Psyllid ID: psy6405

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------55
Protein Sequence
MQREQFGSITSIASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDLNSLGYPRTQDLNALGYPKTRDLNALEYIKTRDLNALEYIKTRDLNALRYPKTQDLNALEYPKTQDLNALGHPKTQDLNALGHPKTQDLNALIQDLNALGYDLNALGHPKTQDLNALGYKILNALEYPKSQDLNALGYPKTQDLNVLEYPKTRDLNALRYPKTQDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNAIGYKILNALGHPESPKTRDLNALLWNTF
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccEEEEEEEEccccccccEEEEcccccccccEEEEEEccccHHccccccccccEEEEEccEEcccccHHHHHHHHHccccEEEEEEcccccccEEEEcccccccccccEEEEEcccccHHHHccccccccEEEEEcccccccccHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccEEEEEcccccccccEEEEEEccccccccccccccccEEEEEcccccccccHHHHHHHHHHccccEEEEEEccccccEEEEcccccccccccEEEEEEccccccccccccccccEEEEEcccccccccHHHHHHHHHHccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccHHHHHHHHHcccccccccccccccccccHHHcccEEccccccHHHcccccccccccccccEcccccccHHHHcccccccHHHHccccccccccccccccccHHHHHHHcccHHHcccccccccccccccccHHHHHHHHcccHHHcccccccccccccccccHHHHHHHHcccHHHcccccccccccccccccHHHHHHHHcccHHHccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
mqreqfgsitsiasstsLISQQELQQLIDEsnqsldeggcpsllipgtseVSVVVLHrdlpgnsvgitlaggsdyeskeiTVHKVisgtpadrdgrlqkgdrilsingksmkglthkeslailkrgppveitlikdgaglgfsleggkdspfgdqpltvkkiftggcaekngqlkagdeiltinnvpvteMSRIEAWSLLKKLNDGTIQDIKALGydlnslgyprtqdlnalgypktrdlnALEYIKTRDLNALEYIKTrdlnalrypktqdlnaleypktqdlnalghpktqdlnalghpktqDLNALIQDLNAlgydlnalghpktqdLNALGYKILNaleypksqdlnalgypktqdlnvleypktrdlnalrypktqdlnalghpktqdlndtrfeypkiqdlnalgydlnalghpktqdlndtrfeypkiqdlnalgydlnalghpktqdlndtrfeypkiqdlnalgydlnalghpktqdlndtrfeypkiqdlnalgydlnalghpktqdLNAIGYKILNalghpespktrDLNALLWNTF
Flexible Loop (DISEMBL)
mqreqfgsitsiasstslISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITlaggsdyeskEITVHKvisgtpadrdgrlqkgdrilsingksmkglthkeslailkrgppVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAekngqlkagdeiltinnvpvtEMSRIEAWSLLKKLNDGTIQDIKALGYDLNSLGYPRTQDLNALGYPKTRDLNALEYIKTRDLNAleyiktrdlnalryPKTQDLNALEYPKTQDLNALGHPKTQDLNALGHPKTQDLNALIQDLNALGYDLNALGHPKTQDLNALGYKILNALEYPKSQDLNALgypktqdlnvlEYPKTRDLNALRypktqdlnalghpktqdlNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNAIGYKILNalghpespktrdlnALLWNTF
Low Complexity Region (SEG)
MQREQFGsitsiasstslisqqelqqlidesNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDLNSLGYPRTQDLNALGYPKTRDLNALEYIKTRDLNALEYIKTRDLNALRYPKTQDLNALEYPKTQDLNALGHPKTQDLNALGHPKTQDLNALIQDLNALGYDLNALGHPKTQDLNALGYKILNALEYPKSQDLNALGYPKTQDLNVLEYPKTRDLNALRYPKTQDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNAIGYKILNALGHPESPKTRDLNALLWNTF
Disordered region (IsUnstruct)
***************************************CPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVI*******************************ESLAILKRGPPVEITLIKDGAGLGFSLEGG****FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDLNSLGYPRTQDLNALGYPKTRDLNALEYIKTRDLNALEYIKTRDLNALRYPKTQDLNALEYP***********************TQDLNALIQDLNALGYDLNALGHPKTQDLNALGYKILNALEYPKSQDLNALGYPKTQDLNVLEYPKTRDLNALRYPKTQDLNAL*******LNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNAIGYKILNALG************LL****
Disordered Region (DISOPRED)
***********************************************TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEIT*I**********************LTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDL************************************************************************************************************************************************************************************************************************************************************************************************************************************LLWN**
Disordered Region (DISEMBL)
**********SIASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDLNSLGYPRTQDLNALGYPKTRDLNALEYIKTRDLNALEYIKTRDLNALRYPKTQDLNALEYPKTQDLNALGHPKTQDLNALGHPKTQDLNALIQDLNALGYDLNALGHPKTQDLNALGYKILNALEYPKSQDLNALGYPKTQDLNVLEYPKTRDLNALRYPKTQDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNAIGYKILNALGHPESPKTRDLNALLWNTF
Disordered Region (DISPRO)
*******************************************LIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGY**********************************************************************LGHPKTQDLNALGHPKTQDLNALIQDLNALGYDLNALGHPKTQDLNALGYKILNALEYPKSQDLNALGYPKTQDLNVLEYPKTRDLNALRYPKTQDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNAIGYKILNALGHPESPKTRDLNALLWNTF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQREQFGSITSIASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDLNSLGYPRTQDLNALGYPKTRDLNALEYIKTRDLNALEYIKTRDLNALRYPKTQDLNALEYPKTQDLNALGHPKTQDLNALGHPKTQDLNALIQDLNALGYDLNALGHPKTQDLNALGYKILNALEYPKSQDLNALGYPKTQDLNVLEYPKTRDLNALRYPKTQDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNAIGYKILNALGHPESPKTRDLNALLWNTF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	548	2.2.26 [Sep-21-2011]
O62676	630	Pro-interleukin-16 OS=Mac	N/A	N/A	0.348	0.303	0.370	2e-32
O62674	631	Pro-interleukin-16 OS=Chl	N/A	N/A	0.343	0.297	0.375	2e-32
O62675	630	Pro-interleukin-16 OS=Mac	yes	N/A	0.343	0.298	0.375	3e-32
O62666	631	Pro-interleukin-16 OS=Pan	yes	N/A	0.354	0.307	0.369	5e-32
Q0V8R5	627	Pro-interleukin-16 OS=Bos	yes	N/A	0.377	0.330	0.370	6e-32
Q14005	1332	Pro-interleukin-16 OS=Hom	no	N/A	0.354	0.145	0.369	1e-31
O62678	632	Pro-interleukin-16 OS=Aot	N/A	N/A	0.343	0.297	0.370	2e-31
O62677	627	Pro-interleukin-16 OS=Sai	N/A	N/A	0.343	0.299	0.370	4e-31
O54824	1322	Pro-interleukin-16 OS=Mus	yes	N/A	0.339	0.140	0.380	1e-30
O15018	2839	PDZ domain-containing pro	no	N/A	0.290	0.056	0.334	1e-25

>sp|O62676|IL16_MACFA Pro-interleukin-16 OS=Macaca fascicularis GN=IL16 PE=3 SV=1

 Score =  141 bits (355), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/243 (37%), Positives = 132/243 (54%), Gaps = 52/243 (21%)

Query: 14  SSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGS 73
           S  SL+S +EL+QLI+E  + LDE     L       + V +LH++  G  +G +LAGG+
Sbjct: 378 SVISLLSSEELKQLIEEV-KVLDEATLKQL-----DSIHVTILHKEE-GAGLGFSLAGGA 430

Query: 74  DYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRG-PPVE-- 130
           D E+K ITVHKV     A ++G +QKG+ +LSINGKS+KG TH ++LAIL++   P +  
Sbjct: 431 DLENKVITVHKVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHNDALAILRQAREPRQAV 490

Query: 131 ------------------------------------------ITLIKDGAGLGFSLEGGK 148
                                                     +TL K  AGLGFSLEGGK
Sbjct: 491 IVTRKLTAESMPDLNSTTDSAASASAASDVSVESSAEATVYTVTLEKMSAGLGFSLEGGK 550

Query: 149 DSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI 208
            S  GD+PLT+ +IF G  +E++  ++ GDEIL +    +  ++R EAW+++K L DG +
Sbjct: 551 GSLHGDKPLTINRIFKGAASEQSETIQPGDEILQLAGTAMQGLTRFEAWNIIKALPDGPV 610

Query: 209 QDI 211
             +
Sbjct: 611 TTV 613

Pro-interleukin-16 is involved in cell cycle progression in T-cells. Appears to be involved in transcriptional regulation of SKP2 and is probably part of a transcriptional repression complex on the core promoter of the SKP2 gene. May act as a scaffold for GABPB1 (the DNA-binding subunit the GABP transcription factor complex) and HDAC3 thus maintaining transcriptional repression and blocking cell cycle progression in resting T-cells.
Macaca fascicularis (taxid: 9541)

>sp|O62674|IL16_CHLAE Pro-interleukin-16 OS=Chlorocebus aethiops GN=IL16 PE=2 SV=1

 Score =  140 bits (354), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/240 (37%), Positives = 131/240 (54%), Gaps = 52/240 (21%)

Query: 14  SSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGS 73
           S  SL+S +EL+QLI+E  + LDE     L       + V +LH++  G  +G +LAGG+
Sbjct: 379 SVISLLSSEELKQLIEEV-KVLDEATLKQL-----DSIHVTILHKEE-GAGLGFSLAGGA 431

Query: 74  DYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRG-PPVE-- 130
           D E+K ITVHKV     A ++G +QKG+ +LSINGKS+KG TH ++LAIL++   P +  
Sbjct: 432 DLENKVITVHKVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHNDALAILRQAREPRQAV 491

Query: 131 ------------------------------------------ITLIKDGAGLGFSLEGGK 148
                                                     +TL K  AGLGFSLEGGK
Sbjct: 492 IVTRKLTAESMPDLNSTTDSAASASAASDVSVESSAEATVYTVTLEKMSAGLGFSLEGGK 551

Query: 149 DSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI 208
            S  GD+PLT+ +IF G  +E++  ++ GDEIL +    +  ++R EAW+++K L DG +
Sbjct: 552 GSLHGDKPLTINRIFKGAASEQSETIQPGDEILQLAGTAMQGLTRFEAWNIIKALPDGPV 611

Pro-interleukin-16 is involved in cell cycle progression in T-cells. Appears to be involved in transcriptional regulation of SKP2 and is probably part of a transcriptional repression complex on the core promoter of the SKP2 gene. May act as a scaffold for GABPB1 (the DNA-binding subunit the GABP transcription factor complex) and HDAC3 thus maintaining transcriptional repression and blocking cell cycle progression in resting T-cells.

Chlorocebus aethiops (taxid: 9534)

>sp|O62675|IL16_MACMU Pro-interleukin-16 OS=Macaca mulatta GN=IL16 PE=2 SV=1

 Score =  140 bits (353), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/240 (37%), Positives = 131/240 (54%), Gaps = 52/240 (21%)

Query: 14  SSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGS 73
           S  SL+S +EL+QLI+E  + LDE     L       + V +LH++  G  +G +LAGG+
Sbjct: 378 SVISLLSSEELKQLIEEV-KVLDEATLKQL-----DSIHVTILHKEE-GAGLGFSLAGGA 430

Query: 74  DYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRG-PPVE-- 130
           D E+K ITVHKV     A ++G +QKG+ +LSINGKS+KG TH ++LAIL++   P +  
Sbjct: 431 DLENKVITVHKVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHNDALAILRQAREPRQAV 490

Query: 131 ------------------------------------------ITLIKDGAGLGFSLEGGK 148
                                                     +TL K  AGLGFSLEGGK
Sbjct: 491 IVTRKLTAESMPDLNSTTDSAASASAASDVSVESSAEATVYTVTLEKMSAGLGFSLEGGK 550

Query: 149 DSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI 208
            S  GD+PLT+ +IF G  +E++  ++ GDEIL +    +  ++R EAW+++K L DG +
Sbjct: 551 GSLHGDKPLTINRIFKGAASEQSETIQPGDEILQLAGTAMQGLTRFEAWNIIKALPDGPV 610

Pro-interleukin-16 is involved in cell cycle progression in T-cells. Appears to be involved in transcriptional regulation of SKP2 and is probably part of a transcriptional repression complex on the core promoter of the SKP2 gene. May act as a scaffold for GABPB1 (the DNA-binding subunit the GABP transcription factor complex) and HDAC3 thus maintaining transcriptional repression and blocking cell cycle progression in resting T-cells.

Macaca mulatta (taxid: 9544)

>sp|O62666|IL16_PANTR Pro-interleukin-16 OS=Pan troglodytes GN=IL16 PE=2 SV=1

 Score =  139 bits (350), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 91/246 (36%), Positives = 133/246 (54%), Gaps = 52/246 (21%)

Query: 8   SITSIASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGI 67
           S+ S  S  SL+S +EL++LI+E  + LDE     L       + V +LH++  G  +G 
Sbjct: 373 SLQSGQSVISLLSSEELKKLIEEV-KVLDEATLKQL-----DSIHVTILHKE-EGAGLGF 425

Query: 68  TLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK--R 125
           +LAGG+D E+K ITVH+V     A ++G +QKG+ +LSINGKS+KG TH ++LAIL+  R
Sbjct: 426 SLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHNDALAILRQAR 485

Query: 126 GPP-------------------------------------------VEITLIKDGAGLGF 142
            P                                              +TL K  AGLGF
Sbjct: 486 EPRQAVIVTRKLTPEAMPDLNSSTDSAASASAASDVSVESTAEATVCTVTLEKMSAGLGF 545

Query: 143 SLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK 202
           SLEGGK S  GD+PLT+ +IF G  +E++  ++ GDEIL +    +  ++R EAW+++K 
Sbjct: 546 SLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLAGTAMQGLTRFEAWNIIKA 605

Query: 203 LNDGTI 208
           L DG +
Sbjct: 606 LPDGPV 611

Pro-interleukin-16 is involved in cell cycle progression in T-cells. Appears to be involved in transcriptional regulation of SKP2 and is probably part of a transcriptional repression complex on the core promoter of the SKP2 gene. May act as a scaffold for GABPB1 (the DNA-binding subunit the GABP transcription factor complex) and HDAC3 thus maintaining transcriptional repression and blocking cell cycle progression in resting T-cells.

Pan troglodytes (taxid: 9598)

>sp|Q0V8R5|IL16_BOVIN Pro-interleukin-16 OS=Bos taurus GN=IL16 PE=2 SV=1

 Score =  139 bits (350), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 96/259 (37%), Positives = 138/259 (53%), Gaps = 52/259 (20%)

Query: 14  SSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGS 73
           S  SL+S +EL++LI+E  + LDE     L       + V +LH++  G  +G +LAGG+
Sbjct: 376 SVISLLSTEELKKLIEEV-KVLDEATLKQL-----DSIHVTILHKEE-GAGLGFSLAGGA 428

Query: 74  DYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK--------- 124
           D E+K ITVH+V     A ++G +QKG+ +LSINGKS+KG TH ++LAIL+         
Sbjct: 429 DLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGATHNDALAILRQAREPRQAV 488

Query: 125 ---RGPPVE--------------------------------ITLIKDGAGLGFSLEGGKD 149
              R P +E                                +TL K  AGLGFSLEGGK 
Sbjct: 489 IVTRRPTLEATTDLNSSTDSSGSASVTSDVSIESAEATVCTVTLEKTSAGLGFSLEGGKG 548

Query: 150 SPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQ 209
           S  GD+PLTV +IF G  +E++  ++ GDEI+ +    +  ++R EAW+++K L DG + 
Sbjct: 549 SLHGDKPLTVNRIFKGLASEQSDTVQPGDEIVHLAGTAMQGLTRFEAWNIIKALPDGPV- 607

Query: 210 DIKALGYDLNSLGYPRTQD 228
            I      L S G P   D
Sbjct: 608 TIVLRRKSLQSKGTPAAGD 626

Pro-interleukin-16 is involved in cell cycle progression in T-cells. Appears to be involved in transcriptional regulation of SKP2 and is probably part of a transcriptional repression complex on the core promoter of the SKP2 gene. May act as a scaffold for GABPB1 (the DNA-binding subunit the GABP transcription factor complex) and HDAC3 thus maintaining transcriptional repression and blocking cell cycle progression in resting T-cells.

Bos taurus (taxid: 9913)

>sp|Q14005|IL16_HUMAN Pro-interleukin-16 OS=Homo sapiens GN=IL16 PE=1 SV=4

 Score =  138 bits (347), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/246 (36%), Positives = 133/246 (54%), Gaps = 52/246 (21%)

Query: 8    SITSIASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGI 67
            S+ S  S  SL+S +EL++LI+E  + LDE     L       + V +LH++  G  +G 
Sbjct: 1074 SLQSGQSVISLLSSEELKKLIEEV-KVLDEATLKQL-----DGIHVTILHKEE-GAGLGF 1126

Query: 68   TLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK--R 125
            +LAGG+D E+K ITVH+V     A ++G +QKG+ +LSINGKS+KG TH ++LAIL+  R
Sbjct: 1127 SLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAR 1186

Query: 126  GPP-------------------------------------------VEITLIKDGAGLGF 142
             P                                              +TL K  AGLGF
Sbjct: 1187 EPRQAVIVTRKLTPEAMPDLNSSTDSAASASAASDVSVESTAEATVCTVTLEKMSAGLGF 1246

Query: 143  SLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK 202
            SLEGGK S  GD+PLT+ +IF G  +E++  ++ GDEIL +    +  ++R EAW+++K 
Sbjct: 1247 SLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKA 1306

Query: 203  LNDGTI 208
            L DG +
Sbjct: 1307 LPDGPV 1312

Isoform 3 is involved in cell cycle progression in T-cells. Appears to be involved in transcriptional regulation of SKP2 and is probably part of a transcriptional repression complex on the core promoter of the SKP2 gene. May act as a scaffold for GABPB1 (the DNA-binding subunit the GABP transcription factor complex) and HDAC3 thus maintaining transcriptional repression and blocking cell cycle progression in resting T-cells.

Homo sapiens (taxid: 9606)

>sp|O62678|IL16_AOTTR Pro-interleukin-16 OS=Aotus trivirgatus GN=IL16 PE=2 SV=1

 Score =  137 bits (345), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/240 (37%), Positives = 130/240 (54%), Gaps = 52/240 (21%)

Query: 14  SSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGS 73
           S  SL+S +EL++LI+E  + LDE     L       + V +LH++  G  +G +LAGG+
Sbjct: 380 SVISLLSSEELKKLIEEV-KDLDEATLKQL-----DSIHVTILHKEE-GAGLGFSLAGGA 432

Query: 74  DYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK--------- 124
           D E+K ITVH+V     A ++G +QKG+ +LSINGKS+KG TH ++LAIL+         
Sbjct: 433 DLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHNDALAILRQAREPRQAV 492

Query: 125 ---RGPPVE---------------------------------ITLIKDGAGLGFSLEGGK 148
              R P  E                                 +TL K   GLGFSLEGGK
Sbjct: 493 IVTRKPTPETAPDLNSSTDSAASVSAASDVSVDSTAEATVCTVTLEKMSGGLGFSLEGGK 552

Query: 149 DSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI 208
            S  GD+PLT+ +IF G  +E++  ++ GDEIL +    +  ++R EAW+++K L DG +
Sbjct: 553 GSLHGDKPLTINRIFKGAASEQSETVQPGDEILHLAGTAMQGLTRFEAWNIIKALPDGPV 612

Pro-interleukin-16 is involved in cell cycle progression in T-cells. Appears to be involved in transcriptional regulation of SKP2 and is probably part of a transcriptional repression complex on the core promoter of the SKP2 gene. May act as a scaffold for GABPB1 (the DNA-binding subunit the GABP transcription factor complex) and HDAC3 thus maintaining transcriptional repression and blocking cell cycle progression in resting T-cells.

Aotus trivirgatus (taxid: 9505)

>sp|O62677|IL16_SAISC Pro-interleukin-16 OS=Saimiri sciureus GN=IL16 PE=2 SV=1

 Score =  136 bits (343), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/240 (37%), Positives = 129/240 (53%), Gaps = 52/240 (21%)

Query: 14  SSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGS 73
           S  SL+S +EL+QLI+E  + LDE     L       + V +LH++  G  +G +LAGG+
Sbjct: 375 SVISLLSSEELKQLIEEV-KDLDEATLKQL-----DSIHVTILHKEE-GAGLGFSLAGGA 427

Query: 74  DYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK--RGPP--- 128
           D E+K ITVH+V     A ++G +QKG+ +LSINGKS+KG TH ++LAIL+  R P    
Sbjct: 428 DLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHNDALAILRQAREPRQAV 487

Query: 129 ----------------------------------------VEITLIKDGAGLGFSLEGGK 148
                                                     +TL K   GLGFSLEGGK
Sbjct: 488 IVTRKLTPETVPDLNSSTDSAASASAASDVSVDSTAEATVCTVTLEKMSGGLGFSLEGGK 547

Query: 149 DSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI 208
            S  GD+PLT+ +IF G  +E++  ++ GDEIL +    +  ++R EAW+++K L DG +
Sbjct: 548 GSLQGDKPLTINRIFKGAASEQSETVQPGDEILHLAGTAMQGLTRFEAWNIIKALPDGPV 607

Pro-interleukin-16 is involved in cell cycle progression in T-cells. Appears to be involved in transcriptional regulation of SKP2 and is probably part of a transcriptional repression complex on the core promoter of the SKP2 gene. May act as a scaffold for GABPB1 (the DNA-binding subunit the GABP transcription factor complex) and HDAC3 thus maintaining transcriptional repression and blocking cell cycle progression in resting T-cells.

Saimiri sciureus (taxid: 9521)

>sp|O54824|IL16_MOUSE Pro-interleukin-16 OS=Mus musculus GN=Il16 PE=1 SV=3

 Score =  135 bits (339), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 129/239 (53%), Gaps = 53/239 (22%)

Query: 14   SSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGS 73
            S  SL+S +EL++LI+E  + LDE     L       + V +LH++  G  +G +LAGG+
Sbjct: 1073 SVISLLSAEELEKLIEEV-RVLDEATLKQL-----DSIHVTILHKEE-GAGLGFSLAGGA 1125

Query: 74   DYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK--------- 124
            D E+K ITVH+V     A ++G +QKG+ +LSINGKS+KG TH ++LAIL+         
Sbjct: 1126 DLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGATHNDALAILRQARDPRQAV 1185

Query: 125  ---RGPPVE--------------------------------ITLIKDGAGLGFSLEGGKD 149
               R   VE                                +TL K  AGLGFSLEGGK 
Sbjct: 1186 IVTRRTTVEATHDLNSSTDSAASASAASDISVESKEATVCTVTLEKTSAGLGFSLEGGKG 1245

Query: 150  SPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI 208
            S  GD+PLT+ +IF G   E+   ++ GDEIL +    V  ++R EAW+++K L DG +
Sbjct: 1246 SLHGDKPLTINRIFKG--TEQGEMVQPGDEILQLAGTAVQGLTRFEAWNVIKALPDGPV 1302

Isoform 2 is involved in cell cycle progression in T-cells. Appears to be involved in transcriptional regulation of SKP2 and is probably part of a transcriptional repression complex on the core promoter of the SKP2 gene. May act as a scaffold for GABPB1 (the DNA-binding subunit the GABP transcription factor complex) and HDAC3 thus maintaining transcriptional repression and blocking cell cycle progression in resting T-cells.

Mus musculus (taxid: 10090)

>sp|O15018|PDZD2_HUMAN PDZ domain-containing protein 2 OS=Homo sapiens GN=PDZD2 PE=1 SV=4

 Score =  118 bits (296), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/212 (33%), Positives = 112/212 (52%), Gaps = 53/212 (25%)

Query: 50   EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
            +V  +VL+R   G+ +G ++AGG+D E K ITVH+V S   A ++G + +GD +LS+NG 
Sbjct: 2619 DVCFIVLNRK-EGSGLGFSVAGGTDVEPKSITVHRVFSQGAASQEGTMNRGDFLLSVNGA 2677

Query: 110  SMKGLTH-------------KESLAILKRG-----------PPVE--------------- 130
            S+ GL H             K++L ++K+G           PP                 
Sbjct: 2678 SLAGLAHGNVLKVLHQAQLHKDALVVIKKGMDQPRPSARQEPPTANGKGLLSRKTIPLEP 2737

Query: 131  -------------ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAG 177
                         + ++K  AGLG SL+GGK S  GD PL +K+++ GG AE+ G ++AG
Sbjct: 2738 GIGRSVAVHDALCVEVLKTSAGLGLSLDGGKSSVTGDGPLVIKRVYKGGAAEQAGIIEAG 2797

Query: 178  DEILTINNVPVTEMSRIEAWSLLKKLNDGTIQ 209
            DEIL IN  P+  +   +AW+++K + +G +Q
Sbjct: 2798 DEILAINGKPLVGLMHFDAWNIMKSVPEGPVQ 2829

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	548
242004702	918	conserved hypothetical protein [Pediculu	0.375	0.224	0.544	6e-66
328722578	1187	PREDICTED: hypothetical protein LOC10016	0.374	0.172	0.568	7e-65
307197719	1380	Interleukin-16 [Harpegnathos saltator]	0.357	0.142	0.524	2e-56
241156201	957	PDZ-containing protein, putative [Ixodes	0.364	0.208	0.475	2e-56
307172398	1555	Interleukin-16 [Camponotus floridanus]	0.357	0.126	0.528	2e-56
383852080	1396	PREDICTED: uncharacterized protein LOC10	0.357	0.140	0.524	3e-55
350415387	1455	PREDICTED: hypothetical protein LOC10074	0.357	0.134	0.516	9e-55
340710900	1454	PREDICTED: hypothetical protein LOC10064	0.357	0.134	0.516	1e-54
345487742	1409	PREDICTED: hypothetical protein LOC10012	0.357	0.139	0.509	1e-54
328789728	1381	PREDICTED: hypothetical protein LOC72589	0.357	0.141	0.513	5e-54

>gi|242004702|ref|XP_002423218.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212506189|gb|EEB10480.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  258 bits (659), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 141/259 (54%), Positives = 169/259 (65%), Gaps = 53/259 (20%)

Query: 3   REQFGSITSIASSTSLISQQELQQLIDESNQSLDEGG-CPSLLIPGTSEVSVVVLHRDLP 61
           REQFGSITS+ASSTSLIS QELQ L++E+NQ+L+E G     L     +V V++LHRD  
Sbjct: 648 REQFGSITSLASSTSLISPQELQLLLEEANQTLEESGNVGGGLNTNNHDVLVIILHRDTV 707

Query: 62  GNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
           G S+GITLAGG+DYESKEITVHKV++G+PADRDGR+QKGDRILSINGKSMKG    E + 
Sbjct: 708 GGSIGITLAGGADYESKEITVHKVLAGSPADRDGRIQKGDRILSINGKSMKGSPRLEVVL 767

Query: 122 ILK----------------------------------------------------RGPPV 129
           ++                                                     RGPPV
Sbjct: 768 VVSRLKSDILTDCINSDDSNGINNSIRQHSMVRAGRMLKKSTLLESDESSFCQTARGPPV 827

Query: 130 EITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVT 189
            +TL+KDGAGLGFSLEGGKD   GD+PL +KKIFTGG AEK GQLKAGDE+L IN + V+
Sbjct: 828 SLTLVKDGAGLGFSLEGGKDCSTGDKPLVIKKIFTGGAAEKCGQLKAGDELLNINGMDVS 887

Query: 190 EMSRIEAWSLLKKLNDGTI 208
            MSRIEAW L+K+L DG +
Sbjct: 888 IMSRIEAWKLMKQLPDGNV 906

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328722578|ref|XP_001951758.2| PREDICTED: hypothetical protein LOC100166850 [Acyrthosiphon pisum]

 Score =  254 bits (650), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 145/255 (56%), Positives = 184/255 (72%), Gaps = 50/255 (19%)

Query: 4    EQFGSITSIASSTSLISQQELQQLIDESNQSLDE--GGC-----PSLLIPGTSEVSVVVL 56
            E FGSI+S+ASSTSLISQQELQQLIDE+NQ+L+E   GC      + + P + EV+VV+L
Sbjct: 925  EPFGSISSLASSTSLISQQELQQLIDEANQTLEENNSGCYGTSTAATIPPHSVEVTVVIL 984

Query: 57   HRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH 116
            HRD+  +SVGITLAGG+DYE+KEITV+KV++G+PAD+DGR++KGDRILSINGKSMKG+TH
Sbjct: 985  HRDMATSSVGITLAGGADYETKEITVYKVLTGSPADKDGRIRKGDRILSINGKSMKGITH 1044

Query: 117  KESLAILKR-------------------------------------------GPPVEITL 133
            +ESLAILK                                            GP  +I L
Sbjct: 1045 RESLAILKAPRSEVVLVISRCKSDMINESVGLHQSADLLTSTKNEVIANRVFGPLTKIVL 1104

Query: 134  IKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSR 193
             KDG+GLGFSLEGGK+SP GDQPLTVKKIFTGGCAE+ GQ+ AGDE++++N++ VT MSR
Sbjct: 1105 SKDGSGLGFSLEGGKNSPTGDQPLTVKKIFTGGCAEQCGQILAGDELVSVNDIDVTGMSR 1164

Query: 194  IEAWSLLKKLNDGTI 208
             EAW+L+K+L +GT+
Sbjct: 1165 TEAWNLMKRLVNGTV 1179

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197719|gb|EFN78868.1| Interleukin-16 [Harpegnathos saltator]

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 131/250 (52%), Positives = 167/250 (66%), Gaps = 54/250 (21%)

Query: 4    EQFGSITSIASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGN 63
            EQFGSI+S+ASSTSLISQQEL QL++E+  SL+E         G  +V VV+LH++ P  
Sbjct: 1128 EQFGSISSLASSTSLISQQELAQLVEEA--SLEEAR-------GAHDVVVVLLHKENPTG 1178

Query: 64   SVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL 123
            SVGITLAGG+D E KEITVH+V++ + AD+DGR+Q+GDRILSING+S +GLTH+ES+A+L
Sbjct: 1179 SVGITLAGGADCEVKEITVHRVLTHSIADKDGRVQRGDRILSINGRSTRGLTHRESMAVL 1238

Query: 124  KR---------------------------------------------GPPVEITLIKDGA 138
            K+                                             GPP  + + KDGA
Sbjct: 1239 KQPRSEVVLVVSRARMEEGCKLRSRTASVETIVEGLETNGVVENIAWGPPSTVAVYKDGA 1298

Query: 139  GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWS 198
            GLGFSLEGG+DSP GD+PL +KKIFTGG AEK G L+AGD++L +N   VT MSRIEAWS
Sbjct: 1299 GLGFSLEGGRDSPLGDRPLIIKKIFTGGAAEKTGALRAGDQLLEVNGNDVTRMSRIEAWS 1358

Query: 199  LLKKLNDGTI 208
            L+KKL+DG +
Sbjct: 1359 LMKKLHDGEV 1368

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241156201|ref|XP_002407719.1| PDZ-containing protein, putative [Ixodes scapularis] gi|215494210|gb|EEC03851.1| PDZ-containing protein, putative [Ixodes scapularis]

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 124/261 (47%), Positives = 164/261 (62%), Gaps = 61/261 (23%)

Query: 3   REQFGSITSIASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPG 62
           REQ+ S+TS+AS++SLIS QELQQLIDE+NQSLDE G          ++ VV+LH+D P 
Sbjct: 694 REQYSSMTSLASTSSLISPQELQQLIDEANQSLDEAGA------SGHDIHVVILHKDSPT 747

Query: 63  NSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLT------- 115
           + +G+TLAGGSDYE+KEITVHKVI+G  ADRDGR++K DRILSINGK+MK +T       
Sbjct: 748 SGLGVTLAGGSDYETKEITVHKVIAGGLADRDGRIRKSDRILSINGKTMKNVTHKDAIDI 807

Query: 116 ----HKESLAILKRG--------------------------PPV---------------- 129
                +E + +L R                           P V                
Sbjct: 808 LKSPRQEVVLVLSREGRQSVRTTPNISRASSLSSVLDVVDEPEVAPTTAAEAQQAPAPTK 867

Query: 130 --EITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
             +I L+KDG GLGF+LEGGKDSP GD+PL +K+IF GG AE++G+L+ G E+++IN+  
Sbjct: 868 QEKIVLVKDGLGLGFTLEGGKDSPLGDKPLVIKRIFRGGAAERDGRLQVGSELISINSQV 927

Query: 188 VTEMSRIEAWSLLKKLNDGTI 208
           V+ M+R EAW+ LKKL DG +
Sbjct: 928 VSSMTRTEAWNFLKKLPDGPL 948

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307172398|gb|EFN63864.1| Interleukin-16 [Camponotus floridanus]

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 132/250 (52%), Positives = 167/250 (66%), Gaps = 54/250 (21%)

Query: 4    EQFGSITSIASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGN 63
            EQFGSI+S+ASSTSLISQQEL QL++E+  SL+E         G  +V VV+LH++ P  
Sbjct: 1303 EQFGSISSLASSTSLISQQELAQLVEEA--SLEE-------TRGAHDVVVVLLHKENPTG 1353

Query: 64   SVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL 123
            SVGITLAGG+D E KEITVH+V++ + AD+DGR+Q+GDRILSING+S +GLTH+ES+A+L
Sbjct: 1354 SVGITLAGGADCEVKEITVHRVLTHSIADKDGRVQRGDRILSINGRSTRGLTHRESMAVL 1413

Query: 124  KR---------------------------------------------GPPVEITLIKDGA 138
            K+                                             GPP  + + KDGA
Sbjct: 1414 KQPRSEVVLVVSRARIEESCKLRSRTASVETIVEGLETNGNVENTAWGPPSTVAVYKDGA 1473

Query: 139  GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWS 198
            GLGFSLEGG+DSP GD+PL +KKIFTGG AEK G LKAGD++L +N   VT MSRIEAWS
Sbjct: 1474 GLGFSLEGGRDSPLGDRPLIIKKIFTGGAAEKTGALKAGDQLLEVNGNDVTRMSRIEAWS 1533

Query: 199  LLKKLNDGTI 208
            L+KKL+DG +
Sbjct: 1534 LMKKLHDGEV 1543

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852080|ref|XP_003701557.1| PREDICTED: uncharacterized protein LOC100882911 [Megachile rotundata]

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 131/250 (52%), Positives = 167/250 (66%), Gaps = 54/250 (21%)

Query: 4    EQFGSITSIASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGN 63
            EQFGSI+S+ASSTSLISQQEL QL++E+  SL+E       + G  +V VV+LH++    
Sbjct: 1144 EQFGSISSLASSTSLISQQELAQLVEEA--SLEE-------VRGAHDVIVVLLHKENHAG 1194

Query: 64   SVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL 123
            SVGITLAGGSD E KEITVH+V++ + AD+DGR+Q+GDRILSING+S +GLTH+ES+A+L
Sbjct: 1195 SVGITLAGGSDCEIKEITVHRVLAHSIADKDGRVQRGDRILSINGRSTQGLTHRESIAVL 1254

Query: 124  KR---------------------------------------------GPPVEITLIKDGA 138
            K+                                             GPP  + + KDGA
Sbjct: 1255 KQPRSEVVLVVSRARTEEGCKLRSRAASVETIIEGFETNDVTEDTAWGPPSVVAVYKDGA 1314

Query: 139  GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWS 198
            GLGFSLEGG+DSP G++PL +KKIFTGG AEK G LKAGD++L +N   VT MSRIEAWS
Sbjct: 1315 GLGFSLEGGRDSPLGNRPLLIKKIFTGGAAEKTGALKAGDQLLEVNGYDVTRMSRIEAWS 1374

Query: 199  LLKKLNDGTI 208
            L+KKL+DG +
Sbjct: 1375 LMKKLHDGEV 1384

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350415387|ref|XP_003490623.1| PREDICTED: hypothetical protein LOC100747974 [Bombus impatiens]

 Score =  221 bits (562), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 129/250 (51%), Positives = 166/250 (66%), Gaps = 54/250 (21%)

Query: 4    EQFGSITSIASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGN 63
            EQFGSI+S+ASSTSLISQQEL QL++E+  SL+E       + G  +V VV+LH++ P  
Sbjct: 1203 EQFGSISSLASSTSLISQQELAQLVEEA--SLEE-------VRGAHDVIVVLLHKENPTG 1253

Query: 64   SVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL 123
            SVGITLAGG+D E KEIT+H+V++ + AD+DGR+Q+GDRILSING+  +GLTH+ES+A+L
Sbjct: 1254 SVGITLAGGADCEIKEITIHRVLAHSIADKDGRVQRGDRILSINGRGTQGLTHRESIAVL 1313

Query: 124  KR---------------------------------------------GPPVEITLIKDGA 138
            K+                                             GPP  + + KDG 
Sbjct: 1314 KQPRSEVVLVVSRARSEEGCKLKSRTASVETIIEGFETNDTSEDTAWGPPSVVAVYKDGT 1373

Query: 139  GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWS 198
            GLGFSLEGG+DSP GD+PL +KKIFTGG AEK G LKAGD++L +N   VT MSRIEAWS
Sbjct: 1374 GLGFSLEGGRDSPLGDRPLLIKKIFTGGAAEKTGALKAGDQLLEVNGYDVTRMSRIEAWS 1433

Query: 199  LLKKLNDGTI 208
            L+KKL+DG +
Sbjct: 1434 LMKKLHDGEV 1443

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710900|ref|XP_003394021.1| PREDICTED: hypothetical protein LOC100649322 [Bombus terrestris]

 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 129/250 (51%), Positives = 166/250 (66%), Gaps = 54/250 (21%)

Query: 4    EQFGSITSIASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGN 63
            EQFGSI+S+ASSTSLISQQEL QL++E+  SL+E       + G  +V VV+LH++ P  
Sbjct: 1202 EQFGSISSLASSTSLISQQELAQLVEEA--SLEE-------VRGAHDVIVVLLHKENPTG 1252

Query: 64   SVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL 123
            SVGITLAGG+D E KEIT+H+V++ + AD+DGR+Q+GDRILSING+  +GLTH+ES+A+L
Sbjct: 1253 SVGITLAGGADCEIKEITIHRVLAHSIADKDGRVQRGDRILSINGRGTQGLTHRESIAVL 1312

Query: 124  KR---------------------------------------------GPPVEITLIKDGA 138
            K+                                             GPP  + + KDG 
Sbjct: 1313 KQPRSEVVLVVSRARSEEGCKLKSRTASVETIIEGFETNDTSEDTAWGPPSVVAVYKDGT 1372

Query: 139  GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWS 198
            GLGFSLEGG+DSP GD+PL +KKIFTGG AEK G LKAGD++L +N   VT MSRIEAWS
Sbjct: 1373 GLGFSLEGGRDSPLGDRPLLIKKIFTGGAAEKTGALKAGDQLLEVNGYDVTRMSRIEAWS 1432

Query: 199  LLKKLNDGTI 208
            L+KKL+DG +
Sbjct: 1433 LMKKLHDGEV 1442

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487742|ref|XP_001606112.2| PREDICTED: hypothetical protein LOC100122506 [Nasonia vitripennis]

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 129/253 (50%), Positives = 165/253 (65%), Gaps = 57/253 (22%)

Query: 4    EQFGSITSIASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGN 63
            EQFGSI+S+ASSTSLISQQEL QL++E+N     GG          +V VV+LH++ P  
Sbjct: 1154 EQFGSISSLASSTSLISQQELAQLVEEANLEEPRGG---------HDVVVVLLHKENPSG 1204

Query: 64   SVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL 123
            SVGITLAGG D E+KEIT+H+V++ + ADRDG +Q+GDRILSING+SM+GLTH+ESLA+L
Sbjct: 1205 SVGITLAGGLDCETKEITIHRVLAHSIADRDGSVQRGDRILSINGRSMRGLTHRESLAVL 1264

Query: 124  KR------------------------------------------------GPPVEITLIK 135
            K+                                                GP + +++ K
Sbjct: 1265 KQPRSEVVLVVSRVKLDDAAAGNRLRNRTESVETIVEGYETNGVTENTAWGPALMVSMYK 1324

Query: 136  DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIE 195
            DGAGLGFSLEGG+DSP GD+PL +KKIFTGG AEK G L+AGD++L +N   V+ MSRIE
Sbjct: 1325 DGAGLGFSLEGGRDSPLGDRPLLIKKIFTGGAAEKTGALRAGDQLLEVNKRDVSRMSRIE 1384

Query: 196  AWSLLKKLNDGTI 208
            AWSL+KKL DG +
Sbjct: 1385 AWSLMKKLPDGEV 1397

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789728|ref|XP_001121687.2| PREDICTED: hypothetical protein LOC725893 [Apis mellifera]

 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 129/251 (51%), Positives = 166/251 (66%), Gaps = 55/251 (21%)

Query: 4    EQFGSITSIASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGN 63
            EQFGSI+S+ASSTSLISQQEL QL++E+  SL+E         G  +V VV+LH++ P  
Sbjct: 1128 EQFGSISSLASSTSLISQQELAQLVEEA--SLEE-------TRGVHDVIVVLLHKENPTG 1178

Query: 64   SVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL 123
            SVGITLAGG+D E KEIT+H+V++ + AD+DGR+Q+GDRILSING+S +GLTH+ES+A+L
Sbjct: 1179 SVGITLAGGADCEIKEITIHRVLAHSIADKDGRVQRGDRILSINGRSTQGLTHRESIAVL 1238

Query: 124  KR----------------------------------------------GPPVEITLIKDG 137
            K+                                              GPP  + + KDG
Sbjct: 1239 KQPRSEVVLVVSRSRTEEGSCKLKSRTASVETIIEGFETNDTAEDTAWGPPSVVAVYKDG 1298

Query: 138  AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAW 197
             GLGFSLEGG+DSP G++PL +KKIFTGG AEK G LKAGD++L +N   VT MSRIEAW
Sbjct: 1299 TGLGFSLEGGRDSPLGNRPLLIKKIFTGGAAEKTGALKAGDQLLQVNGYDVTRMSRIEAW 1358

Query: 198  SLLKKLNDGTI 208
            SL+KKL+DG +
Sbjct: 1359 SLMKKLHDGEV 1369

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	548
FB|FBgn0087007	2637	bbg "big bang" [Drosophila mel	0.178	0.037	0.558	2.4e-40
UNIPROTKB|Q76EI9	635	IL-16 "Interleukin 16" [Sus sc	0.142	0.122	0.512	4.1e-29
UNIPROTKB|K7GNX8	636	IL16 "Uncharacterized protein"	0.142	0.122	0.512	4.1e-29
UNIPROTKB|K7GQ54	1338	IL16 "Uncharacterized protein"	0.142	0.058	0.512	3.5e-28
UNIPROTKB|Q0V8R5	627	IL16 "Pro-interleukin-16" [Bos	0.135	0.118	0.493	5.1e-28
UNIPROTKB|F1PNI8	1329	IL16 "Uncharacterized protein"	0.142	0.058	0.487	2.1e-27
UNIPROTKB|F1NZM4	607	IL16 "Uncharacterized protein"	0.180	0.163	0.4	4.3e-27
UNIPROTKB|F1N1J2	1327	IL16 "Interleukin-16" [Bos tau	0.135	0.055	0.493	4.3e-27
UNIPROTKB|Q14005	1332	IL16 "Pro-interleukin-16" [Hom	0.142	0.058	0.474	4.4e-27
UNIPROTKB|F1NZM0	690	IL16 "Uncharacterized protein"	0.180	0.143	0.4	6.6e-27

FB|FBgn0087007 bbg "big bang" [Drosophila melanogaster (taxid:7227)]

 Score = 292 (107.8 bits), Expect = 2.4e-40, Sum P(2) = 2.4e-40
 Identities = 57/102 (55%), Positives = 78/102 (76%)

Query:    33 QSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPAD 92
             Q + E   P L  P   E  ++VL R+ P +S+GITLAGGSDYE+KEIT+HK++S TPA 
Sbjct:  2315 QQIVEEADPPLKTP---EAFIIVLQRENPESSIGITLAGGSDYEAKEITIHKILSNTPAA 2371

Query:    93 RDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLI 134
             +DGRL+KGDRIL++NG SM+GLTH+ES+++LK   P E+ L+
Sbjct:  2372 KDGRLKKGDRILAVNGMSMRGLTHRESISVLKTPRP-EVVLV 2412

GO:0007444 "imaginal disc development" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|Q76EI9 IL-16 "Interleukin 16" [Sus scrofa (taxid:9823)]

 Score = 206 (77.6 bits), Expect = 4.1e-29, Sum P(2) = 4.1e-29
 Identities = 40/78 (51%), Positives = 54/78 (69%)

Query:   131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
             +TL K  AGLGFSLEGGK S  GD+PLTV +IF G  +E+N  ++ GDEIL +    V  
Sbjct:   538 VTLEKTSAGLGFSLEGGKGSLHGDKPLTVNRIFRGAASEQNETIQPGDEILHLAGTAVQG 597

Query:   191 MSRIEAWSLLKKLNDGTI 208
             ++R EAW+++K L DG +
Sbjct:   598 LTRFEAWNIIKALPDGPV 615

GO:0050930 "induction of positive chemotaxis" evidence=IEA

GO:0030595 "leukocyte chemotaxis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005125 "cytokine activity" evidence=IEA

UNIPROTKB|K7GNX8 IL16 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 206 (77.6 bits), Expect = 4.1e-29, Sum P(2) = 4.1e-29
 Identities = 40/78 (51%), Positives = 54/78 (69%)

Query:   131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
             +TL K  AGLGFSLEGGK S  GD+PLTV +IF G  +E+N  ++ GDEIL +    V  
Sbjct:   539 VTLEKTSAGLGFSLEGGKGSLHGDKPLTVNRIFRGAASEQNETIQPGDEILHLAGTAVQG 598

Query:   191 MSRIEAWSLLKKLNDGTI 208
             ++R EAW+++K L DG +
Sbjct:   599 LTRFEAWNIIKALPDGPV 616

GO:0005125 "cytokine activity" evidence=IEA

UNIPROTKB|K7GQ54 IL16 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 206 (77.6 bits), Expect = 3.5e-28, Sum P(2) = 3.5e-28
 Identities = 40/78 (51%), Positives = 54/78 (69%)

Query:   131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
             +TL K  AGLGFSLEGGK S  GD+PLTV +IF G  +E+N  ++ GDEIL +    V  
Sbjct:  1241 VTLEKTSAGLGFSLEGGKGSLHGDKPLTVNRIFRGAASEQNETIQPGDEILHLAGTAVQG 1300

Query:   191 MSRIEAWSLLKKLNDGTI 208
             ++R EAW+++K L DG +
Sbjct:  1301 LTRFEAWNIIKALPDGPV 1318

GO:0005125 "cytokine activity" evidence=IEA

UNIPROTKB|Q0V8R5 IL16 "Pro-interleukin-16" [Bos taurus (taxid:9913)]

 Score = 197 (74.4 bits), Expect = 5.1e-28, Sum P(2) = 5.1e-28
 Identities = 37/75 (49%), Positives = 56/75 (74%)

Query:    51 VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKS 110
             + V +LH++  G  +G +LAGG+D E+K ITVH+V     A ++G +QKG+ +LSINGKS
Sbjct:   407 IHVTILHKE-EGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKS 465

Query:   111 MKGLTHKESLAILKR 125
             +KG TH ++LAIL++
Sbjct:   466 LKGATHNDALAILRQ 480

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0050930 "induction of positive chemotaxis" evidence=IEA

GO:0030595 "leukocyte chemotaxis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005125 "cytokine activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

UNIPROTKB|F1PNI8 IL16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 199 (75.1 bits), Expect = 2.1e-27, Sum P(2) = 2.1e-27
 Identities = 38/78 (48%), Positives = 54/78 (69%)

Query:   131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
             +TL K  AGLGFSLEGGK S  GD+PLT+ +IF G  +E++  ++ GDEIL +    +  
Sbjct:  1232 VTLEKTSAGLGFSLEGGKGSLLGDKPLTINRIFKGAASEQSETIQPGDEILHLAGTAMQG 1291

Query:   191 MSRIEAWSLLKKLNDGTI 208
             ++R EAW+++K L DG I
Sbjct:  1292 LTRFEAWNIIKTLPDGPI 1309

GO:0050930 "induction of positive chemotaxis" evidence=IEA

GO:0030595 "leukocyte chemotaxis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005125 "cytokine activity" evidence=IEA

UNIPROTKB|F1NZM4 IL16 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 193 (73.0 bits), Expect = 4.3e-27, Sum P(2) = 4.3e-27
 Identities = 44/110 (40%), Positives = 66/110 (60%)

Query:    33 QSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPAD 92
             +SLDE     L      ++ V +LH++     +G +LAGG+D E+K ITVHKV     A 
Sbjct:   375 KSLDEATLKEL-----DDIHVTILHKE-ENTGLGFSLAGGADLENKVITVHKVFPNGLAS 428

Query:    93 RDGRLQKGDRILSINGKSMKGLTHKESLAILKRG-PPVEITLI----KDG 137
             ++G +QKGD +LSINGKS KG TH ++  I+++   P +  ++    KDG
Sbjct:   429 QEGTIQKGDEVLSINGKSFKGATHNDASVIMRQARQPRQAVVVTRKAKDG 478

GO:0005125 "cytokine activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030595 "leukocyte chemotaxis" evidence=IEA

GO:0050930 "induction of positive chemotaxis" evidence=IEA

UNIPROTKB|F1N1J2 IL16 "Interleukin-16" [Bos taurus (taxid:9913)]

