Psyllid ID: psy6349

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
MRNLIVSSPGLKREALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSHRCHCICWDDLRNSI
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEccccccEEEEccccccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccEEEcccccEEEEccccccccccccccEEEEccccEEEEEccccccEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccEEEcccccEEEEccccccccccccccEEEcccccEEEEccccccccccc
Coil and Loop (DISEMBL)
mrnlivsspglkrealchngtcedfgnshrchcmegytgsycsieinecesdpcqngatcqdliggyscqcargfqgqncelnvddckpnpcqnggichdlinhfscscpsglkrealchngtcedfgnshrchcicwddlrnsi
Flexible Loop (DISEMBL)
mrnlivsspglkreaLCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNgtcedfgnshrCHCICWDDLRNSI
Low Complexity Region (SEG)
MRNLIVSSPGLKREALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSHRCHCICWDDLRNSI
Disordered region (IsUnstruct)
************REALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSHRCHCICWDDL****
Disordered Region (DISOPRED)
MRNLIVSSPGLKREALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSHRCHCICWDDLRN**
Disordered Region (DISEMBL)
MRNLIVSSPGLKREALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSHRCHCICWDDLRNSI
Disordered Region (DISPRO)
*RNLIVSSPGLKREALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSHRCHCICWDDLRNSI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRNLIVSSPGLKREALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSHRCHCICWDDLRNSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
P07207	2703	Neurogenic locus Notch pr	yes	N/A	0.868	0.046	0.579	1e-38
Q04721	2471	Neurogenic locus notch ho	yes	N/A	0.772	0.045	0.557	1e-30
O35516	2470	Neurogenic locus notch ho	yes	N/A	0.834	0.048	0.552	2e-30
Q9QW30	2471	Neurogenic locus notch ho	yes	N/A	0.724	0.042	0.584	3e-30
P46530	2437	Neurogenic locus notch ho	no	N/A	0.724	0.043	0.528	2e-27
Q6V0I7	4981	Protocadherin Fat 4 OS=Ho	no	N/A	0.931	0.027	0.367	4e-27
Q2PZL6	4981	Protocadherin Fat 4 OS=Mu	no	N/A	0.731	0.021	0.381	6e-27
Q01705	2531	Neurogenic locus notch ho	no	N/A	0.724	0.041	0.528	1e-26
P21783	2524	Neurogenic locus notch pr	N/A	N/A	0.765	0.043	0.508	1e-26
P46531	2555	Neurogenic locus notch ho	no	N/A	0.724	0.041	0.537	3e-26

>sp|P07207|NOTCH_DROME Neurogenic locus Notch protein OS=Drosophila melanogaster GN=N PE=1 SV=3

 Score =  158 bits (399), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/138 (57%), Positives = 94/138 (68%), Gaps = 12/138 (8%)

Query: 10   GLKREALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSC 69
            GL    LC+NGTC+D+GNSH C+C +GY GSYC  EI+EC+S PCQNG TC+DLIG Y C
Sbjct: 1148 GLSLRQLCNNGTCKDYGNSHVCYCSQGYAGSYCQKEIDECQSQPCQNGGTCRDLIGAYEC 1207

Query: 70   QCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK-----------REAL 118
            QC +GFQGQNCELN+DDC PNPCQNGG CHD + +FSCSCP G             +   
Sbjct: 1208 QCRQGFQGQNCELNIDDCAPNPCQNGGTCHDRVMNFSCSCPPGTMGIICEINKDDCKPGA 1267

Query: 119  CH-NGTCEDFGNSHRCHC 135
            CH NG+C D      C C
Sbjct: 1268 CHNNGSCIDRVGGFECVC 1285

Signaling protein, which regulates, with both positive and negative signals, the differentiation of at least central and peripheral nervous system and eye, wing disk, oogenesis, segmental appendages such as antennae and legs, and muscles, through lateral inhibition or induction. Functions as a receptor for membrane-bound ligands Delta and Serrate to regulate cell-fate determination. Upon ligand activation, and releasing from the cell membrane, the Notch intracellular domain (NICD) forms a transcriptional activator complex with Su(H) (Suppressor of hairless) and activates genes of the E(spl) complex. Essential for proper differentiation of ectoderm. Fringe (fng) acts in the Golgi to determine the type of O-linked fucose on the EGF modules in N, altering the ability of N to bind with Delta (Dl). O-fut1 also has a role in modulating the interaction. Rumi acts in the endoplasmic reticulum to glucosylate the EGF modules in N, this is required for correct folding and cleavage of N.
Drosophila melanogaster (taxid: 7227)

>sp|Q04721|NOTC2_HUMAN Neurogenic locus notch homolog protein 2 OS=Homo sapiens GN=NOTCH2 PE=1 SV=3

 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 80/113 (70%), Gaps = 1/113 (0%)

Query: 3    NLIVSSPGLKREALC-HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQ 61
            ++  S  G+  E LC H+G C + GN+H C C  GYTGSYC  +++EC S+PCQ+GATC 
Sbjct: 1106 DIAASRRGVLVEHLCQHSGVCINAGNTHYCQCPLGYTGSYCEEQLDECASNPCQHGATCS 1165

Query: 62   DLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK 114
            D IGGY C+C  G+QG NCE  VD+C+  PCQNGG C DL+NHF CSCP G +
Sbjct: 1166 DFIGGYRCECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNHFKCSCPPGTR 1218

Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs (By similarity). Involved in bone remodeling and homeostasis. In collaboration with RELA/p65 enhances NFATc1 promoter activity and positively regulates RANKL-induced osteoclast differentiation.

Homo sapiens (taxid: 9606)

>sp|O35516|NOTC2_MOUSE Neurogenic locus notch homolog protein 2 OS=Mus musculus GN=Notch2 PE=1 SV=1

 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/123 (55%), Positives = 82/123 (66%), Gaps = 2/123 (1%)

Query: 10   GLKREALC-HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYS 68
            G+  E LC H+G C + GN+H C C  GYTGSYC  +++EC S+PCQ+GATC D IGGY 
Sbjct: 1111 GVPVEHLCQHSGICINAGNTHHCQCPLGYTGSYCEEQLDECASNPCQHGATCNDFIGGYR 1170

Query: 69   CQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFG 128
            C+C  G+QG NCE  VD+C+  PCQNGG C DL+NHF CSCP G  R  LC     E  G
Sbjct: 1171 CECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNHFKCSCPPG-TRGLLCEENIDECAG 1229

Query: 129  NSH 131
              H
Sbjct: 1230 GPH 1232

Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs (By similarity). May play an essential role in postimplantation development, probably in some aspect of cell specification and/or differentiation. In collaboration with RELA/p65 enhances NFATc1 promoter activity and positively regulates RANKL-induced osteoclast differentiation.

Mus musculus (taxid: 10090)

>sp|Q9QW30|NOTC2_RAT Neurogenic locus notch homolog protein 2 OS=Rattus norvegicus GN=Notch2 PE=1 SV=1

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/106 (58%), Positives = 77/106 (72%), Gaps = 1/106 (0%)

Query: 10   GLKREALC-HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYS 68
            G+  E LC H+G C + GN+H C C  GYTGSYC  +++EC S+PCQ+GATC D IGGY 
Sbjct: 1113 GVPVEHLCQHSGICINAGNTHHCQCPLGYTGSYCEEQLDECASNPCQHGATCSDFIGGYR 1172

Query: 69   CQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK 114
            C+C  G+QG NCE  VD+C+  PCQNGG C DL+NHF CSCP G +
Sbjct: 1173 CECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNHFKCSCPPGTR 1218

Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs. May play an essential role in postimplantation development, probably in some aspect of cell specification and/or differentiation.

Rattus norvegicus (taxid: 10116)

>sp|P46530|NOTC1_DANRE Neurogenic locus notch homolog protein 1 OS=Danio rerio GN=notch1a PE=2 SV=1

 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/106 (52%), Positives = 72/106 (67%), Gaps = 1/106 (0%)

Query: 10   GLKREALC-HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYS 68
            G+    LC H G C D GN+H C C  GYTGSYC  +++EC+ +PCQNGATC D +GGYS
Sbjct: 1107 GVSVAVLCRHAGQCVDAGNTHLCRCQAGYTGSYCQEQVDECQPNPCQNGATCTDYLGGYS 1166

Query: 69   CQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK 114
            C+C  G+ G NC   +++C   PCQNGG C DL+N + CSCP G +
Sbjct: 1167 CECVPGYHGMNCSKEINECLSQPCQNGGTCIDLVNTYKCSCPRGTQ 1212

Implicated in cell fate specifications during embryo development. May be involved in the formation of the neural plate, notochord and brain vesicles.

Danio rerio (taxid: 7955)

>sp|Q6V0I7|FAT4_HUMAN Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2

 Score =  120 bits (300), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 54/147 (36%), Positives = 80/147 (54%), Gaps = 12/147 (8%)

Query: 1    MRNLIVSSPGLKREALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATC 60
            +R L VSS    RE+L       +      C C+ GY GS+C I+I+EC   PC +G TC
Sbjct: 3818 LRRLAVSSVLKSRESLPVIIVANEPLQPFLCKCLPGYAGSWCEIDIDECLPSPCHSGGTC 3877

Query: 61   QDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREAL-- 118
             +L+GG+SC C  GF G+ CE ++++C  +PC+NG IC +    F+C C +G   +    
Sbjct: 3878 HNLVGGFSCSCPDGFTGRACERDINECLQSPCKNGAICQNFPGSFNCVCKTGYTGKMCES 3937

Query: 119  ---------CHN-GTCEDFGNSHRCHC 135
                     C N G+C+   +S+ CHC
Sbjct: 3938 SVNYCECNPCFNGGSCQSGVDSYYCHC 3964

May function in the regulation of planar cell polarity (By similarity). Cadherins are cell-cell interaction molecules.

Homo sapiens (taxid: 9606)

>sp|Q2PZL6|FAT4_MOUSE Protocadherin Fat 4 OS=Mus musculus GN=Fat4 PE=1 SV=2

 Score =  119 bits (298), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 45/118 (38%), Positives = 70/118 (59%), Gaps = 12/118 (10%)

Query: 30   RCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKP 89
            +C C+ GY GS+C ++I+EC   PC NG TC +L+GG+SC C  GF G+ CE ++++C P
Sbjct: 3849 QCKCVPGYAGSWCEVDIDECLPAPCHNGGTCHNLVGGFSCSCPEGFTGRACERDINECLP 3908

Query: 90   NPCQNGGICHDLINHFSCSCPSGLKREAL-----------CHN-GTCEDFGNSHRCHC 135
            +PC++G +C +    F+C C +G   +             C N G+C+    S+ CHC
Sbjct: 3909 SPCKHGAVCQNFPGGFNCVCKTGYTGKMCESSVNYCECNPCFNGGSCQSGVESYYCHC 3966

May function in the regulation of planar cell polarity. Cadherins are cell-cell interaction molecules.

Mus musculus (taxid: 10090)

>sp|Q01705|NOTC1_MOUSE Neurogenic locus notch homolog protein 1 OS=Mus musculus GN=Notch1 PE=1 SV=3

 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/106 (52%), Positives = 70/106 (66%), Gaps = 1/106 (0%)

Query: 10   GLKREALC-HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYS 68
            G+    LC H G C D G+ H CHC  GYTGSYC  E++EC  +PCQNGATC D +GG+S
Sbjct: 1109 GIDVTLLCQHGGLCVDEGDKHYCHCQAGYTGSYCEDEVDECSPNPCQNGATCTDYLGGFS 1168

Query: 69   CQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK 114
            C+C  G+ G NC   +++C   PCQNGG C DL N + CSCP G +
Sbjct: 1169 CKCVAGYHGSNCSEEINECLSQPCQNGGTCIDLTNSYKCSCPRGTQ 1214

Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs (By similarity). May play an essential role in postimplantation development, probably in some aspect of cell specification and/or differentiation. May be involved in mesoderm development, somite formation and neurogenesis. Involved in the maturation of both CD4+ and CD8+ cells in the thymus. Important for follicular differentiation and possibly cell fate selection within the follicle. During cerebellar development, functions as a receptor for neuronal DNER and is involved in the differentiation of Bergmann glia. Represses neuronal and myogenic differentiation. May enhance HIF1A function by sequestering HIF1AN away from HIF1A.

Mus musculus (taxid: 10090)

>sp|P21783|NOTCH_XENLA Neurogenic locus notch protein homolog OS=Xenopus laevis GN=notch1 PE=1 SV=3

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 73/112 (65%), Gaps = 1/112 (0%)

Query: 4    LIVSSPGLKREALCHN-GTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQD 62
            +     G+    LC N G C D GN+H C C  GYTGSYC  +++EC  +PCQNGATC D
Sbjct: 1102 VAAKQQGVDIVHLCRNSGMCVDTGNTHFCRCQAGYTGSYCEEQVDECSPNPCQNGATCTD 1161

Query: 63   LIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK 114
             +GGYSC+C  G+ G NC   +++C  +PCQNGG C DLIN + CSCP G +
Sbjct: 1162 YLGGYSCECVAGYHGVNCSEEINECLSHPCQNGGTCIDLINTYKCSCPRGTQ 1213

Xenopus laevis (taxid: 8355)

>sp|P46531|NOTC1_HUMAN Neurogenic locus notch homolog protein 1 OS=Homo sapiens GN=NOTCH1 PE=1 SV=4

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 69/106 (65%), Gaps = 1/106 (0%)

Query: 10   GLKREALC-HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYS 68
            G+    LC H G C D GN+H C C  GYTGSYC   ++EC   PCQNGATC D +GGYS
Sbjct: 1109 GVDVARLCQHGGLCVDAGNTHHCRCQAGYTGSYCEDLVDECSPSPCQNGATCTDYLGGYS 1168

Query: 69   CQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK 114
            C+C  G+ G NC   +D+C  +PCQNGG C DL N + CSCP G +
Sbjct: 1169 CKCVAGYHGVNCSEEIDECLSHPCQNGGTCLDLPNTYKCSCPRGTQ 1214

Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs. May be important for normal lymphocyte function. In altered form, may contribute to transformation or progression in some T-cell neoplasms. Involved in the maturation of both CD4+ and CD8+ cells in the thymus. May be important for follicular differentiation and possibly cell fate selection within the follicle. During cerebellar development, may function as a receptor for neuronal DNER and may be involved in the differentiation of Bergmann glia. Represses neuronal and myogenic differentiation. May enhance HIF1A function by sequestering HIF1AN away from HIF1A.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
340728435	1986	PREDICTED: neurogenic locus Notch protei	0.868	0.063	0.637	2e-42
380013907	2461	PREDICTED: neurogenic locus Notch protei	0.868	0.051	0.652	2e-42
328788585	2459	PREDICTED: neurogenic locus Notch protei	0.868	0.051	0.652	2e-42
399931787	974	notch, partial [Biston betularia]	0.868	0.129	0.652	4e-42
270000757	2334	hypothetical protein TcasGA2_TC004393 [T	0.862	0.053	0.656	5e-42
167466224	2407	Notch [Tribolium castaneum]	0.862	0.051	0.656	6e-42
350416202	2500	PREDICTED: neurogenic locus Notch protei	0.868	0.050	0.637	7e-42
193641183	2475	PREDICTED: neurogenic locus Notch protei	0.868	0.050	0.654	7e-42
242009671	2491	notch, putative [Pediculus humanus corpo	0.868	0.050	0.630	1e-41
255652901	2463	Notch homolog [Bombyx mori] gi|251752766	0.868	0.051	0.644	1e-41

>gi|340728435|ref|XP_003402530.1| PREDICTED: neurogenic locus Notch protein-like, partial [Bombus terrestris]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/138 (63%), Positives = 101/138 (73%), Gaps = 12/138 (8%)

Query: 10  GLKREALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSC 69
           G+  ++LC+NGTCED GNSHRCHC+EGYTGSYC  E+NEC+S PCQNGATC+DL+G Y C
Sbjct: 631 GVPEKSLCNNGTCEDIGNSHRCHCLEGYTGSYCQEEVNECDSAPCQNGATCKDLVGSYQC 690

Query: 70  QCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK-----------REAL 118
           QC +GFQGQNCELNVDDC+PNPCQNGG CHDLI++FSCSCP G                 
Sbjct: 691 QCTKGFQGQNCELNVDDCRPNPCQNGGTCHDLISNFSCSCPPGTLGFICELNVDDCAVGT 750

Query: 119 CH-NGTCEDFGNSHRCHC 135
           CH NGTC D      C C
Sbjct: 751 CHNNGTCTDKVGGFECKC 768

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013907|ref|XP_003690986.1| PREDICTED: neurogenic locus Notch protein-like [Apis florea]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/138 (65%), Positives = 100/138 (72%), Gaps = 12/138 (8%)

Query: 10   GLKREALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSC 69
            G+  + LC+NGTCED GNSHRCHC+EGYTGSYC  E+NEC+S PCQNGATC+DLIG Y C
Sbjct: 1107 GVPEKNLCNNGTCEDIGNSHRCHCLEGYTGSYCQEEVNECDSAPCQNGATCKDLIGSYQC 1166

Query: 70   QCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK-----------REAL 118
            QC +GFQGQNCELNVDDCKPNPCQNGG CHDLI++FSCSCP G                 
Sbjct: 1167 QCTKGFQGQNCELNVDDCKPNPCQNGGTCHDLISNFSCSCPPGTLGFICELNVDDCTVGA 1226

Query: 119  CH-NGTCEDFGNSHRCHC 135
            CH NGTC D      C C
Sbjct: 1227 CHNNGTCTDKVGGFECKC 1244

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788585|ref|XP_396734.4| PREDICTED: neurogenic locus Notch protein [Apis mellifera]

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/138 (65%), Positives = 100/138 (72%), Gaps = 12/138 (8%)

Query: 10   GLKREALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSC 69
            G+  + LC+NGTCED GNSHRCHC+EGYTGSYC  E+NEC+S PCQNGATC+DLIG Y C
Sbjct: 1099 GVPEKNLCNNGTCEDIGNSHRCHCLEGYTGSYCQEEVNECDSAPCQNGATCKDLIGSYQC 1158

Query: 70   QCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK-----------REAL 118
            QC +GFQGQNCELNVDDCKPNPCQNGG CHDLI++FSCSCP G                 
Sbjct: 1159 QCTKGFQGQNCELNVDDCKPNPCQNGGTCHDLISNFSCSCPPGTLGFICELNVDDCTVGA 1218

Query: 119  CH-NGTCEDFGNSHRCHC 135
            CH NGTC D      C C
Sbjct: 1219 CHNNGTCTDKVGGFECKC 1236

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|399931787|gb|AFP57443.1| notch, partial [Biston betularia]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/138 (65%), Positives = 103/138 (74%), Gaps = 12/138 (8%)

Query: 10  GLKREALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSC 69
           G+K + LC+NG+CED GNSHRCHC+EGYTGSYC  EINECES PCQNGA C+DL+G Y C
Sbjct: 218 GVKLKQLCNNGSCEDIGNSHRCHCLEGYTGSYCQKEINECESAPCQNGAVCKDLVGTYQC 277

Query: 70  QCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGL------------KREA 117
           QCA+GFQGQNCELNV+DC PNPCQNGG CHDLIN+FSCSCP G             K++A
Sbjct: 278 QCAKGFQGQNCELNVNDCLPNPCQNGGTCHDLINNFSCSCPFGTLGKICEINVNDCKQDA 337

Query: 118 LCHNGTCEDFGNSHRCHC 135
             +NGTC D      C C
Sbjct: 338 CHNNGTCIDKVGGFECKC 355

Source: Biston betularia

Species: Biston betularia

Genus: Biston

Family: Geometridae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270000757|gb|EEZ97204.1| hypothetical protein TcasGA2_TC004393 [Tribolium castaneum]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 90/137 (65%), Positives = 99/137 (72%), Gaps = 12/137 (8%)

Query: 11   LKREALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQ 70
            +  + LC+NGTCED GNSHRCHC +GY+GSYC  EINEC+S PCQNGATC DLIG YSC+
Sbjct: 1003 VPLKKLCNNGTCEDIGNSHRCHCSDGYSGSYCQTEINECDSAPCQNGATCLDLIGSYSCK 1062

Query: 71   CARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK-----------REALC 119
            C +GFQGQNCELNVDDCKPNPCQNGG CHDL+N FSCSCPSG             R   C
Sbjct: 1063 CPKGFQGQNCELNVDDCKPNPCQNGGTCHDLVNSFSCSCPSGTLGYICEINVDDCRPGAC 1122

Query: 120  H-NGTCEDFGNSHRCHC 135
            H NGTC D      C C
Sbjct: 1123 HNNGTCLDKVGGFECKC 1139

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|167466224|ref|NP_001107853.1| Notch [Tribolium castaneum]

 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 90/137 (65%), Positives = 99/137 (72%), Gaps = 12/137 (8%)

Query: 11   LKREALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQ 70
            +  + LC+NGTCED GNSHRCHC +GY+GSYC  EINEC+S PCQNGATC DLIG YSC+
Sbjct: 1076 VPLKKLCNNGTCEDIGNSHRCHCSDGYSGSYCQTEINECDSAPCQNGATCLDLIGSYSCK 1135

Query: 71   CARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK-----------REALC 119
            C +GFQGQNCELNVDDCKPNPCQNGG CHDL+N FSCSCPSG             R   C
Sbjct: 1136 CPKGFQGQNCELNVDDCKPNPCQNGGTCHDLVNSFSCSCPSGTLGYICEINVDDCRPGAC 1195

Query: 120  H-NGTCEDFGNSHRCHC 135
            H NGTC D      C C
Sbjct: 1196 HNNGTCLDKVGGFECKC 1212

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416202|ref|XP_003490873.1| PREDICTED: neurogenic locus Notch protein-like [Bombus impatiens]

 Score =  175 bits (443), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 88/138 (63%), Positives = 100/138 (72%), Gaps = 12/138 (8%)

Query: 10   GLKREALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSC 69
            G+  + LC+NGTCED GNSHRCHC+EGYTGSYC  E+NEC+S PCQNGATC+DL+G Y C
Sbjct: 1129 GVPEKNLCNNGTCEDIGNSHRCHCLEGYTGSYCQEEVNECDSAPCQNGATCKDLVGSYQC 1188

Query: 70   QCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK-----------REAL 118
            QC +GFQGQNCELNVDDC+PNPCQNGG CHDLI++FSCSCP G                 
Sbjct: 1189 QCTKGFQGQNCELNVDDCRPNPCQNGGTCHDLISNFSCSCPPGTLGFICELNVDDCAVGT 1248

Query: 119  CH-NGTCEDFGNSHRCHC 135
            CH NGTC D      C C
Sbjct: 1249 CHNNGTCTDKVGGFECKC 1266

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193641183|ref|XP_001948396.1| PREDICTED: neurogenic locus Notch protein-like [Acyrthosiphon pisum]

 Score =  174 bits (442), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 91/139 (65%), Positives = 101/139 (72%), Gaps = 13/139 (9%)

Query: 10   GLKREALCHNG-TCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYS 68
            G++R+ALCHNG  CED GNSHRCHC +GY+GSYC+ EINEC+S PCQNGATC+DL+ GYS
Sbjct: 1133 GVRRDALCHNGGVCEDIGNSHRCHCADGYSGSYCTKEINECDSAPCQNGATCRDLVAGYS 1192

Query: 69   CQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGL------------KRE 116
            CQC RGFQGQNCELNVDDC PNPCQNGG C DLIN FSCSCP G               E
Sbjct: 1193 CQCPRGFQGQNCELNVDDCHPNPCQNGGTCRDLINSFSCSCPPGTLGIICDINIDDCSPE 1252

Query: 117  ALCHNGTCEDFGNSHRCHC 135
            A  +NGTC D      C C
Sbjct: 1253 ACHNNGTCIDRVGGFDCRC 1271

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242009671|ref|XP_002425606.1| notch, putative [Pediculus humanus corporis] gi|212509499|gb|EEB12868.1| notch, putative [Pediculus humanus corporis]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 87/138 (63%), Positives = 101/138 (73%), Gaps = 12/138 (8%)

Query: 10   GLKREALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSC 69
            G+ +E LC+NGTCED GNSHRCHC++GYTGSYC  EINEC+S PCQNGATC+DLIG YSC
Sbjct: 1101 GVSKEELCNNGTCEDIGNSHRCHCLDGYTGSYCQHEINECDSAPCQNGATCKDLIGSYSC 1160

Query: 70   QCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK-----------REAL 118
            QCA+GFQG NCELNVDDC+PNPC+NGG CHD +++F+CSCP G                 
Sbjct: 1161 QCAKGFQGHNCELNVDDCQPNPCRNGGTCHDFVDNFTCSCPPGTLGILCEWNVDDCVPGA 1220

Query: 119  CH-NGTCEDFGNSHRCHC 135
            CH NGTC D      C C
Sbjct: 1221 CHNNGTCTDKVGGFECKC 1238

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255652901|ref|NP_001157370.1| Notch homolog [Bombyx mori] gi|251752766|dbj|BAH83638.1| Notch [Bombyx mori]

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 89/138 (64%), Positives = 102/138 (73%), Gaps = 12/138 (8%)

Query: 10   GLKREALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSC 69
            G+K + LC+NGTCED GNSHRCHC +GYTGSYC  +INECES PCQNGA C+DL+G Y C
Sbjct: 1135 GVKLKQLCNNGTCEDIGNSHRCHCQDGYTGSYCQKDINECESAPCQNGALCKDLVGTYQC 1194

Query: 70   QCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGL------------KREA 117
            QCA+GFQGQNCELNV+DC PNPCQNGG CHDLIN+FSCSCP G             K++A
Sbjct: 1195 QCAKGFQGQNCELNVNDCLPNPCQNGGTCHDLINNFSCSCPFGTLGKICEINVNDCKQDA 1254

Query: 118  LCHNGTCEDFGNSHRCHC 135
              +NGTC D      C C
Sbjct: 1255 CHNNGTCIDRVGGFECKC 1272

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
FB|FBgn0004647	2703	N "Notch" [Drosophila melanoga	0.868	0.046	0.579	4.4e-43
UNIPROTKB|E1BSB8	2434	E1BSB8 "Uncharacterized protei	0.868	0.051	0.530	5e-36
UNIPROTKB|F1P236	2442	F1P236 "Uncharacterized protei	0.868	0.051	0.530	5.1e-36
UNIPROTKB|F1N9V3	2467	F1N9V3 "Uncharacterized protei	0.868	0.051	0.530	5.1e-36
UNIPROTKB|F1PPP5	2324	NOTCH2 "Uncharacterized protei	0.834	0.052	0.544	6.1e-36
UNIPROTKB|F1PS94	2471	NOTCH2 "Uncharacterized protei	0.834	0.048	0.544	6.6e-36
MGI|MGI:97364	2470	Notch2 "notch 2" [Mus musculus	0.834	0.048	0.552	1.4e-35
UNIPROTKB|F1SB08	2175	F1SB08 "Uncharacterized protei	0.862	0.057	0.531	1.5e-35
UNIPROTKB|F1MPE9	2471	NOTCH2 "Uncharacterized protei	0.862	0.050	0.531	1.7e-35
ZFIN|ZDB-GENE-000329-4	2475	notch2 "notch homolog 2" [Dani	0.758	0.044	0.576	1.8e-35

FB|FBgn0004647 N "Notch" [Drosophila melanogaster (taxid:7227)]

 Score = 472 (171.2 bits), Expect = 4.4e-43, P = 4.4e-43
 Identities = 80/138 (57%), Positives = 94/138 (68%)

Query:    10 GLKREALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSC 69
             GL    LC+NGTC+D+GNSH C+C +GY GSYC  EI+EC+S PCQNG TC+DLIG Y C
Sbjct:  1148 GLSLRQLCNNGTCKDYGNSHVCYCSQGYAGSYCQKEIDECQSQPCQNGGTCRDLIGAYEC 1207

Query:    70 QCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK-----------REAL 118
             QC +GFQGQNCELN+DDC PNPCQNGG CHD + +FSCSCP G             +   
Sbjct:  1208 QCRQGFQGQNCELNIDDCAPNPCQNGGTCHDRVMNFSCSCPPGTMGIICEINKDDCKPGA 1267

Query:   119 CHN-GTCEDFGNSHRCHC 135
             CHN G+C D      C C
Sbjct:  1268 CHNNGSCIDRVGGFECVC 1285

GO:0007498 "mesoderm development" evidence=IMP

GO:0007398 "ectoderm development" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005622 "intracellular" evidence=NAS;IDA

GO:0016360 "sensory organ precursor cell fate determination" evidence=IMP

GO:0030713 "ovarian follicle cell stalk formation" evidence=IMP;TAS

GO:0030707 "ovarian follicle cell development" evidence=IMP;TAS

GO:0001708 "cell fate specification" evidence=NAS;TAS

GO:0007219 "Notch signaling pathway" evidence=NAS

GO:0009952 "anterior/posterior pattern specification" evidence=TAS

GO:0036011 "imaginal disc-derived leg segmentation" evidence=IMP

GO:0007478 "leg disc morphogenesis" evidence=TAS

GO:0061382 "Malpighian tubule tip cell differentiation" evidence=IMP

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0004872 "receptor activity" evidence=NAS;TAS

GO:0045165 "cell fate commitment" evidence=NAS

GO:0007424 "open tracheal system development" evidence=TAS

GO:0035155 "negative regulation of terminal cell fate specification, open tracheal system" evidence=TAS

GO:0035157 "negative regulation of fusion cell fate specification" evidence=TAS

GO:0007446 "imaginal disc growth" evidence=TAS

GO:0007447 "imaginal disc pattern formation" evidence=TAS

GO:0007519 "skeletal muscle tissue development" evidence=IMP

GO:0004888 "transmembrane signaling receptor activity" evidence=NAS;TAS

GO:0007155 "cell adhesion" evidence=TAS

GO:0016021 "integral to membrane" evidence=IEA;TAS

GO:0045463 "R8 cell development" evidence=TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0007460 "R8 cell fate commitment" evidence=TAS

GO:0007422 "peripheral nervous system development" evidence=IMP;TAS

GO:0007403 "glial cell fate determination" evidence=IMP

GO:0007293 "germarium-derived egg chamber formation" evidence=IMP;TAS

GO:0016333 "morphogenesis of follicular epithelium" evidence=NAS

GO:0030708 "germarium-derived female germ-line cyst encapsulation" evidence=TAS

GO:0007314 "oocyte anterior/posterior axis specification" evidence=TAS

GO:0007451 "dorsal/ventral lineage restriction, imaginal disc" evidence=TAS

GO:0042067 "establishment of ommatidial planar polarity" evidence=NAS;TAS

GO:0048749 "compound eye development" evidence=NAS;TAS

GO:0007423 "sensory organ development" evidence=IMP

GO:0016330 "second mitotic wave involved in compound eye morphogenesis" evidence=NAS

GO:0046667 "compound eye retinal cell programmed cell death" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0045465 "R8 cell differentiation" evidence=NAS

GO:0045468 "regulation of R8 cell spacing in compound eye" evidence=NAS

GO:0061331 "epithelial cell proliferation involved in Malpighian tubule morphogenesis" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP;NAS

GO:0007450 "dorsal/ventral pattern formation, imaginal disc" evidence=TAS

GO:0005634 "nucleus" evidence=IDA;NAS;TAS

GO:0046331 "lateral inhibition" evidence=IMP;NAS;TAS

GO:0046329 "negative regulation of JNK cascade" evidence=NAS

GO:0007391 "dorsal closure" evidence=TAS

GO:0001737 "establishment of imaginal disc-derived wing hair orientation" evidence=NAS

GO:0009608 "response to symbiont" evidence=IMP

GO:0035171 "lamellocyte differentiation" evidence=IMP

GO:0042688 "crystal cell differentiation" evidence=IMP

GO:0042676 "compound eye cone cell fate commitment" evidence=TAS

GO:0035162 "embryonic hemopoiesis" evidence=IMP

GO:0035172 "hemocyte proliferation" evidence=IMP

GO:0035167 "larval lymph gland hemopoiesis" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0007464 "R3/R4 cell fate commitment" evidence=NAS

GO:0046666 "retinal cell programmed cell death" evidence=TAS

GO:0007473 "wing disc proximal/distal pattern formation" evidence=TAS

GO:0042689 "regulation of crystal cell differentiation" evidence=TAS

GO:0008356 "asymmetric cell division" evidence=TAS

GO:0007419 "ventral cord development" evidence=NAS

GO:0007411 "axon guidance" evidence=IMP

GO:0007521 "muscle cell fate determination" evidence=IMP

GO:0042686 "regulation of cardioblast cell fate specification" evidence=IMP

GO:0045466 "R7 cell differentiation" evidence=IMP;TAS

GO:0008587 "imaginal disc-derived wing margin morphogenesis" evidence=IMP

GO:0007346 "regulation of mitotic cell cycle" evidence=TAS

GO:0035170 "lymph gland crystal cell differentiation" evidence=TAS

GO:0048477 "oogenesis" evidence=IMP

GO:0030720 "oocyte localization involved in germarium-derived egg chamber formation" evidence=IMP

GO:0035165 "embryonic crystal cell differentiation" evidence=TAS

GO:0040008 "regulation of growth" evidence=IGI;IMP

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007440 "foregut morphogenesis" evidence=IMP

GO:0007616 "long-term memory" evidence=IGI;IMP;TAS

GO:0007615 "anesthesia-resistant memory" evidence=IMP

GO:0048542 "lymph gland development" evidence=IMP

GO:0007157 "heterophilic cell-cell adhesion" evidence=IDA;IMP

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IMP

GO:0045316 "negative regulation of compound eye photoreceptor development" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=IMP

GO:0007015 "actin filament organization" evidence=IMP

GO:0048190 "wing disc dorsal/ventral pattern formation" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0007297 "ovarian follicle cell migration" evidence=IMP

GO:0046843 "dorsal appendage formation" evidence=IMP

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0048666 "neuron development" evidence=IMP

GO:0010001 "glial cell differentiation" evidence=IMP

GO:0008347 "glial cell migration" evidence=IMP

GO:0035003 "subapical complex" evidence=IDA

GO:0005912 "adherens junction" evidence=IDA

GO:0035153 "epithelial cell type specification, open tracheal system" evidence=IMP

GO:0003682 "chromatin binding" evidence=IDA

GO:0050767 "regulation of neurogenesis" evidence=IMP

GO:0048863 "stem cell differentiation" evidence=IMP

GO:0050768 "negative regulation of neurogenesis" evidence=IMP

GO:0007474 "imaginal disc-derived wing vein specification" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IMP

GO:0043234 "protein complex" evidence=IPI

GO:0030718 "germ-line stem cell maintenance" evidence=IMP

GO:0048052 "R1/R6 cell differentiation" evidence=IMP

GO:0035214 "eye-antennal disc development" evidence=IMP

GO:0007400 "neuroblast fate determination" evidence=IDA

GO:0045595 "regulation of cell differentiation" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0051489 "regulation of filopodium assembly" evidence=IMP

GO:0016348 "imaginal disc-derived leg joint morphogenesis" evidence=IMP

GO:0048803 "imaginal disc-derived male genitalia morphogenesis" evidence=IMP

GO:0009986 "cell surface" evidence=IDA

GO:0060288 "formation of a compartment boundary" evidence=IMP

UNIPROTKB|E1BSB8 E1BSB8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 405 (147.6 bits), Expect = 5.0e-36, P = 5.0e-36
 Identities = 69/130 (53%), Positives = 85/130 (65%)

Query:     7 SSPGLKREALC-HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIG 65
             S  G+  + LC H+G C + GN+HRC C  GYTGSYC  +++EC+S PCQNGATC+D +G
Sbjct:  1082 SQRGITVDQLCQHSGHCLNVGNTHRCQCRVGYTGSYCEEQLDECDSSPCQNGATCRDHLG 1141

Query:    66 GYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGT-- 123
             GY C+C  G+QG NCE  VD+C+  PCQNGG C DL+NHF CSCP G  R  LC      
Sbjct:  1142 GYQCECVPGYQGVNCEYEVDECQFQPCQNGGTCIDLVNHFRCSCPPGT-RGRLCEENVDD 1200

Query:   124 CEDFGNSHRC 133
             C       RC
Sbjct:  1201 CISESGGPRC 1210

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0050793 "regulation of developmental process" evidence=IEA

UNIPROTKB|F1P236 F1P236 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 405 (147.6 bits), Expect = 5.1e-36, P = 5.1e-36
 Identities = 69/130 (53%), Positives = 85/130 (65%)

Query:     7 SSPGLKREALC-HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIG 65
             S  G+  + LC H+G C + GN+HRC C  GYTGSYC  +++EC+S PCQNGATC+D +G
Sbjct:  1085 SQRGITVDQLCQHSGHCLNVGNTHRCQCRVGYTGSYCEEQLDECDSSPCQNGATCRDHLG 1144

Query:    66 GYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGT-- 123
             GY C+C  G+QG NCE  VD+C+  PCQNGG C DL+NHF CSCP G  R  LC      
Sbjct:  1145 GYQCECVPGYQGVNCEYEVDECQFQPCQNGGTCIDLVNHFRCSCPPGT-RGRLCEENVDD 1203

Query:   124 CEDFGNSHRC 133
             C       RC
Sbjct:  1204 CISESGGPRC 1213

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0050793 "regulation of developmental process" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0002011 "morphogenesis of an epithelial sheet" evidence=IEA

GO:0002437 "inflammatory response to antigenic stimulus" evidence=IEA

GO:0003184 "pulmonary valve morphogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006959 "humoral immune response" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0016049 "cell growth" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA

GO:0046849 "bone remodeling" evidence=IEA

GO:0060413 "atrial septum morphogenesis" evidence=IEA

GO:0060674 "placenta blood vessel development" evidence=IEA

GO:0072602 "interleukin-4 secretion" evidence=IEA

UNIPROTKB|F1N9V3 F1N9V3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 405 (147.6 bits), Expect = 5.1e-36, P = 5.1e-36
 Identities = 69/130 (53%), Positives = 85/130 (65%)

Query:     7 SSPGLKREALC-HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIG 65
             S  G+  + LC H+G C + GN+HRC C  GYTGSYC  +++EC+S PCQNGATC+D +G
Sbjct:  1110 SQRGITVDQLCQHSGHCLNVGNTHRCQCRVGYTGSYCEEQLDECDSSPCQNGATCRDHLG 1169

Query:    66 GYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGT-- 123
             GY C+C  G+QG NCE  VD+C+  PCQNGG C DL+NHF CSCP G  R  LC      
Sbjct:  1170 GYQCECVPGYQGVNCEYEVDECQFQPCQNGGTCIDLVNHFRCSCPPGT-RGRLCEENVDD 1228

Query:   124 CEDFGNSHRC 133
             C       RC
Sbjct:  1229 CISESGGPRC 1238

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0050793 "regulation of developmental process" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0002011 "morphogenesis of an epithelial sheet" evidence=IEA

GO:0002437 "inflammatory response to antigenic stimulus" evidence=IEA

GO:0003184 "pulmonary valve morphogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006959 "humoral immune response" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0016049 "cell growth" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA

GO:0046849 "bone remodeling" evidence=IEA

GO:0060413 "atrial septum morphogenesis" evidence=IEA

GO:0060674 "placenta blood vessel development" evidence=IEA

GO:0072602 "interleukin-4 secretion" evidence=IEA

UNIPROTKB|F1PPP5 NOTCH2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 404 (147.3 bits), Expect = 6.1e-36, P = 6.1e-36
 Identities = 67/123 (54%), Positives = 83/123 (67%)

Query:    10 GLKREALC-HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYS 68
             G+  + LC H+G C + GNSH C C  GYTGSYC  +++EC S+PCQ+GATC+D IGGY 
Sbjct:  1368 GVSTDHLCQHSGICINAGNSHHCQCPLGYTGSYCEEQLDECSSNPCQHGATCRDFIGGYR 1427

Query:    69 CQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFG 128
             C+C  G+QG NCE  VD+C+  PCQNGG C DL+NHF CSCP G  R  LC     +  G
Sbjct:  1428 CECVPGYQGVNCEYEVDECQNQPCQNGGTCVDLVNHFKCSCPPGT-RGLLCEENIDDCVG 1486

Query:   129 NSH 131
               H
Sbjct:  1487 GPH 1489

GO:0050793 "regulation of developmental process" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1PS94 NOTCH2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 404 (147.3 bits), Expect = 6.6e-36, P = 6.6e-36
 Identities = 67/123 (54%), Positives = 83/123 (67%)

Query:    10 GLKREALC-HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYS 68
             G+  + LC H+G C + GNSH C C  GYTGSYC  +++EC S+PCQ+GATC+D IGGY 
Sbjct:  1113 GVSTDHLCQHSGICINAGNSHHCQCPLGYTGSYCEEQLDECSSNPCQHGATCRDFIGGYR 1172

Query:    69 CQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFG 128
             C+C  G+QG NCE  VD+C+  PCQNGG C DL+NHF CSCP G  R  LC     +  G
Sbjct:  1173 CECVPGYQGVNCEYEVDECQNQPCQNGGTCVDLVNHFKCSCPPGT-RGLLCEENIDDCVG 1231

Query:   129 NSH 131
               H
Sbjct:  1232 GPH 1234

GO:0050793 "regulation of developmental process" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

MGI|MGI:97364 Notch2 "notch 2" [Mus musculus (taxid:10090)]

 Score = 401 (146.2 bits), Expect = 1.4e-35, P = 1.4e-35
 Identities = 68/123 (55%), Positives = 82/123 (66%)

Query:    10 GLKREALC-HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYS 68
             G+  E LC H+G C + GN+H C C  GYTGSYC  +++EC S+PCQ+GATC D IGGY 
Sbjct:  1111 GVPVEHLCQHSGICINAGNTHHCQCPLGYTGSYCEEQLDECASNPCQHGATCNDFIGGYR 1170

Query:    69 CQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFG 128
             C+C  G+QG NCE  VD+C+  PCQNGG C DL+NHF CSCP G  R  LC     E  G
Sbjct:  1171 CECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNHFKCSCPPGT-RGLLCEENIDECAG 1229

Query:   129 NSH 131
               H
Sbjct:  1230 GPH 1232

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001709 "cell fate determination" evidence=ISO;TAS

GO:0001890 "placenta development" evidence=IMP

GO:0001947 "heart looping" evidence=IGI

GO:0002011 "morphogenesis of an epithelial sheet" evidence=IMP

GO:0002437 "inflammatory response to antigenic stimulus" evidence=IGI

GO:0003184 "pulmonary valve morphogenesis" evidence=ISO

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=ISO;IC

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006959 "humoral immune response" evidence=IGI

GO:0007050 "cell cycle arrest" evidence=ISO

GO:0007219 "Notch signaling pathway" evidence=IC;TAS

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0009887 "organ morphogenesis" evidence=TAS

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016049 "cell growth" evidence=ISO

GO:0019899 "enzyme binding" evidence=IPI

GO:0030154 "cell differentiation" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IGI

GO:0042060 "wound healing" evidence=IDA

GO:0043065 "positive regulation of apoptotic process" evidence=IGI

GO:0045672 "positive regulation of osteoclast differentiation" evidence=IDA

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=ISO

GO:0046849 "bone remodeling" evidence=ISO

GO:0050793 "regulation of developmental process" evidence=IEA

GO:0051059 "NF-kappaB binding" evidence=IPI

GO:0060413 "atrial septum morphogenesis" evidence=ISO

GO:0060674 "placenta blood vessel development" evidence=IMP

GO:0070986 "left/right axis specification" evidence=IGI

GO:0072602 "interleukin-4 secretion" evidence=IGI

UNIPROTKB|F1SB08 F1SB08 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 400 (145.9 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 68/128 (53%), Positives = 84/128 (65%)

Query:     7 SSPGLKREALC-HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIG 65
             S  G+  + LC H+G C + GNSH C C  GYTGSYC  +++EC S+PCQ+GATC+D IG
Sbjct:   814 SHRGVPVDRLCQHSGVCINAGNSHHCQCPLGYTGSYCEEQLDECSSNPCQHGATCRDFIG 873

Query:    66 GYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCE 125
             GY C+C  G+QG NCE  VD+C+  PCQNGG C DL+NHF CSCP G  R  LC     +
Sbjct:   874 GYRCECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNHFKCSCPPGT-RGLLCEENI-D 931

Query:   126 DFGNSHRC 133
             D      C
Sbjct:   932 DCARGPHC 939

GO:0050793 "regulation of developmental process" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1MPE9 NOTCH2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 400 (145.9 bits), Expect = 1.7e-35, P = 1.7e-35
 Identities = 68/128 (53%), Positives = 83/128 (64%)

Query:     7 SSPGLKREALC-HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIG 65
             S  G+  + LC H+G C   GNSH C C  GYTGSYC  +++EC S+PCQ+GATC+D IG
Sbjct:  1110 SHRGVPVDRLCQHSGVCISAGNSHHCQCPLGYTGSYCEDQLDECSSNPCQHGATCRDFIG 1169

Query:    66 GYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCE 125
             GY C+C  G+QG NCE  VD+C+  PCQNGG C DL+NHF CSCP G  R  LC     +
Sbjct:  1170 GYRCECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNHFKCSCPPGT-RGLLCEENV-D 1227

Query:   126 DFGNSHRC 133
             D      C
Sbjct:  1228 DCARGPHC 1235

GO:0072602 "interleukin-4 secretion" evidence=IEA

GO:0060674 "placenta blood vessel development" evidence=IEA

GO:0060413 "atrial septum morphogenesis" evidence=IEA

GO:0046849 "bone remodeling" evidence=IEA

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0016049 "cell growth" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0006959 "humoral immune response" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003184 "pulmonary valve morphogenesis" evidence=IEA

GO:0002437 "inflammatory response to antigenic stimulus" evidence=IEA

GO:0002011 "morphogenesis of an epithelial sheet" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0050793 "regulation of developmental process" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

ZFIN|ZDB-GENE-000329-4 notch2 "notch homolog 2" [Danio rerio (taxid:7955)]

 Score = 400 (145.9 bits), Expect = 1.8e-35, P = 1.8e-35
 Identities = 64/111 (57%), Positives = 80/111 (72%)

Query:     5 IVSSPGLKREALC-HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDL 63
             +  + G+    +C H G C++ GN+H+C C +GYTGSYC  EI+EC S PC+NG TC D 
Sbjct:  1109 VALNKGVAENMVCKHAGHCKNIGNTHQCECQKGYTGSYCETEIDECLSSPCRNGGTCVDY 1168

Query:    64 IGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK 114
              GGY C+C  GFQG NCE NV++C+ NPC+NGG C DLINHFSCSCP G K
Sbjct:  1169 QGGYDCKCKAGFQGVNCEYNVNECQSNPCRNGGTCIDLINHFSCSCPPGTK 1219

GO:0030154 "cell differentiation" evidence=IEA

GO:0050793 "regulation of developmental process" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0060351 "cartilage development involved in endochondral bone morphogenesis" evidence=IGI

GO:0060325 "face morphogenesis" evidence=IGI

GO:0042246 "tissue regeneration" evidence=IEP

GO:0001889 "liver development" evidence=IGI

GO:0001946 "lymphangiogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q04721	NOTC2_HUMAN	No assigned EC number	0.5575	0.7724	0.0453	yes	N/A
O35516	NOTC2_MOUSE	No assigned EC number	0.5528	0.8344	0.0489	yes	N/A
Q9QW30	NOTC2_RAT	No assigned EC number	0.5849	0.7241	0.0424	yes	N/A
P07207	NOTCH_DROME	No assigned EC number	0.5797	0.8689	0.0466	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	145
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	8e-08
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	1e-06
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	6e-04
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	6e-04
cd00053	36	cd00053, EGF, Epidermal growth factor domain, foun	0.003

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 45.3 bits (108), Expect = 8e-08
 Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 46 INECES-DPCQNGATCQDLIGGYSCQCARGFQGQNCE 81
          I+EC S +PCQNG TC + +G Y C C  G+ G+NCE
Sbjct: 2  IDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 42.6 bits (101), Expect = 1e-06
 Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 2/39 (5%)

Query: 45 EINECES-DPCQNGATCQDLIGGYSCQCARGFQ-GQNCE 81
          +I+EC S +PCQNG TC + +G Y C+C  G+  G+NCE
Sbjct: 1  DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39

Length = 39

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 35.3 bits (82), Expect = 6e-04
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 83  NVDDCK-PNPCQNGGICHDLINHFSCSCPSG 112
           ++D+C   NPCQNGG C + +  + CSCP G
Sbjct: 1   DIDECASGNPCQNGGTCVNTVGSYRCSCPPG 31

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 35.3 bits (82), Expect = 6e-04
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 83  NVDDCK-PNPCQNGGICHDLINHFSCSCPSGLKREALC 119
           ++D+C   NPCQNGG C + +  + C CP G      C
Sbjct: 1   DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNC 38

Length = 39

>gnl|CDD|238010 cd00053, EGF, Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

 Score = 33.2 bits (76), Expect = 0.003
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 50 ESDPCQNGATCQDLIGGYSCQCARGFQGQN 79
           S+PC NG TC +  G Y C C  G+ G  
Sbjct: 4  ASNPCSNGGTCVNTPGSYRCVCPPGYTGDR 33

Length = 36

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
KOG1219|consensus	4289		99.57
KOG1214|consensus	1289		99.32
KOG1219|consensus	4289		99.24
KOG4289|consensus	2531		99.05
KOG1214|consensus	1289		98.96
KOG4289|consensus	2531		98.79
KOG1225|consensus	525		98.71
KOG4260|consensus	350		98.52
KOG1225|consensus	525		98.02
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	98.02
KOG1217|consensus	487		98.01
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	97.77
KOG1217|consensus	487		97.71
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	97.65
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	97.4
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	97.34
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	97.28
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	97.23
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	97.19
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	97.18
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	97.08
PF12662	24	cEGF: Complement Clr-like EGF-like	96.95
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	96.81
smart00181	35	EGF Epidermal growth factor-like domain.	96.46
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	96.19
KOG1226|consensus	783		96.12
KOG4260|consensus	350		96.0
cd00053	36	EGF Epidermal growth factor domain, found in epide	95.97
smart00181	35	EGF Epidermal growth factor-like domain.	95.93
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	95.8
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	95.77
cd00053	36	EGF Epidermal growth factor domain, found in epide	95.63
PF12946	37	EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730	95.25
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	94.8
KOG0994|consensus	1758		93.99
PHA02887	126	EGF-like protein; Provisional	91.97
KOG1226|consensus	783		91.96
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	90.04
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	89.88
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	88.93
KOG0994|consensus	1758		87.99
PF09064	34	Tme5_EGF_like: Thrombomodulin like fifth domain, E	83.11
KOG3512|consensus	592		83.03

>KOG1219|consensus

Probab=99.57  E-value=1.4e-14  Score=114.49  Aligned_cols=108  Identities=31%  Similarity=0.912  Sum_probs=97.6

Q ss_pred             CCCCCCCCCC-CEeeeCC-CceeeecCCCcccCCCCccCCCCCCCCCCCCCeeeeCCCceEEeCCCCcccCCcccc-CCC
Q psy6349          10 GLKREALCHN-GTCEDFG-NSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELN-VDD   86 (145)
Q Consensus        10 ~~~~~~~c~~-~~c~~~~-~~~~C~c~~g~~~~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~~~-~~~   86 (145)
                      -.|...+|+| |.|.... +.|.|.|.+.|+|..|+.++..|.+.||..++.|....+.+.|.|+.+|.|..|+.. +++
T Consensus      3865 d~C~~npCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG~~Ce~~Gi~e 3944 (4289)
T KOG1219|consen 3865 DPCNDNPCQHGGTCISQPKGGYKCKCPSQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTGKRCEARGISE 3944 (4289)
T ss_pred             cccccCcccCCCEecCCCCCceEEeCcccccCcccccccccccCCCCCCCCEEEecCCCeeEeCCCCccCceeecccccc
Confidence            3446678887 7999775 679999999999999998899999999999999999999999999999999999876 789


Q ss_pred             CcCCCCCCCCEEeeCCCCeEeeCCCCCccCC
Q psy6349          87 CKPNPCQNGGICHDLINHFSCSCPSGLKREA  117 (145)
Q Consensus        87 c~~~~~~~~~~c~~~~~~~~C~c~~g~~~~~  117 (145)
                      |+...|.+++.|+++.|+|+|.|.++|.+..
T Consensus      3945 Cs~n~C~~gg~C~n~~gsf~CncT~g~~gr~ 3975 (4289)
T KOG1219|consen 3945 CSKNVCGTGGQCINIPGSFHCNCTPGILGRT 3975 (4289)
T ss_pred             cccccccCCceeeccCCceEeccChhHhccc
Confidence            9999999999999999999999999998763

>KOG1214|consensus

Probab=99.32  E-value=2.6e-11  Score=89.61  Aligned_cols=137  Identities=27%  Similarity=0.707  Sum_probs=99.9

Q ss_pred             ecCCCCCCCCCCC-CCEeeeCCC-ceeeecCCCcc--cCCCCccCCCCCCC--CCCCCCeeeeCCCceEEeCCCCcc--c
Q psy6349           6 VSSPGLKREALCH-NGTCEDFGN-SHRCHCMEGYT--GSYCSIEINECESD--PCQNGATCQDLIGGYSCQCARGFQ--G   77 (145)
Q Consensus         6 ~~~~~~~~~~~c~-~~~c~~~~~-~~~C~c~~g~~--~~~c~~~~~~c~~~--~c~~~~~c~~~~~~~~c~c~~g~~--g   77 (145)
                      ..++|.++.+.|. ++.|.+.++ .|.|.|..+|.  +..|. ++++|...  .|+.+..|++..+.+.|.|..+|.  +
T Consensus       691 ~~npCy~gsh~cdt~a~C~pg~~~~~tcecs~g~~gdgr~c~-d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~d  769 (1289)
T KOG1214|consen  691 PVNPCYDGSHMCDTTARCHPGTGVDYTCECSSGYQGDGRNCV-DENECATGFHRCGPNSVCINLPGSYRCECRSGYEFAD  769 (1289)
T ss_pred             ccccceecCcccCCCccccCCCCcceEEEEeeccCCCCCCCC-ChhhhccCCCCCCCCceeecCCCceeEEEeecceecc
Confidence            4467788888885 568887765 58999999997  66774 67777653  488899999999999998877764  2


Q ss_pred             --CCccc-----cCCCCc--CCCCCCCC--EEeeCC-CCeEeeCCCCCccC------------CCCC-CCeeeeCCCcee
Q psy6349          78 --QNCEL-----NVDDCK--PNPCQNGG--ICHDLI-NHFSCSCPSGLKRE------------ALCH-NGTCEDFGNSHR  132 (145)
Q Consensus        78 --~~c~~-----~~~~c~--~~~~~~~~--~c~~~~-~~~~C~c~~g~~~~------------~~C~-~~~c~~~~g~~~  132 (145)
                        -.|-.     ..+.|.  .+.|...+  .|+... +.|.|.|+|||.++            ..|+ ++.|+++.|++.
T Consensus       770 d~~tCV~i~~pap~n~Ce~g~h~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG~~c~dvDeC~psrChp~A~Cyntpgsfs  849 (1289)
T KOG1214|consen  770 DRHTCVLITPPAPANPCEDGSHTCAIAGQARCVHHGGSTYSCACLPGFSGDGHQCTDVDECSPSRCHPAATCYNTPGSFS  849 (1289)
T ss_pred             CCcceEEecCCCCCCccccCccccCcCCceEEEecCCceEEEeecCCccCCccccccccccCccccCCCceEecCCCcce
Confidence              23421     223443  23454444  344443 56999999999876            2465 789999999999


Q ss_pred             EecCCCCCcCC
Q psy6349         133 CHCICWDDLRN  143 (145)
Q Consensus       133 c~c~~~~~~~~  143 (145)
                      |+|++||.+++
T Consensus       850 C~C~pGy~GDG  860 (1289)
T KOG1214|consen  850 CRCQPGYYGDG  860 (1289)
T ss_pred             eecccCccCCC
Confidence            99999998865

>KOG1219|consensus

Probab=99.24  E-value=4.2e-11  Score=95.76  Aligned_cols=96  Identities=35%  Similarity=0.957  Sum_probs=85.9

Q ss_pred             CCCCCCCCCCCCCeeeeCC-CceEEeCCCCcccCCccccCCCCcCCCCCCCCEEeeCCCCeEeeCCCCCccC--------
Q psy6349          46 INECESDPCQNGATCQDLI-GGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKRE--------  116 (145)
Q Consensus        46 ~~~c~~~~c~~~~~c~~~~-~~~~c~c~~g~~g~~c~~~~~~c~~~~~~~~~~c~~~~~~~~C~c~~g~~~~--------  116 (145)
                      .+.|.+.||.+++.|.... +.|.|.|+..|.|+.|..+...|.+.+|..++.|+...+.|.|.|+.+|++.        
T Consensus      3864 ~d~C~~npCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG~~Ce~~Gi~ 3943 (4289)
T KOG1219|consen 3864 TDPCNDNPCQHGGTCISQPKGGYKCKCPSQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTGKRCEARGIS 3943 (4289)
T ss_pred             ccccccCcccCCCEecCCCCCceEEeCcccccCcccccccccccCCCCCCCCEEEecCCCeeEeCCCCccCceeeccccc
Confidence            3778999999999998764 6799999999999999988999999999999999999999999999999875        


Q ss_pred             ----CCCC-CCeeeeCCCceeEecCCCCCc
Q psy6349         117 ----ALCH-NGTCEDFGNSHRCHCICWDDL  141 (145)
Q Consensus       117 ----~~C~-~~~c~~~~g~~~c~c~~~~~~  141 (145)
                          +.|. +|+|.+..|+|+|-|-++|.+
T Consensus      3944 eCs~n~C~~gg~C~n~~gsf~CncT~g~~g 3973 (4289)
T KOG1219|consen 3944 ECSKNVCGTGGQCINIPGSFHCNCTPGILG 3973 (4289)
T ss_pred             ccccccccCCceeeccCCceEeccChhHhc
Confidence                3455 679999999999999988864

>KOG4289|consensus

Probab=99.05  E-value=7e-10  Score=86.18  Aligned_cols=85  Identities=46%  Similarity=1.194  Sum_probs=75.6

Q ss_pred             ceeeecCCCcccCCCCccCCCCCCCCCCCCCeeeeCCCceEEeCCCCcccCCccccC--CCCcCCCCCCCCEEeeCC-CC
Q psy6349          28 SHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNV--DDCKPNPCQNGGICHDLI-NH  104 (145)
Q Consensus        28 ~~~C~c~~g~~~~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~~~~--~~c~~~~~~~~~~c~~~~-~~  104 (145)
                      ..+|.|++||+|..|+++++.|-+.||.+++.|....+.|.|.|.++|.|..|..+.  ..|.+..|.+++.|++.. +.
T Consensus      1221 glrCrCPpGFTgd~CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~tGehCEvs~~agrCvpGvC~nggtC~~~~ngg 1300 (2531)
T KOG4289|consen 1221 GLRCRCPPGFTGDYCETEIDLCYSGPCGNNGRCRSREGGYTCECRPGFTGEHCEVSARAGRCVPGVCKNGGTCVNLLNGG 1300 (2531)
T ss_pred             ceeEeCCCCCCcccccchhHhhhcCCCCCCCceEEecCceeEEecCCccccceeeecccCccccceecCCCEEeecCCCc
Confidence            468999999999999999999999999999999999999999999999999997654  357788899999998754 67


Q ss_pred             eEeeCCCC
Q psy6349         105 FSCSCPSG  112 (145)
Q Consensus       105 ~~C~c~~g  112 (145)
                      +.|.|+.|
T Consensus      1301 f~c~Cp~g 1308 (2531)
T KOG4289|consen 1301 FCCHCPYG 1308 (2531)
T ss_pred             eeccCCCc
Confidence            88999987

>KOG1214|consensus

Probab=98.96  E-value=3.6e-09  Score=78.70  Aligned_cols=114  Identities=32%  Similarity=0.752  Sum_probs=83.0

Q ss_pred             ceeeecCCCCCCCCCCC-CCEeeeCCCceeeecCCCcc----cCCCCcc-----CCCCCCC--CCCCCC--eeeeC-CCc
Q psy6349           2 RNLIVSSPGLKREALCH-NGTCEDFGNSHRCHCMEGYT----GSYCSIE-----INECESD--PCQNGA--TCQDL-IGG   66 (145)
Q Consensus         2 ~~~~~~~~~~~~~~~c~-~~~c~~~~~~~~C~c~~g~~----~~~c~~~-----~~~c~~~--~c~~~~--~c~~~-~~~   66 (145)
                      ++|..++.++...+-|- +..|++-+++|+|.|..+|.    +..|..-     ++.|...  .|...+  .|+.. .+.
T Consensus       729 r~c~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g~h~C~i~g~a~c~~hGgs~  808 (1289)
T KOG1214|consen  729 RNCVDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITPPAPANPCEDGSHTCAIAGQARCVHHGGST  808 (1289)
T ss_pred             CCCCChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCCcceEEecCCCCCCccccCccccCcCCceEEEecCCce
Confidence            45667777888888885 68999999999888877764    3455321     1223221  232223  33333 357


Q ss_pred             eEEeCCCCccc--CCccccCCCCcCCCCCCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          67 YSCQCARGFQG--QNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        67 ~~c~c~~g~~g--~~c~~~~~~c~~~~~~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      |.|.|.+||.|  ..|. ++++|.++.|.....|.++.+++.|+|.+||.++
T Consensus       809 y~C~CLPGfsGDG~~c~-dvDeC~psrChp~A~CyntpgsfsC~C~pGy~GD  859 (1289)
T KOG1214|consen  809 YSCACLPGFSGDGHQCT-DVDECSPSRCHPAATCYNTPGSFSCRCQPGYYGD  859 (1289)
T ss_pred             EEEeecCCccCCccccc-cccccCccccCCCceEecCCCcceeecccCccCC
Confidence            99999999984  4565 6799999999999999999999999999999876

>KOG4289|consensus

Probab=98.79  E-value=8.3e-09  Score=80.54  Aligned_cols=76  Identities=34%  Similarity=0.895  Sum_probs=63.4

Q ss_pred             CCCceEEeCCCCcccCCccccCCCCcCCCCCCCCEEeeCCCCeEeeCCCCCccC--------CCCCC------CeeeeC-
Q psy6349          63 LIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKRE--------ALCHN------GTCEDF-  127 (145)
Q Consensus        63 ~~~~~~c~c~~g~~g~~c~~~~~~c~~~~~~~~~~c~~~~~~~~C~c~~g~~~~--------~~C~~------~~c~~~-  127 (145)
                      ..+.+.|.|++||.|..|...++.|-..+|.+++.|....+.|+|.|.++|+++        ..|.+      +.|.+. 
T Consensus      1218 pvnglrCrCPpGFTgd~CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~tGehCEvs~~agrCvpGvC~nggtC~~~~ 1297 (2531)
T KOG4289|consen 1218 PVNGLRCRCPPGFTGDYCETEIDLCYSGPCGNNGRCRSREGGYTCECRPGFTGEHCEVSARAGRCVPGVCKNGGTCVNLL 1297 (2531)
T ss_pred             ccCceeEeCCCCCCcccccchhHhhhcCCCCCCCceEEecCceeEEecCCccccceeeecccCccccceecCCCEEeecC
Confidence            346789999999999999988899988899999999999999999999999987        23433      345443 


Q ss_pred             CCceeEecCCC
Q psy6349         128 GNSHRCHCICW  138 (145)
Q Consensus       128 ~g~~~c~c~~~  138 (145)
                      .|+++|+|+.|
T Consensus      1298 nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1298 NGGFCCHCPYG 1308 (2531)
T ss_pred             CCceeccCCCc
Confidence            48889999988

>KOG1225|consensus

Probab=98.71  E-value=2.1e-07  Score=67.29  Aligned_cols=95  Identities=34%  Similarity=0.877  Sum_probs=69.2

Q ss_pred             eeecCCCcccCCCCccCCCCCCCCCCCCCeeeeCCCceEEeCCCCcccCCccccCCCCcCCCCCCCCEEeeCCCCeEeeC
Q psy6349          30 RCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSC  109 (145)
Q Consensus        30 ~C~c~~g~~~~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~~~~~~c~~~~~~~~~~c~~~~~~~~C~c  109 (145)
                      +|+|++||+|..|  ++..|... |+.++.++  .+  .|+|+++|.|..|+.  ..|. ..|..++.|+..    .|.|
T Consensus       266 ~CIC~~Gf~G~dC--~e~~Cp~~-cs~~g~~~--~g--~CiC~~g~~G~dCs~--~~cp-adC~g~G~Ci~G----~C~C  331 (525)
T KOG1225|consen  266 RCICPPGFTGDDC--DELVCPVD-CSGGGVCV--DG--ECICNPGYSGKDCSI--RRCP-ADCSGHGKCIDG----ECLC  331 (525)
T ss_pred             eEeCCCCCcCCCC--CcccCCcc-cCCCceec--CC--EeecCCCcccccccc--ccCC-ccCCCCCcccCC----ceEe
Confidence            7999999999999  34456544 66666664  22  699999999998852  3343 568888999733    7999


Q ss_pred             CCCCccC----CCCC-CCeeeeCCCceeEecCCCCCcCC
Q psy6349         110 PSGLKRE----ALCH-NGTCEDFGNSHRCHCICWDDLRN  143 (145)
Q Consensus       110 ~~g~~~~----~~C~-~~~c~~~~g~~~c~c~~~~~~~~  143 (145)
                      .+||.++    ..|+ +++|++  |   |.|++||++++
T Consensus       332 ~~Gy~G~~C~~~~C~~~g~cv~--g---C~C~~Gw~G~d  365 (525)
T KOG1225|consen  332 DEGYTGELCIQRACSGGGQCVN--G---CKCKKGWRGPD  365 (525)
T ss_pred             CCCCcCCcccccccCCCceecc--C---ceeccCccCCC
Confidence            9999986    2255 456653  2   99999998765

>KOG4260|consensus

Probab=98.52  E-value=4e-07  Score=59.97  Aligned_cols=124  Identities=31%  Similarity=0.779  Sum_probs=77.6

Q ss_pred             CCCC-CCEee-eC--CCceeeecCCCcccCCCCc-cCCCCCC-----C----CCC--CCCeeeeCCCceEE-eCCCCcc-
Q psy6349          15 ALCH-NGTCE-DF--GNSHRCHCMEGYTGSYCSI-EINECES-----D----PCQ--NGATCQDLIGGYSC-QCARGFQ-   76 (145)
Q Consensus        15 ~~c~-~~~c~-~~--~~~~~C~c~~g~~~~~c~~-~~~~c~~-----~----~c~--~~~~c~~~~~~~~c-~c~~g~~-   76 (145)
                      .+|. +|.|. ..  .|+..|.|..||.|+.|.. ++....+     .    .|.  ..+.|.... .-.| .|..||. 
T Consensus       150 r~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~~C~~~Csg~~-~k~C~kCkkGW~l  228 (350)
T KOG4260|consen  150 RPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHEGCLGVCSGES-SKGCSKCKKGWKL  228 (350)
T ss_pred             CCcCCCCcccCCCCCCCCCcccccCCCCCccccccchHHHHhhcccccchhhhhhhhhhcccCCCC-CCChhhhccccee
Confidence            4575 57886 22  3456899999999999841 1100000     0    011  111232111 1122 4666765 


Q ss_pred             -cCCccccCCCCc--CCCCCCCCEEeeCCCCeEeeCCCCCccC--------CCCC--CCeeeeCCCceeEecCCCCC
Q psy6349          77 -GQNCELNVDDCK--PNPCQNGGICHDLINHFSCSCPSGLKRE--------ALCH--NGTCEDFGNSHRCHCICWDD  140 (145)
Q Consensus        77 -g~~c~~~~~~c~--~~~~~~~~~c~~~~~~~~C~c~~g~~~~--------~~C~--~~~c~~~~g~~~c~c~~~~~  140 (145)
                       ...| .++++|.  +.+|..+..|+|+.|+|.|...+||...        ..|.  +..|.++.++|+|+|+.++.
T Consensus       229 de~gC-vDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~g~d~C~~~~d~~~~kn~~c~ni~~~~r~v~f~~~~  304 (350)
T KOG4260|consen  229 DEEGC-VDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKKGVDECQFCADVCASKNRPCMNIDGQYRCVCFSGLI  304 (350)
T ss_pred             ccccc-ccHHHHhcCCCCCChhheeecCCCceEecccccccCChHHhhhhhhhcccCCCCcccCCccEEEEecccce
Confidence             2234 3677775  4567788899999999999999999753        2343  67899999999999988764

>KOG1225|consensus

Probab=98.02  E-value=6.7e-05  Score=54.69  Aligned_cols=95  Identities=35%  Similarity=0.828  Sum_probs=63.0

Q ss_pred             eeecCCCcccCCCCccCCCCCCCCCCCCCeeeeCCCceEEeCCCCcccCCccccCCCCcCCCCCCCCEEeeCCCCeEeeC
Q psy6349          30 RCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSC  109 (145)
Q Consensus        30 ~C~c~~g~~~~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~~~~~~c~~~~~~~~~~c~~~~~~~~C~c  109 (145)
                      .|.|..+|.++.|.  ...|.. .|...+.|+    .-+|+|.++|.|.+|..  ..|... |..++.+++.    +|.|
T Consensus       235 ic~c~~~~~g~~c~--~~~C~~-~c~~~g~c~----~G~CIC~~Gf~G~dC~e--~~Cp~~-cs~~g~~~~g----~CiC  300 (525)
T KOG1225|consen  235 ICECPEGYFGPLCS--TIYCPG-GCTGRGQCV----EGRCICPPGFTGDDCDE--LVCPVD-CSGGGVCVDG----ECIC  300 (525)
T ss_pred             eeecCCceeCCccc--cccCCC-CCcccceEe----CCeEeCCCCCcCCCCCc--ccCCcc-cCCCceecCC----Eeec
Confidence            46777777777663  233322 233334554    23699999999999952  445444 6666676544    8999


Q ss_pred             CCCCccC--------CCCC-CCeeeeCCCceeEecCCCCCcC
Q psy6349         110 PSGLKRE--------ALCH-NGTCEDFGNSHRCHCICWDDLR  142 (145)
Q Consensus       110 ~~g~~~~--------~~C~-~~~c~~~~g~~~c~c~~~~~~~  142 (145)
                      .++|.++        ..|. ++.|.+  |  +|.|.+||++.
T Consensus       301 ~~g~~G~dCs~~~cpadC~g~G~Ci~--G--~C~C~~Gy~G~  338 (525)
T KOG1225|consen  301 NPGYSGKDCSIRRCPADCSGHGKCID--G--ECLCDEGYTGE  338 (525)
T ss_pred             CCCccccccccccCCccCCCCCcccC--C--ceEeCCCCcCC
Confidence            9999986        2355 678873  3  69999999864

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=98.02  E-value=9.9e-06  Score=38.83  Aligned_cols=33  Identities=30%  Similarity=0.551  Sum_probs=27.6

Q ss_pred             ecCCCCCCCCCCC-CCEeeeCCCceeeecCCCcc
Q psy6349           6 VSSPGLKREALCH-NGTCEDFGNSHRCHCMEGYT   38 (145)
Q Consensus         6 ~~~~~~~~~~~c~-~~~c~~~~~~~~C~c~~g~~   38 (145)
                      ++++|....+.|. ++.|++..|+|.|.|++||.
T Consensus         1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~   34 (42)
T PF07645_consen    1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYE   34 (42)
T ss_dssp             ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred             CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence            4677888888886 57899999999999999887

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>KOG1217|consensus

Probab=98.01  E-value=0.00011  Score=53.07  Aligned_cols=124  Identities=37%  Similarity=0.906  Sum_probs=83.0

Q ss_pred             CEeeeC---CCceeeecCCCcccCCCCccCCCCCC--CCCCCCCeeeeCCCceEEeCCCCcccCCcccc-----------
Q psy6349          20 GTCEDF---GNSHRCHCMEGYTGSYCSIEINECES--DPCQNGATCQDLIGGYSCQCARGFQGQNCELN-----------   83 (145)
Q Consensus        20 ~~c~~~---~~~~~C~c~~g~~~~~c~~~~~~c~~--~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~~~-----------   83 (145)
                      +.|...   ...+.|.|..+|.+..+....+.|..  .+|..+..|.+..+.|.|.|..+|.+..+...           
T Consensus       140 ~~c~~~~~~~~~~~c~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~~~~~~~~~~~c~~~~~  219 (487)
T KOG1217|consen  140 GSCSNGPGSVGPFRCSCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGSTCETTGNGGTCVDSVA  219 (487)
T ss_pred             hhhcCCCCCCCceeeeeCCCcccccccccccccccCCCCcCCCcccccCCCCeeEeCCCCccCCcCcCCCCCceEeccee
Confidence            455543   24678999999998877533356763  34777888888888899999999986655421           


Q ss_pred             --------CCCCcC--CCCCCC-CEEeeCCCCeEeeCCCCCccCC--------------CCC-CCeeeeCCCceeEecCC
Q psy6349          84 --------VDDCKP--NPCQNG-GICHDLINHFSCSCPSGLKREA--------------LCH-NGTCEDFGNSHRCHCIC  137 (145)
Q Consensus        84 --------~~~c~~--~~~~~~-~~c~~~~~~~~C~c~~g~~~~~--------------~C~-~~~c~~~~g~~~c~c~~  137 (145)
                              ...+..  ..+... +.|.+..+.+.|.++++|.+..              .|. ++.|.+..+.|.|.|++
T Consensus       220 ~~~~~g~~~~~c~~~~~~~~~~~~~c~~~~~~~~C~~~~g~~~~~~~~~~~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~  299 (487)
T KOG1217|consen  220 CSCPPGARGPECEVSIVECASGDGTCVNTVGSYTCRCPEGYTGDACVTCVDVDSCALIASCPNGGTCVNVPGSYRCTCPP  299 (487)
T ss_pred             ccCCCCCCCCCcccccccccCCCCcccccCCceeeeCCCCccccccceeeeccccCCCCccCCCCeeecCCCcceeeCCC
Confidence                    011110  112211 6677777778898888876431              255 56888888889999999


Q ss_pred             CCCcCC
Q psy6349         138 WDDLRN  143 (145)
Q Consensus       138 ~~~~~~  143 (145)
                      +|.+..
T Consensus       300 g~~g~~  305 (487)
T KOG1217|consen  300 GFTGRL  305 (487)
T ss_pred             CCCCCC
Confidence            998764

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=97.77  E-value=2.5e-05  Score=48.92  Aligned_cols=125  Identities=28%  Similarity=0.654  Sum_probs=75.0

Q ss_pred             CCCCCCEeeeCCCceeeecCCCcc---cCCCCccCCCCC-----CCCCCCCCeeeeCC-----CceEEeCCCCcccC--C
Q psy6349          15 ALCHNGTCEDFGNSHRCHCMEGYT---GSYCSIEINECE-----SDPCQNGATCQDLI-----GGYSCQCARGFQGQ--N   79 (145)
Q Consensus        15 ~~c~~~~c~~~~~~~~C~c~~g~~---~~~c~~~~~~c~-----~~~c~~~~~c~~~~-----~~~~c~c~~g~~g~--~   79 (145)
                      ..|.+|..++++..|.|.|..||+   ...|+ ....|.     ..+|...+.|....     ..|.|.|..+|.-.  .
T Consensus         6 T~CKNG~LiQMSNHfEC~Cnegfvl~~EntCE-~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~v   84 (197)
T PF06247_consen    6 TICKNGYLIQMSNHFECKCNEGFVLKNENTCE-EKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQGV   84 (197)
T ss_dssp             ---BTEEEEEESSEEEEEESTTEEEEETTEEE-E----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSSS
T ss_pred             ccccCCEEEEccCceEEEcCCCcEEccccccc-cceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCCe
Confidence            467889999999999999999997   34454 333443     24677777787654     57999999999622  2


Q ss_pred             ccccCCCCcCCCCCCCCEEeeCC---CCeEeeCCCCCccC----------CC----CC-CCeeeeCCCceeEecCCCCCc
Q psy6349          80 CELNVDDCKPNPCQNGGICHDLI---NHFSCSCPSGLKRE----------AL----CH-NGTCEDFGNSHRCHCICWDDL  141 (145)
Q Consensus        80 c~~~~~~c~~~~~~~~~~c~~~~---~~~~C~c~~g~~~~----------~~----C~-~~~c~~~~g~~~c~c~~~~~~  141 (145)
                      |.  ...|....|. .+.|+...   ....|+|.-|+..+          ..    |. +..|....+-|+|.+..++.+
T Consensus        85 Cv--p~~C~~~~Cg-~GKCI~d~~~~~~~~CSC~IGkV~~dn~kCtk~G~T~C~LKCk~nE~CK~~~~~Y~C~~~~~~~~  161 (197)
T PF06247_consen   85 CV--PNKCNNKDCG-SGKCILDPDNPNNPTCSCNIGKVPDDNKKCTKTGETKCSLKCKENEECKLVDGYYKCVCKEGFPG  161 (197)
T ss_dssp             EE--EGGGSS---T-TEEEEEEEGGGSEEEEEE-TEEETTTTTESEEEE--------TTTEEEEEETTEEEEEE-TT-EE
T ss_pred             Ec--hhhcCceecC-CCeEEecCCCCCCceeEeeeceEeccCCcccCCCccceeeecCCCcceeeeCcEEEeecCCCCCC
Confidence            32  2344445565 56775332   23488888887622          23    33 568888999999999999876


Q ss_pred             CC
Q psy6349         142 RN  143 (145)
Q Consensus       142 ~~  143 (145)
                      ..
T Consensus       162 ~~  163 (197)
T PF06247_consen  162 DG  163 (197)
T ss_dssp             ET
T ss_pred             CC
Confidence            54

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>KOG1217|consensus

Probab=97.71  E-value=0.00054  Score=49.57  Aligned_cols=132  Identities=33%  Similarity=0.872  Sum_probs=87.5

Q ss_pred             eeecCCCCCCCCCCC-CCEeeeCCCceeeecCCCcccCCC--CccCCCCC----CCCCCCCCeee--eCCCceEEeCCCC
Q psy6349           4 LIVSSPGLKREALCH-NGTCEDFGNSHRCHCMEGYTGSYC--SIEINECE----SDPCQNGATCQ--DLIGGYSCQCARG   74 (145)
Q Consensus         4 ~~~~~~~~~~~~~c~-~~~c~~~~~~~~C~c~~g~~~~~c--~~~~~~c~----~~~c~~~~~c~--~~~~~~~c~c~~g   74 (145)
                      +..++.+....+ |. ++.|++..+.|.|.|.++|.+..+  ..+...|.    ..+|..+..|.  .....+.|.+..+
T Consensus       268 ~~~~~~C~~~~~-c~~~~~C~~~~~~~~C~C~~g~~g~~~~~~~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~  346 (487)
T KOG1217|consen  268 CVDVDSCALIAS-CPNGGTCVNVPGSYRCTCPPGFTGRLCTECVDVDECSPRNAGGPCANGGTCNTLGSFGGFRCACGPG  346 (487)
T ss_pred             eeeccccCCCCc-cCCCCeeecCCCcceeeCCCCCCCCCCccccccccccccccCCcCCCCcccccCCCCCCCCcCCCCC
Confidence            344556655544 65 479999888899999999998886  22334553    33455555662  2234567889888


Q ss_pred             cccCCccccCCCCcCCCCCCCCEEee-CCCCeEeeCCCCCcc-C----------CCCC-CCeeeeCCCceeEecCC
Q psy6349          75 FQGQNCELNVDDCKPNPCQNGGICHD-LINHFSCSCPSGLKR-E----------ALCH-NGTCEDFGNSHRCHCIC  137 (145)
Q Consensus        75 ~~g~~c~~~~~~c~~~~~~~~~~c~~-~~~~~~C~c~~g~~~-~----------~~C~-~~~c~~~~g~~~c~c~~  137 (145)
                      +.|..|....+.|....+...+.|.+ ..+.+.|.++.+|.+ .          ..|. .+.|.+..+++.|. +.
T Consensus       347 ~~g~~C~~~~~~C~~~~~~~~~~c~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~c~-~~  421 (487)
T KOG1217|consen  347 FTGRRCEDSNDECASSPCCPGGTCVNETPGSYRCACPAGFAGKANGDGVGCEDIDECSGCGDCVNGPGGGACT-PP  421 (487)
T ss_pred             CCCCccccCCccccCCccccCCEeccCCCCCeEecCCCccccCCccccccccccccccCCcceeccCCCCccc-cC
Confidence            88888863223676666777888988 688899999998765 2          1222 23455666667776 55

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=97.65  E-value=4.2e-05  Score=36.62  Aligned_cols=19  Identities=32%  Similarity=0.546  Sum_probs=9.4

Q ss_pred             CeeeeCCCceeEecCCCCC
Q psy6349         122 GTCEDFGNSHRCHCICWDD  140 (145)
Q Consensus       122 ~~c~~~~g~~~c~c~~~~~  140 (145)
                      +.|.|+.|+|+|.|++||.
T Consensus        16 ~~C~N~~Gsy~C~C~~Gy~   34 (42)
T PF07645_consen   16 GTCVNTEGSYSCSCPPGYE   34 (42)
T ss_dssp             SEEEEETTEEEEEESTTEE
T ss_pred             CEEEcCCCCEEeeCCCCcE
Confidence            4455555555555555444

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=97.40  E-value=0.00013  Score=33.59  Aligned_cols=26  Identities=35%  Similarity=0.605  Sum_probs=16.4

Q ss_pred             CCC-CCeeeeCCCceeEecCCCCCcCC
Q psy6349         118 LCH-NGTCEDFGNSHRCHCICWDDLRN  143 (145)
Q Consensus       118 ~C~-~~~c~~~~g~~~c~c~~~~~~~~  143 (145)
                      .|+ ++.|.++.++|.|+|++||.+++
T Consensus         7 ~C~~nA~C~~~~~~~~C~C~~Gy~GdG   33 (36)
T PF12947_consen    7 GCHPNATCTNTGGSYTCTCKPGYEGDG   33 (36)
T ss_dssp             GS-TTCEEEE-TTSEEEEE-CEEECCS
T ss_pred             CCCCCcEeecCCCCEEeECCCCCccCC
Confidence            455 67777777777777777777665

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.34  E-value=0.00017  Score=32.33  Aligned_cols=23  Identities=52%  Similarity=1.295  Sum_probs=10.0

Q ss_pred             CCCCCEEeeCC-CCeEeeCCCCCc
Q psy6349          92 CQNGGICHDLI-NHFSCSCPSGLK  114 (145)
Q Consensus        92 ~~~~~~c~~~~-~~~~C~c~~g~~  114 (145)
                      |.+++.|+... ..|.|.|++||.
T Consensus         6 C~n~g~C~~~~~~~y~C~C~~G~~   29 (32)
T PF00008_consen    6 CQNGGTCIDLPGGGYTCECPPGYT   29 (32)
T ss_dssp             STTTEEEEEESTSEEEEEEBTTEE
T ss_pred             CCCCeEEEeCCCCCEEeECCCCCc
Confidence            44444444433 344444444443

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.28  E-value=0.00027  Score=31.63  Aligned_cols=27  Identities=44%  Similarity=0.982  Sum_probs=17.6

Q ss_pred             CCCCCC-CEeeeCC-CceeeecCCCcccC
Q psy6349          14 EALCHN-GTCEDFG-NSHRCHCMEGYTGS   40 (145)
Q Consensus        14 ~~~c~~-~~c~~~~-~~~~C~c~~g~~~~   40 (145)
                      ..+|.| +.|++.. +.|.|.|.+||.|.
T Consensus         3 ~~~C~n~g~C~~~~~~~y~C~C~~G~~G~   31 (32)
T PF00008_consen    3 SNPCQNGGTCIDLPGGGYTCECPPGYTGK   31 (32)
T ss_dssp             TTSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred             CCcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence            346654 5777666 66777777777654

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=97.23  E-value=0.001  Score=30.88  Aligned_cols=18  Identities=50%  Similarity=0.949  Sum_probs=9.0

Q ss_pred             EeeeCCCceeeecCCCcc
Q psy6349          21 TCEDFGNSHRCHCMEGYT   38 (145)
Q Consensus        21 ~c~~~~~~~~C~c~~g~~   38 (145)
                      .|++..+.|.|.|..+|.
T Consensus        16 ~C~~~~g~~~C~C~~g~~   33 (39)
T smart00179       16 TCVNTVGSYRCECPPGYT   33 (39)
T ss_pred             EeECCCCCeEeECCCCCc
Confidence            455444445555555544

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=97.19  E-value=0.00024  Score=32.68  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=16.2

Q ss_pred             CeeeeCCCceeEecCCCCCcCCC
Q psy6349         122 GTCEDFGNSHRCHCICWDDLRNS  144 (145)
Q Consensus       122 ~~c~~~~g~~~c~c~~~~~~~~~  144 (145)
                      ..|.+..++|+|.|++||.|..|
T Consensus        10 h~C~~~~g~~~C~C~~Gy~L~~D   32 (36)
T PF14670_consen   10 HICVNTPGSYRCSCPPGYKLAED   32 (36)
T ss_dssp             SEEEEETTSEEEE-STTEEE-TT
T ss_pred             CCCccCCCceEeECCCCCEECcC
Confidence            36777888888888888887765

...

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=97.18  E-value=0.0012  Score=30.66  Aligned_cols=35  Identities=54%  Similarity=1.414  Sum_probs=28.5

Q ss_pred             CCCCCC-CCCCCCCeeeeCCCceEEeCCCCcc-cCCc
Q psy6349          46 INECES-DPCQNGATCQDLIGGYSCQCARGFQ-GQNC   80 (145)
Q Consensus        46 ~~~c~~-~~c~~~~~c~~~~~~~~c~c~~g~~-g~~c   80 (145)
                      +++|.. .+|..++.|.+..++|.|.|..+|. |..|
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~~g~~C   38 (39)
T smart00179        2 IDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNC   38 (39)
T ss_pred             cccCcCCCCcCCCCEeECCCCCeEeECCCCCccCCcC
Confidence            355655 6788778999999999999999998 7766

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=97.08  E-value=0.00049  Score=31.68  Aligned_cols=27  Identities=44%  Similarity=1.005  Sum_probs=18.1

Q ss_pred             CCCCCC-CCEeeeCCCceeeecCCCccc
Q psy6349          13 REALCH-NGTCEDFGNSHRCHCMEGYTG   39 (145)
Q Consensus        13 ~~~~c~-~~~c~~~~~~~~C~c~~g~~~   39 (145)
                      ..+.|+ ++.|.+..++|.|.|++||.|
T Consensus         4 ~~~~C~~nA~C~~~~~~~~C~C~~Gy~G   31 (36)
T PF12947_consen    4 NNGGCHPNATCTNTGGSYTCTCKPGYEG   31 (36)
T ss_dssp             GGGGS-TTCEEEE-TTSEEEEE-CEEEC
T ss_pred             CCCCCCCCcEeecCCCCEEeECCCCCcc
Confidence            445665 678888888888888888875

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=96.95  E-value=0.00074  Score=28.02  Aligned_cols=15  Identities=27%  Similarity=0.321  Sum_probs=11.7

Q ss_pred             ceeEecCCCCCcCCC
Q psy6349         130 SHRCHCICWDDLRNS  144 (145)
Q Consensus       130 ~~~c~c~~~~~~~~~  144 (145)
                      +|+|.|++||+|.++
T Consensus         1 sy~C~C~~Gy~l~~d   15 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPD   15 (24)
T ss_pred             CEEeeCCCCCcCCCC
Confidence            578899999988654

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=96.81  E-value=0.004  Score=28.44  Aligned_cols=19  Identities=53%  Similarity=1.004  Sum_probs=8.4

Q ss_pred             EeeeCCCceeeecCCCccc
Q psy6349          21 TCEDFGNSHRCHCMEGYTG   39 (145)
Q Consensus        21 ~c~~~~~~~~C~c~~g~~~   39 (145)
                      .|.+..+.|.|.|..+|.|
T Consensus        16 ~C~~~~~~~~C~C~~g~~g   34 (38)
T cd00054          16 TCVNTVGSYRCSCPPGYTG   34 (38)
T ss_pred             EeECCCCCeEeECCCCCcC
Confidence            4444444444444444443

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>smart00181 EGF Epidermal growth factor-like domain

Probab=96.46  E-value=0.0098  Score=26.79  Aligned_cols=25  Identities=48%  Similarity=0.975  Sum_probs=16.2

Q ss_pred             CCCCCCEeeeCCCceeeecCCCccc
Q psy6349          15 ALCHNGTCEDFGNSHRCHCMEGYTG   39 (145)
Q Consensus        15 ~~c~~~~c~~~~~~~~C~c~~g~~~   39 (145)
                      .+|.++.|.+..+.|.|.|..||.+
T Consensus         6 ~~C~~~~C~~~~~~~~C~C~~g~~g   30 (35)
T smart00181        6 GPCSNGTCINTPGSYTCSCPPGYTG   30 (35)
T ss_pred             CCCCCCEEECCCCCeEeECCCCCcc
Confidence            3454336776666777777777766

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=96.19  E-value=0.014  Score=26.45  Aligned_cols=24  Identities=46%  Similarity=1.222  Sum_probs=11.8

Q ss_pred             CCCCCEEeeCCCCeEeeCCCCCcc
Q psy6349          92 CQNGGICHDLINHFSCSCPSGLKR  115 (145)
Q Consensus        92 ~~~~~~c~~~~~~~~C~c~~g~~~  115 (145)
                      |..++.|.+..+.|.|.|+++|.+
T Consensus        11 C~~~~~C~~~~~~~~C~C~~g~~g   34 (38)
T cd00054          11 CQNGGTCVNTVGSYRCSCPPGYTG   34 (38)
T ss_pred             cCCCCEeECCCCCeEeECCCCCcC
Confidence            333444554445555555555543

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>KOG1226|consensus

Probab=96.12  E-value=0.068  Score=40.96  Aligned_cols=79  Identities=27%  Similarity=0.683  Sum_probs=46.7

Q ss_pred             eeecCCCcccCCCCccCC---------CCCC----CCCCCCCeeeeCCCceEEeCCCCcc----cCCccccCCCCcC---
Q psy6349          30 RCHCMEGYTGSYCSIEIN---------ECES----DPCQNGATCQDLIGGYSCQCARGFQ----GQNCELNVDDCKP---   89 (145)
Q Consensus        30 ~C~c~~g~~~~~c~~~~~---------~c~~----~~c~~~~~c~~~~~~~~c~c~~g~~----g~~c~~~~~~c~~---   89 (145)
                      .|.|.+||.|..|+...+         .|+.    .+|+..+.|.=    ..|.|.+...    |+.|.-+.-.|..   
T Consensus       479 ~C~C~~G~~G~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~C----GqC~C~~~~~~~i~G~fCECDnfsC~r~~g  554 (783)
T KOG1226|consen  479 QCRCDEGWLGKKCECSTDELSSSEEEDKCRENSDSPVCSGRGDCVC----GQCVCHKPDNGKIYGKFCECDNFSCERHKG  554 (783)
T ss_pred             ceecCCCCCCCcccCCccccCcHhHHhhccCCCCCCCcCCCCcEeC----CceEecCCCCCceeeeeeeccCcccccccC
Confidence            479999999999874322         2321    24555555531    1366655443    6666533333322   


Q ss_pred             CCCCCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          90 NPCQNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        90 ~~~~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      ..|..++.|.-.    +|.|.+||++.
T Consensus       555 ~lC~g~G~C~CG----~CvC~~GwtG~  577 (783)
T KOG1226|consen  555 VLCGGHGRCECG----RCVCNPGWTGS  577 (783)
T ss_pred             cccCCCCeEeCC----cEEcCCCCccC
Confidence            246777777443    78999999886

>KOG4260|consensus

Probab=96.00  E-value=0.006  Score=40.87  Aligned_cols=34  Identities=24%  Similarity=0.455  Sum_probs=17.6

Q ss_pred             eecCCCCCCCCCCC-CCEeeeCCCceeeecCCCcc
Q psy6349           5 IVSSPGLKREALCH-NGTCEDFGNSHRCHCMEGYT   38 (145)
Q Consensus         5 ~~~~~~~~~~~~c~-~~~c~~~~~~~~C~c~~g~~   38 (145)
                      .+++.|...+.+|. +..|+|+.|+|.|....||.
T Consensus       234 vDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~  268 (350)
T KOG4260|consen  234 VDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYK  268 (350)
T ss_pred             ccHHHHhcCCCCCChhheeecCCCceEeccccccc
Confidence            34445554555553 34555555555555555554

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=95.97  E-value=0.023  Score=25.33  Aligned_cols=20  Identities=35%  Similarity=0.439  Sum_probs=9.6

Q ss_pred             CeeeeCCCceeEecCCCCCc
Q psy6349         122 GTCEDFGNSHRCHCICWDDL  141 (145)
Q Consensus       122 ~~c~~~~g~~~c~c~~~~~~  141 (145)
                      +.|.+..+.|.|.|+.||.+
T Consensus        12 ~~C~~~~~~~~C~C~~g~~g   31 (36)
T cd00053          12 GTCVNTPGSYRCVCPPGYTG   31 (36)
T ss_pred             CEEecCCCCeEeECCCCCcc
Confidence            44444444455555555443

>smart00181 EGF Epidermal growth factor-like domain

Probab=95.93  E-value=0.024  Score=25.44  Aligned_cols=19  Identities=42%  Similarity=1.184  Sum_probs=8.9

Q ss_pred             eeeeCCCceEEeCCCCccc
Q psy6349          59 TCQDLIGGYSCQCARGFQG   77 (145)
Q Consensus        59 ~c~~~~~~~~c~c~~g~~g   77 (145)
                      .|.+..+.+.|.|..+|.+
T Consensus        12 ~C~~~~~~~~C~C~~g~~g   30 (35)
T smart00181       12 TCINTPGSYTCSCPPGYTG   30 (35)
T ss_pred             EEECCCCCeEeECCCCCcc
Confidence            4444444445555554443

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=95.80  E-value=0.0089  Score=27.45  Aligned_cols=23  Identities=35%  Similarity=0.795  Sum_probs=17.8

Q ss_pred             CCCEEeeCCCCeEeeCCCCCccC
Q psy6349          94 NGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        94 ~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      ..+.|++..++|+|.|++||...
T Consensus         8 C~h~C~~~~g~~~C~C~~Gy~L~   30 (36)
T PF14670_consen    8 CSHICVNTPGSYRCSCPPGYKLA   30 (36)
T ss_dssp             SSSEEEEETTSEEEE-STTEEE-
T ss_pred             cCCCCccCCCceEeECCCCCEEC
Confidence            45688888999999999999864

...

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=95.77  E-value=0.0061  Score=21.38  Aligned_cols=12  Identities=50%  Similarity=1.431  Sum_probs=6.7

Q ss_pred             eecCCCcccCCC
Q psy6349          31 CHCMEGYTGSYC   42 (145)
Q Consensus        31 C~c~~g~~~~~c   42 (145)
                      |.|++||+|..|
T Consensus         2 C~C~~G~~G~~C   13 (13)
T PF12661_consen    2 CQCPPGWTGPNC   13 (13)
T ss_dssp             EEE-TTEETTTT
T ss_pred             ccCcCCCcCCCC
Confidence            566666666544

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=95.63  E-value=0.04  Score=24.48  Aligned_cols=20  Identities=55%  Similarity=1.062  Sum_probs=9.5

Q ss_pred             CEeeeCCCceeeecCCCccc
Q psy6349          20 GTCEDFGNSHRCHCMEGYTG   39 (145)
Q Consensus        20 ~~c~~~~~~~~C~c~~g~~~   39 (145)
                      +.|.+..+.|.|.|..+|.+
T Consensus        12 ~~C~~~~~~~~C~C~~g~~g   31 (36)
T cd00053          12 GTCVNTPGSYRCVCPPGYTG   31 (36)
T ss_pred             CEEecCCCCeEeECCCCCcc
Confidence            44544444444555544443

>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein

Probab=95.25  E-value=0.0086  Score=27.49  Aligned_cols=24  Identities=21%  Similarity=0.479  Sum_probs=15.1

Q ss_pred             CCeeeeCC-CceeEecCCCCCcCCC
Q psy6349         121 NGTCEDFG-NSHRCHCICWDDLRNS  144 (145)
Q Consensus       121 ~~~c~~~~-g~~~c~c~~~~~~~~~  144 (145)
                      ++.|.+.. |.+.|+|.+||+..++
T Consensus        10 NA~C~~~~dG~eecrCllgyk~~~~   34 (37)
T PF12946_consen   10 NAGCFRYDDGSEECRCLLGYKKVGG   34 (37)
T ss_dssp             TEEEEEETTSEEEEEE-TTEEEETT
T ss_pred             CcccEEcCCCCEEEEeeCCccccCC
Confidence            66676655 6666777777766543

MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=94.80  E-value=0.054  Score=24.12  Aligned_cols=26  Identities=46%  Similarity=1.057  Sum_probs=19.0

Q ss_pred             CCCC-CCEeeeCCCceeeecCCCcccCCC
Q psy6349          15 ALCH-NGTCEDFGNSHRCHCMEGYTGSYC   42 (145)
Q Consensus        15 ~~c~-~~~c~~~~~~~~C~c~~g~~~~~c   42 (145)
                      ..|. +|+|+...  ..|.|.++|.|..|
T Consensus         6 ~~C~~~G~C~~~~--g~C~C~~g~~G~~C   32 (32)
T PF07974_consen    6 NICSGHGTCVSPC--GRCVCDSGYTGPDC   32 (32)
T ss_pred             CccCCCCEEeCCC--CEEECCCCCcCCCC
Confidence            3575 58898652  37999999988765

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>KOG0994|consensus

Probab=93.99  E-value=0.38  Score=39.06  Aligned_cols=13  Identities=31%  Similarity=1.004  Sum_probs=10.9

Q ss_pred             eeecCCCcccCCC
Q psy6349          30 RCHCMEGYTGSYC   42 (145)
Q Consensus        30 ~C~c~~g~~~~~c   42 (145)
                      .|.|++..+|..|
T Consensus       783 qCqCkPnVVGR~C  795 (1758)
T KOG0994|consen  783 QCQCKPNVVGRRC  795 (1758)
T ss_pred             eecccCccccccc
Confidence            6888888888877

>PHA02887 EGF-like protein; Provisional

Probab=91.97  E-value=0.2  Score=29.28  Aligned_cols=27  Identities=41%  Similarity=0.979  Sum_probs=15.2

Q ss_pred             CCCCEeeeC--CCceeeecCCCcccCCCC
Q psy6349          17 CHNGTCEDF--GNSHRCHCMEGYTGSYCS   43 (145)
Q Consensus        17 c~~~~c~~~--~~~~~C~c~~g~~~~~c~   43 (145)
                      |.||.|.-.  .....|.|..||.|.+|+
T Consensus        94 CiHG~C~yI~dL~epsCrC~~GYtG~RCE  122 (126)
T PHA02887         94 CINGECMNIIDLDEKFCICNKGYTGIRCD  122 (126)
T ss_pred             eeCCEEEccccCCCceeECCCCcccCCCC
Confidence            445555422  234567777777776664

>KOG1226|consensus

Probab=91.96  E-value=0.58  Score=36.21  Aligned_cols=67  Identities=31%  Similarity=0.728  Sum_probs=38.0

Q ss_pred             EEeCCCCcccCCccccC---------CCCc----CCCCCCCCEEeeCCCCeEeeCCCCCc----cC--------------
Q psy6349          68 SCQCARGFQGQNCELNV---------DDCK----PNPCQNGGICHDLINHFSCSCPSGLK----RE--------------  116 (145)
Q Consensus        68 ~c~c~~g~~g~~c~~~~---------~~c~----~~~~~~~~~c~~~~~~~~C~c~~g~~----~~--------------  116 (145)
                      .|.|.+||.|+.|.-..         +.|.    ...|...+.|.=.    +|.|.+...    +.              
T Consensus       479 ~C~C~~G~~G~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CG----qC~C~~~~~~~i~G~fCECDnfsC~r~~g  554 (783)
T KOG1226|consen  479 QCRCDEGWLGKKCECSTDELSSSEEEDKCRENSDSPVCSGRGDCVCG----QCVCHKPDNGKIYGKFCECDNFSCERHKG  554 (783)
T ss_pred             ceecCCCCCCCcccCCccccCcHhHHhhccCCCCCCCcCCCCcEeCC----ceEecCCCCCceeeeeeeccCcccccccC
Confidence            47899999888764211         1221    1246666666432    566655433    11              


Q ss_pred             CCCC-CCeeeeCCCceeEecCCCCCcC
Q psy6349         117 ALCH-NGTCEDFGNSHRCHCICWDDLR  142 (145)
Q Consensus       117 ~~C~-~~~c~~~~g~~~c~c~~~~~~~  142 (145)
                      ..|. +++|.=  |  +|+|.+||++.
T Consensus       555 ~lC~g~G~C~C--G--~CvC~~GwtG~  577 (783)
T KOG1226|consen  555 VLCGGHGRCEC--G--RCVCNPGWTGS  577 (783)
T ss_pred             cccCCCCeEeC--C--cEEcCCCCccC
Confidence            2455 555532  2  59999999875

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=90.04  E-value=0.31  Score=32.10  Aligned_cols=23  Identities=22%  Similarity=0.254  Sum_probs=20.0

Q ss_pred             CeeeeCCCceeEecCCCCCcCCC
Q psy6349         122 GTCEDFGNSHRCHCICWDDLRNS  144 (145)
Q Consensus       122 ~~c~~~~g~~~c~c~~~~~~~~~  144 (145)
                      ..|.+..|+|.|.|..||++..+
T Consensus       199 ~~C~~~~g~~~c~c~~g~~~~~~  221 (224)
T cd01475         199 QVCISTPGSYLCACTEGYALLED  221 (224)
T ss_pred             ceEEcCCCCEEeECCCCccCCCC
Confidence            47999999999999999998654

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=89.88  E-value=0.35  Score=28.80  Aligned_cols=27  Identities=37%  Similarity=0.907  Sum_probs=18.0

Q ss_pred             CCCCEeeeC--CCceeeecCCCcccCCCC
Q psy6349          17 CHNGTCEDF--GNSHRCHCMEGYTGSYCS   43 (145)
Q Consensus        17 c~~~~c~~~--~~~~~C~c~~g~~~~~c~   43 (145)
                      |.||.|.-.  ...+.|.|..||+|.+|+
T Consensus        53 ClHG~C~yI~dl~~~~CrC~~GYtGeRCE   81 (139)
T PHA03099         53 CLHGDCIHARDIDGMYCRCSHGYTGIRCQ   81 (139)
T ss_pred             eECCEEEeeccCCCceeECCCCccccccc
Confidence            455666533  245678888888888885

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=88.93  E-value=0.69  Score=30.47  Aligned_cols=33  Identities=18%  Similarity=0.398  Sum_probs=24.4

Q ss_pred             cCCCCcCCCCCCCCEEeeCCCCeEeeCCCCCcc
Q psy6349          83 NVDDCKPNPCQNGGICHDLINHFSCSCPSGLKR  115 (145)
Q Consensus        83 ~~~~c~~~~~~~~~~c~~~~~~~~C~c~~g~~~  115 (145)
                      +.++|..........|.++.|+|.|.|.+||..
T Consensus       186 ~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~  218 (224)
T cd01475         186 VPDLCATLSHVCQQVCISTPGSYLCACTEGYAL  218 (224)
T ss_pred             CchhhcCCCCCccceEEcCCCCEEeECCCCccC
Confidence            455665433334468999999999999999975

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>KOG0994|consensus

Probab=87.99  E-value=1.2  Score=36.51  Aligned_cols=18  Identities=22%  Similarity=0.840  Sum_probs=11.2

Q ss_pred             EEeeCCCCeEeeCCCCCccC
Q psy6349          97 ICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        97 ~c~~~~~~~~C~c~~g~~~~  116 (145)
                      .|....|  +|.|.+||.+.
T Consensus      1078 qCN~ftG--QCqCkpGfGGR 1095 (1758)
T KOG0994|consen 1078 QCNEFTG--QCQCKPGFGGR 1095 (1758)
T ss_pred             ccccccc--ceeccCCCCCc
Confidence            4433334  68888888653

>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet

Probab=83.11  E-value=0.92  Score=20.38  Aligned_cols=13  Identities=23%  Similarity=0.340  Sum_probs=8.3

Q ss_pred             eEecCCCCCcCCC
Q psy6349         132 RCHCICWDDLRNS  144 (145)
Q Consensus       132 ~c~c~~~~~~~~~  144 (145)
                      .|.|++||-|..+
T Consensus        19 ~C~CPeGyIlde~   31 (34)
T PF09064_consen   19 QCFCPEGYILDEG   31 (34)
T ss_pred             ceeCCCceEecCC
Confidence            5777777766544

Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane

>KOG3512|consensus

Probab=83.03  E-value=14  Score=27.50  Aligned_cols=28  Identities=21%  Similarity=0.597  Sum_probs=19.2