 Score = 197 (74.4 bits), Expect = 4.3e-27, Sum P(2) = 4.3e-27
 Identities = 37/75 (49%), Positives = 56/75 (74%)

Query:    51 VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKS 110
             + V +LH++  G  +G +LAGG+D E+K ITVH+V     A ++G +QKG+ +LSINGKS
Sbjct:  1107 IHVTILHKE-EGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKS 1165

Query:   111 MKGLTHKESLAILKR 125
             +KG TH ++LAIL++
Sbjct:  1166 LKGATHNDALAILRQ 1180

GO:0050930 "induction of positive chemotaxis" evidence=IEA

GO:0030595 "leukocyte chemotaxis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005125 "cytokine activity" evidence=IEA

UNIPROTKB|Q14005 IL16 "Pro-interleukin-16" [Homo sapiens (taxid:9606)]

 Score = 197 (74.4 bits), Expect = 4.4e-27, Sum P(2) = 4.4e-27
 Identities = 37/78 (47%), Positives = 54/78 (69%)

Query:   131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
             +TL K  AGLGFSLEGGK S  GD+PLT+ +IF G  +E++  ++ GDEIL +    +  
Sbjct:  1235 VTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQG 1294

Query:   191 MSRIEAWSLLKKLNDGTI 208
             ++R EAW+++K L DG +
Sbjct:  1295 LTRFEAWNIIKALPDGPV 1312

GO:0005615 "extracellular space" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005125 "cytokine activity" evidence=IEA

GO:0030595 "leukocyte chemotaxis" evidence=IEA

GO:0050930 "induction of positive chemotaxis" evidence=IEA

GO:0006955 "immune response" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1NZM0 IL16 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 193 (73.0 bits), Expect = 6.6e-27, Sum P(2) = 6.6e-27
 Identities = 44/110 (40%), Positives = 66/110 (60%)

Query:    33 QSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPAD 92
             +SLDE     L      ++ V +LH++     +G +LAGG+D E+K ITVHKV     A 
Sbjct:   458 KSLDEATLKEL-----DDIHVTILHKE-ENTGLGFSLAGGADLENKVITVHKVFPNGLAS 511

Query:    93 RDGRLQKGDRILSINGKSMKGLTHKESLAILKRG-PPVEITLI----KDG 137
             ++G +QKGD +LSINGKS KG TH ++  I+++   P +  ++    KDG
Sbjct:   512 QEGTIQKGDEVLSINGKSFKGATHNDASVIMRQARQPRQAVVVTRKAKDG 561

GO:0005125 "cytokine activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030595 "leukocyte chemotaxis" evidence=IEA

GO:0050930 "induction of positive chemotaxis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	548
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	8e-20
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	2e-17
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	1e-15
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	2e-14
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	1e-12
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	2e-11
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	5e-09
cd00988	85	cd00988, PDZ_CTP_protease, PDZ domain of C-termina	6e-09
TIGR02037	428	TIGR02037, degP_htrA_DO, periplasmic serine protea	4e-07
pfam13180	81	pfam13180, PDZ_2, PDZ domain	6e-07
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	3e-06
cd00987	90	cd00987, PDZ_serine_protease, PDZ domain of tryspi	2e-05
cd00988	85	cd00988, PDZ_CTP_protease, PDZ domain of C-termina	3e-05
TIGR03900	973	TIGR03900, prc_long_Delta, putative carboxyl-termi	4e-05
COG0793	406	COG0793, Prc, Periplasmic protease [Cell envelope	4e-05
cd00989	79	cd00989, PDZ_metalloprotease, PDZ domain of bacter	4e-05
TIGR00225	334	TIGR00225, prc, C-terminal peptidase (prc)	2e-04
cd00991	79	cd00991, PDZ_archaeal_metalloprotease, PDZ domain	2e-04
TIGR00054	419	TIGR00054, TIGR00054, RIP metalloprotease RseP	0.001
PLN00049	389	PLN00049, PLN00049, carboxyl-terminal processing p	0.003
cd00989	79	cd00989, PDZ_metalloprotease, PDZ domain of bacter	0.004

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 83.4 bits (207), Expect = 8e-20
 Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
            V L +D PG  +G +L GG D     I V +V  G PA+R G L+ GDRIL +NG S++
Sbjct: 3   TVTLRKD-PGGGLGFSLRGGKDSGGG-IFVSRVEPGGPAER-GGLRVGDRILEVNGVSVE 59

Query: 113 GLTHKESLAILKR-GPPVEITLI 134
           GLTH+E++ +LK  G  V +T+ 
Sbjct: 60  GLTHEEAVELLKNSGDEVTLTVR 82

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 76.6 bits (189), Expect = 2e-17
 Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 5/89 (5%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
           E  +V L +   G  +G +L GG D E   + V  V+ G+PA + G L+ GD IL +NG 
Sbjct: 1   EPRLVELEKG--GGGLGFSLVGGKD-EGGGVVVSSVVPGSPAAKAG-LRVGDVILEVNGT 56

Query: 110 SMKGLTHKESLAILKR-GPPVEITLIKDG 137
           S++GLTH E++ +LK+ G  V +T+++ G
Sbjct: 57  SVEGLTHLEAVDLLKKAGGKVTLTVLRGG 85

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 71.4 bits (176), Expect = 1e-15
 Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 5/76 (6%)

Query: 128 PVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
              +TL KD G GLGFSL GGKDS      + V ++  GG AE+ G L+ GD IL +N V
Sbjct: 1   VRTVTLRKDPGGGLGFSLRGGKDS---GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGV 56

Query: 187 PVTEMSRIEAWSLLKK 202
            V  ++  EA  LLK 
Sbjct: 57  SVEGLTHEEAVELLKN 72

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 32/78 (41%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           P  + L K G GLGFSL GGKD       + V  +  G  A K G L+ GD IL +N   
Sbjct: 2   PRLVELEKGGGGLGFSLVGGKDE---GGGVVVSSVVPGSPAAKAG-LRVGDVILEVNGTS 57

Query: 188 VTEMSRIEAWSLLKKLND 205
           V  ++ +EA  LLKK   
Sbjct: 58  VEGLTHLEAVDLLKKAGG 75

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 4/80 (5%)

Query: 54  VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
           V L +   G  +G +L GGSD +   I V +V+ G  A+  G LQ+GDRILSING+ ++ 
Sbjct: 2   VTLEKSGRG-GLGFSLVGGSDGD-PGIFVSEVLPGGAAEAGG-LQEGDRILSINGQDLEN 58

Query: 114 LTHKESLAILKRGPPVEITL 133
           L+H +   +  +G   E+TL
Sbjct: 59  LSH-DEAVLALKGSGGEVTL 77

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 63  NSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAI 122
             +G ++ GG       + V  V  G+PA+R G LQ GD IL++NG  +K LT ++   +
Sbjct: 1   GGLGFSIRGG---TEGGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAEL 56

Query: 123 LKRGPPVEITLI 134
           LK+    ++TL 
Sbjct: 57  LKKEVGEKVTLT 68

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 53.0 bits (128), Expect = 5e-09
 Identities = 34/77 (44%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 130 EITLIKDG-AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
           E+TL K G  GLGFSL GG D   GD  + V ++  GG AE  G L+ GD IL+IN   +
Sbjct: 1   EVTLEKSGRGGLGFSLVGGSD---GDPGIFVSEVLPGGAAEAGG-LQEGDRILSINGQDL 56

Query: 189 TEMSRIEAWSLLKKLND 205
             +S  EA   LK    
Sbjct: 57  ENLSHDEAVLALKGSGG 73

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

 Score = 52.6 bits (127), Expect = 6e-09
 Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 9/78 (11%)

Query: 65  VGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
           +G+ L     Y+   + +  V+ G+PA + G ++ GD I++I+G+ + GL+ ++ + +L 
Sbjct: 4   IGLEL----KYDDGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLL- 57

Query: 125 RGPP---VEITLIKDGAG 139
           RG     V +TL +    
Sbjct: 58  RGKAGTKVRLTLKRGDGE 75

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 85

>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ family

 Score = 52.2 bits (126), Expect = 4e-07
 Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 41/167 (24%)

Query: 82  VHKVISGTPADRDGRLQKGDRILSINGK---SMKGLTH---------KESLAILKRGPPV 129
           V +V+ G+PA++ G L+ GD I S+NGK   S   L           K +L IL++G   
Sbjct: 261 VAQVLPGSPAEKAG-LKAGDVITSVNGKPISSFADLRRAIGTLKPGKKVTLGILRKGKEK 319

Query: 130 EITLI----KDGAG------LGFSLE-------GGKDSPFGDQPLTVKKIFTGGCAEKNG 172
            IT+      +         LG ++                 + + V K+ +G  A + G
Sbjct: 320 TITVTLGASPEEQASSSNPFLGLTVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAG 379

Query: 173 QLKAGDEILTINNVPVT---EMSRI-------EAWSLLKKLNDGTIQ 209
            L+ GD IL++N  PV+   E+ ++          +LL      TI 
Sbjct: 380 -LQPGDVILSVNQQPVSSVAELRKVLARAKKGGRVALLILRGGATIF 425

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 428

>gnl|CDD|221961 pfam13180, PDZ_2, PDZ domain

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 5/73 (6%)

Query: 66  GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH-KESLAILK 124
           G+ +      E   +TV  V  G+PA + G L+ GD ILSI+GK +  LT   E +   K
Sbjct: 4   GVRV---VQNEGTGVTVVSVKEGSPAAKAG-LKPGDIILSIDGKKVNSLTELIEVILNGK 59

Query: 125 RGPPVEITLIKDG 137
            G  V++T+ +DG
Sbjct: 60  PGDTVKLTVYRDG 72

Length = 81

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 139 GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWS 198
           GLGFS+ GG      +  + V  +  G  AE+ G L+AGD IL +N   V  ++  +   
Sbjct: 2   GLGFSIRGG-----TEGGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAE 55

Query: 199 LLKKLNDGTIQ 209
           LLKK     + 
Sbjct: 56  LLKKEVGEKVT 66

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|238487 cd00987, PDZ_serine_protease, PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 82  VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH-KESLAILKRGPPVEITLIKDG 137
           V  V  G+PA + G L+ GD IL++NGK +K +   + +LA LK G  V +T+++ G
Sbjct: 28  VASVDPGSPAAKAG-LKPGDVILAVNGKPVKSVADLRRALAELKPGDKVTLTVLRGG 83

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 90

>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 137 GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEA 196
           G GL    + G         L +  +  G  A K G +KAGD I+ I+  PV  +S  + 
Sbjct: 3   GIGLELKYDDGG--------LVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDV 53

Query: 197 WSLLK 201
             LL+
Sbjct: 54  VKLLR 58

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 85

>gnl|CDD|234386 TIGR03900, prc_long_Delta, putative carboxyl-terminal-processing protease, deltaproteobacterial

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 5/62 (8%)

Query: 79  EITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPP---VEITLIK 135
            +TV +VI GTPA R G LQ+ D I+ I+ +S   +T  +++  L RGPP   V I + +
Sbjct: 152 NLTVVRVIPGTPAARAG-LQRNDVIVKIDDESTVNMTLNDAVGRL-RGPPDTKVTIWVRR 209

Query: 136 DG 137
           +G
Sbjct: 210 EG 211

This model describes a multidomain protein of about 1070 residues, restricted to the order Myxococcales in the Deltaproteobacteria. Members contain a PDZ domain (pfam00595), an S41 family peptidase domain (pfam03572), and an SH3 domain (pfam06347). A core region of this family, including PDZ and S41 regions, is described by TIGR00225, C-terminal processing peptidase, which recognizes the Prc protease. The species distribution of this family approximates that of largely Deltaproteobacterial C-terminal putative protein-sorting domain, TIGR03901, analogous to LPXTG and PEP-CTERM, but the co-occurrence may reflect shared restriction to the Myxococcales rather than a substrate/target relationship. Length = 973

>gnl|CDD|223864 COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 6/77 (7%)

Query: 65  VGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
           +GI L      +   + V   I G+PA + G ++ GD I+ I+GKS+ G++  E++ +++
Sbjct: 102 IGIELQ---MEDIGGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIR 157

Query: 125 R--GPPVEITLIKDGAG 139
              G  V +T+++ G G
Sbjct: 158 GKPGTKVTLTILRAGGG 174

Length = 406

>gnl|CDD|238489 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 5/61 (8%)

Query: 79  EITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGP--PVEITLIKD 136
           E  + +V+ G+PA + G L+ GDRIL+ING+ +K     + +  ++  P  P+ +T+ ++
Sbjct: 13  EPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKSWE--DLVDAVQENPGKPLTLTVERN 69

Query: 137 G 137
           G
Sbjct: 70  G 70

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 79

>gnl|CDD|232883 TIGR00225, prc, C-terminal peptidase (prc)

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 22/83 (26%), Positives = 47/83 (56%), Gaps = 7/83 (8%)

Query: 65  VGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL- 123
           +GI +      +  EI +     G+PA++ G ++ GD+I+ INGKS+ G++  +++A++ 
Sbjct: 53  IGIQV----GMDDGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIR 107

Query: 124 -KRGPPVEITLIKDGAGLGFSLE 145
            K+G  V + +++ G     +  
Sbjct: 108 GKKGTKVSLEILRAGKSKPLTFT 130

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database [Protein fate, Degradation of proteins, peptides, and glycopeptides, Protein fate, Protein modification and repair]. Length = 334

>gnl|CDD|238491 cd00991, PDZ_archaeal_metalloprotease, PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 85  VISGTPADRDGRLQKGDRILSINGKSMKGLTH-KESLAILKRGPPVEITLIKDG 137
           VI G+PA+ +  L  GD I SING  +  L    E+L   K G  + +T++   
Sbjct: 17  VIVGSPAE-NAVLHTGDVIYSINGTPITTLEDFMEALKPTKPGEVITVTVLPST 69

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 79

>gnl|CDD|232801 TIGR00054, TIGR00054, RIP metalloprotease RseP

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 40/191 (20%), Positives = 59/191 (30%), Gaps = 20/191 (10%)

Query: 73  SDYESKEITVHKVI---SGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPP- 128
           S        V  VI          +  ++ GD ILS+NG  + G            G P 
Sbjct: 118 SLIGVPGYEVGPVIELLDKNSIALEAGIEPGDEILSVNGNKIPGFKDVRQQIADIAGEPM 177

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
           VEI   ++        E     P  +    +  +     AEK G LK GD I +IN   +
Sbjct: 178 VEILAERENWTFEVMKELIPRGPKIE--PVLSDVTPNSPAEKAG-LKEGDYIQSINGEKL 234

Query: 189 TEMSRIEAWSLLKKLN----------DGTIQDIKALGYDLNSLGYPRTQDLNALGYPKTR 238
              +     S +K+            +G    I         +G   +  L  L      
Sbjct: 235 RSWTDFV--SAVKENPGKSMDIKVERNGETLSISLTPEAKGKIGIGISPSLAPLEVSYGI 292

Query: 239 DLNALEYIKTR 249
            LNA     + 
Sbjct: 293 -LNAFAKGASA 302

Members of this nearly universal bacterial protein family are regulated intramembrane proteolysis (RIP) proteases. Older and synonymous gene symbols include yaeL in E. coli, mmpA in Caulobacter crescentus, etc. This family includes a region that hits the PDZ domain, found in a number of proteins targeted to the membrane by binding to a peptide ligand. The N-terminal region of this family contains a perfectly conserved motif HEXGH as found in a number of metalloproteinases, where the Glu is the active site and the His residues coordinate the metal cation [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 419

>gnl|CDD|177681 PLN00049, PLN00049, carboxyl-terminal processing protease; Provisional

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)

Query: 59  DLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE 118
            + G  + +    GSD     + V     G PA R G ++ GD IL+I+G S +GL+  E
Sbjct: 83  AVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYE 141

Query: 119 SLAILKRGP---PVEITLIKDG 137
           + A   +GP    VE+TL +  
Sbjct: 142 A-ADRLQGPEGSSVELTLRRGP 162

Length = 389

>gnl|CDD|238489 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%)

Query: 138 AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRI 194
           A LGF   G    P       + ++  G  A K G LKAGD IL IN   +     +
Sbjct: 1   AILGFVPGGPPIEP------VIGEVVPGSPAAKAG-LKAGDRILAINGQKIKSWEDL 50

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	548
KOG3209|consensus	984		99.78
KOG3209|consensus	984		99.7
PRK10779	449	zinc metallopeptidase RseP; Provisional	99.5
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	99.49
PRK10139	455	serine endoprotease; Provisional	99.48
KOG3580|consensus	1027		99.47
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	99.47
PRK10942	473	serine endoprotease; Provisional	99.45
KOG3605|consensus	829		99.31
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	99.18
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.16
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	99.04
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.04
KOG3580|consensus	1027		98.98
PLN00049	389	carboxyl-terminal processing protease; Provisional	98.91
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	98.85
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	98.74
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	98.74
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.74
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.66
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	98.64
KOG3550|consensus	207		98.63
KOG3550|consensus	207		98.62
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	98.61
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.58
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.52
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	98.46
KOG3571|consensus	626		98.42
PRK11186	667	carboxy-terminal protease; Provisional	98.42
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.38
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	98.37
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	98.35
KOG3549|consensus	505		98.3
KOG3551|consensus	506		98.29
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	98.27
KOG3549|consensus	505		98.25
KOG3553|consensus	124		98.24
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	98.23
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	98.14
KOG3551|consensus	506		98.12
KOG1892|consensus	1629		98.1
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	98.01
KOG3553|consensus	124		98.0
KOG3651|consensus	429		97.98
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	97.97
KOG3571|consensus	626		97.95
PRK10779	449	zinc metallopeptidase RseP; Provisional	97.92
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	97.9
PRK10898	353	serine endoprotease; Provisional	97.9
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	97.89
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	97.89
PLN00049	389	carboxyl-terminal processing protease; Provisional	97.87
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	97.83
COG3975	558	Predicted protease with the C-terminal PDZ domain	97.8
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	97.75
KOG1892|consensus	1629		97.72
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	97.7
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	97.65
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	97.65
PRK10139	455	serine endoprotease; Provisional	97.61
KOG1421|consensus	955		97.61
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	97.59
KOG3552|consensus	1298		97.55
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	97.53
PRK10942	473	serine endoprotease; Provisional	97.51
KOG3651|consensus	429		97.49
PRK11186	667	carboxy-terminal protease; Provisional	97.37
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	97.34
KOG3129|consensus	231		97.34
KOG3606|consensus	358		97.29
KOG3542|consensus	1283		97.24
KOG0609|consensus	542		97.05
PRK09681	276	putative type II secretion protein GspC; Provision	97.02
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	97.0
KOG4371|consensus	1332		96.98
KOG1421|consensus	955		96.96
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	96.96
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	96.95
KOG3938|consensus	334		96.85
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	96.79
PRK10898	353	serine endoprotease; Provisional	96.73
KOG3606|consensus	358		96.66
KOG3552|consensus	1298		96.66
KOG3542|consensus	1283		96.58
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	96.52
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	96.48
KOG3834|consensus	462		96.46
KOG0609|consensus	542		96.44
KOG3605|consensus	829		96.31
KOG3938|consensus	334		96.19
KOG4407|consensus	1973		96.12
KOG1320|consensus	473		95.68
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	95.18
KOG3129|consensus	231		95.1
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	94.68
KOG0606|consensus	1205		94.49
COG3031	275	PulC Type II secretory pathway, component PulC [In	94.47
KOG0606|consensus	1205		94.08
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	93.92
KOG1738|consensus	638		93.57
KOG1320|consensus	473		93.54
PRK09681	276	putative type II secretion protein GspC; Provision	93.17
KOG3532|consensus	1051		93.11
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	92.38
KOG1738|consensus	638		91.74
KOG3532|consensus	1051		91.38
COG3975	558	Predicted protease with the C-terminal PDZ domain	89.89
PF12812	78	PDZ_1: PDZ-like domain	89.73
COG0750	375	Predicted membrane-associated Zn-dependent proteas	89.27
COG3031	275	PulC Type II secretory pathway, component PulC [In	87.52
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	85.49
PF11874	183	DUF3394: Domain of unknown function (DUF3394); Int	80.57

>KOG3209|consensus

Probab=99.78  E-value=2.3e-18  Score=188.64  Aligned_cols=160  Identities=31%  Similarity=0.542  Sum_probs=135.1

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh----
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK----  124 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk----  124 (548)
                      ..++.|+|+|. +++||||.|......+..+  |..|.+||||+++|+|++||+|++|||.+|.+++|.+.+..++    
T Consensus       752 ~~~yDV~lhR~-ENeGFGFVi~sS~~kp~sg--iGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGl  828 (984)
T KOG3209|consen  752 SGPYDVVLHRK-ENEGFGFVIMSSQNKPESG--IGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGL  828 (984)
T ss_pred             CCCeeeEEecc-cCCceeEEEEecccCCCCC--ccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCc
Confidence            44789999998 5999999998766544333  9999999999999999999999999999999999999762211    


Q ss_pred             -------------------------------------------------------------------CCCCeEEEEEecC
Q psy6405         125 -------------------------------------------------------------------RGPPVEITLIKDG  137 (548)
Q Consensus       125 -------------------------------------------------------------------~g~~VtVtV~RdG  137 (548)
                                                                                         .+.-++|++.|..
T Consensus       829 sVtLtIip~ee~~~~~~~~sa~~~s~~t~~~~~~q~~glp~~~~s~~~~~pqpdt~~~~~~~~r~~qn~~~~~VelErG~  908 (984)
T KOG3209|consen  829 SVTLTIIPPEEAGPPTSMTSAEKQSPFTQNGPYEQQYGLPGPRPSVYEEHPQPDTFQGLSINDRMSQNGDLYTVELERGA  908 (984)
T ss_pred             eEEEEEcChhccCCCCCCcchhhcCcccccCCHhHccCCCCCCccccccCCCCccccceeccccccccCCeeEEEeeccc
Confidence                                                                               1223788889999


Q ss_pred             cceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEec
Q psy6405         138 AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALG  215 (548)
Q Consensus       138 kgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ri  215 (548)
                      +++||+|.++++.   .++++|-.+.+.+||.+.||+++||+|++|||.++.+++|..+.++|++- +..+.++..|+
T Consensus       909 kGFGFSiRGGrey---nM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~g-g~~vll~Lr~g  982 (984)
T KOG3209|consen  909 KGFGFSIRGGREY---NMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQG-GRRVLLLLRRG  982 (984)
T ss_pred             cccceEeeccccc---ccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhC-CeEEEEEeccC
Confidence            9999999999654   35799999999999999999999999999999999999999999999985 55555555443

>KOG3209|consensus

Probab=99.70  E-value=1.6e-16  Score=174.29  Aligned_cols=160  Identities=26%  Similarity=0.495  Sum_probs=130.6

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh---CC
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK---RG  126 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk---~g  126 (548)
                      +...|.|.|.  -.||||.|.||.+ ...+++|..|++.++|++.|||+.||+|+.|+|.+|.+.+|.+++..+.   ..
T Consensus       649 k~ldV~L~rk--esGFGFRiLGG~e-p~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArn  725 (984)
T KOG3209|consen  649 KELDVFLRRK--ESGFGFRILGGDE-PGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARN  725 (984)
T ss_pred             cceeEEEEee--ccccceEEecCCC-CCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhc
Confidence            5567888887  5899999999975 3578999999999999999999999999999999999999999874432   23


Q ss_pred             CCeEEEEEe----------------------------cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCC
Q psy6405         127 PPVEITLIK----------------------------DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGD  178 (548)
Q Consensus       127 ~~VtVtV~R----------------------------dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GD  178 (548)
                      .-|.++|+|                            +.+++||.|..+...+    +.-|..|.++|||+++|+|++||
T Consensus       726 ghV~LtVRRkv~~~~~~rsp~~s~~~~~~yDV~lhR~ENeGFGFVi~sS~~kp----~sgiGrIieGSPAdRCgkLkVGD  801 (984)
T KOG3209|consen  726 GHVNLTVRRKVRTGPARRSPRNSAAPSGPYDVVLHRKENEGFGFVIMSSQNKP----ESGIGRIIEGSPADRCGKLKVGD  801 (984)
T ss_pred             CceEEEEeeeeeeccccCCcccccCCCCCeeeEEecccCCceeEEEEecccCC----CCCccccccCChhHhhccccccc
Confidence            334444443                            2356788876655443    23388999999999999999999


Q ss_pred             EEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccc
Q psy6405         179 EILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYD  217 (548)
Q Consensus       179 rILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilD  217 (548)
                      +|++|||++|.+++|.+.+.+|+.+ +-.|++++.-.-.
T Consensus       802 rilAVNG~sI~~lsHadiv~LIKda-GlsVtLtIip~ee  839 (984)
T KOG3209|consen  802 RILAVNGQSILNLSHADIVSLIKDA-GLSVTLTIIPPEE  839 (984)
T ss_pred             eEEEecCeeeeccCchhHHHHHHhc-CceEEEEEcChhc
Confidence            9999999999999999999999998 7778877755433

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=99.50  E-value=2.3e-13  Score=147.15  Aligned_cols=136  Identities=15%  Similarity=0.152  Sum_probs=109.4

Q ss_pred             CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeEEEecCCCC-------
Q psy6405          79 EITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGFSLEGGKDS-------  150 (548)
Q Consensus        79 gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGfSItgg~~s-------  150 (548)
                      ...|..|.++|||++|| |++||+|++|||+++.++++.. .+.....++.+.+++.|+++....+++.....       
T Consensus       127 ~~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l~~~~~~~~~~~  205 (449)
T PRK10779        127 RPVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKTLDLRHWAFEPDK  205 (449)
T ss_pred             CccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEEecccccccCccc
Confidence            45789999999999999 9999999999999999998776 34455567789999999988766555432110       


Q ss_pred             -----CCCC------CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEecccc
Q psy6405         151 -----PFGD------QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDL  218 (548)
Q Consensus       151 -----~lG~------~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDL  218 (548)
                           .+|.      .++.|..|.++|||+++| |++||+|++|||+++.++.  ++.+.++...+..+.+.+.|....
T Consensus       206 ~~~~~~lGl~~~~~~~~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~s~~--dl~~~l~~~~~~~v~l~v~R~g~~  281 (449)
T PRK10779        206 QDPVSSLGIRPRGPQIEPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLTQWQ--TFVTLVRDNPGKPLALEIERQGSP  281 (449)
T ss_pred             cchhhcccccccCCCcCcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcCCHH--HHHHHHHhCCCCEEEEEEEECCEE
Confidence                 0110      136899999999999999 9999999999999998776  777888876677889999887654

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=99.49  E-value=4.3e-13  Score=143.75  Aligned_cols=136  Identities=28%  Similarity=0.511  Sum_probs=111.0

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeEEEecCCCC------
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGFSLEGGKDS------  150 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGfSItgg~~s------  150 (548)
                      .+++|..|.++|||+++| |++||+|++|||.++.++.+.. .+.....+..+.++|.|+++...++++.....      
T Consensus       257 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~~  335 (428)
T TIGR02037       257 RGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISSFADLRRAIGTLKPGKKVTLGILRKGKEKTITVTLGASPEEQASS  335 (428)
T ss_pred             CceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECcCCCccccc
Confidence            579999999999999999 9999999999999999987665 44455678889999999888777666532100      


Q ss_pred             ---CC---------------C----CCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCc
Q psy6405         151 ---PF---------------G----DQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGT  207 (548)
Q Consensus       151 ---~l---------------G----~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~  207 (548)
                         .+               +    ..+++|..|.++|+|+++| |++||+|++|||+++.++.  ++.++++.. .+..
T Consensus       336 ~~~~lGi~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s~~--d~~~~l~~~~~g~~  412 (428)
T TIGR02037       336 SNPFLGLTVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSSVA--ELRKVLDRAKKGGR  412 (428)
T ss_pred             cccccceEEecCCHHHHHHcCCCcCcCceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCHH--HHHHHHHhcCCCCE
Confidence               00               0    1478999999999999999 9999999999999998765  788888875 4678


Q ss_pred             eeEEEEeccc
Q psy6405         208 IQDIKALGYD  217 (548)
Q Consensus       208 V~LlV~RilD  217 (548)
                      +.+.+.|...
T Consensus       413 v~l~v~R~g~  422 (428)
T TIGR02037       413 VALLILRGGA  422 (428)
T ss_pred             EEEEEEECCE
Confidence            8888888654

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10139 serine endoprotease; Provisional

Probab=99.48  E-value=6.1e-13  Score=144.31  Aligned_cols=135  Identities=22%  Similarity=0.385  Sum_probs=111.0

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHH-HHHhhCCCCeEEEEEecCcceeEEEecCCCCC-----
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES-LAILKRGPPVEITLIKDGAGLGFSLEGGKDSP-----  151 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~a-V~~lk~g~~VtVtV~RdGkgLGfSItgg~~s~-----  151 (548)
                      .+++|..|.++|||+++| |++||+|++|||+++.+|..... +.....+..+.++|.|+++.+.++++......     
T Consensus       290 ~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~~~~~~~~~~~~  368 (455)
T PRK10139        290 RGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASA  368 (455)
T ss_pred             CceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCCCCccccc
Confidence            589999999999999999 99999999999999999987764 44446788899999999988777775432110     


Q ss_pred             -------CC-----------CCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEE
Q psy6405         152 -------FG-----------DQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKA  213 (548)
Q Consensus       152 -------lG-----------~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~  213 (548)
                             .|           ..+++|..|.++|||+++| |++||+|++|||.++.++.  ++.+.+++.+ ..+.+.+.
T Consensus       369 ~~~~~~~~g~~l~~~~~~~~~~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~--~~~~~l~~~~-~~v~l~v~  444 (455)
T PRK10139        369 EMITPALQGATLSDGQLKDGTKGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSIA--EMRKVLAAKP-AIIALQIV  444 (455)
T ss_pred             ccccccccccEecccccccCCCceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCHH--HHHHHHHhCC-CeEEEEEE
Confidence                   01           1368899999999999999 9999999999999999877  7888888754 67888888


Q ss_pred             eccc
Q psy6405         214 LGYD  217 (548)
Q Consensus       214 RilD  217 (548)
                      |...
T Consensus       445 R~g~  448 (455)
T PRK10139        445 RGNE  448 (455)
T ss_pred             ECCE
Confidence            8654

>KOG3580|consensus

Probab=99.47  E-value=2.4e-13  Score=147.55  Aligned_cols=165  Identities=34%  Similarity=0.548  Sum_probs=129.3

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCC-----CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESK-----EITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL  123 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~-----gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l  123 (548)
                      ++.+++.|.|+ +..||||.|+||.+.+..     .++|+.|.|||||+  |+|+.||+|+.|||+++.+..|.-+++.+
T Consensus         7 WEQhTvTL~kd-p~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAvQqL   83 (1027)
T KOG3580|consen    7 WEQHTVTLQKD-PKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAVQQL   83 (1027)
T ss_pred             hhhheeeeecC-CCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHHHHH
Confidence            56789999998 589999999999987643     78999999999995  88999999999999999999999988777


Q ss_pred             h-CCCCeEEEEEecCc--------------------------ceeEEE----------ecCCC-----------------
Q psy6405         124 K-RGPPVEITLIKDGA--------------------------GLGFSL----------EGGKD-----------------  149 (548)
Q Consensus       124 k-~g~~VtVtV~RdGk--------------------------gLGfSI----------tgg~~-----------------  149 (548)
                      + +++...|+|.|..+                          +..+..          .++..                 
T Consensus        84 rksgK~A~ItvkRprkvqvpa~~asPp~s~~~r~~~ded~~d~Rs~rsg~~~r~~~~s~~grsrsw~~~~er~rP~~R~r  163 (1027)
T KOG3580|consen   84 RKSGKVAAITVKRPRKVQVPALQASPPLSQDDRAFEDEDEFDGRSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERAR  163 (1027)
T ss_pred             HhhccceeEEecccceeeccccCCCCCCCCccccccchhccCcccccccccccccccccCCcccccccccccCCcccccc
Confidence            6 45556677765321                          000000          00000                 


Q ss_pred             --------------------------C--C-------------------CCC---CCeEEEEeccCChhhhcCCCCCCCE
Q psy6405         150 --------------------------S--P-------------------FGD---QPLTVKKIFTGGCAEKNGQLKAGDE  179 (548)
Q Consensus       150 --------------------------s--~-------------------lG~---~gI~VssV~pgSpAekaGrLq~GDr  179 (548)
                                                .  +                   .|.   +.|+|+.|...|.|++.|.|+.||.
T Consensus       164 srer~ls~~~~gprs~~r~~~ss~~~~p~p~~~~~p~kv~LvKsR~nEEyGlrLgSqIFvKeit~~gLAardgnlqEGDi  243 (1027)
T KOG3580|consen  164 SRERDLSRDRRGPRSRSREHPSSRSPSPEPRGRPGPIKVLLVKSRANEEYGLRLGSQIFVKEITRTGLAARDGNLQEGDI  243 (1027)
T ss_pred             ccccccccCCCCCcccccccccCCCCCCCccCCCCcceEEEEeeccchhhcccccchhhhhhhcccchhhccCCcccccE
Confidence                                      0  0                   000   2578888999999999999999999


Q ss_pred             EEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccc
Q psy6405         180 ILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYD  217 (548)
Q Consensus       180 ILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilD  217 (548)
                      |++|||+...+++..++..+|.+. .+++.++|.|...
T Consensus       244 iLkINGtvteNmSLtDar~LIEkS-~GKL~lvVlRD~~  280 (1027)
T KOG3580|consen  244 ILKINGTVTENMSLTDARKLIEKS-RGKLQLVVLRDSQ  280 (1027)
T ss_pred             EEEECcEeeccccchhHHHHHHhc-cCceEEEEEecCC
Confidence            999999999999999999999887 5688999988644

>TIGR00054 RIP metalloprotease RseP

Probab=99.47  E-value=5.8e-13  Score=143.02  Aligned_cols=136  Identities=18%  Similarity=0.165  Sum_probs=109.3

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEEecCCCCCCCCCCe
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPL  157 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI  157 (548)
                      .++.|..|.++|||+++| |++||+|++|||.++.++.+......... .++.+++.|+++...+.++.+........++
T Consensus       128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~~dl~~~ia~~~-~~v~~~I~r~g~~~~l~v~l~~~~~~~~~g~  205 (420)
T TIGR00054       128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGFKDVRQQIADIA-GEPMVEILAERENWTFEVMKELIPRGPKIEP  205 (420)
T ss_pred             CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhc-ccceEEEEEecCceEecccccceecCCCcCc
Confidence            467899999999999999 99999999999999999987775444444 6788999998777655443321111011258


Q ss_pred             EEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEecccc
Q psy6405         158 TVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDL  218 (548)
Q Consensus       158 ~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDL  218 (548)
                      .|..|.++|||+++| |++||+|++|||+++.++.  ++.+.++..++.++.+.+.|....
T Consensus       206 vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s~~--dl~~~l~~~~~~~v~l~v~R~g~~  263 (420)
T TIGR00054       206 VLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRSWT--DFVSAVKENPGKSMDIKVERNGET  263 (420)
T ss_pred             EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCHH--HHHHHHHhCCCCceEEEEEECCEE
Confidence            899999999999999 9999999999999999876  888888887677889999887643

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK10942 serine endoprotease; Provisional

Probab=99.45  E-value=2e-12  Score=140.90  Aligned_cols=135  Identities=24%  Similarity=0.380  Sum_probs=110.8

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeEEEecCCC------C
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGFSLEGGKD------S  150 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGfSItgg~~------s  150 (548)
                      .+++|..|.++|||+++| |++||+|++|||++|.++.... .+.....+..+.++|.|+++...+.++....      .
T Consensus       311 ~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~l~~~~~~~~~~  389 (473)
T PRK10942        311 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKPVNVNVELQQSSQNQVDS  389 (473)
T ss_pred             CceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCeEEEEEEEeCcCccccccc
Confidence            589999999999999999 9999999999999999998765 4445567888999999998877666653221      0


Q ss_pred             ---CCCC-----------CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEecc
Q psy6405         151 ---PFGD-----------QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGY  216 (548)
Q Consensus       151 ---~lG~-----------~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ril  216 (548)
                         .+|.           .++.|.+|.++|+|+++| |++||+|++||++++.++.  ++.++++.. ...+.+++.|..
T Consensus       390 ~~~~lGl~g~~l~~~~~~~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s~~--dl~~~l~~~-~~~v~l~V~R~g  465 (473)
T PRK10942        390 SNIFNGIEGAELSNKGGDKGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKNIA--ELRKILDSK-PSVLALNIQRGD  465 (473)
T ss_pred             ccccccceeeecccccCCCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCHH--HHHHHHHhC-CCeEEEEEEECC
Confidence               0111           368899999999999999 9999999999999999876  888888875 467888888865


Q ss_pred             c
Q psy6405         217 D  217 (548)
Q Consensus       217 D  217 (548)
                      .
T Consensus       466 ~  466 (473)
T PRK10942        466 S  466 (473)
T ss_pred             E
Confidence            4

>KOG3605|consensus

Probab=99.31  E-value=4.2e-12  Score=139.22  Aligned_cols=148  Identities=28%  Similarity=0.531  Sum_probs=116.1

Q ss_pred             CCCCCCCeEEEEEeeCCCCCceEEEEE-eCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHH
Q psy6405          44 LIPGTSEVSVVVLHRDLPGNSVGITLA-GGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAI  122 (548)
Q Consensus        44 ml~~~~d~~tV~L~Kd~~~~GLGfsIa-gG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~  122 (548)
                      ++...+..+.|++.|. .++.||+.|+ .|++..-+.|+|...+.+|||+++|+|..||+|++|||.++.+.....+...
T Consensus       639 ~FakkE~qKEVvv~K~-kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~  717 (829)
T KOG3605|consen  639 HFAKKENQKEVVLEKH-KGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSI  717 (829)
T ss_pred             Hhhhhcccceeeeecc-cCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHH
Confidence            3344455688999988 4899999887 4555555678999999999999999999999999999999999987775433


Q ss_pred             h---hCCCCeEEEEE-----------ecCc--ceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCE
Q psy6405         123 L---KRGPPVEITLI-----------KDGA--GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV  186 (548)
Q Consensus       123 l---k~g~~VtVtV~-----------RdGk--gLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGv  186 (548)
                      +   +....|+++|.           |...  .+||+|..+          +|.++..||.|++.| +++|-||++|||+
T Consensus       718 Ik~~KnQT~VkltiV~cpPV~~V~I~RPd~kyQLGFSVQNG----------iICSLlRGGIAERGG-VRVGHRIIEINgQ  786 (829)
T KOG3605|consen  718 IKGLKNQTAVKLNIVSCPPVTTVLIRRPDLRYQLGFSVQNG----------IICSLLRGGIAERGG-VRVGHRIIEINGQ  786 (829)
T ss_pred             HhcccccceEEEEEecCCCceEEEeecccchhhccceeeCc----------EeehhhcccchhccC-ceeeeeEEEECCc
Confidence            3   33333444444           4322  356666543          467788999999999 9999999999999


Q ss_pred             EcCCCCHHHHHHHHHHc
Q psy6405         187 PVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       187 sV~~~t~~EavelLrs~  203 (548)
                      +|.-..|+.++++|..+
T Consensus       787 SVVA~pHekIV~lLs~a  803 (829)
T KOG3605|consen  787 SVVATPHEKIVQLLSNA  803 (829)
T ss_pred             eEEeccHHHHHHHHHHh
Confidence            99999999999999876

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=99.18  E-value=4.6e-11  Score=128.19  Aligned_cols=188  Identities=19%  Similarity=0.241  Sum_probs=134.5

Q ss_pred             HHHHhhhccHHHHHHhhhccccccccCCCccCCCCCCCCeEEEEEeeCC----------CCCceEEEEEeCCCCCCCCeE
Q psy6405          12 IASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDL----------PGNSVGITLAGGSDYESKEIT   81 (548)
Q Consensus        12 ~as~~Slis~~yv~~~ieev~~~~~~dgai~gml~~~~d~~tV~L~Kd~----------~~~GLGfsIagG~d~~~~gVv   81 (548)
                      +...+..+.++|+    .........++++.+|+.+..++++.++.++.          ++.|+|+.+.....   ..+.
T Consensus        43 ~~~~~~~i~~~y~----~~~~~~~l~~~ai~g~ls~l~Dp~s~y~~~e~~~~~~~~~~~~~~GiG~~i~~~~~---~~~~  115 (406)
T COG0793          43 LDDKYEGIREEYV----TRVDSDKLFEGAIEGMLSSLGDPHSTYLDPEDAAEFRTDTSGEFGGIGIELQMEDI---GGVK  115 (406)
T ss_pred             HHHHHHhhHHHHc----cCccHHHHHHHHHHHHHHhcCCCcccccCHHHHHHhhhhccccccceeEEEEEecC---CCcE
Confidence            3445555666666    44555667888899999999999999887754          67899999985432   6899


Q ss_pred             EEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh--CCCCeEEEEEecCc--ceeEEEecCCCCCCCCCCe
Q psy6405          82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK--RGPPVEITLIKDGA--GLGFSLEGGKDSPFGDQPL  157 (548)
Q Consensus        82 Vs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk--~g~~VtVtV~RdGk--gLGfSItgg~~s~lG~~gI  157 (548)
                      |.++.+++||+++| |++||+|++|||.++.+++..+++..++  .|..+++++.|.+.  .+.+++++..        +
T Consensus       116 V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~~~k~~~v~l~Re~--------i  186 (406)
T COG0793         116 VVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAGGGKPFTVTLTREE--------I  186 (406)
T ss_pred             EEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcCCCceeEEEEEEEE--------E
Confidence            99999999999999 9999999999999999999877776665  67789999999743  4566665543        3


Q ss_pred             EEEEeccCChhhhcCCCCC-CCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccccCCCCC
Q psy6405         158 TVKKIFTGGCAEKNGQLKA-GDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDLNSLGY  223 (548)
Q Consensus       158 ~VssV~pgSpAekaGrLq~-GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDLr~~~~  223 (548)
                      .+..+....-   .  ... +.+|..|.-.++...+..++...++......   +...++|+|...-
T Consensus       187 ~l~~v~~~~~---~--~~~~~~~IGyI~I~~F~~~~~~~~~~al~~L~~~~---~~GlIlDLR~N~G  245 (406)
T COG0793         187 ELEDVAAKEK---V--EEGGKGRIGYIRIPSFGEGTYEDLEKALDELKKQG---AKGLILDLRNNPG  245 (406)
T ss_pred             eccceeeeee---e--ecCCCceEEEEEecccccchHHHHHHHHHHHHhcC---CcEEEEEeCCCCC
Confidence            3333321100   0  111 2357777777777777776677776664433   5677788887643

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.16  E-value=1.5e-10  Score=95.99  Aligned_cols=79  Identities=44%  Similarity=0.810  Sum_probs=66.9

Q ss_pred             EEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCC-CeEE
Q psy6405          53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGP-PVEI  131 (548)
Q Consensus        53 tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~-~VtV  131 (548)
                      +|.+.|+ +..+|||++.++.+....+++|..|.++|||+++| |++||+|++|||+++.+|++.+++..++... ++++
T Consensus         1 ~v~l~k~-~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L   78 (81)
T PF00595_consen    1 QVTLEKS-GNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTL   78 (81)
T ss_dssp             EEEEEES-TTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEE
T ss_pred             CEEEEeC-CCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEE
Confidence            4678887 58999999998766433589999999999999999 9999999999999999999999887766443 5666


Q ss_pred             EE
Q psy6405         132 TL  133 (548)
Q Consensus       132 tV  133 (548)
                      +|
T Consensus        79 ~V   80 (81)
T PF00595_consen   79 TV   80 (81)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=99.04  E-value=9.2e-10  Score=91.93  Aligned_cols=79  Identities=37%  Similarity=0.563  Sum_probs=65.4

Q ss_pred             ceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeE
Q psy6405          64 SVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGF  142 (548)
Q Consensus        64 GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGf  142 (548)
                      +||+.+....+  ..+++|..|.++|||+++| |++||+|++|||.++.++.+.. .+....++..+.|++.|+++...+
T Consensus         2 ~lGv~~~~~~~--~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~   78 (82)
T PF13180_consen    2 GLGVTVQNLSD--TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTLTVLRDGEELTV   78 (82)
T ss_dssp             E-SEEEEECSC--SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEEEEEETTEEEEE
T ss_pred             EECeEEEEccC--CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEE
Confidence            67888885432  3589999999999999999 9999999999999998887766 344667889999999999998888


Q ss_pred             EEe
Q psy6405         143 SLE  145 (548)
Q Consensus       143 SIt  145 (548)
                      +|+
T Consensus        79 ~v~   81 (82)
T PF13180_consen   79 EVT   81 (82)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            775

...