Q ss_pred             CCC-C-CEeeeC-CCceeeecCCCcccCCCC
Q psy6349          16 LCH-N-GTCEDF-GNSHRCHCMEGYTGSYCS   43 (145)
Q Consensus        16 ~c~-~-~~c~~~-~~~~~C~c~~g~~~~~c~   43 (145)
                      +|+ | ..|+-- .+...|.|...-.|+.|.
T Consensus       279 KCNgHAs~Cv~d~~~~ltCdC~HNTaGPdCg  309 (592)
T KOG3512|consen  279 KCNGHASRCVMDESSHLTCDCEHNTAGPDCG  309 (592)
T ss_pred             eecCccceeeeccCCceEEecccCCCCCCcc
Confidence            354 4 367744 445889999888888874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	145
2vj3_A	135	Human Notch-1 Egfs 11-13 Length = 135		7e-22
1toz_A	116	Nmr Structure Of The Human Notch-1 Ligand Binding R		1e-21
4d90_A	143	Crystal Structure Of Del-1 Egf Domains Length = 143		2e-13
1ezq_B	134	Crystal Structure Of Human Coagulation Factor Xa Co		4e-07
1p0s_L	138	Crystal Structure Of Blood Coagulation Factor Xa In		5e-07
1nfu_B	195	Crystal Structure Of Human Coagulation Factor Xa Co		6e-07
1ioe_L	96	Human Coagulation Factor Xa In Complex With M55532		9e-07
1g2l_B	94	Factor Xa Inhibitor Complex Length = 94		1e-06
3ens_A	94	Crystal Structure Of Human Fxa In Complex With Meth		1e-06
2h9e_L	149	Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMP		1e-06
3h5c_B	317	X-Ray Structure Of Protein Z-Protein Z Inhibitor Co		1e-06
1z6j_L	142	Crystal Structure Of A Ternary Complex Of Factor Vi		2e-06
1w0y_L	142	Tf7a_3771 Complex Length = 142		2e-06
1dan_L	152	Complex Of Active Site Inhibited Human Blood Coagul		2e-06
1o5d_L	152	Dissecting And Designing Inhibitor Selectivity Dete		2e-06
1dva_L	101	Crystal Structure Of The Complex Between The Peptid		3e-06
1j9c_L	95	Crystal Structure Of Tissue Factor-Factor Viia Comp		4e-06
1edm_B	39	Epidermal Growth Factor-Like Domain From Human Fact		4e-06
2puq_L	94	Crystal Structure Of Active Site Inhibited Coagulat		5e-06
1fax_L	96	Coagulation Factor Xa Inhibitor Complex Length = 96		5e-06
1qfk_L	104	Structure Of Human Factor Viia And Its Implications		6e-06
1xka_L	95	Factor Xa Complexed With A Synthetic Inhibitor Fx-2		6e-06
1x7a_L	146	Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)		1e-05
1x7a_L	146	Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)		4e-04
2rqz_A	38	Structure Of Sugar Modified Epidermal Growth Factor		2e-05
1apo_A	42	Three-Dimensional Structure Of The Apo Form Of The		3e-05
1f7e_A	46	The First Egf-Like Domain From Human Blood Coagulat		4e-05
1pfx_L	146	Porcine Factor Ixa Length = 146		5e-05
1emn_A	82	Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epide		5e-05
1whe_A	86	Coagulation Factor, Nmr, 20 Structures Length = 86		1e-04
1ccf_A	42	How An Epidermal Growth Factor (Egf)-Like Domain Bi		2e-04
1bf9_A	41	N-Terminal Egf-Like Domain From Human Factor Vii, N		4e-04

>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13 Length = 135

Iteration: 1
 Score = 99.4 bits (246), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 62/97 (63%)
Query: 18  HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQG 77
           H G C +   S  C C++GYTG  C I++NEC S+PCQN ATC D IG + C C  G++G
Sbjct: 17  HAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEG 76
Query: 78  QNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK 114
            +CE+N D+C  +PC + G C D IN F C CP+G  
Sbjct: 77  VHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFT 113

>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region Length = 116

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 62/97 (63%)
Query: 18  HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQG 77
           H G C +   S  C C++GYTG  C I++NEC S+PCQN ATC D IG + C C  G++G
Sbjct: 15  HAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEG 74
Query: 78  QNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLK 114
            +CE+N D+C  +PC + G C D IN F C CP+G  
Sbjct: 75  VHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFT 111

>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains Length = 143

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 19/102 (18%)
Query: 28  SHRCHCMEGYTGSYCS--IEI----------NECESDPCQNGATCQ-------DLIGGYS 68
           S  C C +G+T   CS  +E+            C  +PC NG TC+       D   GY 
Sbjct: 22  SFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYV 81
Query: 69  CQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCP 110
           C+C RGF G +C+ N+++C+  PC+NGGIC DL+ ++SC CP
Sbjct: 82  CKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECP 123

>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed With Rpr128515 Length = 134

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 47  NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD-CKPNPCQNGGICHDLINHF 105
           ++CE+ PCQN   C+D +G Y+C C  GF+G+NCEL     C  +       CH+  N  
Sbjct: 43  DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 102
Query: 106 SCSCPSGLKREALCHNG 122
            CSC  G     L  NG
Sbjct: 103 VCSCARGY---TLADNG 116

>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In Complex With Ecotin M84r Length = 138

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 47  NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD-CKPNPCQNGGICHDLINHF 105
           ++CE+ PCQN   C+D +G Y+C C  GF+G+NCEL     C  +       CH+  N  
Sbjct: 48  DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 107
Query: 106 SCSCPSG 112
            CSC  G
Sbjct: 108 VCSCARG 114

>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed With Rpr132747 Length = 195

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 47  NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD-CKPNPCQNGGICHDLINHF 105
           ++CE+ PCQN   C+D +G Y+C C  GF+G+NCEL     C  +       CH+  N  
Sbjct: 43  DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 102
Query: 106 SCSCPSGLKREALCHNG 122
            CSC  G     L  NG
Sbjct: 103 VCSCARGY---TLADNG 116

>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532 Length = 96

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 47  NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD-CKPNPCQNGGICHDLINHF 105
           ++CE+ PCQN   C+D +G Y+C C  GF+G+NCEL     C  +       CH+  N  
Sbjct: 5   DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 64
Query: 106 SCSCPSG 112
            CSC  G
Sbjct: 65  VCSCARG 71

>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex Length = 94

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 47  NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD-CKPNPCQNGGICHDLINHF 105
           ++CE+ PCQN   C+D +G Y+C C  GF+G+NCEL     C  +       CH+  N  
Sbjct: 3   DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 62
Query: 106 SCSCPSG 112
            CSC  G
Sbjct: 63  VCSCARG 69

>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl (2z)-3-[(3- Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2- oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate Length = 94

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 47  NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD-CKPNPCQNGGICHDLINHF 105
           ++CE+ PCQN   C+D +G Y+C C  GF+G+NCEL     C  +       CH+  N  
Sbjct: 4   DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 63
Query: 106 SCSCPSG 112
            CSC  G
Sbjct: 64  VCSCARG 70

>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX Length = 149

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 47  NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD-CKPNPCQNGGICHDLINHF 105
           ++CE+ PCQN   C+D +G Y+C C  GF+G+NCEL     C  +       CH+  N  
Sbjct: 3   DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 62
Query: 106 SCSCPSGLKREALCHNG 122
            CSC  G     L  NG
Sbjct: 63  VCSCARGY---TLADNG 76

>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex Length = 317

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 47  NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKP---NPCQNGGICHDLIN 103
           + C S PC +  +CQD I GY+C C+ G++G NCEL  ++C P   + CQ+   C     
Sbjct: 6   SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQE 63
Query: 104 HFSCSCPSGLK 114
            ++CSC  G +
Sbjct: 64  SYTCSCAQGYR 74

>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor Viia/tissue Factor/pyrazinone Inhibitor Length = 142

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 47  NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFS 106
           ++C S PCQNG +C+D +  Y C C   F+G+NCE + DD      +NGG C        
Sbjct: 48  DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQY----- 101
Query: 107 CSCPSGLKREALCHNG 122
           CS  +G KR   CH G
Sbjct: 102 CSDHTGTKRSCRCHEG 117

>pdb|1W0Y|L Chain L, Tf7a_3771 Complex Length = 142

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 47  NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFS 106
           ++C S PCQNG +C+D +  Y C C   F+G+NCE + DD      +NGG C        
Sbjct: 48  DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQY----- 101
Query: 107 CSCPSGLKREALCHNG 122
           CS  +G KR   CH G
Sbjct: 102 CSDHTGTKRSCRCHEG 117

>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation Factor Viia With Human Recombinant Soluble Tissue Factor Length = 152

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 47  NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFS 106
           ++C S PCQNG +C+D +  Y C C   F+G+NCE + DD      +NGG C        
Sbjct: 48  DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQY----- 101
Query: 107 CSCPSGLKREALCHNG 122
           CS  +G KR   CH G
Sbjct: 102 CSDHTGTKRSCRCHEG 117

>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (Ala190 Upa) Length = 152

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 47  NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFS 106
           ++C S PCQNG +C+D +  Y C C   F+G+NCE + DD      +NGG C        
Sbjct: 48  DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQY----- 101
Query: 107 CSCPSGLKREALCHNG 122
           CS  +G KR   CH G
Sbjct: 102 CSDHTGTKRSCRCHEG 117

>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide Exosite Inhibitor E-76 And Coagulation Factor Viia Length = 101

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 47  NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFS 106
           ++C S PCQNG +C+D +  Y C C   F+G+NCE + DD      +NGG C        
Sbjct: 7   DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQY----- 60
Query: 107 CSCPSGLKREALCHNG 122
           CS  +G KR   CH G
Sbjct: 61  CSDHTGTKRSCRCHEG 76

>pdb|1J9C|L Chain L, Crystal Structure Of Tissue Factor-Factor Viia Complex Length = 95

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 47  NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFS 106
           ++C S PCQNG +C+D +  Y C C   F+G+NCE + DD      +NGG C        
Sbjct: 1   DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQY----- 54
Query: 107 CSCPSGLKREALCHNG 122
           CS  +G KR   CH G
Sbjct: 55  CSDHTGTKRSCRCHEG 70

>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix Length = 39

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 29/39 (74%)
Query: 44 IEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCEL 82
          ++ ++CES+PC NG +C+D I  Y C C  GF+G+NCEL
Sbjct: 1  VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39

>pdb|2PUQ|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation Factor Viia In Complex With Soluble Tissue Factor Length = 94

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 48  ECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSC 107
           +C S PCQNG +C+D +  Y C C   F+G+NCE + DD      +NGG C        C
Sbjct: 1   QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQY-----C 54
Query: 108 SCPSGLKREALCHNG 122
           S  +G KR   CH G
Sbjct: 55  SDHTGTKRSCRCHEG 69

>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex Length = 96

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 47  NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD-CKPNPCQNGGICHDLINHF 105
           ++CE+ PCQN   C+D +G Y+C C  GF+G+NCEL     C  +       CH+     
Sbjct: 5   DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQASV 64
Query: 106 SCSCPSG 112
            CSC  G
Sbjct: 65  VCSCARG 71

>pdb|1QFK|L Chain L, Structure Of Human Factor Viia And Its Implications For The Triggering Of Blood Coagulation Length = 104

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 48  ECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSC 107
           +C S PCQNG +C+D +  Y C C   F+G+NCE + DD      +NGG C        C
Sbjct: 1   QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG-CEQY-----C 54
Query: 108 SCPSGLKREALCHNG 122
           S  +G KR   CH G
Sbjct: 55  SDHTGTKRSCRCHEG 69

>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor Fx-2212a,(2s)-(3'- Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid Length = 95

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 47  NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD-CKPNPCQNGGICHDLINHF 105
           ++CE+ PCQN   C+  +G Y+C C  GF+G+NCEL     C  +       CH+  N  
Sbjct: 4   DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSV 63
Query: 106 SCSCPSG 112
            CSC  G
Sbjct: 64  VCSCARG 70

>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino) Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2- Fluorophenyl]- 3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide Length = 146

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 44 IEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNV 84
          ++ ++CE +PC NG  C+D I  Y C C  GF+G+NCEL+ 
Sbjct: 46 VDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDA 86

>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino) Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2- Fluorophenyl]- 3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide Length = 146

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 85  DDCKPNPCQNGGICHDLINHFSCSCPSGL-----KREALCH--NGTCEDF 127
           D C+PNPC NGG+C D IN + C C  G      + +A C+  NG C+ F
Sbjct: 49  DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQF 98

>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like Repeat 12 Of Mouse Notch-1 Receptor Length = 38

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 45 EINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCEL 82
          ++NEC S+PCQN ATC D IG + C C  G++G  CE+
Sbjct: 1  DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38

>pdb|1APO|A Chain A, Three-Dimensional Structure Of The Apo Form Of The N- Terminal Egf-Like Module Of Blood Coagulation Factor X As Determined By Nmr Spectroscopy And Simulated Folding Length = 42

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNV 84
          ++CE  PC N   C+D IG Y+C CA GF+G+NCE + 
Sbjct: 4  DQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEFST 41

>pdb|1F7E|A Chain A, The First Egf-Like Domain From Human Blood Coagulation Fvii, Nmr, 20 Structures Length = 46

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD 86
          ++C S PCQNG +C+D +  Y C C   F+G+NCE + DD
Sbjct: 4  DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43

>pdb|1PFX|L Chain L, Porcine Factor Ixa Length = 146

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 44 IEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNV 84
          ++ ++CE +PC NG  C+  I  Y C C  GF+G+NCEL+ 
Sbjct: 46 VDGDQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELDA 86

>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal Growth Factor-Like Domains, Minimized Average Structure Length = 82

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 12 KREALCHNGTCEDFGNSHRCHCMEGY--TGSYCSIEINECE-SDPCQNGATCQDLIGGYS 68
          K   +C +G C +   S+RC C  GY   G+ C ++ +EC   +PC NG TC+++IGG+ 
Sbjct: 9  KEPDVCKHGQCINTDGSYRCECPFGYILAGNEC-VDTDECSVGNPCGNG-TCKNVIGGFE 66
Query: 69 CQCARGFQ 76
          C C  GF+
Sbjct: 67 CTCEEGFE 74

>pdb|1WHE|A Chain A, Coagulation Factor, Nmr, 20 Structures Length = 86

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNV 84
          ++CE  PC N   C+  IG Y+C CA GF+G+NCE + 
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFST 85

>pdb|1CCF|A Chain A, How An Epidermal Growth Factor (Egf)-Like Domain Binds Calcium-High Resolution Nmr Structure Of The Calcium Form Of The Nh2-Terminal Egf-Like Domain In Coagulation Factor X Length = 42

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNV 84
          ++CE  PC N   C+  IG Y+C CA GF+G+NCE + 
Sbjct: 4  DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFST 41

>pdb|1BF9|A Chain A, N-Terminal Egf-Like Domain From Human Factor Vii, Nmr, 23 Structures Length = 41

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCE 81
          ++C S PCQNG +C+D +  Y C C   F+G+NCE
Sbjct: 4  DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 38

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	145
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	5e-37
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	6e-27
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	2e-25
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	4e-28
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	2e-21
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	2e-17
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	7e-04
2vh0_B	134	Activated factor XA light chain; serine protease,	3e-27
2vh0_B	134	Activated factor XA light chain; serine protease,	5e-24
2vh0_B	134	Activated factor XA light chain; serine protease,	9e-10
2vh0_B	134	Activated factor XA light chain; serine protease,	3e-08
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	7e-25
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	6e-23
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	2e-20
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	4e-12
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	1e-24
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	4e-24
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	2e-23
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	4e-21
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	3e-06
1aut_L	114	Activated protein C; serine proteinase, plasma cal	1e-18
1aut_L	114	Activated protein C; serine proteinase, plasma cal	6e-15
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	4e-16
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	6e-11
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	3e-14
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	2e-08
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	1e-13
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	2e-11
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	4e-10
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	2e-09
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	4e-04
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	5e-13
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	5e-10
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	6e-08
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	2e-07
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	3e-07
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	1e-05
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	1e-12
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	9e-09
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	3e-08
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	7e-04
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	2e-12
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	2e-11
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	5e-12
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	6e-11
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	1e-10
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	1e-04
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	1e-08
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	1e-06
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	2e-08
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	3e-08
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	4e-08
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	5e-07
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	8e-08
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	3e-06
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	2e-07
2bou_A	143	EGF-like module containing mucin-like hormone rece	4e-07
2bou_A	143	EGF-like module containing mucin-like hormone rece	1e-04
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	9e-07
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	2e-06
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	9e-07
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	5e-05
3v65_B	386	Low-density lipoprotein receptor-related protein;	6e-06
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	6e-06
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	2e-05
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	4e-05
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	5e-05
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	1e-04
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	1e-04
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	1e-04
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	1e-04
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	2e-04
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	1e-04
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	1e-04
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	3e-04
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	4e-04
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	4e-04
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	6e-04
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	7e-04

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score =  122 bits (309), Expect = 5e-37
 Identities = 47/95 (49%), Positives = 62/95 (65%)

Query: 18  HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQG 77
           H G C +   S  C C++GYTG  C I++NEC S+PCQN ATC D IG + C C  G++G
Sbjct: 17  HAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEG 76

Query: 78  QNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
            +CE+N D+C  +PC + G C D IN F C CP+G
Sbjct: 77  VHCEVNTDECASSPCLHNGRCLDKINEFQCECPTG 111

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 96.9 bits (242), Expect = 6e-27
 Identities = 24/79 (30%), Positives = 37/79 (46%)

Query: 18  HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQG 77
           ++ TC D     +C CM GY G +C +  +EC S PC +   C D I  + C+C  GF G
Sbjct: 55  NDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTG 114

Query: 78  QNCELNVDDCKPNPCQNGG 96
             C++++            
Sbjct: 115 HLCQVDLHHILDAQKMVWN 133

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 93.0 bits (232), Expect = 2e-25
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 14/107 (13%)

Query: 43  SIEINECE--SDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHD 100
           + +++EC   ++PC++   C + +G + CQC +G+ G  CE++V++C  NPCQN   C D
Sbjct: 2   AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLD 61

Query: 101 LINHFSCSCPSGLK-----------REALCHN-GTCEDFGNSHRCHC 135
            I  F C C  G +             + C + G C D  N  +C C
Sbjct: 62  QIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCEC 108

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score =  100 bits (250), Expect = 4e-28
 Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 21/116 (18%)

Query: 18  HNGTCED--FGNSHRCHCMEGYTGSYCSIEI------------NECESDPCQNGATCQ-- 61
           + G C       S  C C +G+T   CS  +              C  +PC NG TC+  
Sbjct: 10  NGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEIS 69

Query: 62  -----DLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
                D   GY C+C RGF G +C+ N+++C+  PC+NGGIC DL+ ++SC CP  
Sbjct: 70  EAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGE 125

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 83.2 bits (206), Expect = 2e-21
 Identities = 26/72 (36%), Positives = 36/72 (50%)

Query: 19  NGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQ 78
                D    + C C  G+ G +C   INECE +PC+NG  C DL+  YSC+C   F G+
Sbjct: 70  EAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGR 129

Query: 79  NCELNVDDCKPN 90
           NC+        +
Sbjct: 130 NCQYKGGGHHHH 141

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 72.4 bits (178), Expect = 2e-17
 Identities = 36/121 (29%), Positives = 46/121 (38%), Gaps = 33/121 (27%)

Query: 48  ECESDPCQNGATCQDLI--GGYSCQCARGFQGQNCELNVD------------DCKPNPCQ 93
            C+ +PC+NG  C   +  G +SC+C  GF   NC   V+             C PNPC 
Sbjct: 2   ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCH 61

Query: 94  NGGICH-------DLINHFSCSCPSGLK-----------REALCHNG-TCEDFGNSHRCH 134
           NGG C        D    + C CP G                 C NG  C D   ++ C 
Sbjct: 62  NGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCE 121

Query: 135 C 135
           C
Sbjct: 122 C 122

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 85  DDCKPNPCQNGGICHDLI--NHFSCSCPSG 112
           D C PNPC+NGGIC   +    FSC CP G
Sbjct: 1   DICDPNPCENGGICLPGLADGSFSCECPDG 30

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 97.4 bits (243), Expect = 3e-27
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 1/96 (1%)

Query: 18  HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQG 77
                 +          +         + ++CE+ PCQN   C+D +G Y+C C  GF+G
Sbjct: 14  EETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 73

Query: 78  QNCELNVDD-CKPNPCQNGGICHDLINHFSCSCPSG 112
           +NCEL     C  +       CH+  N   CSC  G
Sbjct: 74  KNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARG 109

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 89.3 bits (222), Expect = 5e-24
 Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 1/83 (1%)

Query: 17  CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINE-CESDPCQNGATCQDLIGGYSCQCARGF 75
            + G C+D    + C C+EG+ G  C +   + C  D       C +      C CARG+
Sbjct: 51  QNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGY 110

Query: 76  QGQNCELNVDDCKPNPCQNGGIC 98
              +         P PC    + 
Sbjct: 111 TLADNGKACIPTGPYPCGKQTLE 133

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 52.3 bits (126), Expect = 9e-10
 Identities = 10/44 (22%), Positives = 14/44 (31%)

Query: 18  HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQ 61
            +  C +  NS  C C  GYT +            PC      +
Sbjct: 91  CDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLER 134

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 48.4 bits (116), Expect = 3e-08
 Identities = 13/85 (15%), Positives = 21/85 (24%), Gaps = 26/85 (30%)

Query: 51  SDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCP 110
              C       +          +  +  N   + D C+ +PCQN G              
Sbjct: 9   ERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQG-------------- 54

Query: 111 SGLKREALCHNGTCEDFGNSHRCHC 135
                        C+D    + C C
Sbjct: 55  ------------KCKDGLGEYTCTC 67

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 93.3 bits (232), Expect = 7e-25
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 1/104 (0%)

Query: 17  CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINE-CESDPCQNGATCQDLIGGYSCQCARGF 75
            + G C+D    + C C+EG+ G  C +   + C  D       C +      C CARG+
Sbjct: 51  QNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGY 110

Query: 76  QGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALC 119
              +         P PC    +     +    +  SG   +++ 
Sbjct: 111 TLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSIT 154

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 88.3 bits (219), Expect = 6e-23
 Identities = 28/133 (21%), Positives = 43/133 (32%), Gaps = 13/133 (9%)

Query: 19  NGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQ 78
                +          +         + ++CE+ PCQN   C+D +G Y+C C  GF+G+
Sbjct: 15  ETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK 74

Query: 79  NCELNVDD-CKPNPCQNGGICHDLINHFSCSCPSGLK-----------REALCHNG-TCE 125
           NCEL     C  +       CH+  N   CSC  G                 C       
Sbjct: 75  NCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLER 134

Query: 126 DFGNSHRCHCICW 138
              +  +      
Sbjct: 135 RKRSVAQATSSSG 147

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 82.1 bits (203), Expect = 2e-20
 Identities = 17/100 (17%), Positives = 25/100 (25%), Gaps = 1/100 (1%)

Query: 17  CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGF- 75
             +  C +  NS  C C  GYT +            PC      +          + G  
Sbjct: 90  DCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEA 149

Query: 76  QGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKR 115
                    D    +P +N     D          + L R
Sbjct: 150 PDSITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNLTR 189

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 59.8 bits (145), Expect = 4e-12
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 13/98 (13%)

Query: 51  SDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCP 110
              C       +          +  +  N   + D C+ +PCQN G C D +  ++C+C 
Sbjct: 9   ERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCL 68

Query: 111 SGL-------------KREALCHNGTCEDFGNSHRCHC 135
            G                +    +  C +  NS  C C
Sbjct: 69  EGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSC 106

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 91.3 bits (227), Expect = 1e-24
 Identities = 17/84 (20%), Positives = 29/84 (34%)

Query: 17  CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
            + G C+D  NS+ C C  G+ G  C ++      +                C C  G++
Sbjct: 57  LNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYR 116

Query: 77  GQNCELNVDDCKPNPCQNGGICHD 100
               + +     P PC    + H 
Sbjct: 117 LAPDQKSCKPAVPFPCGRVSVSHS 140

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 90.1 bits (224), Expect = 4e-24
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 18  HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQG 77
                E F      +  +        ++ ++CE +PC NG  C+D I  Y C C  GF+G
Sbjct: 25  FEEAREVF-----ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEG 79

Query: 78  QNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
           +NCEL+      N            +   CSC +G
Sbjct: 80  KNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTG 114

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 87.8 bits (218), Expect = 2e-23
 Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 17  CHNGTCEDFGNSHRCHCME-GYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGF 75
           C    C            E          + ++C S PCQNG +C+D +  Y C C   F
Sbjct: 17  CKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAF 76

Query: 76  QGQNCELNVDDCKPNPCQNGGICHDLINH----FSCSCPSG 112
           +G+NCE + DD      +NGG      +H     SC C  G
Sbjct: 77  EGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEG 117

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 82.0 bits (203), Expect = 4e-21
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 17  CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNG---ATCQDLIG-GYSCQCA 72
            + G+C+D   S+ C C+  + G  C    ++      +NG     C D  G   SC+C 
Sbjct: 56  QNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCH 115

Query: 73  RGFQGQNCELNVDDCKPNPCQNGGIC 98
            G+      ++       PC    I 
Sbjct: 116 EGYSLLADGVSCTPTVEYPCGKIPIL 141

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 5/50 (10%)

Query: 17  CHNGTCEDF-----GNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQ 61
             NG CE +     G    C C EGY+     +        PC      +
Sbjct: 93  NENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPILE 142

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 74.7 bits (184), Expect = 1e-18
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 17  CHNGTCEDFGNSHRCHCMEGYTGSYCSIEIN--ECESDPCQNGATCQDLIGGYSCQCARG 74
           C +GTC D   S  C C  G+ G +C  E++   C  D       C + +G   C CA G
Sbjct: 23  CGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPG 82

Query: 75  FQGQNCELNVDDCKPNPCQNGGICHD 100
           ++  +  L        PC       +
Sbjct: 83  YKLGDDLLQCHPAVKFPCGRPWKRME 108

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 65.5 bits (160), Expect = 6e-15
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 43  SIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVD--DCKPNPCQNGGICHD 100
            + +    +  C    TC D IG +SC C  G++G+ C+  V   +C  +       C +
Sbjct: 11  VLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLE 70

Query: 101 LINHFSCSCPSG 112
            +    CSC  G
Sbjct: 71  EVGWRRCSCAPG 82

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 72.1 bits (177), Expect = 4e-16
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 1/90 (1%)

Query: 47  NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGG-ICHDLINHF 105
           + C S PC +  +CQD I GY+C C+ G++G NCEL  ++C P         C      +
Sbjct: 6   SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESY 65

Query: 106 SCSCPSGLKREALCHNGTCEDFGNSHRCHC 135
           +CSC  G +           D         
Sbjct: 66  TCSCAQGYRLGEDHKQCVPHDQCACGVLTS 95

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 57.8 bits (140), Expect = 6e-11
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGA-TCQDLIGGYSCQCARGF 75
           HNG+C+D    + C C  GY GS C +  NEC  +        C      Y+C CA+G+
Sbjct: 14 LHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGY 73

Query: 76 QGQNCELNVDDCKPNPC 92
          +               C
Sbjct: 74 RLGEDHKQCVPHDQCAC 90

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 61.7 bits (151), Expect = 3e-14
 Identities = 20/39 (51%), Positives = 29/39 (74%)

Query: 44 IEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCEL 82
          ++ ++CES+PC NG +C+D I  Y C C  GF+G+NCEL
Sbjct: 1  VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 46.3 bits (111), Expect = 2e-08
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 82  LNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
           ++ D C+ NPC NGG C D IN + C CP G
Sbjct: 1   VDGDQCESNPCLNGGSCKDDINSYECWCPFG 31

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 63.5 bits (155), Expect = 1e-13
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 12/98 (12%)

Query: 17  CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
             +G+C+  G+   C C  G+ G YC    ++C   P      C +    + C C   + 
Sbjct: 74  PKHGSCKLPGD---CRCQYGWQGLYC----DKCIPHPGCVHGICNE---PWQCLCETNWG 123

Query: 77  GQNCELNVDDCK-PNPCQNGGICHDL-INHFSCSCPSG 112
           GQ C+ +++ C    PC NGG C +   + + CSCP G
Sbjct: 124 GQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEG 161

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 14/96 (14%)

Query: 17  CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
                  D   +    CMEG+ G  C+  I  C         +C+       C+C  G+Q
Sbjct: 40  FFGHYACDQNGN--KTCMEGWMGPECNRAI--CRQGCSPKHGSCKL---PGDCRCQYGWQ 92

Query: 77  GQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
           G  C    D C P+P    GIC++    + C C + 
Sbjct: 93  GLYC----DKCIPHPGCVHGICNE---PWQCLCETN 121

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 53.9 bits (130), Expect = 4e-10
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 17  CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECES-DPCQNGATCQDL-IGGYSCQCARG 74
           C +G C +     +C C   + G  C  ++N C +  PC NG TC +     Y C C  G
Sbjct: 105 CVHGICNE---PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEG 161

Query: 75  FQGQNCEL 82
           + G NCE+
Sbjct: 162 YSGPNCEI 169

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 20/96 (20%), Positives = 27/96 (28%), Gaps = 13/96 (13%)

Query: 17  CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
            H+G+ E         C + Y G  C+     C       G    D     +  C  G+ 
Sbjct: 8   HHHGSIE---GRSAVTCDDYYYGFGCN---KFCRPRDDFFGHYACD--QNGNKTCMEGWM 59

Query: 77  GQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
           G  C      C+       G C        C C  G
Sbjct: 60  GPECN--RAICRQGCSPKHGSCKL---PGDCRCQYG 90

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 8/64 (12%)

Query: 49  CESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCS 108
             S    +  +     G  +  C   + G  C      C+P     G    D     + +
Sbjct: 2   RGSHHHHHHGSI---EGRSAVTCDDYYYGFGCN---KFCRPRDDFFGHYACDQNG--NKT 53

Query: 109 CPSG 112
           C  G
Sbjct: 54  CMEG 57

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 64.1 bits (155), Expect = 5e-13
 Identities = 20/115 (17%), Positives = 34/115 (29%), Gaps = 7/115 (6%)

Query: 31  CHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPN 90
               E + G    + +    + P  +G                   G +     ++ +  
Sbjct: 144 VREREPFKGWIRDVRVQSSLALPVDSGEVK-------LDDEPPNSGGGSPCEAGEEGEGG 196

Query: 91  PCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSHRCHCICWDDLRNSI 145
            C NGG+C  + +   C C     R   C  G  E           C+D  +N I
Sbjct: 197 VCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPI 251

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 55.6 bits (133), Expect = 5e-10
 Identities = 23/113 (20%), Positives = 36/113 (31%), Gaps = 9/113 (7%)

Query: 24  DFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCAR-GFQGQNCEL 82
           D G            G        E E   C NG  C  +     C C+R GF+G++C  
Sbjct: 168 DSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQ 227

Query: 83  NVDDCKPNPCQNGGICHDLINHFSCSCPSGLKRE--------ALCHNGTCEDF 127
             ++       +   C+DL  +   S    +            + H G   D+
Sbjct: 228 GKEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADY 280

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 49.5 bits (117), Expect = 6e-08
 Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 16  LCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQC-ARG 74
           L  +G  +D           G   S        C S+PC+N   C+D    Y C C   G
Sbjct: 589 LFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTG 648

Query: 75  FQGQNCELNVDDCKPNPCQNGGICHDLINH 104
           + G++CE        +      I   ++ H
Sbjct: 649 YLGRSCEREATVLSYDGSMFMKIQLPVVMH 678

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 12/110 (10%)

Query: 28   SHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDC 87
                H  EG+ G   S+++N    D   +   C   I             + CE     C
Sbjct: 973  PKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIE------------RGCEGPSTTC 1020

Query: 88   KPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSHRCHCIC 137
            + + C N G+C    + FSC C        LC++       +        
Sbjct: 1021 QEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITY 1070

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 47.5 bits (112), Expect = 3e-07
 Identities = 16/85 (18%), Positives = 26/85 (30%)

Query: 60  CQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALC 119
            +D+      Q   G +          C  NPC+N G+C D  N + C C         C
Sbjct: 595 SKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSC 654

Query: 120 HNGTCEDFGNSHRCHCICWDDLRNS 144
                    +      I    + ++
Sbjct: 655 EREATVLSYDGSMFMKIQLPVVMHT 679

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 14/76 (18%), Positives = 21/76 (27%)

Query: 36   GYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNG 95
            G     C      C+ D C N   C     G+SC C+          +           G
Sbjct: 1007 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGG 1066

Query: 96   GICHDLINHFSCSCPS 111
             I +    +   S  +
Sbjct: 1067 QITYKWPPNDRPSTRA 1082

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 60.8 bits (148), Expect = 1e-12
 Identities = 23/137 (16%), Positives = 40/137 (29%), Gaps = 18/137 (13%)

Query: 17  CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
           C +G C +   S+ C C   +  +   +   +  S  C      +   G  +C    G  
Sbjct: 12  CISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVG 71

Query: 77  --GQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSG----------------LKREAL 118
               +C  ++      PC+     +       C    G                 +   L
Sbjct: 72  VSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGL 131

Query: 119 CHNGTCEDFGNSHRCHC 135
           C  G C +   S +C C
Sbjct: 132 CQGGKCINTFGSFQCRC 148

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 50.4 bits (121), Expect = 9e-09
 Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 6/102 (5%)

Query: 17  CHNGTCEDFGNSHRCHCMEGYTGS--YCSIEINECESDPCQNGATCQDLIGGYSCQCARG 74
             +           C    G   S   C   + +    PC+             C    G
Sbjct: 50  YLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEG 109

Query: 75  FQGQNCELN---VDDCKPNPCQ-NGGICHDLINHFSCSCPSG 112
           F+     +    +D+C+  P    GG C +    F C CP+G
Sbjct: 110 FRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTG 151

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 48.9 bits (117), Expect = 3e-08
 Identities = 16/94 (17%), Positives = 23/94 (24%), Gaps = 3/94 (3%)

Query: 46  INECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHF 105
           +NEC          C +  G Y C C   F+     +   D +   C             
Sbjct: 3   VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDT 62

Query: 106 SCSCPSGLKREAL---CHNGTCEDFGNSHRCHCI 136
           +CS   G+        C  G              
Sbjct: 63  ACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVN 96

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 37.0 bits (86), Expect = 7e-04
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 4/67 (5%)

Query: 17  CHNGTCEDFGNSHRCHCMEGYTGSYCSIE---INECESDPCQ-NGATCQDLIGGYSCQCA 72
                         C   EG+  +  ++    I+EC+  P    G  C +  G + C+C 
Sbjct: 90  EMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCP 149

Query: 73  RGFQGQN 79
            G+    
Sbjct: 150 TGYYLNE 156

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91

 Score = 58.3 bits (141), Expect = 2e-12
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 26 GNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLI--GGYSCQCARGFQGQNCELN 83
               C C  G      S+ +  C    C NG TCQ  +    + CQC  GF G++CE++
Sbjct: 29 NRVEYCWCNSGRAQC-HSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEID 87

Query: 84 V 84
           
Sbjct: 88 T 88

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91

 Score = 56.0 bits (135), Expect = 2e-11
 Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 11/87 (12%)

Query: 28  SHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDC 87
           S++  C +  T      + ++    P               C C  G       + V  C
Sbjct: 1   SYQVICRDEKTQMIY--QQHQSWLRPVLRSN------RVEYCWCNSGRAQ-CHSVPVKSC 51

Query: 88  KPNPCQNGGICHDLI--NHFSCSCPSG 112
               C NGG C   +  + F C CP G
Sbjct: 52  SEPRCFNGGTCQQALYFSDFVCQCPEG 78

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 60.6 bits (147), Expect = 5e-12
 Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 15/96 (15%)

Query: 17  CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
            + GTC       +C C  G  G  C  EI++C   PC+NG  C   IG   C+C++G+Q
Sbjct: 220 FNGGTCF---YPGKCICPPGLEGEQC--EISKC-PQPCRNGGKC---IGKSKCKCSKGYQ 270

Query: 77  GQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
           G  C   V +     C   G CH+      C C  G
Sbjct: 271 GDLCSKPVCEP---GCGAHGTCHE---PNKCQCQEG 300

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 57.6 bits (139), Expect = 6e-11
 Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 9/80 (11%)

Query: 17  CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
            + G C        C C +GY G  CS  + E     C    TC +      CQC  G+ 
Sbjct: 252 RNGGKCIGKSK---CKCSKGYQGDLCSKPVCEP---GCGAHGTCHE---PNKCQCQEGWH 302

Query: 77  GQNCELNVDDCKPNPCQNGG 96
           G++C    +        +  
Sbjct: 303 GRHCNKRYEASLIGTKHHHH 322

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 57.2 bits (138), Expect = 1e-10
 Identities = 31/96 (32%), Positives = 37/96 (38%), Gaps = 15/96 (15%)

Query: 17  CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
            + G C        C C  G+ G  C        S  C NG TC        C C  G +
Sbjct: 188 MNGGLCV---TPGFCICPPGFYGVNCDK---ANCSTTCFNGGTC---FYPGKCICPPGLE 238

Query: 77  GQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
           G+ CE  +  C P PC+NGG C   I    C C  G
Sbjct: 239 GEQCE--ISKC-PQPCRNGGKC---IGKSKCKCSKG 268

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 13/82 (15%), Positives = 20/82 (24%), Gaps = 7/82 (8%)

Query: 31  CHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPN 90
                   G  C  + +   +    +                     + C+       P 
Sbjct: 98  HKASVVQVGFPCLGKQDGVAAFEV-DVIVMNSEGNTILKTPQNAIFFKTCQQAEC---PG 153

Query: 91  PCQNGGICHDLINHFSCSCPSG 112
            C+NGG C        C CP G
Sbjct: 154 GCRNGGFC---NERRICECPDG 172

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 51.4 bits (122), Expect = 1e-08
 Identities = 17/93 (18%), Positives = 25/93 (26%), Gaps = 12/93 (12%)

Query: 17  CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
              G+           C+   +       + + E   CQNG TC        C C   + 
Sbjct: 338 WSPGSYLPIPKGAANACIPSISSIGT--NVCDNELLHCQNGGTC---HNNVRCLCPAAYT 392

Query: 77  GQNCELNVDDCKPNPCQNGGICHDLINHFSCSC 109
           G  CE          C+  G C       +   
Sbjct: 393 GILCE-------KLRCEEAGSCGSDSGQGAPPH 418

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 45.2 bits (106), Expect = 1e-06
 Identities = 15/106 (14%), Positives = 26/106 (24%), Gaps = 7/106 (6%)

Query: 31  CHCMEGYTGSYCSIEINECESDPCQNGA-TCQDLIGGYSCQCARGFQGQNCELNVDDCKP 89
              +      Y   +I       C   A  C       +C+C     G +C     + + 
Sbjct: 276 VDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQG 335

Query: 90  NPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSHRCHC 135
            P   G     +    + +C        +   GT         C  
Sbjct: 336 RPWSPGS-YLPIPKGAANACIPS-----ISSIGTNVCDNELLHCQN 375

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 5/92 (5%)

Query: 46  INECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHF 105
           I+ECES PC NG  C++  G + C+C+        +    +     C    I        
Sbjct: 4   IDECESSPCING-VCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDG----RC 58

Query: 106 SCSCPSGLKREALCHNGTCEDFGNSHRCHCIC 137
             +      +   C +           C    
Sbjct: 59  EININGATLKSQCCSSLGAAWGSPCTLCQVDP 90

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 48.5 bits (116), Expect = 3e-08
 Identities = 22/134 (16%), Positives = 30/134 (22%), Gaps = 27/134 (20%)

Query: 17  CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ 76
           C NG C++   S  C C    T         E     C                      
Sbjct: 12  CINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGR----CEININGATL 67

Query: 77  GQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSG---------------LKREALCHN 121
              C  ++     +PC                C  G                    +C N
Sbjct: 68  KSQCCSSLGAAWGSPCTLCQ--------VDPICGKGYSRIKGTQCEDIDECEVFPGVCKN 119

Query: 122 GTCEDFGNSHRCHC 135
           G C +   S +C C
Sbjct: 120 GLCVNTRGSFKCQC 133

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 46.8 bits (112), Expect = 4e-08
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 46  INECESDPCQNGATCQDLIGGYSCQCARGFQGQNCE-LNVDDCKPNPCQNGGICHDLINH 104
           ++EC+         C +  G Y C+C  G+     E ++ D+C        G C ++I  
Sbjct: 5   MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVIGG 64

Query: 105 FSCSCPSGLKREALCHNGTCE 125
           F C+C  G +        TCE
Sbjct: 65  FECTCEEGFE---PGPMMTCE 82

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 44.1 bits (105), Expect = 5e-07
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCS-IEINECESDPCQNGATCQDLIGGYSCQCARGF 75
          C +G C +   S+RC C  GY  +    ++ +EC         TC+++IGG+ C C  GF
Sbjct: 14 CKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGF 73

Query: 76 QG 77
          + 
Sbjct: 74 EP 75

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 48.8 bits (116), Expect = 8e-08
 Identities = 16/79 (20%), Positives = 21/79 (26%), Gaps = 1/79 (1%)

Query: 36  GYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCA-RGFQGQNCELNVDDCKPNPCQN 94
           G     C      C+ D C N   C     G+SC C+   F G  C         +    
Sbjct: 175 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGG 234

Query: 95  GGICHDLINHFSCSCPSGL 113
                   N    +    L
Sbjct: 235 QITYKWPPNDRPSTRADRL 253

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 44.6 bits (105), Expect = 3e-06
 Identities = 13/67 (19%), Positives = 22/67 (32%)

Query: 78  QNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNSHRCHCIC 137
           + CE     C+ + C N G+C    + FSC C        LC++       +        
Sbjct: 179 RGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITY 238

Query: 138 WDDLRNS 144
                + 
Sbjct: 239 KWPPNDR 245

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 19/128 (14%), Positives = 29/128 (22%), Gaps = 14/128 (10%)

Query: 27  NSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD 86
            S R  C+   + S   +     +     +G + Q         C   F      L  + 
Sbjct: 249 ESQRNLCLLKTSESG--LPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEEL 306

Query: 87  CKPN---------PCQNGGICHDLI---NHFSCSCPSGLKREALCHNGTCEDFGNSHRCH 134
                         C N   C          SC+   G     L  NG+     +     
Sbjct: 307 DIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGI 366

Query: 135 CICWDDLR 142
                 L 
Sbjct: 367 SGYTLRLC 374

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 45.6 bits (108), Expect = 4e-07
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 24/124 (19%)

Query: 27  NSHRCHCMEGYTGSYCSIE--------INECESD---PCQNGATCQDLIGGYSCQCARGF 75
           N+  C C  G++     I         INEC +     C   + C +  G Y C C+ G+
Sbjct: 17  NATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGY 76

Query: 76  QGQNCELN-----------VDDCK--PNPCQNGGICHDLINHFSCSCPSGLKREALCHNG 122
           +  +               VD+C    + C +  +C + +  +SC C  G K      N 
Sbjct: 77  EPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNN 136

Query: 123 TCED 126
             + 
Sbjct: 137 QKDT 140

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 13/82 (15%)

Query: 18  HNGTCEDFGNSHRCHCMEGYTGSYCS-----------IEINECES--DPCQNGATCQDLI 64
               C +   S+ C C  GY     +            +++EC S    C +   C + +
Sbjct: 57  KFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTV 116

Query: 65  GGYSCQCARGFQGQNCELNVDD 86
           G YSC+C  G++ ++   N   
Sbjct: 117 GSYSCRCRPGWKPRHGIPNNQK 138

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 45.9 bits (108), Expect = 9e-07
 Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 5/103 (4%)

Query: 9   PGLKREALCHNGTCEDFGNSHRCHCMEGYTGSYCSIE-INECESDPCQNGATCQDLIGGY 67
           P  K    C+NG   D      C C  G+ G  C  E I              +   G +
Sbjct: 287 PDCKLRCSCNNGEMCD--RFQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKF 344

Query: 68  SCQC-ARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSC 109
           +  C A G+     E  +   KP+         +  +HFS + 
Sbjct: 345 NPICKASGWPLPTNE-EMTLVKPDGTVLHPKDFNHTDHFSVAI 386

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 44.7 bits (105), Expect = 2e-06
 Identities = 24/147 (16%), Positives = 37/147 (25%), Gaps = 28/147 (19%)

Query: 17  CHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECE-----SDPCQNGATCQD----LIGGY 67
            +NG C +  ++  C C  G+ G  C              + C     C+     L   Y
Sbjct: 206 MNNGVCHE--DTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPY 263

Query: 68  SCQCARGFQGQNCELNVDDC-------KPNPCQNGGICHDLIN----------HFSCSCP 110
            C CA G++G  C                  C NG +C                      
Sbjct: 264 GCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGWQGLQCEREGI 323

Query: 111 SGLKREALCHNGTCEDFGNSHRCHCIC 137
             +  + +      E         C  
Sbjct: 324 PRMTPKIVDLPDHIEVNSGKFNPICKA 350

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 43.4 bits (103), Expect = 9e-07
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCS----IEINECESDPCQ-NGATCQDLIGGYSCQC 71
          C  G C +      C C EGY   +      ++I+EC+ DP    G  C +  G Y C+C
Sbjct: 13 CGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCEC 72

Query: 72 ARGFQ 76
            G Q
Sbjct: 73 PPGHQ 77

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 38.4 bits (90), Expect = 5e-05
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 6/73 (8%)

Query: 46  INECESDPCQNG-ATCQDLIGGYSCQCARGFQGQNCELN----VDDCKPNPCQ-NGGICH 99
           I+EC   P   G   C +  G + C+C  G++     +     +D+C+ +P    GG+CH
Sbjct: 3   IDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCH 62

Query: 100 DLINHFSCSCPSG 112
           +    + C CP G
Sbjct: 63  NTEGSYRCECPPG 75

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 43.6 bits (102), Expect = 6e-06
 Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 6/96 (6%)

Query: 46  INECESDPCQNGATCQDLIGGYSCQCARGFQ----GQNCELNVDDCKPNPCQNGGICHDL 101
              C  +       CQ + G   C C  G++    G+ C+   +  +   C     C + 
Sbjct: 3   EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQ--GCTNS 60

Query: 102 INHFSCSCPSGLKREALCHNGTCEDFGNSHRCHCIC 137
              F C C +G +      +                
Sbjct: 61  EGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRI 96

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A Length = 463

 Score = 43.4 bits (102), Expect = 6e-06
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 9/68 (13%)

Query: 14  EALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCAR 73
             LC NG C   G   +C C  G+ G +C     +CE   C++G  C   +    C C +
Sbjct: 396 SRLCRNGYCTPTG---KCCCSPGWEGDFC--RTAKCEP-ACRHGGVC---VRPNKCLCKK 446

Query: 74  GFQGQNCE 81
           G+ G  CE
Sbjct: 447 GYLGPQCE 454

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 19  NGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQ 78
           +       + +     E        +  NEC  +       C DL  GY C C  GFQ  
Sbjct: 3   HHHHHHPMSDYDIPTTENLYFQGA-MGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLV 61

Query: 79  N---CELNVDDC-KPNPCQNGGICHDLINHFSCSCPSG 112
               CE ++D+C  P+ C    +C +L   + C C  G
Sbjct: 62  AQRRCE-DIDECQDPDTCS--QLCVNLEGGYKCQCEEG 96

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 4/71 (5%)

Query: 56  NGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKR 115
                   +  Y          Q      ++C  N      +C+DL   + C CP G + 
Sbjct: 2   KHHHHHHPMSDYDIPTTENLYFQGAM-GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQ- 59

Query: 116 EALCHNGTCED 126
             L     CED
Sbjct: 60  --LVAQRRCED 68

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 41.0 bits (95), Expect = 5e-05
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 47  NECESDPCQNGATCQDLIGGYSCQCARGFQ--GQNCELNVDDCKPNPCQNGGICHDLINH 104
           NEC  +       C DL  GY C C  GFQ   Q    ++D+C+ +P     +C +L   
Sbjct: 1   NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGG 59

Query: 105 FSCSCPSGLKREALCHNGTCEDFGNSHRCHCICWDDLRN 143
           + C C  G + +   H   C+  G+          ++R 
Sbjct: 60  YKCQCEEGFQLDP--HTKACKAVGSIAYLFFTNRHEVRK 96

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 25/102 (24%), Positives = 35/102 (34%), Gaps = 11/102 (10%)

Query: 45  EINECESDPCQNGATCQDL-IGGYSCQ-CARGFQ--GQNCELNVDDCKPN-----PCQNG 95
           + + C S+PC  GA C     G +SC  C  GF   G +CE ++D+C             
Sbjct: 2   DPDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCE-DLDECALVPDICFSTSKV 60

Query: 96  GICHDLINHFSC-SCPSGLKREALCHNGTCEDFGNSHRCHCI 136
             C +    F C  CP   +       G          C   
Sbjct: 61  PRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPE 102

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 19/96 (19%), Positives = 24/96 (25%), Gaps = 15/96 (15%)

Query: 18  HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQG 77
             G C        C C  GY    C  +       PC    +C         +  +G  G
Sbjct: 570 GRGRCRCN----VCECHSGYQLPLC--QECPGCPSPCGKYISC-----AECLKFEKGPFG 618

Query: 78  QNCELNV-DDCKPNPCQNGGICHDLINHFSCSCPSG 112
           +NC          N    G  C       S  C   
Sbjct: 619 KNCSAACPGLQLSNNPVKGRTC---KERDSEGCWVA 651

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A Length = 162

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 15/43 (34%), Positives = 18/43 (41%)

Query: 45  EINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDC 87
               C+   C     C + IG Y+C C  GF G  CE   DD 
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDD 160

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 10/87 (11%)

Query: 46  INECESDP--CQNGATCQDLIGGYSCQCARGFQ----GQNCELNVDDCKPNPCQNGGICH 99
           ++EC   P  C     C+++ G + C+C  G++     ++CE ++D+C  N C    +C 
Sbjct: 3   VDECSLKPSICGTA-VCKNIPGDFECECPEGYRYNLKSKSCE-DIDECSENMCA--QLCV 58

Query: 100 DLINHFSCSCPSGLKREALCHNGTCED 126
           +    ++C C      +      +CE 
Sbjct: 59  NYPGGYTCYCDGKKGFKLAQDQKSCEV 85

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 17 CHNGTCEDFGNSHRCHCMEGYT----GSYCSIEINECESDPCQNGATCQDLIGGYSCQC 71
          C    C++      C C EGY        C  +I+EC  + C     C +  GGY+C C
Sbjct: 13 CGTAVCKNIPGDFECECPEGYRYNLKSKSC-EDIDECSENMCA--QLCVNYPGGYTCYC 68

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 10/108 (9%)

Query: 15  ALCHNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQ----DLIGGYSCQ 70
             C         N + C C+EGYT    +  ++ C+   C     C       I    C 
Sbjct: 60  GQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCS 119

Query: 71  CARGFQGQNCE------LNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
           CA G      +           C+     +  +C ++   + C C  G
Sbjct: 120 CAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEG 167

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 10/111 (9%), Positives = 25/111 (22%), Gaps = 14/111 (12%)

Query: 20  GTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQN 79
            + +    S                   +   + C+N    ++ +  Y       F   +
Sbjct: 40  ASAQAKALSKHQDFNSA----------VQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCD 89

Query: 80  CELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCHNGTCEDFGNS 130
                  C+    +  G   D  +  +    +         N      G +
Sbjct: 90  LN----YCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEA 136

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 17/67 (25%), Positives = 21/67 (31%), Gaps = 2/67 (2%)

Query: 46  INECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHF 105
           ++ C    C+      D    Y C CA GF     E +      N       C       
Sbjct: 4   VDPCFRANCEYQCQPLD-QTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNT-QA 61

Query: 106 SCSCPSG 112
           SC CP G
Sbjct: 62  SCECPEG 68

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ... Length = 553

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 46 INECESDPCQNGATCQDL-IGGYSCQCAR-GFQGQNCE 81
          +N C   PCQ+   C    +  Y C C R G+ G NC 
Sbjct: 2  VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCT 39

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A Length = 285

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 5/61 (8%)

Query: 45  EINECES--DPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLI 102
               C +    C   A C+D   G+ C+C   + G          + +P +  G     I
Sbjct: 4   AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNG---RQCVAEGSPQRVNGKVKGRI 60

Query: 103 N 103
            
Sbjct: 61  F 61

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* 3krk_A* ... Length = 587

 Score = 37.8 bits (87), Expect = 6e-04
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 47 NECESDPCQNGATCQDL-IGGYSCQCAR-GFQGQNCE 81
          N C S+PCQN   C       Y C C R GF G+NC 
Sbjct: 2  NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 38

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A Length = 157

 Score = 36.7 bits (85), Expect = 7e-04
 Identities = 12/37 (32%), Positives = 16/37 (43%)