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.04  E-value=1.3e-09  Score=90.44  Aligned_cols=80  Identities=38%  Similarity=0.550  Sum_probs=68.9

Q ss_pred             EEEEEe-cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCce
Q psy6405         130 EITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI  208 (548)
Q Consensus       130 tVtV~R-dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V  208 (548)
                      +|++.| ....+||++..+....  ..+++|..|.++|+|+++| |++||+|++|||+++.++++.+++++++.+.+ .+
T Consensus         1 ~v~l~k~~~~~lG~~l~~~~~~~--~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~-~v   76 (81)
T PF00595_consen    1 QVTLEKSGNGPLGFTLRGGSDND--EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASN-PV   76 (81)
T ss_dssp             EEEEEESTTSBSSEEEEEESTSS--SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTS-EE
T ss_pred             CEEEEeCCCCCcCEEEEecCCCC--cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCC-cE
Confidence            467888 7788999998876542  2369999999999999999 99999999999999999999999999999854 77


Q ss_pred             eEEEE
Q psy6405         209 QDIKA  213 (548)
Q Consensus       209 ~LlV~  213 (548)
                      ++++.
T Consensus        77 ~L~V~   81 (81)
T PF00595_consen   77 TLTVQ   81 (81)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            77663

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>KOG3580|consensus

Probab=98.98  E-value=1.6e-09  Score=118.44  Aligned_cols=151  Identities=28%  Similarity=0.472  Sum_probs=112.2

Q ss_pred             EEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh-hCCCCeE
Q psy6405          52 SVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL-KRGPPVE  130 (548)
Q Consensus        52 ~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l-k~g~~Vt  130 (548)
                      ..+.|.|....+.+|+.+.       ..+||..+...|.|++.|.|+.||.|++|||+...+|+..++...+ ++...+.
T Consensus       200 ~kv~LvKsR~nEEyGlrLg-------SqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~  272 (1027)
T KOG3580|consen  200 IKVLLVKSRANEEYGLRLG-------SQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQ  272 (1027)
T ss_pred             ceEEEEeeccchhhccccc-------chhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCceE
Confidence            3444544444667777776       4689999999999999999999999999999999999988764221 1222233


Q ss_pred             EEEEe---------------------------------------------------------------------------
Q psy6405         131 ITLIK---------------------------------------------------------------------------  135 (548)
Q Consensus       131 VtV~R---------------------------------------------------------------------------  135 (548)
                      +.|.|                                                                           
T Consensus       273 lvVlRD~~qtLiNiP~l~d~dSe~~disEi~tms~rs~spp~rrs~~~s~d~~s~s~h~p~~Ps~r~~~~~R~s~~gat~  352 (1027)
T KOG3580|consen  273 LVVLRDSQQTLINIPSLNDSDSEIEDISEIETMSDRSFSPPERRSQYSSYDYHSSSEHLPERPSSREDTPSRLSRMGATP  352 (1027)
T ss_pred             EEEEecCCceeeecCCCccccccccchhhhhccccccCCCchhhhhccCccccCchhcCCCCCCccccchhhcccCCCCC
Confidence            33333                                                                           


Q ss_pred             --------------------------------------------------------------cCcceeEEEecCCCCCCC
Q psy6405         136 --------------------------------------------------------------DGAGLGFSLEGGKDSPFG  153 (548)
Q Consensus       136 --------------------------------------------------------------dGkgLGfSItgg~~s~lG  153 (548)
                                                                                    .|...|+.+.++.+    
T Consensus       353 tPvks~~d~~~~~V~e~t~e~~~~q~p~lP~pk~~~~~~~~pS~~~m~~ygysP~tk~VrF~KGdSvGLRLAGGND----  428 (1027)
T KOG3580|consen  353 TPVKSTGDIAGTVVPETTKEPRYQQEPPLPQPKAAPRTFLRPSPEDMAIYGYSPNTKMVRFKKGDSVGLRLAGGND----  428 (1027)
T ss_pred             CCccCccccCCccccccccCcccccCCCCCCcccCcceeeecCHHHHHHhcCCCCceeEEeecCCeeeeEeccCCc----
Confidence                                                                          22233333333322    


Q ss_pred             CCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC-CCceeEEEEec
Q psy6405         154 DQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN-DGTIQDIKALG  215 (548)
Q Consensus       154 ~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~-g~~V~LlV~Ri  215 (548)
                       .+|+|..|.+++||++.| |+.||+|+.||.+++.++..++++..|-..+ +.+++++..+.
T Consensus       429 -VGIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ~k  489 (1027)
T KOG3580|consen  429 -VGIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQSK  489 (1027)
T ss_pred             -eeEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhhhh
Confidence             389999999999999999 9999999999999999999999999987775 55777765544

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=98.91  E-value=3.5e-09  Score=112.97  Aligned_cols=175  Identities=21%  Similarity=0.225  Sum_probs=108.7

Q ss_pred             cccCCCccCCCCCCCCeEEEEEeeC----------CCCCceEEEEEeCCCCC--CCCeEEEEEcCCChhhhcCCCCCCCE
Q psy6405          35 LDEGGCPSLLIPGTSEVSVVVLHRD----------LPGNSVGITLAGGSDYE--SKEITVHKVISGTPADRDGRLQKGDR  102 (548)
Q Consensus        35 ~~~dgai~gml~~~~d~~tV~L~Kd----------~~~~GLGfsIagG~d~~--~~gVvVs~V~pGSPAaqAGrLq~GDr  102 (548)
                      .....++.+|+....++++.++..+          ....|+|+.+....+..  ..+++|..|.++|||+++| |++||+
T Consensus        47 ~~~~~~i~~ml~~L~D~hs~y~~~~~~~~~~~~~~~~~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~  125 (389)
T PLN00049         47 EETYAAIRKMLATLDDPFTRFLEPEKFKSLRSGTKGAVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDV  125 (389)
T ss_pred             HHHHHHHHHHHhhCCCCcccCcCHHHHHHHHHhccCCceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCE
Confidence            3445677889988888888665432          24567888876432211  1278999999999999999 999999


Q ss_pred             EEEECCeeccCccHHHHHHHh--hCCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEE
Q psy6405         103 ILSINGKSMKGLTHKESLAIL--KRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEI  180 (548)
Q Consensus       103 ILaINGv~V~~~s~~~aV~~l--k~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrI  180 (548)
                      |++|||++|.+++..++...+  ..+..+.++|.|++....++|+...-.   ..++....+.  ...  ..  ..+..|
T Consensus       126 Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~~~~~~l~r~~v~---~~~v~~~~~~--~~~--~~--~~~~~I  196 (389)
T PLN00049        126 ILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGPETRLVTLTREKVS---LNPVKSRLCE--VPG--PG--AGSPKI  196 (389)
T ss_pred             EEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEeeeEe---ccceeeEEEe--ecc--cc--CCCCCE
Confidence            999999999988665544333  356789999999888777777654311   0112111110  000  00  112345


Q ss_pred             EEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccccCCCC
Q psy6405         181 LTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDLNSLG  222 (548)
Q Consensus       181 LaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDLr~~~  222 (548)
                      ..|.-.++...+..++.+.++......   ....++|+|...
T Consensus       197 gYi~i~~F~~~~~~~~~~~l~~l~~~~---~~glIlDLR~N~  235 (389)
T PLN00049        197 GYIKLTTFNQNASSAVKEAIETLRANG---VDAFVLDLRDNS  235 (389)
T ss_pred             EEEEeccccchhHHHHHHHHHHHHHCC---CCEEEEEcCCCC
Confidence            554444444444556666665543222   345667888664

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=98.85  E-value=2.3e-08  Score=82.92  Aligned_cols=80  Identities=28%  Similarity=0.550  Sum_probs=63.0

Q ss_pred             CCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh--hCCCCeEEEEEec-Cc
Q psy6405          62 GNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL--KRGPPVEITLIKD-GA  138 (548)
Q Consensus        62 ~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l--k~g~~VtVtV~Rd-Gk  138 (548)
                      +.++|+.+...    ..+++|..|.++|||+++| |++||+|++|||.++.++++.+....+  ..+..+.+++.|. +.
T Consensus         1 ~~~lG~~~~~~----~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~~~~   75 (85)
T cd00988           1 FGGIGLELKYD----DGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRGDGE   75 (85)
T ss_pred             CeEEEEEEEEc----CCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcCCCC
Confidence            35789998753    3579999999999999999 999999999999999998555544333  3467788999887 66


Q ss_pred             ceeEEEec
Q psy6405         139 GLGFSLEG  146 (548)
Q Consensus       139 gLGfSItg  146 (548)
                      .+.+++.+
T Consensus        76 ~~~~~~~~   83 (85)
T cd00988          76 PREVTLTR   83 (85)
T ss_pred             EEEEEEEE
Confidence            66666653

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=98.74  E-value=9.5e-08  Score=78.29  Aligned_cols=79  Identities=44%  Similarity=0.752  Sum_probs=62.0

Q ss_pred             EEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCC-CeE
Q psy6405          52 SVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGP-PVE  130 (548)
Q Consensus        52 ~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~-~Vt  130 (548)
                      +.+.+.+.. ..+|||.+..+.+. ..+++|..|.++|||+++| |++||+|++|||.++..++..++...+.... .+.
T Consensus         2 ~~~~l~~~~-~~~~G~~~~~~~~~-~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~   78 (82)
T cd00992           2 RTVTLRKDP-GGGLGFSLRGGKDS-GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVT   78 (82)
T ss_pred             EEEEEEeCC-CCCcCEEEeCcccC-CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEE
Confidence            457777763 78999999866432 3579999999999999999 9999999999999999888877766665432 444


Q ss_pred             EEE
Q psy6405         131 ITL  133 (548)
Q Consensus       131 VtV  133 (548)
                      +++
T Consensus        79 l~v   81 (82)
T cd00992          79 LTV   81 (82)
T ss_pred             EEE
Confidence            443

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>TIGR00225 prc C-terminal peptidase (prc)

Probab=98.74  E-value=3.4e-08  Score=103.01  Aligned_cols=141  Identities=23%  Similarity=0.406  Sum_probs=91.2

Q ss_pred             CCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh--hCCCCeEEEEEecCcc
Q psy6405          62 GNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL--KRGPPVEITLIKDGAG  139 (548)
Q Consensus        62 ~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l--k~g~~VtVtV~RdGkg  139 (548)
                      ..++|+.+...    ..+++|..|.++|||+++| |++||+|++|||+++.+|+..+....+  ..+..+.+++.|++..
T Consensus        50 ~~~lG~~~~~~----~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~  124 (334)
T TIGR00225        50 LEGIGIQVGMD----DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGKS  124 (334)
T ss_pred             eEEEEEEEEEE----CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCCC
Confidence            45788888742    2479999999999999999 999999999999999998655544333  3577899999998776


Q ss_pred             eeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccccC
Q psy6405         140 LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDLN  219 (548)
Q Consensus       140 LGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDLr  219 (548)
                      ..++++...... ...++.. .+..          ..|..|..|.-.++..-...++.+.++.....   -+...++|+|
T Consensus       125 ~~~~v~l~~~~~-~~~~v~~-~~~~----------~~~~~igYi~i~~f~~~~~~~~~~~l~~l~~~---~~~~lIiDLR  189 (334)
T TIGR00225       125 KPLTFTLKRDRI-ELQTVKA-SVKK----------VGGKSVGYIRISSFSEHTTEDVKKALDKLEKK---NAKGYILDLR  189 (334)
T ss_pred             ceEEEEEEEEEe-eccceEE-EEEc----------CCCcEEEEEEEEecccchHHHHHHHHHHHHhc---cCceEEEEcC
Confidence            666554332110 0011221 1111          11346666665566555566766776664222   2345667888


Q ss_pred             CCC
Q psy6405         220 SLG  222 (548)
Q Consensus       220 ~~~  222 (548)
                      ...
T Consensus       190 ~N~  192 (334)
T TIGR00225       190 GNP  192 (334)
T ss_pred             CCC
Confidence            654

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.74  E-value=1.5e-07  Score=76.90  Aligned_cols=81  Identities=38%  Similarity=0.694  Sum_probs=64.1

Q ss_pred             EEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCCeE
Q psy6405          52 SVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPPVE  130 (548)
Q Consensus        52 ~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~Vt  130 (548)
                      ..+.+.+..  ..+||.+..+... ..+++|..|.++|||+++| |++||+|++|||..+.++++...+.... .+..+.
T Consensus         3 ~~~~~~~~~--~~~G~~~~~~~~~-~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~   78 (85)
T smart00228        3 RLVELEKGG--GGLGFSLVGGKDE-GGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVT   78 (85)
T ss_pred             EEEEEEECC--CcccEEEECCCCC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            456677762  8999999864321 1589999999999999999 9999999999999999998877655444 344778


Q ss_pred             EEEEec
Q psy6405         131 ITLIKD  136 (548)
Q Consensus       131 VtV~Rd  136 (548)
                      +++.|.
T Consensus        79 l~i~r~   84 (85)
T smart00228       79 LTVLRG   84 (85)
T ss_pred             EEEEeC
Confidence            887775

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.66  E-value=1.3e-07  Score=75.59  Aligned_cols=66  Identities=39%  Similarity=0.735  Sum_probs=53.3

Q ss_pred             ceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC--CCCeEEEE
Q psy6405          64 SVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR--GPPVEITL  133 (548)
Q Consensus        64 GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~--g~~VtVtV  133 (548)
                      ++||.+....+   .+++|..|.++|||+.+| |++||+|++|||.++.++++.++...++.  +..+++++
T Consensus         2 ~~G~~~~~~~~---~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136           2 GLGFSIRGGTE---GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CccEEEecCCC---CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            68999986543   489999999999999999 99999999999999999977766554442  35566654

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=98.64  E-value=1.9e-07  Score=76.67  Aligned_cols=76  Identities=30%  Similarity=0.453  Sum_probs=59.0

Q ss_pred             ceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEE
Q psy6405          64 SVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFS  143 (548)
Q Consensus        64 GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfS  143 (548)
                      .+|+.+...    +.+++|..|.++|||+++| |++||+|++|||.++.++..  .+.....+..+.+++.|++....+.
T Consensus         2 ~~G~~~~~~----~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~~~~--~l~~~~~~~~v~l~v~r~g~~~~~~   74 (80)
T cd00990           2 YLGLTLDKE----EGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDALQD--RLKEYQAGDPVELTVFRDDRLIEVP   74 (80)
T ss_pred             cccEEEEcc----CCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHHHHH--HHHhcCCCCEEEEEEEECCEEEEEE
Confidence            467777632    3579999999999999999 99999999999999987443  3334446778899999988766666


Q ss_pred             Eec
Q psy6405         144 LEG  146 (548)
Q Consensus       144 Itg  146 (548)
                      ++.
T Consensus        75 v~~   77 (80)
T cd00990          75 LTL   77 (80)
T ss_pred             EEe
Confidence            653

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3550|consensus

Probab=98.63  E-value=1.1e-07  Score=89.48  Aligned_cols=85  Identities=34%  Similarity=0.613  Sum_probs=75.7

Q ss_pred             CCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      ..+..|.+-+..+++||.|.++++..   ++|+|+.|.|++.|++.|.|+.||++++|||+++.+-.|+.++++|+++ .
T Consensus        89 ahprvvelpktdeglgfnvmggkeqn---spiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa-~  164 (207)
T KOG3550|consen   89 AHPRVVELPKTDEGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAA-V  164 (207)
T ss_pred             CCCceeecCccccccceeeccCcccC---CceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHh-c
Confidence            45678888899999999999998763   5899999999999999999999999999999999999999999999998 4


Q ss_pred             CceeEEEEe
Q psy6405         206 GTIQDIKAL  214 (548)
Q Consensus       206 ~~V~LlV~R  214 (548)
                      +.|.++|..
T Consensus       165 gsvklvvry  173 (207)
T KOG3550|consen  165 GSVKLVVRY  173 (207)
T ss_pred             CcEEEEEec
Confidence            567777764

>KOG3550|consensus

Probab=98.62  E-value=1.3e-07  Score=89.08  Aligned_cols=85  Identities=32%  Similarity=0.616  Sum_probs=72.7

Q ss_pred             CCCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-
Q psy6405          47 GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-  125 (548)
Q Consensus        47 ~~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-  125 (548)
                      +...++.|++.|.  ..|+||.+.||.+ ++.+++|+.|.||+.|++-|.|+-||++++|||++|.+-.|..++..++. 
T Consensus        87 ghahprvvelpkt--deglgfnvmggke-qnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa  163 (207)
T KOG3550|consen   87 GHAHPRVVELPKT--DEGLGFNVMGGKE-QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAA  163 (207)
T ss_pred             cCCCCceeecCcc--ccccceeeccCcc-cCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHh
Confidence            3467899999998  6999999999986 46799999999999999998899999999999999999999998877764 


Q ss_pred             CCCeEEEEE
Q psy6405         126 GPPVEITLI  134 (548)
Q Consensus       126 g~~VtVtV~  134 (548)
                      ...+.+.|.
T Consensus       164 ~gsvklvvr  172 (207)
T KOG3550|consen  164 VGSVKLVVR  172 (207)
T ss_pred             cCcEEEEEe
Confidence            334555554

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.61  E-value=2.7e-07  Score=75.37  Aligned_cols=66  Identities=32%  Similarity=0.593  Sum_probs=52.7

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEE
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSL  144 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSI  144 (548)
                      .+++|..|.++|||+++| |++||+|++|||.++.++...........+..+.+++.|++....+.+
T Consensus        12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~l~~~~~~~~~l~v~r~~~~~~~~l   77 (79)
T cd00989          12 IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKSWEDLVDAVQENPGKPLTLTVERNGETITLTL   77 (79)
T ss_pred             cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHHCCCceEEEEEEECCEEEEEEe
Confidence            468999999999999999 999999999999999988765533333346678899988776555544

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.58  E-value=2.3e-07  Score=77.25  Aligned_cols=67  Identities=27%  Similarity=0.355  Sum_probs=55.6

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHH-hhCCCCeEEEEEecCcceeEEEe
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAI-LKRGPPVEITLIKDGAGLGFSLE  145 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~-lk~g~~VtVtV~RdGkgLGfSIt  145 (548)
                      .+++|..|.++|||+++| |++||+|++|||.++.++........ ...+..+.+++.|+++...++++
T Consensus        10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~~~d~~~~l~~~~~g~~v~l~v~r~g~~~~~~~~   77 (79)
T cd00991          10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITTLEDFMEALKPTKPGEVITVTVLPSTTKLTNVST   77 (79)
T ss_pred             CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCCHHHHHHHHhcCCCCCEEEEEEEECCEEEEEEEE
Confidence            579999999999999999 99999999999999998876653333 33577899999998877766664

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.52  E-value=8e-07  Score=71.07  Aligned_cols=68  Identities=35%  Similarity=0.519  Sum_probs=57.9

Q ss_pred             ceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEE
Q psy6405         139 GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIK  212 (548)
Q Consensus       139 gLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV  212 (548)
                      .+||.+.....     .+++|..|.++|||+.+| |++||+|++|||.++.++++.++.++++...+..+.+.+
T Consensus         2 ~~G~~~~~~~~-----~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136           2 GLGFSIRGGTE-----GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CccEEEecCCC-----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            46777766543     259999999999999999 999999999999999999999999999988666777654

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=98.46  E-value=2.4e-06  Score=69.99  Aligned_cols=78  Identities=46%  Similarity=0.697  Sum_probs=63.3

Q ss_pred             EEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCce
Q psy6405         130 EITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI  208 (548)
Q Consensus       130 tVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V  208 (548)
                      .+++.|. ...+|+.+......   ..+++|..|.++|+|+++| |++||+|++|||.++..+++.++.+.++...+ .+
T Consensus         3 ~~~l~~~~~~~~G~~~~~~~~~---~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~-~v   77 (82)
T cd00992           3 TVTLRKDPGGGLGFSLRGGKDS---GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGD-EV   77 (82)
T ss_pred             EEEEEeCCCCCcCEEEeCcccC---CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCC-eE
Confidence            4667775 56799999865432   1369999999999999998 99999999999999999999999999998633 55


Q ss_pred             eEEE
Q psy6405         209 QDIK  212 (548)
Q Consensus       209 ~LlV  212 (548)
                      ++.+
T Consensus        78 ~l~v   81 (82)
T cd00992          78 TLTV   81 (82)
T ss_pred             EEEE
Confidence            5543

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>KOG3571|consensus

Probab=98.42  E-value=6.1e-07  Score=97.23  Aligned_cols=88  Identities=27%  Similarity=0.494  Sum_probs=74.3

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCC-CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh--
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDY-ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK--  124 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~-~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk--  124 (548)
                      ..++.+|.|..+. ..-||++|+|.... .+++++|.+|+++|+.+..||+.+||.|+.||.+...+|+-.++|..++  
T Consensus       247 slnIITV~LnMe~-vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREa  325 (626)
T KOG3571|consen  247 SLNIITVTLNMET-VNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREA  325 (626)
T ss_pred             ceeEEEEEecccc-cccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHH
Confidence            3578899998883 77799999985433 4679999999999999999999999999999999999999999886655  


Q ss_pred             --CCCCeEEEEEec
Q psy6405         125 --RGPPVEITLIKD  136 (548)
Q Consensus       125 --~g~~VtVtV~Rd  136 (548)
                        ...+++++|.+.
T Consensus       326 V~~~gPi~ltvAk~  339 (626)
T KOG3571|consen  326 VSRPGPIKLTVAKC  339 (626)
T ss_pred             hccCCCeEEEEeec
Confidence              345688888874

>PRK11186 carboxy-terminal protease; Provisional

Probab=98.42  E-value=3.3e-07  Score=104.04  Aligned_cols=166  Identities=17%  Similarity=0.238  Sum_probs=98.6

Q ss_pred             cCCCccCCCCCCCCeEEEEEeeCC----------CCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhc-CCCCCCCEEEE
Q psy6405          37 EGGCPSLLIPGTSEVSVVVLHRDL----------PGNSVGITLAGGSDYESKEITVHKVISGTPADRD-GRLQKGDRILS  105 (548)
Q Consensus        37 ~dgai~gml~~~~d~~tV~L~Kd~----------~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqA-GrLq~GDrILa  105 (548)
                      ++.++.+|+... ++++.++....          ...|+|+.+...    .+.++|..|.|||||+++ | |++||+|++
T Consensus       209 ~~~~i~~m~~~l-DphT~Y~sp~e~e~f~~~~~~~~~GIGa~l~~~----~~~~~V~~vipGsPA~ka~g-Lk~GD~Ila  282 (667)
T PRK11186        209 FQLAMNAFAREI-DPHTSYLSPRNAEQFNTEMNLSLEGIGAVLQMD----DDYTVINSLVAGGPAAKSKK-LSVGDKIVG  282 (667)
T ss_pred             HHHHHHHHHhCC-CCCccccChHHHHHhhhccCCceeEEEEEEEEe----CCeEEEEEccCCChHHHhCC-CCCCCEEEE
Confidence            445555555533 56655554432          356888888742    346899999999999998 7 999999999


Q ss_pred             EC--C---eeccCccHHHHHHHhh--CCCCeEEEEEecC---cceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCC
Q psy6405         106 IN--G---KSMKGLTHKESLAILK--RGPPVEITLIKDG---AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLK  175 (548)
Q Consensus       106 IN--G---v~V~~~s~~~aV~~lk--~g~~VtVtV~RdG---kgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq  175 (548)
                      ||  |   +++.+|+...++..++  .|..|.++|.|.+   ....++|++..-. +....+ -..|..         + 
T Consensus       283 Vn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~~~~~~~~~vtl~R~~i~-l~~~~~-k~~v~~---------~-  350 (667)
T PRK11186        283 VGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRIVTLTRDKIR-LEDRAV-KMSVKT---------V-  350 (667)
T ss_pred             ECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeCCCCCceEEEEEEeeeec-ccccce-EEEEEe---------c-
Confidence            99  4   3566888777766665  5777999998843   3455666543211 000001 011111         0 


Q ss_pred             CCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccccCCCCC
Q psy6405         176 AGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDLNSLGY  223 (548)
Q Consensus       176 ~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDLr~~~~  223 (548)
                      .+..|..|.-.++..-...++.+.++......   +...++|+|...-
T Consensus       351 ~~~kIGYI~I~sF~~~~~~d~~~~l~~l~~~~---v~gLIlDLR~NgG  395 (667)
T PRK11186        351 GGEKVGVLDIPGFYVGLTDDVKKQLQKLEKQN---VSGIIIDLRGNGG  395 (667)
T ss_pred             CCCcEEEEEecccccchHHHHHHHHHHHHHCC---CCEEEEEcCCCCC
Confidence            13344444433333334566767766653322   3455678886643

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.38  E-value=6.9e-06  Score=67.12  Aligned_cols=82  Identities=41%  Similarity=0.596  Sum_probs=66.4

Q ss_pred             eEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCce
Q psy6405         129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI  208 (548)
Q Consensus       129 VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V  208 (548)
                      ..+.+.+....+|+.+.......   .+++|..|.++|+|+++| |++||+|++||+..+.++++.++..+++.. +..+
T Consensus         3 ~~~~~~~~~~~~G~~~~~~~~~~---~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~-~~~~   77 (85)
T smart00228        3 RLVELEKGGGGLGFSLVGGKDEG---GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKA-GGKV   77 (85)
T ss_pred             EEEEEEECCCcccEEEECCCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeE
Confidence            45667777778899987654321   369999999999999999 999999999999999999988888888776 4477


Q ss_pred             eEEEEec
Q psy6405         209 QDIKALG  215 (548)
Q Consensus       209 ~LlV~Ri  215 (548)
                      .+.+.|.
T Consensus        78 ~l~i~r~   84 (85)
T smart00228       78 TLTVLRG   84 (85)
T ss_pred             EEEEEeC
Confidence            7777663

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=98.37  E-value=1.6e-06  Score=71.67  Aligned_cols=68  Identities=25%  Similarity=0.367  Sum_probs=55.0

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHH-HHhhCCCCeEEEEEecCcceeEEEecC
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL-AILKRGPPVEITLIKDGAGLGFSLEGG  147 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV-~~lk~g~~VtVtV~RdGkgLGfSItgg  147 (548)
                      .+++|..|.++|||+. | |++||+|++|||.++.++...... .....+..+.+++.|+++...++++..
T Consensus         8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~~~~~~~~l~~~~~~~~v~l~v~r~g~~~~~~v~l~   76 (79)
T cd00986           8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKEAEELIDYIQSKKEGDTVKLKVKREEKELPEDLILK   76 (79)
T ss_pred             cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEe
Confidence            4789999999999986 8 999999999999999988665533 333567789999999888777766543

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=98.35  E-value=1.6e-06  Score=72.19  Aligned_cols=63  Identities=40%  Similarity=0.634  Sum_probs=51.5

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHH-HHHhhCCCCeEEEEEecCccee
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES-LAILKRGPPVEITLIKDGAGLG  141 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~a-V~~lk~g~~VtVtV~RdGkgLG  141 (548)
                      .+++|..|.++|||+++| |++||+|++|||.++.+++.... +.....+..+.+++.|++..+.
T Consensus        24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~~~~~~~l~~~~~~~~i~l~v~r~g~~~~   87 (90)
T cd00987          24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSVADLRRALAELKPGDKVTLTVLRGGKELT   87 (90)
T ss_pred             CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEE
Confidence            479999999999999999 99999999999999998876553 3333347778899988775443

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3549|consensus

Probab=98.30  E-value=6e-07  Score=93.76  Aligned_cols=110  Identities=25%  Similarity=0.396  Sum_probs=87.8

Q ss_pred             CCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecC-cceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCC
Q psy6405          97 LQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDG-AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLK  175 (548)
Q Consensus        97 Lq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdG-kgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq  175 (548)
                      |+.--.|+.|...+|...+-.     .......+|++.|.. .++|++|+++.+..+   |++|+.|...-.|+..|.|-
T Consensus        29 L~Ltke~L~iQkqdVvcvsG~-----p~~s~eRtVtirRQ~vGGlGLSIKGGaEHn~---PvviSkI~kdQaAd~tG~LF  100 (505)
T KOG3549|consen   29 LNLTKELLSIQKQDVVCVSGP-----PMESKERTVTIRRQKVGGLGLSIKGGAEHNL---PVVISKIYKDQAADITGQLF  100 (505)
T ss_pred             hhhHHHHhhhhccceEecCCC-----CccCCceeEEEEeeecCcceeeeccccccCc---cEEeehhhhhhhhhhcCceE
Confidence            555566666666555444311     112455789998854 579999999987643   79999999999999999999


Q ss_pred             CCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEec
Q psy6405         176 AGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALG  215 (548)
Q Consensus       176 ~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ri  215 (548)
                      +||-|++|||+.|..+.|+|++.+||.+ +.+|+++|..-
T Consensus       101 vGDAilqvNGi~v~~c~HeevV~iLRNA-GdeVtlTV~~l  139 (505)
T KOG3549|consen  101 VGDAILQVNGIYVTACPHEEVVNILRNA-GDEVTLTVKHL  139 (505)
T ss_pred             eeeeeEEeccEEeecCChHHHHHHHHhc-CCEEEEEeHhh
Confidence            9999999999999999999999999998 78999998753

>KOG3551|consensus

Probab=98.29  E-value=1.1e-06  Score=92.81  Aligned_cols=86  Identities=29%  Similarity=0.492  Sum_probs=74.8

Q ss_pred             CeEEEEEe-cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         128 PVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       128 ~VtVtV~R-dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      ...|+|.+ +..++|++|+++++..   ++|.|++|.++-+|++++.|..||.|++|||.++...+|+|+++.|+.. ++
T Consensus        85 ~R~V~V~K~d~gGLGISIKGGreNk---MPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKra-Gk  160 (506)
T KOG3551|consen   85 ERRVRVVKQDAGGLGISIKGGRENK---MPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRA-GK  160 (506)
T ss_pred             cceeEEEEecCCcceEEeecCcccC---CceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhh-Cc
Confidence            35677665 7789999999998764   5899999999999999999999999999999999999999999999998 67


Q ss_pred             ceeEEEEeccc
Q psy6405         207 TIQDIKALGYD  217 (548)
Q Consensus       207 ~V~LlV~RilD  217 (548)
                      +|.+.|...-+
T Consensus       161 eV~levKy~RE  171 (506)
T KOG3551|consen  161 EVLLEVKYMRE  171 (506)
T ss_pred             eeeeeeeeehh
Confidence            77777765433

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=98.27  E-value=2.3e-06  Score=71.44  Aligned_cols=72  Identities=26%  Similarity=0.343  Sum_probs=55.9

Q ss_pred             eeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHH-HcCCCceeEEEEecccc
Q psy6405         140 LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLK-KLNDGTIQDIKALGYDL  218 (548)
Q Consensus       140 LGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLr-s~~g~~V~LlV~RilDL  218 (548)
                      +|+.+......    .++.|.+|.++|||+++| |++||+|++|||.++.++.  ++...+. ..++.++.+.+.|....
T Consensus         3 lGv~~~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~--~~~~~l~~~~~g~~v~l~v~R~g~~   75 (82)
T PF13180_consen    3 LGVTVQNLSDT----GGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNSSE--DLVNILSKGKPGDTVTLTVLRDGEE   75 (82)
T ss_dssp             -SEEEEECSCS----SSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSSHH--HHHHHHHCSSTTSEEEEEEEETTEE
T ss_pred             ECeEEEEccCC----CeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCCHH--HHHHHHHhCCCCCEEEEEEEECCEE
Confidence            45556544331    369999999999999999 9999999999999997665  7777774 45678999999997654

...

>KOG3549|consensus

Probab=98.25  E-value=1.8e-06  Score=90.24  Aligned_cols=84  Identities=29%  Similarity=0.508  Sum_probs=75.1

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGP  127 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~  127 (548)
                      ..-++|.++|. +-+|||++|.||.++ +-+|+|+.|.....|+..|.|-+||-|++|||.-|+.+.|++++..++ .|+
T Consensus        53 s~eRtVtirRQ-~vGGlGLSIKGGaEH-n~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGd  130 (505)
T KOG3549|consen   53 SKERTVTIRRQ-KVGGLGLSIKGGAEH-NLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGD  130 (505)
T ss_pred             CCceeEEEEee-ecCcceeeecccccc-CccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCC
Confidence            34588999888 489999999999875 568999999999999999999999999999999999999999998776 578


Q ss_pred             CeEEEEE
Q psy6405         128 PVEITLI  134 (548)
Q Consensus       128 ~VtVtV~  134 (548)
                      .++++|.
T Consensus       131 eVtlTV~  137 (505)
T KOG3549|consen  131 EVTLTVK  137 (505)
T ss_pred             EEEEEeH
Confidence            8888886

>KOG3553|consensus

Probab=98.24  E-value=4.9e-07  Score=79.93  Aligned_cols=71  Identities=28%  Similarity=0.535  Sum_probs=59.4

Q ss_pred             ceEEEEEeCCCCC---------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEE
Q psy6405          64 SVGITLAGGSDYE---------SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLI  134 (548)
Q Consensus        64 GLGfsIagG~d~~---------~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~  134 (548)
                      .+||.|-||.|..         +.+++|+.|.+||||+.|| |+.+|.|+.|||-+..-++|..++..++....+.+.|.
T Consensus        36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k~~vl~mLVa  114 (124)
T KOG3553|consen   36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITKEEVLRMLVA  114 (124)
T ss_pred             EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhHhHHHHHHHH
Confidence            5899999886642         4699999999999999999 99999999999999999999999877765554444444


Q ss_pred             e
Q psy6405         135 K  135 (548)
Q Consensus       135 R  135 (548)
                      |
T Consensus       115 R  115 (124)
T KOG3553|consen  115 R  115 (124)
T ss_pred             h
Confidence            4

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=98.23  E-value=4.2e-06  Score=69.36  Aligned_cols=70  Identities=29%  Similarity=0.442  Sum_probs=57.6

Q ss_pred             ceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEec
Q psy6405         139 GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALG  215 (548)
Q Consensus       139 gLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ri  215 (548)
                      ++|+.+....      .+++|..|.++|||+++| |++||+|++|||.++.++++.++...++...+..+.+.+.|.
T Consensus         3 ~lG~~~~~~~------~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988           3 GIGLELKYDD------GGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             EEEEEEEEcC------CeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            4566665432      258999999999999999 999999999999999999877888888776566788888775

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=98.14  E-value=9.8e-06  Score=82.65  Aligned_cols=80  Identities=16%  Similarity=0.260  Sum_probs=64.4

Q ss_pred             ceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeE
Q psy6405          64 SVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGF  142 (548)
Q Consensus        64 GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGf  142 (548)
                      .+|+......+ ...++.|..+.++|||+++| |++||+|++|||.++.++.... ++..++.+..+.|+|.|+|+...+
T Consensus       178 ~lgi~p~~~~g-~~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~~~~~~~l~~~~~~~~v~l~V~R~G~~~~i  255 (259)
T TIGR01713       178 YIRLSPVMKND-KLEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDPEQAFQALQMLREETNLTLTVERDGQREDI  255 (259)
T ss_pred             eEeEEEEEeCC-ceeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCeEEEEEEECCEEEEE
Confidence            56777653222 13589999999999999999 9999999999999999987765 455666778899999999887766


Q ss_pred             EEe
Q psy6405         143 SLE  145 (548)
Q Consensus       143 SIt  145 (548)
                      .+.
T Consensus       256 ~v~  258 (259)
T TIGR01713       256 YVR  258 (259)
T ss_pred             EEE
Confidence            654

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>KOG3551|consensus

Probab=98.12  E-value=3.4e-06  Score=89.22  Aligned_cols=81  Identities=32%  Similarity=0.555  Sum_probs=70.7

Q ss_pred             EEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCCeE
Q psy6405          52 SVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPPVE  130 (548)
Q Consensus        52 ~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~Vt  130 (548)
                      +.|.+.|. +.+|+|++|.||.+. .-++.|+.|.+|-.|++++.|..||.|++|||.++...+|+++++.++ .|+.|.
T Consensus        86 R~V~V~K~-d~gGLGISIKGGreN-kMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~  163 (506)
T KOG3551|consen   86 RRVRVVKQ-DAGGLGISIKGGREN-KMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVL  163 (506)
T ss_pred             ceeEEEEe-cCCcceEEeecCccc-CCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceee
Confidence            77888887 489999999999874 368999999999999999999999999999999999999999988776 466666


Q ss_pred             EEEE
Q psy6405         131 ITLI  134 (548)
Q Consensus       131 VtV~  134 (548)
                      +.|.
T Consensus       164 levK  167 (506)
T KOG3551|consen  164 LEVK  167 (506)
T ss_pred             eeee
Confidence            6654

>KOG1892|consensus

Probab=98.10  E-value=7.9e-06  Score=93.70  Aligned_cols=88  Identities=32%  Similarity=0.647  Sum_probs=73.0

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEE--eCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh-h
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLA--GGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL-K  124 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIa--gG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l-k  124 (548)
                      +.++..|.|.|.   .|+|++|+  .|.+...-+|+|.+|++|++|+..|||..||++++|||.++.+.+.+.+...+ +
T Consensus       931 ~pei~~vtL~Kn---nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtr 1007 (1629)
T KOG1892|consen  931 EPEIITVTLKKN---NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTR 1007 (1629)
T ss_pred             CCceEEEEEecc---CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhc
Confidence            456788888886   78888886  34444456999999999999999999999999999999999999999876544 4


Q ss_pred             CCCCeEEEEEecCc
Q psy6405         125 RGPPVEITLIKDGA  138 (548)
Q Consensus       125 ~g~~VtVtV~RdGk  138 (548)
                      .|..|.+.|.+.|.
T Consensus      1008 tg~vV~leVaKqgA 1021 (1629)
T KOG1892|consen 1008 TGNVVHLEVAKQGA 1021 (1629)
T ss_pred             cCCeEEEehhhhhh
Confidence            68889999987653

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=98.01  E-value=1.4e-05  Score=86.24  Aligned_cols=75  Identities=24%  Similarity=0.239  Sum_probs=64.8

Q ss_pred             cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEec
Q psy6405         136 DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALG  215 (548)
Q Consensus       136 dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ri  215 (548)
                      .-.++|+.+.....     ..+.|.++.+++||+++| |++||+|+.|||.++.+++..++++.+++.+++.|++++.|.
T Consensus        98 ~~~GiG~~i~~~~~-----~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~  171 (406)
T COG0793          98 EFGGIGIELQMEDI-----GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA  171 (406)
T ss_pred             cccceeEEEEEecC-----CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence            33566777765442     148899999999999999 999999999999999999999999999999999999999996


Q ss_pred             c
Q psy6405         216 Y  216 (548)
Q Consensus       216 l  216 (548)
                      .
T Consensus       172 ~  172 (406)
T COG0793         172 G  172 (406)
T ss_pred             C
Confidence            3

>KOG3553|consensus

Probab=98.00  E-value=1.1e-05  Score=71.54  Aligned_cols=72  Identities=32%  Similarity=0.476  Sum_probs=59.2

Q ss_pred             eeEEEecCCCC-----CC--CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEE
Q psy6405         140 LGFSLEGGKDS-----PF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIK  212 (548)
Q Consensus       140 LGfSItgg~~s-----~l--G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV  212 (548)
                      +||+|-++.+.     ++  ...+++|+.|.++|||+.+| |+.+|.|++|||..++-++|+.+++.|++.  ..+.++|
T Consensus        37 ~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k~--~vl~mLV  113 (124)
T KOG3553|consen   37 LGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITKE--EVLRMLV  113 (124)
T ss_pred             EEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhHh--HHHHHHH
Confidence            68888776543     22  23589999999999999999 999999999999999999999999999874  3445555


Q ss_pred             Ee
Q psy6405         213 AL  214 (548)
Q Consensus       213 ~R  214 (548)
                      .|
T Consensus       114 aR  115 (124)
T KOG3553|consen  114 AR  115 (124)
T ss_pred             Hh
Confidence            44

>KOG3651|consensus

Probab=97.98  E-value=2.5e-05  Score=80.75  Aligned_cols=82  Identities=35%  Similarity=0.567  Sum_probs=68.9

Q ss_pred             EEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCCeE
Q psy6405          52 SVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPPVE  130 (548)
Q Consensus        52 ~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~Vt  130 (548)
                      ..|+++|+ ...-+|++|-||..+. +.++|..|..++||++.|+++.||.|++|||++|++.+..++...+. .-.+++
T Consensus         6 ~~v~ltKD-~~nliGISIGGGapyC-PClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~   83 (429)
T KOG3651|consen    6 ETVELTKD-EKNLIGISIGGGAPYC-PCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVK   83 (429)
T ss_pred             CcEEEeec-cccceeEEecCCCCcC-CeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceE
Confidence            46889998 4778999999998775 67899999999999999999999999999999999998887654443 346677


Q ss_pred             EEEEe
Q psy6405         131 ITLIK  135 (548)
Q Consensus       131 VtV~R  135 (548)
                      |.+.+
T Consensus        84 IhyNK   88 (429)
T KOG3651|consen   84 IHYNK   88 (429)
T ss_pred             EEehh
Confidence            77765

>TIGR00054 RIP metalloprotease RseP

Probab=97.97  E-value=2.1e-05  Score=85.13  Aligned_cols=69  Identities=30%  Similarity=0.468  Sum_probs=58.8

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEEecC
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGG  147 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg  147 (548)
                      .+++|..|.++|||+++| |++||+|++|||+++.++.+.........+.++.+++.|+++.+.++++..
T Consensus       203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s~~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~  271 (420)
T TIGR00054       203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRSWTDFVSAVKENPGKSMDIKVERNGETLSISLTPE  271 (420)
T ss_pred             cCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHhCCCCceEEEEEECCEEEEEEEEEc
Confidence            368999999999999999 999999999999999999776654444567789999999998877777654

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>KOG3571|consensus

Probab=97.95  E-value=3.4e-05  Score=84.06  Aligned_cols=90  Identities=31%  Similarity=0.489  Sum_probs=72.6

Q ss_pred             eEEEEEecCcc-eeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc--CC
Q psy6405         129 VEITLIKDGAG-LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL--ND  205 (548)
Q Consensus       129 VtVtV~RdGkg-LGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~--~g  205 (548)
                      ++|++.-+... +|++|.+.... -|+.+|||.+|.++|+.+..|||.+||.|++||.+++.+++-.++|..||..  ..
T Consensus       251 ITV~LnMe~vnfLGiSivgqsn~-rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~  329 (626)
T KOG3571|consen  251 ITVTLNMETVNFLGISIVGQSNA-RGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRP  329 (626)
T ss_pred             EEEEecccccccceeEeecccCc-CCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccC
Confidence            44444434344 78898875433 2445899999999999999999999999999999999999999999999986  34


Q ss_pred             CceeEEEEeccccC
Q psy6405         206 GTIQDIKALGYDLN  219 (548)
Q Consensus       206 ~~V~LlV~RilDLr  219 (548)
                      .+++++|....|..
T Consensus       330 gPi~ltvAk~~DP~  343 (626)
T KOG3571|consen  330 GPIKLTVAKCWDPN  343 (626)
T ss_pred             CCeEEEEeeccCCC
Confidence            57899998887744

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=97.92  E-value=2.7e-05  Score=84.78  Aligned_cols=68  Identities=25%  Similarity=0.463  Sum_probs=57.9

Q ss_pred             CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEEecC
Q psy6405          79 EITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGG  147 (548)
Q Consensus        79 gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg  147 (548)
                      +++|..|.++|||+++| |++||+|++|||+++.+|.+.........+..+.+++.|+++...++++..
T Consensus       222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~s~~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~  289 (449)
T PRK10779        222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLTQWQTFVTLVRDNPGKPLALEIERQGSPLSLTLTPD  289 (449)
T ss_pred             CcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhCCCCEEEEEEEECCEEEEEEEEee
Confidence            57899999999999999 999999999999999998877654444567789999999998877777653

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=97.90  E-value=3.2e-05  Score=81.77  Aligned_cols=69  Identities=26%  Similarity=0.399  Sum_probs=59.3

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeEEEecC
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGFSLEGG  147 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGfSItgg  147 (548)
                      .+++|..|.++|||+++| |++||+|++|||+++.++.... .+.....+..+.+++.|+++...++++.+
T Consensus       278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~  347 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIGAEELMDRIAETRPGSKVMVTVLRQGKQLELPVTID  347 (351)
T ss_pred             ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEec
Confidence            479999999999999999 9999999999999999987765 44455678889999999988877777654

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10898 serine endoprotease; Provisional

Probab=97.90  E-value=3.7e-05  Score=81.47  Aligned_cols=69  Identities=23%  Similarity=0.384  Sum_probs=59.1

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeEEEecC
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGFSLEGG  147 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGfSItgg  147 (548)
                      .+++|..|.++|||+++| |++||+|++|||+++.++.+.. .+.....+..+.+++.|+++.+.+.++.+
T Consensus       279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~  348 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQ  348 (353)
T ss_pred             CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEec
Confidence            589999999999999999 9999999999999999886654 45555678889999999988877777654

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=97.89  E-value=3.5e-05  Score=64.15  Aligned_cols=59  Identities=24%  Similarity=0.294  Sum_probs=50.2

Q ss_pred             CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEecc
Q psy6405         155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALGY  216 (548)
Q Consensus       155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~Ril  216 (548)
                      .++.|.+|.++|||+++| |+.||+|++|||.++.++.  ++...+... .+..+.+.+.|..
T Consensus        10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~~~--d~~~~l~~~~~g~~v~l~v~r~g   69 (79)
T cd00991          10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITTLE--DFMEALKPTKPGEVITVTVLPST   69 (79)
T ss_pred             CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCCHH--HHHHHHhcCCCCCEEEEEEEECC
Confidence            368999999999999999 9999999999999999766  787888765 3667888887754

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=97.89  E-value=5.9e-05  Score=61.50  Aligned_cols=58  Identities=22%  Similarity=0.270  Sum_probs=48.9

Q ss_pred             CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEecc
Q psy6405         156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGY  216 (548)
Q Consensus       156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ril  216 (548)
                      ++.|..|.++|+|+++| |++||+|++|||.++.++.  ++...++...+..+.+.+.|..
T Consensus        13 ~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~--~~~~~l~~~~~~~~~l~v~r~~   70 (79)
T cd00989          13 EPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKSWE--DLVDAVQENPGKPLTLTVERNG   70 (79)
T ss_pred             CcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCCHH--HHHHHHHHCCCceEEEEEEECC
Confidence            47899999999999999 9999999999999999765  7778887765567777777643

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=97.87  E-value=5.4e-05  Score=81.17  Aligned_cols=61  Identities=26%  Similarity=0.327  Sum_probs=55.0

Q ss_pred             CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccc
Q psy6405         156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYD  217 (548)
Q Consensus       156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilD  217 (548)
                      ++.|..|.++|||+++| |+.||+|++|||+++.+++..++..+++...+..+.+.+.|...
T Consensus       103 g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~  163 (389)
T PLN00049        103 GLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGPE  163 (389)
T ss_pred             cEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            58899999999999999 99999999999999999888888888987778889999888654

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=97.83  E-value=0.00011  Score=79.93  Aligned_cols=116  Identities=22%  Similarity=0.289  Sum_probs=75.2

Q ss_pred             EEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEE-ecCcceeEEEecCCCCCCCCC-----
Q psy6405          82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLI-KDGAGLGFSLEGGKDSPFGDQ-----  155 (548)
Q Consensus        82 Vs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~-RdGkgLGfSItgg~~s~lG~~-----  155 (548)
                      |..|.|+|||+++| |++||+|++|||+++.+|.......   .+..+.++|. |+|+.+.+.+.......+|..     
T Consensus         2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~Dw~D~~~~l---~~e~l~L~V~~rdGe~~~l~Ie~~~dedlG~~f~~~~   77 (433)
T TIGR03279         2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRDLIDYQFLC---ADEELELEVLDANGESHQIEIEKDLDEDLGLEFTTAL   77 (433)
T ss_pred             cCCcCCCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHh---cCCcEEEEEEcCCCeEEEEEEecCCCCCCcEEecccc
Confidence            57799999999999 9999999999999999997754322   3466888886 677777777776554444321     


Q ss_pred             ----------Ce--EEEEeccCChhhhcCCCCCCCE---EEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         156 ----------PL--TVKKIFTGGCAEKNGQLKAGDE---ILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       156 ----------gI--~VssV~pgSpAekaGrLq~GDr---ILaVNGvsV~~~t~~EavelLrs~  203 (548)
                                .+  +|....+|. -+ .-.++-.|.   .++=|.+++++++..+...+++..
T Consensus        78 ~d~~~~C~N~C~FCFidQlP~gm-R~-sLY~KDDDyRLSFL~GnyiTLTNl~~~d~~RI~~~~  138 (433)
T TIGR03279        78 FDGLIQCNNRCPFCFIDQQPPGK-RE-SLYLKDDDYRLSFLYGSYLTLTNLPPAEWQRIEQLR  138 (433)
T ss_pred             CCcccccCCcCceEeccCCCCCC-cC-cceeccCcchhhhhccceeeecCCCHHHHHHHHHcC
Confidence                      00  111111111 00 011344443   344477889999988877776653

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=97.80  E-value=6.6e-05  Score=82.58  Aligned_cols=121  Identities=22%  Similarity=0.319  Sum_probs=82.8

Q ss_pred             hhccHHHHHHhhhccccccccCCCccCCCCCCCCe--------EEEEEee-CCCCCceEEEEEeCCCCCCCCeEEEEEcC
Q psy6405          17 SLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEV--------SVVVLHR-DLPGNSVGITLAGGSDYESKEITVHKVIS   87 (548)
Q Consensus        17 Slis~~yv~~~ieev~~~~~~dgai~gml~~~~d~--------~tV~L~K-d~~~~GLGfsIagG~d~~~~gVvVs~V~p   87 (548)
                      +-+++++++.+++++ .+.+....++..+.+..++        ..+.+.. ..+..+||+.+.    ..++..+|..|.+
T Consensus       397 ~~~t~e~v~av~~~~-tg~dl~~f~~~~i~~~~~~~l~~~l~~~gL~~~~~~~~~~~LGl~v~----~~~g~~~i~~V~~  471 (558)
T COG3975         397 RGYTPEDVQAVLENV-TGLDLATFFDEYIEGTEPPPLNPLLERFGLTFTPKPREAYYLGLKVK----SEGGHEKITFVFP  471 (558)
T ss_pred             cCCCHHHHHHHHHhh-ccccHHHHHHHHhhcCCCCChhhhhhhcceEEEecCCCCcccceEec----ccCCeeEEEecCC
Confidence            344666777777777 4444444444444433222        2333322 223458999887    3346789999999


Q ss_pred             CChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEEecCCCC
Q psy6405          88 GTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDS  150 (548)
Q Consensus        88 GSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg~~s  150 (548)
                      +|||++|| |.+||+|++|||.+-       .....+.+..+.|.+.|.+.-..+.|+.+...
T Consensus       472 ~gPA~~AG-l~~Gd~ivai~G~s~-------~l~~~~~~d~i~v~~~~~~~L~e~~v~~~~~~  526 (558)
T COG3975         472 GGPAYKAG-LSPGDKIVAINGISD-------QLDRYKVNDKIQVHVFREGRLREFLVKLGGDP  526 (558)
T ss_pred             CChhHhcc-CCCccEEEEEcCccc-------cccccccccceEEEEccCCceEEeecccCCCc
Confidence            99999999 999999999999811       12334567889999999999888888776544

>TIGR00225 prc C-terminal peptidase (prc)

Probab=97.75  E-value=6.3e-05  Score=78.71  Aligned_cols=73  Identities=26%  Similarity=0.339  Sum_probs=59.7

Q ss_pred             ceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEecccc
Q psy6405         139 GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDL  218 (548)
Q Consensus       139 gLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDL  218 (548)
                      ++|+.+....      .++.|..|.++|||+++| |++||+|++|||.++.+++..++...++...+..+.+.+.|....
T Consensus        52 ~lG~~~~~~~------~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~  124 (334)
T TIGR00225        52 GIGIQVGMDD------GEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGKS  124 (334)
T ss_pred             EEEEEEEEEC------CEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCCC
Confidence            4666665432      148899999999999999 999999999999999999877888888776677888888886543

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>KOG1892|consensus

Probab=97.72  E-value=7.5e-05  Score=86.01  Aligned_cols=86  Identities=26%  Similarity=0.435  Sum_probs=71.2

Q ss_pred             CeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCc
Q psy6405         128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGT  207 (548)
Q Consensus       128 ~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~  207 (548)
                      .++|++.+. .++|++|.......-...||||++|.+|++|+..|||+.||++++|||.++.+.+.+.+.+++... +..
T Consensus       934 i~~vtL~Kn-nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrt-g~v 1011 (1629)
T KOG1892|consen  934 IITVTLKKN-NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRT-GNV 1011 (1629)
T ss_pred             eEEEEEecc-CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhcc-CCe
Confidence            367777776 889999976543322234799999999999999999999999999999999999999999999876 677


Q ss_pred             eeEEEEec
Q psy6405         208 IQDIKALG  215 (548)
Q Consensus       208 V~LlV~Ri  215 (548)
                      |.+.|...
T Consensus      1012 V~leVaKq 1019 (1629)
T KOG1892|consen 1012 VHLEVAKQ 1019 (1629)
T ss_pred             EEEehhhh
Confidence            88877643

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=97.70  E-value=9e-05  Score=80.02  Aligned_cols=64  Identities=38%  Similarity=0.599  Sum_probs=54.0

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHH-HHHhhCCCCeEEEEEecCcceeE
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES-LAILKRGPPVEITLIKDGAGLGF  142 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~a-V~~lk~g~~VtVtV~RdGkgLGf  142 (548)
                      .+++|..|.++|||+++| |++||+|++|||+++.++.+... +...+.+..+.++|.|++..+-+
T Consensus       362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s~~d~~~~l~~~~~g~~v~l~v~R~g~~~~~  426 (428)
T TIGR02037       362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSSVAELRKVLDRAKKGGRVALLILRGGATIFV  426 (428)
T ss_pred             CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEE
Confidence            579999999999999999 99999999999999999876664 34445678899999998775433

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=97.65  E-value=0.00014  Score=60.49  Aligned_cols=58  Identities=29%  Similarity=0.381  Sum_probs=48.6

Q ss_pred             CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC-CCceeEEEEecc
Q psy6405         156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN-DGTIQDIKALGY  216 (548)
Q Consensus       156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~-g~~V~LlV~Ril  216 (548)
                      +++|..|.++|||+++| |+.||+|++|||.++.++.  ++.+.+.... +..+.+.+.|..
T Consensus        25 g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~~--~~~~~l~~~~~~~~i~l~v~r~g   83 (90)
T cd00987          25 GVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSVA--DLRRALAELKPGDKVTLTVLRGG   83 (90)
T ss_pred             EEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCHH--HHHHHHHhcCCCCEEEEEEEECC
Confidence            68999999999999999 9999999999999999876  6667776653 567777777653