Query: 45  EINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCE 81
               C +  C     C + I  Y+C+C  GF G  CE
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.82
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.81
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.71
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.68
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.58
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.53
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.5
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.49
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	99.41
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.4
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.39
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	99.32
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	99.23
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	99.23
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	99.2
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	99.17
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	99.16
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	99.13
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	99.06
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	99.02
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	99.02
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	99.01
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	99.01
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	99.0
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	99.0
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	98.99
1aut_L	114	Activated protein C; serine proteinase, plasma cal	98.96
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	98.96
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	98.92
1aut_L	114	Activated protein C; serine proteinase, plasma cal	98.91
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	98.9
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	98.9
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	98.89
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	98.89
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	98.84
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	98.81
2vh0_B	134	Activated factor XA light chain; serine protease,	98.8
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	98.79
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	98.79
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	98.76
2vh0_B	134	Activated factor XA light chain; serine protease,	98.74
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	98.73
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	98.72
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	98.69
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	98.59
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	98.59
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	98.53
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.49
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	98.48
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.39
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.25
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.22
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.2
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	98.19
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.17
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.15
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.15
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.09
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	97.97
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	97.9
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	97.8
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	97.77
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	97.76
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	97.76
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	97.72
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	97.71
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	97.63
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	97.6
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	97.54
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.53
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	97.5
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	97.4
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.35
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	97.24
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	97.2
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	97.11
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.08
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	96.82
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	96.8
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	96.75
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	96.54
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	96.48
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	96.33
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	96.3
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	96.29
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	96.29
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	96.29
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	96.25
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	96.19
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	96.11
2wph_E	59	Coagulation factor IXA light chain; serine proteas	96.11
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	96.03
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	96.0
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	95.97
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	95.82
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	95.76
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	95.75
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	95.75
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	95.74
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	95.68
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	95.6
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	95.59
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	95.58
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	95.43
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	95.32
1ob1_C	99	Major merozoite surface protein; immune system, im	95.29
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	95.14
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	95.12
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	94.98
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	94.72
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	94.71
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	94.29
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	94.16
1ob1_C	99	Major merozoite surface protein; immune system, im	93.89
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	93.58
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	93.02
2wph_E	59	Coagulation factor IXA light chain; serine proteas	92.64
1szb_A	170	Mannose binding lectin-associated serine protease-	91.92
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	91.23
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	90.78
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	90.43
1szb_A	170	Mannose binding lectin-associated serine protease-	89.67
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	89.48
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	88.78
1nzi_A	159	Complement C1S component; calcium, innate immunity	88.66
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	87.29
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	86.12
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	85.42
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	85.19
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	83.22
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	83.11

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.82  E-value=8.4e-19  Score=105.51  Aligned_cols=116  Identities=42%  Similarity=1.002  Sum_probs=102.3

Q ss_pred             eeecCCCCCCCCCCC-CCEeeeCCCceeeecCCCcccCCCCccCCCCCCCCCCCCCeeeeCCCceEEeCCCCcccCCccc
Q psy6349           4 LIVSSPGLKREALCH-NGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCEL   82 (145)
Q Consensus         4 ~~~~~~~~~~~~~c~-~~~c~~~~~~~~C~c~~g~~~~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~~   82 (145)
                      +.++++|....++|. ++.|++..++|.|.|.+||.|..|+.++++|...+|..++.|++..++|.|.|.++|.|..|..
T Consensus         2 c~dideC~~~~~~C~~~g~C~~~~g~~~C~C~~Gy~G~~C~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~   81 (135)
T 2vj3_A            2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEV   81 (135)
T ss_dssp             -CCCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTTSCEECCTTTTCCCCSSCEEEECSSCEEEECCTTEESSSSCE
T ss_pred             CcccccccCCCCCCCCCCEeECCCCCEEEECCCCCcCCcccccCccCCCCCCCCCCEEeCCCCCceeeCCCCCcCCccee
Confidence            346778877788997 4899999999999999999999997678899989999999999999999999999999999976


Q ss_pred             cCCCCcCCCCCCCCEEeeCCCCeEeeCCCCCccCCCCC
Q psy6349          83 NVDDCKPNPCQNGGICHDLINHFSCSCPSGLKREALCH  120 (145)
Q Consensus        83 ~~~~c~~~~~~~~~~c~~~~~~~~C~c~~g~~~~~~C~  120 (145)
                      ++++|...+|..++.|++..+.|.|.|++||.+. .|.
T Consensus        82 ~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~G~-~C~  118 (135)
T 2vj3_A           82 NTDECASSPCLHNGRCLDKINEFQCECPTGFTGH-LCQ  118 (135)
T ss_dssp             ECCTTTTCCSTTTCEEEECSSCEEEECCTTEESS-SSC
T ss_pred             cCCcccCCCcCCCCEeECCCCCeEEECCCCCcCC-ccC
Confidence            7888988889999999999999999999999985 453

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.81  E-value=1.5e-20  Score=118.91  Aligned_cols=132  Identities=26%  Similarity=0.595  Sum_probs=109.6

Q ss_pred             CCCCCCCCCCEeeeCCCceeeecCCCcccC---CCCccCCCCC----CCCCCCCCeeeeCC-----CceEEeCCCCcccC
Q psy6349          11 LKREALCHNGTCEDFGNSHRCHCMEGYTGS---YCSIEINECE----SDPCQNGATCQDLI-----GGYSCQCARGFQGQ   78 (145)
Q Consensus        11 ~~~~~~c~~~~c~~~~~~~~C~c~~g~~~~---~c~~~~~~c~----~~~c~~~~~c~~~~-----~~~~c~c~~g~~g~   78 (145)
                      ....++|.|+.|++..++|+|.|.+||.+.   .|+ ++++|.    ..+|..++.|++..     ++|.|.|.+||.+.
T Consensus         7 ~~~~~pC~ng~C~~~~g~~~C~C~~G~~g~~~~~C~-~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~   85 (186)
T 1z1y_A            7 VTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCE-EXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLX   85 (186)
T ss_dssp             CCTTCCCBTEEEEECSSCEEEEECTTEEEEETTEEE-ECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEE
T ss_pred             cCCCCCCCCCEeECCCCCeEeECCCCCccCCCCccC-CCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccC
Confidence            345678888899999999999999999876   785 778897    67788888999988     89999999999976


Q ss_pred             CccccCCCCcCCCCCCCCEEe----eCCCCeEeeCCCCCcc-----C-----------CCC-C-CCeeeeCCCceeEecC
Q psy6349          79 NCELNVDDCKPNPCQNGGICH----DLINHFSCSCPSGLKR-----E-----------ALC-H-NGTCEDFGNSHRCHCI  136 (145)
Q Consensus        79 ~c~~~~~~c~~~~~~~~~~c~----~~~~~~~C~c~~g~~~-----~-----------~~C-~-~~~c~~~~g~~~c~c~  136 (145)
                      .+.-.+++|...+|..++.|+    +..++|.|.|++||.+     .           ..| . ++.|.+..++|+|.|+
T Consensus        86 ~~~C~~d~C~~~~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~~~~~C~~~C~~~~~~C~n~~g~y~C~C~  165 (186)
T 1z1y_A           86 EDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCM  165 (186)
T ss_dssp             TTEEEEGGGTTCCCCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEEECCCCCCCCCTTTEEEEEETTEEEEEEC
T ss_pred             CCCCCCCcCcCCCCCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceEcCCCcccccccccCcceecCCCCeeeECC
Confidence            443236788777888889998    6777899999999987     1           246 4 6799999999999999


Q ss_pred             CCCCcCC
Q psy6349         137 CWDDLRN  143 (145)
Q Consensus       137 ~~~~~~~  143 (145)
                      +||.+..
T Consensus       166 ~G~~g~~  172 (186)
T 1z1y_A          166 EGFTFDX  172 (186)
T ss_dssp             TTCEEET
T ss_pred             CCCccCc
Confidence            9998765

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.71  E-value=1.7e-16  Score=96.35  Aligned_cols=104  Identities=40%  Similarity=1.043  Sum_probs=86.2

Q ss_pred             CCCCCC-CCEeeeCC--CceeeecCCCcccCCCCc------------cCCCCCCCCCCCCCeee-------eCCCceEEe
Q psy6349          13 REALCH-NGTCEDFG--NSHRCHCMEGYTGSYCSI------------EINECESDPCQNGATCQ-------DLIGGYSCQ   70 (145)
Q Consensus        13 ~~~~c~-~~~c~~~~--~~~~C~c~~g~~~~~c~~------------~~~~c~~~~c~~~~~c~-------~~~~~~~c~   70 (145)
                      ...+|. ++.|++..  +.|.|.|.+||+|..|+.            .+++|...+|..++.|+       +..+.|.|.
T Consensus         4 ~~~pC~~~g~C~~~~~~g~~~C~C~~G~~G~~C~~~~~~~~~~~~c~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~C~   83 (143)
T 4d90_A            4 DPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCK   83 (143)
T ss_dssp             CSCCCGGGCEEEC-----CCEEECCTTCCTTTTCSCCCCTTTTTSCCCCCTTSSCCCCTTCEEEECCCEETTEECCEEEE
T ss_pred             CCCcCCCCCEeeCCCCCCCEEeECCCCCCCCCCccCccccccccccccCCcCCCCCCCCCCEecCCCccccCCCCCeEeE
Confidence            456786 48999765  579999999999998863            34567778898889998       455789999


Q ss_pred             CCCCcccCCccccCCCCcCCCCCCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          71 CARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        71 c~~g~~g~~c~~~~~~c~~~~~~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      |.++|.|..|..++++|...+|..++.|++..++|.|.|++||.+.
T Consensus        84 C~~G~~G~~C~~~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~  129 (143)
T 4d90_A           84 CPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGR  129 (143)
T ss_dssp             CCTTEESTTSCEECCTTTTCCSCTTCEEEEETTEEEEECCTTCBST
T ss_pred             CcCCCcCCCcccCCCcCCCCCCCCCCEeECCCCCeEeECCCCCccC
Confidence            9999999999767889988889999999999999999999999986

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.68  E-value=7.5e-16  Score=92.57  Aligned_cols=98  Identities=36%  Similarity=0.932  Sum_probs=85.9

Q ss_pred             cCCCCC--CCCCCCCCeeeeCCCceEEeCCCCcccCCccccCCCCcCCCCCCCCEEeeCCCCeEeeCCCCCccC------
Q psy6349          45 EINECE--SDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKRE------  116 (145)
Q Consensus        45 ~~~~c~--~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~~~~~~c~~~~~~~~~~c~~~~~~~~C~c~~g~~~~------  116 (145)
                      ++++|.  ..+|..++.|++..++|.|.|.++|.|..|..++++|...+|..++.|++..++|.|.|++||.+.      
T Consensus         4 dideC~~~~~~C~~~g~C~~~~g~~~C~C~~Gy~G~~C~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~   83 (135)
T 2vj3_A            4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNT   83 (135)
T ss_dssp             CCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTTSCEECCTTTTCCCCSSCEEEECSSCEEEECCTTEESSSSCEEC
T ss_pred             ccccccCCCCCCCCCCEeECCCCCEEEECCCCCcCCcccccCccCCCCCCCCCCEEeCCCCCceeeCCCCCcCCcceecC
Confidence            678887  578988999999999999999999999999767888988889989999999999999999999864      


Q ss_pred             -----CCCC-CCeeeeCCCceeEecCCCCCcC
Q psy6349         117 -----ALCH-NGTCEDFGNSHRCHCICWDDLR  142 (145)
Q Consensus       117 -----~~C~-~~~c~~~~g~~~c~c~~~~~~~  142 (145)
                           .+|. ++.|.+..++|+|.|++||++.
T Consensus        84 ~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~G~  115 (135)
T 2vj3_A           84 DECASSPCLHNGRCLDKINEFQCECPTGFTGH  115 (135)
T ss_dssp             CTTTTCCSTTTCEEEECSSCEEEECCTTEESS
T ss_pred             CcccCCCcCCCCEeECCCCCeEEECCCCCcCC
Confidence                 2455 5799999999999999999764

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.58  E-value=1.5e-14  Score=87.70  Aligned_cols=96  Identities=38%  Similarity=0.942  Sum_probs=75.7

Q ss_pred             CCCCCCCCCCCeeeeCC--CceEEeCCCCcccCCccc------------cCCCCcCCCCCCCCEEe-------eCCCCeE
Q psy6349          48 ECESDPCQNGATCQDLI--GGYSCQCARGFQGQNCEL------------NVDDCKPNPCQNGGICH-------DLINHFS  106 (145)
Q Consensus        48 ~c~~~~c~~~~~c~~~~--~~~~c~c~~g~~g~~c~~------------~~~~c~~~~~~~~~~c~-------~~~~~~~  106 (145)
                      +|...||..++.|+...  ++|.|.|.++|.|..|..            .+++|...+|..++.|+       ++.+.|.
T Consensus         2 ~C~~~pC~~~g~C~~~~~~g~~~C~C~~G~~G~~C~~~~~~~~~~~~c~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~   81 (143)
T 4d90_A            2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYV   81 (143)
T ss_dssp             -CCSCCCGGGCEEEC-----CCEEECCTTCCTTTTCSCCCCTTTTTSCCCCCTTSSCCCCTTCEEEECCCEETTEECCEE
T ss_pred             cCCCCcCCCCCEeeCCCCCCCEEeECCCCCCCCCCccCccccccccccccCCcCCCCCCCCCCEecCCCccccCCCCCeE
Confidence            56778888889998764  579999999999988864            23566667788889998       4557899


Q ss_pred             eeCCCCCccC-----------CCCC-CCeeeeCCCceeEecCCCCCcCC
Q psy6349         107 CSCPSGLKRE-----------ALCH-NGTCEDFGNSHRCHCICWDDLRN  143 (145)
Q Consensus       107 C~c~~g~~~~-----------~~C~-~~~c~~~~g~~~c~c~~~~~~~~  143 (145)
                      |.|++||.+.           .+|. ++.|.+..++|+|.|++||++..
T Consensus        82 C~C~~G~~G~~C~~~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~  130 (143)
T 4d90_A           82 CKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRN  130 (143)
T ss_dssp             EECCTTEESTTSCEECCTTTTCCSCTTCEEEEETTEEEEECCTTCBSTT
T ss_pred             eECcCCCcCCCcccCCCcCCCCCCCCCCEeECCCCCeEeECCCCCccCC
Confidence            9999999864           2355 57999999999999999998764

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.53  E-value=7.2e-15  Score=92.85  Aligned_cols=113  Identities=22%  Similarity=0.566  Sum_probs=92.0

Q ss_pred             eeeecCCCCCC--CCCCCC-CEeeeCC-----CceeeecCCCcccCCCCccCCCCCCCCCCCCCeee----eCCCceEEe
Q psy6349           3 NLIVSSPGLKR--EALCHN-GTCEDFG-----NSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQ----DLIGGYSCQ   70 (145)
Q Consensus         3 ~~~~~~~~~~~--~~~c~~-~~c~~~~-----~~~~C~c~~g~~~~~c~~~~~~c~~~~c~~~~~c~----~~~~~~~c~   70 (145)
                      .|..+++|...  ..+|.+ +.|++..     ++|.|.|.+||.+..+...+++|...+|..++.|+    +..++|.|.
T Consensus        40 ~C~~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~~~C~~d~C~~~~C~~~g~C~~~~~~~~g~~~C~  119 (186)
T 1z1y_A           40 TCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCS  119 (186)
T ss_dssp             EEEECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEETTEEEEGGGTTCCCCTTEEEEEEEETTEEEEEEE
T ss_pred             ccCCCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccCCCCCCCCcCcCCCCCCCCEEeeCCcCCCCCceEE
Confidence            56677787654  677864 7999998     89999999999987543346889888998888998    677789999


Q ss_pred             CCCCccc-----CCcccc-CCCCcCCCC-CCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          71 CARGFQG-----QNCELN-VDDCKPNPC-QNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        71 c~~g~~g-----~~c~~~-~~~c~~~~~-~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      |..||.+     ..|... +++|. .+| ...+.|+++.++|.|.|++||.+.
T Consensus       120 C~~Gy~g~~~~~~~C~~~~~~~C~-~~C~~~~~~C~n~~g~y~C~C~~G~~g~  171 (186)
T 1z1y_A          120 CAIGXVPNPEDEXXCTXTGETACQ-LXCNTDNEVCXNVEGVYXCQCMEGFTFD  171 (186)
T ss_dssp             ECTEEEEETTTTTEEEEEECCCCC-CCCCTTTEEEEEETTEEEEEECTTCEEE
T ss_pred             CCCCCcccCCCCCcceEcCCCccc-ccccccCcceecCCCCeeeECCCCCccC
Confidence            9999987     667632 46776 378 778899999999999999999985

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.50  E-value=5.9e-14  Score=85.09  Aligned_cols=97  Identities=29%  Similarity=0.894  Sum_probs=74.7

Q ss_pred             CCCC-CCEeeeCCCceeeecCCCccc---------CCCCccCCCCCCC---CCCCCCeeeeCCCceEEeCCCCcccC---
Q psy6349          15 ALCH-NGTCEDFGNSHRCHCMEGYTG---------SYCSIEINECESD---PCQNGATCQDLIGGYSCQCARGFQGQ---   78 (145)
Q Consensus        15 ~~c~-~~~c~~~~~~~~C~c~~g~~~---------~~c~~~~~~c~~~---~c~~~~~c~~~~~~~~c~c~~g~~g~---   78 (145)
                      ++|. ++.|++.   |.|.|.+||.+         ..|+ ++++|...   +|..++.|++..++|.|.|.++|.+.   
T Consensus         7 ~~C~~~~~C~~~---~~C~C~~G~~g~~~~~~~~~~~C~-dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~   82 (143)
T 2bou_A            7 RWCPQDSSCVNA---TACRCNPGFSSFSEIITTPMETCD-DINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGA   82 (143)
T ss_dssp             TTCCTTEEESSS---SCEEECTTEECSSSSBCSTTCCCE-ECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTCC
T ss_pred             CcCCCCCEEcCC---CEEeCCCCCcCccccccCCCCcCC-ccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcCc
Confidence            5686 4789864   78999999997         4674 78888764   78888899999999999999999865   


Q ss_pred             ---------CccccCCCCc--CCCCCCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          79 ---------NCELNVDDCK--PNPCQNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        79 ---------~c~~~~~~c~--~~~~~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                               .|. ++++|.  ...|..++.|+++.++|.|.|++||.+.
T Consensus        83 ~~~~~~~~~~C~-dideC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~  130 (143)
T 2bou_A           83 KTFKNESENTCQ-DVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPR  130 (143)
T ss_dssp             SCBSSGGGCCEE-ECCHHHHTCCCCCTTSEEEECSSCEEEECCSSSCBC
T ss_pred             cccccCCCCCcC-CccCccCcCCCCCCCCEEECCCCCEEeeCCCCcccC
Confidence                     343 556665  2557667778877778888888888765

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.49  E-value=2.4e-13  Score=99.04  Aligned_cols=107  Identities=24%  Similarity=0.673  Sum_probs=87.6

Q ss_pred             cCCCCCCCCCCCC-CEeeeCCC-ceee-ecCCCccc--CCCCccCCCCCCCC--CCCCC---eeeeCCCceEEe-CCCCc
Q psy6349           7 SSPGLKREALCHN-GTCEDFGN-SHRC-HCMEGYTG--SYCSIEINECESDP--CQNGA---TCQDLIGGYSCQ-CARGF   75 (145)
Q Consensus         7 ~~~~~~~~~~c~~-~~c~~~~~-~~~C-~c~~g~~~--~~c~~~~~~c~~~~--c~~~~---~c~~~~~~~~c~-c~~g~   75 (145)
                      +++|  ..++|.+ +.|++..+ +|.| .|.+||.|  ..|+ .+++|...+  |..++   .|++..++|.|. |.+||
T Consensus         3 IDeC--~~nPC~~gg~C~n~~~Gsy~C~~C~~GytGdg~~Ce-DiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy   79 (634)
T 1yo8_A            3 PDGC--LSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCE-DLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRY   79 (634)
T ss_dssp             -CGG--GGCCSCTTCCEEECTTSCEEECCCCTTBCSCSSSCC-BCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTE
T ss_pred             cccc--CCCCCCCCCEEecCCCCCeECCcCCCccCCCCCCcc-ccccccCCCCcccCCccccceeeccCceecccCCCCc
Confidence            3445  3578974 79998874 5999 99999996  7886 889998877  88877   899999999998 99999


Q ss_pred             ccCCcc--------------ccCCCCcC--CCCCCCCEEeeCC----CCeEeeCCCCCccC
Q psy6349          76 QGQNCE--------------LNVDDCKP--NPCQNGGICHDLI----NHFSCSCPSGLKRE  116 (145)
Q Consensus        76 ~g~~c~--------------~~~~~c~~--~~~~~~~~c~~~~----~~~~C~c~~g~~~~  116 (145)
                      .|..+.              ..+.+|..  ..|..++.|+++.    ++|.|.|++||.+.
T Consensus        80 ~G~~c~g~g~~~~~~dg~~C~dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~Gd  140 (634)
T 1yo8_A           80 RGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGD  140 (634)
T ss_dssp             EECCCEESSSHHHHSCCCCEEECCTTTTTCCCCCTTEEEEECCTTCSSSEEEEECTTEEES
T ss_pred             ccCccccccccccccCCCcccccccccCCCcccccCccccccccccccceeeeccCCcccc
Confidence            876542              35778864  4788889999988    89999999999873

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=99.41  E-value=3.3e-14  Score=87.92  Aligned_cols=123  Identities=27%  Similarity=0.600  Sum_probs=82.9

Q ss_pred             ecCCCCCCCCCCCCCEeeeCCCceeeecCCCcc----cCCCCccCCC--CCCC--CC--CCCCeeeeCCC----ceEEeC
Q psy6349           6 VSSPGLKREALCHNGTCEDFGNSHRCHCMEGYT----GSYCSIEINE--CESD--PC--QNGATCQDLIG----GYSCQC   71 (145)
Q Consensus         6 ~~~~~~~~~~~c~~~~c~~~~~~~~C~c~~g~~----~~~c~~~~~~--c~~~--~c--~~~~~c~~~~~----~~~c~c   71 (145)
                      ++++|+. ..+|.++.|++..++|+|.|.+||.    +..|+ ++++  |...  ++  ...+.|.+..+    .|.|.|
T Consensus         2 dideC~~-~~~C~~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~-d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~C   79 (162)
T 1uzk_A            2 DVNECLD-PTTCISGNCVNTPGSYICDCPPDFELNPTRVGCV-DTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCC   79 (162)
T ss_dssp             CCCGGGS-TTSSBTSEEEEETTEEEEECCTTCEECTTSSBEE-CCCCEEEEEEC----------CEEEEEEEECHHHHHT
T ss_pred             ccccCCC-CCCCCCCEeECCCCCEEEeCCCCCeECCCCCccc-CCCCCcccCCCcccCCCCCCcccCCcCCcccCceeeC
Confidence            3556653 4678778999999999999999998    77885 5554  6542  23  23556776655    688999


Q ss_pred             CCCcc-cCCccccCCCCcCCCCCCCCEEeeCCCCeEeeCCC--CCccC----------------CCCCCCeeeeCCCcee
Q psy6349          72 ARGFQ-GQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPS--GLKRE----------------ALCHNGTCEDFGNSHR  132 (145)
Q Consensus        72 ~~g~~-g~~c~~~~~~c~~~~~~~~~~c~~~~~~~~C~c~~--g~~~~----------------~~C~~~~c~~~~g~~~  132 (145)
                      ..+|. +..|.    .|     ..     +..++|.|.|++  ||.+.                ..|.++.|.++.|+|+
T Consensus        80 ~~G~~~~~~C~----~C-----~~-----~~~~~y~C~C~~g~G~~~~~~~~~c~dideC~~~~~~C~~g~C~n~~gsy~  145 (162)
T 1uzk_A           80 SLGKAWGTPCE----MC-----PA-----VNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQ  145 (162)
T ss_dssp             TTCCEETTTTE----EC-----CC-----TTSHHHHHHCTTCTTEEECTTTCCEEECCHHHHCGGGGBTSEEEECSSCEE
T ss_pred             CCCCCcCCCcc----cC-----CC-----CCCCCceeECCCCCCcccCCCCCccCccccccCCCCCcCCCEeEcCCCCEE
Confidence            99986 55443    11     11     123456777776  66542                2365579999999999


Q ss_pred             EecCCCCCcCCC
Q psy6349         133 CHCICWDDLRNS  144 (145)
Q Consensus       133 c~c~~~~~~~~~  144 (145)
                      |.|++||++..+
T Consensus       146 C~C~~Gy~g~~d  157 (162)
T 1uzk_A          146 CRCPTGYYLNED  157 (162)
T ss_dssp             EECCTTCCBCTT
T ss_pred             eeCCCCccCCCC
Confidence            999999998754

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.40  E-value=1.8e-12  Score=94.57  Aligned_cols=97  Identities=31%  Similarity=0.771  Sum_probs=80.3

Q ss_pred             cCCCCCCCCCCCCCeeeeCCC-ceEE-eCCCCccc--CCccccCCCCcCCC--CCCCC---EEeeCCCCeEee-CCCCCc
Q psy6349          45 EINECESDPCQNGATCQDLIG-GYSC-QCARGFQG--QNCELNVDDCKPNP--CQNGG---ICHDLINHFSCS-CPSGLK  114 (145)
Q Consensus        45 ~~~~c~~~~c~~~~~c~~~~~-~~~c-~c~~g~~g--~~c~~~~~~c~~~~--~~~~~---~c~~~~~~~~C~-c~~g~~  114 (145)
                      ++++|...||..++.|++..+ +|.| .|.+||.|  ..|. .+++|...+  |..++   .|+++.++|+|. |++||.
T Consensus         2 DIDeC~~nPC~~gg~C~n~~~Gsy~C~~C~~GytGdg~~Ce-DiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~   80 (634)
T 1yo8_A            2 DPDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCE-DLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYR   80 (634)
T ss_dssp             --CGGGGCCSCTTCCEEECTTSCEEECCCCTTBCSCSSSCC-BCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEE
T ss_pred             cccccCCCCCCCCCEEecCCCCCeECCcCCCccCCCCCCcc-ccccccCCCCcccCCccccceeeccCceecccCCCCcc
Confidence            467888889999999998875 4999 99999986  7786 788997655  88877   899999999998 999997


Q ss_pred             cC---------------------------CCCC-CCeeeeCC----CceeEecCCCCCcC
Q psy6349         115 RE---------------------------ALCH-NGTCEDFG----NSHRCHCICWDDLR  142 (145)
Q Consensus       115 ~~---------------------------~~C~-~~~c~~~~----g~~~c~c~~~~~~~  142 (145)
                      +.                           ..|. ++.|.+..    ++|+|.|++||.+.
T Consensus        81 G~~c~g~g~~~~~~dg~~C~dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~Gd  140 (634)
T 1yo8_A           81 GNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGD  140 (634)
T ss_dssp             ECCCEESSSHHHHSCCCCEEECCTTTTTCCCCCTTEEEEECCTTCSSSEEEEECTTEEES
T ss_pred             cCccccccccccccCCCcccccccccCCCcccccCccccccccccccceeeeccCCcccc
Confidence            43                           1455 57899988    99999999999874

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.39  E-value=2.1e-12  Score=78.18  Aligned_cols=89  Identities=21%  Similarity=0.617  Sum_probs=72.0

Q ss_pred             CCCCCCCeeeeCCCceEEeCCCCccc---------CCccccCCCCcCC---CCCCCCEEeeCCCCeEeeCCCCCccC---
Q psy6349          52 DPCQNGATCQDLIGGYSCQCARGFQG---------QNCELNVDDCKPN---PCQNGGICHDLINHFSCSCPSGLKRE---  116 (145)
Q Consensus        52 ~~c~~~~~c~~~~~~~~c~c~~g~~g---------~~c~~~~~~c~~~---~~~~~~~c~~~~~~~~C~c~~g~~~~---  116 (145)
                      .+|..++.|++.   |.|.|.+||.|         ..|. ++++|...   +|..++.|+++.++|.|.|++||.+.   
T Consensus         7 ~~C~~~~~C~~~---~~C~C~~G~~g~~~~~~~~~~~C~-dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~   82 (143)
T 2bou_A            7 RWCPQDSSCVNA---TACRCNPGFSSFSEIITTPMETCD-DINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGA   82 (143)
T ss_dssp             TTCCTTEEESSS---SCEEECTTEECSSSSBCSTTCCCE-ECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTCC
T ss_pred             CcCCCCCEEcCC---CEEeCCCCCcCccccccCCCCcCC-ccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcCc
Confidence            457777788753   78999999986         4564 67888754   68888999999999999999999752   


Q ss_pred             ---------------------CCCC-CCeeeeCCCceeEecCCCCCcCCC
Q psy6349         117 ---------------------ALCH-NGTCEDFGNSHRCHCICWDDLRNS  144 (145)
Q Consensus       117 ---------------------~~C~-~~~c~~~~g~~~c~c~~~~~~~~~  144 (145)
                                           ..|. ++.|.++.|+|+|.|++||.+..+
T Consensus        83 ~~~~~~~~~~C~dideC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~  132 (143)
T 2bou_A           83 KTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHG  132 (143)
T ss_dssp             SCBSSGGGCCEEECCHHHHTCCCCCTTSEEEECSSCEEEECCSSSCBCTT
T ss_pred             cccccCCCCCcCCccCccCcCCCCCCCCEEECCCCCEEeeCCCCcccCCC
Confidence                                 3465 579999999999999999998754

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=99.32  E-value=2.1e-12  Score=75.65  Aligned_cols=99  Identities=30%  Similarity=0.744  Sum_probs=67.7

Q ss_pred             ecCCCCCCCCCCCCCEeeeC-CCceeeecCCCcccCCCCccCCCC----CCCCCCCCCeeeeCCCceEEeCCCCcc---c
Q psy6349           6 VSSPGLKREALCHNGTCEDF-GNSHRCHCMEGYTGSYCSIEINEC----ESDPCQNGATCQDLIGGYSCQCARGFQ---G   77 (145)
Q Consensus         6 ~~~~~~~~~~~c~~~~c~~~-~~~~~C~c~~g~~~~~c~~~~~~c----~~~~c~~~~~c~~~~~~~~c~c~~g~~---g   77 (145)
                      .+++|  ..++|.+ .|++. .++|.|.|.+||.+...  ++++|    ...+|.  +.|.+ .++|.|.|.+||.   +
T Consensus         3 dideC--~~~pC~~-~C~~~~~g~y~C~C~~Gy~g~~~--~~~~C~~~C~~~~C~--~~C~~-~~~y~C~C~~Gy~~~~g   74 (118)
T 1dx5_I            3 PVDPC--FRANCEY-QCQPLDQTSYLCVCAEGFAPIPH--EPHRCQMFCNQTACP--ADCDP-NTQASCECPEGYILDDG   74 (118)
T ss_dssp             CCCGG--GGCCCSS-EEEECSSSCEEEECCTTEEEETT--EEEEEEECCCSSEEE--CEECT-TSTTCEECCTTEEEETT
T ss_pred             ccccC--CCCCCCC-CCCCCCCCCEEeECCCCccccCC--CCCccccccCCCCCC--CcccC-CCCeEeECCCCccCCCC
Confidence            34455  4577865 99998 88999999999987643  22333    333443  56766 4788999999998   6


Q ss_pred             CCccccCCCCcC-CCCCCCCEEeeCCCCeEeeCCCCCcc
Q psy6349          78 QNCELNVDDCKP-NPCQNGGICHDLINHFSCSCPSGLKR  115 (145)
Q Consensus        78 ~~c~~~~~~c~~-~~~~~~~~c~~~~~~~~C~c~~g~~~  115 (145)
                      ..|. ++++|.. .+|  .+.|+++.++|.|.|++||.+
T Consensus        75 ~~C~-dideC~~~~~C--~~~C~n~~g~y~C~C~~G~~g  110 (118)
T 1dx5_I           75 FICT-DIDECENGGFC--SGVCHNLPGTFECICGPDSAL  110 (118)
T ss_dssp             TEEE-ECCHHHHCSSC--SSEEEECSSSEEEEECSSSSC
T ss_pred             Cccc-cccccCCCCCC--cCeEEeCCCCEEEECCCCCcc
Confidence            6674 6666654 445  566777777777777777754

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=99.23  E-value=1.7e-11  Score=71.80  Aligned_cols=92  Identities=28%  Similarity=0.684  Sum_probs=69.9

Q ss_pred             cCCCCCCCCCCCCCeeeeC-CCceEEeCCCCcccCCccccCCC----CcCCCCCCCCEEeeCCCCeEeeCCCCCc---cC
Q psy6349          45 EINECESDPCQNGATCQDL-IGGYSCQCARGFQGQNCELNVDD----CKPNPCQNGGICHDLINHFSCSCPSGLK---RE  116 (145)
Q Consensus        45 ~~~~c~~~~c~~~~~c~~~-~~~~~c~c~~g~~g~~c~~~~~~----c~~~~~~~~~~c~~~~~~~~C~c~~g~~---~~  116 (145)
                      ++++|...||..  .|++. .++|.|.|.+||.+....  +++    |....|.  +.|++ .++|.|.|++||.   +.
T Consensus         3 dideC~~~pC~~--~C~~~~~g~y~C~C~~Gy~g~~~~--~~~C~~~C~~~~C~--~~C~~-~~~y~C~C~~Gy~~~~g~   75 (118)
T 1dx5_I            3 PVDPCFRANCEY--QCQPLDQTSYLCVCAEGFAPIPHE--PHRCQMFCNQTACP--ADCDP-NTQASCECPEGYILDDGF   75 (118)
T ss_dssp             CCCGGGGCCCSS--EEEECSSSCEEEECCTTEEEETTE--EEEEEECCCSSEEE--CEECT-TSTTCEECCTTEEEETTT
T ss_pred             ccccCCCCCCCC--CCCCCCCCCEEeECCCCccccCCC--CCccccccCCCCCC--CcccC-CCCeEeECCCCccCCCCC
Confidence            578888888863  89998 899999999999876331  222    3233333  57776 4789999999998   32


Q ss_pred             -----------CCCCCCeeeeCCCceeEecCCCCCcCCC
Q psy6349         117 -----------ALCHNGTCEDFGNSHRCHCICWDDLRNS  144 (145)
Q Consensus       117 -----------~~C~~~~c~~~~g~~~c~c~~~~~~~~~  144 (145)
                                 ..| ++.|.++.|+|+|.|++||++..+
T Consensus        76 ~C~dideC~~~~~C-~~~C~n~~g~y~C~C~~G~~g~~~  113 (118)
T 1dx5_I           76 ICTDIDECENGGFC-SGVCHNLPGTFECICGPDSALAGQ  113 (118)
T ss_dssp             EEEECCHHHHCSSC-SSEEEECSSSEEEEECSSSSCEEE
T ss_pred             ccccccccCCCCCC-cCeEEeCCCCEEEECCCCCccCCC
Confidence                       356 679999999999999999988653

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=99.23  E-value=2.5e-11  Score=66.52  Aligned_cols=71  Identities=35%  Similarity=0.936  Sum_probs=49.2

Q ss_pred             eeecCCCCCCCCCCCCCEeeeCCCceeeecCCCcc--cCCCCccCCCCC-CCCCCCCCeeeeCCCceEEeCCCCccc
Q psy6349           4 LIVSSPGLKREALCHNGTCEDFGNSHRCHCMEGYT--GSYCSIEINECE-SDPCQNGATCQDLIGGYSCQCARGFQG   77 (145)
Q Consensus         4 ~~~~~~~~~~~~~c~~~~c~~~~~~~~C~c~~g~~--~~~c~~~~~~c~-~~~c~~~~~c~~~~~~~~c~c~~g~~g   77 (145)
                      |.++++|+. ..+|.++.|++..++|.|.|.+||.  |..|+ ++++|. ..+|.. +.|.+..++|.|.|..||.+
T Consensus         2 C~dideC~~-~~~C~~g~C~n~~g~y~C~C~~Gy~~~g~~C~-dideC~~~~~C~~-~~C~n~~g~y~C~C~~G~~g   75 (82)
T 1emn_A            2 AVDMDECKE-PDVCKHGQCINTDGSYRCECPFGYILAGNECV-DTDECSVGNPCGN-GTCKNVIGGFECTCEEGFEP   75 (82)
T ss_dssp             CCCCCSSSS-TTSCSSSEECCCSSCCCEECCTTEEEETTEEE-ECCGGGTCCTTSS-SCEEECSSSEEECCSSSSCC
T ss_pred             CCccccCCC-CCCcCCCEEEecCCCEEEECCCCeECCCCccC-CcccccCCCCCCC-CEeECCCCCEEeECCCCeEe
Confidence            345666654 4667667788777778888888886  66774 667775 456654 46777777777777777764

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=99.20  E-value=2.7e-11  Score=67.69  Aligned_cols=79  Identities=25%  Similarity=0.563  Sum_probs=64.1

Q ss_pred             ceeeecCCCcccCCCCccCCCCCCCCCCCCCeeeeCCCceEEeCCCCcccCCcc-ccCCCCcCCCCCCCCEEeeCC--CC
Q psy6349          28 SHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCE-LNVDDCKPNPCQNGGICHDLI--NH  104 (145)
Q Consensus        28 ~~~C~c~~g~~~~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~-~~~~~c~~~~~~~~~~c~~~~--~~  104 (145)
                      +|.|.|.+||.+..+  ++++|...||      ++..+.|.|.|.++|.  .|. .++++|...+|.+++.|++..  +.
T Consensus         1 sy~C~C~~g~~g~~c--~~~~c~~~pC------~n~~~~y~C~C~~G~~--~C~~~~~~~C~~~pC~ngg~C~~~~~~~~   70 (91)
T 1tpg_A            1 SYQVICRDEKTQMIY--QQHQSWLRPV------LRSNRVEYCWCNSGRA--QCHSVPVKSCSEPRCFNGGTCQQALYFSD   70 (91)
T ss_dssp             CCCCCCBCSSSCCBC--CSSCEEEEEC------SSSSCEEEEECSSSCC--BCCEECEEECSSCCSCTTCEEEEESSSSC
T ss_pred             CeeeECCCCCcCCeE--CCCcccCCcc------ccCCCCcEeECCCCCc--ccccCcCCcccCCCCCCCCEeecCCCCCC
Confidence            478999999999888  4677766655      3446789999999997  675 356788888899999999876  88


Q ss_pred             eEeeCCCCCccC
Q psy6349         105 FSCSCPSGLKRE  116 (145)
Q Consensus       105 ~~C~c~~g~~~~  116 (145)
                      |.|.|++||.+.
T Consensus        71 ~~C~C~~G~~G~   82 (91)
T 1tpg_A           71 FVCQCPEGFAGK   82 (91)
T ss_dssp             EEEECCTTCBSS
T ss_pred             eEeECCCCCcCC
Confidence            999999999875

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=99.17  E-value=1.3e-14  Score=95.16  Aligned_cols=100  Identities=13%  Similarity=0.132  Sum_probs=68.4

Q ss_pred             CCC-CCEeeeCCCceeeecCCCcccCCCCccCCC------CC-----------------------CCCCCCCCeeeeCCC
Q psy6349          16 LCH-NGTCEDFGNSHRCHCMEGYTGSYCSIEINE------CE-----------------------SDPCQNGATCQDLIG   65 (145)
Q Consensus        16 ~c~-~~~c~~~~~~~~C~c~~g~~~~~c~~~~~~------c~-----------------------~~~c~~~~~c~~~~~   65 (145)
                      +|. ++.|++..++|.|.|+.||+|..|+..+++      +.                       +.||..++.|+....
T Consensus        39 ~c~ngG~C~~g~~~y~C~Cp~Gf~G~~Ce~ni~ec~~~~~c~s~pC~nggtc~~G~~c~~~~eC~s~pC~ngG~C~~~~~  118 (267)
T 4fbr_A           39 KSDDGGKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVLGARDKQNIVAVSIKSNDGGKTLTGTT  118 (267)
T ss_dssp             ECSSTTSEEEEEEEETTSCCEEEEEEECSTTEEEEEEESSSTTSCEEEEEEEECCCCSSCCEEEEEEECSSTTSEEEEEE
T ss_pred             CcCCCCeecCCCCCeEEeCCCCcccccccccccccccccCcCCCcccCCCeeeccCccccccccCCCCCCCCCEEecCCc
Confidence            344 479999888999999999998888765555      33                       334555666776667


Q ss_pred             ceEEeCCCCcccCCccccCCCC------cCC-----------------------CCCCCCEEeeCCCCeEeeCCCCCcc
Q psy6349          66 GYSCQCARGFQGQNCELNVDDC------KPN-----------------------PCQNGGICHDLINHFSCSCPSGLKR  115 (145)
Q Consensus        66 ~~~c~c~~g~~g~~c~~~~~~c------~~~-----------------------~~~~~~~c~~~~~~~~C~c~~g~~~  115 (145)
                      +|.|.|+.+|.|..|...+++|      ...                       ++..++.|++...+|+|.|++||++
T Consensus       119 sy~C~C~~Gf~G~~Ce~~~d~C~n~~~c~s~pC~ngg~c~~G~~c~~~i~c~~~~c~ngg~C~dg~~~y~C~Cp~Gf~G  197 (267)
T 4fbr_A          119 TYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTRGKQNVINVDAKSNDGGKTLSGTMTYNGEGPIGFRG  197 (267)
T ss_dssp             EETTSCCEEEEEEECCCCEEEEEEECSSTTSCCEEEEEEECCSSTTSCEEEEEEECSSTTSEEEEEEEETTSCCEEEEE
T ss_pred             cEEeeCCCCccccCCCCCcccccccCCcCCccccCCcceecccccccccccCCCCCCCCCEeeCCCCCeEEeCCCCccc
Confidence            8889999999877665433331      111                       2445566666566677888888764

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=99.16  E-value=4.3e-11  Score=66.21  Aligned_cols=70  Identities=34%  Similarity=0.830  Sum_probs=48.6

Q ss_pred             ecCCCCCCCCCCCCCEeeeCCCceeeecCCCcc-----cCCCCccCCCCCCCC--CCCCCeeeeCCCceEEeCCCCccc
Q psy6349           6 VSSPGLKREALCHNGTCEDFGNSHRCHCMEGYT-----GSYCSIEINECESDP--CQNGATCQDLIGGYSCQCARGFQG   77 (145)
Q Consensus         6 ~~~~~~~~~~~c~~~~c~~~~~~~~C~c~~g~~-----~~~c~~~~~~c~~~~--c~~~~~c~~~~~~~~c~c~~g~~g   77 (145)
                      ++++|...+++|.++.|++..++|.|.|.+||.     +..|+ ++++|...+  |. ++.|++..++|.|.|.+||.+
T Consensus         2 dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~-dideC~~~~~~C~-~~~C~n~~g~y~C~C~~G~~~   78 (86)
T 1lmj_A            2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCM-DIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQL   78 (86)
T ss_dssp             CCCTTTTCSSTTTTSCEEEETTEEEECCCSSEEECTTTSSSEE-ECCHHHHCSSTTT-TSEEEEETTEEEEESCTTSCC
T ss_pred             ccccccCCCCCCCCCEEECCCCCEEeeCCCCcCccCCCCCccC-CcccccCCCCcCC-CCEeEcCCCCEEEECcCCccc
Confidence            356666666667667888888888888888886     55564 667776554  33 357777777777777777754

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=99.13  E-value=8.6e-11  Score=86.79  Aligned_cols=121  Identities=26%  Similarity=0.538  Sum_probs=87.3

Q ss_pred             CCCCCCCCCC-CEeeeCCCcee---eecCCCcccCCCCccC--------CCCCCC----CCCCCCeeeeCCCceEEeCC-
Q psy6349          10 GLKREALCHN-GTCEDFGNSHR---CHCMEGYTGSYCSIEI--------NECESD----PCQNGATCQDLIGGYSCQCA-   72 (145)
Q Consensus        10 ~~~~~~~c~~-~~c~~~~~~~~---C~c~~g~~~~~c~~~~--------~~c~~~----~c~~~~~c~~~~~~~~c~c~-   72 (145)
                      |.+...+|.+ +.|.+..|.+.   |.|.+||.|..|+..+        +.|...    +|..++.|..    +.|.|. 
T Consensus       435 C~C~~~pc~n~~~C~~g~G~~~~G~C~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~----g~C~C~~  510 (690)
T 3fcs_B          435 CACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC----GQCVCHS  510 (690)
T ss_dssp             CGGGTTCCTTCTTTTTTSEEEETTEEEECTTCCSSSSCCSCC------CCCCSSSSSSCGGGGSEEECS----SSEEECC
T ss_pred             cCCcCCCCCCCCcccCCCCeEeCCceEeCCCccCCceeeccCccCCccCCcCCCCCCCCCCCCCCEEEC----CeeEeec
Confidence            3445566754 57776666666   9999999999997544        457542    4777788862    479999 


Q ss_pred             ---CCcccCCccccCCCCcC---CCCCCCCEEeeCCCCeEeeCCCCCccC----------------CCCC-CCeeeeCCC
Q psy6349          73 ---RGFQGQNCELNVDDCKP---NPCQNGGICHDLINHFSCSCPSGLKRE----------------ALCH-NGTCEDFGN  129 (145)
Q Consensus        73 ---~g~~g~~c~~~~~~c~~---~~~~~~~~c~~~~~~~~C~c~~g~~~~----------------~~C~-~~~c~~~~g  129 (145)
                         ++|.|..|+.+...|..   ..|..++.|..    +.|.|.+||.+.                ..|. ++.|.+   
T Consensus       511 ~~~~Gy~G~~Ce~~~~~C~~~~~~~C~~~G~C~~----g~C~C~~Gy~G~~CeC~~~~~~C~~~~g~~C~~~G~C~~---  583 (690)
T 3fcs_B          511 SDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC----GDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC---  583 (690)
T ss_dssp             CSSCCCBSTTSCBCSSCCCBSSSSBGGGSEEEET----TEEEECTTEESSSSCEECCCTTTBCTTSSBTSSSCEEET---
T ss_pred             CCCCCeeCCCcCcccCcCcCCCCCCCCCCCEecC----CeeECcCCCcCCCCccCCCCCcccCCCCCCCCCCCEEeC---
Confidence               99999999756667764   35777888965    489999999875                1244 567754   


Q ss_pred             ceeEec-CCCCCcC
Q psy6349         130 SHRCHC-ICWDDLR  142 (145)
Q Consensus       130 ~~~c~c-~~~~~~~  142 (145)
                       .+|.| ++||.+.
T Consensus       584 -g~C~C~~~Gy~G~  596 (690)
T 3fcs_B          584 -GSCVCIQPGSYGD  596 (690)
T ss_dssp             -TEEECCSTTCBST
T ss_pred             -CEEECCCCCccCC
Confidence             27999 9999865

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=99.06  E-value=3.9e-10  Score=76.77  Aligned_cols=109  Identities=34%  Similarity=0.851  Sum_probs=57.8

Q ss_pred             CCCC-CCEeeeCCCceeeecCCCcccCCCCccCCCCCCCCCCCCCeeeeCCCceEEeCCCCcccCCccccCCCCcCCCCC
Q psy6349          15 ALCH-NGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQ   93 (145)
Q Consensus        15 ~~c~-~~~c~~~~~~~~C~c~~g~~~~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~~~~~~c~~~~~~   93 (145)
                      .+|. ++.|.+   .+.|.|.+||.|..|+.  +.|. .+|..++.|..   .+.|.|.++|.|..|..  ..|. ..|.
T Consensus       153 ~~C~~~G~C~~---~~~C~C~~G~~G~~C~~--~~C~-~~C~~~G~C~~---~~~C~C~~G~~G~~C~~--~~C~-~~C~  220 (324)
T 2ygq_A          153 GGCRNGGFCNE---RRICECPDGFHGPHCEK--ALCT-PRCMNGGLCVT---PGFCICPPGFYGVNCDK--ANCS-TTCF  220 (324)
T ss_dssp             SCCCSSCEECT---TSCEECCTTEESSSSCE--ESSS-SCCCTTCEECS---SCCEECCTTCBTTTTCB--CCCS-SCCC
T ss_pred             CCCCCCCEECC---CCeEECCCCCcCCCCCC--CCCC-CCCCCCCEEcC---CCEEeCCCCccCCCccc--CcCC-CCCC
Confidence            4676 378864   36799999999988853  4564 36777788864   35688888888887753  2343 3455


Q ss_pred             CCCEEeeCCCCeEeeCCCCCccC--------CCCC-CCeeeeCCCceeEecCCCCCc
Q psy6349          94 NGGICHDLINHFSCSCPSGLKRE--------ALCH-NGTCEDFGNSHRCHCICWDDL  141 (145)
Q Consensus        94 ~~~~c~~~~~~~~C~c~~g~~~~--------~~C~-~~~c~~~~g~~~c~c~~~~~~  141 (145)
                      .++.|+..   +.|.|.+||.+.        ..|. ++.|..   .++|.|++||.+
T Consensus       221 ~~G~C~~~---~~C~C~~G~~G~~C~~~~C~~~C~~~g~C~~---~~~C~C~~G~~G  271 (324)
T 2ygq_A          221 NGGTCFYP---GKCICPPGLEGEQCEISKCPQPCRNGGKCIG---KSKCKCSKGYQG  271 (324)
T ss_dssp             SSCCBSCS---SCBCCCTTCCTTTTC-------------------------------
T ss_pred             CCCeeCCC---CeeeCCCCccCCCCCcCcCCCcCCCCCEECC---CCEEECCCCCcC
Confidence            56666442   367777777664        1222 234442   345666666654

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=99.02  E-value=2.9e-10  Score=77.43  Aligned_cols=109  Identities=34%  Similarity=0.883  Sum_probs=44.3

Q ss_pred             CCC-CCEeeeCCCceeeecCCCcccCCCCccCCCCCCCCCCCCCeeeeCCCceEEeCCCCcccCCccccCCCCcCCCCCC
Q psy6349          16 LCH-NGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQN   94 (145)
Q Consensus        16 ~c~-~~~c~~~~~~~~C~c~~g~~~~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~~~~~~c~~~~~~~   94 (145)
                      .|. ++.|..   .+.|.|.+||.|..|+  ...|. .+|..++.|..   .+.|.|.++|.|..|.  +..|. .+|.+
T Consensus       186 ~C~~~G~C~~---~~~C~C~~G~~G~~C~--~~~C~-~~C~~~G~C~~---~~~C~C~~G~~G~~C~--~~~C~-~~C~~  253 (324)
T 2ygq_A          186 RCMNGGLCVT---PGFCICPPGFYGVNCD--KANCS-TTCFNGGTCFY---PGKCICPPGLEGEQCE--ISKCP-QPCRN  253 (324)
T ss_dssp             CCCTTCEECS---SCCEECCTTCBTTTTC--BCCCS-SCCCSSCCBSC---SSCBCCCTTCCTTTTC-------------
T ss_pred             CCCCCCEEcC---CCEEeCCCCccCCCcc--cCcCC-CCCCCCCeeCC---CCeeeCCCCccCCCCC--cCcCC-CcCCC
Confidence            565 478865   3579999999999995  34564 56888888864   3579999999999885  34454 45777


Q ss_pred             CCEEeeCCCCeEeeCCCCCccC--------CCCC-CCeeeeCCCceeEecCCCCCcC
Q psy6349          95 GGICHDLINHFSCSCPSGLKRE--------ALCH-NGTCEDFGNSHRCHCICWDDLR  142 (145)
Q Consensus        95 ~~~c~~~~~~~~C~c~~g~~~~--------~~C~-~~~c~~~~g~~~c~c~~~~~~~  142 (145)
                      ++.|+.   .+.|.|.+||.+.        ..|. ++.|.+   .++|.|++||.+.
T Consensus       254 ~g~C~~---~~~C~C~~G~~G~~C~~~~C~~~C~~~g~C~~---~~~C~C~~G~~G~  304 (324)
T 2ygq_A          254 GGKCIG---KSKCKCSKGYQGDLCSKPVCEPGCGAHGTCHE---PNKCQCQEGWHGR  304 (324)
T ss_dssp             ---------------------------------------------------------
T ss_pred             CCEECC---CCEEECCCCCcCCCCcCCCCCCCCCCCCEECC---CCEeECCCCCcCC
Confidence            788863   4689999999875        2344 567765   4689999999864

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=99.02  E-value=1e-09  Score=60.00  Aligned_cols=69  Identities=36%  Similarity=1.072  Sum_probs=52.7

Q ss_pred             cCCCCCC-CCCCCCCeeeeCCCceEEeCCCCcc--cCCccccCCCCc-CCCCCCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          45 EINECES-DPCQNGATCQDLIGGYSCQCARGFQ--GQNCELNVDDCK-PNPCQNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        45 ~~~~c~~-~~c~~~~~c~~~~~~~~c~c~~g~~--g~~c~~~~~~c~-~~~~~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      ++++|.. .+|.. +.|++..++|.|.|.+||.  |..|. ++++|. ..+|.+ +.|+++.++|.|.|++||.+.
T Consensus         4 dideC~~~~~C~~-g~C~n~~g~y~C~C~~Gy~~~g~~C~-dideC~~~~~C~~-~~C~n~~g~y~C~C~~G~~g~   76 (82)
T 1emn_A            4 DMDECKEPDVCKH-GQCINTDGSYRCECPFGYILAGNECV-DTDECSVGNPCGN-GTCKNVIGGFECTCEEGFEPG   76 (82)
T ss_dssp             CCCSSSSTTSCSS-SEECCCSSCCCEECCTTEEEETTEEE-ECCGGGTCCTTSS-SCEEECSSSEEECCSSSSCCC
T ss_pred             ccccCCCCCCcCC-CEEEecCCCEEEECCCCeECCCCccC-CcccccCCCCCCC-CEeECCCCCEEeECCCCeEeC
Confidence            6778875 67864 7899999999999999997  77784 677775 455654 477777777888888887764

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=99.01  E-value=6.6e-10  Score=67.33  Aligned_cols=69  Identities=35%  Similarity=0.848  Sum_probs=40.3

Q ss_pred             cCCCCCCCCCCCCCeeeeCCCceEEeCCCCcccCCccccCCCCcCCCCCCCCEE-eeCCCCeEeeCCCCCc
Q psy6349          45 EINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGIC-HDLINHFSCSCPSGLK  114 (145)
Q Consensus        45 ~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~~~~~~c~~~~~~~~~~c-~~~~~~~~C~c~~g~~  114 (145)
                      ++++|...||..++.|++..++|.|.|.+||.|..|. ++++|..........| ++..++|.|.|++||.
T Consensus        47 dideC~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~-~~deC~~~~~~C~~~C~~n~~g~y~C~C~~Gy~  116 (146)
T 1x7a_L           47 DGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCE-LDATCNIKNGRCKQFCKTGADSKVLCSCTTGYR  116 (146)
T ss_dssp             ---CCSSCSSCTTCEEEECSSCEEEECCSSEESTTTC-EECCTTSGGGSCSSBCCCCSSSCCCCBCCTTEE
T ss_pred             CcCcCCCCCCCCCCEeECCCCCEEEecCCCCcCCcCC-CCccccCCCCCCcCCCCCCCCCCEEeEcCCCcE
Confidence            5566666666666667666666677777777666665 3455654322222356 6666666677777666

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=99.01  E-value=2.4e-10  Score=63.27  Aligned_cols=70  Identities=29%  Similarity=0.808  Sum_probs=52.3

Q ss_pred             cCCCCCCCCCCCCCEeeeCCCceeeecCCCcc----cCCCCccCCCCCCCCCCCCCeeeeCCCceEEeCCCCcccCCc
Q psy6349           7 SSPGLKREALCHNGTCEDFGNSHRCHCMEGYT----GSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNC   80 (145)
Q Consensus         7 ~~~~~~~~~~c~~~~c~~~~~~~~C~c~~g~~----~~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c   80 (145)
                      +++|...+.+|.++.|++..+.|.|.|.+||.    +..|+ ++++|...+|.  +.|++..++|.|.|. ++.|..+
T Consensus         3 ideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~-dideC~~~~C~--~~C~n~~g~y~C~C~-g~~G~~~   76 (87)
T 1z6c_A            3 VDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCE-DIDECSENMCA--QLCVNYPGGYTCYCD-GKKGFKL   76 (87)
T ss_dssp             SCSSSSSSSSBTTSSCCCBTTBCCCSSSTTCEEETTTTEEE-CCCHHHHSCCS--SEECCCSSSCCEECC-SSSCCBC
T ss_pred             cccccCCCCCCCCCEeECCCCCEEEECCCCceECCCCCcCC-CcCeeCCCCCC--CEEEccCCCEEEECC-CCcCCcc
Confidence            55666665567557888888889999999998    67774 77888777775  588888888999986 4444444

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=99.00  E-value=6e-10  Score=69.19  Aligned_cols=106  Identities=29%  Similarity=0.776  Sum_probs=74.3

Q ss_pred             CEeeeCCCceeeecCCCcccCCCCccCCCCCCCCCC-CCCeeeeCCCceEEeCCCCcccCCccccCCCCcCCC-CCCCCE
Q psy6349          20 GTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQ-NGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNP-CQNGGI   97 (145)
Q Consensus        20 ~~c~~~~~~~~C~c~~g~~~~~c~~~~~~c~~~~c~-~~~~c~~~~~~~~c~c~~g~~g~~c~~~~~~c~~~~-~~~~~~   97 (145)
                      +.|..   ...|.|.+||.|..|+  ...|.. .|. .++.|..   .+.|.|.++|.|..|..    |...+ |.+ +.
T Consensus        44 g~C~~---~g~C~C~~G~~G~~C~--~~~C~~-~C~~~~g~C~~---~~~C~C~~G~~G~~C~~----C~~~~~C~~-g~  109 (169)
T 2vj2_A           44 YACDQ---NGNKTCMEGWMGPECN--RAICRQ-GCSPKHGSCKL---PGDCRCQYGWQGLYCDK----CIPHPGCVH-GI  109 (169)
T ss_dssp             EEECS---SCCEEECTTEESTTSC--EECCCT-TCCTTTEECSS---TTCCEECTTEESSSSCE----ECCCTTCSS-EE
T ss_pred             CEeCC---CCeeECCCCCcCCCCC--CCCCCC-CCCCCCcccCC---CCeeECCCCCCCCCccc----CCCCCCCCC-CC
Confidence            45642   2367999999999985  344543 343 3455653   46799999999988852    33333 443 36


Q ss_pred             EeeCCCCeEeeCCCCCccC------------CCCC-CCeeeeC-CCceeEecCCCCCcC
Q psy6349          98 CHDLINHFSCSCPSGLKRE------------ALCH-NGTCEDF-GNSHRCHCICWDDLR  142 (145)
Q Consensus        98 c~~~~~~~~C~c~~g~~~~------------~~C~-~~~c~~~-~g~~~c~c~~~~~~~  142 (145)
                      |+   +.+.|.|++||.+.            .+|. ++.|.+. .++|+|.|++||++.
T Consensus       110 C~---~~~~C~C~~G~~G~~C~~~~~~C~~~~~C~~~g~C~~~~~~~~~C~C~~G~~G~  165 (169)
T 2vj2_A          110 CN---EPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGP  165 (169)
T ss_dssp             CS---STTCCEECTTEETTTTCEESCHHHHTCCCCTTCEEEECSTTCEEEECCTTCCST
T ss_pred             cC---CCCEEeCCCCCCCCcccCCCCCCCCCCCCCCCCEEcCCCCCCcEeECCCCCcCc
Confidence            65   46789999999764            3465 5799986 789999999999875

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=99.00  E-value=3.6e-11  Score=73.08  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=27.3

Q ss_pred             ecCCCCCCCCCCCCCEeeeCCCceeeecCCCcccCC
Q psy6349           6 VSSPGLKREALCHNGTCEDFGNSHRCHCMEGYTGSY   41 (145)
Q Consensus         6 ~~~~~~~~~~~c~~~~c~~~~~~~~C~c~~g~~~~~   41 (145)
                      ++++|+  ..+|.++.|++..++|.|.|.+||.+..
T Consensus         3 dideC~--~~pC~ng~C~n~~g~y~C~C~~G~~g~~   36 (147)
T 2w86_A            3 DIDECE--SSPCINGVCKNSPGSFICECSSESTLDP   36 (147)
T ss_dssp             CCCGGG--GCCSBTSEEEEETTEEEEECCTTEEECT
T ss_pred             cCccCc--CCCCCCCEeECCCCCEEeECCCCcccCC
Confidence            345554  4679878999999999999999998654

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=98.99  E-value=1.3e-10  Score=70.65  Aligned_cols=100  Identities=26%  Similarity=0.640  Sum_probs=64.5

Q ss_pred             ccCCCCCCCCCCCCCeeeeCCCceEEeCCCCcccCC----ccccCC-CCcC----CCC-------CCCCEEeeCCCC---
Q psy6349          44 IEINECESDPCQNGATCQDLIGGYSCQCARGFQGQN----CELNVD-DCKP----NPC-------QNGGICHDLINH---  104 (145)
Q Consensus        44 ~~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~----c~~~~~-~c~~----~~~-------~~~~~c~~~~~~---  104 (145)
                      .++++|...||.+ +.|++..++|.|.|.++|.+..    |..... .|..    ..|       .....|.+..+.   
T Consensus         2 ~dideC~~~pC~n-g~C~n~~g~y~C~C~~G~~g~~~~~~C~~~~~~~C~~~~~g~~C~~~~~~c~~~~~C~~~~g~~~g   80 (147)
T 2w86_A            2 ADIDECESSPCIN-GVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWG   80 (147)
T ss_dssp             CCCCGGGGCCSBT-SEEEEETTEEEEECCTTEEECTTSSBEEECCCEEEEEEEETTEEEEEEEEEECHHHHHTTTCSEET
T ss_pred             CcCccCcCCCCCC-CEeECCCCCEEeECCCCcccCCCCCeecCCCCCcccCCCCCCccccCCCccccCCccccCcCcccC
Confidence            3678898889975 6999999999999999998542    221000 0000    000       000011111121   


Q ss_pred             -------eEeeCCCCCc---cC------------CCCCCCeeeeCCCceeEecCCCCCcCCC
Q psy6349         105 -------FSCSCPSGLK---RE------------ALCHNGTCEDFGNSHRCHCICWDDLRNS  144 (145)
Q Consensus       105 -------~~C~c~~g~~---~~------------~~C~~~~c~~~~g~~~c~c~~~~~~~~~  144 (145)
                             |.|.|++||.   +.            ..|.++.|.++.|+|+|.|++||++..+
T Consensus        81 ~~C~~c~~~C~C~~Gy~~~~g~~C~dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~g~~~  142 (147)
T 2w86_A           81 SPCTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDAT  142 (147)
T ss_dssp             TTTEECCCCTTTCTTEEEEETTEEEECCHHHHSTTCSSSSEEEEETTEEEEECCTTCCBCTT
T ss_pred             CCcccCCCcccCCCccccCCCCccCccccccCCCCCCCCCEEECCCCCEEeeCCCCCccCCC
Confidence                   5678999995   21            2376679999999999999999998754

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=98.96  E-value=1.9e-09  Score=62.65  Aligned_cols=73  Identities=30%  Similarity=0.639  Sum_probs=48.7

Q ss_pred             eecCCCCCCC------CCCC-CCEeeeCCCceeeecCCCcccCCCCccC--CCCCCCCCCCCCeeeeCCCceEEeCCCCc
Q psy6349           5 IVSSPGLKRE------ALCH-NGTCEDFGNSHRCHCMEGYTGSYCSIEI--NECESDPCQNGATCQDLIGGYSCQCARGF   75 (145)
Q Consensus         5 ~~~~~~~~~~------~~c~-~~~c~~~~~~~~C~c~~g~~~~~c~~~~--~~c~~~~c~~~~~c~~~~~~~~c~c~~g~   75 (145)
                      .++++|+..+      +.|. ++.|++..++|.|.|.+||.|..|+..+  ++|...+......|++..++|.|.|..||
T Consensus         4 ~d~d~C~~~p~~~~C~~~C~~~g~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~C~~~~~~C~~~C~n~~g~y~C~C~~G~   83 (114)
T 1aut_L            4 VDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGY   83 (114)
T ss_dssp             ----CCCCCSSCCSSSSTTTTSEEECCCSSCCCEEECTTEESTTSCEECCSSSSSSGGGGCSSEEEECSSSEEEECCTTE
T ss_pred             eecccccCCCccccccccCCCcCCCCCCCCCcEeeCCCCCcCCCcCcCCcCCcCcCCCCCCCCEeECCCCCEEeECCCCe
Confidence            3455555443      3365 4789988888999999999998886322  35654322223378888889999999998


Q ss_pred             cc
Q psy6349          76 QG   77 (145)
Q Consensus        76 ~g   77 (145)
                      .+
T Consensus        84 ~~   85 (114)
T 1aut_L           84 KL   85 (114)
T ss_dssp             EE
T ss_pred             eE
Confidence            73

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=98.96  E-value=1e-09  Score=60.56  Aligned_cols=69  Identities=35%  Similarity=1.118  Sum_probs=47.2

Q ss_pred             cCCCCCCCC--CCCCCeeeeCCCceEEeCCCCcc-----cCCccccCCCCcCCC--CCCCCEEeeCCCCeEeeCCCCCcc
Q psy6349          45 EINECESDP--CQNGATCQDLIGGYSCQCARGFQ-----GQNCELNVDDCKPNP--CQNGGICHDLINHFSCSCPSGLKR  115 (145)
Q Consensus        45 ~~~~c~~~~--c~~~~~c~~~~~~~~c~c~~g~~-----g~~c~~~~~~c~~~~--~~~~~~c~~~~~~~~C~c~~g~~~  115 (145)
                      ++++|...+  |.. +.|++..++|.|.|.+||.     +..|. ++++|...+  |. ++.|+++.++|.|.|++||.+
T Consensus         2 dideC~~~~~~C~~-g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~-dideC~~~~~~C~-~~~C~n~~g~y~C~C~~G~~~   78 (86)
T 1lmj_A            2 DIDECRISPDLCGR-GQCVNTPGDFECKCDEGYESGFMMMKNCM-DIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQL   78 (86)
T ss_dssp             CCCTTTTCSSTTTT-SCEEEETTEEEECCCSSEEECTTTSSSEE-ECCHHHHCSSTTT-TSEEEEETTEEEEESCTTSCC
T ss_pred             ccccccCCCCCCCC-CEEECCCCCEEeeCCCCcCccCCCCCccC-CcccccCCCCcCC-CCEeEcCCCCEEEECcCCccc
Confidence            467777655  754 4899999999999999997     55664 666665433  33 356766666777777777665


Q ss_pred             C
Q psy6349         116 E  116 (145)
Q Consensus       116 ~  116 (145)
                      .
T Consensus        79 ~   79 (86)
T 1lmj_A           79 S   79 (86)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=98.92  E-value=7.6e-10  Score=68.70  Aligned_cols=88  Identities=34%  Similarity=1.018  Sum_probs=68.6

Q ss_pred             CCCEeeeCCCceeeecCCCcccCCCCccCCCCCCCC-CCCCCeeeeCCCceEEeCCCCcccCCccccCCCCcC-CCCCCC
Q psy6349          18 HNGTCEDFGNSHRCHCMEGYTGSYCSIEINECESDP-CQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKP-NPCQNG   95 (145)
Q Consensus        18 ~~~~c~~~~~~~~C~c~~g~~~~~c~~~~~~c~~~~-c~~~~~c~~~~~~~~c~c~~g~~g~~c~~~~~~c~~-~~~~~~   95 (145)
                      .++.|.+   .+.|.|.+||.|..|+    +|...+ |..+ .|+   +.+.|.|.++|.|..|..++++|.. .+|..+
T Consensus        75 ~~g~C~~---~~~C~C~~G~~G~~C~----~C~~~~~C~~g-~C~---~~~~C~C~~G~~G~~C~~~~~~C~~~~~C~~~  143 (169)
T 2vj2_A           75 KHGSCKL---PGDCRCQYGWQGLYCD----KCIPHPGCVHG-ICN---EPWQCLCETNWGGQLCDKDLNYCGTHQPCLNG  143 (169)
T ss_dssp             TTEECSS---TTCCEECTTEESSSSC----EECCCTTCSSE-ECS---STTCCEECTTEETTTTCEESCHHHHTCCCCTT
T ss_pred             CCcccCC---CCeeECCCCCCCCCcc----cCCCCCCCCCC-CcC---CCCEEeCCCCCCCCcccCCCCCCCCCCCCCCC
Confidence            3566764   4689999999999884    244444 5533 675   4678999999999999766777764 678889


Q ss_pred             CEEeeC-CCCeEeeCCCCCccC
Q psy6349          96 GICHDL-INHFSCSCPSGLKRE  116 (145)
Q Consensus        96 ~~c~~~-~~~~~C~c~~g~~~~  116 (145)
                      +.|+++ .++|.|.|++||.+.
T Consensus       144 g~C~~~~~~~~~C~C~~G~~G~  165 (169)
T 2vj2_A          144 GTCSNTGPDKYQCSCPEGYSGP  165 (169)
T ss_dssp             CEEEECSTTCEEEECCTTCCST
T ss_pred             CEEcCCCCCCcEeECCCCCcCc
Confidence            999986 788999999999885

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=98.91  E-value=2.4e-09  Score=62.23  Aligned_cols=72  Identities=31%  Similarity=0.696  Sum_probs=54.0

Q ss_pred             cCCCCCCCC--------CCCCCeeeeCCCceEEeCCCCcccCCccccC--CCCcCCCCCCCCEEeeCCCCeEeeCCCCCc
Q psy6349          45 EINECESDP--------CQNGATCQDLIGGYSCQCARGFQGQNCELNV--DDCKPNPCQNGGICHDLINHFSCSCPSGLK  114 (145)
Q Consensus        45 ~~~~c~~~~--------c~~~~~c~~~~~~~~c~c~~g~~g~~c~~~~--~~c~~~~~~~~~~c~~~~~~~~C~c~~g~~  114 (145)
                      ++++|...|        |..++.|++..++|.|.|..||.|..|...+  ++|..........|+++.++|.|.|++||.
T Consensus         5 d~d~C~~~p~~~~C~~~C~~~g~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~C~~~~~~C~~~C~n~~g~y~C~C~~G~~   84 (114)
T 1aut_L            5 DGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYK   84 (114)
T ss_dssp             ---CCCCCSSCCSSSSTTTTSEEECCCSSCCCEEECTTEESTTSCEECCSSSSSSGGGGCSSEEEECSSSEEEECCTTEE
T ss_pred             ecccccCCCccccccccCCCcCCCCCCCCCcEeeCCCCCcCCCcCcCCcCCcCcCCCCCCCCEeECCCCCEEeECCCCee
Confidence            456666666        7788899988899999999999999887433  356543323334899999999999999998


Q ss_pred             cC
Q psy6349         115 RE  116 (145)
Q Consensus       115 ~~  116 (145)
                      +.
T Consensus        85 ~~   86 (114)
T 1aut_L           85 LG   86 (114)
T ss_dssp             EC
T ss_pred             EC
Confidence            64

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=98.90  E-value=3.5e-09  Score=59.04  Aligned_cols=63  Identities=30%  Similarity=0.830  Sum_probs=52.7

Q ss_pred             EeeeCCCceeeecCCCcccCCCC-ccCCCCCCCCCCCCCeeeeCC--CceEEeCCCCcccCCccccCC
Q psy6349          21 TCEDFGNSHRCHCMEGYTGSYCS-IEINECESDPCQNGATCQDLI--GGYSCQCARGFQGQNCELNVD   85 (145)
Q Consensus        21 ~c~~~~~~~~C~c~~g~~~~~c~-~~~~~c~~~~c~~~~~c~~~~--~~~~c~c~~g~~g~~c~~~~~   85 (145)
                      .|++..+.|.|.|.+||.  .|+ .++++|.+.||.+++.|++..  +.|.|.|..+|.|..|..+++
T Consensus        24 pC~n~~~~y~C~C~~G~~--~C~~~~~~~C~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~id   89 (91)
T 1tpg_A           24 PVLRSNRVEYCWCNSGRA--QCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR   89 (91)
T ss_dssp             ECSSSSCEEEEECSSSCC--BCCEECEEECSSCCSCTTCEEEEESSSSCEEEECCTTCBSSSCCBCSS
T ss_pred             ccccCCCCcEeECCCCCc--ccccCcCCcccCCCCCCCCEeecCCCCCCeEeECCCCCcCCcCCcCCC
Confidence            455667789999999997  775 367889999999999999876  899999999999999975443

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=98.90  E-value=2.6e-09  Score=64.43  Aligned_cols=74  Identities=28%  Similarity=0.662  Sum_probs=44.5

Q ss_pred             ecCCCCCCCCCCCC-CEeeeCCCceeeecCCCcccCCCCccCCCCCCCCCCCCC---eeeeCCC-ceEEeCCCCcc----
Q psy6349           6 VSSPGLKREALCHN-GTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGA---TCQDLIG-GYSCQCARGFQ----   76 (145)
Q Consensus         6 ~~~~~~~~~~~c~~-~~c~~~~~~~~C~c~~g~~~~~c~~~~~~c~~~~c~~~~---~c~~~~~-~~~c~c~~g~~----   76 (145)
                      .++.|.  .++|.+ +.|++..++|.|.|.+||.|..|+..++.+...++..+.   .|++..+ +|.|.|..||.    
T Consensus        46 did~C~--~~pC~n~g~C~~~~g~y~C~C~~G~~G~~C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~d  123 (142)
T 2c4f_L           46 DGDQCA--SSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLAD  123 (142)
T ss_dssp             TCCGGG--GCCCCTTCEEEEETTEEEEECCTTEESTTSCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTEEECTT
T ss_pred             ccCcCc--CCCcCCCCEEeCCCCCEEeeCCCCccCCccccCccccccccCCCCCccCEeECCCCCCEEEECCCCceECCC
Confidence            344443  456764 677777777777777777777775333443222222222   6776666 77777777776    


Q ss_pred             cCCcc
Q psy6349          77 GQNCE   81 (145)
Q Consensus        77 g~~c~   81 (145)
                      |..|.
T Consensus       124 G~~C~  128 (142)
T 2c4f_L          124 GVSCT  128 (142)
T ss_dssp             SSCEE
T ss_pred             CCCCC
Confidence            55554

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=98.89  E-value=1.8e-09  Score=65.42  Aligned_cols=71  Identities=24%  Similarity=0.492  Sum_probs=39.9

Q ss_pred             eeecCCCCCCCCCCCC-CEeeeCCCceeeecCCCcccCCCCccCCCCCCCCCCCCCee-eeCCCceEEeCCCCccc
Q psy6349           4 LIVSSPGLKREALCHN-GTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATC-QDLIGGYSCQCARGFQG   77 (145)
Q Consensus         4 ~~~~~~~~~~~~~c~~-~~c~~~~~~~~C~c~~g~~~~~c~~~~~~c~~~~c~~~~~c-~~~~~~~~c~c~~g~~g   77 (145)
                      |..++.|.  .++|.+ +.|++..++|.|.|.+||.|..|+ ++++|...+......| .+..++|.|.|..||.+
T Consensus        45 c~dideC~--~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~-~~deC~~~~~~C~~~C~~n~~g~y~C~C~~Gy~l  117 (146)
T 1x7a_L           45 YVDGDQCE--PNPCLNGGLCKDDINSYECWCQVGFEGKNCE-LDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRL  117 (146)
T ss_dssp             -----CCS--SCSSCTTCEEEECSSCEEEECCSSEESTTTC-EECCTTSGGGSCSSBCCCCSSSCCCCBCCTTEEE
T ss_pred             CCCcCcCC--CCCCCCCCEeECCCCCEEEecCCCCcCCcCC-CCccccCCCCCCcCCCCCCCCCCEEeEcCCCcEe
Confidence            44455553  456654 577776666777777777777774 4466654322222366 66666777777777653

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=98.89  E-value=4.2e-10  Score=71.09  Aligned_cols=77  Identities=27%  Similarity=0.649  Sum_probs=22.8

Q ss_pred             eeeecCCCCCCCCCCCC-CEeeeCCCceeeecCCCcccCCCCccC-CCCCCCCCCCCCeeeeCCCceEEeCCCCcc----
Q psy6349           3 NLIVSSPGLKREALCHN-GTCEDFGNSHRCHCMEGYTGSYCSIEI-NECESDPCQNGATCQDLIGGYSCQCARGFQ----   76 (145)
Q Consensus         3 ~~~~~~~~~~~~~~c~~-~~c~~~~~~~~C~c~~g~~~~~c~~~~-~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~----   76 (145)
                      .|..++.|.  ..+|.+ +.|++..++|.|.|.+||.|..|+..+ ++|...+......|.+..++|.|.|..||.    
T Consensus        38 ~c~dideC~--~~pC~ngg~C~n~~g~y~C~C~~Gf~G~~Ce~~i~deC~~~~~~C~~~C~n~~gsy~C~C~~Gy~l~~d  115 (195)
T 1nfu_B           38 KYKDGDQCE--TSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADN  115 (195)
T ss_dssp             ---------------------------------------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEECTT
T ss_pred             cCCCCcccC--CCCCCCCCEeECCCCCeeEeCCCCceeccccccccccccCCCCCCCCEeECCCCCeEEECCCCceeCCC
Confidence            344555554  456764 678877777888888888888886434 567653322223777777888888888887    


Q ss_pred             cCCcc
Q psy6349          77 GQNCE   81 (145)
Q Consensus        77 g~~c~   81 (145)
                      |..|.
T Consensus       116 G~~C~  120 (195)
T 1nfu_B          116 GKACI  120 (195)
T ss_dssp             SSCEE
T ss_pred             CCccc
Confidence            66665

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=98.84  E-value=5.2e-09  Score=63.13  Aligned_cols=71  Identities=38%  Similarity=0.820  Sum_probs=56.3

Q ss_pred             cCCCCCCCCCCCCCeeeeCCCceEEeCCCCcccCCccccCCCCcCCCCCCC---CEEeeCCC-CeEeeCCCCCcc
Q psy6349          45 EINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNG---GICHDLIN-HFSCSCPSGLKR  115 (145)
Q Consensus        45 ~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~~~~~~c~~~~~~~~---~~c~~~~~-~~~C~c~~g~~~  115 (145)
                      ++++|...||..++.|++..++|.|.|..||.|..|...++++..-.+..+   ..|++..+ +|.|.|++||.+
T Consensus        46 did~C~~~pC~n~g~C~~~~g~y~C~C~~G~~G~~C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l  120 (142)
T 2c4f_L           46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSL  120 (142)
T ss_dssp             TCCGGGGCCCCTTCEEEEETTEEEEECCTTEESTTSCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTEEE
T ss_pred             ccCcCcCCCcCCCCEEeCCCCCEEeeCCCCccCCccccCccccccccCCCCCccCEeECCCCCCEEEECCCCceE
Confidence            678898899999999999999999999999999999754444422222222   28988888 999999999985

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=98.81  E-value=1e-08  Score=75.90  Aligned_cols=90  Identities=28%  Similarity=0.705  Sum_probs=70.4

Q ss_pred             CCCC-CCEeeeCCCceeeecC----CCcccCCCCccCCCCCC---CCCCCCCeeeeCCCceEEeCCCCcccCCcc--ccC
Q psy6349          15 ALCH-NGTCEDFGNSHRCHCM----EGYTGSYCSIEINECES---DPCQNGATCQDLIGGYSCQCARGFQGQNCE--LNV   84 (145)
Q Consensus        15 ~~c~-~~~c~~~~~~~~C~c~----~g~~~~~c~~~~~~c~~---~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~--~~~   84 (145)
                      .+|. +|.|..    +.|.|.    +||.|..|+.+...|..   .+|..++.|..    +.|.|.+||.|..|.  ...
T Consensus       493 ~~Cs~~G~C~~----g~C~C~~~~~~Gy~G~~Ce~~~~~C~~~~~~~C~~~G~C~~----g~C~C~~Gy~G~~CeC~~~~  564 (690)
T 3fcs_B          493 PVCSQRGECLC----GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC----GDCLCDSDWTGYYCNCTTRT  564 (690)
T ss_dssp             CGGGGSEEECS----SSEEECCCSSCCCBSTTSCBCSSCCCBSSSSBGGGSEEEET----TEEEECTTEESSSSCEECCC
T ss_pred             CCCCCCCEEEC----CeeEeecCCCCCeeCCCcCcccCcCcCCCCCCCCCCCEecC----CeeECcCCCcCCCCccCCCC
Confidence            3475 478873    479999    99999999766677864   46877888864    689999999999986  345


Q ss_pred             CCCcC---CCCCCCCEEeeCCCCeEeeC-CCCCccC
Q psy6349          85 DDCKP---NPCQNGGICHDLINHFSCSC-PSGLKRE  116 (145)
Q Consensus        85 ~~c~~---~~~~~~~~c~~~~~~~~C~c-~~g~~~~  116 (145)
                      ..|..   ..|..++.|+..    .|.| .+||.+.
T Consensus       565 ~~C~~~~g~~C~~~G~C~~g----~C~C~~~Gy~G~  596 (690)
T 3fcs_B          565 DTCMSSNGLLCSGRGKCECG----SCVCIQPGSYGD  596 (690)
T ss_dssp             TTTBCTTSSBTSSSCEEETT----EEECCSTTCBST
T ss_pred             CcccCCCCCCCCCCCEEeCC----EEECCCCCccCC
Confidence            67764   468888999653    8999 9999985

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=98.80  E-value=1.8e-09  Score=64.51  Aligned_cols=70  Identities=39%  Similarity=0.930  Sum_probs=18.3

Q ss_pred             cCCCCCCCCCCCCCeeeeCCCceEEeCCCCcccCCccccC-CCCcCCCCCCCCEEeeCCCCeEeeCCCCCc
Q psy6349          45 EINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNV-DDCKPNPCQNGGICHDLINHFSCSCPSGLK  114 (145)
Q Consensus        45 ~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~~~~-~~c~~~~~~~~~~c~~~~~~~~C~c~~g~~  114 (145)
                      ++++|.+.||..++.|++..++|.|.|..||.|..|...+ ++|..........|++..++|.|.|++||.
T Consensus        41 d~d~C~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~~i~d~C~~~~~~C~~~C~~~~g~y~C~C~~Gy~  111 (134)
T 2vh0_B           41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYT  111 (134)
T ss_dssp             ----------------------------------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEE
T ss_pred             CcCcCCCCCCCCcCCcccCCCCEEeeCCCCccCCccccCCCCccccCCCCCCCEeECCCCCEEEECCCCcE
Confidence            5667777777777777777777777777777777776434 556543222223777777777777777776

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=98.79  E-value=1.2e-09  Score=68.95  Aligned_cols=71  Identities=38%  Similarity=0.907  Sum_probs=23.4

Q ss_pred             cCCCCCCCCCCCCCeeeeCCCceEEeCCCCcccCCccccC-CCCcCCCCCCCCEEeeCCCCeEeeCCCCCcc
Q psy6349          45 EINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNV-DDCKPNPCQNGGICHDLINHFSCSCPSGLKR  115 (145)
Q Consensus        45 ~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~~~~-~~c~~~~~~~~~~c~~~~~~~~C~c~~g~~~  115 (145)
                      ++++|...||..++.|++..++|.|.|.+||.|..|...+ ++|..........|++..++|.|.|++||.+
T Consensus        41 dideC~~~pC~ngg~C~n~~g~y~C~C~~Gf~G~~Ce~~i~deC~~~~~~C~~~C~n~~gsy~C~C~~Gy~l  112 (195)
T 1nfu_B           41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTL  112 (195)
T ss_dssp             ----------------------------------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEE
T ss_pred             CCcccCCCCCCCCCEeECCCCCeeEeCCCCceeccccccccccccCCCCCCCCEeECCCCCeEEECCCCcee
Confidence            7889998999999999999999999999999999997545 6786533333348999999999999999983

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=98.79  E-value=9.8e-09  Score=69.74  Aligned_cols=69  Identities=36%  Similarity=0.781  Sum_probs=53.4

Q ss_pred             ecCCCCCCCCCCCC-CEeeeCCCceeeecCCCcccCCCCccCCCCCC---CCCCCCCeeeeCCCceEEeCCCCcccC
Q psy6349           6 VSSPGLKREALCHN-GTCEDFGNSHRCHCMEGYTGSYCSIEINECES---DPCQNGATCQDLIGGYSCQCARGFQGQ   78 (145)
Q Consensus         6 ~~~~~~~~~~~c~~-~~c~~~~~~~~C~c~~g~~~~~c~~~~~~c~~---~~c~~~~~c~~~~~~~~c~c~~g~~g~   78 (145)
                      ++++|  ...+|.+ +.|.+..+.|.|.|.+||.|..|+.++++|..   .+|..  .|.+..++|.|.|..+|.+.
T Consensus         4 d~~~C--~~~pC~~~g~C~~~~~~~~C~C~~g~~g~~C~~~~~eC~~~~~~~C~~--~C~~~~g~~~C~C~~g~~~~   76 (317)
T 3h5c_B            4 GGSPC--ISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQESYTCSCAQGYRLG   76 (317)
T ss_dssp             --CCT--TSCCCTTTCCCCCCSSSCCCCCSSSCCSSSSCCCSSSCCTTCTTSCSS--EEECCSSSCEEECCTTEECC
T ss_pred             cCCcC--CCCCCCCCCEeECCCCCeEEECCCCCcCCccccCcccCCCCCCCCCcC--ccccCCCeeEEecccccccc
Confidence            34555  4567875 78988888889999999999999767888876   56765  88888888999999888764

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=98.76  E-value=3.5e-09  Score=60.80  Aligned_cols=80  Identities=30%  Similarity=0.734  Sum_probs=33.5

Q ss_pred             ecCCCcccCCCCccCCCCCCCCCCCCCeeeeCCCceEEeCCCCccc---CCccccCCCCcC-CCCCCCCEEeeCCCCeEe
Q psy6349          32 HCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQG---QNCELNVDDCKP-NPCQNGGICHDLINHFSC  107 (145)
Q Consensus        32 ~c~~g~~~~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g---~~c~~~~~~c~~-~~~~~~~~c~~~~~~~~C  107 (145)
                      ....+|.+..|  ++++|...+......|++..++|.|.|.+||.+   ..|. ++++|.. ..|.  +.|+++.++|.|
T Consensus        17 ~~~~~~~~~~C--d~neC~~~~~~C~~~C~n~~g~y~C~C~~Gy~g~~g~~C~-dideC~~~~~C~--~~C~n~~gsy~C   91 (107)
T 2w2n_E           17 TTENLYFQGAM--GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCS--QLCVNLEGGYKC   91 (107)
T ss_dssp             ---CCCCSCCB--SCCGGGTGGGGCSSEEECCSBSCEEECCTTCEEETTTEEE-C-------------------------
T ss_pred             ccCCCcCCCCC--cCccCcCCCCCCCCEeEeCCCCeEEECCCCccccCCCccc-cccccCCCCCcC--CeeecCCCCEEE
Confidence            35566777777  567886532222358988889999999999986   5675 6677752 3343  466666667777


Q ss_pred             eCCCCCccC
Q psy6349         108 SCPSGLKRE  116 (145)
Q Consensus       108 ~c~~g~~~~  116 (145)
                      .|++||.+.
T Consensus        92 ~C~~Gy~~~  100 (107)
T 2w2n_E           92 QCEEGFQLD  100 (107)
T ss_dssp             ---------
T ss_pred             ECCCCceEC
Confidence            777776653

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=98.74  E-value=2.4e-09  Score=63.94  Aligned_cols=72  Identities=26%  Similarity=0.593  Sum_probs=16.4

Q ss_pred             eeecCCCCCCCCCCCC-CEeeeCCCceeeecCCCcccCCCCccC-CCCCCCCCCCCCeeeeCCCceEEeCCCCccc
Q psy6349           4 LIVSSPGLKREALCHN-GTCEDFGNSHRCHCMEGYTGSYCSIEI-NECESDPCQNGATCQDLIGGYSCQCARGFQG   77 (145)
Q Consensus         4 ~~~~~~~~~~~~~c~~-~~c~~~~~~~~C~c~~g~~~~~c~~~~-~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g   77 (145)
                      +..++.|.  ..+|.+ +.|++..+.|.|.|.+||.|..|...+ ++|...+......|++..++|.|.|.+||.+
T Consensus        39 c~d~d~C~--~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~~i~d~C~~~~~~C~~~C~~~~g~y~C~C~~Gy~l  112 (134)
T 2vh0_B           39 YKDGDQCE--TSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTL  112 (134)
T ss_dssp             --------------------------------------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEE
T ss_pred             CCCcCcCC--CCCCCCcCCcccCCCCEEeeCCCCccCCccccCCCCccccCCCCCCCEeECCCCCEEEECCCCcEE
Confidence            34444443  345653 566666666666666666666665334 4565432212226666666666666666643

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=98.73  E-value=6.8e-12  Score=82.35  Aligned_cols=119  Identities=13%  Similarity=0.069  Sum_probs=81.4

Q ss_pred             eeeCCCceeeecCCC---cccCCCCccCCCCCCCCCCCCCeeeeCCCceEEeCCCCcccCCccccCCC------------
Q psy6349          22 CEDFGNSHRCHCMEG---YTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDD------------   86 (145)
Q Consensus        22 c~~~~~~~~C~c~~g---~~~~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~~~~~~------------   86 (145)
                      +++.-|.+.+.+.++   +.+.++...+..+. .++..++.|+....+|.|.|+.+|.|..|+..+++            
T Consensus         6 ~~n~~Gg~s~~~~pgg~~~~g~~~~~n~~~~~-~~c~ngG~C~~g~~~y~C~Cp~Gf~G~~Ce~ni~ec~~~~~c~s~pC   84 (267)
T 4fbr_A            6 VQNQWGGSQATWNPGGLWLIGARDKQNVVALD-IKSDDGGKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPW   84 (267)
T ss_dssp             EEEECSSTTSCCEEEEEEECCCCSSCCEEEEE-EECSSTTSEEEEEEEETTSCCEEEEEEECSTTEEEEEEESSSTTSCE
T ss_pred             EeecCCcccCCcCCCCceeeccccccccccCC-CCcCCCCeecCCCCCeEEeCCCCcccccccccccccccccCcCCCcc
Confidence            345555566666666   34555543333332 36778899999889999999999998777654443            


Q ss_pred             -----------------CcCCCCCCCCEEeeCCCCeEeeCCCCCccC---------------------------------
Q psy6349          87 -----------------CKPNPCQNGGICHDLINHFSCSCPSGLKRE---------------------------------  116 (145)
Q Consensus        87 -----------------c~~~~~~~~~~c~~~~~~~~C~c~~g~~~~---------------------------------  116 (145)
                                       |...+|...+.|++...+|.|.|++||+++                                 
T Consensus        85 ~nggtc~~G~~c~~~~eC~s~pC~ngG~C~~~~~sy~C~C~~Gf~G~~Ce~~~d~C~n~~~c~s~pC~ngg~c~~G~~c~  164 (267)
T 4fbr_A           85 QPGGVWVLGARDKQNIVAVSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTRGK  164 (267)
T ss_dssp             EEEEEEECCCCSSCCEEEEEEECSSTTSEEEEEEEETTSCCEEEEEEECCCCEEEEEEECSSTTSCCEEEEEEECCSSTT
T ss_pred             cCCCeeeccCccccccccCCCCCCCCCEEecCCccEEeeCCCCccccCCCCCcccccccCCcCCccccCCcceecccccc
Confidence                             223345666777776677888999888754                                 


Q ss_pred             -------CCCC-CCeeeeCCCceeEecCCCCCc
Q psy6349         117 -------ALCH-NGTCEDFGNSHRCHCICWDDL  141 (145)
Q Consensus       117 -------~~C~-~~~c~~~~g~~~c~c~~~~~~  141 (145)
                             .+|. +++|.+...+|+|.|++||+.
T Consensus       165 ~~i~c~~~~c~ngg~C~dg~~~y~C~Cp~Gf~G  197 (267)
T 4fbr_A          165 QNVINVDAKSNDGGKTLSGTMTYNGEGPIGFRG  197 (267)
T ss_dssp             SCEEEEEEECSSTTSEEEEEEEETTSCCEEEEE
T ss_pred             cccccCCCCCCCCCEeeCCCCCeEEeCCCCccc
Confidence                   1233 567777778888999988865

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=98.72  E-value=1.2e-08  Score=75.51  Aligned_cols=112  Identities=31%  Similarity=0.768  Sum_probs=77.6

Q ss_pred             CCCC-CCEeeeCCCceeeecCCCcccCCCCccCC---------CCCCC----CCCCCCeeeeCCCceEEeCC------CC
Q psy6349          15 ALCH-NGTCEDFGNSHRCHCMEGYTGSYCSIEIN---------ECESD----PCQNGATCQDLIGGYSCQCA------RG   74 (145)
Q Consensus        15 ~~c~-~~~c~~~~~~~~C~c~~g~~~~~c~~~~~---------~c~~~----~c~~~~~c~~~~~~~~c~c~------~g   74 (145)
                      ..|. +|.|..    ..|.|.+||.|..|+....         .|...    +|..++.|..  +  .|.|.      ++
T Consensus       435 ~~Cs~~G~C~~----g~C~C~~Gy~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~--G--~C~C~~~~~~~~G  506 (687)
T 3k6s_B          435 SLCHGKGFLEC----GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC--G--QCLCHTSDVPGKL  506 (687)
T ss_dssp             STGGGSEEESS----SSEEECSSEESTTSCEESSSCCCSGGGSTTSSSTTSCGGGSSEEEET--T--EEEECCCCSTTCC
T ss_pred             CCCCCCCEEeC----CEeEcCCCCcCCcccccCCcCCccccCCCCCCCCCCCcCCCCCEEeC--C--EEEcCCCCCCCCC
Confidence            4564 466652    3699999999999973332         46543    3777788872  2  79999      99


Q ss_pred             cccCCccccCCCCcC---CCCCC--CCEEeeCCCCeEeeCCCCCccC----------------CCCC-CCeeeeCCCcee
Q psy6349          75 FQGQNCELNVDDCKP---NPCQN--GGICHDLINHFSCSCPSGLKRE----------------ALCH-NGTCEDFGNSHR  132 (145)
Q Consensus        75 ~~g~~c~~~~~~c~~---~~~~~--~~~c~~~~~~~~C~c~~g~~~~----------------~~C~-~~~c~~~~g~~~  132 (145)
                      |.|..|+.+...|..   ..|..  ++.|...    .|.|.+||.+.                ..|. +|.|..    ++
T Consensus       507 ~~G~~Ce~~~~~C~~~~~~~C~~~~~G~C~~g----~C~C~~G~~G~~Cec~~~~~~C~~~~g~~Cs~~G~C~~----g~  578 (687)
T 3k6s_B          507 IYGQYCECDTINCERYNGQVCGGPGRGLCFCG----KCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC----NV  578 (687)
T ss_dssp             EESTTSCEESSCSCEETTEETSHHHHEEEETT----EEEECTTCCSTTSCSCCSSCTTBCTTCSBTSSSCCBCS----SC
T ss_pred             ccccccccccccccCCCCcCcCCCCCCeEECC----EEEcCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcCCC----CE
Confidence            999999755666753   24666  7788642    79999999875                0243 455654    36


Q ss_pred             EecCCCCCcC
Q psy6349         133 CHCICWDDLR  142 (145)
Q Consensus       133 c~c~~~~~~~  142 (145)
                      |.|++||.+.
T Consensus       579 C~C~~Gy~G~  588 (687)
T 3k6s_B          579 CECHSGYQLP  588 (687)
T ss_dssp             BCCSTTCCTT
T ss_pred             EECCCCCcCC
Confidence            9999999875

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=98.69  E-value=9.2e-09  Score=56.84  Aligned_cols=66  Identities=32%  Similarity=1.068  Sum_probs=50.6

Q ss_pred             cCCCCCCCC--CCCCCeeeeCCCceEEeCCCCcc----cCCccccCCCCcCCCCCCCCEEeeCCCCeEeeCC--CCCc
Q psy6349          45 EINECESDP--CQNGATCQDLIGGYSCQCARGFQ----GQNCELNVDDCKPNPCQNGGICHDLINHFSCSCP--SGLK  114 (145)
Q Consensus        45 ~~~~c~~~~--c~~~~~c~~~~~~~~c~c~~g~~----g~~c~~~~~~c~~~~~~~~~~c~~~~~~~~C~c~--~g~~  114 (145)
                      ++++|...+  | ..+.|.+..++|.|.|.+||.    +..|. ++++|...+|.  +.|+++.++|.|.|+  +||.
T Consensus         2 dideC~~~~~~C-~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~-dideC~~~~C~--~~C~n~~g~y~C~C~g~~G~~   75 (87)
T 1z6c_A            2 DVDECSLKPSIC-GTAVCKNIPGDFECECPEGYRYNLKSKSCE-DIDECSENMCA--QLCVNYPGGYTCYCDGKKGFK   75 (87)
T ss_dssp             CSCSSSSSSSSB-TTSSCCCBTTBCCCSSSTTCEEETTTTEEE-CCCHHHHSCCS--SEECCCSSSCCEECCSSSCCB
T ss_pred             ccccccCCCCCC-CCCEeECCCCCEEEECCCCceECCCCCcCC-CcCeeCCCCCC--CEEEccCCCEEEECCCCcCCc
Confidence            467787766  6 567899889999999999997    66775 77777666665  688888888888884  4554

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=98.59  E-value=1e-07  Score=64.74  Aligned_cols=70  Identities=39%  Similarity=0.992  Sum_probs=60.9

Q ss_pred             cCCCCCCCCCCCCCeeeeCCCceEEeCCCCcccCCccccCCCCcC---CCCCCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          45 EINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKP---NPCQNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        45 ~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~~~~~~c~~---~~~~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      ++++|...||.+++.|.+..+.|.|.|.+||.|..|..++++|..   ..|.+  .|++..++|.|.|++||.+.
T Consensus         4 d~~~C~~~pC~~~g~C~~~~~~~~C~C~~g~~g~~C~~~~~eC~~~~~~~C~~--~C~~~~g~~~C~C~~g~~~~   76 (317)
T 3h5c_B            4 GGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQESYTCSCAQGYRLG   76 (317)
T ss_dssp             --CCTTSCCCTTTCCCCCCSSSCCCCCSSSCCSSSSCCCSSSCCTTCTTSCSS--EEECCSSSCEEECCTTEECC
T ss_pred             cCCcCCCCCCCCCCEeECCCCCeEEECCCCCcCCccccCcccCCCCCCCCCcC--ccccCCCeeEEecccccccc
Confidence            567888899999999998889999999999999999778889976   56765  99999999999999999875

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=98.59  E-value=2.9e-07  Score=64.86  Aligned_cols=101  Identities=27%  Similarity=0.674  Sum_probs=58.3

Q ss_pred             eeecCCCcccCCCCccCCCCCCCCCCCCCeeeeCCCceEEeCCCCcccCCccccCC----------CCc-CCCCCCCCEE
Q psy6349          30 RCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVD----------DCK-PNPCQNGGIC   98 (145)
Q Consensus        30 ~C~c~~g~~~~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~~~~~----------~c~-~~~~~~~~~c   98 (145)
                      .|.|..+|.|..|.   ..|  .+|..++.|..  ..+.|.|.++|.|..|+....          .|. ...|...+.|
T Consensus       186 ~c~C~~g~~G~~C~---~~C--~~C~~~G~C~~--~~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~~~~~C~~~g~C  258 (423)
T 2gy5_A          186 VRRCEAQKWGPECN---HLC--TACMNNGVCHE--DTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFC  258 (423)
T ss_dssp             ECSSCTTEESTTSC---EEC--CCCCTTCEECT--TTCCEECCTTEESTTSCEECCTTEESTTSCEECCSTTTTTTCCEE
T ss_pred             CCcCCCCCCCCCCC---CCC--CCCCCCCEEEC--CCCcEeCCCCccCCCcccccCCCCCCCCcCccCCCCCCCCCCCEE
Confidence            35677777777764   123  25666777754  345688888887777753211          122 2334555556


Q ss_pred             eeCCCCeEeeCCCCCccC---C---------------CCC-CCeeeeCCCceeEecCCCCCcC
Q psy6349          99 HDLINHFSCSCPSGLKRE---A---------------LCH-NGTCEDFGNSHRCHCICWDDLR  142 (145)
Q Consensus        99 ~~~~~~~~C~c~~g~~~~---~---------------~C~-~~~c~~~~g~~~c~c~~~~~~~  142 (145)
                      .  .+.+.|.|.+||.+.   .               .|. ++.|.+..+   |.|++||.+.
T Consensus       259 ~--~~~~~C~C~~G~~G~~C~~~C~~G~~G~~C~~~C~C~ngg~C~~~~~---C~C~~G~~G~  316 (423)
T 2gy5_A          259 L--PDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQG---CLCSPGWQGL  316 (423)
T ss_dssp             E--TTTTEEECCBTCBSGGGCBCCCTTBCSBTTCCBCCCTTCCEEETTTE---EECCTTCBST
T ss_pred             C--CCCCeEEeCCCcccccccCccCCCCcCCcccccccCCCCCEecCCCc---eECCCCCcCC
Confidence            3  345577777777653   1               233 446665432   8888887653

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=98.53  E-value=2.3e-08  Score=57.31  Aligned_cols=69  Identities=35%  Similarity=0.833  Sum_probs=27.8

Q ss_pred             ecCCCCCCCCCCCCCEeeeCCCceeeecCCCccc---CCCCccCCCCCC-CCCCCCCeeeeCCCceEEeCCCCcccC
Q psy6349           6 VSSPGLKREALCHNGTCEDFGNSHRCHCMEGYTG---SYCSIEINECES-DPCQNGATCQDLIGGYSCQCARGFQGQ   78 (145)
Q Consensus         6 ~~~~~~~~~~~c~~~~c~~~~~~~~C~c~~g~~~---~~c~~~~~~c~~-~~c~~~~~c~~~~~~~~c~c~~g~~g~   78 (145)
                      .+++|......|. ..|++..++|.|.|.+||.+   ..|+ ++++|.. .+|.  +.|++..++|.|.|..+|.+.
T Consensus        28 d~neC~~~~~~C~-~~C~n~~g~y~C~C~~Gy~g~~g~~C~-dideC~~~~~C~--~~C~n~~gsy~C~C~~Gy~~~  100 (107)
T 2w2n_E           28 GTNECLDNNGGCS-YVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLD  100 (107)
T ss_dssp             SCCGGGTGGGGCS-SEEECCSBSCEEECCTTCEEETTTEEE-C----------------------------------
T ss_pred             cCccCcCCCCCCC-CEeEeCCCCeEEECCCCccccCCCccc-cccccCCCCCcC--CeeecCCCCEEEECCCCceEC
Confidence            3455544334453 48999999999999999997   7786 8899974 5674  689999999999999999743

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.49  E-value=1.8e-07  Score=46.77  Aligned_cols=44  Identities=27%  Similarity=0.587  Sum_probs=30.3

Q ss_pred             CCCCccCCCCCCCCCCCCCeee-----eCCCceEEeCCCCcccCCcccc
Q psy6349          40 SYCSIEINECESDPCQNGATCQ-----DLIGGYSCQCARGFQGQNCELN   83 (145)
Q Consensus        40 ~~c~~~~~~c~~~~c~~~~~c~-----~~~~~~~c~c~~g~~g~~c~~~   83 (145)
                      ..|+..+++|.+.||.+++.|.     ...+.|.|.|.++|.|..|+..
T Consensus         2 ~~c~~~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~~   50 (55)
T 3u7u_G            2 TSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNY   50 (55)
T ss_dssp             -CCEEECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSCEE
T ss_pred             CCCcccCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCcc
Confidence            4555567778888888888884     3456788888888888877643

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=98.48  E-value=7.7e-09  Score=63.72  Aligned_cols=94  Identities=23%  Similarity=0.569  Sum_probs=65.0

Q ss_pred             cCCCCCC-CCCCCCCeeeeCCCceEEeCCCCcc----cCCccccCCC--CcCC--CC--CCCCEEeeCCC----CeEeeC
Q psy6349          45 EINECES-DPCQNGATCQDLIGGYSCQCARGFQ----GQNCELNVDD--CKPN--PC--QNGGICHDLIN----HFSCSC  109 (145)
Q Consensus        45 ~~~~c~~-~~c~~~~~c~~~~~~~~c~c~~g~~----g~~c~~~~~~--c~~~--~~--~~~~~c~~~~~----~~~C~c  109 (145)
                      ++++|.. .||. .+.|++..++|.|.|.+||.    |..|. ++++  |...  .+  ...+.|++..+    .|.|.|
T Consensus         2 dideC~~~~~C~-~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~-d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~C   79 (162)
T 1uzk_A            2 DVNECLDPTTCI-SGNCVNTPGSYICDCPPDFELNPTRVGCV-DTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCC   79 (162)
T ss_dssp             CCCGGGSTTSSB-TSEEEEETTEEEEECCTTCEECTTSSBEE-CCCCEEEEEEC----------CEEEEEEEECHHHHHT
T ss_pred             ccccCCCCCCCC-CCEeECCCCCEEEeCCCCCeECCCCCccc-CCCCCcccCCCcccCCCCCCcccCCcCCcccCceeeC
Confidence            5678874 7785 67999999999999999997    67776 5554  5432  12  23567777655    688999