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=97.65  E-value=0.00025  Score=58.14  Aligned_cols=55  Identities=24%  Similarity=0.235  Sum_probs=43.9

Q ss_pred             CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEecc
Q psy6405         156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALGY  216 (548)
Q Consensus       156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~Ril  216 (548)
                      ++.|..|.++|+|+++| |++||+|++|||.++.++.     ++++.. .+..+.+.+.|..
T Consensus        13 ~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~~~-----~~l~~~~~~~~v~l~v~r~g   68 (80)
T cd00990          13 LGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDALQ-----DRLKEYQAGDPVELTVFRDD   68 (80)
T ss_pred             cEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHHHH-----HHHHhcCCCCEEEEEEEECC
Confidence            48899999999999999 9999999999999988632     345443 4567777777654

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PRK10139 serine endoprotease; Provisional

Probab=97.61  E-value=0.00016  Score=79.29  Aligned_cols=65  Identities=23%  Similarity=0.469  Sum_probs=53.3

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEE
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSL  144 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSI  144 (548)
                      .+++|..|.++|||+++| |++||+|++|||+++.+|.....+.... ...+.+++.|++..+-+.+
T Consensus       390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~l~~~-~~~v~l~v~R~g~~~~~~~  454 (455)
T PRK10139        390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSIAEMRKVLAAK-PAIIALQIVRGNESIYLLL  454 (455)
T ss_pred             CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhC-CCeEEEEEEECCEEEEEEe
Confidence            478999999999999999 9999999999999999998766443333 3678899999887655443

>KOG1421|consensus

Probab=97.61  E-value=0.00032  Score=79.03  Aligned_cols=121  Identities=21%  Similarity=0.308  Sum_probs=93.4

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEEecCCCCC------
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSP------  151 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg~~s~------  151 (548)
                      +-++|..|.++|||++.  |++||.+++||+..+.++.....+.-...|+.+.++|.|.|+.+.++++.+....      
T Consensus       303 gmLvV~~vL~~gpa~k~--Le~GDillavN~t~l~df~~l~~iLDegvgk~l~LtI~Rggqelel~vtvqdlh~itp~R~  380 (955)
T KOG1421|consen  303 GMLVVETVLPEGPAEKK--LEPGDILLAVNSTCLNDFEALEQILDEGVGKNLELTIQRGGQELELTVTVQDLHGITPDRF  380 (955)
T ss_pred             eeEEEEEeccCCchhhc--cCCCcEEEEEcceehHHHHHHHHHHhhccCceEEEEEEeCCEEEEEEEEeccccCCCCceE
Confidence            35688999999999875  9999999999988887776555444445788999999999998888886543211      


Q ss_pred             --------------------CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         152 --------------------FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       152 --------------------lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                                          +...+++|.+-. ++++...+ .. |-.|.+|+++++....  .+++.++..+.
T Consensus       381 levcGav~hdlsyq~ar~y~lP~~GvyVa~~~-gsf~~~~~-~y-~~ii~~vanK~tPdLd--aFidvlk~L~d  449 (955)
T KOG1421|consen  381 LEVCGAVFHDLSYQLARLYALPVEGVYVASPG-GSFRHRGP-RY-GQIIDSVANKPTPDLD--AFIDVLKELPD  449 (955)
T ss_pred             EEEcceEecCCCHHHHhhcccccCcEEEccCC-CCccccCC-cc-eEEEEeecCCcCCCHH--HHHHHHHhccC
Confidence                                122478887765 78887776 34 8899999999988766  88888888753

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=97.59  E-value=0.0002  Score=59.15  Aligned_cols=58  Identities=22%  Similarity=0.272  Sum_probs=48.0

Q ss_pred             CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHH-cCCCceeEEEEeccc
Q psy6405         156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK-LNDGTIQDIKALGYD  217 (548)
Q Consensus       156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs-~~g~~V~LlV~RilD  217 (548)
                      ++.|..|.++|+|+. | |++||+|++|||.++.++.  ++.+++.. ..+..+.+.+.|...
T Consensus         9 Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~~~--~~~~~l~~~~~~~~v~l~v~r~g~   67 (79)
T cd00986           9 GVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKEAE--ELIDYIQSKKEGDTVKLKVKREEK   67 (79)
T ss_pred             CEEEEEECCCCchhh-C-CCCCCEEEEECCEECCCHH--HHHHHHHhCCCCCEEEEEEEECCE
Confidence            588999999999986 7 9999999999999999765  77788875 346678888877543

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3552|consensus

Probab=97.55  E-value=7.7e-05  Score=85.79  Aligned_cols=77  Identities=30%  Similarity=0.563  Sum_probs=64.6

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-CCC
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPP  128 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-g~~  128 (548)
                      +++.|.++|.   ..+||.++-|     .+|+|..|.+|||+  .|+|++||+|++|||.+|+....+.++..++. ...
T Consensus        55 ~pr~vq~~r~---~~lGFgfvag-----rPviVr~VT~GGps--~GKL~PGDQIl~vN~Epv~daprervIdlvRace~s  124 (1298)
T KOG3552|consen   55 EPRQVQLQRN---ASLGFGFVAG-----RPVIVRFVTEGGPS--IGKLQPGDQILAVNGEPVKDAPRERVIDLVRACESS  124 (1298)
T ss_pred             cchhhhhhcc---ccccceeecC-----CceEEEEecCCCCc--cccccCCCeEEEecCcccccccHHHHHHHHHHHhhh
Confidence            5888999887   5777777754     47999999999999  48899999999999999999999888877774 345


Q ss_pred             eEEEEEec
Q psy6405         129 VEITLIKD  136 (548)
Q Consensus       129 VtVtV~Rd  136 (548)
                      +.++|.+.
T Consensus       125 v~ltV~qP  132 (1298)
T KOG3552|consen  125 VNLTVCQP  132 (1298)
T ss_pred             cceEEecc
Confidence            88888874

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=97.53  E-value=0.00036  Score=75.35  Aligned_cols=78  Identities=28%  Similarity=0.483  Sum_probs=59.5

Q ss_pred             CCceEEEEEeCCCCCCCCeEEEEEc--------CCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEE
Q psy6405          62 GNSVGITLAGGSDYESKEITVHKVI--------SGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITL  133 (548)
Q Consensus        62 ~~GLGfsIagG~d~~~~gVvVs~V~--------pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV  133 (548)
                      +..+|+.+.      ..+|+|....        .+|||+++| |++||+|++|||.++.+|.+...+.....+..+.+++
T Consensus        95 G~~iGI~l~------t~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s~~DL~~iL~~~~g~~V~LtV  167 (402)
T TIGR02860        95 GQSIGVKLN------TKGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKNMDDLANLINKAGGEKLTLTI  167 (402)
T ss_pred             CEEEEEEEe------cCEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHhCCCCeEEEEE
Confidence            456777776      2467775543        268999999 9999999999999999998766443333477899999


Q ss_pred             EecCcceeEEEec
Q psy6405         134 IKDGAGLGFSLEG  146 (548)
Q Consensus       134 ~RdGkgLGfSItg  146 (548)
                      .|+++.+.+++++
T Consensus       168 ~R~Ge~~tv~V~P  180 (402)
T TIGR02860       168 ERGGKIIETVIKP  180 (402)
T ss_pred             EECCEEEEEEEEE
Confidence            9988877777763

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>PRK10942 serine endoprotease; Provisional

Probab=97.51  E-value=0.00025  Score=78.03  Aligned_cols=64  Identities=25%  Similarity=0.399  Sum_probs=52.8

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEE
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFS  143 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfS  143 (548)
                      .+++|..|.++|+|+++| |++||+|++|||++|.++.....+.... ...+.++|.|.+..+-+.
T Consensus       408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s~~dl~~~l~~~-~~~v~l~V~R~g~~~~v~  471 (473)
T PRK10942        408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKNIAELRKILDSK-PSVLALNIQRGDSSIYLL  471 (473)
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhC-CCeEEEEEEECCEEEEEE
Confidence            479999999999999999 9999999999999999997766443333 367889999988765444

>KOG3651|consensus

Probab=97.49  E-value=0.00044  Score=71.71  Aligned_cols=79  Identities=24%  Similarity=0.425  Sum_probs=65.4

Q ss_pred             EEEEEecCcc-eeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCce
Q psy6405         130 EITLIKDGAG-LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI  208 (548)
Q Consensus       130 tVtV~RdGkg-LGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V  208 (548)
                      +|++.++.+. +|++|-++..--   .-++|..|..++||++.|+++.||.|++|||++|.+.+-.++.++|+.. ..+|
T Consensus         7 ~v~ltKD~~nliGISIGGGapyC---PClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~-~~eV   82 (429)
T KOG3651|consen    7 TVELTKDEKNLIGISIGGGAPYC---PCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVS-LNEV   82 (429)
T ss_pred             cEEEeeccccceeEEecCCCCcC---CeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHh-ccce
Confidence            5677776554 799998775331   2489999999999999999999999999999999999999999999987 4566


Q ss_pred             eEEE
Q psy6405         209 QDIK  212 (548)
Q Consensus       209 ~LlV  212 (548)
                      .+..
T Consensus        83 ~Ihy   86 (429)
T KOG3651|consen   83 KIHY   86 (429)
T ss_pred             EEEe
Confidence            6654

>PRK11186 carboxy-terminal protease; Provisional

Probab=97.37  E-value=0.00038  Score=79.56  Aligned_cols=70  Identities=23%  Similarity=0.306  Sum_probs=58.2

Q ss_pred             ceeEEEecCCCCCCCCCCeEEEEeccCChhhhc-CCCCCCCEEEEECC-----EEcCCCCHHHHHHHHHHcCCCceeEEE
Q psy6405         139 GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKN-GQLKAGDEILTINN-----VPVTEMSRIEAWSLLKKLNDGTIQDIK  212 (548)
Q Consensus       139 gLGfSItgg~~s~lG~~gI~VssV~pgSpAeka-GrLq~GDrILaVNG-----vsV~~~t~~EavelLrs~~g~~V~LlV  212 (548)
                      ++|+.+.....      .++|.+|.++|||+++ | |++||+|++||+     +++.+++..+++++|++..+.+|.+.+
T Consensus       245 GIGa~l~~~~~------~~~V~~vipGsPA~ka~g-Lk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV  317 (667)
T PRK11186        245 GIGAVLQMDDD------YTVINSLVAGGPAAKSKK-LSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEI  317 (667)
T ss_pred             EEEEEEEEeCC------eEEEEEccCCChHHHhCC-CCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEE
Confidence            45666654322      3889999999999998 6 999999999994     466789999999999999899999999


Q ss_pred             Eec
Q psy6405         213 ALG  215 (548)
Q Consensus       213 ~Ri  215 (548)
                      .|.
T Consensus       318 ~r~  320 (667)
T PRK11186        318 LPA  320 (667)
T ss_pred             EeC
Confidence            873

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=97.34  E-value=0.003  Score=59.08  Aligned_cols=99  Identities=17%  Similarity=0.187  Sum_probs=61.5

Q ss_pred             CCCeEEEEEeeCC---CCCceEEEEEeCCC--CCCCCeEEEEEcCCChhhhcCCCCC-CCEEEEECCeeccCccHHHHHH
Q psy6405          48 TSEVSVVVLHRDL---PGNSVGITLAGGSD--YESKEITVHKVISGTPADRDGRLQK-GDRILSINGKSMKGLTHKESLA  121 (548)
Q Consensus        48 ~~d~~tV~L~Kd~---~~~GLGfsIagG~d--~~~~gVvVs~V~pGSPAaqAGrLq~-GDrILaINGv~V~~~s~~~aV~  121 (548)
                      ....|.|.+....   ..+.+|+++....-  .......|..|.|+|||++|| |++ .|.|+.+++..+.+.+......
T Consensus         8 ~~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~~~l~~~v   86 (138)
T PF04495_consen    8 GQTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDEDDLFELV   86 (138)
T ss_dssp             TSSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--STCHHHHHH
T ss_pred             CCeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCHHHHHHHH
Confidence            3556777776532   24678888875332  234678999999999999999 998 6999999999888777666555


Q ss_pred             HhhCCCCeEEEEEecC--cceeEEEecC
Q psy6405         122 ILKRGPPVEITLIKDG--AGLGFSLEGG  147 (548)
Q Consensus       122 ~lk~g~~VtVtV~RdG--kgLGfSItgg  147 (548)
                      ....+.++.+.|....  ....++|.+.
T Consensus        87 ~~~~~~~l~L~Vyns~~~~vR~V~i~P~  114 (138)
T PF04495_consen   87 EANENKPLQLYVYNSKTDSVREVTITPS  114 (138)
T ss_dssp             HHTTTS-EEEEEEETTTTCEEEEEE---
T ss_pred             HHcCCCcEEEEEEECCCCeEEEEEEEcC
Confidence            5566778888887533  2345566543

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>KOG3129|consensus

Probab=97.34  E-value=0.00054  Score=67.96  Aligned_cols=69  Identities=28%  Similarity=0.400  Sum_probs=56.9

Q ss_pred             CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH---HHHHhhCCCCeEEEEEecCcceeEEEecCC
Q psy6405          79 EITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE---SLAILKRGPPVEITLIKDGAGLGFSLEGGK  148 (548)
Q Consensus        79 gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~---aV~~lk~g~~VtVtV~RdGkgLGfSItgg~  148 (548)
                      -++|.+|.|+|||+.+| |++||.|+++..+.--++....   ++.....+..+.|+|.|.+....+++++.+
T Consensus       140 Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~ltP~~  211 (231)
T KOG3129|consen  140 FAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLSLTPKK  211 (231)
T ss_pred             eEEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEEEEeCccc
Confidence            57899999999999999 9999999999887766655433   233444678899999999999999998765

>KOG3606|consensus

Probab=97.29  E-value=0.00063  Score=69.74  Aligned_cols=83  Identities=22%  Similarity=0.363  Sum_probs=66.0

Q ss_pred             EEEEEeeCCCCCceEEEEEeCCCC--------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh
Q psy6405          52 SVVVLHRDLPGNSVGITLAGGSDY--------ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL  123 (548)
Q Consensus        52 ~tV~L~Kd~~~~GLGfsIagG~d~--------~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l  123 (548)
                      +.|.|.|-+...+|||-|.-|...        .-+++||+..+|||.|+..|.|-+.|+|++|||+.|.+.+..++...+
T Consensus       160 RRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMM  239 (358)
T KOG3606|consen  160 RRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMM  239 (358)
T ss_pred             hheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHH
Confidence            567777776778999998866432        136899999999999999999999999999999999999988876444


Q ss_pred             h-CCCCeEEEEE
Q psy6405         124 K-RGPPVEITLI  134 (548)
Q Consensus       124 k-~g~~VtVtV~  134 (548)
                      . ....+.|||.
T Consensus       240 vANshNLIiTVk  251 (358)
T KOG3606|consen  240 VANSHNLIITVK  251 (358)
T ss_pred             hhcccceEEEec
Confidence            3 3445666665

>KOG3542|consensus

Probab=97.24  E-value=0.00054  Score=77.00  Aligned_cols=84  Identities=29%  Similarity=0.522  Sum_probs=73.2

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPP  128 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~  128 (548)
                      ..++.|.++|......+-|.+.||.+. +.+++|..|.||+-|+++| |+-||+|++|||+..++.+...+...++....
T Consensus       534 AK~RqviLtk~sre~pl~f~L~GGsEk-GfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnnth  611 (1283)
T KOG3542|consen  534 AKPRQVILTKASREDPLMFRLVGGSEK-GFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNNTH  611 (1283)
T ss_pred             ccceeEEEecccccCCceeEeccCccc-cceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCCce
Confidence            567899999866678999999999864 4689999999999999999 99999999999999999998888877777666


Q ss_pred             eEEEEE
Q psy6405         129 VEITLI  134 (548)
Q Consensus       129 VtVtV~  134 (548)
                      ++++|.
T Consensus       612 LtltvK  617 (1283)
T KOG3542|consen  612 LTLTVK  617 (1283)
T ss_pred             EEEEEe
Confidence            777764

>KOG0609|consensus

Probab=97.05  E-value=0.0031  Score=69.81  Aligned_cols=81  Identities=28%  Similarity=0.519  Sum_probs=64.4

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCC
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPP  128 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~  128 (548)
                      .++.|.+.|. .+..+|+++.-..+   ..++|..|..||.+++.|.|++||+|++|||+.+.+.+..+....++ ....
T Consensus       122 ~vriv~i~k~-~~eplG~Tik~~e~---~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~  197 (542)
T KOG0609|consen  122 AVRIVRIVKN-TGEPLGATIRVEED---TKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGS  197 (542)
T ss_pred             eeEEEEEeec-CCCccceEEEeccC---CccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCc
Confidence            3678888888 48999999995432   37999999999999999999999999999999999988777654443 2244


Q ss_pred             eEEEEE
Q psy6405         129 VEITLI  134 (548)
Q Consensus       129 VtVtV~  134 (548)
                      +++.|.
T Consensus       198 itfkii  203 (542)
T KOG0609|consen  198 ITFKII  203 (542)
T ss_pred             EEEEEc
Confidence            555554

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=97.02  E-value=0.0026  Score=65.83  Aligned_cols=62  Identities=19%  Similarity=0.320  Sum_probs=51.4

Q ss_pred             EEEcCCC---hhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeEEEe
Q psy6405          83 HKVISGT---PADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGFSLE  145 (548)
Q Consensus        83 s~V~pGS---PAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGfSIt  145 (548)
                      -.+.||.   ...++| |++||.+++|||.++.+..... ++..++....++|+|.|+|....+.+.
T Consensus       209 Yrl~Pgkd~~lF~~~G-Lq~GDva~sING~dL~D~~qa~~l~~~L~~~tei~ltVeRdGq~~~i~i~  274 (276)
T PRK09681        209 YAVKPGADRSLFDASG-FKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDISIA  274 (276)
T ss_pred             EEECCCCcHHHHHHcC-CCCCCEEEEeCCeeCCCHHHHHHHHHHhccCCeEEEEEEECCEEEEEEEE
Confidence            4566653   467899 9999999999999999887655 667788899999999999998877764

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.002  Score=67.54  Aligned_cols=70  Identities=27%  Similarity=0.489  Sum_probs=60.0

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeEEEecCC
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGFSLEGGK  148 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGfSItgg~  148 (548)
                      .+++|..|.++|||+++| ++.||.|+++||.++.+..... .+.....+..+.+++.|+++...+.++...
T Consensus       270 ~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~g~~~~~~v~l~~  340 (347)
T COG0265         270 AGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRGGKERELAVTLGD  340 (347)
T ss_pred             CceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEECCEEEEEEEEecC
Confidence            468999999999999999 9999999999999999887666 445555788999999999888888777554

>KOG4371|consensus

Probab=96.98  E-value=0.0027  Score=74.40  Aligned_cols=154  Identities=24%  Similarity=0.413  Sum_probs=109.1

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGP  127 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~  127 (548)
                      .++..+++.|.  -+.||+.++.    ..+.+.|+...-.+.-..-. |++||.++.+||+.+...-+..++..++ .++
T Consensus      1146 p~~i~~~~~r~--~~~l~~~~a~----~~~~~~~~~~~~~~~~~~pd-~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~ 1218 (1332)
T KOG4371|consen 1146 PRVIDVELDRN--EGSLGVQIAS----LSGRVCIKQLTSEPAISHPD-IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGD 1218 (1332)
T ss_pred             CccccccCCCC--CCCCCceecc----CccceehhhcccCCCCCCCC-cchhhhhhhccceeeechhhHHHHHHHhccCc
Confidence            34455666666  3889999883    23567777766655555566 9999999999999998888877765555 355


Q ss_pred             CeEEEEEecCc----------------------------ceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCE
Q psy6405         128 PVEITLIKDGA----------------------------GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDE  179 (548)
Q Consensus       128 ~VtVtV~RdGk----------------------------gLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDr  179 (548)
                      .+.|-|.|...                            ++|+++....  +  ..++++..+...+.|...|.+++||+
T Consensus      1219 ~~~~~~~r~~~~~~d~~~~s~~~~~~~l~~~~~~~~p~~~~~~~~~~~~--~--s~~~~~~~~~~~~~a~~~~~~r~g~~ 1294 (1332)
T KOG4371|consen 1219 RVVLGVQRPPPAYSDQHHASSTSASAPLISVMLLKKPMATLGLSLAKRT--M--SDGIFIRNIAQDSAASSEGTLRVGDR 1294 (1332)
T ss_pred             eEEEEeecCCcccccchhhhhhcccchhhhheeeecccccccccccccC--c--CCceeeecccccccccccccccccce
Confidence            67777877532                            1111111111  1  13788998888888988899999999


Q ss_pred             EEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEe
Q psy6405         180 ILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKAL  214 (548)
Q Consensus       180 ILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~R  214 (548)
                      +...+|.++.+++..+..+.++-. .+++.+++.|
T Consensus      1295 ~~~~~~~~~~~~~p~~~l~~~~~v-~~p~~~~~~~ 1328 (1332)
T KOG4371|consen 1295 LVSLDGEPVDGFTPATILEKLKLV-QGPVQITVTR 1328 (1332)
T ss_pred             eeccCCccCCCCChHHHHHHhhhc-cCchhheehh
Confidence            999999999999976666666533 4566777655

>KOG1421|consensus

Probab=96.96  E-value=0.0059  Score=69.19  Aligned_cols=122  Identities=19%  Similarity=0.255  Sum_probs=90.4

Q ss_pred             CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEEecCCCCC-------
Q psy6405          79 EITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSP-------  151 (548)
Q Consensus        79 gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg~~s~-------  151 (548)
                      -.+|+.|.+..+-   - |..||.|++|||+.+..+++..-+.      .+...|.|+|....++|..-....       
T Consensus       772 l~~ishv~~~~~k---i-l~~gdiilsvngk~itr~~dl~d~~------eid~~ilrdg~~~~ikipt~p~~et~r~vi~  841 (955)
T KOG1421|consen  772 LYVISHVRPLLHK---I-LGVGDIILSVNGKMITRLSDLHDFE------EIDAVILRDGIEMEIKIPTYPEYETSRAVIW  841 (955)
T ss_pred             EEEEEeeccCccc---c-cccccEEEEecCeEEeeehhhhhhh------hhheeeeecCcEEEEEeccccccccceEEEE
Confidence            4577888886653   2 7799999999999999888776332      456677788877777664321110       


Q ss_pred             ----C-------------CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEe
Q psy6405         152 ----F-------------GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKAL  214 (548)
Q Consensus       152 ----l-------------G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~R  214 (548)
                          +             -..+++|.+.-.+|||-+ + |..-..|.+|||+.+.++.  ++..+++..+.....-+...
T Consensus       842 ~gailq~ph~av~~q~edlp~gvyvt~rg~gspalq-~-l~aa~fitavng~~t~~ld--df~~~~~~ipdnsyv~v~~m  917 (955)
T KOG1421|consen  842 MGAILQPPHSAVFEQVEDLPEGVYVTSRGYGSPALQ-M-LRAAHFITAVNGHDTNTLD--DFYHMLLEIPDNSYVQVKQM  917 (955)
T ss_pred             EeccccCchHHHHHHHhccCCceEEeecccCChhHh-h-cchheeEEEecccccCcHH--HHHHHHhhCCCCceEEEEEe
Confidence                0             014899999999999999 6 9999999999999988765  99999998876654444433

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=96.96  E-value=0.0038  Score=54.28  Aligned_cols=70  Identities=23%  Similarity=0.376  Sum_probs=46.7

Q ss_pred             ceEEEEEeCCCCCCCCeEEEEEcCC--------ChhhhcCCCC--CCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEE
Q psy6405          64 SVGITLAGGSDYESKEITVHKVISG--------TPADRDGRLQ--KGDRILSINGKSMKGLTHKESLAILKRGPPVEITL  133 (548)
Q Consensus        64 GLGfsIagG~d~~~~gVvVs~V~pG--------SPAaqAGrLq--~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV  133 (548)
                      .||..++..    +++..|..|.++        ||-.+.| +.  +||.|++|||+++..-........-+.+..+.|+|
T Consensus         2 ~LGAd~~~~----~~~y~I~~I~~gd~~~~~~~sPL~~pG-v~v~~GD~I~aInG~~v~~~~~~~~lL~~~agk~V~Ltv   76 (88)
T PF14685_consen    2 LLGADFSYD----NGGYRIARIYPGDPWNPNARSPLAQPG-VDVREGDYILAINGQPVTADANPYRLLEGKAGKQVLLTV   76 (88)
T ss_dssp             B-SEEEEEE----TTEEEEEEE-BS-TTSSS-B-GGGGGS-----TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEE
T ss_pred             ccceEEEEc----CCEEEEEEEeCCCCCCccccCCccCCC-CCCCCCCEEEEECCEECCCCCCHHHHhcccCCCEEEEEE
Confidence            466666643    357888888886        6766766 55  99999999999998776666666667788899999


Q ss_pred             EecCc
Q psy6405         134 IKDGA  138 (548)
Q Consensus       134 ~RdGk  138 (548)
                      .+.+.
T Consensus        77 ~~~~~   81 (88)
T PF14685_consen   77 NRKPG   81 (88)
T ss_dssp             E-STT
T ss_pred             ecCCC
Confidence            98654

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=96.95  E-value=0.0016  Score=66.57  Aligned_cols=61  Identities=15%  Similarity=0.164  Sum_probs=52.6

Q ss_pred             CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEecccc
Q psy6405         155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALGYDL  218 (548)
Q Consensus       155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~RilDL  218 (548)
                      .|+.|..+.++++|+++| |+.||+|++|||.++.++.  ++.+++... ++..+++.+.|....
T Consensus       191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~~--~~~~~l~~~~~~~~v~l~V~R~G~~  252 (259)
T TIGR01713       191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDPE--QAFQALQMLREETNLTLTVERDGQR  252 (259)
T ss_pred             eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCHH--HHHHHHHhcCCCCeEEEEEEECCEE
Confidence            368999999999999999 9999999999999999876  777888775 456889999997653

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>KOG3938|consensus

Probab=96.85  E-value=0.0035  Score=64.26  Aligned_cols=112  Identities=19%  Similarity=0.289  Sum_probs=87.1

Q ss_pred             ChhhhcCCCCCCCEEE-EECCeeccCc-------cHHHHHHHhhCCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEE
Q psy6405          89 TPADRDGRLQKGDRIL-SINGKSMKGL-------THKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVK  160 (548)
Q Consensus        89 SPAaqAGrLq~GDrIL-aINGv~V~~~-------s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~Vs  160 (548)
                      +.|+.=+ +.+-|+|. .+|...+.-.       ...+.+.....|....|.|.++...+|++|+..-.     .-.+|+
T Consensus        81 kIAe~F~-Is~~dIlfcTlNshKvDM~~llgGqigleDfiFAHvkGq~kEv~v~KsedalGlTITDNG~-----GyAFIK  154 (334)
T KOG3938|consen   81 KIAEAFD-ISPDDILFCTLNSHKVDMKRLLGGQIGLEDFIFAHVKGQAKEVEVVKSEDALGLTITDNGA-----GYAFIK  154 (334)
T ss_pred             HHHHHhc-CCccceEEEecCCCcccHHHHhcCccChhhhhhhhhcCcceeEEEEecccccceEEeeCCc-----ceeeeE
Confidence            4565555 77778764 4566555311       12233455567889999999999999999986422     237899


Q ss_pred             EeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         161 KIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       161 sV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      .|.++|.-++...+.+||.|-+|||.++.++.|.+|..+|+..+..
T Consensus       155 rIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rg  200 (334)
T KOG3938|consen  155 RIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRG  200 (334)
T ss_pred             eecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccC
Confidence            9999999999888999999999999999999999999999998654

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=96.79  E-value=0.0018  Score=68.62  Aligned_cols=60  Identities=13%  Similarity=0.115  Sum_probs=50.9

Q ss_pred             CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHH-cCCCceeEEEEeccc
Q psy6405         155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK-LNDGTIQDIKALGYD  217 (548)
Q Consensus       155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs-~~g~~V~LlV~RilD  217 (548)
                      .+++|..|.++|||+++| |++||+|++|||.++.++.  ++.+.++. ..+..+.+.+.|...
T Consensus       278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~--dl~~~l~~~~~g~~v~l~v~R~g~  338 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIGAE--ELMDRIAETRPGSKVMVTVLRQGK  338 (351)
T ss_pred             ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCCHH--HHHHHHHhcCCCCEEEEEEEECCE
Confidence            378999999999999999 9999999999999999876  67777765 456778888888654

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10898 serine endoprotease; Provisional

Probab=96.73  E-value=0.0023  Score=67.93  Aligned_cols=60  Identities=22%  Similarity=0.296  Sum_probs=50.2

Q ss_pred             CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHH-cCCCceeEEEEeccc
Q psy6405         155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK-LNDGTIQDIKALGYD  217 (548)
Q Consensus       155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs-~~g~~V~LlV~RilD  217 (548)
                      .++.|..|.++|||+++| |+.||+|++|||.++.++.  ++.+.+.. ..+..+.+.+.|...
T Consensus       279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~--~l~~~l~~~~~g~~v~l~v~R~g~  339 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISAL--ETMDQVAEIRPGSVIPVVVMRDDK  339 (353)
T ss_pred             CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCHH--HHHHHHHhcCCCCEEEEEEEECCE
Confidence            478999999999999999 9999999999999998865  56666655 456778888888654

>KOG3606|consensus

Probab=96.66  E-value=0.008  Score=61.86  Aligned_cols=58  Identities=19%  Similarity=0.294  Sum_probs=51.2

Q ss_pred             CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEE
Q psy6405         155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKA  213 (548)
Q Consensus       155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~  213 (548)
                      .+|+|+.+.+||.|+..|-|.+.|.|++|||+.|.+.+.+++.+|+-+. ...+.++|.
T Consensus       194 pGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvAN-shNLIiTVk  251 (358)
T KOG3606|consen  194 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVAN-SHNLIITVK  251 (358)
T ss_pred             CceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhc-ccceEEEec
Confidence            4899999999999999998899999999999999999999999999876 445555554

>KOG3552|consensus

Probab=96.66  E-value=0.0029  Score=73.43  Aligned_cols=77  Identities=29%  Similarity=0.561  Sum_probs=62.4

Q ss_pred             CeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCc
Q psy6405         128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGT  207 (548)
Q Consensus       128 ~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~  207 (548)
                      +..|.+.|. ..+||-+..+       .+++|..|.+|||+.  |.|++||+|+.|||.++.....+.|++++|++ ...
T Consensus        56 pr~vq~~r~-~~lGFgfvag-------rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRac-e~s  124 (1298)
T KOG3552|consen   56 PRQVQLQRN-ASLGFGFVAG-------RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRAC-ESS  124 (1298)
T ss_pred             chhhhhhcc-ccccceeecC-------CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHH-hhh
Confidence            455656654 4466666555       269999999999987  66999999999999999999999999999999 557


Q ss_pred             eeEEEEec
Q psy6405         208 IQDIKALG  215 (548)
Q Consensus       208 V~LlV~Ri  215 (548)
                      |.++|.+.
T Consensus       125 v~ltV~qP  132 (1298)
T KOG3552|consen  125 VNLTVCQP  132 (1298)
T ss_pred             cceEEecc
Confidence            78887774

>KOG3542|consensus

Probab=96.58  E-value=0.0028  Score=71.54  Aligned_cols=82  Identities=29%  Similarity=0.446  Sum_probs=68.2

Q ss_pred             CCeEEEEEe--cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         127 PPVEITLIK--DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       127 ~~VtVtV~R--dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      .+..+++.|  ....+.|.+.++.+..+   +|+|..|.+++.|++.| ++.||+|++|||++..+.+...++++|+.. 
T Consensus       535 K~RqviLtk~sre~pl~f~L~GGsEkGf---gifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnn-  609 (1283)
T KOG3542|consen  535 KPRQVILTKASREDPLMFRLVGGSEKGF---GIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNN-  609 (1283)
T ss_pred             cceeEEEecccccCCceeEeccCccccc---eeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCC-
Confidence            345666665  44568899999887765   49999999999999999 999999999999999999999999999875 


Q ss_pred             CCceeEEEEe
Q psy6405         205 DGTIQDIKAL  214 (548)
Q Consensus       205 g~~V~LlV~R  214 (548)
                       ..+.+++.-
T Consensus       610 -thLtltvKt  618 (1283)
T KOG3542|consen  610 -THLTLTVKT  618 (1283)
T ss_pred             -ceEEEEEec
Confidence             556666654

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=96.52  E-value=0.0092  Score=64.74  Aligned_cols=75  Identities=23%  Similarity=0.322  Sum_probs=56.5

Q ss_pred             EEEecCcceeEEEecCCCCCCCCCCeEEEEec--------cCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         132 TLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIF--------TGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       132 tV~RdGkgLGfSItgg~~s~lG~~gI~VssV~--------pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      .|.-.|..+|+.+...        ++.|....        ..|||+++| |++||+|++|||.++.++.  ++.++++..
T Consensus        90 ~v~pgG~~iGI~l~t~--------GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s~~--DL~~iL~~~  158 (402)
T TIGR02860        90 KVIPGGQSIGVKLNTK--------GVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKNMD--DLANLINKA  158 (402)
T ss_pred             EEEECCEEEEEEEecC--------EEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCCHH--HHHHHHHhC
Confidence            3444666777777432        34443321        258999999 9999999999999999877  888999888


Q ss_pred             CCCceeEEEEeccc
Q psy6405         204 NDGTIQDIKALGYD  217 (548)
Q Consensus       204 ~g~~V~LlV~RilD  217 (548)
                      .+..+.+.+.|...
T Consensus       159 ~g~~V~LtV~R~Ge  172 (402)
T TIGR02860       159 GGEKLTLTIERGGK  172 (402)
T ss_pred             CCCeEEEEEEECCE
Confidence            77788898888654

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=96.48  E-value=0.012  Score=55.08  Aligned_cols=74  Identities=18%  Similarity=0.139  Sum_probs=51.6

Q ss_pred             cceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCC-CCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEe
Q psy6405         138 AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKA-GDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKAL  214 (548)
Q Consensus       138 kgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~-GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~R  214 (548)
                      ..+|++|.-.........+..|..|.++|||+++| |++ .|.|+.+++..+.+.+  ++.+.+++..+.++.+.|-.
T Consensus        26 g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~~--~l~~~v~~~~~~~l~L~Vyn  100 (138)
T PF04495_consen   26 GLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDED--DLFELVEANENKPLQLYVYN  100 (138)
T ss_dssp             SSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--STC--HHHHHHHHTTTS-EEEEEEE
T ss_pred             CCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCHH--HHHHHHHHcCCCcEEEEEEE
Confidence            45788885433221122468899999999999999 998 6999999998888766  88899998888888888854

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>KOG3834|consensus

Probab=96.46  E-value=0.017  Score=62.74  Aligned_cols=137  Identities=22%  Similarity=0.219  Sum_probs=83.9

Q ss_pred             CCeEEEEEcCCChhhhcCCCCC-CCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEec-----------------Ccc
Q psy6405          78 KEITVHKVISGTPADRDGRLQK-GDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKD-----------------GAG  139 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~-GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~Rd-----------------Gkg  139 (548)
                      .+..|-.|.++|+|+++| |.+ -|-|++|||..+..-..............++++|.-.                 |+-
T Consensus        15 eg~hvlkVqedSpa~~ag-lepffdFIvSI~g~rL~~dnd~Lk~llk~~sekVkltv~n~kt~~~R~v~I~ps~~wggql   93 (462)
T KOG3834|consen   15 EGYHVLKVQEDSPAHKAG-LEPFFDFIVSINGIRLNKDNDTLKALLKANSEKVKLTVYNSKTQEVRIVEIVPSNNWGGQL   93 (462)
T ss_pred             eeEEEEEeecCChHHhcC-cchhhhhhheeCcccccCchHHHHHHHHhcccceEEEEEecccceeEEEEecccccccccc
Confidence            467788899999999999 555 8999999999987543322111111222366665421                 111


Q ss_pred             eeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCC-CCCEEEEE-CCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccc
Q psy6405         140 LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLK-AGDEILTI-NNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYD  217 (548)
Q Consensus       140 LGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq-~GDrILaV-NGvsV~~~t~~EavelLrs~~g~~V~LlV~RilD  217 (548)
                      +|++|.=-.....-.....|-+|.+.|||+.+| |+ .+|.|+-+ +.+.   -+.++...+|....++.+.+.| ...|
T Consensus        94 lGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAg-l~~~~DYivG~~~~~~---~~~eDl~~lIeshe~kpLklyV-YN~D  168 (462)
T KOG3834|consen   94 LGVSVRFCSFDGAVESVWHVLSVEPNSPAALAG-LRPYTDYIVGIWDAVM---HEEEDLFTLIESHEGKPLKLYV-YNHD  168 (462)
T ss_pred             cceEEEeccCccchhheeeeeecCCCCHHHhcc-cccccceEecchhhhc---cchHHHHHHHHhccCCCcceeE-eecC
Confidence            444442111100001235688899999999999 76 88999777 4432   2345777888887677766655 3334


Q ss_pred             cCC
Q psy6405         218 LNS  220 (548)
Q Consensus       218 Lr~  220 (548)
                      .+.
T Consensus       169 ~d~  171 (462)
T KOG3834|consen  169 TDS  171 (462)
T ss_pred             CCc
Confidence            333

>KOG0609|consensus

Probab=96.44  E-value=0.009  Score=66.23  Aligned_cols=78  Identities=32%  Similarity=0.528  Sum_probs=65.0

Q ss_pred             EEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCce
Q psy6405         130 EITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI  208 (548)
Q Consensus       130 tVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V  208 (548)
                      .|.+.+. +..+|.+++.....     .++|..|..||.+++.|.|.+||.|++|||+++.+.+..++.++++.+. +.+
T Consensus       125 iv~i~k~~~eplG~Tik~~e~~-----~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~-G~i  198 (542)
T KOG0609|consen  125 IVRIVKNTGEPLGATIRVEEDT-----KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSR-GSI  198 (542)
T ss_pred             EEEEeecCCCccceEEEeccCC-----ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCC-CcE
Confidence            3445554 78899999875543     3899999999999999999999999999999999999999999999985 566


Q ss_pred             eEEEE
Q psy6405         209 QDIKA  213 (548)
Q Consensus       209 ~LlV~  213 (548)
                      ++.+.
T Consensus       199 tfkii  203 (542)
T KOG0609|consen  199 TFKII  203 (542)
T ss_pred             EEEEc
Confidence            65553

>KOG3605|consensus

Probab=96.31  E-value=0.0065  Score=68.49  Aligned_cols=84  Identities=25%  Similarity=0.406  Sum_probs=64.7

Q ss_pred             eEEEEEe-cCcceeEEEec-CCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         129 VEITLIK-DGAGLGFSLEG-GKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       129 VtVtV~R-dGkgLGfSItg-g~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      ..|.|.| .|+.+|+.|.- +..+.+  ..++|..+..+|||++.|.|..||+|++|||.++.++........||..+..
T Consensus       647 KEVvv~K~kGEiLGVViVESGWGSmL--PTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQ  724 (829)
T KOG3605|consen  647 KEVVLEKHKGEILGVVIVESGWGSIL--PTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQ  724 (829)
T ss_pred             ceeeeecccCceeeEEEEecCccccc--hHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhccccc
Confidence            4555554 67889988853 333322  2467888999999999999999999999999999999999999999988653


Q ss_pred             -ceeEEEEe
Q psy6405         207 -TIQDIKAL  214 (548)
Q Consensus       207 -~V~LlV~R  214 (548)
                       .|.+.|.+
T Consensus       725 T~VkltiV~  733 (829)
T KOG3605|consen  725 TAVKLNIVS  733 (829)
T ss_pred             ceEEEEEec
Confidence             45555533

>KOG3938|consensus

Probab=96.19  E-value=0.0087  Score=61.45  Aligned_cols=86  Identities=24%  Similarity=0.400  Sum_probs=68.5

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh---hC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL---KR  125 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l---k~  125 (548)
                      +....|.+.|+  ...||++|.-   ...+-.+|..|.++|..++.-.+++||.|-+|||.++.++.|.++...+   +.
T Consensus       125 Gq~kEv~v~Ks--edalGlTITD---NG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~r  199 (334)
T KOG3938|consen  125 GQAKEVEVVKS--EDALGLTITD---NGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPR  199 (334)
T ss_pred             CcceeEEEEec--ccccceEEee---CCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhccc
Confidence            45578888888  5889999982   3345789999999999988777999999999999999999999976544   45


Q ss_pred             CCCeEEEEEecCcc
Q psy6405         126 GPPVEITLIKDGAG  139 (548)
Q Consensus       126 g~~VtVtV~RdGkg  139 (548)
                      +.+.++.+.-+...
T Consensus       200 ge~ftlrLiePk~a  213 (334)
T KOG3938|consen  200 GETFTLRLIEPKSA  213 (334)
T ss_pred             CCeeEEEeeccccc
Confidence            66677776644333

>KOG4407|consensus

Probab=96.12  E-value=0.0061  Score=72.76  Aligned_cols=122  Identities=21%  Similarity=0.304  Sum_probs=90.8

Q ss_pred             EEEEEeeCCCCCceEEEEEeCCCCC------------------------CCCeEEEEEcCCChhhhcCCCCCCCEEEEEC
Q psy6405          52 SVVVLHRDLPGNSVGITLAGGSDYE------------------------SKEITVHKVISGTPADRDGRLQKGDRILSIN  107 (548)
Q Consensus        52 ~tV~L~Kd~~~~GLGfsIagG~d~~------------------------~~gVvVs~V~pGSPAaqAGrLq~GDrILaIN  107 (548)
                      ..+++.|+ +..||||++..-.-++                        ...+++..+..++++..+| +..||.|..|+
T Consensus        47 ~~~V~~rR-~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG-~~s~~~v~~it  124 (1973)
T KOG4407|consen   47 KLIVIRRR-PNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSG-SSSSVGVAGIT  124 (1973)
T ss_pred             ceEEEEec-CCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccC-cccccceeeec
Confidence            34445555 4899999986322111                        0134566777889999999 99999999999


Q ss_pred             CeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEE
Q psy6405         108 GKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP  187 (548)
Q Consensus       108 Gv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvs  187 (548)
                      |..+...+... ...++.                      .+      .++|.+|.+.++|.-+- |+.||+++.||..+
T Consensus       125 G~e~~~~TS~~-~~~vk~----------------------~e------T~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~  174 (1973)
T KOG4407|consen  125 GLEPTSPTSLP-PYQVKA----------------------ME------TIFIKEVQANGPAHYAN-LQTGDRVLMVNNQP  174 (1973)
T ss_pred             ccccCCCcccc-HHHHhh----------------------hh------hhhhhhhccCChhHHHh-hhccceeEEeecCc
Confidence            99887765221 111111                      01      27788899999999998 99999999999999


Q ss_pred             cCCCCHHHHHHHHHHcCC
Q psy6405         188 VTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       188 V~~~t~~EavelLrs~~g  205 (548)
                      +.++...+++.+++..+.
T Consensus       175 ~A~i~~s~~~S~~~qt~~  192 (1973)
T KOG4407|consen  175 IAGIAYSTIVSMIKQTPA  192 (1973)
T ss_pred             ccchhhhhhhhhhccCCC
Confidence            999999999999988744

>KOG1320|consensus

Probab=95.68  E-value=0.028  Score=62.14  Aligned_cols=131  Identities=18%  Similarity=0.295  Sum_probs=84.1

Q ss_pred             CeEEEEEcCCChhhhcCCCCCCCEEEEECCeecc----CccH---HHHHHHhhCCCCeEEEEEecCcceeEEEecCCC--
Q psy6405          79 EITVHKVISGTPADRDGRLQKGDRILSINGKSMK----GLTH---KESLAILKRGPPVEITLIKDGAGLGFSLEGGKD--  149 (548)
Q Consensus        79 gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~----~~s~---~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg~~--  149 (548)
                      ++.|..+.+-+.|...  ++.||.|+.++|+.|-    ..+.   ..-+....+++.+.+.|.|.+ .+..++++...  
T Consensus       288 g~~i~~~~qtd~ai~~--~nsg~~ll~~DG~~IgVn~~~~~ri~~~~~iSf~~p~d~vl~~v~r~~-e~~~~lr~~~~~~  364 (473)
T KOG1320|consen  288 GVLISKINQTDAAINP--GNSGGPLLNLDGEVIGVNTRKVTRIGFSHGISFKIPIDTVLVIVLRLG-EFQISLRPVKPLV  364 (473)
T ss_pred             ceeeeeecccchhhhc--ccCCCcEEEecCcEeeeeeeeeEEeeccccceeccCchHhhhhhhhhh-hhceeeccccCcc
Confidence            4888999998888765  6999999999998873    1110   001112223444444444433 22222211110  


Q ss_pred             ------------------------CC----CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHH
Q psy6405         150 ------------------------SP----FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLK  201 (548)
Q Consensus       150 ------------------------s~----lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLr  201 (548)
                                              ..    ...+.+.|..|.+++++...+ +..||+|.+|||+++.+..  ++.++++
T Consensus       365 p~~~~~g~~s~~i~~g~vf~~~~~~~~~~~~~~q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~~--~l~~~i~  441 (473)
T KOG1320|consen  365 PVHQYIGLPSYYIFAGLVFVPLTKSYIFPSGVVQLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNLK--HLYELIE  441 (473)
T ss_pred             cccccCCceeEEEecceEEeecCCCccccccceeEEEEEEeccCCCccccc-ccCCCEEEEECCEEeechH--HHHHHHH
Confidence                                    00    011357888999999999999 9999999999999999987  6779998


Q ss_pred             HcC-CCceeEEEEec
Q psy6405         202 KLN-DGTIQDIKALG  215 (548)
Q Consensus       202 s~~-g~~V~LlV~Ri  215 (548)
                      .+. +..+.++..+.
T Consensus       442 ~~~~~~~v~vl~~~~  456 (473)
T KOG1320|consen  442 ECSTEDKVAVLDRRS  456 (473)
T ss_pred             hcCcCceEEEEEecC
Confidence            873 23444444443

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=95.18  E-value=0.025  Score=61.90  Aligned_cols=185  Identities=19%  Similarity=0.206  Sum_probs=97.1

Q ss_pred             EEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEE-eccccCCCCCCCcccCCcCCccc-
Q psy6405         159 VKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKA-LGYDLNSLGYPRTQDLNALGYPK-  236 (548)
Q Consensus       159 VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~-RilDLr~~~~p~~~s~~~Ig~Pk-  236 (548)
                      |..|.++|+|+++| |++||+|++|||.++.+|.  ++...+.   +..+.+.+. |........+.. .....+|.-. 
T Consensus         2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~Dw~--D~~~~l~---~e~l~L~V~~rdGe~~~l~Ie~-~~dedlG~~f~   74 (433)
T TIGR03279         2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRDLI--DYQFLCA---DEELELEVLDANGESHQIEIEK-DLDEDLGLEFT   74 (433)
T ss_pred             cCCcCCCCHHHHcC-CCCCCEEEEECCEECCCHH--HHHHHhc---CCcEEEEEEcCCCeEEEEEEec-CCCCCCcEEec
Confidence            56789999999999 9999999999999999887  5544442   345666664 333221111111 1111222111 


Q ss_pred             ccc----------------------CCcceeeeccchhhhHHhhcccccccCCCcccccCCccC--------CCcccCcc
Q psy6405         237 TRD----------------------LNALEYIKTRDLNALEYIKTRDLNALRYPKTQDLNALEY--------PKTQDLNA  286 (548)
Q Consensus       237 ~~~----------------------~n~~~yI~~rdf~~l~~~~~r~i~s~~~~~~~~~~~~~~--------~~~~~~~~  286 (548)
                      ...                      .+..-|++..|  ++        .||=|--|.-||-+-=        =+-.-+|.
T Consensus        75 ~~~~d~~~~C~N~C~FCFidQlP~gmR~sLY~KDDD--yR--------LSFL~GnyiTLTNl~~~d~~RI~~~~lspl~i  144 (433)
T TIGR03279        75 TALFDGLIQCNNRCPFCFIDQQPPGKRESLYLKDDD--YR--------LSFLYGSYLTLTNLPPAEWQRIEQLRLSPLYV  144 (433)
T ss_pred             cccCCcccccCCcCceEeccCCCCCCcCcceeccCc--ch--------hhhhccceeeecCCCHHHHHHHHHcCCCCEEE
Confidence            000                      00111222221  00        1222333333333210        01112333


Q ss_pred             cCCCCcccCc--ccCCCCccchHHHHHHhhhhccccccC--CCCCcccchhhhHHhhhhccCCCccCCcccC---CCCcc
Q psy6405         287 LGHPKTQDLN--ALGHPKTQDLNALIQDLNALGYDLNAL--GHPKTQDLNALGYKILNALEYPKSQDLNALG---YPKTQ  359 (548)
Q Consensus       287 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  359 (548)
                      -=|--..++.  -+|.|...+.-..+..|.+.|.++++-  =-|---|=..|--.|.         ||-++|   ||.-+
T Consensus       145 SVhat~p~lR~~ll~n~~a~~il~~l~~l~~~~I~~h~qiVlcPGiNDg~~L~~Ti~---------dL~~~~~~~~P~v~  215 (433)
T TIGR03279       145 SVHATEPSLRARLLKNPRAGLILEQLKWFQERRLQLHAQVVVCPGINDGKHLERTLR---------DLAQFHDGDWPTVL  215 (433)
T ss_pred             EEecCCHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEEEEEEcCCcCCHHHHHHHHH---------HHHhhcccCCCcee
Confidence            3344444443  478898889989999999999998862  3455555555554442         344443   66666


Q ss_pred             cccccccCCc
Q psy6405         360 DLNVLEYPKT  369 (548)
Q Consensus       360 ~~~~~~~~~~  369 (548)
                      .+-|.-.--|
T Consensus       216 S~avVPVGlT  225 (433)
T TIGR03279       216 SVAVVPVGLT  225 (433)
T ss_pred             EEEEEccccc
Confidence            6666544333

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>KOG3129|consensus

Probab=95.10  E-value=0.043  Score=54.80  Aligned_cols=61  Identities=21%  Similarity=0.229  Sum_probs=48.9

Q ss_pred             eEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCC-HHHHHHHHHHcCCCceeEEEEecccc
Q psy6405         157 LTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMS-RIEAWSLLKKLNDGTIQDIKALGYDL  218 (548)
Q Consensus       157 I~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t-~~EavelLrs~~g~~V~LlV~RilDL  218 (548)
                      .+|.+|.++|||+.+| |+.||.|+.+..+.-.++. ...+....+...+..+.+.+.|....
T Consensus       141 a~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~  202 (231)
T KOG3129|consen  141 AVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQK  202 (231)
T ss_pred             EEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCE
Confidence            6799999999999999 9999999999988766665 44555555666677888888887653

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=94.68  E-value=0.12  Score=54.50  Aligned_cols=55  Identities=25%  Similarity=0.440  Sum_probs=47.9

Q ss_pred             CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEe
Q psy6405          79 EITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIK  135 (548)
Q Consensus        79 gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~R  135 (548)
                      +|++..|..+||+  .|.|+.||.|++|||+++....... .+...+.|+.++|+..|
T Consensus       131 gvyv~~v~~~~~~--~gkl~~gD~i~avdg~~f~s~~e~i~~v~~~k~Gd~VtI~~~r  186 (342)
T COG3480         131 GVYVLSVIDNSPF--KGKLEAGDTIIAVDGEPFTSSDELIDYVSSKKPGDEVTIDYER  186 (342)
T ss_pred             eEEEEEccCCcch--hceeccCCeEEeeCCeecCCHHHHHHHHhccCCCCeEEEEEEe
Confidence            7899999999998  5779999999999999998876665 45667789999999997

>KOG0606|consensus

Probab=94.49  E-value=0.071  Score=63.65  Aligned_cols=79  Identities=33%  Similarity=0.533  Sum_probs=58.5

Q ss_pred             EEEEeeCCCCCceEEEEE------eCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-C
Q psy6405          53 VVVLHRDLPGNSVGITLA------GGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-R  125 (548)
Q Consensus        53 tV~L~Kd~~~~GLGfsIa------gG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~  125 (548)
                      .+.+.+.  ..++||++.      |+.+.-...-.|..|.++|||..+| +++||.|+.|||.+|.+..|.+++..+. .
T Consensus       629 pI~i~~~--~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~  705 (1205)
T KOG0606|consen  629 PITIHFS--GKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKS  705 (1205)
T ss_pred             ceeeecc--ccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhc
Confidence            3666666  678887653      2222112235789999999999999 9999999999999999999999875554 4


Q ss_pred             CCCeEEEEE
Q psy6405         126 GPPVEITLI  134 (548)
Q Consensus       126 g~~VtVtV~  134 (548)
                      +..+.+.+.
T Consensus       706 gn~v~~~tt  714 (1205)
T KOG0606|consen  706 GNKVTLRTT  714 (1205)
T ss_pred             CCeeEEEee
Confidence            555555543

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=94.47  E-value=0.19  Score=51.29  Aligned_cols=59  Identities=24%  Similarity=0.407  Sum_probs=47.3

Q ss_pred             cCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeEEEe
Q psy6405          86 ISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGFSLE  145 (548)
Q Consensus        86 ~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGfSIt  145 (548)
                      .+++..+..| |+.||.-++||+.++++-.... .++.+...+...++|.|+|....+.|.
T Consensus       215 kd~slF~~sg-lq~GDIavaiNnldltdp~~m~~llq~l~~m~s~qlTv~R~G~rhdInV~  274 (275)
T COG3031         215 KDGSLFYKSG-LQRGDIAVAINNLDLTDPEDMFRLLQMLRNMPSLQLTVIRRGKRHDINVR  274 (275)
T ss_pred             CCcchhhhhc-CCCcceEEEecCcccCCHHHHHHHHHhhhcCcceEEEEEecCccceeeec
Confidence            3456778899 9999999999999998776655 345666778899999999987766653

>KOG0606|consensus

Probab=94.08  E-value=0.084  Score=63.04  Aligned_cols=78  Identities=28%  Similarity=0.329  Sum_probs=59.9

Q ss_pred             EEEEEecCcceeEEEecCC-----CCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         130 EITLIKDGAGLGFSLEGGK-----DSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       130 tVtV~RdGkgLGfSItgg~-----~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      .|++.+.++++||++..-+     .. .-..-..|.+|.++|||..+| ++.||.|+.|||..|.+..|.++++++-+. 
T Consensus       629 pI~i~~~~~~yGft~~airVy~Gd~d-~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~-  705 (1205)
T KOG0606|consen  629 PITIHFSGKKYGFTLRAIRVYMGDKD-VYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKS-  705 (1205)
T ss_pred             ceeeeccccccCceeeeEEEecCCcc-cceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhc-
Confidence            3777888888998774321     11 111135688899999999999 999999999999999999999999999865 


Q ss_pred             CCceeE
Q psy6405         205 DGTIQD  210 (548)
Q Consensus       205 g~~V~L  210 (548)
                      +..+.+
T Consensus       706 gn~v~~  711 (1205)
T KOG0606|consen  706 GNKVTL  711 (1205)
T ss_pred             CCeeEE
Confidence            344443

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=93.92  E-value=0.18  Score=43.86  Aligned_cols=58  Identities=24%  Similarity=0.366  Sum_probs=39.9

Q ss_pred             eEEEEeccC--------ChhhhcC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEecc
Q psy6405         157 LTVKKIFTG--------GCAEKNG-QLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGY  216 (548)
Q Consensus       157 I~VssV~pg--------SpAekaG-rLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ril  216 (548)
                      ..|.+|.++        ||-.+.| .++.||.|++|||+++..-.  ....+|....+..|.|++.+..
T Consensus        14 y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~--~~~~lL~~~agk~V~Ltv~~~~   80 (88)
T PF14685_consen   14 YRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADA--NPYRLLEGKAGKQVLLTVNRKP   80 (88)
T ss_dssp             EEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB---HHHHHHTTTTSEEEEEEE-ST
T ss_pred             EEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCC--CHHHHhcccCCCEEEEEEecCC
Confidence            667777665        5666666 14699999999999999876  6778898888889999988754

>KOG1738|consensus

Probab=93.57  E-value=0.11  Score=58.92  Aligned_cols=72  Identities=26%  Similarity=0.491  Sum_probs=59.5

Q ss_pred             CCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCC-eEEEEEe
Q psy6405          61 PGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPP-VEITLIK  135 (548)
Q Consensus        61 ~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~-VtVtV~R  135 (548)
                      +..|+|+-|..--   ++..+|+.+.+++||...+.|..||+|+.||+..|.+|....++..+..... +.++|.+
T Consensus       211 p~eglg~~I~Ssy---dg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkK  283 (638)
T KOG1738|consen  211 PSEGLGLYIDSSY---DGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKK  283 (638)
T ss_pred             cccCCceEEeeec---CCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeec
Confidence            5678999887543   3678999999999999999999999999999999999999988887775444 4455553

>KOG1320|consensus

Probab=93.54  E-value=0.2  Score=55.49  Aligned_cols=67  Identities=22%  Similarity=0.337  Sum_probs=51.4

Q ss_pred             CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHH-HHhhCCCCeEEEEEecCcceeEEEec
Q psy6405          79 EITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL-AILKRGPPVEITLIKDGAGLGFSLEG  146 (548)
Q Consensus        79 gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV-~~lk~g~~VtVtV~RdGkgLGfSItg  146 (548)
                      .++|..|.|++++...+ +.+||+|++|||++|.+..+..-+ .....++.+.+...|..+...+.|..
T Consensus       399 ~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~~~l~~~i~~~~~~~~v~vl~~~~~e~~tl~Il~  466 (473)
T KOG1320|consen  399 LVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNLKHLYELIEECSTEDKVAVLDRRSAEDATLEILP  466 (473)
T ss_pred             EEEEEEeccCCCccccc-ccCCCEEEEECCEEeechHHHHHHHHhcCcCceEEEEEecCccceeEEecc
Confidence            58899999999999999 999999999999999999887643 33333445656555666666666654

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=93.17  E-value=0.27  Score=51.10  Aligned_cols=51  Identities=20%  Similarity=0.214  Sum_probs=40.8

Q ss_pred             ChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC-CCceeEEEEeccccC
Q psy6405         166 GCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN-DGTIQDIKALGYDLN  219 (548)
Q Consensus       166 SpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~-g~~V~LlV~RilDLr  219 (548)
                      ..-.++| |+.||.+.+|||.++....  ++.++++... ..+++++|+|.+...
T Consensus       218 ~lF~~~G-Lq~GDva~sING~dL~D~~--qa~~l~~~L~~~tei~ltVeRdGq~~  269 (276)
T PRK09681        218 SLFDASG-FKEGDIAIALNQQDFTDPR--AMIALMRQLPSMDSIQLTVLRKGARH  269 (276)
T ss_pred             HHHHHcC-CCCCCEEEEeCCeeCCCHH--HHHHHHHHhccCCeEEEEEEECCEEE
Confidence            3457789 9999999999999998765  6667777654 468999999987644

>KOG3532|consensus

Probab=93.11  E-value=0.25  Score=56.55  Aligned_cols=58  Identities=16%  Similarity=0.346  Sum_probs=46.2

Q ss_pred             CCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHH
Q psy6405          61 PGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAI  122 (548)
Q Consensus        61 ~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~  122 (548)
                      +...+|+.+...   .+..|.|-.|.+++||.++. +.+||.+++|||++|........+..
T Consensus       384 ~s~~ig~vf~~~---~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~s~~q~~~~~~  441 (1051)
T KOG3532|consen  384 VSSPIGLVFDKN---TNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIRSERQATRFLQ  441 (1051)
T ss_pred             ccCceeEEEecC---CceEEEEEEecCCChhhHhc-CCCcceEEEecCccchhHHHHHHHHH
Confidence            466788877642   23578899999999999999 99999999999999987765554433

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=92.38  E-value=0.2  Score=52.60  Aligned_cols=61  Identities=25%  Similarity=0.272  Sum_probs=50.0

Q ss_pred             CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEeccccC
Q psy6405         156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALGYDLN  219 (548)
Q Consensus       156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~RilDLr  219 (548)
                      ++.|..|.+++||+++| ++.||.|+++||..+.+..  +....+... .+..+.+.+.|....+
T Consensus       271 G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~~--~l~~~v~~~~~g~~v~~~~~r~g~~~  332 (347)
T COG0265         271 GAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASLS--DLVAAVASNRPGDEVALKLLRGGKER  332 (347)
T ss_pred             ceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCHH--HHHHHHhccCCCCEEEEEEEECCEEE
Confidence            57899999999999999 9999999999999999866  555666554 4678888888875433

>KOG1738|consensus

Probab=91.74  E-value=0.29  Score=55.56  Aligned_cols=77  Identities=26%  Similarity=0.335  Sum_probs=61.2

Q ss_pred             cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEec
Q psy6405         136 DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALG  215 (548)
Q Consensus       136 dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ri  215 (548)
                      ...++|+.|...-+.     ..+|+.+.++|||.....|..||.|+.||+..+.+|++..++..++......+..++.|.
T Consensus       211 p~eglg~~I~Ssydg-----~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKrp  285 (638)
T KOG1738|consen  211 PSEGLGLYIDSSYDG-----PHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKRP  285 (638)
T ss_pred             cccCCceEEeeecCC-----ceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeeccC
Confidence            344566666544333     477889999999999999999999999999999999999999999988766666666665


Q ss_pred             cc
Q psy6405         216 YD  217 (548)
Q Consensus       216 lD  217 (548)
                      ..
T Consensus       286 ~~  287 (638)
T KOG1738|consen  286 VT  287 (638)
T ss_pred             CC
Confidence            43

>KOG3532|consensus

Probab=91.38  E-value=0.52  Score=54.10  Aligned_cols=107  Identities=21%  Similarity=0.268  Sum_probs=67.7

Q ss_pred             CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccccCCCCCCCcccCCcCCc
Q psy6405         155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDLNSLGYPRTQDLNALGY  234 (548)
Q Consensus       155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDLr~~~~p~~~s~~~Ig~  234 (548)
                      +.+.|.+|.++++|.++. +++||++++|||++|....  ++.+.++...+ .+..++.|.++..+....--.       
T Consensus       398 ~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~s~~--q~~~~~~s~~~-~~~~l~~~~~~~~d~~~~~~~-------  466 (1051)
T KOG3532|consen  398 RAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIRSER--QATRFLQSTTG-DLTVLVERSLDDIDEEESKGK-------  466 (1051)
T ss_pred             eEEEEEEecCCChhhHhc-CCCcceEEEecCccchhHH--HHHHHHHhccc-ceEEEEeecccchhhHHhccc-------
Confidence            467899999999999998 9999999999999998655  88899988844 455555555443222111111       


Q ss_pred             cccccCC-cceeeeccchhhhHHhhcccccccCCCccccc
Q psy6405         235 PKTRDLN-ALEYIKTRDLNALEYIKTRDLNALRYPKTQDL  273 (548)
Q Consensus       235 Pk~~~~n-~~~yI~~rdf~~l~~~~~r~i~s~~~~~~~~~  273 (548)
                       ++...+ ...|.+.-+.-+.+-..+.++.-+++.-|-+|
T Consensus       467 -k~~~~~~~~~~~~~~~~~~~~~~~t~~~t~~h~~v~~~l  505 (1051)
T KOG3532|consen  467 -KTNLLNSRIFFFRNFDDVCFQTILTKPLTTFHFSVFYFL  505 (1051)
T ss_pred             -hhhhhccccccccCCchhhhhhhhcCCCCcceEEEEEee
Confidence             111111 22233333334445556677777766655555

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=89.89  E-value=0.39  Score=53.78  Aligned_cols=56  Identities=29%  Similarity=0.318  Sum_probs=41.4

Q ss_pred             CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccccCCC
Q psy6405         156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDLNSL  221 (548)
Q Consensus       156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDLr~~  221 (548)
                      ...|..|.++|||.++| |.+||+|++|||.+-.         ..+-..+..+.+.+-+...++..
T Consensus       463 ~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~s~~---------l~~~~~~d~i~v~~~~~~~L~e~  518 (558)
T COG3975         463 HEKITFVFPGGPAYKAG-LSPGDKIVAINGISDQ---------LDRYKVNDKIQVHVFREGRLREF  518 (558)
T ss_pred             eeEEEecCCCChhHhcc-CCCccEEEEEcCcccc---------ccccccccceEEEEccCCceEEe
Confidence            36899999999999999 9999999999999211         11122356677777776666544

>PF12812 PDZ_1: PDZ-like domain

Probab=89.73  E-value=1.8  Score=36.72  Aligned_cols=74  Identities=18%  Similarity=0.229  Sum_probs=54.5

Q ss_pred             CCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCE
Q psy6405         100 GDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDE  179 (548)
Q Consensus       100 GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDr  179 (548)
                      -++.+.+.|-.+..+++..+.+...+-                             +.++.+...++++...| +..|-.
T Consensus         4 p~r~v~~~Ga~f~~Ls~q~aR~~~~~~-----------------------------~gv~v~~~~g~~~~~~~-i~~g~i   53 (78)
T PF12812_consen    4 PSRFVEVCGAVFHDLSYQQARQYGIPV-----------------------------GGVYVAVSGGSLAFAGG-ISKGFI   53 (78)
T ss_pred             CCEEEEEcCeecccCCHHHHHHhCCCC-----------------------------CEEEEEecCCChhhhCC-CCCCeE
Confidence            477888888888888777654332110                             23445567778887777 999999


Q ss_pred             EEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         180 ILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       180 ILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      |.+||++++.+..  ++++.+++.+.
T Consensus        54 I~~Vn~kpt~~Ld--~f~~vvk~ipd   77 (78)
T PF12812_consen   54 ITSVNGKPTPDLD--DFIKVVKKIPD   77 (78)
T ss_pred             EEeECCcCCcCHH--HHHHHHHhCCC
Confidence            9999999999866  88888887753

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=89.27  E-value=1.2  Score=46.85  Aligned_cols=54  Identities=26%  Similarity=0.462  Sum_probs=45.0

Q ss_pred             EEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCC---eEEEEEe
Q psy6405          81 TVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPP---VEITLIK  135 (548)
Q Consensus        81 vVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~---VtVtV~R  135 (548)
                      .+..+...|+|..+| +++||+|+++|+.++..+...........+..   +.+.+.|
T Consensus       132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~  188 (375)
T COG0750         132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVASWDDVRRLLVAAAGDVFNLLTILVIR  188 (375)
T ss_pred             eeeecCCCCHHHHcC-CCCCCEEEeECCEEccCHHHHHHHHHhccCCcccceEEEEEe
Confidence            445799999999999 99999999999999999987776555555555   6777777

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=87.52  E-value=1.5  Score=44.97  Aligned_cols=69  Identities=28%  Similarity=0.383  Sum_probs=49.6

Q ss_pred             EEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC-CceeEE
Q psy6405         133 LIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND-GTIQDI  211 (548)
Q Consensus       133 V~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g-~~V~Ll  211 (548)
                      |.|+++..|+.+.+++               +++.-+..| |+.||..++||+.+++.-  +++..+++.... ..+.++
T Consensus       200 v~r~eki~Gyr~~pgk---------------d~slF~~sg-lq~GDIavaiNnldltdp--~~m~~llq~l~~m~s~qlT  261 (275)
T COG3031         200 VIRNEKIEGYRFEPGK---------------DGSLFYKSG-LQRGDIAVAINNLDLTDP--EDMFRLLQMLRNMPSLQLT  261 (275)
T ss_pred             EeeCCceEEEEecCCC---------------Ccchhhhhc-CCCcceEEEecCcccCCH--HHHHHHHHhhhcCcceEEE
Confidence            3455666666666554               455667778 999999999999988864  477777777643 467888


Q ss_pred             EEeccccC
Q psy6405         212 KALGYDLN  219 (548)
Q Consensus       212 V~RilDLr  219 (548)
                      +.|.+..+
T Consensus       262 v~R~G~rh  269 (275)
T COG3031         262 VIRRGKRH  269 (275)
T ss_pred             EEecCccc
Confidence            88876544

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=85.49  E-value=1.5  Score=46.63  Aligned_cols=56  Identities=16%  Similarity=0.182  Sum_probs=46.9

Q ss_pred             CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEec
Q psy6405         156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALG  215 (548)
Q Consensus       156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~Ri  215 (548)
                      ++++..+..++++..  .|..||.|++|||.++.+..  ++.+.+++. .+.+|++...|.
T Consensus       131 gvyv~~v~~~~~~~g--kl~~gD~i~avdg~~f~s~~--e~i~~v~~~k~Gd~VtI~~~r~  187 (342)
T COG3480         131 GVYVLSVIDNSPFKG--KLEAGDTIIAVDGEPFTSSD--ELIDYVSSKKPGDEVTIDYERH  187 (342)
T ss_pred             eEEEEEccCCcchhc--eeccCCeEEeeCCeecCCHH--HHHHHHhccCCCCeEEEEEEec
Confidence            588999999998864  49999999999999998755  888888765 478899998874

>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised

Probab=80.57  E-value=5.6  Score=39.28  Aligned_cols=85  Identities=20%  Similarity=0.190  Sum_probs=52.1

Q ss_pred             hhccHHHHHHhhhccccccccCCCccCCCC-CCCCeEEEEEeeCCCC------CceEEEEEeCCCCCCCCeEEEEEcCCC
Q psy6405          17 SLISQQELQQLIDESNQSLDEGGCPSLLIP-GTSEVSVVVLHRDLPG------NSVGITLAGGSDYESKEITVHKVISGT   89 (548)
Q Consensus        17 Slis~~yv~~~ieev~~~~~~dgai~gml~-~~~d~~tV~L~Kd~~~------~GLGfsIagG~d~~~~gVvVs~V~pGS   89 (548)
                      ..+....+.+..++...+....--+.|.-- +....+++.+.-.+..      ...|+++..    .++.+.|..|..||
T Consensus        58 ~~~p~~~~~~~~~~~~~g~~lrl~V~G~~~~G~~~~k~v~lpl~~~~~g~eRL~~~GL~l~~----e~~~~~Vd~v~fgS  133 (183)
T PF11874_consen   58 EEVPPSELVQVAEQLPPGSSLRLRVEGPDFEGDPVTKTVLLPLGDGADGEERLEAAGLTLME----EGGKVIVDEVEFGS  133 (183)
T ss_pred             ccCCHHHHHHHHhcCCCCCEEEEEEEccCCCCCceEEEEEEEcCCCCCHHHHHHhCCCEEEe----eCCEEEEEecCCCC
Confidence            444555565566665444333322333222 2223355555433211      236888773    34689999999999


Q ss_pred             hhhhcCCCCCCCEEEEE
Q psy6405          90 PADRDGRLQKGDRILSI  106 (548)
Q Consensus        90 PAaqAGrLq~GDrILaI  106 (548)
                      ||+++| +..+++|++|
T Consensus       134 ~A~~~g-~d~d~~I~~v  149 (183)
T PF11874_consen  134 PAEKAG-IDFDWEITEV  149 (183)
T ss_pred             HHHHcC-CCCCcEEEEE
Confidence            999999 9999999887

This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	548
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		2e-17
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		1e-04
3zrt_A	199	Crystal Structure Of Human Psd-95 Pdz1-2 Length = 1		3e-17
3gsl_A	196	Crystal Structure Of Psd-95 Tandem Pdz Domains 1 An		6e-17
2ka9_A	189	Solution Structure Of Psd-95 Pdz12 Complexed With C		1e-16
2ka9_A	189	Solution Structure Of Psd-95 Pdz12 Complexed With C		6e-09
1i16_A	130	Structure Of Interleukin 16: Implications For Funct		5e-15
1x6d_A	119	Solution Structures Of The Pdz Domain Of Human Inte		3e-14
1x6d_A	119	Solution Structures Of The Pdz Domain Of Human Inte		1e-06
2qt5_A	200	Crystal Structure Of Grip1 Pdz12 In Complex With Th		5e-11
2fne_A	117	The Crystal Structure Of The 13th Pdz Domain Of Mpd		4e-10
3rl8_A	105	Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc L		4e-10
2x7z_A	99	Crystal Structure Of The Sap97 Pdz2 I342w C378a Mut		5e-10
4g69_A	100	Structure Of The Human Discs Large 1 Pdz2 - Adenoma		7e-10
2oqs_A	97	Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV		7e-10
2awx_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		1e-09
2g2l_A	105	Crystal Structure Of The Second Pdz Domain Of Sap97		1e-09
2wl7_A	102	Crystal Structure Of The Psd93 Pdz1 Domain Length =		1e-09
2awu_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		2e-09
2byg_A	117	2nd Pdz Domain Of Discs Large Homologue 2 Length =		2e-09
3jxt_A	104	Crystal Structure Of The Third Pdz Domain Of Sap-10		3e-09
3jxt_A	104	Crystal Structure Of The Third Pdz Domain Of Sap-10		2e-05
2i0l_A	84	X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The		3e-09
1iu0_A	91	The First Pdz Domain Of Psd-95 Length = 91		3e-09
1rgr_A	99	Cyclic Peptides Targeting Pdz Domains Of Psd-95: St		6e-09
1kef_A	93	Pdz1 Of Sap90 Length = 93		6e-09
2jil_A	97	Crystal Structure Of 2nd Pdz Domain Of Glutamate Re		7e-09
2jil_A	97	Crystal Structure Of 2nd Pdz Domain Of Glutamate Re		3e-06
2aww_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		7e-09
3rl7_B	107	Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc L		8e-09
2he2_A	102	Crystal Structure Of The 3rd Pdz Domain Of Human Di		1e-08
2he2_A	102	Crystal Structure Of The 3rd Pdz Domain Of Human Di		4e-05
1um7_A	113	Solution Structure Of The Third Pdz Domain Of Synap		1e-08
1um7_A	113	Solution Structure Of The Third Pdz Domain Of Synap		3e-05
2opg_A	98	The Crystal Structure Of The 10th Pdz Domain Of Mpd		2e-08
2opg_A	98	The Crystal Structure Of The 10th Pdz Domain Of Mpd		6e-05
1zok_A	93	Pdz1 Domain Of Synapse Associated Protein 97 Length		3e-08
4amh_A	106	Influence Of Circular Permutation On The Folding Pa		4e-08
1qlc_A	95	Solution Structure Of The Second Pdz Domain Of Post		5e-08
1d5g_A	96	Solution Structure Of The Pdz2 Domain From Human Ph		6e-08
1wha_A	105	Solution Structure Of The Second Pdz Domain Of Huma		6e-08
2dm8_A	116	Solution Structure Of The Eighth Pdz Domain Of Huma		6e-08
2dm8_A	116	Solution Structure Of The Eighth Pdz Domain Of Huma		3e-06
2fe5_A	94	The Crystal Structure Of The Second Pdz Domain Of H		8e-08
3pdz_A	96	Solution Structure Of The Pdz2 Domain From Human Ph		9e-08
1v6b_A	118	Solution Structure Of The Third Pdz Domain Of Mouse		1e-07
1vj6_A	102	Pdz2 From Ptp-Bl In Complex With The C-Terminal Lig		2e-07
1vj6_A	102	Pdz2 From Ptp-Bl In Complex With The C-Terminal Lig		4e-04
1gm1_A	94	Second Pdz Domain (Pdz2) Of Ptp-Bl Length = 94		2e-07
2dlu_A	111	Solution Structure Of The Second Pdz Domain Of Huma		3e-07
2dlu_A	111	Solution Structure Of The Second Pdz Domain Of Huma		7e-07
3b76_A	118	Crystal Structure Of The Third Pdz Domain Of Human		3e-07
3b76_A	118	Crystal Structure Of The Third Pdz Domain Of Human		1e-06
1tp3_A	119	Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv		1e-06
1tp3_A	119	Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv		2e-04
1p1d_A	196	Structural Insights Into The Inter-Domain Chaperoni		1e-06
1u3b_A	185	Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFF		1e-06
1wfv_A	103	Solution Structure Of The Fifth Pdz Domain Of Human		1e-06
1be9_A	119	The Third Pdz Domain From The Synaptic Protein Psd-		1e-06
1be9_A	119	The Third Pdz Domain From The Synaptic Protein Psd-		2e-04
2djt_A	104	Solution Structures Of The Pdz Domain Of Human Unna		1e-06
2djt_A	104	Solution Structures Of The Pdz Domain Of Human Unna		1e-04
1wi4_A	109	Solution Structure Of The Pdz Domain Of Syntaxin Bi		2e-06
2h2c_A	107	Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Der		2e-06
2koj_A	111	Solution Structure Of Mouse Par-3 Pdz2 (Residues 45		3e-06
2daz_A	124	Solution Structure Of The 7th Pdz Domain Of Inad-Li		4e-06
2h2b_A	107	Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-der		4e-06
2dkr_A	93	Solution Structure Of The Pdz Domain From Human Lin		4e-06
2kom_A	121	Solution Structure Of Humar Par-3b Pdz2 (Residues 4		5e-06
1uju_A	111	Solution Structure Of The Fourth Pdz Domain Of Huma		5e-06
2ogp_A	97	Solution Structure Of The Second Pdz Domain Of Par-		5e-06
1q7x_A	108	Solution Structure Of The Alternatively Spliced Pdz		5e-06
2lob_A	112	Pdz Domain Of Cal (Cystic Fibrosis Transmembrane Re		5e-06
3k82_A	98	Crystal Structure Of The Third Pdz Domain Of Psd-95		5e-06
2i1n_A	102	Crystal Structure Of The 1st Pdz Domain Of Human Dl		6e-06
3axa_A	106	Crystal Structure Of Afadin Pdz Domain In Complex W		6e-06
3i4w_A	104	Crystal Structure Of The Third Pdz Domain Of Psd-95		6e-06
2iwn_A	97	3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz		7e-06
2dc2_A	103	Solution Structure Of Pdz Domain Length = 103		7e-06
2dc2_A	103	Solution Structure Of Pdz Domain Length = 103		3e-04
2ain_A	93	Solution Structure Of The Af-6 Pdz Domain Complexed		7e-06
1t2m_A	101	Solution Structure Of The Pdz Domain Of Af-6 Length		7e-06
4e34_A	87	Crystal Structure Of Cftr Associated Ligand (Cal) P		7e-06
4e34_A	87	Crystal Structure Of Cftr Associated Ligand (Cal) P		3e-04
2h3m_A	97	Crystal Structure Of Zo-1 Pdz1 Length = 97		9e-06
1xz9_A	101	Structure Of Af-6 Pdz Domain Length = 101		9e-06
1ozi_A	99	The Alternatively Spliced Pdz2 Domain Of Ptp-Bl Len		9e-06
2i0i_A	85	X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The		2e-05
2i0i_A	85	X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The		7e-04
2rrm_A	100	Interplay Between Phosphatidyl-Inositol-Phosphates		2e-05
2r4h_B	112	Crystal Structure Of A C1190s Mutant Of The 6th Pdz		2e-05
2r4h_B	112	Crystal Structure Of A C1190s Mutant Of The 6th Pdz		4e-04
2fcf_A	103	The Crystal Structure Of The 7th Pdz Domain Of Mpdz		2e-05
1pdr_A	99	Crystal Structure Of The Third Pdz Domain From The		3e-05
2iwq_A	123	7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz		3e-05
2pdz_A	86	Solution Structure Of The Syntrophin Pdz Domain In		3e-05
1z86_A	87	Solution Structure Of The Pdz Domain Of Alpha-Syntr		3e-05
1uhp_A	107	Solution Structure Of Rsgi Ruh-005, A Pdz Domain In		3e-05
1qav_A	90	Unexpected Modes Of Pdz Domain Scaffolding Revealed		3e-05
2iwo_A	120	12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz		4e-05
2jik_A	101	Crystal Structure Of Pdz Domain Of Synaptojanin-2 B		6e-05
2jik_A	101	Crystal Structure Of Pdz Domain Of Synaptojanin-2 B		7e-04
2jin_A	102	Crystal Structure Of Pdz Domain Of Synaptojanin-2 B		7e-05
2jin_A	102	Crystal Structure Of Pdz Domain Of Synaptojanin-2 B		7e-04
2eno_A	120	Solution Structure Of The Pdz Domain From Human Syn		7e-05
2eno_A	120	Solution Structure Of The Pdz Domain From Human Syn		8e-04
2qg1_A	92	Crystal Structure Of The 11th Pdz Domain Of Mpdz (M		8e-05
2vrf_A	95	Crystal Structure Of The Human Beta-2-Syntrophin Pd		9e-05
2o2t_A	117	The Crystal Structure Of The 1st Pdz Domain Of Mpdz		1e-04
2o2t_A	117	The Crystal Structure Of The 1st Pdz Domain Of Mpdz		2e-04
3hpk_A	125	Oxidized Dimeric Pick1 Pdz In Complex With The Carb		1e-04
1z87_A	263	Solution Structure Of The Split Ph-Pdz Supramodule		1e-04
1wg6_A	127	Solution Structure Of Pdz Domain In Protein Xp_1108		1e-04
2gzv_A	114	The Cystal Structure Of The Pdz Domain Of Human Pic		1e-04
2edp_A	100	Solution Structure Of The Pdz Domain From Human Shr		2e-04
1uez_A	101	Solution Structure Of The First Pdz Domain Of Human		2e-04
1um1_A	110	Solution Structure Of Rsgi Ruh-007, Pdz Domain In H		2e-04
1uew_A	114	Solution Structure Of The Forth Pdz Domain Of Human		2e-04
2pku_A	87	Solution Structure Of Pick1 Pdz In Complex With The		2e-04
1ujd_A	117	Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of		2e-04
3hpm_A	111	Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex W		3e-04
1v62_A	117	Solution Structure Of The 3rd Pdz Domain Of Grip2 L		3e-04
2koh_A	111	Nmr Structure Of Mouse Par3-Pdz3 In Complex With Ve		3e-04
2k1z_A	104	Solution Structure Of Par-3 Pdz3 Length = 104		3e-04
3qe1_A	107	Crystal Structure Of Pdz Domain Of Sorting Nexin 27		7e-04
3qdo_A	109	Crystal Structure Of Pdz Domain Of Sorting Nexin 27		7e-04
3qgl_A	101	Crystal Structure Of Pdz Domain Of Sorting Nexin 27		7e-04
2ehr_A	117	Solution Structure Of The Sixth Pdz Domain Of Human		8e-04

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 97/182 (53%), Gaps = 26/182 (14%)
Query: 47  GTSEVSVVVLHRDLPGNS-VGITLAGGSDY----ESKEITVHKVISGTPADRDGRLQKGD 101
           G  E   + L R   GNS +G ++AGG+D     +   I + K+I G  A +DGRL+  D
Sbjct: 56  GEMEYEEITLER---GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVND 112
Query: 102 RILSINGKSMKGLTHKES------------LAILKRGPP----VEITLIKDGAGLGFSLE 145
            IL +N   ++ +TH  +            L +++R PP    +EI LIK   GLGFS+ 
Sbjct: 113 SILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIA 172
Query: 146 GGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL 203
           GG  +    GD  + V KI  GG A K+G+L+ GD+IL +N+V + ++   +A + LK  
Sbjct: 173 GGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT 232
Query: 204 ND 205
            D
Sbjct: 233 YD 234

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           P  I + +   GLGF++ GG+D     + + +  I  GG A+ +G+L+ GD+IL++N V 
Sbjct: 308 PRRIVIHRGSTGLGFNIVGGEDG----EGIFISFILAGGPADLSGELRKGDQILSVNGVD 363
Query: 188 VTEMSRIEAWSLLK 201
           +   S  +A   LK
Sbjct: 364 LRNASHEQAAIALK 377

>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2 Length = 199

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 98/182 (53%), Gaps = 26/182 (14%)
Query: 47  GTSEVSVVVLHRDLPGNS-VGITLAGGSDY----ESKEITVHKVISGTPADRDGRLQKGD 101
           G+ E   + L R   GNS +G ++AGG+D     +   I + K+I G  A +DGRL+  D
Sbjct: 9   GSMEYEEITLER---GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVND 65
Query: 102 RILSINGKSMKGLTHKES------------LAILKRGPP----VEITLIKDGAGLGFSLE 145
            IL +N   ++ +TH  +            L +++R PP    +EI LIK   GLGFS+ 
Sbjct: 66  SILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIA 125
Query: 146 GGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL 203
           GG  +    GD  + V KI  GG A K+G+L+ GD+IL +N+V + ++   +A + LK  
Sbjct: 126 GGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT 185
Query: 204 ND 205
            D
Sbjct: 186 YD 187

>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2 Length = 196

Iteration: 1
 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 98/182 (53%), Gaps = 26/182 (14%)
Query: 47  GTSEVSVVVLHRDLPGNS-VGITLAGGSDY----ESKEITVHKVISGTPADRDGRLQKGD 101
           G+ E   + L R   GNS +G ++AGG+D     +   I + K+I G  A +DGRL+  D
Sbjct: 2   GSMEYEEITLER---GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVND 58
Query: 102 RILSINGKSMKGLTHKES------------LAILKRGPP----VEITLIKDGAGLGFSLE 145
            IL +N   ++ +TH  +            L +++R PP    +EI LIK   GLGFS+ 
Sbjct: 59  SILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIA 118
Query: 146 GGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL 203
           GG  +    GD  + V KI  GG A K+G+L+ GD+IL +N+V + ++   +A + LK  
Sbjct: 119 GGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT 178
Query: 204 ND 205
            D
Sbjct: 179 YD 180

>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin Peptide Length = 189

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 92/167 (55%), Gaps = 23/167 (13%)
Query: 62  GNS-VGITLAGGSDY----ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH 116
           GNS +G ++AGG+D     +   I + K+I G  A +DGRL+  D IL +N   ++ +TH
Sbjct: 11  GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 70
Query: 117 KES------------LAILKRGPP----VEITLIKDGAGLGFSLEGGKDSPF--GDQPLT 158
             +            L +++R PP    +EI LIK   GLGFS+ GG  +    GD  + 
Sbjct: 71  SAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIY 130
Query: 159 VKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND 205
           V KI  GG A K+G+L+ GD+IL +N+V + ++   +A + LK   D
Sbjct: 131 VTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYD 177

>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin Peptide Length = 189

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSP-FGDQP-LTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           EITL +  +GLGFS+ GG D+P  GD P + + KI  GG A ++G+L+  D IL +N V 
Sbjct: 5   EITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 64
Query: 188 VTEMSRIEAWSLLKK 202
           V E++   A   LK+
Sbjct: 65  VREVTHSAAVEALKE 79

>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function, Nmr, 20 Structures Length = 130

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/78 (47%), Positives = 54/78 (69%)
Query: 131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
           +TL K  AGLGFSLEGGK S  GD+PLT+ +IF G  +E++  ++ GDEIL +    +  
Sbjct: 33  VTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQG 92
Query: 191 MSRIEAWSLLKKLNDGTI 208
           ++R EAW+++K L DG +
Sbjct: 93  LTRFEAWNIIKALPDGPV 110

>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human Interleukin- 16 Length = 119

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 51  VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKS 110
           + V +LH++  G  +G +LAGG+D E+K ITVH+V     A ++G +QKG+ +LSINGKS
Sbjct: 16  IHVTILHKE-EGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKS 74
Query: 111 MKGLTHKESLAILKR 125
           +KG TH ++LAIL++
Sbjct: 75  LKGTTHHDALAILRQ 89

>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human Interleukin- 16 Length = 119

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 119 SLAILKRGPPVEITLI--KDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKA 176
           S A LK+   + +T++  ++GAGLGFSL GG D    ++ +TV ++F  G A + G ++ 
Sbjct: 6   SGATLKQLDGIHVTILHKEEGAGLGFSLAGGAD--LENKVITVHRVFPNGLASQEGTIQK 63
Query: 177 GDEILTINNVPVTEMSRIEAWSLLKKLND 205
           G+E+L+IN   +   +  +A ++L++  +
Sbjct: 64  GNEVLSINGKSLKGTTHHDALAILRQARE 92

>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1 Peptide Length = 200

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 26/184 (14%)
Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
           PG+ + S VV      G ++G+T++GG D + K   V  +  G  A R  +L  GD I +
Sbjct: 2   PGSFKGSTVVELMKKEGTTLGLTVSGGIDKDGKP-RVSNLRQGGIAARSDQLDVGDYIKA 60
Query: 106 INGKSMKGLTHKESLAILKRG------------PPV------------EITLIKDGAGLG 141
           +NG ++    H E +++LK              PPV            E+TL K+G   G
Sbjct: 61  VNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGNTFG 120
Query: 142 FSLEGGK-DSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLL 200
           F + GG  D     +P+ +  +  GG A++ G +K GD +L+++ + +   +  EA S+L
Sbjct: 121 FVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSIL 180
Query: 201 KKLN 204
           K+  
Sbjct: 181 KQCG 184

>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz Length = 117

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
           ITL +   GLGFS+ GG  SP GD P+ VK +F  G A ++G+LK GD+I+ +N   +  
Sbjct: 29  ITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEG 88
Query: 191 MSRIEAWSLLKKLNDGTI 208
           ++  EA ++LK+   GT+
Sbjct: 89  VTHEEAVAILKR-TKGTV 105

>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc Length = 105

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           +EI LIK   GLGFS+ GG  +    GD  + V KI  GG A K+G+L+ GD++L +NNV
Sbjct: 13  MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNV 72
Query: 187 PVTEMSRIEAWSLLKKLND 205
            + E++  EA + LK  +D
Sbjct: 73  CLEEVTHEEAVTALKNTSD 91

>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant Protein Domain Length = 99

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           +EI LIK   GLGFS+ GG  +    GD  + V KI  GG A K+G+L+ GD++L +NNV
Sbjct: 10  MEIKLIKGPKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNV 69
Query: 187 PVTEMSRIEAWSLLKKLND 205
            + E++  EA + LK  +D
Sbjct: 70  ALEEVTHEEAVTALKNTSD 88

>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous Polyposis Coli Cytoskeletal Polarity Complex Length = 100

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           +EI LIK   GLGFS+ GG  +    GD  + V KI  GG A K+G+L+ GD++L +NNV
Sbjct: 11  MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNV 70
Query: 187 PVTEMSRIEAWSLLKKLND 205
            + E++  EA + LK  +D
Sbjct: 71  CLEEVTHEEAVTALKNTSD 89

>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18 Papillomavirus E6 Peptide Length = 97

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           +EI LIK   GLGFS+ GG  +    GD  + V KI  GG A K+G+L+ GD++L +NNV
Sbjct: 1   MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNV 60
Query: 187 PVTEMSRIEAWSLLKKLND 205
            + E++  EA + LK  +D
Sbjct: 61  CLEEVTHEEAVTALKNTSD 79

>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s Length = 105

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           +EI LIK   GLGFS+ GG  +    GD  + V KI  GG A K+G+L+ GD++L +N+V
Sbjct: 5   MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSV 64
Query: 187 PVTEMSRIEAWSLLKKLND 205
            + E++  EA + LK  +D
Sbjct: 65  SLEEVTHEEAVTALKNTSD 83

>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In Complex With A Glur-A C-Terminal Peptide Length = 105

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           +EI LIK   GLGFS+ GG  +    GD  + V KI  GG A K+G+L+ GD++L +N+V
Sbjct: 5   MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSV 64
Query: 187 PVTEMSRIEAWSLLKKLND 205
            + E++  EA + LK  +D
Sbjct: 65  CLEEVTHEEAVTALKNTSD 83

>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain Length = 102

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSP-FGDQP-LTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           EITL +  +GLGFS+ GG D+P  GD P + + KI  GG A ++G+L+  D IL +N V 
Sbjct: 12  EITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVD 71
Query: 188 VTEMSRIEAWSLLKK 202
           V+E+S  +A   LK+
Sbjct: 72  VSEVSHSKAVEALKE 86

>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g Length = 105

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           +EI LIK   GLGFS+ GG  +    GD  + V KI  GG A K+G+L+ GD++L +N+V
Sbjct: 5   MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSV 64
Query: 187 PVTEMSRIEAWSLLKKLND 205
            + E++  EA + LK  +D
Sbjct: 65  GLEEVTHEEAVTALKNTSD 83

>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2 Length = 117

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           VEI L K   GLGFS+ GG  +    GD  + V KI  GG A+K+G+L+ GD +L +NN 
Sbjct: 26  VEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNY 85
Query: 187 PVTEMSRIEAWSLLKKLND 205
            + E++  EA ++LK  ++
Sbjct: 86  SLEEVTHEEAVAILKNTSE 104

>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In Complex With A Fluorogenic Peptide-Based Ligand Length = 104

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
           T E   ++LH+   G  +G  + GG D E   I V  +++G PAD  G L++GDRILS+N
Sbjct: 10  TREPRKIILHKGSTG--LGFNIVGGEDGEG--IFVSFILAGGPADLSGELRRGDRILSVN 65
Query: 108 GKSMKGLTHKESLAILKRG 126
           G +++  TH+++ A LKR 
Sbjct: 66  GVNLRNATHEQAAAALKRA 84

>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In Complex With A Fluorogenic Peptide-Based Ligand Length = 104

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           P +I L K   GLGF++ GG+D     + + V  I  GG A+ +G+L+ GD IL++N V 
Sbjct: 13  PRKIILHKGSTGLGFNIVGGEDG----EGIFVSFILAGGPADLSGELRRGDRILSVNGVN 68
Query: 188 VTEMSRIEAWSLLKK 202
           +   +  +A + LK+
Sbjct: 69  LRNATHEQAAAALKR 83

>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C- Terminal Peptide Of Hpv18 E6. Length = 84

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           EI LIK   GLGFS+ GG  +    GD  + V KI  GG A K+G+L+ GD++L +N+V 
Sbjct: 1   EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVC 60
Query: 188 VTEMSRIEAWSLLKKLND 205
           + E++  EA + LK  +D
Sbjct: 61  LEEVTHEEAVTALKNTSD 78

>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95 Length = 91

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSP-FGDQP-LTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           EITL +  +GLGFS+ GG D+P  GD P + + KI  GG A ++G+L+  D IL +N V 
Sbjct: 5   EITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 64
Query: 188 VTEMSRIEAWSLLKK 202
           V E++   A   LK+
Sbjct: 65  VREVTHSAAVEALKE 79

>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95: Structural Basis For Enhanced Affinity And Enzymatic Stability Length = 99

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSP-FGDQP-LTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           EITL +  +GLGFS+ GG D+P  GD P + + KI  GG A ++G+L+  D IL +N V 
Sbjct: 4   EITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 63
Query: 188 VTEMSRIEAWSLLKK 202
           V E++   A   LK+
Sbjct: 64  VREVTHSAAVEALKE 78

>pdb|1KEF|A Chain A, Pdz1 Of Sap90 Length = 93

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSP-FGDQP-LTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           EITL +  +GLGFS+ GG D+P  GD P + + KI  GG A ++G+L+  D IL +N V 
Sbjct: 4   EITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 63
Query: 188 VTEMSRIEAWSLLKK 202
           V E++   A   LK+
Sbjct: 64  VREVTHSAAVEALKE 78

>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor Interacting Protein-1 (Grip1) Length = 97

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 5/75 (6%)
Query: 54  VVLHRDLPGNSVGITLAGGSD---YESKEITVHKVISGTPADRDGRLQKGDRILSINGKS 110
           V LH++  GN+ G  + GG+     +S+ + +  V  G PADR+G ++ GDR+LS++G  
Sbjct: 7   VTLHKE--GNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIR 64
Query: 111 MKGLTHKESLAILKR 125
           + G TH E+++ILK+
Sbjct: 65  LLGTTHAEAMSILKQ 79

>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor Interacting Protein-1 (Grip1) Length = 97

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 129 VEITLIKDGAGLGFSLEGGK-DSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           VE+TL K+G   GF + GG  D     +P+ +  +  GG A++ G +K GD +L+++ + 
Sbjct: 5   VEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIR 64
Query: 188 VTEMSRIEAWSLLKK 202
           +   +  EA S+LK+
Sbjct: 65  LLGTTHAEAMSILKQ 79

>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g With C-Terminal Glur-A Peptide Length = 105

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           +EI LIK   GLGFS+ GG  +    GD  + V  I  GG A K+G+L+ GD++L +N+V
Sbjct: 5   MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSV 64
Query: 187 PVTEMSRIEAWSLLKKLND 205
            + E++  EA + LK  +D
Sbjct: 65  GLEEVTHEEAVTALKNTSD 83

>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc Length = 107

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           EITL +  +GLGFS+ GG D+P    D  + + KI TGG A ++G+L+  D IL +N V 
Sbjct: 14  EITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVD 73
Query: 188 VTEMSRIEAWSLLKK 202
           V +++  +A   LK+
Sbjct: 74  VRDVTHSKAVEALKE 88

>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs Large Homologue 2, Dlg2 Length = 102

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 54  VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
           VVLH+   G  +G  + GG D E   I V  +++G PAD  G LQ+GD+ILS+NG  ++G
Sbjct: 7   VVLHKGSTG--LGFNIVGGEDGEG--IFVSFILAGGPADLSGELQRGDQILSVNGIDLRG 62
Query: 114 LTHKESLAILKRGPPVEITLI 134
            +H+++ A LK G    +T+I
Sbjct: 63  ASHEQAAAALK-GAGQTVTII 82

>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs Large Homologue 2, Dlg2 Length = 102

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           P ++ L K   GLGF++ GG+D     + + V  I  GG A+ +G+L+ GD+IL++N + 
Sbjct: 4   PRKVVLHKGSTGLGFNIVGGEDG----EGIFVSFILAGGPADLSGELQRGDQILSVNGID 59
Query: 188 VTEMSRIEAWSLLK 201
           +   S  +A + LK
Sbjct: 60  LRGASHEQAAAALK 73

>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse- Associated Protein 102 Length = 113

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 54  VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
           ++LH+   G  +G  + GG D E   I V  +++G PAD  G L++GDRILS+NG +++ 
Sbjct: 19  IILHKGSTG--LGFNIVGGEDGEG--IFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 74
Query: 114 LTHKESLAILKRG 126
            TH+++ A LKR 
Sbjct: 75  ATHEQAAAALKRA 87

>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse- Associated Protein 102 Length = 113

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           P +I L K   GLGF++ GG+D     + + V  I  GG A+ +G+L+ GD IL++N V 
Sbjct: 16  PRKIILHKGSTGLGFNIVGGEDG----EGIFVSFILAGGPADLSGELRRGDRILSVNGVN 71
Query: 188 VTEMSRIEAWSLLKK 202
           +   +  +A + LK+
Sbjct: 72  LRNATHEQAAAALKR 86

>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz Length = 98

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 65  VGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
           +G+++ GGSD     I +H+V     A +DGRL  GD+IL +NG  ++  TH E++ +L+
Sbjct: 17  LGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLR 76
Query: 125 RGPP-VEITLIKDGA 138
           + P  V +TL +D A
Sbjct: 77  QTPQRVRLTLYRDEA 91