Q ss_pred             CCCCccCCCCCCCeeee-CCCceeEecCC--CCCcC
Q psy6349         110 PSGLKREALCHNGTCED-FGNSHRCHCIC--WDDLR  142 (145)
Q Consensus       110 ~~g~~~~~~C~~~~c~~-~~g~~~c~c~~--~~~~~  142 (145)
                      ++||.....|.  .|.+ ..++|+|.|++  ||++.
T Consensus        80 ~~G~~~~~~C~--~C~~~~~~~y~C~C~~g~G~~~~  113 (162)
T 1uzk_A           80 SLGKAWGTPCE--MCPAVNTSEYKILCPGGEGFRPN  113 (162)
T ss_dssp             TTCCEETTTTE--ECCCTTSHHHHHHCTTCTTEEEC
T ss_pred             CCCCCcCCCcc--cCCCCCCCCceeECCCCCCcccC
Confidence            99998655664  4543 45788899988  78765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.39  E-value=3.9e-07  Score=63.79  Aligned_cols=66  Identities=36%  Similarity=0.906  Sum_probs=50.5

Q ss_pred             CCCCCCCCCCCCEeeeCCCceeeecCCCcc---cCCCCccCCCCCC-CCCCCCCeeeeCCCceEEeCCCCcccC
Q psy6349           9 PGLKREALCHNGTCEDFGNSHRCHCMEGYT---GSYCSIEINECES-DPCQNGATCQDLIGGYSCQCARGFQGQ   78 (145)
Q Consensus         9 ~~~~~~~~c~~~~c~~~~~~~~C~c~~g~~---~~~c~~~~~~c~~-~~c~~~~~c~~~~~~~~c~c~~g~~g~   78 (145)
                      +|......|. +.|.+..++|.|.|.+||.   +..|+ ++++|.. .+|.  ..|.+..++|.|.|.++|.+.
T Consensus         2 eC~~~~~~c~-~~C~~~~~~y~C~C~~G~~~~~~~~C~-dideC~~~~~C~--~~C~n~~g~~~C~C~~g~~~~   71 (400)
T 3p5b_L            2 ECLDNNGGCS-HVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLD   71 (400)
T ss_dssp             CTTTTGGGCS-SEEEECSSSEEEECCTTEEECSSSCEE-ECCCCSTTSSCS--SCCBCCSSSCBCCCCTTCCCC
T ss_pred             cccCCCCCCC-CEeECCCCCeEEECCCCCCcCCCCccc-CchhhhccCCCC--CccCCCccceeeecccccccc
Confidence            4544444553 5899999899999999997   77785 7889973 5564  478888899999999998743

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.25  E-value=2.2e-06  Score=64.83  Aligned_cols=100  Identities=28%  Similarity=0.685  Sum_probs=60.8

Q ss_pred             CCCCCCEeeeCCC--ceeeecCCCcccCCCCccCCCCCCCCCCCCCeeeeCCCceEEeCCCCcc---cCCccccCCCCcC
Q psy6349          15 ALCHNGTCEDFGN--SHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ---GQNCELNVDDCKP   89 (145)
Q Consensus        15 ~~c~~~~c~~~~~--~~~C~c~~g~~~~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~---g~~c~~~~~~c~~   89 (145)
                      .+|.++.|++...  ...+.|..++.....+-.+++|..........|.+..++|.|.|..||.   +..|. ++++|..
T Consensus       279 ~~C~~G~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~~C~~~~~~C~~~C~~~~~~y~C~C~~Gy~l~~g~~C~-dideC~~  357 (791)
T 3m0c_C          279 FKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQD  357 (791)
T ss_dssp             CCCTTSCCCCSSCCSCSSCCSSSSCSCCCTTBSCCSTTTGGGGCSSEEEECSBSEEEECCTTCEEETTTEEE-CCCCCSS
T ss_pred             cccCCCcccccccccCCccccccccCccccccccccccccccCccccccCCCCCcccCCCCCCccCCCCccc-cCcccCC
Confidence            3454455554322  1123454443322111133445433222345888888999999999995   66775 7888862


Q ss_pred             CCCCCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          90 NPCQNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        90 ~~~~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                       .......|+++.++|.|.|.+||.+.
T Consensus       358 -~~~C~~~C~n~~gsy~C~C~~Gy~l~  383 (791)
T 3m0c_C          358 -PDTCSQLCVNLEGGYKCQCEEGFQLD  383 (791)
T ss_dssp             -SSSCTTTCCBCSSCBCCCCCSSEECC
T ss_pred             -CCCCCCeeecCCCCceeecCCCCEeC
Confidence             23334578899999999999999764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.22  E-value=3.5e-06  Score=63.00  Aligned_cols=99  Identities=29%  Similarity=0.757  Sum_probs=63.7

Q ss_pred             CCCCCCEeeeCCC--ceeeecCCCcccCCCCccCCCCCCCCCCCCCeeeeCCCceEEeCCCCcc---cCCccccCCCCc-
Q psy6349          15 ALCHNGTCEDFGN--SHRCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ---GQNCELNVDDCK-   88 (145)
Q Consensus        15 ~~c~~~~c~~~~~--~~~C~c~~g~~~~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~---g~~c~~~~~~c~-   88 (145)
                      ..|.++.|++...  .+.+.|..+........++++|..........|.+..++|.|.|..||.   +..|. ++++|. 
T Consensus       261 ~~C~~g~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~~~~~~~C~-dideC~~  339 (699)
T 1n7d_A          261 FKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQD  339 (699)
T ss_dssp             CCCTTSCCCCSSCCSCSSCCSSSSCSCCCSSCCCCCTTSSTTTSCTTCCCCTTCCCCCCCSSSCCCSSSCCC-CCCCCSS
T ss_pred             eecCCCcEeCCcccccccceecCcccccccccccccccccccCcCCCcccCCCCcEEeCCCCeEcCCCCccc-CccccCC
Confidence            4455556654321  1233455444332211145666544322345788888999999999997   66776 788886 


Q ss_pred             CCCCCCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          89 PNPCQNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        89 ~~~~~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      ...|  .+.|+++.++|.|.|++||.+.
T Consensus       340 ~~~C--~~~C~n~~g~y~C~C~~G~~~~  365 (699)
T 1n7d_A          340 PDTC--SQLCVNLEGGYKCQCEEGFQLD  365 (699)
T ss_dssp             SSSC--TTTCCBCSSCBCCCCCSSCBCC
T ss_pred             CCcc--ccccccCCCCeeeeeecccccC
Confidence            3444  3578999999999999999864

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.20  E-value=6e-06  Score=61.74  Aligned_cols=61  Identities=23%  Similarity=0.575  Sum_probs=43.5

Q ss_pred             CCCCcCCCCCCCCEEeeCCCCeEeeCCCCCccC--------CCCC-----CCeeeeCCCceeEecCCCCCcCCC
Q psy6349          84 VDDCKPNPCQNGGICHDLINHFSCSCPSGLKRE--------ALCH-----NGTCEDFGNSHRCHCICWDDLRNS  144 (145)
Q Consensus        84 ~~~c~~~~~~~~~~c~~~~~~~~C~c~~g~~~~--------~~C~-----~~~c~~~~g~~~c~c~~~~~~~~~  144 (145)
                      +++|........+.|.++.++|.|.|++||.+.        ..|.     ...|.++.|+|+|.|++||.+..+
T Consensus       294 ~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~~~~~~~C~dideC~~~~~C~~~C~n~~g~y~C~C~~G~~~~~~  367 (699)
T 1n7d_A          294 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPH  367 (699)
T ss_dssp             CCCTTSSTTTSCTTCCCCTTCCCCCCCSSSCCCSSSCCCCCCCCSSSSSCTTTCCBCSSCBCCCCCSSCBCCSS
T ss_pred             cccccccccCcCCCcccCCCCcEEeCCCCeEcCCCCcccCccccCCCCccccccccCCCCeeeeeecccccCCC
Confidence            345543322234578888899999999999841        1121     247899999999999999998653

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=98.19  E-value=7.8e-06  Score=57.64  Aligned_cols=94  Identities=31%  Similarity=0.868  Sum_probs=63.8

Q ss_pred             CCC-CCEeeeCCCceeeecCCCcccCCCCccCC----------CCC-CCCCCCCCeeeeCCCceEEeCCCCcccCCcccc
Q psy6349          16 LCH-NGTCEDFGNSHRCHCMEGYTGSYCSIEIN----------ECE-SDPCQNGATCQDLIGGYSCQCARGFQGQNCELN   83 (145)
Q Consensus        16 ~c~-~~~c~~~~~~~~C~c~~g~~~~~c~~~~~----------~c~-~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~~~   83 (145)
                      +|. ++.|.+  +.+.|.|.+||.|..|+....          .|. ..+|...+.|.  .+.+.|.|.++|.|..|...
T Consensus       204 ~C~~~G~C~~--~~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~~~~~C~~~g~C~--~~~~~C~C~~G~~G~~C~~~  279 (423)
T 2gy5_A          204 ACMNNGVCHE--DTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCL--PDPYGCSCATGWKGLQCNEA  279 (423)
T ss_dssp             CCCTTCEECT--TTCCEECCTTEESTTSCEECCTTEESTTSCEECCSTTTTTTCCEEE--TTTTEEECCBTCBSGGGCBC
T ss_pred             CCCCCCEEEC--CCCcEeCCCCccCCCcccccCCCCCCCCcCccCCCCCCCCCCCEEC--CCCCeEEeCCCcccccccCc
Confidence            676 478986  346899999999999963211          232 23455566674  45788999999999888631


Q ss_pred             C------CCCc-CCCCCCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          84 V------DDCK-PNPCQNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        84 ~------~~c~-~~~~~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      -      ..|. .-.|.+++.|.+..   .|.|.+||.+.
T Consensus       280 C~~G~~G~~C~~~C~C~ngg~C~~~~---~C~C~~G~~G~  316 (423)
T 2gy5_A          280 CHPGFYGPDCKLRCSCNNGEMCDRFQ---GCLCSPGWQGL  316 (423)
T ss_dssp             CCTTBCSBTTCCBCCCTTCCEEETTT---EEECCTTCBST
T ss_pred             cCCCCcCCcccccccCCCCCEecCCC---ceECCCCCcCC
Confidence            1      1222 11467778887654   49999999985

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.17  E-value=2.7e-06  Score=59.54  Aligned_cols=67  Identities=34%  Similarity=0.928  Sum_probs=55.1

Q ss_pred             CCCCCCCCCCCCeeeeCCCceEEeCCCCcc---cCCccccCCCCcC-CCCCCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          47 NECESDPCQNGATCQDLIGGYSCQCARGFQ---GQNCELNVDDCKP-NPCQNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        47 ~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~---g~~c~~~~~~c~~-~~~~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      ++|...++...+.|.+..++|.|.|.+||.   +..|. ++++|.. ..|.  ..|.++.++|.|.|.+||.+.
T Consensus         1 ~eC~~~~~~c~~~C~~~~~~y~C~C~~G~~~~~~~~C~-dideC~~~~~C~--~~C~n~~g~~~C~C~~g~~~~   71 (400)
T 3p5b_L            1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLD   71 (400)
T ss_dssp             CCTTTTGGGCSSEEEECSSSEEEECCTTEEECSSSCEE-ECCCCSTTSSCS--SCCBCCSSSCBCCCCTTCCCC
T ss_pred             CcccCCCCCCCCEeECCCCCeEEECCCCCCcCCCCccc-CchhhhccCCCC--CccCCCccceeeecccccccc
Confidence            356666666678999999999999999997   78896 8899963 4454  489999999999999999864

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.15  E-value=5.4e-07  Score=62.76  Aligned_cols=67  Identities=25%  Similarity=0.740  Sum_probs=13.3

Q ss_pred             ecCCCCCCCCCCCCCEeeeCCCceeeecCCCcc----cCCCCccCCCCC-CCCCCCCCeeeeCCCceEEeCCCCcc
Q psy6349           6 VSSPGLKREALCHNGTCEDFGNSHRCHCMEGYT----GSYCSIEINECE-SDPCQNGATCQDLIGGYSCQCARGFQ   76 (145)
Q Consensus         6 ~~~~~~~~~~~c~~~~c~~~~~~~~C~c~~g~~----~~~c~~~~~~c~-~~~c~~~~~c~~~~~~~~c~c~~g~~   76 (145)
                      .+++|......|.+ .|.+..++|.|.|.+||.    +..|+ ++++|. ..+|..  .|.+..++|.|.|.++|.
T Consensus         2 ~~~~C~~~~~~c~~-~C~~~~g~~~C~C~~G~~l~~~~~~C~-d~~eC~~~~~C~~--~C~~~~g~~~C~C~~g~~   73 (386)
T 3v65_B            2 GEENCNVNNGGCAQ-KCQMIRGAVQCTCHTGYRLTEDGRTCQ-DVNECAEEGYCSQ--GCTNSEGAFQCWCEAGYE   73 (386)
T ss_dssp             ----------------------------------------------------CCTT--EEC-----CCEECCTTEE
T ss_pred             CcCcccCCCCCCCC-CCcCCCCCcEeECCCCceECCCCCccC-ccceeCCcCcccC--cCCCCCCCCeEEECCCce
Confidence            35666655556753 788777888999999997    77884 788886 456653  488888889999999886

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.15  E-value=4.7e-06  Score=38.56  Aligned_cols=31  Identities=52%  Similarity=1.271  Sum_probs=12.7

Q ss_pred             CCCCCCCCCCCeeeeCCCceEEeCCCCcccC
Q psy6349          48 ECESDPCQNGATCQDLIGGYSCQCARGFQGQ   78 (145)
Q Consensus        48 ~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~   78 (145)
                      +|...||.+++.|++..++|.|.|..+|.|.
T Consensus         5 ~C~~~pC~ngg~C~~~~~~~~C~C~~G~~G~   35 (39)
T 1edm_B            5 QCESNPCLNGGSCKDDINSYECWCPFGFEGK   35 (39)
T ss_dssp             TTTTCCCCTTCEEEEETTEEEEECCTTCCST
T ss_pred             cCCCCCCCCCCEeEcCCCceEeECCCCCcCC
Confidence            3333344444444433344444444444433

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.09  E-value=7.3e-07  Score=62.10  Aligned_cols=67  Identities=25%  Similarity=0.744  Sum_probs=13.8

Q ss_pred             cCCCCCCCCCCCCCeeeeCCCceEEeCCCCcc----cCCccccCCCCc-CCCCCCCCEEeeCCCCeEeeCCCCCc
Q psy6349          45 EINECESDPCQNGATCQDLIGGYSCQCARGFQ----GQNCELNVDDCK-PNPCQNGGICHDLINHFSCSCPSGLK  114 (145)
Q Consensus        45 ~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~----g~~c~~~~~~c~-~~~~~~~~~c~~~~~~~~C~c~~g~~  114 (145)
                      ++++|...++.....|.+..++|.|.|.+||.    +..|. ++++|. ...|.  ..|+++.++|.|.|.+||.
T Consensus         2 ~~~~C~~~~~~c~~~C~~~~g~~~C~C~~G~~l~~~~~~C~-d~~eC~~~~~C~--~~C~~~~g~~~C~C~~g~~   73 (386)
T 3v65_B            2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQ-DVNECAEEGYCS--QGCTNSEGAFQCWCEAGYE   73 (386)
T ss_dssp             ---------------------------------------------------CCT--TEEC-----CCEECCTTEE
T ss_pred             CcCcccCCCCCCCCCCcCCCCCcEeECCCCceECCCCCccC-ccceeCCcCccc--CcCCCCCCCCeEEECCCce
Confidence            45778776655566888778889999999997    78884 888886 45565  3599999999999999997

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=97.97  E-value=6.4e-06  Score=52.92  Aligned_cols=90  Identities=31%  Similarity=0.735  Sum_probs=57.2

Q ss_pred             CCCC-CCEeeeCCCceeeecCCCcccCCCCccCC---------CCC----CCCCCCCCeeeeCCCceEEeCCCC------
Q psy6349          15 ALCH-NGTCEDFGNSHRCHCMEGYTGSYCSIEIN---------ECE----SDPCQNGATCQDLIGGYSCQCARG------   74 (145)
Q Consensus        15 ~~c~-~~~c~~~~~~~~C~c~~g~~~~~c~~~~~---------~c~----~~~c~~~~~c~~~~~~~~c~c~~g------   74 (145)
                      ..|. +|.|..    ..|.|.+||.|..|+....         .|.    ..+|..++.|+.    ..|.|..+      
T Consensus        96 ~~Csg~G~C~~----g~C~C~~G~~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Csg~G~C~~----g~C~C~~gw~~~~~  167 (217)
T 2p28_B           96 SLCHGKGFLEC----GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC----GQCLCHTSDVPGKL  167 (217)
T ss_dssp             CTTTTSEEEET----TEEEECTTEESTTSCEECCCCC-GGGGGGGBSSTTSCBGGGTEEEET----TEEEECCCCSTTCC
T ss_pred             CccCCCceEEC----CEEECCCCccCCcccccCcccccccCCCcCCCCCCCCCCCCCCEEeC----CceECCCCCCCccc
Confidence            3565 477763    3799999999999864322         243    235666677762    26889888      


Q ss_pred             cccCCccccCCCCcCC---CCCCC--CEEeeCCCCeEeeCCCCCccC
Q psy6349          75 FQGQNCELNVDDCKPN---PCQNG--GICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        75 ~~g~~c~~~~~~c~~~---~~~~~--~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      |.|..|+.+...|...   .|..+  +.|...    .|.|.+||.+.
T Consensus       168 ~~G~~Ce~~~~~C~~~~g~~C~~~~~G~C~~g----~C~C~~G~~G~  210 (217)
T 2p28_B          168 IYGQYCECDTINCERYNGQVCGGPGRGLCFCG----KCRCHPGFEGS  210 (217)
T ss_dssp             EESTTSCEESSCSCEETTEETTCTTTEEEETT----EEEECTTEEST
T ss_pred             EECCCcccCCccCCCCCCCCCCCCCCcEEeCC----eeECCCCCccC
Confidence            5788886444555432   35554  666532    67777777664

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=97.90  E-value=1.5e-05  Score=39.79  Aligned_cols=43  Identities=23%  Similarity=0.645  Sum_probs=32.4

Q ss_pred             cCCccccCCCCcCCCCCCCCEEe-----eCCCCeEeeCCCCCccCCCCC
Q psy6349          77 GQNCELNVDDCKPNPCQNGGICH-----DLINHFSCSCPSGLKREALCH  120 (145)
Q Consensus        77 g~~c~~~~~~c~~~~~~~~~~c~-----~~~~~~~C~c~~g~~~~~~C~  120 (145)
                      |..|...+++|...+|.+++.|.     +....|.|.|++||.+. .|.
T Consensus         1 G~~c~~~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~-~CE   48 (55)
T 3u7u_G            1 GTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGD-RCQ   48 (55)
T ss_dssp             --CCEEECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEEST-TSC
T ss_pred             CCCCcccCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCC-CcC
Confidence            34566678899999999999994     44568999999999986 453

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=97.80  E-value=1.4e-05  Score=59.37  Aligned_cols=89  Identities=29%  Similarity=0.774  Sum_probs=65.7

Q ss_pred             CCC-CCEeeeCCCceeeecC------CCcccCCCCccCCCCCC---CCCCC--CCeeeeCCCceEEeCCCCcccCCccc-
Q psy6349          16 LCH-NGTCEDFGNSHRCHCM------EGYTGSYCSIEINECES---DPCQN--GATCQDLIGGYSCQCARGFQGQNCEL-   82 (145)
Q Consensus        16 ~c~-~~~c~~~~~~~~C~c~------~g~~~~~c~~~~~~c~~---~~c~~--~~~c~~~~~~~~c~c~~g~~g~~c~~-   82 (145)
                      +|. +|.|..  +  .|.|.      +||.|..|+.+...|..   .+|..  ++.|..    ..|.|.+||.|..|.. 
T Consensus       483 ~Cs~~G~C~~--G--~C~C~~~~~~~~G~~G~~Ce~~~~~C~~~~~~~C~~~~~G~C~~----g~C~C~~G~~G~~Cec~  554 (687)
T 3k6s_B          483 ICSGLGDCVC--G--QCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC----GKCRCHPGFEGSACQCE  554 (687)
T ss_dssp             GGGSSEEEET--T--EEEECCCCSTTCCEESTTSCEESSCSCEETTEETSHHHHEEEET----TEEEECTTCCSTTSCSC
T ss_pred             cCCCCCEEeC--C--EEEcCCCCCCCCCccccccccccccccCCCCcCcCCCCCCeEEC----CEEEcCCCCcCCCCccC
Confidence            475 478873  2  79999      99999999755677763   35766  677863    2799999999999862 


Q ss_pred             -cCCCCcCC---CCCCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          83 -NVDDCKPN---PCQNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        83 -~~~~c~~~---~~~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                       ....|...   .|..++.|..    ..|.|.+||.+.
T Consensus       555 ~~~~~C~~~~g~~Cs~~G~C~~----g~C~C~~Gy~G~  588 (687)
T 3k6s_B          555 RTTEGCLNPRRVECSGRGRCRC----NVCECHSGYQLP  588 (687)
T ss_dssp             CSSCTTBCTTCSBTSSSCCBCS----SCBCCSTTCCTT
T ss_pred             CCCCCCCCCCCCCCCCCCcCCC----CEEECCCCCcCC
Confidence             24566543   5777788865    279999999986

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=97.77  E-value=4.1e-05  Score=35.25  Aligned_cols=33  Identities=48%  Similarity=1.131  Sum_probs=24.0

Q ss_pred             CCCCcCCCCCCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          84 VDDCKPNPCQNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        84 ~~~c~~~~~~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      +++|...+|.+++.|++..++|.|.|++||.+.
T Consensus         3 ~d~C~~~pC~ngg~C~~~~~~~~C~C~~G~~G~   35 (39)
T 1edm_B            3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEGK   35 (39)
T ss_dssp             CCTTTTCCCCTTCEEEEETTEEEEECCTTCCST
T ss_pred             cccCCCCCCCCCCEeEcCCCceEeECCCCCcCC
Confidence            456666677777788777777888888887764

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=97.76  E-value=6.2e-05  Score=37.22  Aligned_cols=27  Identities=41%  Similarity=1.021  Sum_probs=12.5

Q ss_pred             CCCC-CEee--eCCCceeeecCCCcccCCC
Q psy6349          16 LCHN-GTCE--DFGNSHRCHCMEGYTGSYC   42 (145)
Q Consensus        16 ~c~~-~~c~--~~~~~~~C~c~~g~~~~~c   42 (145)
                      +|.| +.|+  +..+.|.|.|.+||+|..|
T Consensus        13 pC~ngg~C~~~~~~~~~~C~C~~G~~G~~C   42 (53)
T 1egf_A           13 YCLNGGVCMHIESLDSYTCNCVIGYSGDRC   42 (53)
T ss_dssp             SSCSSCEEEEESSSSCEEEECCTTCCSSSS
T ss_pred             cCCCCcEEEeeCCCCCEEEECCCCCcCCcC
Confidence            4443 3444  3344444555555544444

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=97.76  E-value=4e-05  Score=36.56  Aligned_cols=29  Identities=34%  Similarity=0.812  Sum_probs=21.1

Q ss_pred             CCCC-CEee--eCCCceeeecCCCcccCCCCc
Q psy6349          16 LCHN-GTCE--DFGNSHRCHCMEGYTGSYCSI   44 (145)
Q Consensus        16 ~c~~-~~c~--~~~~~~~C~c~~g~~~~~c~~   44 (145)
                      +|.| +.|.  +..+.|.|.|.+||.|..|+.
T Consensus        10 pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~   41 (45)
T 1a3p_A           10 YCLNGGVXMHIESLDSYTCNCVIGYSGDRCQT   41 (45)
T ss_dssp             CCSSSCEEEECTTTSSEEEECCTTEETTTTCE
T ss_pred             CCCCCCEEEeecCCCCEEEEcCCCCcCCcCCc
Confidence            6765 6786  455678888888888887753

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=97.72  E-value=0.00011  Score=36.27  Aligned_cols=34  Identities=29%  Similarity=0.861  Sum_probs=28.5

Q ss_pred             CCCCCCCeee--eCCCceEEeCCCCcccCCccccCC
Q psy6349          52 DPCQNGATCQ--DLIGGYSCQCARGFQGQNCELNVD   85 (145)
Q Consensus        52 ~~c~~~~~c~--~~~~~~~c~c~~g~~g~~c~~~~~   85 (145)
                      .||.+++.|+  ...+.|.|.|..+|.|..|+..+.
T Consensus        12 ~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~~~   47 (53)
T 1egf_A           12 GYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRDL   47 (53)
T ss_dssp             CSSCSSCEEEEESSSSCEEEECCTTCCSSSSCCCSC
T ss_pred             CcCCCCcEEEeeCCCCCEEEECCCCCcCCcCCccCc
Confidence            3788889998  678899999999999999975443

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=97.71  E-value=7.4e-05  Score=35.60  Aligned_cols=31  Identities=29%  Similarity=0.892  Sum_probs=23.4

Q ss_pred             CCCCCCeee--eCCCceEEeCCCCcccCCcccc
Q psy6349          53 PCQNGATCQ--DLIGGYSCQCARGFQGQNCELN   83 (145)
Q Consensus        53 ~c~~~~~c~--~~~~~~~c~c~~g~~g~~c~~~   83 (145)
                      ||.+++.|.  ...+.|.|.|..+|.|..|+.+
T Consensus        10 pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~   42 (45)
T 1a3p_A           10 YCLNGGVXMHIESLDSYTCNCVIGYSGDRCQTR   42 (45)
T ss_dssp             CCSSSCEEEECTTTSSEEEECCTTEETTTTCEE
T ss_pred             CCCCCCEEEeecCCCCEEEEcCCCCcCCcCCcc
Confidence            777778886  4567788888888888877643

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=97.63  E-value=0.00011  Score=37.73  Aligned_cols=38  Identities=26%  Similarity=0.605  Sum_probs=29.0

Q ss_pred             CCCCCC-CEeee-----CCCceeeecCCCcccCCCCccCCCCCC
Q psy6349          14 EALCHN-GTCED-----FGNSHRCHCMEGYTGSYCSIEINECES   51 (145)
Q Consensus        14 ~~~c~~-~~c~~-----~~~~~~C~c~~g~~~~~c~~~~~~c~~   51 (145)
                      ..+|.| |.|++     ..+.|.|.|.+||.|..|+.+++.+..
T Consensus        11 ~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~~i~~~~~   54 (63)
T 1hae_A           11 KTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQ   54 (63)
T ss_dssp             HTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCSSCT
T ss_pred             CCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccCcCcCcccc
Confidence            456875 78986     456789999999999999766666543

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=97.60  E-value=4.3e-05  Score=39.24  Aligned_cols=42  Identities=36%  Similarity=0.619  Sum_probs=33.7

Q ss_pred             CCCCCCCCCCCCeeee-----CCCceEEeCCCCcccCCccccCCCCc
Q psy6349          47 NECESDPCQNGATCQD-----LIGGYSCQCARGFQGQNCELNVDDCK   88 (145)
Q Consensus        47 ~~c~~~~c~~~~~c~~-----~~~~~~c~c~~g~~g~~c~~~~~~c~   88 (145)
                      ++|.+.||.+++.|..     ..+.|.|.|..||.|..|+.+++++.
T Consensus         7 ~~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~~i~~~~   53 (63)
T 1hae_A            7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKV   53 (63)
T ss_dssp             CHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCSSC
T ss_pred             CCCCCCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccCcCcCccc
Confidence            4566778988899986     56789999999999999976666554

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=97.54  E-value=2.1e-05  Score=40.07  Aligned_cols=36  Identities=31%  Similarity=0.879  Sum_probs=22.5

Q ss_pred             CCCCCCCCCCCC--CeeeeCCCceEEeCCCCcc-cCCcc
Q psy6349          46 INECESDPCQNG--ATCQDLIGGYSCQCARGFQ-GQNCE   81 (145)
Q Consensus        46 ~~~c~~~~c~~~--~~c~~~~~~~~c~c~~g~~-g~~c~   81 (145)
                      +++|.+.||.++  +.|.+..++|.|.|.+||. |..|.
T Consensus        11 ~d~C~snPC~nga~gtC~~~~g~y~C~C~~Gy~~G~~C~   49 (61)
T 2k2s_B           11 PAACSSNPCGPEAAGTCKETNSGYICRCNQGYRISLDGT   49 (61)
T ss_dssp             CCHHHHCSSCSSSCCEEEECSSEEEEECCTTEEEEECSS
T ss_pred             CCcCcCCCCcCCCccccccCCCceEeECCCCCccCCCCC
Confidence            455655666655  5666666666666666666 66553

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.53  E-value=8.2e-05  Score=56.45  Aligned_cols=54  Identities=39%  Similarity=0.989  Sum_probs=45.0

Q ss_pred             EeeeCCCceeeecCCCcc---cCCCCccCCCCCCCCCCCCCeeeeCCCceEEeCCCCcc
Q psy6349          21 TCEDFGNSHRCHCMEGYT---GSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQ   76 (145)
Q Consensus        21 ~c~~~~~~~~C~c~~g~~---~~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~   76 (145)
                      .|.+..++|.|.|.+||.   +..|+ ++++|.. +......|.+..++|.|.|.+||.
T Consensus       325 ~C~~~~~~y~C~C~~Gy~l~~g~~C~-dideC~~-~~~C~~~C~n~~gsy~C~C~~Gy~  381 (791)
T 3m0c_C          325 VCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQ  381 (791)
T ss_dssp             EEEECSBSEEEECCTTCEEETTTEEE-CCCCCSS-SSSCTTTCCBCSSCBCCCCCSSEE
T ss_pred             cccCCCCCcccCCCCCCccCCCCccc-cCcccCC-CCCCCCeeecCCCCceeecCCCCE
Confidence            899999999999999996   77785 7899962 333345899999999999999996

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=97.50  E-value=0.00014  Score=34.79  Aligned_cols=29  Identities=34%  Similarity=0.864  Sum_probs=23.1

Q ss_pred             CCCCCCEeeeCC--CceeeecCCCcccCCCC
Q psy6349          15 ALCHNGTCEDFG--NSHRCHCMEGYTGSYCS   43 (145)
Q Consensus        15 ~~c~~~~c~~~~--~~~~C~c~~g~~~~~c~   43 (145)
                      .+|.||.|....  +.|.|.|.+||+|..|+
T Consensus        12 ~pC~nG~C~~~~~~~~~~C~C~~GytG~~Ce   42 (46)
T 1k36_A           12 GYCLHGQCIYLVDMSQNYCRCEVGYTGVRCE   42 (46)
T ss_dssp             SSCSSEEEEEETTTTEEEEEECTTCSSTTSC
T ss_pred             CCCCCCEeeccCCCCCEEEECCCCCccCCCC
Confidence            578778888643  57889999999998885

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=97.40  E-value=0.00011  Score=37.46  Aligned_cols=44  Identities=27%  Similarity=0.588  Sum_probs=33.0

Q ss_pred             cCCCCcCCCCCCC--CEEeeCCCCeEeeCCCCCc-cCCCCC-CCeeeeC
Q psy6349          83 NVDDCKPNPCQNG--GICHDLINHFSCSCPSGLK-REALCH-NGTCEDF  127 (145)
Q Consensus        83 ~~~~c~~~~~~~~--~~c~~~~~~~~C~c~~g~~-~~~~C~-~~~c~~~  127 (145)
                      .+++|...+|.++  +.|++..++|.|.|++||. +. .|. .-.|.+.
T Consensus        10 ~~d~C~snPC~nga~gtC~~~~g~y~C~C~~Gy~~G~-~C~~~~~C~~~   57 (61)
T 2k2s_B           10 TPAACSSNPCGPEAAGTCKETNSGYICRCNQGYRISL-DGTGNVTCIVR   57 (61)
T ss_dssp             SCCHHHHCSSCSSSCCEEEECSSEEEEECCTTEEEEE-CSSSCEEEEES
T ss_pred             CCCcCcCCCCcCCCccccccCCCceEeECCCCCccCC-CCCCCCEeccc
Confidence            3456766778887  7999999999999999999 75 464 3345544

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.35  E-value=5.7e-05  Score=53.92  Aligned_cols=77  Identities=27%  Similarity=0.742  Sum_probs=34.9

Q ss_pred             eeecCCCcccCCCCccCCCCCCCCCCCCCeeeeCCCceEEeCCCCcccCCccccCCCCcCCCCCCCCEEeeCCCCeEeeC
Q psy6349          30 RCHCMEGYTGSYCSIEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSC  109 (145)
Q Consensus        30 ~C~c~~g~~~~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~~~~~~c~~~~~~~~~~c~~~~~~~~C~c  109 (145)
                      ...|..+|.+..|.  .+.|.. +|.+ +.|...   ..|.|.++|.|..|.  ...|.. .|.+++.|+..   +.|.|
T Consensus       378 p~~C~~~~~g~~c~--~~~C~~-~C~n-G~C~~~---~~C~C~~G~~G~~C~--~~~C~~-~C~~~g~C~~~---~~C~C  444 (463)
T 2wg3_C          378 PEECRATVQPAQTL--TSECSR-LCRN-GYCTPT---GKCCCSPGWEGDFCR--TAKCEP-ACRHGGVCVRP---NKCLC  444 (463)
T ss_dssp             CGGGCCCCCCCCCC--CCHHHH-HCCS-EEECTT---SCEEECTTEESTTSC--EECC----------------------
T ss_pred             cccCCCCCcCCCCc--cccccC-CCCC-CccCCC---CeECCCCCcCCCcCC--cCcCCC-CCCCCCEECCC---CEEEC
Confidence            45788888888774  456654 4765 678643   379999999999995  346765 78888899865   38999


Q ss_pred             CCCCccCCCCC
Q psy6349         110 PSGLKREALCH  120 (145)
Q Consensus       110 ~~g~~~~~~C~  120 (145)
                      .+||.+. .|.
T Consensus       445 ~~G~~G~-~C~  454 (463)
T 2wg3_C          445 KKGYLGP-QCE  454 (463)
T ss_dssp             -----------
T ss_pred             CCCcccC-CCC
Confidence            9999885 454

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=97.24  E-value=0.00027  Score=34.89  Aligned_cols=31  Identities=29%  Similarity=0.852  Sum_probs=23.0

Q ss_pred             CCCCCC-CEee--eCCCceeeecCCCcccCCCCc
Q psy6349          14 EALCHN-GTCE--DFGNSHRCHCMEGYTGSYCSI   44 (145)
Q Consensus        14 ~~~c~~-~~c~--~~~~~~~C~c~~g~~~~~c~~   44 (145)
                      ..+|.| |.|.  +..+.|.|.|.+||+|..|+.
T Consensus        11 ~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~   44 (53)
T 1nql_B           11 DGYCLHDGVCMYIEALDKYACNCVVGYIGERCQY   44 (53)
T ss_dssp             CCEECTTCEEEEETTTTEEEEEECTTEESTTSCE
T ss_pred             CCCCCCCeEEeeecCCCCEEEecCCCCcCCCCCc
Confidence            456765 6887  455678888888888888864

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=97.20  E-value=0.00034  Score=33.42  Aligned_cols=35  Identities=34%  Similarity=0.884  Sum_probs=24.5

Q ss_pred             CCCCCC---CCCCCCCeeeeCC--CceEEeCCCCcccCCcc
Q psy6349          46 INECES---DPCQNGATCQDLI--GGYSCQCARGFQGQNCE   81 (145)
Q Consensus        46 ~~~c~~---~~c~~~~~c~~~~--~~~~c~c~~g~~g~~c~   81 (145)
                      +++|.+   .||.+ +.|....  +.|.|.|.+||.|..|+
T Consensus         3 i~~C~~~~~~pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce   42 (46)
T 1k36_A            3 ITKCSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCE   42 (46)
T ss_dssp             EECCCTTCCSSCSS-EEEEEETTTTEEEEEECTTCSSTTSC
T ss_pred             cccCCCCCCCCCCC-CEeeccCCCCCEEEECCCCCccCCCC
Confidence            455655   67777 6776533  57888888888888775

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=97.11  E-value=0.00043  Score=34.40  Aligned_cols=39  Identities=28%  Similarity=0.521  Sum_probs=25.4

Q ss_pred             CCCCCCCCCCCCEeeeCCCceeeecCCCcc----cCCCCccCCCC
Q psy6349           9 PGLKREALCHNGTCEDFGNSHRCHCMEGYT----GSYCSIEINEC   49 (145)
Q Consensus         9 ~~~~~~~~c~~~~c~~~~~~~~C~c~~g~~----~~~c~~~~~~c   49 (145)
                      +|......|. ..|++..|+|.|.|.+||.    +..|. ++++|
T Consensus         3 EC~~~~~~C~-~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~-didec   45 (55)
T 2jkh_L            3 LCSLDNGDCD-QFCHEEQNSVVCSCARGYTLADNGKACI-PTGPY   45 (55)
T ss_dssp             CTTTGGGGCS-SEEEEETTEEEEECCTTEEECTTSSCEE-ESSSS
T ss_pred             cccCCCCCcC-cEeEcCCCCeEEeCCCCCEECCCCCeec-cCccc
Confidence            3443445564 3788888888899988886    44553 45554

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.08  E-value=8.6e-05  Score=53.02  Aligned_cols=64  Identities=23%  Similarity=0.548  Sum_probs=24.4

Q ss_pred             EeCCCCcccCCccccCCCCcCCCCCCCCEEeeCCCCeEeeCCCCCccC--------CCCC-CCeeeeCCCceeEecCCCC
Q psy6349          69 CQCARGFQGQNCELNVDDCKPNPCQNGGICHDLINHFSCSCPSGLKRE--------ALCH-NGTCEDFGNSHRCHCICWD  139 (145)
Q Consensus        69 c~c~~g~~g~~c~~~~~~c~~~~~~~~~~c~~~~~~~~C~c~~g~~~~--------~~C~-~~~c~~~~g~~~c~c~~~~  139 (145)
                      ..|..+|.+..|.  ...|.. .|.+ +.|+..   ..|.|.+||.+.        ..|. ++.|.+.   ++|.|++||
T Consensus       379 ~~C~~~~~g~~c~--~~~C~~-~C~n-G~C~~~---~~C~C~~G~~G~~C~~~~C~~~C~~~g~C~~~---~~C~C~~G~  448 (463)
T 2wg3_C          379 EECRATVQPAQTL--TSECSR-LCRN-GYCTPT---GKCCCSPGWEGDFCRTAKCEPACRHGGVCVRP---NKCLCKKGY  448 (463)
T ss_dssp             GGGCCCCCCCCCC--CCHHHH-HCCS-EEECTT---SCEEECTTEESTTSCEECC-------------------------
T ss_pred             ccCCCCCcCCCCc--cccccC-CCCC-CccCCC---CeECCCCCcCCCcCCcCcCCCCCCCCCEECCC---CEEECCCCc
Confidence            3466666666653  234443 3554 677543   368888888875        1333 3566654   478888888


Q ss_pred             CcC
Q psy6349         140 DLR  142 (145)
Q Consensus       140 ~~~  142 (145)
                      ++.
T Consensus       449 ~G~  451 (463)
T 2wg3_C          449 LGP  451 (463)
T ss_dssp             ---
T ss_pred             ccC
Confidence            754

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=96.82  E-value=0.00019  Score=35.29  Aligned_cols=29  Identities=52%  Similarity=1.003  Sum_probs=14.7

Q ss_pred             CCCCCCeeee----CCCceEEeCCCCcccCCcc
Q psy6349          53 PCQNGATCQD----LIGGYSCQCARGFQGQNCE   81 (145)
Q Consensus        53 ~c~~~~~c~~----~~~~~~c~c~~g~~g~~c~   81 (145)
                      ||.+++.|+.    ..+.|.|.|..+|.|..|+
T Consensus        15 pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce   47 (52)
T 3ca7_A           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE   47 (52)
T ss_dssp             TSCTTCEEEEEEETTEEEEEEECCTTEESTTSC
T ss_pred             cCCCCCEEecCccCCCCCEEEECCCCCcCCCCc
Confidence            3444555543    1234556666666555554

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=96.80  E-value=0.00048  Score=34.22  Aligned_cols=20  Identities=30%  Similarity=0.433  Sum_probs=10.5

Q ss_pred             eeeeCCCceeEecCCCCCcC
Q psy6349         123 TCEDFGNSHRCHCICWDDLR  142 (145)
Q Consensus       123 ~c~~~~g~~~c~c~~~~~~~  142 (145)
                      .|.|+.|+|+|.|++||.|.
T Consensus        14 ~C~nt~Gsy~C~C~~Gy~L~   33 (55)
T 2jkh_L           14 FCHEEQNSVVCSCARGYTLA   33 (55)
T ss_dssp             EEEEETTEEEEECCTTEEEC
T ss_pred             EeEcCCCCeEEeCCCCCEEC
Confidence            45555555555555555543

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=96.75  E-value=0.00075  Score=33.08  Aligned_cols=21  Identities=19%  Similarity=0.434  Sum_probs=12.9

Q ss_pred             CeeeeCCCceeEecCCCCCcC
Q psy6349         122 GTCEDFGNSHRCHCICWDDLR  142 (145)
Q Consensus       122 ~~c~~~~g~~~c~c~~~~~~~  142 (145)
                      ..|.++.|+|+|.|++||.|.
T Consensus        24 ~~C~n~~Gsy~C~C~~Gy~~~   44 (53)
T 1apq_A           24 HLCHNYVGGYFCSCRPGYELQ   44 (53)
T ss_dssp             SEEEEETTEEEEECSTTCEEC
T ss_pred             CEeECCCCCeEEECCCCCeEC
Confidence            356666666666666666554

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=96.54  E-value=0.0016  Score=31.84  Aligned_cols=29  Identities=28%  Similarity=0.597  Sum_probs=23.4

Q ss_pred             CCCCC-CEeee----CCCceeeecCCCcccCCCC
Q psy6349          15 ALCHN-GTCED----FGNSHRCHCMEGYTGSYCS   43 (145)
Q Consensus        15 ~~c~~-~~c~~----~~~~~~C~c~~g~~~~~c~   43 (145)
                      .+|.| +.|+.    ..+.|.|.|..||.|..|+
T Consensus        14 ~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce   47 (52)
T 3ca7_A           14 WYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE   47 (52)
T ss_dssp             HTSCTTCEEEEEEETTEEEEEEECCTTEESTTSC
T ss_pred             CcCCCCCEEecCccCCCCCEEEECCCCCcCCCCc
Confidence            36876 69986    3456899999999999996

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=96.48  E-value=0.004  Score=30.35  Aligned_cols=24  Identities=25%  Similarity=0.701  Sum_probs=17.3

Q ss_pred             CCCCCCEeeeCCCceeeecCCCccc
Q psy6349          15 ALCHNGTCEDFGNSHRCHCMEGYTG   39 (145)
Q Consensus        15 ~~c~~~~c~~~~~~~~C~c~~g~~~   39 (145)
                      .+|. ..|.+..|+|.|.|.+||.+
T Consensus        20 ~~C~-~~C~n~~Gsy~C~C~~Gy~~   43 (53)
T 1apq_A           20 PQCQ-HLCHNYVGGYFCSCRPGYEL   43 (53)
T ss_dssp             CTTS-SEEEEETTEEEEECSTTCEE
T ss_pred             CCCC-CEeECCCCCeEEECCCCCeE
Confidence            5564 47888778888888887763

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=96.33  E-value=0.0034  Score=44.20  Aligned_cols=89  Identities=22%  Similarity=0.487  Sum_probs=27.5

Q ss_pred             CEeeeCCCceeeecCCCcccCCCCccCCCCCCCCCCCCCee-eeCCCceEEe-CCCCcccCCccccCCCCcCCCCCCCCE
Q psy6349          20 GTCEDFGNSHRCHCMEGYTGSYCSIEINECESDPCQNGATC-QDLIGGYSCQ-CARGFQGQNCELNVDDCKPNPCQNGGI   97 (145)
Q Consensus        20 ~~c~~~~~~~~C~c~~g~~~~~c~~~~~~c~~~~c~~~~~c-~~~~~~~~c~-c~~g~~g~~c~~~~~~c~~~~~~~~~~   97 (145)
                      ..|....+.+.|.|..++.|..|+.-.......|+..+..+ ........|. |.-.+.+..|....     .+|.+++.
T Consensus       304 s~C~~~~g~~~C~C~~~ttG~~CE~C~pgy~~~P~~~gt~~p~~~g~~~~C~pC~Cn~~g~~CD~~t-----~~C~ngg~  378 (426)
T 3zyj_B          304 TVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNEL-----LHCQNGGT  378 (426)
T ss_dssp             SCEEEETTEEEECCCTTEESSSSCEECTTCCSSCCCCCBCCSSSSCBCCCCCCCCC------------------------
T ss_pred             hhcCCCCCCceeeCCCCCcCCCccccccccccCcccCCcccccCCCCCCcccCCCCCCCcCccccCc-----ccCCCCCC
Confidence            47887777789999999999999632222222233222111 1111122232 22223345564222     35677777


Q ss_pred             EeeCCCCeEeeCCCCCccC
Q psy6349          98 CHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        98 c~~~~~~~~C~c~~g~~~~  116 (145)
                      |.+..   .|.|++||.+.
T Consensus       379 C~~~~---~C~C~~G~~G~  394 (426)
T 3zyj_B          379 CHNNV---RCLCPAAYTGI  394 (426)
T ss_dssp             -------------------
T ss_pred             cCCCC---CCcCCCCCcCC
Confidence            86654   79999999985

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=96.30  E-value=0.00065  Score=33.19  Aligned_cols=21  Identities=24%  Similarity=0.437  Sum_probs=14.6

Q ss_pred             eeeeCCCceeEecCCCCCcCC
Q psy6349         123 TCEDFGNSHRCHCICWDDLRN  143 (145)
Q Consensus       123 ~c~~~~g~~~c~c~~~~~~~~  143 (145)
                      .|.++.|+|+|.|++||.|..
T Consensus        11 ~C~n~~gs~~C~C~~Gy~L~~   31 (51)
T 1kig_L           11 FCREERSEVRCSCAHGYVLGD   31 (51)
T ss_dssp             CCCEETTEECCCCCTTEEECT
T ss_pred             EeEcCCCCeEEeCCCCcEECC
Confidence            566777777777777776654

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=96.29  E-value=0.0032  Score=30.93  Aligned_cols=32  Identities=25%  Similarity=0.888  Sum_probs=25.7

Q ss_pred             CCCCCCCCeee--eCCCceEEeCCCCcccCCccc
Q psy6349          51 SDPCQNGATCQ--DLIGGYSCQCARGFQGQNCEL   82 (145)
Q Consensus        51 ~~~c~~~~~c~--~~~~~~~c~c~~g~~g~~c~~   82 (145)
                      ..||.+++.|.  ...+.|.|.|..+|.|..|+.
T Consensus        11 ~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~   44 (53)
T 1nql_B           11 DGYCLHDGVCMYIEALDKYACNCVVGYIGERCQY   44 (53)
T ss_dssp             CCEECTTCEEEEETTTTEEEEEECTTEESTTSCE
T ss_pred             CCCCCCCeEEeeecCCCCEEEecCCCCcCCCCCc
Confidence            35788888887  456789999999999998864

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=96.29  E-value=0.00074  Score=44.90  Aligned_cols=38  Identities=24%  Similarity=0.713  Sum_probs=29.5

Q ss_pred             ecCCCCCCCCCCC-CCEeeeCCCceeeecCCCcc--cCCCC
Q psy6349           6 VSSPGLKREALCH-NGTCEDFGNSHRCHCMEGYT--GSYCS   43 (145)
Q Consensus         6 ~~~~~~~~~~~c~-~~~c~~~~~~~~C~c~~g~~--~~~c~   43 (145)
                      ++++|....+.|. ++.|.+..|+|.|.|.+||.  |..|.
T Consensus         4 DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG~~C~   44 (285)
T 1gl4_A            4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCV   44 (285)
T ss_dssp             ---CHHHHGGGSCTTEEEEECSSCEEEEECTTEEECSSSEE
T ss_pred             cchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCCCCCcCC
Confidence            3566666678896 57999999999999999998  66674

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=96.29  E-value=0.004  Score=32.39  Aligned_cols=42  Identities=26%  Similarity=0.588  Sum_probs=27.6

Q ss_pred             ecCCCCCCCCCCCCCEeeeCCC-ceeeecCCCcc----cCCCCccCCCC
Q psy6349           6 VSSPGLKREALCHNGTCEDFGN-SHRCHCMEGYT----GSYCSIEINEC   49 (145)
Q Consensus         6 ~~~~~~~~~~~c~~~~c~~~~~-~~~C~c~~g~~----~~~c~~~~~~c   49 (145)
                      ++++|......|. ..|++..+ +|.|.|..||.    +..|. ++++|
T Consensus         4 d~~eC~~~nggC~-h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~-d~dec   50 (69)
T 1kli_L            4 DQLICVNENGGCE-QYCSDHTGTKRSCRCHEGYSLLADGVSCT-PTVEY   50 (69)
T ss_dssp             CCCCTTSGGGGCS-SEEEEETTTEEEEECCTTEEECTTSSCEE-ECSSS
T ss_pred             ccccccCCCCCcC-CEeEcCCCCCEEEeCCCCCeECCCCCccc-Ccccc
Confidence            4555654444564 37888887 78999999986    45563 45544

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=96.25  E-value=0.0068  Score=31.69  Aligned_cols=33  Identities=12%  Similarity=0.120  Sum_probs=26.0

Q ss_pred             ecCCCCCCCCCCCC-CEeeeCCCceeee-cCCCcc
Q psy6349           6 VSSPGLKREALCHN-GTCEDFGNSHRCH-CMEGYT   38 (145)
Q Consensus         6 ~~~~~~~~~~~c~~-~~c~~~~~~~~C~-c~~g~~   38 (145)
                      ++++|....+.|.+ +.|+++.++|+|. +..||.
T Consensus         2 DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~   36 (71)
T 2kl7_A            2 DVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVI   36 (71)
T ss_dssp             CSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCC
T ss_pred             ccccccCCCCCCCCCCEeECCCCCeEecccCCccc
Confidence            46778777788964 6899999999997 455665

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=96.19  E-value=0.0026  Score=38.67  Aligned_cols=42  Identities=36%  Similarity=0.888  Sum_probs=31.9

Q ss_pred             CCCCCCCCCCCCeeeeCCCceEEeCCCCcccCCccccCCCCcC
Q psy6349          47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVDDCKP   89 (145)
Q Consensus        47 ~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~~~~~~c~~   89 (145)
                      ..|...||..++.|.+..+.|.|.|.+||.|..|. .+++|.+
T Consensus       120 ~~c~~~~C~~~g~C~~~~~~~~c~C~~g~~G~~Ce-~~~~c~~  161 (162)
T 1g1s_A          120 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE-YVRDDDD  161 (162)
T ss_dssp             CCCCTTGGGGSEEEEECSSSEEEEECTTEESTTSC-EECC---
T ss_pred             CCCcCCCCCCCCEEecCCCCceEeCCCCCcCcccc-cCcccCC
Confidence            45666778778899998889999999999999997 4456653

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=96.11  E-value=0.0032  Score=30.67  Aligned_cols=33  Identities=24%  Similarity=0.668  Sum_probs=22.7

Q ss_pred             CCCCCCEeeeCCCceeeecCCCcc----cCCCCccCCCC
Q psy6349          15 ALCHNGTCEDFGNSHRCHCMEGYT----GSYCSIEINEC   49 (145)
Q Consensus        15 ~~c~~~~c~~~~~~~~C~c~~g~~----~~~c~~~~~~c   49 (145)
                      ..|.+ .|++..++|.|.|..||.    +..|. +++++
T Consensus         6 g~C~~-~C~n~~gs~~C~C~~Gy~L~~d~~tC~-dide~   42 (51)
T 1kig_L            6 GGCDQ-FCREERSEVRCSCAHGYVLGDDSKSCV-STERF   42 (51)
T ss_dssp             TSSSS-CCCEETTEECCCCCTTEEECTTSSCEE-ECSSS
T ss_pred             CCcCC-EeEcCCCCeEEeCCCCcEECCCCCccc-cCCcc
Confidence            34543 688888889999999986    45553 45543

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=96.11  E-value=0.0031  Score=31.75  Aligned_cols=20  Identities=25%  Similarity=0.431  Sum_probs=10.7

Q ss_pred             eeeeCC-CceeEecCCCCCcC
Q psy6349         123 TCEDFG-NSHRCHCICWDDLR  142 (145)
Q Consensus       123 ~c~~~~-g~~~c~c~~~~~~~  142 (145)
                      .|.++. |+|+|.|++||.|.
T Consensus        12 ~C~n~~~gs~~C~C~~Gy~L~   32 (59)
T 2wph_E           12 FCKNSADNKVVCSCTEGYRLA   32 (59)
T ss_dssp             EEEECSTTCEEEECCTTEEEC
T ss_pred             EeEeCCCCCEEeeCCCCcEEC
Confidence            455554 35555555555554