>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz Length = 98

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
           G    I + K   GLG S+ GG D+  G   + + +++  G A K+G+L AGD+IL +N 
Sbjct: 3   GCETTIEISKGRTGLGLSIVGGSDTLLG--AIIIHEVYEEGAACKDGRLWAGDQILEVNG 60
Query: 186 VPVTEMSRIEAWSLLKK 202
           + + + +  EA ++L++
Sbjct: 61  IDLRKATHDEAINVLRQ 77

>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97 Length = 93

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           EITL +  +GLGFS+ GG D+P    D  + + KI TGG A ++G+L+  D IL +N   
Sbjct: 4   EITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEAD 63
Query: 188 VTEMSRIEAWSLLKK 202
           V +++  +A   LK+
Sbjct: 64  VRDVTHSKAVEALKE 78

>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway Of A Pdz Domain Length = 106

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 139 GLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEA 196
           GLGFS+ GG  +    GD  + V KI  GG A K+G+L+ GD++L +NNV + E++  EA
Sbjct: 14  GLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEA 73
Query: 197 WSLLKKLND 205
            + LK  +D
Sbjct: 74  VTALKNTSD 82

>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of Postsynaptic Density-95 Length = 95

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           +EI LIK   GLGFS+ GG  +    GD  + V KI  GG A K+G+L+ GD+IL +N+V
Sbjct: 5   MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSV 64
Query: 187 PVTEMSRIEAWSLLKKLND 205
            + ++   +A + LK   D
Sbjct: 65  GLEDVMHEDAVAALKNTYD 83

>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase Hptp1e Complexed With A Peptide Length = 96

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 63  NSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
           NS+GI++ GG +   +   I V  VI    A+ DGR+ KGDR+L++NG S++G THK+++
Sbjct: 16  NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAV 75
Query: 121 AILKRGPPVEITLIKDG 137
             L+    V   L++ G
Sbjct: 76  ETLRNTGQVVHLLLEKG 92

>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Scribble (Kiaa0147 Protein) Length = 105

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 133 LIKDGAGLGFSLEGGKDS-PF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVT 189
           L +   GLGFS+ GGK S P+  GD  + V +I  GG A + G L+ GD +L+IN V VT
Sbjct: 13  LARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVT 72
Query: 190 EMSRIEAWSLL 200
           E     A SLL
Sbjct: 73  EARHDHAVSLL 83

>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad- Like Protein Length = 116

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 40  CPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQK 99
           CP  ++PG   +  +   R    + +G+++ GG D     I +H+V     A RDGRL  
Sbjct: 11  CP--IVPGQEMIIEISKGR----SGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWA 64
Query: 100 GDRILSINGKSMKGLTHKESLAILKRGP-PVEITLIKDGA 138
           GD+IL +NG  ++  +H+E++  L++ P  V + + +D A
Sbjct: 65  GDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEA 104

>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad- Like Protein Length = 116

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
           G  + I + K  +GLG S+ GGKD+P     + + +++  G A ++G+L AGD+IL +N 
Sbjct: 16  GQEMIIEISKGRSGLGLSIVGGKDTPL--NAIVIHEVYEEGAAARDGRLWAGDQILEVNG 73
Query: 186 VPVTEMSRIEAWSLLKK 202
           V +   S  EA + L++
Sbjct: 74  VDLRNSSHEEAITALRQ 90

>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human Dlg3 Length = 94

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           +E+ L+K   GLGFS+ GG  +    GD  + + KI  GG A+K+G+L+ GD +L +NN 
Sbjct: 5   MEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNT 64
Query: 187 PVTEMSRIEAWSLLKKLND 205
            + ++   EA + LK  +D
Sbjct: 65  NLQDVRHEEAVASLKNTSD 83

>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase Hptp1e Length = 96

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 63  NSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
           NS+GI++ GG +   +   I V  VI    A+ DGR+ KGDR+L++NG S++G THK+++
Sbjct: 16  NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAV 75
Query: 121 AILK 124
             L+
Sbjct: 76  ETLR 79

>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse Harmonin Length = 118

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
           G  V +  IK    L  +LEGG DSP G   + V  ++ GG AE++G +  GDEI+ IN 
Sbjct: 16  GKDVRLLRIKKEGSLDLALEGGVDSPVGK--VVVSAVYEGGAAERHGGVVKGDEIMAING 73
Query: 186 VPVTEMSRIEAWSLLKK 202
             VT+ +  EA + L+K
Sbjct: 74  KIVTDYTLAEAEAALQK 90

>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand From The Apc Protein Length = 102

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 64  SVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
           S+GI++ GG +   +   I V  +I    A+ DGR+ KGDR+L++NG S++G THK+++ 
Sbjct: 24  SLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE 83
Query: 122 ILKRGPPVEITLIKDG 137
            L+    V   L++ G
Sbjct: 84  TLRNTGQVVHLLLEKG 99

>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand From The Apc Protein Length = 102

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 123 LKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILT 182
           +K G   E+ L K    LG S+ GG ++      + VK I   G AE +G++  GD +L 
Sbjct: 8   MKPGDTFEVELAKTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLA 67
Query: 183 INNVPVTEMSRIEAWSLLK 201
           +N V +   +  +A   L+
Sbjct: 68  VNGVSLEGATHKQAVETLR 86

>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl Length = 94

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 64  SVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
           S+GI++ GG +   +   I V  +I    A+ DGR+ KGDR+L++NG S++G THK+++ 
Sbjct: 16  SLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE 75
Query: 122 ILKRGPPVEITLIKDG 137
            L+    V   L++ G
Sbjct: 76  TLRNTGQVVHLLLEKG 91

>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad- Like Protein Length = 111

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 62  GNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
           G+ +G  + GG   ++  + V  ++ G  ADRDGRLQ GD IL I G +++G+T ++   
Sbjct: 25  GSGLGFGIVGG---KTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQ 81
Query: 122 ILKR-GPPVEITLIKDGAG 139
           +L+  G  V + + +D AG
Sbjct: 82  VLRNCGNSVRMLVARDPAG 100

>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad- Like Protein Length = 111

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 130 EITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVT 189
           E+ LI DG+GLGF + GGK S      + V+ I  GG A+++G+L+ GD IL I    V 
Sbjct: 18  EVELINDGSGLGFGIVGGKTS-----GVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQ 72
Query: 190 EMSRIEAWSLLK 201
            M+  +   +L+
Sbjct: 73  GMTSEQVAQVLR 84

>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human Ligand-of-numb Protein-x (lnx1) In Complex With The C-terminal Peptide From The Coxsackievirus And Adenovirus Receptor Length = 118

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 51/76 (67%), Gaps = 5/76 (6%)
Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPA---DRDGRLQKGDRILSINGK 109
           VV + +D PG S+G+T+AGG+ +   ++ ++ VIS  P     RDGR++ GD +L+++G 
Sbjct: 27  VVNIQKD-PGESLGMTVAGGASHREWDLPIY-VISVEPGGVISRDGRIKTGDILLNVDGV 84
Query: 110 SMKGLTHKESLAILKR 125
            +  ++  E++A+LKR
Sbjct: 85  ELTEVSRSEAVALLKR 100

>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human Ligand-of-numb Protein-x (lnx1) In Complex With The C-terminal Peptide From The Coxsackievirus And Adenovirus Receptor Length = 118

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 131 ITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVT 189
           + + KD G  LG ++ GG      D P+ V  +  GG   ++G++K GD +L ++ V +T
Sbjct: 28  VNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELT 87
Query: 190 EMSRIEAWSLLKKLNDGTIQDIKAL 214
           E+SR EA +LLK+ +   +  +KAL
Sbjct: 88  EVSRSEAVALLKRTSSSIV--LKAL 110

>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv Peptide Ligand Length = 119

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 54  VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
           +V+HR   G  +G  + GG D E   I +  +++G PAD  G L+KGD+ILS+NG  ++ 
Sbjct: 18  IVIHRGSTG--LGFNIVGGEDGEG--IFISFILAGGPADLSGELRKGDQILSVNGVDLRN 73
Query: 114 LTHKESLAILK 124
            +H+++   LK
Sbjct: 74  ASHEQAAIALK 84

>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv Peptide Ligand Length = 119

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           P  I + +   GLGF++ GG+D     + + +  I  GG A+ +G+L+ GD+IL++N V 
Sbjct: 15  PRRIVIHRGSTGLGFNIVGGEDG----EGIFISFILAGGPADLSGELRKGDQILSVNGVD 70
Query: 188 VTEMSRIEAWSLLK 201
           +   S  +A   LK
Sbjct: 71  LRNASHEQAAIALK 84

>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of Tandem Pdz Domains In Glutamate Receptor Interacting Proteins Length = 196

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 30/184 (16%)
Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVIS----GTPADRDGRLQKGDRIL 104
           +E + VVL  D P    GI L G S + ++ ++   +IS     +PA+R G LQ GDR++
Sbjct: 5   TETTEVVLTAD-PVTGFGIQLQG-SVFATETLSSPPLISYIEADSPAERCGVLQIGDRVM 62
Query: 105 SINGKSMKGLTHKESLAILKRGPPV-EITL----------------------IKDGAGLG 141
           +ING   +  T +E+  +L+      ++TL                       K    LG
Sbjct: 63  AINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELG 122
Query: 142 FSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLK 201
            ++        GD PL +  I  G  A + G L+ GD++L I+N+ +   S  +A  +L+
Sbjct: 123 ITISSPSSRKPGD-PLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQ 181
Query: 202 KLND 205
           +  D
Sbjct: 182 QCED 185

>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD Proteins Revealed By The Closed Conformation Of The Tandem Pdz Domains Length = 185

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 27/121 (22%)
Query: 80  ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-------------RG 126
           + +  ++ G PA++ G+L  GD+I+SING S+ GL      +I+K             R 
Sbjct: 31  VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVRC 90
Query: 127 PPVEITLIKD---GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
           PPV   LI+       LGFS++ G           +  +  GG AE+ G ++ G  I+ I
Sbjct: 91  PPVTTVLIRRPDLRYQLGFSVQNG----------IICSLMRGGIAERGG-VRVGHRIIEI 139
Query: 184 N 184
           N
Sbjct: 140 N 140

>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human Membrane Associated Guanylate Kinase Inverted-2 (Kiaa0705 Protein) Length = 103

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 66  GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR 125
           G ++ GG +Y+  ++ V ++    PA R+GR++ GD+I+ ING+S + +TH  ++ ++K 
Sbjct: 25  GFSIRGGREYK-MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKS 83
Query: 126 GPPVEITLIKDGAGLGFS 143
           G      L+K G G G S
Sbjct: 84  GGRRVRLLLKRGTGSGPS 101

>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In Complex With A C-Terminal Peptide Derived From Cript. Length = 119

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 54  VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
           +V+HR   G  +G  + GG D E   I +  +++G PAD  G L+KGD+ILS+NG  ++ 
Sbjct: 18  IVIHRGSTG--LGFNIIGGEDGEG--IFISFILAGGPADLSGELRKGDQILSVNGVDLRN 73
Query: 114 LTHKESLAILK 124
            +H+++   LK
Sbjct: 74  ASHEQAAIALK 84

>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In Complex With A C-Terminal Peptide Derived From Cript. Length = 119

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           P  I + +   GLGF++ GG+D     + + +  I  GG A+ +G+L+ GD+IL++N V 
Sbjct: 15  PRRIVIHRGSTGLGFNIIGGEDG----EGIFISFILAGGPADLSGELRKGDQILSVNGVD 70
Query: 188 VTEMSRIEAWSLLK 201
           +   S  +A   LK
Sbjct: 71  LRNASHEQAAIALK 84

>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed Protein Product Length = 104

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 66  GITLAGGSDYESKE-ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
           G+TL GG D      + V  ++   PA R GRL+ GD +L ING+S +GLTH +++  ++
Sbjct: 25  GLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIR 84
Query: 125 RGPP 128
            G P
Sbjct: 85  AGGP 88

>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed Protein Product Length = 104

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
           + L++  AG G +L GG+D   GD PL V+ +   G A++ G+L+ GD +L IN      
Sbjct: 15  VELVRGYAGFGLTLGGGRDVA-GDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQG 73
Query: 191 MSRIEA 196
           ++  +A
Sbjct: 74  LTHAQA 79

>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding Protein 4 Length = 109

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 65  VGITLAGGSDY-ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL 123
           +G+ + GG +  E   + +H+VI G    +DGRL+ GD+++SIN +SM G++ +E+ +I+
Sbjct: 27  LGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSII 86
Query: 124 KRG-----PPVEITLIKDGAGLG 141
            R       P EI  I+ G   G
Sbjct: 87  TRAKLRSESPWEIAFIRSGPSSG 109

>pdb|2H2C|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Derived Ligand (Wrrttwv) Length = 107

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
Query: 50  EVSVVVLHRDLPGNSVGITLAGGSD---YESKE--ITVHKVISGTPADRDGRLQKGDRIL 104
           E   V LHR  PG   GI ++GG D   ++S E  I +  V+ G PA+  G+LQ+ DR+ 
Sbjct: 7   EQHTVTLHR-APGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVA 63
Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
            +NG SM  + H  ++  L++ G   +IT+ +   G
Sbjct: 64  MVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGG 99

>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558) Length = 111

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 124 KRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
           K G  + I L K   GLGFS+     +  G  P+ VK I   G A ++G+LKAGD ++ +
Sbjct: 8   KVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 67
Query: 184 NNVPVTEMSRIEAWSLLKKLN-DGTI 208
           N V +   S+ E  SLL+    +GT+
Sbjct: 68  NGVDLAGKSQEEVVSLLRSTKMEGTV 93

>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like Protein Length = 124

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query: 45  IPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRIL 104
           +PG  E+ ++ L +D   N +G++LAG  D     I V  +    PA  DGR++ GD +L
Sbjct: 22  LPG--ELHIIELEKD--KNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELL 77
Query: 105 SINGKSMKGLTHKESLAILKRGPP-VEITLIKD 136
            IN + + G +H+ + AI+K  P  V++  I++
Sbjct: 78  EINNQILYGRSHQNASAIIKTAPSKVKLVFIRN 110

>pdb|2H2B|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-derived Ligand (wrrttyl) Length = 107

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
Query: 50  EVSVVVLHRDLPGNSVGITLAGGSD---YESKE--ITVHKVISGTPADRDGRLQKGDRIL 104
           E   V LHR  PG   GI ++GG D   ++S E  I +  V+ G PA+  G+LQ+ DR+ 
Sbjct: 7   EQHTVTLHR-APGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVA 63
Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
            +NG SM  + H  ++  L++ G   +IT+ +   G
Sbjct: 64  MVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGG 99

>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7 Homolog B Length = 93

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
           + L K   GLGF++ GGK+    + P+ + ++  GG A+++G LK GD++L++N V V  
Sbjct: 9   VELPKTDEGLGFNIMGGKEQ---NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 65
Query: 191 MSRIEAWSLLK 201
               +A  LLK
Sbjct: 66  EQHEKAVELLK 76

>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549) Length = 121

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 124 KRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
           K G  + I L K   GLGFS+     +  G  P+ VK I   G A ++G+LKAGD ++ +
Sbjct: 27  KIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 86
Query: 184 NNVPVTEMSRIEAWSLLKKLN-DGTI 208
           N V +   S+ E  SLL+    +GT+
Sbjct: 87  NGVDLVGKSQEEVVSLLRSTKMEGTV 112

>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human Scribble (Kiaa0147 Protein) Length = 111

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 61  PGNSVGITLAGGS--------DYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
           PG  +GI++ GG+        D   + I + KV     A RDGRL+ G R+L +N +S+ 
Sbjct: 19  PGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLL 78
Query: 113 GLTHKESLAILKRGPPVEITLIKDG 137
           GLTH E++ +L+        L+ DG
Sbjct: 79  GLTHGEAVQLLRSVGDTLTVLVCDG 103

>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3 Length = 97

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
           G  + I L K   GLGFS+     +  G  P+ VK I   G A ++G+LKAGD ++ +N 
Sbjct: 4   GKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNG 63
Query: 186 VPVTEMSRIEAWSLLKKLN-DGTI 208
           V +   S+ E  SLL+    +GT+
Sbjct: 64  VDLAGKSQEEVVSLLRSTKMEGTV 87

>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2 Domain (Pdz2b) Of Ptp-Bas (Hptp1e) Length = 108

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Query: 63  NSVGITLA-----GGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLT 115
           NS+GI++      GG +   +   I V  VI    A+ DGR+ KGDR+L++NG S++G T
Sbjct: 20  NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGAT 79
Query: 116 HKESLAILKRGPPVEITLIKDG 137
           HK+++  L+    V   L++ G
Sbjct: 80  HKQAVETLRNTGQVVHLLLEKG 101

>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane Regulator-Associated Ligand) Length = 112

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
           V++L  D  G  +GI++ GG ++    I + ++  G PADR G L  GD IL++NG +++
Sbjct: 31  VLLLKEDHEG--LGISITGGKEH-GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 87
Query: 113 GLTHKESLAILKR 125
              HKE++ IL +
Sbjct: 88  DTKHKEAVTILSQ 100

>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 98

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 54  VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
           +V+HR   G  +G  + GG   E   I +  +++G PAD  G L+KGD+ILS+NG  ++ 
Sbjct: 10  IVIHRGSTG--LGFNIVGGEXGEG--IFISFILAGGPADLSGELRKGDQILSVNGVDLRN 65
Query: 114 LTHKESLAILK 124
            +H+++   LK
Sbjct: 66  ASHEQAAIALK 76

>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3 Length = 102

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           EI L +  +GLGFS+ GG D+P    D  + + KI  GG A  +G+L   D +L +N V 
Sbjct: 7   EIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVD 66
Query: 188 VTEMSRIEAWSLLKK 202
           V+E+    A   LK+
Sbjct: 67  VSEVVHSRAVEALKE 81

>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The C-Terminal Peptide From Nectin-3 Length = 106

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
           E+  V L +   G  + I  A G+  +   I V  V+ G  AD DGRL  GD++LS++G+
Sbjct: 11  EIITVTLKKQ-NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR 69
Query: 110 SMKGLTHKESLAILKRGPP-VEITLIKDGA 138
           S+ GL+ + +  ++ R    V + + K GA
Sbjct: 70  SLVGLSQERAAELMTRTSSVVTLEVAKQGA 99

>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 104

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 54  VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
           +V+HR   G  +G  + GG   E   I +  +++G PAD  G L+KGD+ILS+NG  ++ 
Sbjct: 15  IVIHRGSTG--LGFNIVGGEXGEG--IFISFILAGGPADLSGELRKGDQILSVNGVDLRN 70
Query: 114 LTHKESLAILK 124
            +H+++   LK
Sbjct: 71  ASHEQAAIALK 81

>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp Target) Length = 97

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 56/93 (60%), Gaps = 6/93 (6%)
Query: 49  SEVSVVVLHRDLPGNSVGITLAG---GSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
           SE   V L +++ G  +GIT+AG       E   I V  +   +  + DGR+Q GD+I++
Sbjct: 3   SETFDVELTKNVQG--LGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIA 60
Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIKDG 137
           ++G +++G T+++++ +L+  G  V +TL++ G
Sbjct: 61  VDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 93

>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain Length = 103

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
           V++L  D  G  +GI++ GG ++    I + ++  G PADR G L  GD IL++NG +++
Sbjct: 13  VLLLKEDHEG--LGISITGGKEH-GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 69
Query: 113 GLTHKESLAILKR 125
              HKE++ IL +
Sbjct: 70  DTKHKEAVTILSQ 82

>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain Length = 103

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 126 GPPVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
           GP  ++ L+K D  GLG S+ GGK+      P+ + +I  G  A++ G L  GD IL +N
Sbjct: 8   GPIRKVLLLKEDHEGLGISITGGKEHGV---PILISEIHPGQPADRCGGLHVGDAILAVN 64
Query: 185 NVPVTEMSRIEAWSLLKK 202
            V + +    EA ++L +
Sbjct: 65  GVNLRDTKHKEAVTILSQ 82

>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With The C-Terminal Peptide From The Bcr Protein Length = 93

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
           E+  V L +   G  + I  A G+  +   I V  V+ G  AD DGRL  GD++LS++G+
Sbjct: 5   EIITVTLKKQ-NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR 63
Query: 110 SMKGLTHKESLAILKRGPP-VEITLIKDGA 138
           S+ GL+ + +  ++ R    V + + K GA
Sbjct: 64  SLVGLSQERAAELMTRTSSVVTLEVAKQGA 93

>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6 Length = 101

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
           E+  V L +   G  + I  A G+  +   I V  V+ G  AD DGRL  GD++LS++G+
Sbjct: 5   EIITVTLKKQ-NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR 63
Query: 110 SMKGLTHKESLAILKRGPP-VEITLIKDGA 138
           S+ GL+ + +  ++ R    V + + K GA
Sbjct: 64  SLVGLSQERAAELMTRTSSVVTLEVAKQGA 93

>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz Domain Bound To Ical36 (Ansrwptsii) Peptide Length = 87

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
           V++L  D  G  +GI++ GG ++    I + ++  G PADR G L  GD IL++NG +++
Sbjct: 6   VLLLKEDHEG--LGISITGGKEH-GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 62
Query: 113 GLTHKESLAILKR 125
              HKE++ IL +
Sbjct: 63  DTKHKEAVTILSQ 75

>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz Domain Bound To Ical36 (Ansrwptsii) Peptide Length = 87

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 126 GPPVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
           GP  ++ L+K D  GLG S+ GGK+      P+ + +I  G  A++ G L  GD IL +N
Sbjct: 1   GPIRKVLLLKEDHEGLGISITGGKEHGV---PILISEIHPGQPADRCGGLHVGDAILAVN 57
Query: 185 NVPVTEMSRIEAWSLLKK 202
            V + +    EA ++L +
Sbjct: 58  GVNLRDTKHKEAVTILSQ 75

>pdb|2H3M|A Chain A, Crystal Structure Of Zo-1 Pdz1 Length = 97

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 9/90 (10%)
Query: 50  EVSVVVLHRDLPGNSVGITLAGGSD---YESKE--ITVHKVISGTPADRDGRLQKGDRIL 104
           E   V LHR  PG   GI ++GG D   ++S E  I +  V+ G PA+  G+LQ+ DR+ 
Sbjct: 7   EQHTVTLHR-APGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVA 63
Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITL 133
            +NG SM  + H  ++  L++ G   +IT+
Sbjct: 64  MVNGVSMDNVEHAFAVQQLRKSGKNAKITI 93

>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain Length = 101

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
           E+  V L +   G  + I  A G+  +   I V  V+ G  AD DGRL  GD++LS++G+
Sbjct: 11  EIITVTLKKQ-NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR 69
Query: 110 SMKGLTHKESLAILKRGPP-VEITLIKDGA 138
           S+ GL+ + +  ++ R    V + + K GA
Sbjct: 70  SLVGLSQERAAELMTRTSSVVTLEVAKQGA 99

>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl Length = 99

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 80  ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDG 137
           I V  +I    A+ DGR+ KGDR+L++NG S++G THK+++  L+    V   L++ G
Sbjct: 39  IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 96

>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C- Terminal Peptide Of Hpv18 E6 Length = 85

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
           T E   VVLHR   G  +G  + GG D E   I +  +++G PAD  G L+KGDRI+S+N
Sbjct: 2   TREPRKVVLHRGSTG--LGFNIVGGEDGEG--IFISFILAGGPADLSGELRKGDRIISVN 57
Query: 108 GKSMK 112
              ++
Sbjct: 58  SVDLR 62

>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C- Terminal Peptide Of Hpv18 E6 Length = 85

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           P ++ L +   GLGF++ GG+D     + + +  I  GG A+ +G+L+ GD I+++N+V
Sbjct: 5   PRKVVLHRGSTGLGFNIVGGEDG----EGIFISFILAGGPADLSGELRKGDRIISVNSV 59

>pdb|2RRM|A Chain A, Interplay Between Phosphatidyl-Inositol-Phosphates And Claudins Upon Binding To The 1st Pdz Domain Of Zonula Occludens 1 Length = 100

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 9/90 (10%)
Query: 50  EVSVVVLHRDLPGNSVGITLAGGSD---YESKE--ITVHKVISGTPADRDGRLQKGDRIL 104
           E   V LHR  PG   GI ++GG D   ++S E  I +  V+ G PA+  G+LQ+ DR+ 
Sbjct: 10  EQHTVTLHR-APGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVA 66
Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITL 133
            +NG SM  + H  ++  L++ G   +IT+
Sbjct: 67  MVNGVSMDNVEHAFAVQQLRKSGKNAKITI 96

>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain Of Human Membrane Associated Guanylate Kinase Length = 112

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 66  GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR 125
           G +L GG +Y + ++ V ++    PA+R G+++ GD IL ING++ K + H  ++ ++K 
Sbjct: 38  GFSLRGGREY-NMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKN 96
Query: 126 G 126
           G
Sbjct: 97  G 97

>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain Of Human Membrane Associated Guanylate Kinase Length = 112

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
           + L +   G GFSL GG++    +  L V ++   G AE++G+++ GDEIL IN      
Sbjct: 28  VELERGAKGFGFSLRGGREY---NMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKN 84
Query: 191 MSRIEAWSLLK 201
           M    A  L+K
Sbjct: 85  MKHSRAIELIK 95

>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz (Mupp-1) Length = 103

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 9/78 (11%)
Query: 61  PGNSVGITLAGGSDYESK--------EITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
           P  S+GI++ GG    S+         I +  V+  +PA ++G L+ GDRI+ ++G  ++
Sbjct: 14  PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLR 73
Query: 113 GLTHKESL-AILKRGPPV 129
             +H++++ AI K G PV
Sbjct: 74  DASHEQAVEAIRKAGNPV 91

>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human Homolog Of Discs Large Protein Length = 99

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
           T E   VVLHR   G  +G  + GG D E   I +  +++G PAD  G L+KGDRI+S+N
Sbjct: 5   TREPRKVVLHRGSTG--LGFNIVGGEDGEG--IFISFILAGGPADLSGELRKGDRIISVN 60
Query: 108 GKSMK 112
              ++
Sbjct: 61  SVDLR 65

>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz Length = 123

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 9/78 (11%)
Query: 61  PGNSVGITLAGGSDYESK--------EITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
           P  S+GI++ GG    S+         I +  V+  +PA ++G L+ GDRI+ ++G  ++
Sbjct: 34  PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLR 93
Query: 113 GLTHKESL-AILKRGPPV 129
             +H++++ AI K G PV
Sbjct: 94  DASHEQAVEAIRKAGNPV 111

>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex With The Peptide Gvkeslv, Nmr, 15 Structures Length = 86

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 136 DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIE 195
           D  GLG S++GG+++     P+ + KIF G  A++   L  GD IL++N   ++  +  E
Sbjct: 10  DAGGLGISIKGGRENKM---PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDE 66
Query: 196 AWSLLKKLNDGTIQDIKAL 214
           A   LKK     + ++K +
Sbjct: 67  AVQALKKTGKEVVLEVKYM 85

>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin Length = 87

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 136 DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIE 195
           D  GLG S++GG+++     P+ + KIF G  A++   L  GD IL++N   ++  +  E
Sbjct: 10  DAGGLGISIKGGRENKM---PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDE 66
Query: 196 AWSLLKKLNDGTIQDIKAL 214
           A   LKK     + ++K +
Sbjct: 67  AVQALKKTGKEVVLEVKYM 85

>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human Cdna, Kiaa1095 Length = 107

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Query: 54  VVLHRDLPGNSVGITLAGGS------DYESKE-ITVHKVISGTPADRDGRLQKGDRILSI 106
           +VLHRD    S+G  + GG       D  S E I V K++   PA ++G LQ  DRI+ +
Sbjct: 12  LVLHRD--SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEV 69
Query: 107 NGKSMKGLTHKESLAILKRGP-PVEITLIKDGAG 139
           NG+ +   TH +++   K    P+ + +++  +G
Sbjct: 70  NGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSG 103

>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By Structure Of Nnos-Syntrophin Complex Length = 90

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 136 DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIE 195
           D  GLG S++GG+++     P+ + KIF G  A++   L  GD IL++N   ++  +  E
Sbjct: 14  DAGGLGISIKGGRENKM---PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDE 70
Query: 196 AWSLLKKLNDGTIQDIKAL 214
           A   LKK     + ++K +
Sbjct: 71  AVQALKKTGKEVVLEVKYM 89

>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp Target) Length = 120

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 140 LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSL 199
           LG S+ GG  SP GD P+ +  +   G A +  +L+ GD I+TI       M+  +A +L
Sbjct: 38  LGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNL 97
Query: 200 LKKLNDGTIQ 209
           LK  + G+I+
Sbjct: 98  LKNAS-GSIE 106

>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding Protein Length = 101

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 65  VGITLAGGSD--YESKE--ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
           +G  + GG+D  Y S +  I V ++     A  DGRLQ+GD+ILS+NG+ +K L H++++
Sbjct: 20  LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAV 79
Query: 121 AILK 124
            + +
Sbjct: 80  DLFR 83

>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding Protein Length = 101

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           EI L +  +GLGF++ GG D  +   D  + V +I   G A  +G+L+ GD+IL++N   
Sbjct: 10  EINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQD 69
Query: 188 VTEMSRIEAWSLLK 201
           +  +   +A  L +
Sbjct: 70  LKNLLHQDAVDLFR 83

>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding Protein Length = 102

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 65  VGITLAGGSD--YESKE--ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
           +G  + GG+D  Y S +  I V ++     A  DGRLQ+GD+ILS+NG+ +K L H++++
Sbjct: 22  LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAV 81
Query: 121 AILK 124
            + +
Sbjct: 82  DLFR 85

>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding Protein Length = 102

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           EI L +  +GLGF++ GG D  +   D  + V +I   G A  +G+L+ GD+IL++N   
Sbjct: 12  EINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQD 71
Query: 188 VTEMSRIEAWSLLK 201
           +  +   +A  L +
Sbjct: 72  LKNLLHQDAVDLFR 85

>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human Synaptojanin 2 Binding Protein Length = 120

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 63  NSVGITLAGGSD--YESKE--ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE 118
           + +G  + GG+D  Y S +  I V ++     A  DGRLQ+GD+ILS+NG+ +K L H++
Sbjct: 28  SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQD 87
Query: 119 SLAILK 124
           ++ + +
Sbjct: 88  AVDLFR 93

>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human Synaptojanin 2 Binding Protein Length = 120

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           EI L +  +GLGF++ GG D  +   D  + V +I   G A  +G+L+ GD+IL++N   
Sbjct: 20  EINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQD 79
Query: 188 VTEMSRIEAWSLLK 201
           +  +   +A  L +
Sbjct: 80  LKNLLHQDAVDLFR 93

>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1) Length = 92

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 61  PGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
           PG  +G+++ G  +     + V  ++ G  AD DGRL +GD+IL +NG+ ++  T +   
Sbjct: 14  PGKGLGLSIVGKRN--DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVA 71
Query: 121 AILK 124
           A+LK
Sbjct: 72  ALLK 75

>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz Domain Length = 95

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 135 KDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRI 194
           ++  GLG S++GG+++     P+ + KIF G  A+++  L+ GD IL++N   + + +  
Sbjct: 12  QEAGGLGISIKGGREN---RMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHD 68
Query: 195 EAWSLLKKLNDGTIQDIK 212
           +A   LK+     + ++K
Sbjct: 69  QAVQALKRAGKEVLLEVK 86

>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz Length = 117

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 61  PGNSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILSINGKSM-KGLTHK 117
           P   +G ++ G       E  I V ++  G+ A RDGRL++ D+IL+ING+++ + +TH+
Sbjct: 30  PSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQ 89
Query: 118 ESLAILKRGPPVEITLIKDGA 138
           ++++IL++       +I  G+
Sbjct: 90  QAISILQKAKDTVQLVIARGS 110

>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz Length = 117

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 12/108 (11%)
Query: 109 KSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCA 168
           K+M    H E   +LK  PP          GLGFS+ G +    G+  + V++I  G  A
Sbjct: 13  KNMAQGRHVEVFELLK--PP--------SGGLGFSVVGLRSENRGELGIFVQEIQEGSVA 62
Query: 169 EKNGQLKAGDEILTINNVPVTE-MSRIEAWSLLKKLNDGTIQDIKALG 215
            ++G+LK  D+IL IN   + + ++  +A S+L+K  D T+Q + A G
Sbjct: 63  HRDGRLKETDQILAINGQALDQTITHQQAISILQKAKD-TVQLVIARG 109

>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl Tail Of Glur2 Length = 125

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 36  DEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDG 95
           D+ G P+  +PG      V L +D   N +GI++ GG+ Y    + + +V   TPA  DG
Sbjct: 12  DKLGIPT--VPGK-----VTLQKDAQ-NLIGISIGGGAQY-CPCLYIVQVFDNTPAALDG 62
Query: 96  RLQKGDRILSINGKSMKGLTHKESLAILKR 125
            +  GD I  +NG+S+KG T  E   +++ 
Sbjct: 63  TVAAGDEITGVNGRSIKGKTKVEVAKMIQE 92

>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of Alpha- Syntrophin Length = 263

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 118 ESLAILKRGPPVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKA 176
           E+L + +R     +T+ K D  GLG S++GG+++     P+ + KIF G  A++   L  
Sbjct: 72  EALLLQRR----RVTVRKADAGGLGISIKGGREN---KMPILISKIFKGLAADQTEALFV 124
Query: 177 GDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIK 212
           GD IL++N   ++  +  EA   LKK     + ++K
Sbjct: 125 GDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVK 160

>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852 Length = 127

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 37  EGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE---ITVHKVISGTPADR 93
           E  C +L +  + ++++ +   D     +G++L G    E+     I +  +I G  A +
Sbjct: 11  EPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFK 70
Query: 94  DGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVE 130
           DGRL+  D+++++NG+++ G ++ E++  L+R   +E
Sbjct: 71  DGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSME 107

>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1 (Casp Target) Length = 114

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 44  LIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRI 103
           ++PG      V L +D   N +GI++ GG+ Y    + + +V   TPA  DG +  GD I
Sbjct: 23  MVPGK-----VTLQKD-AQNLIGISIGGGAQY-CPCLYIVQVFDNTPAALDGTVAAGDEI 75
Query: 104 LSINGKSMKGLTHKESLAILK 124
             +NG+S+KG T  E   +++
Sbjct: 76  TGVNGRSIKGKTKVEVAKMIQ 96

>pdb|2EDP|A Chain A, Solution Structure Of The Pdz Domain From Human Shroom Family Member 4 Length = 100

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 134 IKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSR 193
           ++ GA  GF+L+GG +     +PLTV KI  GG A  + +++ GDE++ IN  P+   SR
Sbjct: 17  LQGGAPWGFTLKGGLEHC---EPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG-SR 72
Query: 194 IEAWSLLK 201
            EA  L+K
Sbjct: 73  QEALILIK 80

>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human Kiaa1526 Protein Length = 101

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
           + EV +V L R      +G ++ GGS++    I V  V  G+ A+++G L+ GD+IL +N
Sbjct: 6   SGEVRLVSLRRAKAHEGLGFSIRGGSEH-GVGIYVSLVEPGSLAEKEG-LRVGDQILRVN 63
Query: 108 GKSMKGLTHKESLAILK 124
            KS+  +TH E++  LK
Sbjct: 64  DKSLARVTHAEAVKALK 80

>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human Cdna Length = 110

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 51  VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKS 110
           V  V L R   G  +G+     +   +  + +  ++ G+PA  DGRL  GDRIL +NG S
Sbjct: 9   VFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSS 68
Query: 111 MKGLTHKESLAILKRG 126
           + GL +  ++ +++ G
Sbjct: 69  LLGLGYLRAVDLIRHG 84

>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein) Length = 114

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 32/43 (74%)
Query: 82  VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
           + ++I G+PADR  +L+ GDRIL++NG+S+  + H + + ++K
Sbjct: 47  IGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIK 89

>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The Carboxyl Tail Peptide Of Glur2 Length = 87

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 54  VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
           V L +D   N +GI++ GG+ Y    + + +V   TPA  DG +  GD I  +NG+S+KG
Sbjct: 6   VTLQKD-AQNLIGISIGGGAQY-CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKG 63
Query: 114 LTHKESLAILK 124
            T  E   +++
Sbjct: 64  KTKVEVAKMIQ 74

>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of Hypothetical Kiaa0559 Protein From Human Cdna Length = 117

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 127 PPVEITLIKD-------GAGLGFSLEGGKDSP--FGDQPLTVKKIFTGGCAEKNGQLKAG 177
           P   I + +D       G GLG  + GGK+ P   G+    + KI  GG AE+ G+L  G
Sbjct: 12  PHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEG 71
Query: 178 DEILTINNVPVTEMSRIEAWSLLKK 202
            ++L  N +P+T  +  E  S++ +
Sbjct: 72  MQVLEWNGIPLTSKTYEEVQSIISQ 96

>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The C Tail Peptide Of Glur2 Length = 111

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 54  VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
           V L +D   N +GI++ GG+ Y    + + +V   TPA  DG +  GD I  +NG+S+KG
Sbjct: 9   VTLQKD-AQNLIGISIGGGAQY-CPGLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKG 66
Query: 114 LTHKESLAILK 124
            T  E   +++
Sbjct: 67  KTKVEVAKMIQ 77

>pdb|1V62|A Chain A, Solution Structure Of The 3rd Pdz Domain Of Grip2 Length = 117

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 61  PGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
           PG+++GI+L   S      IT+ ++   +  DR G L  GD ILSI+G SM+  +  E+ 
Sbjct: 25  PGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEAT 84
Query: 121 AIL 123
            +L
Sbjct: 85  KLL 87

>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With Ve-Cadherin C-Terminus Length = 111

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 65  VGITLAGGSDYESKE---ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
           +G+++ G    E+     I V  +I+G  A +DGRL+  D+++++NG+S+ G  ++E++ 
Sbjct: 23  LGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAME 82
Query: 122 ILKRGPPVE 130
            L+R    E
Sbjct: 83  TLRRSMSTE 91

>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3 Length = 104

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 65  VGITLAGGSDYESKE---ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
           +G+++ G    E+     I V  +I+G  A +DGRL+  D+++++NG+S+ G  ++E++ 
Sbjct: 20  LGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAME 79
Query: 122 ILKRGPPVE 130
            L+R    E
Sbjct: 80  TLRRSMSTE 88

>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27) Fused To The Gly-Gly Linker Followed By C-Terminal (Eseskv) Of Girk3 Length = 109

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 82  VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRG 126
           V  V+ G  ADR G ++KGDRIL +NG +++G THK+ + +++ G
Sbjct: 47  VSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAG 90

>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27) In Complex With The Eseskv Peptide Corresponding To The C-Terminal Tail Of Girk3 Length = 101

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 82  VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRG 126
           V  V+ G  ADR G ++KGDRIL +NG +++G THK+ + +++ G
Sbjct: 47  VSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAG 90

>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad- Like Protein Length = 117

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 61  PGNSVGITLAGGSDY--------ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
           P  S+GI++ GG           E K I + +V+  +PA +   L+ GD+IL ++G  ++
Sbjct: 25  PNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQ 84
Query: 113 GLTHKESL-AILKRGPPV 129
             +H E++ AI   G PV
Sbjct: 85  NASHSEAVEAIKNAGNPV 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	548
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	9e-52
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	2e-48
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	4e-18
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	2e-45
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	2e-19
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	2e-36
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	7e-17
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	1e-29
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	6e-23
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-29
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	5e-15
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	1e-14
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	6e-29
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	2e-22
2fne_A	117	Multiple PDZ domain protein; structural protein, s	5e-28
2fne_A	117	Multiple PDZ domain protein; structural protein, s	2e-23
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	7e-28
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	5e-12
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	5e-09
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	2e-27
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	3e-20
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	2e-26
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	4e-20
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	3e-26
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	5e-21
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	7e-26
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	2e-22
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	2e-25
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	1e-21
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	2e-25
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	9e-19
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	3e-25
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	1e-20
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	4e-25
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-24
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	4e-25
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	1e-20
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	4e-25
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	3e-23
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	6e-25
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	3e-16
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	1e-24
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	2e-17
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	2e-24
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	1e-18
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	2e-24
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	6e-23
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	2e-24
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	5e-23
2opg_A	98	Multiple PDZ domain protein; structural protein, s	6e-24
2opg_A	98	Multiple PDZ domain protein; structural protein, s	1e-22
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	6e-24
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	1e-19
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	1e-23
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	6e-12
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	8e-09
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	1e-23
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	7e-23
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	1e-23
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	2e-19
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	2e-23
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	4e-18
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	3e-23
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	1e-21
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	3e-23
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	2e-16
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	4e-23
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	4e-18
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	6e-23
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	4e-22
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	8e-23
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	3e-18
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	9e-23
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	1e-18
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	9e-23
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	2e-17
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	1e-22
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	1e-20
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	1e-22
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	6e-21
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	1e-22
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	6e-22
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-22
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-19
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	1e-22
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	6e-21
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-22
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	3e-17
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	2e-22
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	6e-17
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	2e-22
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	5e-21
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	2e-22
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	5e-20
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	2e-22
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	4e-19
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	2e-22
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	2e-16
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	2e-22
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	1e-21
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	3e-22
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	1e-20
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	4e-22
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	2e-21
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	5e-22
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	7e-21
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	5e-22
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	8e-22
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	5e-22
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	8e-19
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	6e-22
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	1e-19
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	7e-22
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	9e-19
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	8e-22
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	2e-15
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	8e-22
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	6e-21
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	9e-22
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	2e-18
2awx_A	105	Synapse associated protein 97; membrane protein, s	9e-22
2awx_A	105	Synapse associated protein 97; membrane protein, s	5e-21
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	1e-21
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	3e-21
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	1e-21
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	7e-21
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	1e-21
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	2e-16
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	1e-21
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	5e-21
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	1e-21
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	7e-19
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	2e-21
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	2e-18
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	4e-21
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	3e-20
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	4e-21
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	4e-20
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	5e-21
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	3e-16
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	5e-21
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	7e-19
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	5e-21
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	6e-18
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	6e-21
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	2e-20
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	7e-21
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	3e-20
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	9e-21
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	1e-13
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	1e-20
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	2e-15
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	1e-20
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	1e-19
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	1e-20
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	3e-19
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	3e-20
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	9e-17
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	3e-20
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	3e-18
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	3e-20
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	2e-16
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	3e-20
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	4e-17
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	4e-20
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	1e-19
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	7e-20
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	1e-17
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	9e-20
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	4e-15
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	1e-19
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	1e-13
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	1e-19
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	5e-17
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	1e-19
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	2e-15
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	1e-19
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	1e-16
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	2e-19
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	3e-16
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	2e-19
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	4e-17
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	2e-19
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	2e-14
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	4e-19
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	1e-17
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	4e-19
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	7e-16
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	7e-19
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	7e-16
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	1e-18
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	6e-12
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	1e-18
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	2e-15
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	1e-18
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	1e-15
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	2e-18
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	6e-16
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	2e-18
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	2e-17
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	3e-18
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	7e-14
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	3e-18
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	9e-15
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	3e-18
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	3e-15
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	3e-18
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	2e-14
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	4e-18
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	2e-17
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	5e-18
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	4e-16
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	6e-18
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	5e-16
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	7e-18
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	4e-15
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	9e-18
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	5e-17
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	1e-17
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	4e-15
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	1e-17
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	1e-13
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	1e-17
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	1e-14
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	2e-17
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	2e-14
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	2e-17
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	9e-16
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	3e-17
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	6e-15
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	1e-16
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	3e-13
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	1e-16
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	3e-13
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	1e-16
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	8e-12
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	5e-16
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	3e-14
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	5e-16
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	9e-13
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	1e-15
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	3e-13
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	2e-15
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	1e-14
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	2e-15
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	6e-14
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	2e-15
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	6e-15
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	2e-15
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	2e-12
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	3e-15
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	2e-13
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	3e-15
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	3e-13
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	4e-15
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	2e-10
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	5e-15
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	2e-14
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	6e-15
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	3e-12
2ego_A	96	General receptor for phosphoinositides 1- associat	7e-15
2ego_A	96	General receptor for phosphoinositides 1- associat	3e-11
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	8e-15
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	1e-11
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	1e-14
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	3e-12
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	1e-14
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	4e-14
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	2e-14
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	9e-13
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	2e-14
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	9e-14
2d90_A	102	PDZ domain containing protein 1; structural genomi	2e-14
2d90_A	102	PDZ domain containing protein 1; structural genomi	1e-12
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	3e-14
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	1e-13
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	3e-14
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	4e-14
3khf_A	99	Microtubule-associated serine/threonine-protein ki	4e-14
3khf_A	99	Microtubule-associated serine/threonine-protein ki	2e-12
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	5e-14
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	2e-10
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	7e-14
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	2e-11
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	8e-14
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	2e-11
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	9e-14
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	2e-13
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	1e-13
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	1e-12
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	2e-13
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	4e-12
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	8e-13
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	7e-11
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	1e-12
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	2e-08
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	2e-12
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	9e-10
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	3e-12
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	2e-10
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	3e-12
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	1e-10
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	6e-12
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	1e-09
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	7e-12
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	6e-09
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	8e-12
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	2e-10
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	1e-11
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	1e-09
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	3e-11
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	1e-10
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	5e-11
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	2e-08
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	5e-11
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	2e-08
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	2e-10
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	4e-10
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	6e-09
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	5e-08
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	2e-07
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	6e-07
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	9e-07
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	2e-06
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	5e-06
3k50_A	403	Putative S41 protease; structural genomics, joint	9e-06
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	1e-05
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	1e-05
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	2e-05
2kl1_A	94	YLBL protein; structure genomics, structural genom	3e-05
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	3e-05
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	9e-05
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	1e-04
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	1e-04
4fgm_A	597	Aminopeptidase N family protein; structural genomi	1e-04
1k32_A	1045	Tricorn protease; protein degradation, substrate g	3e-04
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	7e-04
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	7e-04

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score =  174 bits (443), Expect = 9e-52
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 27/185 (14%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
                 +VV L +   G ++G+T++GG D + K   V  +  G  A R  +L  GD I +
Sbjct: 3   GSFKGSTVVELMKK-EGTTLGLTVSGGIDKDGK-PRVSNLRQGGIAARSDQLDVGDYIKA 60

Query: 106 INGKSMKGLTHKESLAILKR------------------------GPPVEITLIKDGAGLG 141
           +NG ++    H E +++LK                            VE+TL K+G   G
Sbjct: 61  VNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGNTFG 120

Query: 142 FSLEGGKD-SPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLL 200
           F + GG        +P+ +  +  GG A++ G +K GD +L+++ + +   +  EA S+L
Sbjct: 121 FVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSIL 180

Query: 201 KKLND 205
           K+   
Sbjct: 181 KQCGQ 185

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score =  165 bits (420), Expect = 2e-48
 Identities = 59/181 (32%), Positives = 92/181 (50%), Gaps = 24/181 (13%)

Query: 47  GTSEVSVVVLHRDLPGNSVGITLAGGSDY----ESKEITVHKVISGTPADRDGRLQKGDR 102
           G+ E   + L R    + +G ++AGG+D     +   I + K+I G  A +DGRL+  D 
Sbjct: 2   GSMEYEEITLERG--NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDS 59

Query: 103 ILSINGKSMKGLTHKESLAILKR-GPPVEIT---------------LIKDGAGLGFSLEG 146
           IL +N   ++ +TH  ++  LK  G  V +                LIK   GLGFS+ G
Sbjct: 60  ILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAG 119

Query: 147 GKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN 204
           G  +    GD  + V KI  GG A K+G+L+ GD+IL +N+V + ++   +A + LK   
Sbjct: 120 GVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTY 179

Query: 205 D 205
           D
Sbjct: 180 D 180

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 81.7 bits (202), Expect = 4e-18
 Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 13/129 (10%)

Query: 15  STSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLP--GNSVGITLAGG 72
               ++     + + E+   +       L +      +  V+   L      +G ++AGG
Sbjct: 67  DVREVTHSAAVEALKEAGSIV------RLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGG 120

Query: 73  SDYESKE----ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GP 127
              +       I V K+I G  A +DGRLQ GD+IL++N   ++ + H++++A LK    
Sbjct: 121 VGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYD 180

Query: 128 PVEITLIKD 136
            V + + K 
Sbjct: 181 VVYLKVAKP 189

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score =  157 bits (399), Expect = 2e-45
 Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 28/183 (15%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSD---YESKEITVHKVISGTPADRDGRLQKGDRILS 105
           +E + VVL  D P    GI L G        S    +  + + +PA+R G LQ GDR+++
Sbjct: 5   TETTEVVLTAD-PVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMA 63

Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLI----------------------KDGAGLGF 142
           ING   +  T +E+  +L+      ++TL                       K    LG 
Sbjct: 64  INGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGI 123

Query: 143 SLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK 202
           ++        GD PL +  I  G  A + G L+ GD++L I+N+ +   S  +A  +L++
Sbjct: 124 TISSPSSRKPGD-PLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQ 182

Query: 203 LND 205
             D
Sbjct: 183 CED 185

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 85.2 bits (211), Expect = 2e-19
 Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 9/129 (6%)

Query: 15  STSLISQQELQQLIDESNQSLD-----EGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITL 69
            T   + +E  QL+ +S+ +       E      +IP +    V +  +      +GIT+
Sbjct: 68  PTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKK--HSVELGITI 125

Query: 70  AGGSDYESKE-ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GP 127
           +  S  +  + + +  +  G+ A R G L+ GD++L+I+   +   + ++++ IL++   
Sbjct: 126 SSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCED 185

Query: 128 PVEITLIKD 136
            V++ + KD
Sbjct: 186 LVKLKIRKD 194

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score =  133 bits (336), Expect = 2e-36
 Identities = 34/186 (18%), Positives = 61/186 (32%), Gaps = 29/186 (15%)