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=96.03  E-value=0.004  Score=31.22  Aligned_cols=28  Identities=29%  Similarity=0.661  Sum_probs=21.9

Q ss_pred             CCCC-CEeee----CCCceeeecCCCcccCCCC
Q psy6349          16 LCHN-GTCED----FGNSHRCHCMEGYTGSYCS   43 (145)
Q Consensus        16 ~c~~-~~c~~----~~~~~~C~c~~g~~~~~c~   43 (145)
                      +|.| |.|..    ....|.|.|.+||.|.+|+
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce   47 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE   47 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESSSSC
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccCCCc
Confidence            6876 68973    3346789999999999996

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=96.00  E-value=0.012  Score=34.22  Aligned_cols=56  Identities=25%  Similarity=0.514  Sum_probs=34.9

Q ss_pred             CCCC-CEeeeCC--Cce-eeecCCCcccCCCCccCC-CCCCCCCCCCCeeeeCCCceEEeCCCCcccCCcc
Q psy6349          16 LCHN-GTCEDFG--NSH-RCHCMEGYTGSYCSIEIN-ECESDPCQNGATCQDLIGGYSCQCARGFQGQNCE   81 (145)
Q Consensus        16 ~c~~-~~c~~~~--~~~-~C~c~~g~~~~~c~~~~~-~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~   81 (145)
                      +|.| +.|++..  ..+ .|.|..+|.|..|++++. .|...          ....|.+.+...+.|..|+
T Consensus         2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~~~~~~C~~g----------~G~~YrG~~~~t~sG~~Cq   62 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYEG----------NGHFYRGKASTDTMGRPCL   62 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEECCTTEESTTSCEESSCCSBCS----------SCTTCCSCCCBBTTSCBBC
T ss_pred             CCCCcCCcCCCcccCCCCCccCCCCCCCccccccCcCCCccc----------ccccceeeccccccCCccc
Confidence            5776 6998874  344 899999999999975443 23211          1223455555555565554

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=95.97  E-value=0.0029  Score=31.07  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=12.0

Q ss_pred             eeeeCCC-ceeEecCCCCCcCC
Q psy6349         123 TCEDFGN-SHRCHCICWDDLRN  143 (145)
Q Consensus       123 ~c~~~~g-~~~c~c~~~~~~~~  143 (145)
                      .|.++.| +|+|.|++||.|..
T Consensus        12 ~C~n~~ggs~~C~C~~Gy~L~~   33 (53)
T 2bz6_L           12 YCSDHTGTKRSCRCHEGYSLLA   33 (53)
T ss_dssp             EEEEETTTEEEEECCTTEEECT
T ss_pred             EeEcCCCCCEEeeCCCCCEECC
Confidence            4555555 46666666665543

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=95.82  E-value=0.013  Score=35.81  Aligned_cols=28  Identities=29%  Similarity=0.738  Sum_probs=21.1

Q ss_pred             CCC-CCEeeeCC--Cceee-ecCCCcccCCCC
Q psy6349          16 LCH-NGTCEDFG--NSHRC-HCMEGYTGSYCS   43 (145)
Q Consensus        16 ~c~-~~~c~~~~--~~~~C-~c~~g~~~~~c~   43 (145)
                      +|. ++.|....  +.+.| .|.++|.|..|+
T Consensus         2 ~C~~~g~C~~~~~~g~~~C~~C~~g~~G~~Ce   33 (162)
T 1klo_A            2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCE   33 (162)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCTTEESTTSC
T ss_pred             cCcCcCcccccCCCCCEEeCCCCCCCcCCCCc
Confidence            355 36887654  56789 799999999886

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=95.76  E-value=0.0067  Score=44.00  Aligned_cols=15  Identities=40%  Similarity=0.871  Sum_probs=11.1

Q ss_pred             eEEeCCCCcccCCcc
Q psy6349          67 YSCQCARGFQGQNCE   81 (145)
Q Consensus        67 ~~c~c~~g~~g~~c~   81 (145)
                      +.|.|..+|.|..|.
T Consensus       460 g~C~C~~g~~G~~Ce  474 (525)
T 4aqs_A          460 GYCYCKRLVTGQRCD  474 (525)
T ss_dssp             CCBCBCTTCCSTTTC
T ss_pred             CEEECCCCCcCCCcc
Confidence            457888888887774

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=95.75  E-value=0.0071  Score=38.81  Aligned_cols=60  Identities=30%  Similarity=0.805  Sum_probs=44.5

Q ss_pred             CCCCC-CCEeeeCCCceeeecCCC------cccCCCCccCCCCCCC---CCCCC--CeeeeCCCceEEeCCCCcccCCcc
Q psy6349          14 EALCH-NGTCEDFGNSHRCHCMEG------YTGSYCSIEINECESD---PCQNG--ATCQDLIGGYSCQCARGFQGQNCE   81 (145)
Q Consensus        14 ~~~c~-~~~c~~~~~~~~C~c~~g------~~~~~c~~~~~~c~~~---~c~~~--~~c~~~~~~~~c~c~~g~~g~~c~   81 (145)
                      ..+|. +|.|..    ..|.|.++      |.|..|+.+...|...   +|..+  +.|..    ..|.|.++|.|..|.
T Consensus       142 ~~~Csg~G~C~~----g~C~C~~gw~~~~~~~G~~Ce~~~~~C~~~~g~~C~~~~~G~C~~----g~C~C~~G~~G~~C~  213 (217)
T 2p28_B          142 SIICSGLGDCVC----GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC----GKCRCHPGFEGSACQ  213 (217)
T ss_dssp             SCBGGGTEEEET----TEEEECCCCSTTCCEESTTSCEESSCSCEETTEETTCTTTEEEET----TEEEECTTEESTTSC
T ss_pred             CCCCCCCCEEeC----CceECCCCCCCcccEECCCcccCCccCCCCCCCCCCCCCCcEEeC----CeeECCCCCccCCcC
Confidence            35675 578874    26999999      5899997555667543   57766  78873    279999999999885

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=95.75  E-value=0.012  Score=28.53  Aligned_cols=29  Identities=28%  Similarity=0.866  Sum_probs=22.5

Q ss_pred             CCCCCCEee--eCCCceeeecCCCcccCCCC
Q psy6349          15 ALCHNGTCE--DFGNSHRCHCMEGYTGSYCS   43 (145)
Q Consensus        15 ~~c~~~~c~--~~~~~~~C~c~~g~~~~~c~   43 (145)
                      ..|.||.|.  ...+.+.|.|..+|.|.+|+
T Consensus        18 ~yC~nG~C~~i~~~~~~~C~C~~gy~G~RCe   48 (50)
T 2rnl_A           18 NFCIHGECKYIEHLEAVTCKCQQEYFGERCG   48 (50)
T ss_dssp             GTCSSSEEEEETTTTEEEEECCSSCCSSSCC
T ss_pred             CcCCCCEEEEecCCCCeeEECCCCccccccc
Confidence            567788887  33456789999999999885

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=95.74  E-value=0.0083  Score=29.05  Aligned_cols=29  Identities=34%  Similarity=0.867  Sum_probs=22.0

Q ss_pred             CCCCCCEee--eCCCceeeecCCCcccCCCC
Q psy6349          15 ALCHNGTCE--DFGNSHRCHCMEGYTGSYCS   43 (145)
Q Consensus        15 ~~c~~~~c~--~~~~~~~C~c~~g~~~~~c~   43 (145)
                      ..|.||.|.  ...+.+.|.|..+|+|.+|+
T Consensus        14 ~yC~nG~C~~~~~~~~~~C~C~~gy~G~RCe   44 (50)
T 1iox_A           14 HYCIKGRCRFVVAEQTPSCVCDEGYIGARCE   44 (50)
T ss_dssp             TSCTTCCEEEETTTTEEEECCCTTEETTTTC
T ss_pred             CcccCCEEEeEcCCCCeEEECCCCcccCCCC
Confidence            567778885  33456789999999999986

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=95.68  E-value=0.01  Score=29.08  Aligned_cols=32  Identities=34%  Similarity=0.823  Sum_probs=22.0

Q ss_pred             CCCCCEeeeCCC-ceeeecCCCcc----cCCCCccCCCC
Q psy6349          16 LCHNGTCEDFGN-SHRCHCMEGYT----GSYCSIEINEC   49 (145)
Q Consensus        16 ~c~~~~c~~~~~-~~~C~c~~g~~----~~~c~~~~~~c   49 (145)
                      .|. ..|++..+ +|.|.|..||.    +..|. ++++|
T Consensus         8 gC~-~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~-d~dec   44 (53)
T 2bz6_L            8 GCE-QYCSDHTGTKRSCRCHEGYSLLADGVSCT-PTVEY   44 (53)
T ss_dssp             GCS-SEEEEETTTEEEEECCTTEEECTTSSCEE-ECSSS
T ss_pred             CcC-CEeEcCCCCCEEeeCCCCCEECCCCCccc-CCccc
Confidence            454 36888887 68899999886    45563 55554

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=95.60  E-value=0.016  Score=28.04  Aligned_cols=30  Identities=33%  Similarity=0.938  Sum_probs=22.7

Q ss_pred             CCCCCCCEeeeC--CCceeeecCCCcccCCCC
Q psy6349          14 EALCHNGTCEDF--GNSHRCHCMEGYTGSYCS   43 (145)
Q Consensus        14 ~~~c~~~~c~~~--~~~~~C~c~~g~~~~~c~   43 (145)
                      ...|.||.|...  ...+.|.|..||+|.+|+
T Consensus        13 ~~yC~nG~C~~~~~~~~~~C~C~~gy~G~RCe   44 (50)
T 3e50_C           13 TQFCFHGTCRFLVQEDKPACVCHSGYVGARCE   44 (50)
T ss_pred             cCcccCCEEeeccCCCCeEEECCCCCcccCCC
Confidence            456777888742  356789999999999885

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=95.59  E-value=0.0068  Score=40.36  Aligned_cols=34  Identities=21%  Similarity=0.598  Sum_probs=21.3

Q ss_pred             cCCCCc--CCCCCCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          83 NVDDCK--PNPCQNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        83 ~~~~c~--~~~~~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      ++++|.  .+.|..++.|+++.++|.|.|.+||.+.
T Consensus         4 DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~Gn   39 (285)
T 1gl4_A            4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGN   39 (285)
T ss_dssp             ---CHHHHGGGSCTTEEEEECSSCEEEEECTTEEEC
T ss_pred             cchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCCC
Confidence            345553  3456666777777777777777777754

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=95.58  E-value=0.006  Score=37.04  Aligned_cols=34  Identities=29%  Similarity=0.845  Sum_probs=27.9

Q ss_pred             CCcCCCCCCCCEEeeCCCCeEeeCCCCCccCCCCC
Q psy6349          86 DCKPNPCQNGGICHDLINHFSCSCPSGLKREALCH  120 (145)
Q Consensus        86 ~c~~~~~~~~~~c~~~~~~~~C~c~~g~~~~~~C~  120 (145)
                      +|...+|..++.|.+..+.|.|.|++||.+. .|.
T Consensus       121 ~c~~~~C~~~g~C~~~~~~~~c~C~~g~~G~-~Ce  154 (162)
T 1g1s_A          121 SCQDMSCSKQGECLETIGNYTCSCYPGFYGP-ECE  154 (162)
T ss_dssp             CCCTTGGGGSEEEEECSSSEEEEECTTEEST-TSC
T ss_pred             CCcCCCCCCCCEEecCCCCceEeCCCCCcCc-ccc
Confidence            3445567778899999999999999999985 576

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=95.43  E-value=0.018  Score=30.09  Aligned_cols=27  Identities=33%  Similarity=0.904  Sum_probs=16.3

Q ss_pred             cCCCCCC--CCCCCCCeeeeCCCceEEeC
Q psy6349          45 EINECES--DPCQNGATCQDLIGGYSCQC   71 (145)
Q Consensus        45 ~~~~c~~--~~c~~~~~c~~~~~~~~c~c   71 (145)
                      ++++|..  .+|...+.|++..++|.|.+
T Consensus         2 DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~   30 (71)
T 2kl7_A            2 DVNECLTIPEACKGEMKCINHYGGYLCLP   30 (71)
T ss_dssp             CSCCTTCCCCSCTTEEEEEETTCCEEEEE
T ss_pred             ccccccCCCCCCCCCCEeECCCCCeEecc
Confidence            4566654  34555556777777777753

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=95.32  E-value=0.011  Score=30.73  Aligned_cols=34  Identities=21%  Similarity=0.311  Sum_probs=22.8

Q ss_pred             cCCCCcCCCCCCCCEEeeCCC-CeEeeCCCCCccC
Q psy6349          83 NVDDCKPNPCQNGGICHDLIN-HFSCSCPSGLKRE  116 (145)
Q Consensus        83 ~~~~c~~~~~~~~~~c~~~~~-~~~C~c~~g~~~~  116 (145)
                      ++++|..........|+++.+ +|.|.|++||.+.
T Consensus         4 d~~eC~~~nggC~h~C~n~~g~s~~C~C~~Gy~L~   38 (69)
T 1kli_L            4 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLL   38 (69)
T ss_dssp             CCCCTTSGGGGCSSEEEEETTTEEEEECCTTEEEC
T ss_pred             ccccccCCCCCcCCEeEcCCCCCEEEeCCCCCeEC
Confidence            345565433334567888877 7889999998764

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=95.29  E-value=0.043  Score=30.44  Aligned_cols=69  Identities=20%  Similarity=0.594  Sum_probs=42.8

Q ss_pred             CCCCCCCCCCCCeeee-CCCceEEeCCCCcc--cCCccccC-CCCcC--CCCCCCCEEeeCC-----CCeEeeCCCCCcc
Q psy6349          47 NECESDPCQNGATCQD-LIGGYSCQCARGFQ--GQNCELNV-DDCKP--NPCQNGGICHDLI-----NHFSCSCPSGLKR  115 (145)
Q Consensus        47 ~~c~~~~c~~~~~c~~-~~~~~~c~c~~g~~--g~~c~~~~-~~c~~--~~~~~~~~c~~~~-----~~~~C~c~~g~~~  115 (145)
                      ..|....|...+.|.+ ..+...|+|.++|.  |..|.... ..|..  ..|...++|....     +...|.|.++|..
T Consensus         5 h~C~~~~C~~NA~C~r~~~g~e~C~C~~gy~gdg~~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~~~   84 (99)
T 1ob1_C            5 HQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDSY   84 (99)
T ss_dssp             TCCCSCCCCTTEEEECCTTSCCEEEECTTEEEETTEEEECSCCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECSTTCC
T ss_pred             eEeccCCCCCCCCeEEcCCCCEEEEecCCeecCCCeEeeCCCCChhhcCCCcCCCceeEecCCcccCCceEeEeCCCCcc
Confidence            3576677888888876 46778899999997  44454222 34542  2355566665543     3456666666544

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=95.14  E-value=0.011  Score=31.53  Aligned_cols=30  Identities=30%  Similarity=0.789  Sum_probs=20.9

Q ss_pred             CCCCCCCEeee--CCCceeeecCCCcccCCCC
Q psy6349          14 EALCHNGTCED--FGNSHRCHCMEGYTGSYCS   43 (145)
Q Consensus        14 ~~~c~~~~c~~--~~~~~~C~c~~g~~~~~c~   43 (145)
                      ...|.||.|+.  ..+.+.|.|.++|+|.+|+
T Consensus        45 ~~yClnG~C~~i~~~~~~~C~C~~GYtG~RCE   76 (79)
T 1xdt_R           45 KDFCIHGECKYVKELRAPSCICHPGYHGERCH   76 (79)
T ss_dssp             TTCCSSEEECCBGGGTBCCEEECTTEESTTCC
T ss_pred             cCcCCCCEeeeecCCCCeEEEcCCCccccccc
Confidence            35677778842  2345678888888888885

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=95.12  E-value=0.018  Score=42.13  Aligned_cols=35  Identities=37%  Similarity=0.971  Sum_probs=19.1

Q ss_pred             CCCCCCCCCCCCeeee-CCCceEEeCC-CCcccCCcc
Q psy6349          47 NECESDPCQNGATCQD-LIGGYSCQCA-RGFQGQNCE   81 (145)
Q Consensus        47 ~~c~~~~c~~~~~c~~-~~~~~~c~c~-~g~~g~~c~   81 (145)
                      ++|.+.||.+++.|.. ..+.|.|.|. .||.|..|+
T Consensus         3 d~C~~~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce   39 (553)
T 1q4g_A            3 NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCT   39 (553)
T ss_dssp             CGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTC
T ss_pred             CcCCCCCCCCCCCcCCCCCCceEeeCCCCCcCCCCCC
Confidence            3455555555555555 4555555555 555555554

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=94.98  E-value=0.12  Score=28.85  Aligned_cols=69  Identities=22%  Similarity=0.483  Sum_probs=50.9

Q ss_pred             CCCCCCCCCCCCeeee-CCCceEEeCCCCcc--cCCccccCCC-CcC--CCCCCCCEEeeCC-CCeEeeCCCCCccC
Q psy6349          47 NECESDPCQNGATCQD-LIGGYSCQCARGFQ--GQNCELNVDD-CKP--NPCQNGGICHDLI-NHFSCSCPSGLKRE  116 (145)
Q Consensus        47 ~~c~~~~c~~~~~c~~-~~~~~~c~c~~g~~--g~~c~~~~~~-c~~--~~~~~~~~c~~~~-~~~~C~c~~g~~~~  116 (145)
                      ..|....|...+.|.+ ..+...|+|..+|.  |..|... +. |..  ..|...++|.... ....|.|.++|...
T Consensus        11 h~C~~t~Cp~NA~C~r~~~G~e~CrCl~gY~~dg~~Cv~~-Np~C~~nNGGCd~nAeC~~~~~~ki~C~C~~~~~~~   86 (105)
T 1n1i_A           11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPA-SITCEENNGGCAPEAECTMDDKKEVECKCTKEGSEP   86 (105)
T ss_dssp             TSCCSSCCCTTEEEEECTTSCEEEEECTTEEECSSSEEEC-CCCTTSGGGGSCTTSEEEECTTSCEEEECCSTTCCE
T ss_pred             cEecCCCCCCCCCeEECCCCCEeEEEECCeeccCCEEEEC-CcchhhcCCCcCCCcEeEECCCCEEEeECCCCCCcc
Confidence            5677777888889987 57888999999998  5566544 44 543  3477788888775 56789998887554

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=94.72  E-value=0.27  Score=27.53  Aligned_cols=59  Identities=22%  Similarity=0.536  Sum_probs=41.2

Q ss_pred             CCC-CCEeee-CCCceeeecCCCcc--cCCCCccCCC-CCC--CCCCCCCeeeeCC-CceEEeCCCCc
Q psy6349          16 LCH-NGTCED-FGNSHRCHCMEGYT--GSYCSIEINE-CES--DPCQNGATCQDLI-GGYSCQCARGF   75 (145)
Q Consensus        16 ~c~-~~~c~~-~~~~~~C~c~~g~~--~~~c~~~~~~-c~~--~~c~~~~~c~~~~-~~~~c~c~~g~   75 (145)
                      .|. |+.|.+ ..|...|.|..+|.  |..|. ..+. |..  .-|...+.|.... ....|.|..++
T Consensus        17 ~Cp~NA~C~r~~~G~e~CrCl~gY~~dg~~Cv-~~Np~C~~nNGGCd~nAeC~~~~~~ki~C~C~~~~   83 (105)
T 1n1i_A           17 NVPENAACYRYLDGTEEWRCLLGFKEVGGKCV-PASITCEENNGGCAPEAECTMDDKKEVECKCTKEG   83 (105)
T ss_dssp             CCCTTEEEEECTTSCEEEEECTTEEECSSSEE-ECCCCTTSGGGGSCTTSEEEECTTSCEEEECCSTT
T ss_pred             CCCCCCCeEECCCCCEeEEEECCeeccCCEEE-ECCcchhhcCCCcCCCcEeEECCCCEEEeECCCCC
Confidence            454 678987 56788999999998  55664 3355 543  3377788888764 66778887764

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=94.71  E-value=0.029  Score=41.25  Aligned_cols=34  Identities=44%  Similarity=1.094  Sum_probs=16.2

Q ss_pred             CCCCCCCCCCCeeee-CCCceEEeCC-CCcccCCcc
Q psy6349          48 ECESDPCQNGATCQD-LIGGYSCQCA-RGFQGQNCE   81 (145)
Q Consensus        48 ~c~~~~c~~~~~c~~-~~~~~~c~c~-~g~~g~~c~   81 (145)
                      +|.+.||.+++.|.. ..+.|.|.|. .||.|.+|+
T Consensus         3 ~C~s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce   38 (587)
T 3nt1_A            3 PCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT   38 (587)
T ss_dssp             TTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTC
T ss_pred             CCCCCCCCCCCEeeCCCCCCeEEecCCCCccCCCCC
Confidence            344445555555542 2244555555 555554443

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=94.29  E-value=0.03  Score=40.99  Aligned_cols=34  Identities=29%  Similarity=0.681  Sum_probs=28.7

Q ss_pred             CCCCCCC-CEeee-CCCceeeecC-CCcccCCCCccC
Q psy6349          13 REALCHN-GTCED-FGNSHRCHCM-EGYTGSYCSIEI   46 (145)
Q Consensus        13 ~~~~c~~-~~c~~-~~~~~~C~c~-~g~~~~~c~~~~   46 (145)
                      ...+|.| |.|.+ ..+.|.|.|. .||.|..|+...
T Consensus         6 ~~~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~~~   42 (553)
T 1q4g_A            6 CYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPE   42 (553)
T ss_dssp             GGCCCCTTCEEEEETTTEEEEECTTSSEETTTTCEEC
T ss_pred             CCCCCCCCCCcCCCCCCceEeeCCCCCcCCCCCCCCc
Confidence            4578986 79999 7889999999 999999997543

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=94.16  E-value=0.031  Score=27.88  Aligned_cols=30  Identities=50%  Similarity=0.969  Sum_probs=24.0

Q ss_pred             CCCCCCeeee----CCCceEEeCCCCcccCCccc
Q psy6349          53 PCQNGATCQD----LIGGYSCQCARGFQGQNCEL   82 (145)
Q Consensus        53 ~c~~~~~c~~----~~~~~~c~c~~g~~g~~c~~   82 (145)
                      +|.+++.|..    ....+.|.|..||.|..|+.
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~   48 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY   48 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCE
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccCCCcc
Confidence            6888888873    34568899999999999863

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=93.89  E-value=0.21  Score=27.69  Aligned_cols=59  Identities=24%  Similarity=0.684  Sum_probs=33.6

Q ss_pred             CCC-CCEeeeC-CCceeeecCCCcc--cCCCCccC-CCCCC--CCCCCCCeeeeCC-----CceEEeCCCC
Q psy6349          16 LCH-NGTCEDF-GNSHRCHCMEGYT--GSYCSIEI-NECES--DPCQNGATCQDLI-----GGYSCQCARG   74 (145)
Q Consensus        16 ~c~-~~~c~~~-~~~~~C~c~~g~~--~~~c~~~~-~~c~~--~~c~~~~~c~~~~-----~~~~c~c~~g   74 (145)
                      .|. |+.|.+. .+...|+|.++|.  +..|.... ..|..  .-|...+.|....     +...|.|..+
T Consensus        11 ~C~~NA~C~r~~~g~e~C~C~~gy~gdg~~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g   81 (99)
T 1ob1_C           11 QCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKP   81 (99)
T ss_dssp             CCCTTEEEECCTTSCCEEEECTTEEEETTEEEECSCCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECST
T ss_pred             CCCCCCCeEEcCCCCEEEEecCCeecCCCeEeeCCCCChhhcCCCcCCCceeEecCCcccCCceEeEeCCC
Confidence            443 5778764 5677888988887  44554221 34543  2366666666543     3345555444

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=93.02  E-value=0.087  Score=38.82  Aligned_cols=32  Identities=28%  Similarity=0.742  Sum_probs=26.8

Q ss_pred             CCCCCCC-CEeee-CCCceeeecC-CCcccCCCCc
Q psy6349          13 REALCHN-GTCED-FGNSHRCHCM-EGYTGSYCSI   44 (145)
Q Consensus        13 ~~~~c~~-~~c~~-~~~~~~C~c~-~g~~~~~c~~   44 (145)
                      ...+|.| |.|.+ ..+.|.|.|. .||.|..|+.
T Consensus         5 ~s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~   39 (587)
T 3nt1_A            5 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT   39 (587)
T ss_dssp             TTCCCCTTCEEEEEETTEEEEECTTSSEETTTTCE
T ss_pred             CCCCCCCCCEeeCCCCCCeEEecCCCCccCCCCCC
Confidence            5678986 79995 4578999999 9999999974

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=92.64  E-value=0.11  Score=25.97  Aligned_cols=22  Identities=27%  Similarity=0.708  Sum_probs=18.1

Q ss_pred             CCEEeeCC-CCeEeeCCCCCccC
Q psy6349          95 GGICHDLI-NHFSCSCPSGLKRE  116 (145)
Q Consensus        95 ~~~c~~~~-~~~~C~c~~g~~~~  116 (145)
                      .+.|+++. ++|.|.|++||.+.
T Consensus        10 ~~~C~n~~~gs~~C~C~~Gy~L~   32 (59)
T 2wph_E           10 EQFCKNSADNKVVCSCTEGYRLA   32 (59)
T ss_dssp             SSEEEECSTTCEEEECCTTEEEC
T ss_pred             CCEeEeCCCCCEEeeCCCCcEEC
Confidence            45788888 59999999999864

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=91.92  E-value=0.077  Score=32.41  Aligned_cols=24  Identities=21%  Similarity=0.520  Sum_probs=17.5

Q ss_pred             CCCCeeeeCCCceeEecCCCCCcCC
Q psy6349         119 CHNGTCEDFGNSHRCHCICWDDLRN  143 (145)
Q Consensus       119 C~~~~c~~~~g~~~c~c~~~~~~~~  143 (145)
                      |.+ .|.+..|+|+|.|++||.|..
T Consensus       137 C~~-~C~n~~g~~~C~C~~Gy~l~~  160 (170)
T 1szb_A          137 CDH-HCHNHLGGFYCSCRAGYVLHR  160 (170)
T ss_dssp             SSS-EEEEETTEEEEECCTTEEECT
T ss_pred             cCC-ccccCCCCEEEeCCCCcEECC
Confidence            543 688888888888888887654

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=91.23  E-value=0.5  Score=27.26  Aligned_cols=36  Identities=36%  Similarity=0.881  Sum_probs=26.7

Q ss_pred             CCCCCCeeeeCC--Cce-EEeCCCCcccCCccccCC-CCc
Q psy6349          53 PCQNGATCQDLI--GGY-SCQCARGFQGQNCELNVD-DCK   88 (145)
Q Consensus        53 ~c~~~~~c~~~~--~~~-~c~c~~g~~g~~c~~~~~-~c~   88 (145)
                      ||.+++.|+...  ..+ .|.|..+|.|..|..++. +|.
T Consensus         2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~~~~~~C~   41 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCY   41 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEECCTTEESTTSCEESSCCSB
T ss_pred             CCCCcCCcCCCcccCCCCCccCCCCCCCccccccCcCCCc
Confidence            577888897663  444 899999999999976543 443

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=90.43  E-value=0.088  Score=38.21  Aligned_cols=15  Identities=33%  Similarity=0.680  Sum_probs=10.8

Q ss_pred             eeeecCCCcccCCCC
Q psy6349          29 HRCHCMEGYTGSYCS   43 (145)
Q Consensus        29 ~~C~c~~g~~~~~c~   43 (145)
                      +.|.|.++|.|..|+
T Consensus       460 g~C~C~~g~~G~~Ce  474 (525)
T 4aqs_A          460 GYCYCKRLVTGQRCD  474 (525)
T ss_dssp             CCBCBCTTCCSTTTC
T ss_pred             CEEECCCCCcCCCcc
Confidence            457788888777773

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=89.67  E-value=0.44  Score=28.97  Aligned_cols=18  Identities=33%  Similarity=1.185  Sum_probs=15.2

Q ss_pred             eeeeCCCceEEeCCCCcc
Q psy6349          59 TCQDLIGGYSCQCARGFQ   76 (145)
Q Consensus        59 ~c~~~~~~~~c~c~~g~~   76 (145)
                      .|.+..++|.|.|.+||.
T Consensus       140 ~C~n~~g~~~C~C~~Gy~  157 (170)
T 1szb_A          140 HCHNHLGGFYCSCRAGYV  157 (170)
T ss_dssp             EEEEETTEEEEECCTTEE
T ss_pred             ccccCCCCEEEeCCCCcE
Confidence            688888888899988886

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=89.48  E-value=0.55  Score=32.84  Aligned_cols=37  Identities=32%  Similarity=0.866  Sum_probs=29.1

Q ss_pred             CCCCCCCCCCCCCeeeeCCCceEEeCCC-CcccCCccc
Q psy6349          46 INECESDPCQNGATCQDLIGGYSCQCAR-GFQGQNCEL   82 (145)
Q Consensus        46 ~~~c~~~~c~~~~~c~~~~~~~~c~c~~-g~~g~~c~~   82 (145)
                      .+.|...||.+++.|......|.|.|.. +|.|+.|..
T Consensus       185 ~~~C~~~pC~n~g~C~~~~~~~~C~C~~~~~~G~~C~~  222 (410)
T 3asi_A          185 STTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCND  222 (410)
T ss_dssp             SSCCCTTSSSTTCEEEECSSSEEEECTTTSEESTTSCE
T ss_pred             CCCcccccCCCCCEecCCCCCceEeccCCcccCCCCCC
Confidence            3567778888888898888888899985 888877753

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=88.78  E-value=0.19  Score=30.00  Aligned_cols=28  Identities=29%  Similarity=0.819  Sum_probs=20.5

Q ss_pred             CCCCCCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          89 PNPCQNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        89 ~~~~~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      ..+|...+.|.+....|.|.|.++|.+.
T Consensus       124 ~~pc~~~g~C~~~~~~~~c~C~~g~~g~  151 (157)
T 1g1t_A          124 NTSCSGHGECVETINNYTCKCDPGFSGL  151 (157)
T ss_dssp             TTGGGGSEEEEEETTEEEEEECTTEEST
T ss_pred             CCCCCCCCEeecCCCCeeEECCCCccCc
Confidence            3445666778777778888888888775

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=88.66  E-value=0.23  Score=29.82  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=18.8

Q ss_pred             CeeeeCCCceeEecCCCCCcCCC
Q psy6349         122 GTCEDFGNSHRCHCICWDDLRNS  144 (145)
Q Consensus       122 ~~c~~~~g~~~c~c~~~~~~~~~  144 (145)
                      ..|.+..++++|.|++||.|..+
T Consensus       130 ~~C~n~~g~~~C~C~~Gy~l~~~  152 (159)
T 1nzi_A          130 HFCNNFIGGYFCSCPPEYFLHDD  152 (159)
T ss_dssp             SEEEEETTEEEEECCTTCEECTT
T ss_pred             CcccCcCCCEEEecCCCcEECCC
Confidence            47888889999999999987643

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=87.29  E-value=0.57  Score=33.16  Aligned_cols=24  Identities=21%  Similarity=0.620  Sum_probs=19.1

Q ss_pred             CeeeeCCCceEEeCCCCcccCCcc
Q psy6349          58 ATCQDLIGGYSCQCARGFQGQNCE   81 (145)
Q Consensus        58 ~~c~~~~~~~~c~c~~g~~g~~c~   81 (145)
                      ..|....+.+.|.|..++.|+.|.
T Consensus       304 s~C~~~~g~~~C~C~~~ttG~~CE  327 (426)
T 3zyj_B          304 TVCVYDNSKLTCECEHNTTGPDCG  327 (426)
T ss_dssp             SCEEEETTEEEECCCTTEESSSSC
T ss_pred             hhcCCCCCCceeeCCCCCcCCCcc
Confidence            357666677899999999999886

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=86.12  E-value=0.91  Score=27.08  Aligned_cols=31  Identities=32%  Similarity=0.744  Sum_probs=23.5

Q ss_pred             CCCC-CEeeeCC--Cce-eeecCCCcccCCCCccC
Q psy6349          16 LCHN-GTCEDFG--NSH-RCHCMEGYTGSYCSIEI   46 (145)
Q Consensus        16 ~c~~-~~c~~~~--~~~-~C~c~~g~~~~~c~~~~   46 (145)
                      +|.| +.|+...  ..+ .|.|..+|.|..|+++.
T Consensus        14 pC~NGGtC~~~~~~s~~~~C~Cp~g~~G~~Cei~~   48 (145)
T 2i9a_A           14 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDK   48 (145)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTTSCEES
T ss_pred             CCCCCCCcCCCccccCCccccCCCCCCCCceeccc
Confidence            6776 7998752  344 79999999999997544

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=85.42  E-value=0.89  Score=28.36  Aligned_cols=26  Identities=42%  Similarity=1.163  Sum_probs=16.5

Q ss_pred             CCCCCCeeeeCCCceEEeCCCCcccCCcc
Q psy6349          53 PCQNGATCQDLIGGYSCQCARGFQGQNCE   81 (145)
Q Consensus        53 ~c~~~~~c~~~~~~~~c~c~~g~~g~~c~   81 (145)
                      +|.+++.|....   .|.|..||.|..|+
T Consensus       154 ~C~ngG~Cv~P~---~C~C~~Gw~G~~C~  179 (188)
T 2ygo_A          154 GCRNGGFCNERR---ICECPDGFHGPHCE  179 (188)
T ss_dssp             CCCTTCEECTTS---CEECCTTCBTTTTC
T ss_pred             CCCCCCEeCCCC---cccCcCCCCCCCCc
Confidence            456666666443   36777777777775

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=85.19  E-value=1  Score=31.43  Aligned_cols=32  Identities=28%  Similarity=0.764  Sum_probs=26.8

Q ss_pred             CCCCCCCC-CEeeeCCCceeeecCC-CcccCCCC
Q psy6349          12 KREALCHN-GTCEDFGNSHRCHCME-GYTGSYCS   43 (145)
Q Consensus        12 ~~~~~c~~-~~c~~~~~~~~C~c~~-g~~~~~c~   43 (145)
                      |...+|.| +.|.+....|.|.|.. +|.|..|+
T Consensus       188 C~~~pC~n~g~C~~~~~~~~C~C~~~~~~G~~C~  221 (410)
T 3asi_A          188 CQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCN  221 (410)
T ss_dssp             CCTTSSSTTCEEEECSSSEEEECTTTSEESTTSC
T ss_pred             cccccCCCCCEecCCCCCceEeccCCcccCCCCC
Confidence            45578875 7999888889999996 99999996

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=83.22  E-value=1.4  Score=35.64  Aligned_cols=36  Identities=33%  Similarity=0.921  Sum_probs=28.8

Q ss_pred             CCCCCCCCCCCCeeeeCCCceEEeCC-CCcccCCccc
Q psy6349          47 NECESDPCQNGATCQDLIGGYSCQCA-RGFQGQNCEL   82 (145)
Q Consensus        47 ~~c~~~~c~~~~~c~~~~~~~~c~c~-~g~~g~~c~~   82 (145)
                      +.|...||.+++.|......+.|.|. ++|.|+.|..
T Consensus      1018 ~~C~~~pC~ngG~C~~~~~~~~C~C~~~g~~G~~C~~ 1054 (1245)
T 3qcw_A         1018 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCND 1054 (1245)
T ss_dssp             CCCCTTSSSSSCEEEEETTEEEEECTTSSCBSTTSCB
T ss_pred             CceECCcCCCCCEeCCCCCCCEEECCCCCCCCCCccC
Confidence            56777888888888877778889998 5888888764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=83.11  E-value=0.51  Score=32.21  Aligned_cols=18  Identities=28%  Similarity=0.722  Sum_probs=7.8

Q ss_pred             EEeeCCCCeEeeCCCCCc
Q psy6349          97 ICHDLINHFSCSCPSGLK  114 (145)
Q Consensus        97 ~c~~~~~~~~C~c~~g~~  114 (145)
                      .|.++.++|.|.|.+||.
T Consensus        13 ~C~n~~g~~~C~C~~g~~   30 (349)
T 3v64_C           13 GCTNSEGAFQCWCEAGYE   30 (349)
T ss_dssp             EECCC---CCEECCTTEE
T ss_pred             eeecCCCCeEEECCCCcc
Confidence            455555555555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	145
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	2e-11
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	2e-06
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	2e-11
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	2e-06
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	2e-11
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	6e-07
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	2e-10
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	5e-06
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	1e-09
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	9e-06
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	2e-09
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	1e-05
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	3e-09
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	2e-05
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	6e-09
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	0.001
d1haea_	63	g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Hu	8e-09
d1autl1	48	g.3.11.1 (L:49-96) Activated protein c (autoprothr	1e-06
d1autl1	48	g.3.11.1 (L:49-96) Activated protein c (autoprothr	7e-04
d1q4ga2	42	g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EG	7e-06
d1q4ga2	42	g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EG	0.004
d1tpga1	41	g.3.11.1 (A:51-91) Plasminogen activator (tissue-t	2e-05
d1cvua2	41	g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EG	2e-05
d1nqlb_	48	g.3.11.1 (B:) Epidermal growth factor, EGF {Human	3e-05
d3egfa_	53	g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse	5e-05
d1emoa1	43	g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sa	0.004

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (128), Expect = 2e-11
 Identities = 21/38 (55%), Positives = 28/38 (73%)

Query: 46 INECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELN 83
          +NEC S+PCQN ATC D IG + C C  G++G +CE+N
Sbjct: 1  VNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVN 38

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (94), Expect = 2e-06
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 84  VDDCKPNPCQNGGICHDLINHFSCSCPSG 112
           V++C  NPCQN   C D I  F C C  G
Sbjct: 1   VNECVSNPCQNDATCLDQIGEFQCICMPG 29

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (128), Expect = 2e-11
 Identities = 19/38 (50%), Positives = 27/38 (71%)

Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNV 84
          ++CE+ PCQN   C+D +G Y+C C  GF+G+NCEL  
Sbjct: 1  DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFT 38

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (94), Expect = 2e-06
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 85  DDCKPNPCQNGGICHDLINHFSCSCPSG 112
           D C+ +PCQN G C D +  ++C+C  G
Sbjct: 1   DQCETSPCQNQGKCKDGLGEYTCTCLEG 28

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (128), Expect = 2e-11
 Identities = 20/39 (51%), Positives = 29/39 (74%)

Query: 44 IEINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCEL 82
          ++ ++CES+PC NG +C+D I  Y C C  GF+G+NCEL
Sbjct: 1  VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (98), Expect = 6e-07
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 82  LNVDDCKPNPCQNGGICHDLINHFSCSCPSG 112
           ++ D C+ NPC NGG C D IN + C CP G
Sbjct: 1   VDGDQCESNPCLNGGSCKDDINSYECWCPFG 31

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 50.5 bits (121), Expect = 2e-10
 Identities = 17/36 (47%), Positives = 24/36 (66%)

Query: 46 INECESDPCQNGATCQDLIGGYSCQCARGFQGQNCE 81
           ++C S PCQNG +C+D +  Y C C   F+G+NCE
Sbjct: 2  GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 37

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 38.9 bits (91), Expect = 5e-06
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 84  VDDCKPNPCQNGGICHDLINHFSCSCPSG 112
            D C  +PCQNGG C D +  + C C   
Sbjct: 2   GDQCASSPCQNGGSCKDQLQSYICFCLPA 30

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (116), Expect = 1e-09
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCE 81
          +EC S PC +   C D I  + C+C  GF G  C+
Sbjct: 1  DECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 35

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (90), Expect = 9e-06
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 85  DDCKPNPCQNGGICHDLINHFSCSCPSG 112
           D+C  +PC + G C D IN F C CP+G
Sbjct: 1   DECASSPCLHNGRCLDKINEFQCECPTG 28

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (115), Expect = 2e-09
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNV 84
            C +  C     C + I  Y+C+C  GF G  CE  V
Sbjct: 2  AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIV 39

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (88), Expect = 1e-05
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 85  DDCKPNPCQNGGICHDLINHFSCSCPSG 112
             C    C   G C + IN+++C C  G
Sbjct: 2   AACTNTSCSGHGECVETINNYTCKCDPG 29

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (113), Expect = 3e-09
 Identities = 14/39 (35%), Positives = 17/39 (43%)

Query: 47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVD 85
            C+   C     C + IG Y+C C  GF G  CE   D
Sbjct: 2  ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRD 40

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (87), Expect = 2e-05
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 85  DDCKPNPCQNGGICHDLINHFSCSCPSG 112
             C+   C   G C + I +++CSC  G
Sbjct: 2   ASCQDMSCSKQGECLETIGNYTCSCYPG 29

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (111), Expect = 6e-09
 Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 2/41 (4%)

Query: 45 EINECE--SDPCQNGATCQDLIGGYSCQCARGFQGQNCELN 83
          +++EC   ++PC++   C + +G + CQC +G+ G  CE++
Sbjct: 2  DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEID 42

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 0.001
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 86  DCKPNPCQNGGICHDLINHFSCSCPSG 112
               NPC++ G C + +  F C C  G
Sbjct: 7   SLGANPCEHAGKCINTLGSFECQCLQG 33

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 8e-09
 Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 44 IEINECESDPCQNGATC-----QDLIGGYSCQCARGFQGQNCELNVDDCKPNPCQN 94
          ++  E E   C NG  C           Y C+C  GF G  C  NV     N  + 
Sbjct: 4  VKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQEKA 59

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (96), Expect = 1e-06
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 46 INECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNVD 85
           + C S  C +G TC D IG +SC C  G++G+ C+  V 
Sbjct: 8  EHPCASLCCGHG-TCIDGIGSFSCDCRSGWEGRFCQREVS 46

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (77), Expect = 7e-04
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 17 CHNGTCEDFGNSHRCHCMEGYTGSYCSIEIN 47
          C +GTC D   S  C C  G+ G +C  E++
Sbjct: 16 CGHGTCIDGIGSFSCDCRSGWEGRFCQREVS 46

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

 Score = 38.7 bits (90), Expect = 7e-06
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 46 INECESDPCQNGATCQDL-IGGYSCQCAR-GFQGQNCE 81
          +N C   PCQ+   C    +  Y C C R G+ G NC 
Sbjct: 2  VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCT 39

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

 Score = 31.3 bits (71), Expect = 0.004
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 84  VDDCKPNPCQNGGICHDL-INHFSCSCP 110
           V+ C   PCQ+ GIC    ++ + C C 
Sbjct: 2   VNPCCYYPCQHQGICVRFGLDRYQCDCT 29

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (87), Expect = 2e-05
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 49 CESDPCQNGATCQDLI--GGYSCQCARGFQGQNCELNVD 85
          C    C NG TCQ  +    + CQC  GF G++CE++  
Sbjct: 1  CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR 39

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (87), Expect = 2e-05
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 47 NECESDPCQNGATCQDL-IGGYSCQCAR-GFQGQNCE 81
          N C S+PCQN   C       Y C C R GF G+NC 
Sbjct: 2  NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 38

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 3e-05
 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 45 EINECESDPCQNGATCQDL--IGGYSCQCARGFQGQNCE 81
          E        C +   C  +  +  Y+C C  G+ G+ C+
Sbjct: 3  ECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ 41

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (85), Expect = 5e-05
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 45 EINECESDPCQNGATCQDL--IGGYSCQCARGFQGQNCE 81
                   C NG  C  +  +  Y+C C  G+ G  C+
Sbjct: 5  GCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.3 bits (71), Expect = 0.004
 Identities = 8/36 (22%), Positives = 16/36 (44%)

Query: 44 IEINECESDPCQNGATCQDLIGGYSCQCARGFQGQN 79
          ++++EC+         C +  G Y C+C  G+    
Sbjct: 3  VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAG 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	145
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.72
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.51
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.51
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.48
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.39
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.33
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.31
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.31
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.29
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	98.29
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.21
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.21
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.2
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.18
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.17
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.1
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.09
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	98.07
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.05
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.03
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.01
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	97.96
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.95
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.92
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	97.91
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	97.9
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	97.9
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.9
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	97.89
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	97.86
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.82
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.74
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	97.73
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	97.68
d1nt0a3	45	Mannose-binding protein associated serine protease	97.67
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	97.64
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	97.62
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	97.57
d1szba2	45	Mannose-binding protein associated serine protease	97.52
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	97.49
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	97.47
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	97.45
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	97.38
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	97.26
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	97.25
d1nt0a3	45	Mannose-binding protein associated serine protease	97.25
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	97.24
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	97.21
d1szba2	45	Mannose-binding protein associated serine protease	97.19
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	97.15
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.14
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	97.04
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	97.0
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	96.84
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	96.77
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	96.7
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	96.66
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	96.64
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.62
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	96.53
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	96.37
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	96.19
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	95.65
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	95.22
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	94.97
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	94.28
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	94.22
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	94.05
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	93.96
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	93.84
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	93.18
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	92.95
d1l3ya_	41	Integrin beta EGF-like domains {Human (Homo sapien	84.68

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.2e-08  Score=47.17  Aligned_cols=38  Identities=29%  Similarity=0.666  Sum_probs=28.9

Q ss_pred             ecCCCCCCCCCCCC-CEeeeCCCceeeecCCCcccCCCC
Q psy6349           6 VSSPGLKREALCHN-GTCEDFGNSHRCHCMEGYTGSYCS   43 (145)
Q Consensus         6 ~~~~~~~~~~~c~~-~~c~~~~~~~~C~c~~g~~~~~c~   43 (145)
                      ++++|....++|.+ +.|++..++|.|.|.+||.|..|+
T Consensus         2 DideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~G~~Ce   40 (42)
T d2vj3a1           2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCE   40 (42)
T ss_dssp             CCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTTSC
T ss_pred             CCccccCCCCCCCCCcEeECCCCCEEeECCCCCcCCCCc
Confidence            35667767778864 788888888888888888888774

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.1e-07  Score=42.99  Aligned_cols=35  Identities=51%  Similarity=1.250  Sum_probs=19.1

Q ss_pred             CCCCCCCCCCCCCeeeeCCCceEEeCCCCcccCCc
Q psy6349          46 INECESDPCQNGATCQDLIGGYSCQCARGFQGQNC   80 (145)
Q Consensus        46 ~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c   80 (145)
                      +++|.+.||.+++.|+...+.|.|.|.++|.|+.|
T Consensus         3 ~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~C   37 (39)
T d1edmb_           3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNC   37 (39)
T ss_dssp             CCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTS
T ss_pred             cccCCCCCCCCCcEEEcCCCCEEEECCCCCCCCCC
Confidence            34555555555555555555555555555555544

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.2e-07  Score=42.74  Aligned_cols=33  Identities=55%  Similarity=1.281  Sum_probs=15.0

Q ss_pred             CCCCCCCCCCCeeeeCCCceEEeCCCCcccCCc
Q psy6349          48 ECESDPCQNGATCQDLIGGYSCQCARGFQGQNC   80 (145)
Q Consensus        48 ~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c   80 (145)
                      +|.+.||.+++.|+...++|.|.|.++|.|+.|
T Consensus         3 ~C~~~PC~n~g~C~~~~~~y~C~C~~G~~G~~C   35 (39)
T d2vj3a2           3 ECVSNPCQNDATCLDQIGEFQCICMPGYEGVHC   35 (39)
T ss_dssp             TTTTCCCCSSCEEEECSSCEEEECCTTEESSSS
T ss_pred             CCcCCCCCCCCEEECCCCCEEEeCCCCCccCcC
Confidence            344444444444444444444444444444444

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.48  E-value=7.5e-08  Score=42.97  Aligned_cols=34  Identities=47%  Similarity=1.248  Sum_probs=17.8

Q ss_pred             CCCCCCCCCCCCeeeeCCCceEEeCCCCcccCCc
Q psy6349          47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNC   80 (145)
Q Consensus        47 ~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c   80 (145)
                      ++|.+.||.+++.|+.....|.|.|.++|.|+.|
T Consensus         3 d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~C   36 (37)
T d2c4fl1           3 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC   36 (37)
T ss_dssp             CGGGGCCCCTTCEEEEETTEEEEECCTTEESTTS
T ss_pred             ccCCCCCCCCCCEEECCCCCeEEECCCCCcCCCC
Confidence            4455555555555555555555555555555444

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=3.2e-07  Score=42.14  Aligned_cols=37  Identities=35%  Similarity=1.213  Sum_probs=25.7

Q ss_pred             cCCCCC--CCCCCCCCeeeeCCCceEEeCCCCcccCCcc
Q psy6349          45 EINECE--SDPCQNGATCQDLIGGYSCQCARGFQGQNCE   81 (145)
Q Consensus        45 ~~~~c~--~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~   81 (145)
                      ++++|.  +.||..++.|++..++|.|.|.+||.|+.|+
T Consensus         2 DideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~G~~Ce   40 (42)
T d2vj3a1           2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCE   40 (42)
T ss_dssp             CCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTTSC
T ss_pred             CCccccCCCCCCCCCcEeECCCCCEEeECCCCCcCCCCc
Confidence            455554  4567777777777777777777777777664

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=3.2e-07  Score=41.29  Aligned_cols=30  Identities=37%  Similarity=0.950  Sum_probs=16.1

Q ss_pred             CCCCCC-CEeeeCCCceeeecCCCcccCCCC
Q psy6349          14 EALCHN-GTCEDFGNSHRCHCMEGYTGSYCS   43 (145)
Q Consensus        14 ~~~c~~-~~c~~~~~~~~C~c~~g~~~~~c~   43 (145)
                      ..+|.| +.|++..+.|.|.|.+||.|..|+
T Consensus         5 ~~PC~ngg~C~~~~~~y~C~C~~G~~G~~Ce   35 (39)
T d1xkba1           5 TSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE   35 (39)
T ss_dssp             TCCCCSSCEECCCSSSCCEECCTTEETTTTC
T ss_pred             CCCCCCCcEEECCCCCEEEECCCCCCcCcCe
Confidence            445543 455555555555555555555553

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=2.5e-07  Score=42.78  Aligned_cols=36  Identities=25%  Similarity=0.528  Sum_probs=28.8

Q ss_pred             eecCCCCCCCCCCCCCEeeeCCCceeeecCCCcccC
Q psy6349           5 IVSSPGLKREALCHNGTCEDFGNSHRCHCMEGYTGS   40 (145)
Q Consensus         5 ~~~~~~~~~~~~c~~~~c~~~~~~~~C~c~~g~~~~   40 (145)
                      |++++|+...+.|.++.|+|+.|+|.|.|..||.+.
T Consensus         1 TDidEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~~~   36 (44)
T d1lmja1           1 TDIDECRISPDLCGRGQCVNTPGDFECKCDEGYESG   36 (44)
T ss_dssp             CCCCTTTTCSSTTTTSCEEEETTEEEECCCSSEEEC
T ss_pred             CcccccCCCCCCCCCCEeEcCCCCeEEeCCCCCccC
Confidence            467888877778877788888888889998888643

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=7.7e-07  Score=40.05  Aligned_cols=32  Identities=38%  Similarity=0.769  Sum_probs=28.1

Q ss_pred             CCCCCCCC-CEeeeCCCceeeecCCCcccCCCC
Q psy6349          12 KREALCHN-GTCEDFGNSHRCHCMEGYTGSYCS   43 (145)
Q Consensus        12 ~~~~~c~~-~~c~~~~~~~~C~c~~g~~~~~c~   43 (145)
                      +...+|.| +.|++..+.|.|.|.+||.|..|+
T Consensus         6 C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   38 (39)
T d1edmb_           6 CESNPCLNGGSCKDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             TTTCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred             CCCCCCCCCcEEEcCCCCEEEECCCCCCCCCCC
Confidence            35688976 799999999999999999999985

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=7.5e-07  Score=39.10  Aligned_cols=28  Identities=39%  Similarity=0.952  Sum_probs=12.2

Q ss_pred             CCCCC-CEeeeCCCceeeecCCCcccCCC
Q psy6349          15 ALCHN-GTCEDFGNSHRCHCMEGYTGSYC   42 (145)
Q Consensus        15 ~~c~~-~~c~~~~~~~~C~c~~g~~~~~c   42 (145)
                      .+|.| ++|++..+.|.|.|..+|.|..|
T Consensus         6 ~PC~ngg~C~~~~~~y~C~C~~g~~G~~C   34 (35)
T d2vj3a3           6 SPCLHNGRCLDKINEFQCECPTGFTGHLC   34 (35)
T ss_dssp             CCSTTTCEEEECSSCEEEECCTTEESSSS
T ss_pred             CCCCCCcEEECCCCCeEEECCCCCCCCCc
Confidence            34432 34444444444444444444443

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=3.7e-07  Score=42.95  Aligned_cols=33  Identities=33%  Similarity=0.746  Sum_probs=20.1

Q ss_pred             CCCCCCCCCEeeeCCCceeeecCCCcccCCCCc
Q psy6349          12 KREALCHNGTCEDFGNSHRCHCMEGYTGSYCSI   44 (145)
Q Consensus        12 ~~~~~c~~~~c~~~~~~~~C~c~~g~~~~~c~~   44 (145)
                      +..++|.||.|.+..+.|.|.|.+||.|..|+.
T Consensus        11 C~~~PC~nG~C~~~~~~y~C~C~~G~~G~~Ce~   43 (48)
T d1autl1          11 CASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQR   43 (48)
T ss_dssp             SSSTTTTSEEECCCSSCCCEEECTTEESTTSCE
T ss_pred             ccCCCCCCCEEECCCCCCeEeCCCCCcCCCccc
Confidence            344556566666665666666666666666643

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=7e-07  Score=40.91  Aligned_cols=25  Identities=32%  Similarity=0.709  Sum_probs=16.4

Q ss_pred             CCCCeeeeCCCceeEecCCCCCcCC
Q psy6349         119 CHNGTCEDFGNSHRCHCICWDDLRN  143 (145)
Q Consensus       119 C~~~~c~~~~g~~~c~c~~~~~~~~  143 (145)
                      |.++.|.|+.|+|+|.|++||.+.+
T Consensus        12 C~~~~C~Nt~Gsy~C~C~~Gy~l~~   36 (42)
T d1lmja2          12 CRGGVCHNTEGSYRCECPPGHQLSP   36 (42)
T ss_dssp             TTTSEEEEETTEEEEESCTTSCCCS
T ss_pred             CCCCEeECCCCCeEEeCCCCCeECc
Confidence            4345677777777777777776654

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=7.2e-07  Score=40.11  Aligned_cols=35  Identities=54%  Similarity=1.321  Sum_probs=31.5

Q ss_pred             CCCCCCCCCCeeeeCCCceEEeCCCCcccCCcccc
Q psy6349          49 CESDPCQNGATCQDLIGGYSCQCARGFQGQNCELN   83 (145)
Q Consensus        49 c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~~~   83 (145)
                      |.+.||.+++.|+...+.|.|.|.++|.|..|+..
T Consensus         3 C~~~PC~ngg~C~~~~~~y~C~C~~G~~G~~Cei~   37 (39)
T d1xkba1           3 CETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF   37 (39)
T ss_dssp             TTTCCCCSSCEECCCSSSCCEECCTTEETTTTCEE
T ss_pred             CCCCCCCCCcEEECCCCCEEEECCCCCCcCcCeEc
Confidence            66789999999999999999999999999999743

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.1e-07  Score=42.13  Aligned_cols=32  Identities=28%  Similarity=0.620  Sum_probs=26.2

Q ss_pred             cCCCCCCCCCCCCCEeeeCCCceeeecCCCcc
Q psy6349           7 SSPGLKREALCHNGTCEDFGNSHRCHCMEGYT   38 (145)
Q Consensus         7 ~~~~~~~~~~c~~~~c~~~~~~~~C~c~~g~~   38 (145)
                      +++|......|.++.|+|+.|+|+|.|.+||.
T Consensus         2 idEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~   33 (42)
T d1lmja2           2 IDECQRDPLLCRGGVCHNTEGSYRCECPPGHQ   33 (42)
T ss_dssp             CCHHHHCSSTTTTSEEEEETTEEEEESCTTSC
T ss_pred             ccccCCCCCCCCCCEeECCCCCeEEeCCCCCe
Confidence            45566666778778999999999999999986

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.7e-06  Score=38.86  Aligned_cols=33  Identities=42%  Similarity=0.976  Sum_probs=28.5

Q ss_pred             CCCCcCCCCCCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          84 VDDCKPNPCQNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        84 ~~~c~~~~~~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      +++|.+.+|.+++.|++..++|.|.|++||.+.
T Consensus         1 Id~C~~~PC~n~g~C~~~~~~y~C~C~~G~~G~   33 (39)
T d2vj3a2           1 VNECVSNPCQNDATCLDQIGEFQCICMPGYEGV   33 (39)
T ss_dssp             CCTTTTCCCCSSCEEEECSSCEEEECCTTEESS
T ss_pred             CcCCcCCCCCCCCEEECCCCCEEEeCCCCCccC
Confidence            457778889999999998899999999999885

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.8e-06  Score=37.81  Aligned_cols=35  Identities=40%  Similarity=1.115  Sum_probs=30.3

Q ss_pred             CCCCCCCCCCCCeeeeCCCceEEeCCCCcccCCcc
Q psy6349          47 NECESDPCQNGATCQDLIGGYSCQCARGFQGQNCE   81 (145)
Q Consensus        47 ~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~   81 (145)
                      ++|.+.||.+++.|+.....|.|.|..+|.|..|+
T Consensus         1 d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~CE   35 (35)
T d2vj3a3           1 DECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ   35 (35)
T ss_dssp             CTTTTCCSTTTCEEEECSSCEEEECCTTEESSSSC
T ss_pred             CCCCCCCCCCCcEEECCCCCeEEECCCCCCCCCcC
Confidence            03667899999999999999999999999998874

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=5.9e-07  Score=40.44  Aligned_cols=31  Identities=29%  Similarity=0.782  Sum_probs=17.3

Q ss_pred             CCCCCCC-CEeeeCCCceeeecCCCcccCCCC
Q psy6349          13 REALCHN-GTCEDFGNSHRCHCMEGYTGSYCS   43 (145)
Q Consensus        13 ~~~~c~~-~~c~~~~~~~~C~c~~g~~~~~c~   43 (145)
                      ...+|.| +.|++..+.|.|.|.+||.|..|+
T Consensus         5 ~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce   36 (39)
T d1g1ta2           5 TNTSCSGHGECVETINNYTCKCDPGFSGLKCE   36 (39)
T ss_dssp             CTTGGGGSEEEEEETTEEEEEECTTEESTTSC
T ss_pred             cCCcCCCCcEEECCCCCEEEeCCCCCcCcCcC
Confidence            3455543 456655555666666666666554

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.09  E-value=1.3e-06  Score=38.74  Aligned_cols=33  Identities=36%  Similarity=0.958  Sum_probs=27.0

Q ss_pred             CCCCcCCCCCCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          84 VDDCKPNPCQNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        84 ~~~c~~~~~~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      +++|...+|.+++.|++....|.|.|++||.+.
T Consensus         2 ~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~   34 (37)
T d2c4fl1           2 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR   34 (37)
T ss_dssp             CCGGGGCCCCTTCEEEEETTEEEEECCTTEEST
T ss_pred             cccCCCCCCCCCCEEECCCCCeEEECCCCCcCC
Confidence            467777888888888888888888888888874

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=5.1e-06  Score=37.69  Aligned_cols=34  Identities=38%  Similarity=0.901  Sum_probs=23.5

Q ss_pred             CCCCCCC-CEeeeC--CCceeeecCCCcccCCCCccC
Q psy6349          13 REALCHN-GTCEDF--GNSHRCHCMEGYTGSYCSIEI   46 (145)
Q Consensus        13 ~~~~c~~-~~c~~~--~~~~~C~c~~g~~~~~c~~~~   46 (145)
                      ...+|.| |.|++.  .+.|.|.|..||.|..|++++
T Consensus         2 ~~nPC~ngG~C~~~~~~~~y~C~C~~g~~G~~Ce~~~   38 (41)
T d1tpga1           2 SEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDT   38 (41)
T ss_dssp             SSCCSCTTCEEEEESSSSCEEEECCTTCBSSSCCBCS
T ss_pred             cCCCCCCCCEEecCCCCCCeEECCCCCCCCCCcCcCc
Confidence            3466765 688754  345788888888888886544

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=8.4e-07  Score=39.92  Aligned_cols=35  Identities=34%  Similarity=0.979  Sum_probs=31.0

Q ss_pred             CCCCCCCCCCeeeeCCCceEEeCCCCcccCCcccc
Q psy6349          49 CESDPCQNGATCQDLIGGYSCQCARGFQGQNCELN   83 (145)
Q Consensus        49 c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~~~   83 (145)
                      |.+.||.+++.|+...+.|.|.|.++|.|+.|+.+
T Consensus         4 C~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~~   38 (39)
T d1g1ta2           4 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQI   38 (39)
T ss_dssp             CCTTGGGGSEEEEEETTEEEEEECTTEESTTSCEE
T ss_pred             ccCCcCCCCcEEECCCCCEEEeCCCCCcCcCcCcc
Confidence            56678999999999999999999999999999743

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=6e-07  Score=41.36  Aligned_cols=33  Identities=27%  Similarity=0.563  Sum_probs=25.4

Q ss_pred             ecCCCCCCCCCCCCCEeeeCCCceeeecCCCcc
Q psy6349           6 VSSPGLKREALCHNGTCEDFGNSHRCHCMEGYT   38 (145)
Q Consensus         6 ~~~~~~~~~~~c~~~~c~~~~~~~~C~c~~g~~   38 (145)
                      +|++|......|.++.|+++.|+|.|.|.+||.
T Consensus         2 DinEC~~~~~~c~~~~C~Nt~Gsy~C~C~~Gy~   34 (43)
T d1uzka2           2 DIDECQELPGLCQGGKCINTFGSFQCRCPTGYY   34 (43)
T ss_dssp             ECCHHHHCGGGGBTSEEEECSSCEEEECCTTCC
T ss_pred             CcccccCCCCCcCCCEEECCCCCeEeECCCCCe
Confidence            355565566667667899999999999999886

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=2.5e-06  Score=39.17  Aligned_cols=22  Identities=27%  Similarity=0.461  Sum_probs=12.9

Q ss_pred             CeeeeCCCceeEecCCCCCcCC
Q psy6349         122 GTCEDFGNSHRCHCICWDDLRN  143 (145)
Q Consensus       122 ~~c~~~~g~~~c~c~~~~~~~~  143 (145)
                      +.|.|+.|+|+|.|++||.|..
T Consensus        16 ~~C~Nt~Gsy~C~C~~Gy~l~~   37 (43)
T d1uzka2          16 GKCINTFGSFQCRCPTGYYLNE   37 (43)
T ss_dssp             SEEEECSSCEEEECCTTCCBCT
T ss_pred             CEEECCCCCeEeECCCCCeECc
Confidence            4566666666666666665543

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=3.1e-06  Score=39.70  Aligned_cols=39  Identities=38%  Similarity=0.854  Sum_probs=31.9

Q ss_pred             cCCCCCCCCCCCCCeeeeCCCceEEeCCCCcccCCccccC
Q psy6349          45 EINECESDPCQNGATCQDLIGGYSCQCARGFQGQNCELNV   84 (145)
Q Consensus        45 ~~~~c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~~~~   84 (145)
                      ..++|.+.||.+ +.|....+.|.|.|..||.|..|+.++
T Consensus         7 ~~~~C~~~PC~n-G~C~~~~~~y~C~C~~G~~G~~Ce~~I   45 (48)
T d1autl1           7 LEHPCASLCCGH-GTCIDGIGSFSCDCRSGWEGRFCQREV   45 (48)
T ss_dssp             SCCSSSSTTTTS-EEECCCSSCCCEEECTTEESTTSCEEC
T ss_pred             CCCcccCCCCCC-CEEECCCCCCeEeCCCCCcCCCccccc
Confidence            346788889976 689888888999999999999887554

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.2e-06  Score=39.37  Aligned_cols=34  Identities=24%  Similarity=0.442  Sum_probs=21.8

Q ss_pred             eeecCCCCCCCCCCCCCEeeeCCCceeeecCCCcc
Q psy6349           4 LIVSSPGLKREALCHNGTCEDFGNSHRCHCMEGYT   38 (145)
Q Consensus         4 ~~~~~~~~~~~~~c~~~~c~~~~~~~~C~c~~g~~   38 (145)
                      |.++++|+.....+ ++.|.|..|+|.|.|++||.
T Consensus         2 CvDidEC~~~~~~~-~~~C~Nt~Gsy~C~C~~Gy~   35 (43)
T d1emoa1           2 AVDMDECKEPDVCK-HGQCINTDGSYRCECPFGYI   35 (43)
T ss_dssp             CCCCCSSSSTTSCS-SSCCCCCSSCCCCCCCTTEE
T ss_pred             CcceeccCCcCCCC-CCEeECCCCCeEeECCCCcc
Confidence            45666666544333 45677777777777777775

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.3e-06  Score=38.76  Aligned_cols=33  Identities=27%  Similarity=0.680  Sum_probs=17.4

Q ss_pred             cCCCCcCCCCCCCCEEeeCCCCeEeeCCCCCcc
Q psy6349          83 NVDDCKPNPCQNGGICHDLINHFSCSCPSGLKR  115 (145)
Q Consensus        83 ~~~~c~~~~~~~~~~c~~~~~~~~C~c~~g~~~  115 (145)
                      ++++|....+...+.|+|+.|+|.|.|++||.+
T Consensus         4 DidEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy~~   36 (43)
T d1emoa1           4 DMDECKEPDVCKHGQCINTDGSYRCECPFGYIL   36 (43)
T ss_dssp             CCCSSSSTTSCSSSCCCCCSSCCCCCCCTTEEE
T ss_pred             ceeccCCcCCCCCCEeECCCCCeEeECCCCccc
Confidence            445554433334445555555666666655554

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=2.2e-06  Score=38.65  Aligned_cols=24  Identities=21%  Similarity=0.700  Sum_probs=13.8

Q ss_pred             CC-CCeeeeCCCceeEecCCCCCcC
Q psy6349         119 CH-NGTCEDFGNSHRCHCICWDDLR  142 (145)
Q Consensus       119 C~-~~~c~~~~g~~~c~c~~~~~~~  142 (145)
                      |+ ++.|.|+.|+|.|.|++||.++
T Consensus         9 C~~~A~C~Nt~Gsy~C~C~~Gy~Gd   33 (40)
T d1gl4a2           9 CSVHAECRDYATGFCCRCVANYTGN   33 (40)
T ss_dssp             SCTTEEEEECSSCEEEEECTTEEEC
T ss_pred             CCCCCEeecCCCCeEeECCCCCcCC
Confidence            44 4556666666666666666544

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=3.3e-06  Score=38.10  Aligned_cols=31  Identities=26%  Similarity=0.769  Sum_probs=17.3

Q ss_pred             CCCCCCC-CEeeeCCCceeeecCCCcccCCCC
Q psy6349          13 REALCHN-GTCEDFGNSHRCHCMEGYTGSYCS   43 (145)
Q Consensus        13 ~~~~c~~-~~c~~~~~~~~C~c~~g~~~~~c~   43 (145)
                      ...+|.| |.|+...+.|.|.|.++|.|..|+
T Consensus         5 ~~~pC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   36 (40)
T d1g1sa2           5 QDMSCSKQGECLETIGNYTCSCYPGFYGPECE   36 (40)
T ss_dssp             CTTGGGGSEEEEECSSSEEEEECTTEESTTSC
T ss_pred             cCCcCCCCcEEECCCCCeEEeCCCCccCCCCC
Confidence            4455543 456655555666666666665553

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1.6e-05  Score=35.99  Aligned_cols=36  Identities=42%  Similarity=1.119  Sum_probs=27.1

Q ss_pred             CCCCCCCCCCeeeeC--CCceEEeCCCCcccCCccccC
Q psy6349          49 CESDPCQNGATCQDL--IGGYSCQCARGFQGQNCELNV   84 (145)
Q Consensus        49 c~~~~c~~~~~c~~~--~~~~~c~c~~g~~g~~c~~~~   84 (145)
                      |.+.||.+++.|+..  ...|.|.|..+|.|..|+.++
T Consensus         1 C~~nPC~ngG~C~~~~~~~~y~C~C~~g~~G~~Ce~~~   38 (41)
T d1tpga1           1 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDT   38 (41)
T ss_dssp             CSSCCSCTTCEEEEESSSSCEEEECCTTCBSSSCCBCS
T ss_pred             CcCCCCCCCCEEecCCCCCCeEECCCCCCCCCCcCcCc
Confidence            456788888888754  356888999998888887544

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=3.3e-06  Score=38.83  Aligned_cols=21  Identities=29%  Similarity=0.447  Sum_probs=10.6

Q ss_pred             CeeeeCCCceeEecCCCCCcC
Q psy6349         122 GTCEDFGNSHRCHCICWDDLR  142 (145)
Q Consensus       122 ~~c~~~~g~~~c~c~~~~~~~  142 (145)
                      +.|.|+.|+|+|.|++||.|.
T Consensus        15 ~~C~Nt~G~y~C~C~~Gy~l~   35 (43)
T d1uzka1          15 GNCVNTPGSYICDCPPDFELN   35 (43)
T ss_dssp             SEEEEETTEEEEECCTTCEEC
T ss_pred             CEeECCCCCEEEecCCCCEEC
Confidence            345555555555555555444

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=3.7e-06  Score=37.95  Aligned_cols=34  Identities=38%  Similarity=1.067  Sum_probs=30.4

Q ss_pred             CCCCCCCCCCeeeeCCCceEEeCCCCcccCCccc
Q psy6349          49 CESDPCQNGATCQDLIGGYSCQCARGFQGQNCEL   82 (145)
Q Consensus        49 c~~~~c~~~~~c~~~~~~~~c~c~~g~~g~~c~~   82 (145)
                      |.+.||.+++.|+...+.|.|.|.++|.|+.|+.
T Consensus         4 C~~~pC~ngg~C~~~~~~y~C~C~~g~~G~~Ce~   37 (40)
T d1g1sa2           4 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECEY   37 (40)
T ss_dssp             CCTTGGGGSEEEEECSSSEEEEECTTEESTTSCE
T ss_pred             ccCCcCCCCcEEECCCCCeEEeCCCCccCCCCCC
Confidence            5567899999999999999999999999999974

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=6.5e-06  Score=36.94  Aligned_cols=21  Identities=24%  Similarity=0.555  Sum_probs=15.7

Q ss_pred             CeeeeCCCceeEecCCCCCcC
Q psy6349         122 GTCEDFGNSHRCHCICWDDLR  142 (145)
Q Consensus       122 ~~c~~~~g~~~c~c~~~~~~~  142 (145)
                      ..|.|+.|+|+|.|++||+|.
T Consensus        13 ~~C~N~~Gsy~C~C~~Gy~l~   33 (40)
T d1dx5i3          13 GVCHNLPGTFECICGPDSALA   33 (40)
T ss_dssp             SEEEECSSSEEEEECSSSSCE
T ss_pred             CEeeCCCCCeEeECCCCCeeC
Confidence            477777777777777777775

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=9e-06  Score=37.28  Aligned_cols=34  Identities=21%  Similarity=0.605  Sum_probs=24.8

Q ss_pred             cCCCCcCCCCCCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          83 NVDDCKPNPCQNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        83 ~~~~c~~~~~~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      ++++|........+.|+++.|+|.|.|++||...
T Consensus         2 DidEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~l~   35 (43)
T d1uzka1           2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELN   35 (43)
T ss_dssp             CCCGGGSTTSSBTSEEEEETTEEEEECCTTCEEC
T ss_pred             CccccCCCCcCcCCEeECCCCCEEEecCCCCEEC
Confidence            4566654444456788888899999999888764

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=4.7e-06  Score=38.34  Aligned_cols=21  Identities=29%  Similarity=0.792  Sum_probs=11.6

Q ss_pred             CEEeeCCCCeEeeCCCCCccC
Q psy6349          96 GICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        96 ~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      +.|+|+.|+|.|.|++||.+.
T Consensus        16 ~~C~Nt~Gsy~C~C~~Gy~~~   36 (44)
T d1lmja1          16 GQCVNTPGDFECKCDEGYESG   36 (44)
T ss_dssp             SCEEEETTEEEECCCSSEEEC
T ss_pred             CEeEcCCCCeEEeCCCCCccC
Confidence            345555555555555555543

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=7.7e-06  Score=39.33  Aligned_cols=22  Identities=18%  Similarity=0.428  Sum_probs=13.1

Q ss_pred             CeeeeCCCceeEecCCCCCcCC
Q psy6349         122 GTCEDFGNSHRCHCICWDDLRN  143 (145)
Q Consensus       122 ~~c~~~~g~~~c~c~~~~~~~~  143 (145)
                      ..|.|+.|+|+|.|++||+|..
T Consensus        24 ~~C~Nt~GsY~C~C~~Gy~l~~   45 (53)
T d1apqa_          24 HLCHNYVGGYFCSCRPGYELQE   45 (53)
T ss_dssp             SEEEEETTEEEEECSTTCEECT
T ss_pred             CEeEcCCCCeEeECCCCCeECC
Confidence            3566666666666666665544

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=97.68  E-value=2.3e-05  Score=35.62  Aligned_cols=35  Identities=40%  Similarity=1.078  Sum_probs=18.3

Q ss_pred             CCCCCCCCCCCCeeeeC-CCceEEeCCC-CcccCCcc
Q psy6349          47 NECESDPCQNGATCQDL-IGGYSCQCAR-GFQGQNCE   81 (145)
Q Consensus        47 ~~c~~~~c~~~~~c~~~-~~~~~c~c~~-g~~g~~c~   81 (145)
                      +.|.+.||.+++.|+.. .+.|.|.|.. +|.|..|+
T Consensus         3 d~C~~nPC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce   39 (42)
T d1q4ga2           3 NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCT   39 (42)
T ss_dssp             CGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTC
T ss_pred             ccCcCCCCCCCCEeeeCCCCCEEEECCCCCcCCcCcC
Confidence            44555555555555532 3455555543 55555553

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.67  E-value=8.5e-06  Score=37.74  Aligned_cols=22  Identities=18%  Similarity=0.356  Sum_probs=13.4

Q ss_pred             CeeeeCCCceeEecCCCCCcCC
Q psy6349         122 GTCEDFGNSHRCHCICWDDLRN  143 (145)
Q Consensus       122 ~~c~~~~g~~~c~c~~~~~~~~  143 (145)
                      ..|.|+.|+|+|.|++||+|..
T Consensus        16 ~~C~Nt~gsy~C~C~~Gy~L~~   37 (45)
T d1nt0a3          16 HYCHNYLGGYYCSCRVGYILHQ   37 (45)
T ss_dssp             SEEEEETTEEEEECCTTEEECT
T ss_pred             CEeecCCCCEEEeCCCCCEECC
Confidence            3566666666666666665544

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=3.9e-06  Score=37.80  Aligned_cols=27  Identities=30%  Similarity=0.919  Sum_probs=21.6

Q ss_pred             CCCCCC-CCEeeeCCCceeeecCCCccc
Q psy6349          13 REALCH-NGTCEDFGNSHRCHCMEGYTG   39 (145)
Q Consensus        13 ~~~~c~-~~~c~~~~~~~~C~c~~g~~~   39 (145)
                      ..+.|. ++.|.+..++|.|.|.+||.|
T Consensus         5 ~~~~C~~~A~C~Nt~Gsy~C~C~~Gy~G   32 (40)
T d1gl4a2           5 NRHQCSVHAECRDYATGFCCRCVANYTG   32 (40)
T ss_dssp             HGGGSCTTEEEEECSSCEEEEECTTEEE
T ss_pred             CCCCCCCCCEeecCCCCeEeECCCCCcC
Confidence            446675 578999999999999999984

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=1.4e-05  Score=36.36  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=17.4

Q ss_pred             CeeeeCCCceeEecCCCCCcCCC
Q psy6349         122 GTCEDFGNSHRCHCICWDDLRNS  144 (145)
Q Consensus       122 ~~c~~~~g~~~c~c~~~~~~~~~  144 (145)
                      ..|.++.|+|+|.|++||.|..+
T Consensus        13 ~~C~n~~Gsy~C~C~~Gy~L~~d   35 (42)
T d1nzia2          13 HFCNNFIGGYFCSCPPEYFLHDD   35 (42)
T ss_dssp             SEEEEETTEEEEECCTTCEECTT
T ss_pred             CEeecCCCCEEEeCCCCCEECCC
Confidence            37788888888888888877654

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=1.1e-05  Score=36.60  Aligned_cols=23  Identities=17%  Similarity=0.371  Sum_probs=15.8

Q ss_pred             CeeeeCCCceeEecCCCCCcCCC
Q psy6349         122 GTCEDFGNSHRCHCICWDDLRNS  144 (145)
Q Consensus       122 ~~c~~~~g~~~c~c~~~~~~~~~  144 (145)
                      ..|.|+.|+|+|.|++||+|.++
T Consensus        12 ~~C~n~~Gsy~C~C~~Gy~L~~d   34 (41)
T d1i0ua2          12 QLCVNLEGGYKCQCEEGFQLDPH   34 (41)
T ss_dssp             SCEECSSSCCEECCCTTEEECTT
T ss_pred             CEeECCCCCEEeECCCCCeECCC
Confidence            36777777777777777776543

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=1.8e-05  Score=36.57  Aligned_cols=21  Identities=19%  Similarity=0.387  Sum_probs=12.0

Q ss_pred             eeeeCCCceeEecCCCCCcCC
Q psy6349         123 TCEDFGNSHRCHCICWDDLRN  143 (145)
Q Consensus       123 ~c~~~~g~~~c~c~~~~~~~~  143 (145)
                      .|.|+.|+|+|.|++||.|..
T Consensus        17 ~C~Nt~Gsy~C~C~~Gy~l~~   37 (45)
T d1szba2          17 HCHNHLGGFYCSCRAGYVLHR   37 (45)
T ss_dssp             EEEEETTEEEEECCTTEEECT
T ss_pred             CCccCCCCeEEECCCCCeECC
Confidence            555555555566655555543

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.49  E-value=8.1e-05  Score=33.54  Aligned_cols=34  Identities=44%  Similarity=1.124  Sum_probs=17.8

Q ss_pred             CCCCCCCCCCCeeeeC-CCceEEeCC-CCcccCCcc
Q psy6349          48 ECESDPCQNGATCQDL-IGGYSCQCA-RGFQGQNCE   81 (145)
Q Consensus        48 ~c~~~~c~~~~~c~~~-~~~~~c~c~-~g~~g~~c~   81 (145)
                      .|.+.||.+++.|+.. .+.|.|.|. ++|.|..|+
T Consensus         3 ~C~~~PC~ngG~C~~~~~~~y~C~C~~~gy~G~~Ce   38 (41)
T d1cvua2           3 PCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT   38 (41)
T ss_dssp             TTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTC
T ss_pred             cCcCCCCCCCCEEEECCCCCEEEeCcCCCcCCcCcC
Confidence            3455555555555542 345556664 355555553

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=2.5e-05  Score=34.96  Aligned_cols=23  Identities=30%  Similarity=0.755  Sum_probs=19.4

Q ss_pred             CCCEEeeCCCCeEeeCCCCCccC
Q psy6349          94 NGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        94 ~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      ..+.|+++.|+|+|.|++||.+.
T Consensus        11 C~~~C~N~~Gsy~C~C~~Gy~l~   33 (40)
T d1dx5i3          11 CSGVCHNLPGTFECICGPDSALA   33 (40)
T ss_dssp             CSSEEEECSSSEEEEECSSSSCE
T ss_pred             ccCEeeCCCCCeEeECCCCCeeC
Confidence            35689999999999999999764

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=5.2e-05  Score=33.98  Aligned_cols=21  Identities=24%  Similarity=0.369  Sum_probs=13.4

Q ss_pred             eeeeCCCceeEecCCCCCcCC
Q psy6349         123 TCEDFGNSHRCHCICWDDLRN  143 (145)
Q Consensus       123 ~c~~~~g~~~c~c~~~~~~~~  143 (145)
                      .|.++.|+|+|.|++||.|.+
T Consensus        15 ~C~n~~g~~~C~C~~Gy~L~d   35 (40)
T d3bpse1          15 VCNDLKIGYECLCPDGFQLVA   35 (40)
T ss_dssp             EEEECSSSEEEECCTTCCEET
T ss_pred             EEEcCCCCEEEECCCCCEECC
Confidence            566666666666666666643

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00018  Score=35.60  Aligned_cols=37  Identities=27%  Similarity=0.671  Sum_probs=26.8

Q ss_pred             CCCCCCC-CEee-----eCCCceeeecCCCcccCCCCccCCCC
Q psy6349          13 REALCHN-GTCE-----DFGNSHRCHCMEGYTGSYCSIEINEC   49 (145)
Q Consensus        13 ~~~~c~~-~~c~-----~~~~~~~C~c~~g~~~~~c~~~~~~c   49 (145)
                      ...+|.| |.|.     +..+.|.|.|..||.|..|+..+...
T Consensus        10 ~~~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~Ce~~~~~~   52 (63)
T d1haea_          10 EKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMK   52 (63)
T ss_dssp             HHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCSS
T ss_pred             cCCcCCCCCEEeecccccCCCCEEeECCCCCCCCCcCCCCCcc
Confidence            3467876 7895     33457899999999999997544443

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=0.00021  Score=32.08  Aligned_cols=31  Identities=29%  Similarity=0.804  Sum_probs=25.3

Q ss_pred             CCCCCCC-CEeeeC-CCceeeecC-CCcccCCCC
Q psy6349          13 REALCHN-GTCEDF-GNSHRCHCM-EGYTGSYCS   43 (145)
Q Consensus        13 ~~~~c~~-~~c~~~-~~~~~C~c~-~g~~~~~c~   43 (145)
                      ...+|.| |+|++. .+.|.|.|. .+|.|..|+
T Consensus         5 ~~~PC~ngG~C~~~~~~~y~C~C~~~gy~G~~Ce   38 (41)
T d1cvua2           5 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT   38 (41)
T ss_dssp             TTCCCCTTCEEEEEETTEEEEECTTSSEETTTTC
T ss_pred             cCCCCCCCCEEEECCCCCEEEeCcCCCcCCcCcC
Confidence            5578976 799865 578999996 699999996

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00015  Score=35.93  Aligned_cols=41  Identities=37%  Similarity=0.676  Sum_probs=32.0

Q ss_pred             CCCCCCCCCCCCeee-----eCCCceEEeCCCCcccCCccccCCCC
Q psy6349          47 NECESDPCQNGATCQ-----DLIGGYSCQCARGFQGQNCELNVDDC   87 (145)
Q Consensus        47 ~~c~~~~c~~~~~c~-----~~~~~~~c~c~~g~~g~~c~~~~~~c   87 (145)
                      ++|...||.+++.|.     ...+.|.|.|..+|.|..|+..+...
T Consensus         7 ~ec~~~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~Ce~~~~~~   52 (63)
T d1haea_           7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMK   52 (63)
T ss_dssp             CHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCSS
T ss_pred             CCCcCCcCCCCCEEeecccccCCCCEEeECCCCCCCCCcCCCCCcc
Confidence            556678899999995     34568999999999999998655443

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.25  E-value=0.00011  Score=33.76  Aligned_cols=24  Identities=25%  Similarity=0.649  Sum_probs=20.3

Q ss_pred             CCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          93 QNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        93 ~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      ...+.|+++.++|+|.|++||...
T Consensus        13 ~C~~~C~Nt~gsy~C~C~~Gy~L~   36 (45)
T d1nt0a3          13 PCDHYCHNYLGGYYCSCRVGYILH   36 (45)
T ss_dssp             CCSSEEEEETTEEEEECCTTEEEC
T ss_pred             CCCCEeecCCCCEEEeCCCCCEEC
Confidence            346689999999999999999864

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00014  Score=32.53  Aligned_cols=32  Identities=28%  Similarity=0.721  Sum_probs=23.9

Q ss_pred             CCCcCCCCCCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          85 DDCKPNPCQNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        85 ~~c~~~~~~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      ++|........+.|+++.++|.|.|++||...
T Consensus         3 neC~~~nggC~h~C~n~~g~~~C~C~~Gy~L~   34 (40)
T d3bpse1           3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV   34 (40)
T ss_dssp             CGGGTGGGGCSSEEEECSSSEEEECCTTCCEE
T ss_pred             ccCCCCCCCCcCEEEcCCCCEEEECCCCCEEC
Confidence            45544444456789999999999999999763

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00026  Score=33.72  Aligned_cols=18  Identities=28%  Similarity=0.831  Sum_probs=12.3

Q ss_pred             EeeeCCCceeeecCCCcc
Q psy6349          21 TCEDFGNSHRCHCMEGYT   38 (145)
Q Consensus        21 ~c~~~~~~~~C~c~~g~~   38 (145)
                      .|+|+.|+|+|.|..||.
T Consensus        25 ~C~Nt~GsY~C~C~~Gy~   42 (53)
T d1apqa_          25 LCHNYVGGYFCSCRPGYE   42 (53)
T ss_dssp             EEEEETTEEEEECSTTCE
T ss_pred             EeEcCCCCeEeECCCCCe
Confidence            567777777777776665

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.0002  Score=32.89  Aligned_cols=24  Identities=29%  Similarity=0.665  Sum_probs=20.1

Q ss_pred             CCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          93 QNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        93 ~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      ...+.|+++.++|.|.|++||...
T Consensus        13 ~C~~~C~Nt~Gsy~C~C~~Gy~l~   36 (45)
T d1szba2          13 TCDHHCHNHLGGFYCSCRAGYVLH   36 (45)
T ss_dssp             SSSSEEEEETTEEEEECCTTEEEC
T ss_pred             CCCCCCccCCCCeEEECCCCCeEC
Confidence            346689999999999999999864

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00019  Score=32.26  Aligned_cols=24  Identities=21%  Similarity=0.710  Sum_probs=19.7

Q ss_pred             CCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          93 QNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        93 ~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      ...+.|+++.|+|+|.|++||...
T Consensus         9 ~C~~~C~n~~Gsy~C~C~~Gy~L~   32 (41)
T d1i0ua2           9 TCSQLCVNLEGGYKCQCEEGFQLD   32 (41)
T ss_dssp             SCSSCEECSSSCCEECCCTTEEEC
T ss_pred             CCCCEeECCCCCEEeECCCCCeEC
Confidence            345689999999999999999864

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00019  Score=30.51  Aligned_cols=24  Identities=29%  Similarity=0.600  Sum_probs=20.6

Q ss_pred             CCCCCCeeeeCCCceeEecCCCCC
Q psy6349         117 ALCHNGTCEDFGNSHRCHCICWDD  140 (145)
Q Consensus       117 ~~C~~~~c~~~~g~~~c~c~~~~~  140 (145)
                      .+|.++.|.|.-|+|.|.|.+||.
T Consensus         8 npCGnGTCtNviGgFec~C~~GFe   31 (39)
T d1emoa2           8 NPCGNGTCKNVIGGFECTCEEGFE   31 (39)
T ss_dssp             CSSSSSCEEECSSSEEECCSSSSC
T ss_pred             CccCCceeeecccceEEeecCCcC
Confidence            467788999999999999999885

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.0018  Score=30.64  Aligned_cols=32  Identities=34%  Similarity=0.888  Sum_probs=22.7

Q ss_pred             CCCCCCC-CEeeeC--CCceeeecCCCcccCCCCc
Q psy6349          13 REALCHN-GTCEDF--GNSHRCHCMEGYTGSYCSI   44 (145)
Q Consensus        13 ~~~~c~~-~~c~~~--~~~~~C~c~~g~~~~~c~~   44 (145)
                      ...+|.| |.|...  ...|.|.|..+|.|..|+.
T Consensus        10 ~~~~C~NgG~C~~~~~~~~~~C~C~~gy~G~~Ce~   44 (53)
T d3egfa_          10 YDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQT   44 (53)
T ss_dssp             SSCCSCSSCEEEEESSSSCEEEECCTTCCSSSSCC
T ss_pred             CCCCCCCCcEeeccCCCCCeEeECCCCCcCCCCcc
Confidence            4456776 788743  2467888888888888863

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=97.00  E-value=0.00029  Score=31.79  Aligned_cols=33  Identities=33%  Similarity=0.933  Sum_probs=26.2

Q ss_pred             CCCCcCCCCCCCCEEeeC-CCCeEeeCCC-CCccC
Q psy6349          84 VDDCKPNPCQNGGICHDL-INHFSCSCPS-GLKRE  116 (145)
Q Consensus        84 ~~~c~~~~~~~~~~c~~~-~~~~~C~c~~-g~~~~  116 (145)
                      ++.|...+|.+++.|+.. .+.|.|.|+. ||.+.
T Consensus         2 id~C~~nPC~ngG~C~~~~~~~y~C~C~~~G~~G~   36 (42)
T d1q4ga2           2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGP   36 (42)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETT
T ss_pred             CccCcCCCCCCCCEeeeCCCCCEEEECCCCCcCCc
Confidence            456777889999999864 5779999976 88875

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00078  Score=30.30  Aligned_cols=24  Identities=25%  Similarity=0.660  Sum_probs=20.1

Q ss_pred             CCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          93 QNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        93 ~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      ...+.|+++.++|+|.|++||.+.
T Consensus        10 ~C~~~C~n~~Gsy~C~C~~Gy~L~   33 (42)
T d1nzia2          10 PCSHFCNNFIGGYFCSCPPEYFLH   33 (42)
T ss_dssp             CSSSEEEEETTEEEEECCTTCEEC
T ss_pred             CCCCEeecCCCCEEEeCCCCCEEC
Confidence            345689999999999999999864

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00034  Score=32.83  Aligned_cols=21  Identities=24%  Similarity=0.358  Sum_probs=12.8

Q ss_pred             eeeeCCCceeEecCCCCCcCC
Q psy6349         123 TCEDFGNSHRCHCICWDDLRN  143 (145)
Q Consensus       123 ~c~~~~g~~~c~c~~~~~~~~  143 (145)
                      .|.++.++|+|.|++||+|..
T Consensus        12 ~C~~~~g~~~C~C~~Gy~L~~   32 (50)
T d1autl2          12 YCLEEVGWRRCSCAPGYKLGD   32 (50)
T ss_dssp             EEEECSSSEEEECCTTEEECT
T ss_pred             EeecCCCCeEEECCCCCEECC
Confidence            556666666666666666654

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00031  Score=33.13  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=14.6

Q ss_pred             eeeeCCCceeEecCCCCCcCCC
Q psy6349         123 TCEDFGNSHRCHCICWDDLRNS  144 (145)
Q Consensus       123 ~c~~~~g~~~c~c~~~~~~~~~  144 (145)
                      .|.++.++|+|.|+.||+|.++
T Consensus        13 ~C~n~~g~~~C~C~~Gy~L~~D   34 (51)
T d2p3ua1          13 FCHEEQNSVVCSCARGYTLADN   34 (51)
T ss_dssp             EEEEETTEEEEECCTTEEECTT
T ss_pred             EeecCCCCeEeEcCCCCEECCC
Confidence            5666667777777777766543

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.66  E-value=0.0022  Score=30.34  Aligned_cols=35  Identities=29%  Similarity=0.863  Sum_probs=25.7

Q ss_pred             CCCCCCCCCCCCeeee--CCCceEEeCCCCcccCCcc
Q psy6349          47 NECESDPCQNGATCQD--LIGGYSCQCARGFQGQNCE   81 (145)
Q Consensus        47 ~~c~~~~c~~~~~c~~--~~~~~~c~c~~g~~g~~c~   81 (145)
                      +.+...+|.+++.|..  ....+.|.|..+|.|..|+
T Consensus         7 ~~c~~~~C~NgG~C~~~~~~~~~~C~C~~gy~G~~Ce   43 (53)
T d3egfa_           7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ   43 (53)
T ss_dssp             CTTSSCCSCSSCEEEEESSSSCEEEECCTTCCSSSSC
T ss_pred             CCCCCCCCCCCcEeeccCCCCCeEeECCCCCcCCCCc
Confidence            3455567888888864  3457888888888888886

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00071  Score=31.42  Aligned_cols=31  Identities=29%  Similarity=0.843  Sum_probs=22.9

Q ss_pred             CCCCCCC-CEeeeC--CCceeeecCCCcccCCCC
Q psy6349          13 REALCHN-GTCEDF--GNSHRCHCMEGYTGSYCS   43 (145)
Q Consensus        13 ~~~~c~~-~~c~~~--~~~~~C~c~~g~~~~~c~   43 (145)
                      ...+|.| |.|...  ...|.|.|..+|+|.+|+
T Consensus         8 ~~~~C~ngG~C~~~~~~~~~~C~C~~gy~G~~Ce   41 (48)
T d1nqlb_           8 HDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ   41 (48)
T ss_dssp             TCCEECTTCEEEEETTTTEEEEEECTTEESTTSC
T ss_pred             CCCCCCCCcEEeeeCCCCCeEEeCCCCcccCCCC
Confidence            3456876 788743  346889999999998886

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00093  Score=28.35  Aligned_cols=24  Identities=38%  Similarity=0.942  Sum_probs=21.1

Q ss_pred             CCCCCCEeeeCCCceeeecCCCcc
Q psy6349          15 ALCHNGTCEDFGNSHRCHCMEGYT   38 (145)
Q Consensus        15 ~~c~~~~c~~~~~~~~C~c~~g~~   38 (145)
                      ++|-++.|.+..|.|.|.|..||.
T Consensus         8 npCGnGTCtNviGgFec~C~~GFe   31 (39)
T d1emoa2           8 NPCGNGTCKNVIGGFECTCEEGFE   31 (39)
T ss_dssp             CSSSSSCEEECSSSEEECCSSSSC
T ss_pred             CccCCceeeecccceEEeecCCcC
Confidence            678789999999999999998885

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.0015  Score=29.97  Aligned_cols=31  Identities=32%  Similarity=0.727  Sum_probs=23.4

Q ss_pred             CCCCCCCCEee--eCCCceeeecCCCcccCCCC
Q psy6349          13 REALCHNGTCE--DFGNSHRCHCMEGYTGSYCS   43 (145)
Q Consensus        13 ~~~~c~~~~c~--~~~~~~~C~c~~g~~~~~c~   43 (145)
                      ....|.||.|.  .....+.|.|..+|.|.+|+
T Consensus        10 ~~~yC~nG~C~~~~~~~~~~C~C~~gY~G~RCe   42 (46)
T d1k36a_          10 MNGYCLHGQCIYLVDMSQNYCRCEVGYTGVRCE   42 (46)
T ss_dssp             CCSSCSSEEEEEETTTTEEEEEECTTCSSTTSC
T ss_pred             CCCcCcCCEEEEeCCCCccEeECCCCceecCce
Confidence            34578888875  33456889999999999885

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0014  Score=30.34  Aligned_cols=35  Identities=23%  Similarity=0.730  Sum_probs=26.0

Q ss_pred             CCCCCCCCCCCCeeee--CCCceEEeCCCCcccCCcc
Q psy6349          47 NECESDPCQNGATCQD--LIGGYSCQCARGFQGQNCE   81 (145)
Q Consensus        47 ~~c~~~~c~~~~~c~~--~~~~~~c~c~~g~~g~~c~   81 (145)
                      +.|...+|.+++.|..  ....+.|.|..+|.|..|+
T Consensus         5 ~~c~~~~C~ngG~C~~~~~~~~~~C~C~~gy~G~~Ce   41 (48)
T d1nqlb_           5 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ   41 (48)
T ss_dssp             CSTTCCEECTTCEEEEETTTTEEEEEECTTEESTTSC
T ss_pred             CCCCCCCCCCCcEEeeeCCCCCeEEeCCCCcccCCCC
Confidence            3445567888888864  3457889999999988886

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.19  E-value=0.00037  Score=32.86  Aligned_cols=22  Identities=23%  Similarity=0.425  Sum_probs=15.0

Q ss_pred             eeeeCCCceeEecCCCCCcCCC
Q psy6349         123 TCEDFGNSHRCHCICWDDLRNS  144 (145)
Q Consensus       123 ~c~~~~g~~~c~c~~~~~~~~~  144 (145)
                      .|.++.++|+|.|++||+|.++
T Consensus        11 ~C~~~~~~~~C~C~~Gy~L~~D   32 (51)
T d1kigl_          11 FCREERSEVRCSCAHGYVLGDD   32 (51)
T ss_dssp             CCCEETTEECCCCCTTEEECTT
T ss_pred             EeEcCCCcEEeEcCCCCEECCC
Confidence            4666677777777777776654

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0028  Score=29.58  Aligned_cols=19  Identities=16%  Similarity=0.144  Sum_probs=13.2

Q ss_pred             eCCCceeEecCCCCCcCCC
Q psy6349         126 DFGNSHRCHCICWDDLRNS  144 (145)
Q Consensus       126 ~~~g~~~c~c~~~~~~~~~  144 (145)
                      +..++|+|.|+.||+|..+
T Consensus        26 n~~~~y~C~C~~G~~L~~D   44 (50)
T d1ijqa2          26 PHSPKFTCACPDGMLLARD   44 (50)
T ss_dssp             TTCCSEEEECCTTCEECTT
T ss_pred             cCCCCEEEeCCCCCEECCC
Confidence            3446777888888877654

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.0089  Score=27.76  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=20.3

Q ss_pred             CCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          93 QNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        93 ~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      ...+.|+++.++|+|.|++||.+.
T Consensus         8 gC~~~C~~~~g~~~C~C~~Gy~L~   31 (50)
T d1autl2           8 GCTHYCLEEVGWRRCSCAPGYKLG   31 (50)
T ss_dssp             GCSSEEEECSSSEEEECCTTEEEC
T ss_pred             CcccEeecCCCCeEEECCCCCEEC
Confidence            345689999999999999999875

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.0058  Score=27.11  Aligned_cols=29  Identities=31%  Similarity=0.802  Sum_probs=22.0

Q ss_pred             CCCCCCEeee--CCCceeeecCCCcccCCCC
Q psy6349          15 ALCHNGTCED--FGNSHRCHCMEGYTGSYCS   43 (145)
Q Consensus        15 ~~c~~~~c~~--~~~~~~C~c~~g~~~~~c~   43 (145)
                      .-|.||.|.-  ......|.|..+|+|.+|+
T Consensus         8 ~yCihG~C~~i~~l~~~~C~C~~gY~G~RCq   38 (41)
T d1xdtr_           8 DFCIHGECKYVKELRAPSCICHPGYHGERCH   38 (41)
T ss_dssp             TCCSSEEECCBGGGTBCCEEECTTEESTTCC
T ss_pred             CEeECcEEeecCcCCCceeECCCCCeecCcc
Confidence            4577788863  3446689999999999885

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.28  E-value=0.0097  Score=27.75  Aligned_cols=24  Identities=29%  Similarity=0.656  Sum_probs=20.1

Q ss_pred             CCCCEEeeCCCCeEeeCCCCCccC
Q psy6349          93 QNGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        93 ~~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      ...+.|+++.++|+|.|++||...
T Consensus         9 gC~h~C~n~~g~~~C~C~~Gy~L~   32 (51)
T d2p3ua1           9 DCDQFCHEEQNSVVCSCARGYTLA   32 (51)
T ss_dssp             GCSSEEEEETTEEEEECCTTEEEC
T ss_pred             CcccEeecCCCCeEeEcCCCCEEC
Confidence            345689999999999999999875

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.22  E-value=0.021  Score=26.29  Aligned_cols=30  Identities=30%  Similarity=0.706  Sum_probs=21.4

Q ss_pred             CCCCCCCE-ee-eCCCceeeecCCCcccCCCC
Q psy6349          14 EALCHNGT-CE-DFGNSHRCHCMEGYTGSYCS   43 (145)
Q Consensus        14 ~~~c~~~~-c~-~~~~~~~C~c~~g~~~~~c~   43 (145)
                      ...|.||. |. .....+.|.|+.+|+|.+|+
T Consensus        12 ~~yClnGgcc~~~~~~~~~C~C~~gy~G~RCe   43 (49)
T d1moxc_          12 TQFCFHGTCRFLVQEDKPACVCHSGYVGARCE   43 (49)
T ss_dssp             SCSSTTEEEEEETTTTEEEEEECTTEESTTSC
T ss_pred             CCEeeCCeEEecCCCCCcEeECCCCCEecCCc
Confidence            35677754 43 33456789999999999986

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.05  E-value=0.022  Score=26.36  Aligned_cols=30  Identities=30%  Similarity=0.649  Sum_probs=21.2

Q ss_pred             CCCCCCC-Eee-eCCCceeeecCCCcccCCCC
Q psy6349          14 EALCHNG-TCE-DFGNSHRCHCMEGYTGSYCS   43 (145)
Q Consensus        14 ~~~c~~~-~c~-~~~~~~~C~c~~g~~~~~c~   43 (145)
                      ...|.|| .|. .....+.|.|..+|+|.+|+
T Consensus        13 ~~yC~nGgcc~~~~~~~~~C~C~~gy~G~rCe   44 (50)
T d1ioxa_          13 KHYCIKGRCRFVVAEQTPSCVCDEGYIGARCE   44 (50)
T ss_dssp             TTSCTTCCEEEETTTTEEEECCCTTEETTTTC
T ss_pred             CCCccCCeEEEeCCCCCcEeECCCCCeeCCCc
Confidence            3457765 453 33456789999999999886

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.016  Score=27.63  Aligned_cols=13  Identities=23%  Similarity=0.299  Sum_probs=6.0

Q ss_pred             ceeEecCCCCCcC
Q psy6349         130 SHRCHCICWDDLR  142 (145)
Q Consensus       130 ~~~c~c~~~~~~~  142 (145)
                      +|+|.|++||+|.
T Consensus        21 ~~~C~C~~Gy~L~   33 (57)
T d1rfnb_          21 KVVCSCTEGYRLA   33 (57)
T ss_dssp             CEEEECCTTEEEC
T ss_pred             CeEeECCCCCEEC
Confidence            3444444444443

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.074  Score=22.52  Aligned_cols=29  Identities=41%  Similarity=0.979  Sum_probs=19.3

Q ss_pred             CCC-CEeeeC---CCceeeecCCCcccCCCCcc
Q psy6349          17 CHN-GTCEDF---GNSHRCHCMEGYTGSYCSIE   45 (145)
Q Consensus        17 c~~-~~c~~~---~~~~~C~c~~g~~~~~c~~~   45 (145)
                      |.| |.|+.-   +.-.+|.|+.+|.|..|+++
T Consensus         4 ClNGG~Cvsyk~FS~I~rC~CPk~f~G~HCEiD   36 (40)
T d2i9aa1           4 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEID   36 (40)
T ss_dssp             CCTTCEEEECSSSTTCEEEECCTTEESTTSCEE
T ss_pred             cccCCEEEEEehhcCCEEecCCcccCceeEEec
Confidence            444 577643   33457888888888888644

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.18  E-value=0.019  Score=26.91  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=11.2

Q ss_pred             eeeeCCC-ceeEecCCCCCcCCC
Q psy6349         123 TCEDFGN-SHRCHCICWDDLRNS  144 (145)
Q Consensus       123 ~c~~~~g-~~~c~c~~~~~~~~~  144 (145)
                      .|.+..+ .|+|.|+.||.|.++
T Consensus        12 ~C~~~~~~~~~C~C~~Gy~L~~D   34 (53)
T d2bz6l1          12 YCSDHTGTKRSCRCHEGYSLLAD   34 (53)
T ss_dssp             EEEEETTTEEEEECCTTEEECTT
T ss_pred             EeeeCCCCCEEeECCCCCEECCC
Confidence            4444443 345666666655443

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.95  E-value=0.014  Score=27.14  Aligned_cols=23  Identities=22%  Similarity=0.527  Sum_probs=18.6

Q ss_pred             CCCEEeeCCCCeEeeCCCCCccC
Q psy6349          94 NGGICHDLINHFSCSCPSGLKRE  116 (145)
Q Consensus        94 ~~~~c~~~~~~~~C~c~~g~~~~  116 (145)
                      ..+.|+++.++|+|.|++||.+.
T Consensus         8 C~h~C~~~~~~~~C~C~~Gy~L~   30 (51)
T d1kigl_           8 CDQFCREERSEVRCSCAHGYVLG   30 (51)
T ss_dssp             SSSCCCEETTEECCCCCTTEEEC
T ss_pred             cccEeEcCCCcEEeEcCCCCEEC
Confidence            34567888889999999999864

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.68  E-value=0.19  Score=21.97  Aligned_cols=21  Identities=38%  Similarity=0.939  Sum_probs=16.6

Q ss_pred             CCEeeeCCCceeeecCCCcccCCCC
Q psy6349          19 NGTCEDFGNSHRCHCMEGYTGSYCS   43 (145)
Q Consensus        19 ~~~c~~~~~~~~C~c~~g~~~~~c~   43 (145)
                      |+.|...    .|.|.++|.|..|+
T Consensus        20 hG~C~~G----~C~C~~Gw~G~~Ce   40 (41)
T d1l3ya_          20 RGLCFCG----KCRCHPGFEGSACQ   40 (41)
T ss_dssp             HEEEETT----EEEECTTCCTTTTC
T ss_pred             CCeEECC----EEEcCCCCcccCcc
Confidence            4778643    69999999999885