Query: 41  PSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE-ITVHKVISGTPADRDGRLQK 99
           P+      ++  ++ L  +     +G+ + GG +        +  V        D RL+ 
Sbjct: 9   PATAEIKPNKKILIELKVE--KKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKI 66

Query: 100 GDRILSINGKSM--KGLTHKESLAILKRGPPVEITLI------------------KDGAG 139
            D I  ING  +    +T  +   +        +TL                   K G  
Sbjct: 67  FDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKE 126

Query: 140 LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSL 199
           LG SL         +   T+  +  G   E + +L+ GD I   N   +  +     ++L
Sbjct: 127 LGLSLSPN------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYAL 180

Query: 200 LKKLND 205
            K  N 
Sbjct: 181 FKGANG 186

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 78.4 bits (193), Expect = 7e-17
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 54  VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
           V L +   G  +G++L+          T+  +I G   + D +LQ+GD I   NG +++G
Sbjct: 117 VDLMKK-AGKELGLSLSP----NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEG 171

Query: 114 LTHKESLAILKR-GPPVEITLIK 135
           L  +   A+ K     V + + +
Sbjct: 172 LPFQVCYALFKGANGKVSMEVTR 194

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score =  112 bits (281), Expect = 1e-29
 Identities = 37/87 (42%), Positives = 54/87 (62%)

Query: 123 LKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILT 182
                   +TL K  AGLGFSLEGGK S  GD+PLT+ +IF G  +E++  ++ GDEIL 
Sbjct: 25  TAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQ 84

Query: 183 INNVPVTEMSRIEAWSLLKKLNDGTIQ 209
           +    +  ++R EAW+++K L DG + 
Sbjct: 85  LGGTAMQGLTRFEAWNIIKALPDGPVT 111

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 93.3 bits (232), Expect = 6e-23
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 4/96 (4%)

Query: 41  PSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQ 98
            S+     + V  V L +      +G +L GG      +  +T++++  G  +++   +Q
Sbjct: 20  VSVESTAEATVCTVTLEKM--SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQ 77

Query: 99  KGDRILSINGKSMKGLTHKESLAILKRGPPVEITLI 134
            GD IL + G +M+GLT  E+  I+K  P   +T++
Sbjct: 78  PGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIV 113

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score =  121 bits (305), Expect = 2e-29
 Identities = 65/226 (28%), Positives = 103/226 (45%), Gaps = 25/226 (11%)

Query: 2   QREQFGSITSIASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLP 61
            R Q      +  S + +  Q     +  +  +L+  G       G  E   + L R   
Sbjct: 12  YRYQDEDTPPLKHSPAHLPNQANSPPVIVNTDTLEAPG-YVNGTEGEMEYEEITLER--G 68

Query: 62  GNSVGITLAGGSDYESKE----ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHK 117
            + +G ++AGG+D         I + K+I G  A +DGRL+  D IL +N   ++ +TH 
Sbjct: 69  NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 128

Query: 118 ESLAILKRGP----------------PVEITLIKDGAGLGFSLEGGKDSPF--GDQPLTV 159
            ++  LK                    +EI LIK   GLGFS+ GG  +    GD  + V
Sbjct: 129 AAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYV 188

Query: 160 KKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND 205
            KI  GG A K+G+L+ GD+IL +N+V + ++   +A + LK   D
Sbjct: 189 TKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYD 234

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 77.3 bits (189), Expect = 5e-15
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 5/92 (5%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
               E   +V+HR      +G  + GG D   + I +  +++G PAD  G L+KGD+ILS
Sbjct: 303 DIPREPRRIVIHRG--STGLGFNIVGGED--GEGIFISFILAGGPADLSGELRKGDQILS 358

Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
           +NG  ++  +H+++   LK  G  V I     
Sbjct: 359 VNGVDLRNASHEQAAIALKNAGQTVTIIAQYK 390

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 76.1 bits (186), Expect = 1e-14
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
             P  I + +   GLGF++ GG+D       + +  I  GG A+ +G+L+ GD+IL++N 
Sbjct: 306 REPRRIVIHRGSTGLGFNIVGGEDGE----GIFISFILAGGPADLSGELRKGDQILSVNG 361

Query: 186 VPVTEMSRIEAWSLLKKLND 205
           V +   S  +A   LK    
Sbjct: 362 VDLRNASHEQAAIALKNAGQ 381

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score =  109 bits (275), Expect = 6e-29
 Identities = 39/97 (40%), Positives = 62/97 (63%), Gaps = 2/97 (2%)

Query: 39  GCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQ 98
           G     +     + V +LH++  G  +G +LAGG+D E+K ITVH+V     A ++G +Q
Sbjct: 4   GSSGATLKQLDGIHVTILHKE-EGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQ 62

Query: 99  KGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLI 134
           KG+ +LSINGKS+KG TH ++LAIL++   P +  ++
Sbjct: 63  KGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIV 99

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 91.4 bits (227), Expect = 2e-22
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
            G  V I   ++GAGLGFSL GG D    ++ +TV ++F  G A + G ++ G+E+L+IN
Sbjct: 14  DGIHVTILHKEEGAGLGFSLAGGADLE--NKVITVHRVFPNGLASQEGTIQKGNEVLSIN 71

Query: 185 NVPVTEMSRIEAWSLLKK 202
              +   +  +A ++L++
Sbjct: 72  GKSLKGTTHHDALAILRQ 89

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score =  107 bits (269), Expect = 5e-28
 Identities = 33/85 (38%), Positives = 50/85 (58%)

Query: 118 ESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAG 177
           E+L          ITL +   GLGFS+ GG  SP GD P+ VK +F  G A ++G+LK G
Sbjct: 16  ENLYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRG 75

Query: 178 DEILTINNVPVTEMSRIEAWSLLKK 202
           D+I+ +N   +  ++  EA ++LK+
Sbjct: 76  DQIIAVNGQSLEGVTHEEAVAILKR 100

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 94.3 bits (235), Expect = 2e-23
 Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 5/101 (4%)

Query: 39  GCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSD--YESKEITVHKVISGTPADRDGR 96
           G  +L      +   + L R    + +G ++ GG    +    I V  V +   A  DGR
Sbjct: 14  GTENLYFQSMPQCKSITLERG--PDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGR 71

Query: 97  LQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
           L++GD+I+++NG+S++G+TH+E++AILKR    V + ++  
Sbjct: 72  LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSS 112

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score =  114 bits (285), Expect = 7e-28
 Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 28/163 (17%)

Query: 57  HRDLPGNSVGITLA-GGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLT 115
                G  +G+ +   G       + +  +++G PA R G+L  GD+I+SING S+ GL 
Sbjct: 210 LEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLP 269

Query: 116 HKESLAILK-------------RGPPVEITLI---KDGAGLGFSLEGGKDSPFGDQPLTV 159
                 I+K               PPV   LI        LGFS++ G           +
Sbjct: 270 LATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGI----------I 319

Query: 160 KKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK 202
             +  GG AE+ G ++ G  I+ IN   V   +  +    L  
Sbjct: 320 CSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSN 361

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 66.5 bits (161), Expect = 5e-12
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 14/119 (11%)

Query: 15  STSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSD 74
           S   +     Q +I    + L       L I     V+ V++ R      +G ++  G  
Sbjct: 264 SLVGLPLATCQGII----KGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNG-- 317

Query: 75  YESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITL 133
                  +  ++ G  A+R G ++ G RI+ ING+S+    H++ +  L      EI +
Sbjct: 318 ------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSNSVG-EIHM 368

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 57.3 bits (137), Expect = 5e-09
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 137 GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEA 196
           G  LG  +            + +  +  GG A ++G+L  GD+I++IN   +  +     
Sbjct: 215 GEILGVVVVESGWGS-ILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATC 273

Query: 197 WSLLKKL 203
             ++K L
Sbjct: 274 QGIIKGL 280

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score =  105 bits (263), Expect = 2e-27
 Identities = 30/83 (36%), Positives = 43/83 (51%)

Query: 124 KRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
           K G  + I L K   GLGFS+     +  G  P+ VK I   G A ++G+LKAGD ++ +
Sbjct: 8   KVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 67

Query: 184 NNVPVTEMSRIEAWSLLKKLNDG 206
           N V +   S+ E  SLL+     
Sbjct: 68  NGVDLAGKSQEEVVSLLRSTKME 90

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 85.1 bits (211), Expect = 3e-20
 Identities = 18/88 (20%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILSIN 107
           +   + L +      +G ++            I V  ++    A +DGRL+ GDR++ +N
Sbjct: 11  KRLNIQLKKG--TEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVN 68

Query: 108 GKSMKGLTHKESLAILKR-GPPVEITLI 134
           G  + G + +E +++L+       ++L+
Sbjct: 69  GVDLAGKSQEEVVSLLRSTKMEGTVSLL 96

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score =  103 bits (258), Expect = 2e-26
 Identities = 32/95 (33%), Positives = 47/95 (49%)

Query: 112 KGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKN 171
           + L  + S    K G  + I L K   GLGFS+     +  G  P+ VK I   G A ++
Sbjct: 15  ENLYFQGSYNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQD 74

Query: 172 GQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG 206
           G+LKAGD ++ +N V +   S+ E  SLL+     
Sbjct: 75  GRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKME 109

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 85.1 bits (211), Expect = 4e-20
 Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILSI 106
            +   + L +      +G ++            I V  ++    A +DGRL+ GDR++ +
Sbjct: 29  GKRLNIQLKKG--TEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 86

Query: 107 NGKSMKGLTHKESLAILKRGPP 128
           NG  + G + +E +++L+    
Sbjct: 87  NGVDLVGKSQEEVVSLLRSTKM 108

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score =  102 bits (255), Expect = 3e-26
 Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 31  SNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTP 90
           S+ S     CP  ++PG  +  ++ + +    + +G+++ GG D     I +H+V     
Sbjct: 2   SSGSSGPATCP--IVPG--QEMIIEISKG--RSGLGLSIVGGKDTPLNAIVIHEVYEEGA 55

Query: 91  ADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
           A RDGRL  GD+IL +NG  ++  +H+E++  L++    V + + +D A 
Sbjct: 56  AARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAH 105

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 87.5 bits (217), Expect = 5e-21
 Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
           G  + I + K  +GLG S+ GGKD+P     + + +++  G A ++G+L AGD+IL +N 
Sbjct: 16  GQEMIIEISKGRSGLGLSIVGGKDTPLN--AIVIHEVYEEGAAARDGRLWAGDQILEVNG 73

Query: 186 VPVTEMSRIEAWSLLKK 202
           V +   S  EA + L++
Sbjct: 74  VDLRNSSHEEAITALRQ 90

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score =  100 bits (252), Expect = 7e-26
 Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 6/95 (6%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKE---ITVHKVISGTPADRDGRLQKGDRIL 104
           +     V LH++  GN+ G  + GG+  +  +   + +  V  G PADR+G ++ GDR+L
Sbjct: 1   SMRTVEVTLHKE--GNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLL 58

Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITLIKDGA 138
           S++G  + G TH E+++ILK+ G    + +  D +
Sbjct: 59  SVDGIRLLGTTHAEAMSILKQCGQEAALLIEYDVS 93

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 90.7 bits (226), Expect = 2e-22
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSP-FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           VE+TL K+G   GF + GG        +P+ +  +  GG A++ G +K GD +L+++ + 
Sbjct: 5   VEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIR 64

Query: 188 VTEMSRIEAWSLLKK 202
           +   +  EA S+LK+
Sbjct: 65  LLGTTHAEAMSILKQ 79

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score =  100 bits (251), Expect = 2e-25
 Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 4/113 (3%)

Query: 30  ESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE--ITVHKVIS 87
             + S         L   +    VV + +D PG S+G+T+AGG+ +   +  I V  V  
Sbjct: 4   HHHHSSGVDLGTENLYFQSMHEKVVNIQKD-PGESLGMTVAGGASHREWDLPIYVISVEP 62

Query: 88  GTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
           G    RDGR++ GD +L+++G  +  ++  E++A+LKR    + +  ++   G
Sbjct: 63  GGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKEG 115

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 89.4 bits (222), Expect = 1e-21
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 113 GLTHKESLAILKRGPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKN 171
           G+         +      + + KD G  LG ++ GG      D P+ V  +  GG   ++
Sbjct: 10  GVDLGTENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRD 69

Query: 172 GQLKAGDEILTINNVPVTEMSRIEAWSLLKK 202
           G++K GD +L ++ V +TE+SR EA +LLK+
Sbjct: 70  GRIKTGDILLNVDGVELTEVSRSEAVALLKR 100

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 99.8 bits (249), Expect = 2e-25
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
           +     V L +D   N +GI++ GG+ Y    + + +V   TPA  DG +  GD I  +N
Sbjct: 22  SMVPGKVTLQKD-AQNLIGISIGGGAQY-CPCLYIVQVFDNTPAALDGTVAAGDEITGVN 79

Query: 108 GKSMKGLTHKESLAILKR-GPPVEITLIK 135
           G+S+KG T  E   +++     V I   K
Sbjct: 80  GRSIKGKTKVEVAKMIQEVKGEVTIHYNK 108

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 81.0 bits (200), Expect = 9e-19
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 128 PVEITLIKDGAG-LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           P ++TL KD    +G S+ GG         L + ++F    A  +G + AGDEI  +N  
Sbjct: 25  PGKVTLQKDAQNLIGISIGGGAQY---CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGR 81

Query: 187 PVTEMSRIEAWSLLKKLND 205
            +   +++E   +++++  
Sbjct: 82  SIKGKTKVEVAKMIQEVKG 100

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 99.0 bits (247), Expect = 3e-25
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPF-GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
              + L+KD  GLGFS+   +D        + ++ +   G AE++G L  GD ++++N  
Sbjct: 16  VKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEY 75

Query: 187 PVTEMSRIEAWSLLKKLNDGTIQ 209
            +   S  EA  +LK +  G + 
Sbjct: 76  CLDNTSLAEAVEILKAVPPGLVH 98

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 86.3 bits (214), Expect = 1e-20
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKE---ITVHKVISGTPADRDGRLQKGDRIL 104
           + EV +V L +D     +G ++    D        I +  +++   A+R G L  GDR++
Sbjct: 13  SPEVKIVELVKD--CKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLV 70

Query: 105 SINGKSMKGLTHKESLAILKRGPPVEITL 133
           S+N   +   +  E++ ILK  PP  + L
Sbjct: 71  SVNEYCLDNTSLAEAVEILKAVPPGLVHL 99

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 99.4 bits (248), Expect = 4e-25
 Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILS 105
           +  +  V + +  P +S+GI++AGG      +  I +  +     A +  +L+ GDRI++
Sbjct: 22  SMGLRTVEMKKG-PTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVT 80

Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIKDG 137
           I G S +G+TH +++ +LK     +E+ ++  G
Sbjct: 81  ICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGG 113

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 97.4 bits (243), Expect = 2e-24
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 128 PVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
              + + K     LG S+ GG  SP GD P+ +  +   G A +  +L+ GD I+TI   
Sbjct: 25  LRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGT 84

Query: 187 PVTEMSRIEAWSLLKK 202
               M+  +A +LLK 
Sbjct: 85  STEGMTHTQAVNLLKN 100

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 99.4 bits (248), Expect = 4e-25
 Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
            E+ ++ L +D   N +G++LAG  D     I V  +    PA  DGR++ GD +L IN 
Sbjct: 24  GELHIIELEKD--KNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINN 81

Query: 109 KSMKGLTHKESLAILKR-GPPVEITLIKD 136
           + + G +H+ + AI+K     V++  I++
Sbjct: 82  QILYGRSHQNASAIIKTAPSKVKLVFIRN 110

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 86.7 bits (215), Expect = 1e-20
 Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
            G    I L KD  GLG SL G KD       + V  I   G A  +G+++ GDE+L IN
Sbjct: 23  PGELHIIELEKDKNGLGLSLAGNKDR--SRMSIFVVGINPEGPAAADGRMRIGDELLEIN 80

Query: 185 NVPVTEMSRIEAWSLLKK 202
           N  +   S   A +++K 
Sbjct: 81  NQILYGRSHQNASAIIKT 98

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 99.1 bits (247), Expect = 4e-25
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
           G  V +  IK    L  +LEGG DSP G   + V  ++ GG AE++G +  GDEI+ IN 
Sbjct: 16  GKDVRLLRIKKEGSLDLALEGGVDSPVG--KVVVSAVYEGGAAERHGGVVKGDEIMAING 73

Query: 186 VPVTEMSRIEAWSLLKKLNDGTIQDIK 212
             VT+ +  EA + L+K  +     I 
Sbjct: 74  KIVTDYTLAEAEAALQKAWNQGGDWID 100

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 94.1 bits (234), Expect = 3e-23
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 3/99 (3%)

Query: 39  GCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQ 98
           G  ++  P       V L R     S+ + L GG D    ++ V  V  G  A+R G + 
Sbjct: 4   GAATMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVV 63

Query: 99  KGDRILSINGKSMKGLTHKESLAILKR---GPPVEITLI 134
           KGD I++INGK +   T  E+ A L++        I L+
Sbjct: 64  KGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLV 102

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 97.7 bits (244), Expect = 6e-25
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
           + E+  V LH+   G  +GI L   +D     + +  ++ G  A +DGRL   DR+L+IN
Sbjct: 1   SMEILQVALHKRDSGEQLGIKLVRRTDEPG--VFILDLLEGGLAAQDGRLSSNDRVLAIN 58

Query: 108 GKSMKGLTHKESLAILKR-GPPVEITLIKDG 137
           G  +K  T + +  I++  G  V +T+ + G
Sbjct: 59  GHDLKYGTPELAAQIIQASGERVNLTIARPG 89

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 73.1 bits (180), Expect = 3e-16
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 129 VEITLIKD--GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           +++ L K   G  LG  L    D P     + +  +  GG A ++G+L + D +L IN  
Sbjct: 5   LQVALHKRDSGEQLGIKLVRRTDEP----GVFILDLLEGGLAAQDGRLSSNDRVLAINGH 60

Query: 187 PVTEMSRIEAWSLLKK 202
            +   +   A  +++ 
Sbjct: 61  DLKYGTPELAAQIIQA 76

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 98.3 bits (245), Expect = 1e-24
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
            +    V L +D   N +GI++ GG+ Y    + + +V   TPA  DG +  GD I  +N
Sbjct: 17  PTVPGKVTLQKD-AQNLIGISIGGGAQY-CPCLYIVQVFDNTPAALDGTVAAGDEITGVN 74

Query: 108 GKSMKGLTHKESLAILKR-GPPVEITLIKDGA 138
           G+S+KG T  E   +++     V I   K  A
Sbjct: 75  GRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQA 106

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 77.9 bits (192), Expect = 2e-17
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 128 PVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           P ++TL KD    +G S+ GG         L + ++F    A  +G + AGDEI  +N  
Sbjct: 20  PGKVTLQKDAQNLIGISIGGGAQY---CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGR 76

Query: 187 PVTEMSRIEAWSLLKK 202
            +   +++E   ++++
Sbjct: 77  SIKGKTKVEVAKMIQE 92

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 97.1 bits (242), Expect = 2e-24
 Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 8/97 (8%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
           S  ++V + +     ++GI + GG++       +  +  G  A   G+L+ G  IL +NG
Sbjct: 5   SSGTLVRVKK--SAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNG 62

Query: 109 KSMKGLTHKESLAILKRG------PPVEITLIKDGAG 139
            +++G  H+E+  I+           ++  + +  +G
Sbjct: 63  LTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFNSG 99

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 80.2 bits (198), Expect = 1e-18
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
           + + K  A LG ++EGG ++        +  I  GG A   GQLK G  IL +N + +  
Sbjct: 10  VRVKKSAATLGIAIEGGANTRQP--LPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRG 67

Query: 191 MSRIEAWSLLKK 202
               EA  ++ +
Sbjct: 68  KEHREAARIIAE 79

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 96.6 bits (241), Expect = 2e-24
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
                + L++  AG G +L GG+D   GD PL V+ +   G A++ G+L+ GD +L IN 
Sbjct: 10  SGHFSVELVRGYAGFGLTLGGGRDVA-GDTPLAVRGLLKDGPAQRCGRLEVGDLVLHING 68

Query: 186 VPVTEMSRIEAWSLLKK 202
                ++  +A   ++ 
Sbjct: 69  ESTQGLTHAQAVERIRA 85

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 92.4 bits (230), Expect = 6e-23
 Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYESKE-ITVHKVISGTPADRDGRLQKGDRILSIN 107
           S    V L R       G+TL GG D      + V  ++   PA R GRL+ GD +L IN
Sbjct: 10  SGHFSVELVRG--YAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHIN 67

Query: 108 GKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
           G+S +GLTH +++  ++  GP + + + +  +G
Sbjct: 68  GESTQGLTHAQAVERIRAGGPQLHLVIRRPLSG 100

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 96.5 bits (241), Expect = 2e-24
 Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 5/94 (5%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRI 103
           P   ++  V L ++   NS+GI++ GG +   +   I V  VI    A+ DGR+ KGDR+
Sbjct: 1   PKPGDIFEVELAKN--DNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRV 58

Query: 104 LSINGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
           L++NG S++G THK+++  L+  G  V + L K 
Sbjct: 59  LAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 92

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 92.3 bits (230), Expect = 5e-23
 Identities = 21/74 (28%), Positives = 37/74 (50%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
            E+ L K+   LG S+ GG ++      + VK +   G AE +G++  GD +L +N V +
Sbjct: 7   FEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSL 66

Query: 189 TEMSRIEAWSLLKK 202
              +  +A   L+ 
Sbjct: 67  EGATHKQAVETLRN 80

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 95.1 bits (237), Expect = 6e-24
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
            + + +      +G+++ GGSD     I +H+V     A +DGRL  GD+IL +NG  ++
Sbjct: 7   TIEISKG--RTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLR 64

Query: 113 GLTHKESLAILKR-GPPVEITLIKD 136
             TH E++ +L++    V +TL +D
Sbjct: 65  KATHDEAINVLRQTPQRVRLTLYRD 89

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 91.6 bits (228), Expect = 1e-22
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
           G    I + K   GLG S+ GG D+  G   + + +++  G A K+G+L AGD+IL +N 
Sbjct: 3   GCETTIEISKGRTGLGLSIVGGSDTLLG--AIIIHEVYEEGAACKDGRLWAGDQILEVNG 60

Query: 186 VPVTEMSRIEAWSLLKK 202
           + + + +  EA ++L++
Sbjct: 61  IDLRKATHDEAINVLRQ 77

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 95.5 bits (238), Expect = 6e-24
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
            G   +  V+L ++     +GI++ GG ++    I + ++  G PADR G L  GD IL+
Sbjct: 5   QGVGPIRKVLLLKE-DHEGLGISITGGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILA 62

Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITL 133
           +NG +++   HKE++ IL +    +E  +
Sbjct: 63  VNGVNLRDTKHKEAVTILSQQRGEIEFEV 91

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 83.2 bits (206), Expect = 1e-19
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 126 GPPVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
           GP  ++ L+K D  GLG S+ GGK+      P+ + +I  G  A++ G L  GD IL +N
Sbjct: 8   GPIRKVLLLKEDHEGLGISITGGKEH---GVPILISEIHPGQPADRCGGLHVGDAILAVN 64

Query: 185 NVPVTEMSRIEAWSLLKK 202
            V + +    EA ++L +
Sbjct: 65  GVNLRDTKHKEAVTILSQ 82

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 96.8 bits (241), Expect = 1e-23
 Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 11/160 (6%)

Query: 47  GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
           G  +   V+L +D     +G+ L    +     I V  V + +PA   G L+ GD++L I
Sbjct: 1   GAMDPREVILCKD-QDGKIGLRLKSIDNG----IFVQLVQANSPASLVG-LRFGDQVLQI 54

Query: 107 NGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSP----FGDQPLTVKKI 162
           NG++  G +  ++  +LK+    +IT+         ++   KDS     F  +   +  I
Sbjct: 55  NGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSI 114

Query: 163 FTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK 202
                A +NG L     I  IN   V  +   +   +L  
Sbjct: 115 VKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILST 153

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 62.9 bits (153), Expect = 6e-12
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 8/82 (9%)

Query: 128 PVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           P E+ L KD    +G  L+   +  F      V+ +     A   G L+ GD++L IN  
Sbjct: 5   PREVILCKDQDGKIGLRLKSIDNGIF------VQLVQANSPASLVG-LRFGDQVLQINGE 57

Query: 187 PVTEMSRIEAWSLLKKLNDGTI 208
                S  +A  +LK+     I
Sbjct: 58  NCAGWSSDKAHKVLKQAFGEKI 79

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 54.1 bits (130), Expect = 8e-09
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 16/122 (13%)

Query: 15  STSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSD 74
           + +  S  +  +++ ++      G   ++ I        + +H+D  G  VG     G  
Sbjct: 58  NCAGWSSDKAHKVLKQA-----FGEKITMTIRDRPFERTITMHKDSTG-HVGFIFKNGKI 111

Query: 75  YESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITL 133
                     ++  + A R+G L     I  ING+++ GL   +   IL   G  V IT+
Sbjct: 112 --------TSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 162

Query: 134 IK 135
           + 
Sbjct: 163 MP 164

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 95.6 bits (238), Expect = 1e-23
 Identities = 20/81 (24%), Positives = 36/81 (44%)

Query: 122 ILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEIL 181
           +L +           GA LG  + GGK +  G     + K+  G  A+  G L+ GDE+L
Sbjct: 32  LLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVL 91

Query: 182 TINNVPVTEMSRIEAWSLLKK 202
             N   +   +  E ++++ +
Sbjct: 92  EWNGRLLQGATFEEVYNIILE 112

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 93.3 bits (232), Expect = 7e-23
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 6/116 (5%)

Query: 31  SNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE--ITVHKVISG 88
           + Q   +G      I     +    + RD  G  +G+ + GG   ES      + KV  G
Sbjct: 17  TWQPSKDGDRLIGRILLNKRLKDGSVPRD-SGAMLGLKVVGGKMTESGRLCAFITKVKKG 75

Query: 89  TPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR---GPPVEITLIKDGAGLG 141
           + AD  G L+ GD +L  NG+ ++G T +E   I+      P VE+ + + G   G
Sbjct: 76  SLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGPSSG 131

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 93.9 bits (234), Expect = 1e-23
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 47  GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
           G+ +   V + +      +GI++ GG + +   I + K+  G  AD+   L  GD ILS+
Sbjct: 1   GSLQRRRVTVRKA-DAGGLGISIKGGRENKMP-ILISKIFKGLAADQTEALFVGDAILSV 58

Query: 107 NGKSMKGLTHKESLAILKR-GPPVEITL 133
           NG+ +   TH E++  LK+ G  V + +
Sbjct: 59  NGEDLSSATHDEAVQALKKTGKEVVLEV 86

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 81.9 bits (203), Expect = 2e-19
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 126 GPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
                +T+ K    GLG S++GG+++     P+ + KIF G  A++   L  GD IL++N
Sbjct: 3   LQRRRVTVRKADAGGLGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVN 59

Query: 185 NVPVTEMSRIEAWSLLKK 202
              ++  +  EA   LKK
Sbjct: 60  GEDLSSATHDEAVQALKK 77

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 94.8 bits (236), Expect = 2e-23
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 2/99 (2%)

Query: 37  EGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGR 96
             G     +   S   +V + +  PG+++GI+L   S      IT+ ++   +  DR G 
Sbjct: 2   SSGSSGDTVANASGPLMVEIVKT-PGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGA 60

Query: 97  LQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLI 134
           L  GD ILSI+G SM+  +  E+  +L      V + ++
Sbjct: 61  LHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEIL 99

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 79.4 bits (196), Expect = 4e-18
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 128 PVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           P+ + ++K  G+ LG SL            +T+ +I      +++G L  GD IL+I+  
Sbjct: 16  PLMVEIVKTPGSALGISLTTTSLR--NKSVITIDRIKPASVVDRSGALHPGDHILSIDGT 73

Query: 187 PVTEMSRIEAWSLLKK 202
            +   S +EA  LL  
Sbjct: 74  SMEHCSLLEATKLLAS 89

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 93.1 bits (232), Expect = 3e-23
 Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 4/90 (4%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
           +    VV L +      +G  + GG + ++  I + +VI G  ADR G L++GD++LS+N
Sbjct: 3   SGSSGVVELPKT--DEGLGFNIMGGKE-QNSPIYISRVIPGGVADRHGGLKRGDQLLSVN 59

Query: 108 GKSMKGLTHKESLAILKR-GPPVEITLIKD 136
           G S++G  H++++ +LK     V++ +   
Sbjct: 60  GVSVEGEQHEKAVELLKAAQGSVKLVVRSG 89

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 88.8 bits (221), Expect = 1e-21
 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
           G    + L K   GLGF++ GGK+    + P+ + ++  GG A+++G LK GD++L++N 
Sbjct: 4   GSSGVVELPKTDEGLGFNIMGGKEQ---NSPIYISRVIPGGVADRHGGLKRGDQLLSVNG 60

Query: 186 VPVTEMSRIEAWSLLKK 202
           V V      +A  LLK 
Sbjct: 61  VSVEGEQHEKAVELLKA 77

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 93.1 bits (232), Expect = 3e-23
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 7/92 (7%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKE-----ITVHKVISGTPADRDGRLQKGDRIL 104
            + +V L +     S GI +  G   +S       I +  ++  +PA   GRL+ GDRIL
Sbjct: 5   LIHMVTLDKT-GKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRIL 63

Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITLIK 135
           S+NGK ++  T +  + ++K     +E+ +  
Sbjct: 64  SLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 73.9 bits (182), Expect = 2e-16
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 130 EITLIKDG-AGLGFSLEGGKDSP---FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
            +TL K G    G  +  G+           + +K I     A   G+LK GD IL++N 
Sbjct: 8   MVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNG 67

Query: 186 VPVTEMSRIEAWSLLKK 202
             V   +      L+K+
Sbjct: 68  KDVRNSTEQAVIDLIKE 84

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 93.8 bits (233), Expect = 4e-23
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYESKE---ITVHKVISGTPADRDGRLQKGDRILS 105
           +E + VVL  D P    GI L G             +  + + +PA+R G LQ GDR+++
Sbjct: 14  TETTEVVLTAD-PVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMA 72

Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITL 133
           ING   +  T +E+  +L+      ++TL
Sbjct: 73  INGIPTEDSTFEEANQLLRDSSITSKVTL 101

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 79.5 bits (196), Expect = 4e-18
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 128 PVEITLIKD-GAGLGFSLEGGKDSP-FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
             E+ L  D   G G  L+G   +      P  +  I     AE+ G L+ GD ++ IN 
Sbjct: 16  TTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAING 75

Query: 186 VPVTEMSRIEAWSLLKK 202
           +P  + +  EA  LL+ 
Sbjct: 76  IPTEDSTFEEANQLLRD 92

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 92.8 bits (231), Expect = 6e-23
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILSI 106
             V  V L R    + +G+ L  G         + +  ++ G+PA  DGRL  GDRIL +
Sbjct: 7   GYVFTVELERG--PSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEV 64

Query: 107 NGKSMKGLTHKESLAILKR-GPPVEITLIKDGAGLGFSLEGGKDS 150
           NG S+ GL +  ++ +++  G  +   + K        +  G  S
Sbjct: 65  NGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHSGPSS 109

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 90.5 bits (225), Expect = 4e-22
 Identities = 19/74 (25%), Positives = 34/74 (45%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
             + L +  +GLG  L  G  +  G   L ++ +  G  A  +G+L  GD IL +N   +
Sbjct: 10  FTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSL 69

Query: 189 TEMSRIEAWSLLKK 202
             +  + A  L++ 
Sbjct: 70  LGLGYLRAVDLIRH 83

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 92.5 bits (230), Expect = 8e-23
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
                +  V+L ++     +GI++ GG ++    I + ++  G PADR G L  GD IL+
Sbjct: 23  LYFQGIRKVLLLKE-DHEGLGISITGGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILA 80

Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITL 133
           +NG +++   HKE++ IL +    +E  +
Sbjct: 81  VNGVNLRDTKHKEAVTILSQQRGEIEFEV 109

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 79.4 bits (196), Expect = 3e-18
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
           +G    + L +D  GLG S+ GGK+      P+ + +I  G  A++ G L  GD IL +N
Sbjct: 26  QGIRKVLLLKEDHEGLGISITGGKEH---GVPILISEIHPGQPADRCGGLHVGDAILAVN 82

Query: 185 NVPVTEMSRIEAWSLLKK 202
            V + +    EA ++L +
Sbjct: 83  GVNLRDTKHKEAVTILSQ 100

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 92.4 bits (230), Expect = 9e-23
 Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 5/89 (5%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
               E   ++LH+      +G  + GG D E   I V  +++G PAD  G L++GDRILS
Sbjct: 11  GDAREPRKIILHKG--STGLGFNIVGGEDGEG--IFVSFILAGGPADLSGELRRGDRILS 66

Query: 106 INGKSMKGLTHKESLAILKRGPPVEITLI 134
           +NG +++  TH+++ A LKR     +T++
Sbjct: 67  VNGVNLRNATHEQAAAALKRAGQ-SVTIV 94

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 80.5 bits (199), Expect = 1e-18
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 4/75 (5%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           P +I L K   GLGF++ GG+D       + V  I  GG A+ +G+L+ GD IL++N V 
Sbjct: 16  PRKIILHKGSTGLGFNIVGGEDGE----GIFVSFILAGGPADLSGELRRGDRILSVNGVN 71

Query: 188 VTEMSRIEAWSLLKK 202
           +   +  +A + LK+
Sbjct: 72  LRNATHEQAAAALKR 86

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 92.0 bits (229), Expect = 9e-23
 Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 10/95 (10%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKE--------ITVHKVISGTPADRDGRLQK 99
           + +   V L R+ P  S+GI++ GG    S+         I +  V+  +PA ++G L+ 
Sbjct: 2   SMQPRRVELWRE-PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKP 60

Query: 100 GDRILSINGKSMKGLTHKESLAILKR-GPPVEITL 133
           GDRI+ ++G  ++  +H++++  +++ G PV   +
Sbjct: 61  GDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 95

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 76.6 bits (189), Expect = 2e-17
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 128 PVEITLIK-DGAGLGFSLEGGKDSPF------GDQPLTVKKIFTGGCAEKNGQLKAGDEI 180
           P  + L +     LG S+ GG+            + + +K +     A KNG LK GD I
Sbjct: 5   PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 64

Query: 181 LTINNVPVTEMSRIEAWSLLKK 202
           + ++ + + + S  +A   ++K
Sbjct: 65  VEVDGMDLRDASHEQAVEAIRK 86

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 92.4 bits (230), Expect = 1e-22
 Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 19/124 (15%)

Query: 17  SLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYE 76
           S+ +  E  QLI    Q                 V V  L +  P   +G ++ G     
Sbjct: 1   SMPACDEFDQLIKNMAQG--------------RHVEVFELLKP-PSGGLGFSVVGLRSEN 45

Query: 77  SKE--ITVHKVISGTPADRDGRLQKGDRILSINGKSM-KGLTHKESLAILKR-GPPVEIT 132
             E  I V ++  G+ A RDGRL++ D+IL+ING+++ + +TH+++++IL++    V++ 
Sbjct: 46  RGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLV 105

Query: 133 LIKD 136
           + + 
Sbjct: 106 IARG 109

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 86.7 bits (215), Expect = 1e-20
 Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 130 EITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
              L+K    GLGFS+ G +    G+  + V++I  G  A ++G+LK  D+IL IN   +
Sbjct: 23  VFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQAL 82

Query: 189 TE-MSRIEAWSLLKK 202
            + ++  +A S+L+K
Sbjct: 83  DQTITHQQAISILQK 97

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 92.0 bits (229), Expect = 1e-22
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 8/98 (8%)

Query: 47  GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE-----ITVHKVISGTPADRDGRLQKGD 101
           G+S   V  L R      +G ++AGG            I V ++  G  A R G LQ GD
Sbjct: 4   GSSGRHVACLARS--ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGD 61

Query: 102 RILSINGKSMKGLTHKESLAILKR-GPPVEITLIKDGA 138
           R+LSING  +    H  ++++L    P + + L ++  
Sbjct: 62  RVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAG 99

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 87.0 bits (216), Expect = 6e-21
 Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSP---FGDQPLTVKKIFTGGCAEKNGQLKAGDEILT 182
                  L +   GLGFS+ GGK S     GD  + V +I  GG A + G L+ GD +L+
Sbjct: 6   SGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLS 65

Query: 183 INNVPVTEMSRIEAWSLLKK 202
           IN V VTE     A SLL  
Sbjct: 66  INGVDVTEARHDHAVSLLTA 85

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 91.2 bits (227), Expect = 1e-22
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           +E+ L+K   GLGFS+ GG  +    GD  + + KI  GG A+K+G+L+ GD +L +NN 
Sbjct: 5   MEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNT 64

Query: 187 PVTEMSRIEAWSLLKK 202
            + ++   EA + LK 
Sbjct: 65  NLQDVRHEEAVASLKN 80

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 89.3 bits (222), Expect = 6e-22
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 7/96 (7%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKE----ITVHKVISGTPADRDGRLQKGDRI 103
           +  +  V L +      +G ++AGG   +       I + K+I G  A +DGRLQ GDR+
Sbjct: 1   SMTIMEVNLLKG--PKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRL 58

Query: 104 LSINGKSMKGLTHKESLAILKR-GPPVEITLIKDGA 138
           L++N  +++ + H+E++A LK     V + + K G+
Sbjct: 59  LAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPGS 94

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 91.2 bits (227), Expect = 1e-22
 Identities = 28/94 (29%), Positives = 55/94 (58%), Gaps = 6/94 (6%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKE---ITVHKVISGTPADRDGRLQKGDRIL 104
            SE   V L ++     +GIT+AG    +  E   I V  +   +  + DGR+Q GD+I+
Sbjct: 2   MSETFDVELTKN--VQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQII 59

Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITLIKDG 137
           +++G +++G T+++++ +L+  G  V +TL++ G
Sbjct: 60  AVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 93

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 129 VEITLIKDGAGLGFSLEGGKDS-PFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
            ++ L K+  GLG ++ G           + VK I      E +G+++ GD+I+ ++   
Sbjct: 6   FDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTN 65

Query: 188 VTEMSRIEAWSLLKK 202
           +   +  +A  +L+ 
Sbjct: 66  LQGFTNQQAVEVLRH 80

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 91.7 bits (228), Expect = 1e-22
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 8/96 (8%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDY-ESKEITVHKVISGTPADRDGRLQKGDRILSI 106
                 V+         +G+ + GG +  E   + +H+VI G    +DGRL+ GD+++SI
Sbjct: 12  RDPAFRVITVTK--ETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSI 69

Query: 107 NGKSMKGLTHKESLAILKR-----GPPVEITLIKDG 137
           N +SM G++ +E+ +I+ R       P EI  I+ G
Sbjct: 70  NKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSG 105

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 87.1 bits (216), Expect = 6e-21
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 123 LKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILT 182
           L R P   +  +    GLG  + GG +   G   + + ++  GG   K+G+LK GD++++
Sbjct: 10  LDRDPAFRVITVTKETGLGLKILGGINRNEGP-LVYIHEVIPGGDCYKDGRLKPGDQLVS 68

Query: 183 INNVPVTEMSRIEAWSLLKK 202
           IN   +  +S  EA S++ +
Sbjct: 69  INKESMIGVSFEEAKSIITR 88

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 92.1 bits (229), Expect = 2e-22
 Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 10/112 (8%)

Query: 31  SNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE--------ITV 82
            + S         L   + +   V L R+ P  S+GI++ GG    S+         I +
Sbjct: 5   HHHSSGVDLGTENLYFQSMQPRRVELWRE-PSKSLGISIVGGRGMGSRLSNGEVMRGIFI 63

Query: 83  HKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITL 133
             V+  +PA ++G L+ GDRI+ ++G  ++  +H++++  +++ G PV   +
Sbjct: 64  KHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 115

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 77.1 bits (190), Expect = 3e-17
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 113 GLTHKESLAILKRGPPVEITLIK-DGAGLGFSLEGGKDSPF------GDQPLTVKKIFTG 165
           G+         +   P  + L +     LG S+ GG+            + + +K +   
Sbjct: 10  GVDLGTENLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLED 69

Query: 166 GCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK 202
             A KNG LK GD I+ ++ + + + S  +A   ++K
Sbjct: 70  SPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRK 106

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 90.8 bits (226), Expect = 2e-22
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
            S+   + L +  PG  +G+++ G  +     + V  ++ G  AD DGRL +GD+IL +N
Sbjct: 2   MSDTLTIGLQKK-PGKGLGLSIVGKRNDTG--VFVSDIVKGGIADADGRLMQGDQILMVN 58

Query: 108 GKSMKGLTHKESLAILKR-GPPVEITL 133
           G+ ++  T +   A+LK     V + +
Sbjct: 59  GEDVRNATQEAVAALLKCSLGTVTLEV 85

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 75.0 bits (185), Expect = 6e-17
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 129 VEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           + I L K  G GLG S+ G ++       + V  I  GG A+ +G+L  GD+IL +N   
Sbjct: 6   LTIGLQKKPGKGLGLSIVGKRNDT----GVFVSDIVKGGIADADGRLMQGDQILMVNGED 61

Query: 188 VTEMSRIEAWSLLKK 202
           V   ++    +LLK 
Sbjct: 62  VRNATQEAVAALLKC 76

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 92.1 bits (229), Expect = 2e-22
 Identities = 24/128 (18%), Positives = 60/128 (46%), Gaps = 19/128 (14%)

Query: 13  ASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGG 72
           +S +S +  ++   +I +  Q                ++  + + R      +G ++   
Sbjct: 2   SSGSSGLGNEDFNSVIQQMAQG--------------RQIEYIDIERP-STGGLGFSVVAL 46

Query: 73  SDYESKE--ITVHKVISGTPADRDGRLQKGDRILSINGKSM-KGLTHKESLAILKR-GPP 128
                 +  I V  V  G+ ADRD RL++ D+IL+IN   + + ++H++++A+L++    
Sbjct: 47  RSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGS 106

Query: 129 VEITLIKD 136
           + + + ++
Sbjct: 107 LRLIVARE 114

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 87.9 bits (218), Expect = 5e-21
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 129 VEITLIKDGA-GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
             I + +    GLGFS+   +    G   + VK +  G  A+++ +LK  D+IL IN+ P
Sbjct: 27  EYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTP 86

Query: 188 VTE-MSRIEAWSLLKK 202
           + + +S  +A +LL++
Sbjct: 87  LDQNISHQQAIALLQQ 102

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 91.3 bits (227), Expect = 2e-22
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 10/100 (10%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKE-------ITVHKVISGTPADRDGRLQKG 100
           + +   +VLHRD    S+G  + GG              I V K++   PA ++G LQ  
Sbjct: 6   SGKSLTLVLHRD--SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIH 63

Query: 101 DRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
           DRI+ +NG+ +   TH +++   K    P+ + +++  +G
Sbjct: 64  DRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSG 103

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 84.4 bits (209), Expect = 5e-20
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDS-----PFGDQPLTVKKIFTGGCAEKNGQLKAGDEI 180
           G  + + L +D   LGF++ GG+ S         + + V KI   G A K G L+  D I
Sbjct: 7   GKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRI 66

Query: 181 LTINNVPVTEMSRIEAWSLLKK 202
           + +N   ++  +  +A    K 
Sbjct: 67  IEVNGRDLSRATHDQAVEAFKT 88

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 91.3 bits (227), Expect = 2e-22
 Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 8/107 (7%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKE-ITVHKVISGTPADRDGRLQKGDRILSING 108
            +  V L+ +   N +GI++ G S+      I +  ++ G     DGR++ GD +L +N 
Sbjct: 5   NIITVTLNME-KYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVND 63

Query: 109 KSMKGLTHKESLAILK----RGPPVEITLIKDGAGLGFSLEGGKDSP 151
            + + +++ +++ +L+    +  P+ +T+ K G   G   E   D P
Sbjct: 64  MNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGG--GSGNEVWIDGP 108

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 81.7 bits (202), Expect = 4e-19
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 129 VEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           + +TL  +    LG S+ G  +   GD  + +  I  GG    +G+++ GD +L +N++ 
Sbjct: 7   ITVTLNMEKYNFLGISIVGQSNER-GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMN 65

Query: 188 VTEMSRIEAWSLLKK 202
              MS  +A  +L+ 
Sbjct: 66  FENMSNDDAVRVLRD 80

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 91.7 bits (228), Expect = 2e-22
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKE----ITVHKVISGTPADRDGRLQKGDRILS 105
           E   V L R   G S+GI + G            I V  VI G+ A  +G +Q  D+I++
Sbjct: 15  ETYNVELVRK-DGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVA 73

Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
           ++G +++G  + + + +L+  G  V +TL++    
Sbjct: 74  VDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTS 108

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 75.2 bits (185), Expect = 2e-16
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 128 PVEITLIK-DGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
              + L++ DG  LG  + G   +        + VK +  G  A  NG ++  D+I+ ++
Sbjct: 16  TYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVD 75

Query: 185 NVPVTEMSRIEAWSLLKK 202
            V +   +  +   +L+ 
Sbjct: 76  GVNIQGFANHDVVEVLRN 93

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 90.8 bits (226), Expect = 2e-22
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
            +   V L R    +  G  + GG +   + I +  VI+   ADRDGRL  GD ++ ++G
Sbjct: 8   YKELDVHLRRM--ESGFGFRILGGDE-PGQPILIGAVIAMGSADRDGRLHPGDELVYVDG 64

Query: 109 KSMKGLTHKESLAILKR-GPPVEITLI 134
             + G TH+  + ++       ++ L 
Sbjct: 65  IPVAGKTHRYVIDLMHHAARNGQVNLT 91

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 88.5 bits (220), Expect = 1e-21
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
           +++ L +  +G GF + GG +     QP+ +  +   G A+++G+L  GDE++ ++ +PV
Sbjct: 11  LDVHLRRMESGFGFRILGGDEP---GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPV 67

Query: 189 TEMSRIEAWSLLKK 202
              +      L+  
Sbjct: 68  AGKTHRYVIDLMHH 81

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 90.9 bits (226), Expect = 3e-22
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
             V  V L  D  G+ +G  + GG       + V  ++ G  ADRDGRLQ GD IL I G
Sbjct: 14  GHVEEVELIND--GSGLGFGIVGGKT---SGVVVRTIVPGGLADRDGRLQTGDHILKIGG 68

Query: 109 KSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
            +++G+T ++   +L+  G  V + + +D AG
Sbjct: 69  TNVQGMTSEQVAQVLRNCGNSVRMLVARDPAG 100

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 86.3 bits (214), Expect = 1e-20
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 5/77 (6%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
           G   E+ LI DG+GLGF + GGK S      + V+ I  GG A+++G+L+ GD IL I  
Sbjct: 14  GHVEEVELINDGSGLGFGIVGGKTSG-----VVVRTIVPGGLADRDGRLQTGDHILKIGG 68

Query: 186 VPVTEMSRIEAWSLLKK 202
             V  M+  +   +L+ 
Sbjct: 69  TNVQGMTSEQVAQVLRN 85

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 89.6 bits (223), Expect = 4e-22
 Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 130 EITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVT 189
           +I L +   G GF + GG +     +P+ +  I   G A+ +G+L++GDE+++++  PV 
Sbjct: 5   DIFLWRKETGFGFRILGGNEP---GEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVI 61

Query: 190 EMSRIEAWSLLKK 202
             S      L+++
Sbjct: 62  GKSHQLVVQLMQQ 74

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 87.7 bits (218), Expect = 2e-21
 Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
           S    + L R       G  + GG++   + I +  ++    AD DGRL+ GD ++S++G
Sbjct: 1   SMEQDIFLWRK--ETGFGFRILGGNE-PGEPIYIGHIVPLGAADTDGRLRSGDELISVDG 57

Query: 109 KSMKGLTHKESLAILKR-GPPVEITLI 134
             + G +H+  + ++++      + L 
Sbjct: 58  TPVIGKSHQLVVQLMQQAAKQGHVNLT 84

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 90.5 bits (225), Expect = 5e-22
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 4/90 (4%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
           + +   V L R       G +L GG +Y    + V ++    PA+R G+++ GD IL IN
Sbjct: 22  SMDFYTVELERG--AKGFGFSLRGGREYNMD-LYVLRLAEDGPAERSGKMRIGDEILEIN 78

Query: 108 GKSMKGLTHKESLAILKR-GPPVEITLIKD 136
           G++ K + H  ++ ++K  G  V + L + 
Sbjct: 79  GETTKNMKHSRAIELIKNGGRRVRLFLKRG 108

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 87.0 bits (216), Expect = 7e-21
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 130 EITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVT 189
            + L +   G GFSL GG++    +  L V ++   G AE++G+++ GDEIL IN     
Sbjct: 27  TVELERGAKGFGFSLRGGREY---NMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTK 83

Query: 190 EMSRIEAWSLLKK 202
            M    A  L+K 
Sbjct: 84  NMKHSRAIELIKN 96

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 90.5 bits (225), Expect = 5e-22
 Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           VEI L K   GLGFS+ GG  +    GD  + V KI  GG A+K+G+L+ GD +L +NN 
Sbjct: 26  VEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNY 85

Query: 187 PVTEMSRIEAWSLLKK 202
            + E++  EA ++LK 
Sbjct: 86  SLEEVTHEEAVAILKN 101

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 89.7 bits (223), Expect = 8e-22
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 7/96 (7%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKE----ITVHKVISGTPADRDGRLQKGDRI 103
           +  V  + L +      +G ++AGG   +       I V K+I G  A +DGRLQ GDR+
Sbjct: 22  SMTVVEIKLFKG--PKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRL 79

Query: 104 LSINGKSMKGLTHKESLAILKR-GPPVEITLIKDGA 138
           L +N  S++ +TH+E++AILK     V + + K   
Sbjct: 80  LMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTT 115

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 89.7 bits (223), Expect = 5e-22
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
           + +  V L R   G  +GIT++G  +     I +  +  G  A+R G +  GDRIL+IN 
Sbjct: 4   AIIYTVELKRY--GGPLGITISGTEEPFDP-IIISSLTKGGLAERTGAIHIGDRILAINS 60

Query: 109 KSMKGLTHKESLAILKR-GPPVEITLIKD 136
            S+KG    E++ +L+  G  V + + K 
Sbjct: 61  SSLKGKPLSEAIHLLQMAGETVTLKIKKQ 89

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 80.4 bits (199), Expect = 8e-19
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 130 EITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVT 189
            + L + G  LG ++ G ++      P+ +  +  GG AE+ G +  GD IL IN+  + 
Sbjct: 8   TVELKRYGGPLGITISGTEEP---FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLK 64

Query: 190 EMSRIEAWSLLKK 202
                EA  LL+ 
Sbjct: 65  GKPLSEAIHLLQM 77

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 89.2 bits (222), Expect = 6e-22
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
           +   L K   G GF++ GG +    D+ L +K +   G A  +G+++ GD I+++N+  V
Sbjct: 2   IHTKLRKSSRGFGFTVVGGDEP---DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCV 58

Query: 189 TEMSRIEAWSLLKKLNDGT 207
              +  +   + + +  G 
Sbjct: 59  LGHTHAQVVKIFQSIPIGA 77

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 82.7 bits (205), Expect = 1e-19
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)

Query: 54  VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
             L +       G T+ GG +   + + +  ++   PA  DG+++ GD I+S+N   + G
Sbjct: 4   TKLRKS--SRGFGFTVVGGDE-PDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLG 60

Query: 114 LTHKESLAILKR---GPPVEITL 133
            TH + + I +    G  V++ L
Sbjct: 61  HTHAQVVKIFQSIPIGASVDLEL 83

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 90.2 bits (224), Expect = 7e-22
 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 10/100 (10%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYESKE--------ITVHKVISGTPADRDGRLQKG 100
               +V + R+ P  S+GI++ GG     +         I + +V+  +PA +   L+ G
Sbjct: 14  GPPRIVEIFRE-PNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTG 72

Query: 101 DRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
           D+IL ++G  ++  +H E++  +K  G PV   +    + 
Sbjct: 73  DKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSST 112

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 81.4 bits (201), Expect = 9e-19
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 126 GPPVEITLIKD-GAGLGFSLEGGKDSPFG------DQPLTVKKIFTGGCAEKNGQLKAGD 178
           GPP  + + ++    LG S+ GG+            + + +K++     A K   LK GD
Sbjct: 14  GPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGD 73

Query: 179 EILTINNVPVTEMSRIEAWSLLKK 202
           +IL ++ V +   S  EA   +K 
Sbjct: 74  KILEVSGVDLQNASHSEAVEAIKN 97

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 89.0 bits (221), Expect = 8e-22
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
           +G   E+ + K    LG ++        G     +K+I  GG  +    +  GD I +IN
Sbjct: 3   KGIEKEVNVYKSEDSLGLTITDN-----GVGYAFIKRIKDGGVIDSVKTICVGDHIESIN 57

Query: 185 NVPVTEMSRIEAWSLLKKLNDGTIQDIK 212
              +      +    LK+L    +  +K
Sbjct: 58  GENIVGWRHYDVAKKLKELKKEELFTMK 85

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 70.9 bits (174), Expect = 2e-15
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 8/89 (8%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
               V +++    +S+G+T+            + ++  G   D    +  GD I SING+
Sbjct: 5   IEKEVNVYKS--EDSLGLTITDNGV---GYAFIKRIKDGGVIDSVKTICVGDHIESINGE 59

Query: 110 SMKGLTHKESLAILK---RGPPVEITLIK 135
           ++ G  H +    LK   +     + LI+
Sbjct: 60  NIVGWRHYDVAKKLKELKKEELFTMKLIE 88

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 89.3 bits (222), Expect = 8e-22
 Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKE----ITVHKVISGTPADRDGRLQKGDRILS 105
            +  V L R+   +S+GI+++G  D  +      I V  +I G+ A  DGR++  D+IL 
Sbjct: 12  SLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILR 71

Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIK 135
           ++  +++G+   + + +L+  G PV + LI+
Sbjct: 72  VDDVNVQGMAQSDVVEVLRNAGNPVRLLLIR 102

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 87.0 bits (216), Expect = 6e-21
 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFG--DQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
            VE+   KD + LG S+ G +D         + VK +  G  A  +G+++  D+IL +++
Sbjct: 15  SVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDD 74

Query: 186 VPVTEMSRIEAWSLLKK 202
           V V  M++ +   +L+ 
Sbjct: 75  VNVQGMAQSDVVEVLRN 91

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 89.8 bits (223), Expect = 9e-22
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 5/89 (5%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
               E   +V+HR      +G  + GG D E   I +  +++G PAD  G L+KGD+ILS
Sbjct: 10  DIPREPRRIVIHRG--STGLGFNIVGGEDGEG--IFISFILAGGPADLSGELRKGDQILS 65

Query: 106 INGKSMKGLTHKESLAILKRGPPVEITLI 134
           +NG  ++  +H+++   LK      +T+I
Sbjct: 66  VNGVDLRNASHEQAAIALKNAGQ-TVTII 93

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 80.2 bits (198), Expect = 2e-18
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
             P  I + +   GLGF++ GG+D       + +  I  GG A+ +G+L+ GD+IL++N 
Sbjct: 13  REPRRIVIHRGSTGLGFNIVGGEDGE----GIFISFILAGGPADLSGELRKGDQILSVNG 68

Query: 186 VPVTEMSRIEAWSLLKK 202
           V +   S  +A   LK 
Sbjct: 69  VDLRNASHEQAAIALKN 85

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 89.3 bits (222), Expect = 9e-22
 Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 2/76 (2%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           +EI LIK   GLGFS+ GG  +    GD  + V KI  GG A K+G+L+ GD++L +N+V
Sbjct: 5   MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSV 64

Query: 187 PVTEMSRIEAWSLLKK 202
            + E++  EA + LK 
Sbjct: 65  SLEEVTHEEAVTALKN 80

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 87.0 bits (216), Expect = 5e-21
 Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 7/95 (7%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKE----ITVHKVISGTPADRDGRLQKGDRILS 105
           ++  + L +      +G ++AGG   +       I V K+I G  A +DG+LQ GD++L+
Sbjct: 3   KIMEIKLIKG--PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLA 60

Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
           +N  S++ +TH+E++  LK     V + + K  + 
Sbjct: 61  VNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSM 95

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 88.9 bits (221), Expect = 1e-21
 Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 4/89 (4%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
            +   V + +       G ++ GG +Y+  ++ V ++    PA R+GR++ GD+I+ ING
Sbjct: 10  FDYFTVDMEKG--AKGFGFSIRGGREYKM-DLYVLRLAEDGPAIRNGRMRVGDQIIEING 66

Query: 109 KSMKGLTHKESLAILKR-GPPVEITLIKD 136
           +S + +TH  ++ ++K  G  V + L + 
Sbjct: 67  ESTRDMTHARAIELIKSGGRRVRLLLKRG 95

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 87.8 bits (218), Expect = 3e-21
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
             + + K   G GFS+ GG++       L V ++   G A +NG+++ GD+I+ IN    
Sbjct: 13  FTVDMEKGAKGFGFSIRGGREYK---MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGEST 69

Query: 189 TEMSRIEAWSLLKK 202
            +M+   A  L+K 
Sbjct: 70  RDMTHARAIELIKS 83

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 89.4 bits (222), Expect = 1e-21
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
               EI L +  +GLGF++ GG D  +   D  + V +I   G A  +G+L+ GD+IL++
Sbjct: 16  VTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 75

Query: 184 NNVPVTEMSRIEAWSLLKK 202
           N   +  +   +A  L + 
Sbjct: 76  NGQDLKNLLHQDAVDLFRN 94

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 87.1 bits (216), Expect = 7e-21
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 7/92 (7%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKE----ITVHKVISGTPADRDGRLQKGDRILS 105
               + L R    + +G  + GG+D +       I V ++     A  DGRLQ+GD+ILS
Sbjct: 17  TEEEINLTRG--PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILS 74

Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
           +NG+ +K L H++++ + +  G  V + +   
Sbjct: 75  VNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHR 106

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 89.4 bits (222), Expect = 1e-21
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 8/97 (8%)

Query: 47  GTSEVSVVVLHRDLPGNSVGITLAGGSDYE------SKEITVHKVISGTPADRDGRLQKG 100
           G+ + S VV+HR       G  +    +        +    + ++I G+PADR  +L+ G
Sbjct: 7   GSLQTSDVVIHRK-ENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVG 65

Query: 101 DRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
           DRIL++NG+S+  + H + + ++K  G  V + +I  
Sbjct: 66  DRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQ 102

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 74.4 bits (183), Expect = 2e-16
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 128 PVEITLIK-DGAGLGFSLEGGKDSPFG----DQPLTVKKIFTGGCAEKNGQLKAGDEILT 182
             ++ + + +  G GF +    + P        P  + +I  G  A++  +LK GD IL 
Sbjct: 11  TSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILA 70

Query: 183 INNVPVTEMSRIEAWSLLKK 202
           +N   +  M   +   L+K 
Sbjct: 71  VNGQSIINMPHADIVKLIKD 90

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 88.5 bits (220), Expect = 1e-21
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
             EI L +  +GLGF++ GG D  +   D  + V +I   G A  +G+L+ GD+IL++N 
Sbjct: 8   EEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNG 67

Query: 186 VPVTEMSRIEAWSLLKK 202
             +  +   +A  L + 
Sbjct: 68  QDLKNLLHQDAVDLFRN 84

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 87.0 bits (216), Expect = 5e-21
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 7/92 (7%)

Query: 47  GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE----ITVHKVISGTPADRDGRLQKGDR 102
                  + L R    + +G  + GG+D +       I V ++     A  DGRLQ+GD+
Sbjct: 4   YLVTEEEINLTRG--PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDK 61

Query: 103 ILSINGKSMKGLTHKESLAILKR-GPPVEITL 133
           ILS+NG+ +K L H++++ + +  G  V + +
Sbjct: 62  ILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 93

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 89.0 bits (221), Expect = 1e-21
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 8/99 (8%)

Query: 47  GTSEVSVVVLHRDLPGNSVGITLAGGSD-----YESKEITVHKVISGTPADRDGRLQKGD 101
           G  E+  V L +D     +GI++ G         E   I V  V  G  A RDGR+Q  D
Sbjct: 1   GHMELFPVELEKD--SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVND 58

Query: 102 RILSINGKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
            ++ ++G S+ G+T   + ++L+     V   + ++  G
Sbjct: 59  LLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPG 97

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 81.3 bits (201), Expect = 7e-19
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 129 VEITLIKDGAGLGFSLEGGK---DSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
             + L KD  GLG S+ G     D       + VK +  GG A ++G+++  D ++ ++ 
Sbjct: 6   FPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDG 65

Query: 186 VPVTEMSRIEAWSLLKK 202
             +  +++  A S+L+ 
Sbjct: 66  TSLVGVTQSFAASVLRN 82

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 88.6 bits (220), Expect = 2e-21
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 14/107 (13%)

Query: 38  GGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE-------ITVHKVISGTP 90
           G  P    P   ++  V L ++   NS+GI++    D            I V  VI    
Sbjct: 1   GSSP----PKPGDIFEVELAKN--DNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGA 54

Query: 91  ADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
           A+ DGR+ KGDR+L++NG S++G THK+++  L+  G  V + L K 
Sbjct: 55  AESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 101

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 80.1 bits (198), Expect = 2e-18
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 126 GPPVEITLIKDGAGLGFSL-----EGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEI 180
           G   E+ L K+   LG S+     +GG ++      + VK +   G AE +G++  GD +
Sbjct: 8   GDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRV 67

Query: 181 LTINNVPVTEMSRIEAWSLLKK 202
           L +N V +   +  +A   L+ 
Sbjct: 68  LAVNGVSLEGATHKQAVETLRN 89

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 87.9 bits (218), Expect = 4e-21
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
           +G  +  TL K   G GF++ GG +    D+ L VK +   G A ++G+++ GD I+ IN
Sbjct: 17  KGTFLSTTLKKSNMGFGFTIIGGDEP---DEFLQVKSVIPDGPAAQDGKMETGDVIVYIN 73

Query: 185 NVPVTEMSRIEAWSLLKKLNDGTI 208
            V V   +  +   L + +  G  
Sbjct: 74  EVCVLGHTHADVVKLFQSVPIGQS 97

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 85.5 bits (212), Expect = 3e-20
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
                 L +       G T+ GG +   + + V  VI   PA +DG+++ GD I+ IN  
Sbjct: 19  TFLSTTLKKS--NMGFGFTIIGGDE-PDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEV 75

Query: 110 SMKGLTHKESLAILKR---GPPVEITLIKD 136
            + G TH + + + +    G  V + L + 
Sbjct: 76  CVLGHTHADVVKLFQSVPIGQSVNLVLCRG 105

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 88.3 bits (219), Expect = 4e-21
 Identities = 23/92 (25%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 37  EGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE---ITVHKVISGTPADR 93
           E  C +L +  + ++++ +   D     +G++L G    E+     I +  +I G  A +
Sbjct: 11  EPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFK 70

Query: 94  DGRLQKGDRILSINGKSMKGLTHKESLAILKR 125
           DGRL+  D+++++NG+++ G ++ E++  L+R
Sbjct: 71  DGRLRMNDQLIAVNGETLLGKSNHEAMETLRR 102

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 85.6 bits (212), Expect = 4e-20
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 128 PVEITLIKDG-AGLGFSLEGGKDSPFG-DQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
            +EI L   G AGLG SL+G K    G D  + +K I  GG A K+G+L+  D+++ +N 
Sbjct: 26  TLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNG 85

Query: 186 VPVTEMSRIEAWSLLKK 202
             +   S  EA   L++
Sbjct: 86  ETLLGKSNHEAMETLRR 102

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 87.0 bits (216), Expect = 5e-21
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
            G+  +  V + +  P   +G ++ GGS++    I V KV  G+ A+R G L  GD+I  
Sbjct: 6   SGSDIIHSVRVEKS-PAGRLGFSVRGGSEH-GLGIFVSKVEEGSSAERAG-LCVGDKITE 62

Query: 106 INGKSMKGLTHKESLAILKRGPPVEITLIKDGAG 139
           +NG S++  T   ++ +L     + + + + G+G
Sbjct: 63  VNGLSLESTTMGSAVKVLTSSSRLHMMVRRMGSG 96

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 73.5 bits (181), Expect = 3e-16
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 126 GPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
                + + K     LGFS+ GG +       + V K+  G  AE+ G L  GD+I  +N
Sbjct: 9   DIIHSVRVEKSPAGRLGFSVRGGSEH---GLGIFVSKVEEGSSAERAG-LCVGDKITEVN 64

Query: 185 NVPVTEMSRIEAWSLLKK 202
            + +   +   A  +L  
Sbjct: 65  GLSLESTTMGSAVKVLTS 82

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 88.0 bits (218), Expect = 5e-21
 Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 3/110 (2%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
            V  V L +      +G  +          + +  +I G  A++ G +Q GD IL++N +
Sbjct: 8   NVISVRLFKR-KVGGLGFLVKERVSKPP--VIISDLIRGGAAEQSGLIQAGDIILAVNDR 64

Query: 110 SMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTV 159
            +  L++  +L +L+        ++      GF+            P T+
Sbjct: 65  PLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTI 114

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 81.8 bits (202), Expect = 7e-19
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 5/75 (6%)

Query: 129 VEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           + + L K    GLGF ++     P    P+ +  +  GG AE++G ++AGD IL +N+ P
Sbjct: 10  ISVRLFKRKVGGLGFLVKERVSKP----PVIISDLIRGGAAEQSGLIQAGDIILAVNDRP 65

Query: 188 VTEMSRIEAWSLLKK 202
           + ++S   A  +L+ 
Sbjct: 66  LVDLSYDSALEVLRG 80

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 87.4 bits (217), Expect = 5e-21
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKE--------ITVHKVISGTPADRDGRLQKGD 101
            +  + + +  PG  +GI++ GG+   +          I + KV     A RDGRL+ G 
Sbjct: 9   GLRELCIQKA-PGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGL 67

Query: 102 RILSINGKSMKGLTHKESLAILKR-GPPVEITLIK 135
           R+L +N +S+ GLTH E++ +L+  G  + + +  
Sbjct: 68  RLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCD 102

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 78.6 bits (194), Expect = 6e-18
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 7/80 (8%)

Query: 130 EITLIK-DGAGLGFSLEGGKDSPFG------DQPLTVKKIFTGGCAEKNGQLKAGDEILT 182
           E+ + K  G  LG S+ GG     G      D+ + + K+   G A ++G+L+ G  +L 
Sbjct: 12  ELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLE 71

Query: 183 INNVPVTEMSRIEAWSLLKK 202
           +N   +  ++  EA  LL+ 
Sbjct: 72  VNQQSLLGLTHGEAVQLLRS 91

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 87.0 bits (216), Expect = 6e-21
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKE----ITVHKVISGTPADRDGRLQKGDRILS 105
           +   +VL R    + +G ++AGG D         I + K+I G  A  DGRL   D +L 
Sbjct: 4   KYEEIVLERG--NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLR 61

Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
           +N   +  + H  ++  LK  GP V + + + 
Sbjct: 62  VNEVDVSEVVHSRAVEALKEAGPVVRLVVRRR 93

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 85.5 bits (212), Expect = 2e-20
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 130 EITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           EI L +  +GLGFS+ GG D+P    D  + + KI  GG A  +G+L   D +L +N V 
Sbjct: 7   EIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVD 66

Query: 188 VTEMSRIEAWSLLKK 202
           V+E+    A   LK+
Sbjct: 67  VSEVVHSRAVEALKE 81

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 87.5 bits (217), Expect = 7e-21
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 124 KRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
            +G  +   L K   G GF++ GG +    D+ L +K +   G A  +G+++ GD I+++
Sbjct: 15  LKGKFIHTKLRKSSRGFGFTVVGGDEP---DEFLQIKSLVLDGPAALDGKMETGDVIVSV 71

Query: 184 NNVPVTEMSRIEAWSLLKKLNDG 206
           N+  V   +  +   + + +  G
Sbjct: 72  NDTCVLGHTHAQVVKIFQSIPIG 94

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 85.6 bits (212), Expect = 3e-20
 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 6/94 (6%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
               +     L +   G   G T+ GG + +   + +  ++   PA  DG+++ GD I+S
Sbjct: 14  ELKGKFIHTKLRKSSRG--FGFTVVGGDEPDEF-LQIKSLVLDGPAALDGKMETGDVIVS 70

Query: 106 INGKSMKGLTHKESLAILKR---GPPVEITLIKD 136
           +N   + G TH + + I +    G  V++ L + 
Sbjct: 71  VNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRG 104

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 91.3 bits (226), Expect = 9e-21
 Identities = 35/200 (17%), Positives = 62/200 (31%), Gaps = 49/200 (24%)

Query: 25  QQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHK 84
            +    +  +      P L      +   V + +      +GI++ GG + +   I + K
Sbjct: 52  PEPAQLNGAAEPGAAPPQLPEALLLQRRRVTVRKA-DAGGLGISIKGGRENKMP-ILISK 109

Query: 85  VISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR------------------- 125
           +  G  AD+   L  GD ILS+NG+ +   TH E++  LK+                   
Sbjct: 110 IFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYF 169

Query: 126 --------------------------GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTV 159
                                     GP            L  +    + +P   +P  +
Sbjct: 170 KNSAGGTSVGWDSPPASPLQRQPSSPGPQPRNLSEAKHVSLKMAYVSRRCTPTDPEPRYL 229

Query: 160 KKIFTGGCAEKNGQLKAGDE 179
           +     G       L+A DE
Sbjct: 230 EICAADGQDA--VFLRAKDE 247

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 70.5 bits (172), Expect = 1e-13
 Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query: 128 PVEITLIKDGA-GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
              +T+ K  A GLG S++GG+++     P+ + KIF G  A++   L  GD IL++N  
Sbjct: 78  RRRVTVRKADAGGLGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVNGE 134

Query: 187 PVTEMSRIEAWSLLKK 202
            ++  +  EA   LKK
Sbjct: 135 DLSSATHDEAVQALKK 150

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 86.8 bits (215), Expect = 1e-20
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESK-EITVHKVISGTPADRDGRLQKGDRILSING 108
           E+  V L+R    + +G+T+   +D E    I + ++   + A +DGR+++GDRI+ ING
Sbjct: 19  ELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQING 78

Query: 109 KSMKGLTHKESLAILKRGPPVEITLIKD 136
             ++      +L   +      + + + 
Sbjct: 79  IEVQNREEAVALLTSEENKNFSLLIARP 106

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 71.8 bits (176), Expect = 2e-15
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 130 EITLIK--DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           E+ L +      LG ++    D    D  + + +I     A K+G+++ GD I+ IN + 
Sbjct: 22  EVDLYRMNSQDKLGLTVCYRTDDE-DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIE 80

Query: 188 VTEMSRIEAWSLLKKLNDGTIQ 209
           V      EA +LL    +    
Sbjct: 81  VQNRE--EAVALLTSEENKNFS 100

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 86.4 bits (214), Expect = 1e-20
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 51  VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKS 110
           V  V L +      +G  +          + +  +I G  A++ G +Q GD IL++N + 
Sbjct: 2   VISVRLFKR-KVGGLGFLVKERVS--KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRP 58

Query: 111 MKGLTHKESLAILKR-GPPVEITLI 134
           +  L++  +L +L+       + LI
Sbjct: 59  LVDLSYDSALEVLRGIASETHVVLI 83

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 83.7 bits (207), Expect = 1e-19
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 5/75 (6%)

Query: 129 VEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           + + L K    GLGF ++     P    P+ +  +  GG AE++G ++AGD IL +N+ P
Sbjct: 3   ISVRLFKRKVGGLGFLVKERVSKP----PVIISDLIRGGAAEQSGLIQAGDIILAVNDRP 58

Query: 188 VTEMSRIEAWSLLKK 202
           + ++S   A  +L+ 
Sbjct: 59  LVDLSYDSALEVLRG 73

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 85.9 bits (213), Expect = 1e-20
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILSIN 107
           E+  V L +    N +G+++         +  I V  V+ G  AD DGRL  GD++LS++
Sbjct: 11  EIITVTLKK---QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVD 67

Query: 108 GKSMKGLTHKESLAILKR-GPPVEITLIKDGA 138
           G+S+ GL+ + +  ++ R    V + + K GA
Sbjct: 68  GRSLVGLSQERAAELMTRTSSVVTLEVAKQGA 99

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 82.4 bits (204), Expect = 3e-19
 Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
           + +TL K   G+G S+   K +      + VK +  GG A+ +G+L AGD++L+++   +
Sbjct: 13  ITVTLKKQN-GMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSL 71

Query: 189 TEMSRIEAWSLLKK 202
             +S+  A  L+ +
Sbjct: 72  VGLSQERAAELMTR 85

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 85.1 bits (211), Expect = 3e-20
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 5/77 (6%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
           V + L + GA  GF+L+GG +     +PLTV KI  GG A  + +++ GDE++ IN  P 
Sbjct: 13  VPVQL-QGGAPWGFTLKGGLEH---CEPLTVSKIEDGGKAALSQKMRTGDELVNINGTP- 67

Query: 189 TEMSRIEAWSLLKKLND 205
              SR EA  L+K    
Sbjct: 68  LYGSRQEALILIKGSFR 84

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 74.7 bits (184), Expect = 9e-17
 Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 6/94 (6%)

Query: 47  GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
           G+ +   V L     G   G TL GG ++  + +TV K+  G  A    +++ GD +++I
Sbjct: 8   GSFQYVPVQLQG---GAPWGFTLKGGLEH-CEPLTVSKIEDGGKAALSQKMRTGDELVNI 63

Query: 107 NGKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
           NG  + G + +E+L ++K     +++ + +  +G
Sbjct: 64  NGTPLYG-SRQEALILIKGSFRILKLIVRRRNSG 96

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 85.1 bits (211), Expect = 3e-20
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 8/93 (8%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSD-----YESKEITVHKVISGTPADRDGRLQKGDRIL 104
           E+  V L +D   + +GI++ G         E   I V  V  G  A RDGR+Q  D+I+
Sbjct: 9   ELFPVELEKD--EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIV 66

Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
            ++G S+ G+T   +  +L+     V   + ++
Sbjct: 67  EVDGISLVGVTQNFAATVLRNTKGNVRFVIGRE 99

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 79.3 bits (196), Expect = 3e-18
 Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 129 VEITLIKDGAGLGFSLEG---GKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
             + L KD  GLG S+ G   G D+      + VK +  GG A+++G+++  D+I+ ++ 
Sbjct: 11  FPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDG 70

Query: 186 VPVTEMSRIEAWSLLKK 202
           + +  +++  A ++L+ 
Sbjct: 71  ISLVGVTQNFAATVLRN 87

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 85.1 bits (211), Expect = 3e-20
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
           E   V L +   G  +G++L+          T+  +I G   + D +LQ+GD I   NG 
Sbjct: 2   EKFNVDLMKK-AGKELGLSLSPNE----IGCTIADLIQGQYPEIDSKLQRGDIITKFNGD 56

Query: 110 SMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
           +++GL  +   A+ K     V + + +   G
Sbjct: 57  ALEGLPFQVCYALFKGANGKVSMEVTRPKPG 87

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 74.0 bits (182), Expect = 2e-16
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 7/78 (8%)

Query: 129 VEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
             + L+K  G  LG SL   +          +  +  G   E + +L+ GD I   N   
Sbjct: 4   FNVDLMKKAGKELGLSLSPNEIGCT------IADLIQGQYPEIDSKLQRGDIITKFNGDA 57

Query: 188 VTEMSRIEAWSLLKKLND 205
           +  +     ++L K  N 
Sbjct: 58  LEGLPFQVCYALFKGANG 75

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 84.7 bits (210), Expect = 3e-20
 Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
           + EV +V L R      +G ++ GGS++    I V  V  G+ A+++G L+ GD+IL +N
Sbjct: 6   SGEVRLVSLRRAKAHEGLGFSIRGGSEH-GVGIYVSLVEPGSLAEKEG-LRVGDQILRVN 63

Query: 108 GKSMKGLTHKESLAILKRGPPVEITLIKDG 137
            KS+  +TH E++  LK    + +++   G
Sbjct: 64  DKSLARVTHAEAVKALKGSKKLVLSVYSAG 93

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 75.8 bits (187), Expect = 4e-17
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
           V +   K   GLGFS+ GG +   G   + V  +  G  AEK G L+ GD+IL +N+  +
Sbjct: 12  VSLRRAKAHEGLGFSIRGGSEHGVG---IYVSLVEPGSLAEKEG-LRVGDQILRVNDKSL 67

Query: 189 TEMSRIEAWSLLKK 202
             ++  EA   LK 
Sbjct: 68  ARVTHAEAVKALKG 81

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 84.8 bits (210), Expect = 4e-20
 Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 39  GCPSLLIPGTSEVSVVVLHRD-----LPGNSVGITLAGGSDYESKE----ITVHKVISGT 89
           G            + + + RD     + GN +GI + GG +           + K++ G 
Sbjct: 1   GSSGSSGHYIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGG 60

Query: 90  PADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
            A++ G+L +G ++L  NG  +   T++E  +I+ +     EI +  D
Sbjct: 61  SAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLD 108

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 84.0 bits (208), Expect = 1e-19
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 9/85 (10%)

Query: 127 PPVEITLIKD-------GAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAG 177
           P   I + +D       G GLG  + GGK+ P   G+    + KI  GG AE+ G+L  G
Sbjct: 12  PHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEG 71

Query: 178 DEILTINNVPVTEMSRIEAWSLLKK 202
            ++L  N +P+T  +  E  S++ +
Sbjct: 72  MQVLEWNGIPLTSKTYEEVQSIISQ 96

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 83.9 bits (208), Expect = 7e-20
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 5/89 (5%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
               E   +V+HR      +G  + GG   E   I +  +++G PAD  G L+KGD+ILS
Sbjct: 7   DIPREPRRIVIHRG--STGLGFNIVGGEXGEG--IFISFILAGGPADLSGELRKGDQILS 62

Query: 106 INGKSMKGLTHKESLAILKRGPPVEITLI 134
           +NG  ++  +H+++   LK      +T+I
Sbjct: 63  VNGVDLRNASHEQAAIALKNAGQ-TVTII 90

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 77.3 bits (191), Expect = 1e-17
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
             P  I + +   GLGF++ GG+        + +  I  GG A+ +G+L+ GD+IL++N 
Sbjct: 10  REPRRIVIHRGSTGLGFNIVGGEXGE----GIFISFILAGGPADLSGELRKGDQILSVNG 65

Query: 186 VPVTEMSRIEAWSLLKK 202
           V +   S  +A   LK 
Sbjct: 66  VDLRNASHEQAAIALKN 82

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 83.3 bits (206), Expect = 9e-20
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 50  EVSVVVLHRDLPGNSVGITL-AGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
               V L +   G  +G+ L   G         +  ++ G PA+R G L  GDR+ +ING
Sbjct: 9   NCREVHLEKR-RGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAING 67

Query: 109 KSMKGLTHKESLAILKR-GPPVEITL 133
            S+ GL      A ++       +TL
Sbjct: 68  TSLVGLPLAACQAAVRETKSQTSVTL 93

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 70.2 bits (172), Expect = 4e-15
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 128 PVEITLIKD-GAGLGFSL-EGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
             E+ L K  G GLG +L E G  S        +  +  GG AE++G L  GD +  IN 
Sbjct: 10  CREVHLEKRRGEGLGVALVESGWGSLLP--TAVIANLLHGGPAERSGALSIGDRLTAING 67

Query: 186 VPVTEMSRIEAWSLLKKLNDGT 207
             +  +      + +++    T
Sbjct: 68  TSLVGLPLAACQAAVRETKSQT 89

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 82.3 bits (204), Expect = 1e-19
 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 54  VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
           V L +       G+ LA         I V ++   + A RDG +Q+GD +L ING   + 
Sbjct: 4   VTLVKSRKNEEYGLRLASH-------IFVKEISQDSLAARDGNIQEGDVVLKINGTVTEN 56

Query: 114 LTHKESLAILKR-GPPVEITLIKD 136
           ++  ++  +++R    +++ + +D
Sbjct: 57  MSLTDAKTLIERSKGKLKMVVQRD 80

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
           G  V +   +     G  L            + VK+I     A ++G ++ GD +L IN 
Sbjct: 1   GSKVTLVKSRKNEEYGLRLASH---------IFVKEISQDSLAARDGNIQEGDVVLKING 51

Query: 186 VPVTEMSRIEAWSLLKK 202
                MS  +A +L+++
Sbjct: 52  TVTENMSLTDAKTLIER 68

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 83.3 bits (206), Expect = 1e-19
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 9/90 (10%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKE-----ITVHKVISGTPADRDGRLQKGDRIL 104
           E   V L +D      GI ++GG D    E     I +  V+ G PAD  G LQ+ DR++
Sbjct: 14  EQYTVTLQKD-SKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVV 70

Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITL 133
            +NG  M+ + H  ++  L++ G    I +
Sbjct: 71  MVNGTPMEDVLHSFAVQQLRKSGKIAAIVV 100

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 75.9 bits (187), Expect = 5e-17
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 128 PVEITLIKD-GAGLGFSLEGGKDSP---FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
              +TL KD   G G ++ GG+D+P    G+  + +  +  GG A+  G L+  D ++ +
Sbjct: 15  QYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMV 72

Query: 184 NNVPVTEMSRIEAWSLLKK 202
           N  P+ ++    A   L+K
Sbjct: 73  NGTPMEDVLHSFAVQQLRK 91

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 82.7 bits (205), Expect = 1e-19
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
           E   V L +   G  +G++L+          T+  +I G   + D +LQ+GD I   NG 
Sbjct: 8   EKFNVDLMKK-AGKELGLSLSPNEI----GCTIADLIQGQYPEIDSKLQRGDIITKFNGD 62

Query: 110 SMKGLTHKESLAILKR-GPPVEITLIK 135
           +++GL  + S A+ K     V + + +
Sbjct: 63  ALEGLPFQVSYALFKGANGKVSMEVTR 89

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 71.2 bits (175), Expect = 2e-15
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 129 VEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
             + L+K  G  LG SL   +          +  +  G   E + +L+ GD I   N   
Sbjct: 10  FNVDLMKKAGKELGLSLSPNEIGCT------IADLIQGQYPEIDSKLQRGDIITKFNGDA 63

Query: 188 VTEMSRIEAWSLLKKLND 205
           +  +    +++L K  N 
Sbjct: 64  LEGLPFQVSYALFKGANG 81

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 83.2 bits (206), Expect = 1e-19
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 9/90 (10%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKE-----ITVHKVISGTPADRDGRLQKGDRIL 104
           E   V LHR  PG   GI ++GG D    +     I +  V+ G PA+  G+LQ+ DR+ 
Sbjct: 7   EQHTVTLHRA-PGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVA 63

Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITL 133
            +NG SM  + H  ++  L++ G   +IT+
Sbjct: 64  MVNGVSMDNVEHAFAVQQLRKSGKNAKITI 93

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 75.1 bits (185), Expect = 1e-16
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 128 PVEITLIKD-GAGLGFSLEGGKDSPF---GDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
              +TL +  G G G ++ GG+D+P    G+  + +  +  GG AE  GQL+  D +  +
Sbjct: 8   QHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVAMV 65

Query: 184 NNVPVTEMSRIEAWSLLKK 202
           N V +  +    A   L+K
Sbjct: 66  NGVSMDNVEHAFAVQQLRK 84

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 82.8 bits (205), Expect = 2e-19
 Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 3/81 (3%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
           +V L +  PG  +G  + GG   +   I + KVI  + A R G LQ+GD++L++N    +
Sbjct: 18  IVTLKKP-PGAQLGFNIRGGKASQLG-IFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQ 74

Query: 113 GLTHKESLAILKRGPPVEITL 133
            + H +++ ILK    + + +
Sbjct: 75  DIEHSKAVEILKTAREISMRV 95

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 73.6 bits (181), Expect = 3e-16
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)

Query: 123 LKRGPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEIL 181
           L +  P  +TL K  GA LGF++ GGK S      + + K+     A + G L+ GD++L
Sbjct: 11  LTQFLPRIVTLKKPPGAQLGFNIRGGKAS---QLGIFISKVIPDSDAHRAG-LQEGDQVL 66

Query: 182 TINNVPVTEMSRIEAWSLLKKLNDGTI 208
            +N+V   ++   +A  +LK   + ++
Sbjct: 67  AVNDVDFQDIEHSKAVEILKTAREISM 93

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 84.6 bits (209), Expect = 2e-19
 Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 8/133 (6%)

Query: 10  TSIASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITL 69
           T+     S  S ++  +  ++ +                 E+  V L +D     +GI++
Sbjct: 40  TAPIQVFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKD--SEGLGISI 97

Query: 70  AGGSDYESKE-----ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
            G             I V  V  G  A RDGR+Q  D ++ ++G S+ G+T   + ++L+
Sbjct: 98  IGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLR 157

Query: 125 R-GPPVEITLIKD 136
                V   + ++
Sbjct: 158 NTKGRVRFMIGRE 170

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 78.1 bits (192), Expect = 4e-17
 Identities = 33/180 (18%), Positives = 68/180 (37%), Gaps = 26/180 (14%)

Query: 26  QLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKV 85
            + +E  +   E     + IPG SE       R +  ++  I +                
Sbjct: 2   HMDEEDGEPPYEPESGCVEIPGLSEEEDPAPSRKIHFSTAPIQVFS-------------- 47

Query: 86  ISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLE 145
            + +  D D R +  D + +     ++    +  L          + L KD  GLG S+ 
Sbjct: 48  -TYSNEDYDRRNEDVDPMAASAEYELEKRVERLEL--------FPVELEKDSEGLGISII 98

Query: 146 GGK---DSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK 202
           G     D       + VK +  GG A ++G+++  D ++ ++   +  +++  A S+L+ 
Sbjct: 99  GMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN 158

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 82.1 bits (203), Expect = 2e-19
 Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 8/92 (8%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
           ++ + V L +       G+ LA         I V ++   + A RDG +Q+GD +L ING
Sbjct: 1   AKPTKVTLVKSAKNEEYGLRLASH-------IFVKEISQDSLAARDGNIQEGDVVLKING 53

Query: 109 KSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
              + ++  ++  +++R    +++ + +D   
Sbjct: 54  TVTENMSLTDAKTLIERSKGKLKMVVQRDERA 85

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 67.8 bits (166), Expect = 2e-14
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 11/79 (13%)

Query: 126 GPPVEITLIK--DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
             P ++TL+K       G  L            + VK+I     A ++G ++ GD +L I
Sbjct: 1   AKPTKVTLVKSAKNEEYGLRLASH---------IFVKEISQDSLAARDGNIQEGDVVLKI 51

Query: 184 NNVPVTEMSRIEAWSLLKK 202
           N      MS  +A +L+++
Sbjct: 52  NGTVTENMSLTDAKTLIER 70

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 82.6 bits (204), Expect = 4e-19
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 3/97 (3%)

Query: 41  PSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKG 100
            +L +    +   V L     G S+G+T+ GG++Y    I +  V  G+ A+  G L+ G
Sbjct: 11  STLHLLQGGDEKKVNLVLG-DGRSLGLTIRGGAEY-GLGIYITGVDPGSEAEGSG-LKVG 67

Query: 101 DRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDG 137
           D+IL +NG+S   + H E++ +LK    + +T+   G
Sbjct: 68  DQILEVNGRSFLNILHDEAVRLLKSSRHLILTVKDVG 104

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 78.3 bits (193), Expect = 1e-17
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 5/102 (4%)

Query: 108 GKSMKGLTHKESLAILKRGPPVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGG 166
           G S      + +L +L+ G   ++ L+  DG  LG ++ GG +       + +  +  G 
Sbjct: 1   GSSGSSGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEY---GLGIYITGVDPGS 57

Query: 167 CAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI 208
            AE +G LK GD+IL +N      +   EA  LLK      +
Sbjct: 58  EAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLIL 98

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 81.2 bits (201), Expect = 4e-19
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
           G P  +TL    +  GF L GG+D      PLT+ ++  G  A     L  GD I  IN 
Sbjct: 7   GMPHSVTLRG-PSPWGFRLVGGRDF---SAPLTISRVHAGSKAALAA-LCPGDLIQAING 61

Query: 186 VPVTEMSRIEAWSLLKKLND 205
                M+ +EA + +K  +D
Sbjct: 62  ESTELMTHLEAQNRIKGCHD 81

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 72.3 bits (178), Expect = 7e-16
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
            V L    P    G  L GG D+ +  +T+ +V +G+ A     L  GD I +ING+S +
Sbjct: 11  SVTLRGPSPW---GFRLVGGRDFSAP-LTISRVHAGSKAALAA-LCPGDLIQAINGESTE 65

Query: 113 GLTHKESLAILKR-GPPVEITLIKDGA 138
            +TH E+   +K     + +++    +
Sbjct: 66  LMTHLEAQNRIKGCHDHLTLSVSSGPS 92

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 80.4 bits (199), Expect = 7e-19
 Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 8/87 (9%)

Query: 54  VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
           V+L +       G+ L          I V ++     A +DG L +GD IL ING   + 
Sbjct: 4   VLLMKSRANEEYGLRLGSQ-------IFVKEMTRTGLATKDGNLHEGDIILKINGTVTEN 56

Query: 114 LTHKESLAILKR-GPPVEITLIKDGAG 139
           ++  ++  ++++    +++ +++D   
Sbjct: 57  MSLTDARKLIEKSRGKLQLVVLRDLEH 83

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 72.0 bits (177), Expect = 7e-16
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
           + + L+K  A   + L  G         + VK++   G A K+G L  GD IL IN    
Sbjct: 2   IGVLLMKSRANEEYGLRLG-------SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVT 54

Query: 189 TEMSRIEAWSLLKK 202
             MS  +A  L++K
Sbjct: 55  ENMSLTDARKLIEK 68

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 80.1 bits (198), Expect = 1e-18
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
           P   E+  V L++D      G ++A G     K + V  +    P D  G L+  DR+L 
Sbjct: 2   PTPVELHKVTLYKDSGMEDFGFSVADGLL--EKGVYVKNIRPAGPGDLGG-LKPYDRLLQ 58

Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
           +N    +       + ++   G  +++ + ++
Sbjct: 59  VNHVRTRDFDCCLVVPLIAESGNKLDLVISRN 90

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 60.8 bits (148), Expect = 6e-12
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 128 PVEITLIKD--GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
             ++TL KD      GFS+  G         + VK I   G  +  G LK  D +L +N+
Sbjct: 7   LHKVTLYKDSGMEDFGFSVADGLLEK----GVYVKNIRPAGPGDLGG-LKPYDRLLQVNH 61

Query: 186 VPVTEMSRIEAWSLLKK 202
           V   +        L+ +
Sbjct: 62  VRTRDFDCCLVVPLIAE 78

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 81.0 bits (200), Expect = 1e-18
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 9/94 (9%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKE--------ITVHKVISGTPADRDGRLQKGD 101
               V L +      +G  +  GS              I + +++ G  A   G L   D
Sbjct: 29  THRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVND 88

Query: 102 RILSINGKSMKGLTHKESLAILKR-GPPVEITLI 134
            +L +NG  + G +  +   ++      + IT+ 
Sbjct: 89  EVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVR 122

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 71.8 bits (176), Expect = 2e-15
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFG------DQPLTVKKIFTGGCAEKNGQLKAGDEILT 182
           V +        LGF +  G               + + ++  GG A+  G L   DE+L 
Sbjct: 33  VRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLE 92

Query: 183 INNVPVTEMSRIEAWSLLKK 202
           +N + V+  S  +   ++  
Sbjct: 93  VNGIEVSGKSLDQVTDMMIA 112

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 83.1 bits (205), Expect = 1e-18
 Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 6/129 (4%)

Query: 12  IASSTSLISQQELQQLIDESNQSL---DEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGIT 68
           +     +I++     L D     +    +     L    + ++  V L R      +G++
Sbjct: 43  VGDLKLVINEPSRLPLFDAIRPLIPLKHQVEYDQLTPRRSRKLKEVRLDRL-HPEGLGLS 101

Query: 69  LAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPP 128
           + GG ++    + +  +I G  AD  G LQ GD I+ ING S+   TH+E + +++    
Sbjct: 102 VRGGLEFGCG-LFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRTEKT 159

Query: 129 VEITLIKDG 137
           V I +   G
Sbjct: 160 VSIKVRHIG 168

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 74.2 bits (182), Expect = 1e-15
 Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 18/145 (12%)

Query: 71  GGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKS-------------MKGLTHK 117
              + ++++  ++ V+       D  +  GD  L IN  S             +K     
Sbjct: 15  FLIENDAEKDYLYDVLRMYHQTMDVAVLVGDLKLVINEPSRLPLFDAIRPLIPLKHQVEY 74

Query: 118 ESLAILKRGPPVEITLIKDGA-GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKA 176
           + L   +     E+ L +    GLG S+ GG +       L +  +  GG A+  G L+ 
Sbjct: 75  DQLTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEF---GCGLFISHLIKGGQADSVG-LQV 130

Query: 177 GDEILTINNVPVTEMSRIEAWSLLK 201
           GDEI+ IN   ++  +  E  +L++
Sbjct: 131 GDEIVRINGYSISSCTHEEVINLIR 155

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 79.3 bits (196), Expect = 2e-18
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 5/74 (6%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
            ++ L +  A  GF L+GGKD    + PL++ ++  GG A + G +  GD +L+I+    
Sbjct: 5   FKVVL-EGPAPWGFRLQGGKDF---NVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENA 59

Query: 189 TEMSRIEAWSLLKK 202
             ++ IEA + ++ 
Sbjct: 60  GSLTHIEAQNKIRA 73

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 72.0 bits (177), Expect = 6e-16
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 6/94 (6%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
           + +   VVL    P    G  L GG D+    +++ ++  G  A + G +  GD +LSI+
Sbjct: 1   SMDSFKVVLEGPAP---WGFRLQGGKDFNVP-LSISRLTPGGKAAQAG-VAVGDWVLSID 55

Query: 108 GKSMKGLTHKESLAILKR-GPPVEITLIKDGAGL 140
           G++   LTH E+   ++  G  + + L +    L
Sbjct: 56  GENAGSLTHIEAQNKIRACGERLSLGLSRAITSL 89

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 79.6 bits (197), Expect = 2e-18
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 9/95 (9%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKE-----ITVHKVISGTPADRDGRLQKGDR 102
           + E   + + R      +GI++AGG      +     I + +V    PA R G ++ GD+
Sbjct: 1   SMEELTLTILRQ--TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDK 57

Query: 103 ILSINGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
           +L +NG +++G  H E++  L+  G  V++ + ++
Sbjct: 58  LLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE 92

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 76.6 bits (189), Expect = 2e-17
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSP---FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
            + +T+++   GLG S+ GGK S      D+ + + ++   G A + G ++ GD++L +N
Sbjct: 4   ELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVN 62

Query: 185 NVPVTEMSRIEAWSLLKK 202
            V +      EA   L+ 
Sbjct: 63  GVALQGAEHHEAVEALRG 80

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 79.8 bits (197), Expect = 3e-18
 Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
              ++   V +        +G +++ G   +   I +  V  G+ +   G L+ GD+I+ 
Sbjct: 11  NRENKEKKVFISLV-GSRGLGCSISSGPIQKPG-IFISHVKPGSLSAEVG-LEIGDQIVE 67

Query: 106 INGKSMKGLTHKESLAILKRGPPVEITLIKDG 137
           +NG     L HKE++ +LK    + I+++   
Sbjct: 68  VNGVDFSNLDHKEAVNVLKSSRSLTISIVAAA 99

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 67.1 bits (164), Expect = 7e-14
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 124 KRGPPVEITLIKDGA-GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILT 182
           +     ++ +   G+ GLG S+  G         + +  +  G  + + G L+ GD+I+ 
Sbjct: 12  RENKEKKVFISLVGSRGLGCSISSGPIQ---KPGIFISHVKPGSLSAEVG-LEIGDQIVE 67

Query: 183 INNVPVTEMSRIEAWSLLKKLNDGTI 208
           +N V  + +   EA ++LK     TI
Sbjct: 68  VNGVDFSNLDHKEAVNVLKSSRSLTI 93

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 79.9 bits (197), Expect = 3e-18
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 12/102 (11%)

Query: 38  GGCPSLLIPGTS----EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADR 93
           GG  +L   G       + +V   +   G+SVG+ LAGG+D     I V  V+  +PA +
Sbjct: 13  GGTENLYFQGHMILRPSMKLVKFRK---GDSVGLRLAGGNDVG---IFVAGVLEDSPAAK 66

Query: 94  DGRLQKGDRILSINGKSMKGLTHKESLAILKRGPP-VEITLI 134
           +G L++GD+IL +N      +  +E++  L   P   E+T++
Sbjct: 67  EG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL 107

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 69.8 bits (171), Expect = 9e-15
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
            P +++   + G  +G  L GG D       + V  +     A K G L+ GD+IL +NN
Sbjct: 27  RPSMKLVKFRKGDSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNN 80

Query: 186 VPVTEMSRIEAWSLLKKLNDG 206
           V  T + R EA   L  L  G
Sbjct: 81  VDFTNIIREEAVLFLLDLPKG 101

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 78.5 bits (194), Expect = 3e-18
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
            + + +    A  GF + GG+D      P+ V K+   G A+    L+ GD I+ IN   
Sbjct: 3   ALTVDV-AGPAPWGFRITGGRDF---HTPIMVTKVAERGKAKDAD-LRPGDIIVAINGES 57

Query: 188 VTEMSRIEAWSLLKK 202
              M   EA S +++
Sbjct: 58  AEGMLHAEAQSKIRQ 72

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 70.0 bits (172), Expect = 3e-15
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 66  GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR 125
           G  + GG D+ +  I V KV     A     L+ GD I++ING+S +G+ H E+ + +++
Sbjct: 15  GFRITGGRDFHTP-IMVTKVAERGKAKD-ADLRPGDIIVAINGESAEGMLHAEAQSKIRQ 72

Query: 126 -GPPVEITLIKDGA 138
              P+ + L +  +
Sbjct: 73  SPSPLRLQLDRITS 86

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 79.4 bits (196), Expect = 3e-18
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 34  SLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADR 93
             DE    S+   G   V +V + +      +G T+    D     + + +++ G  A++
Sbjct: 9   ITDERVYESIGHYGGETVKIVRIEKA-RDIPLGATVRNEMD----SVIISRIVKGGAAEK 63

Query: 94  DGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLIK 135
            G L +GD +L ING  ++G    E   +L      +   LI 
Sbjct: 64  SGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIP 106

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 130 EITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
            + + K     LG ++    D       + + +I  GG AEK+G L  GDE+L IN + +
Sbjct: 28  IVRIEKARDIPLGATVRNEMD------SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEI 81

Query: 189 TEMSRIEAWSLLKKLND 205
                 E + LL  ++ 
Sbjct: 82  RGKDVNEVFDLLSDMHG 98

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 79.5 bits (196), Expect = 4e-18
 Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 20/141 (14%)

Query: 13  ASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGG 72
            SS S  S+ E +QL                      +V    L     G  +G+ +   
Sbjct: 1   GSSGSSGSKNEKEQLSKAKASVSSLN-----------KVIQTKLTVGNLG--LGLVVIQN 47

Query: 73  SDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK---RGPPV 129
             Y    + +  +I+   A  DG LQ GD ++S+   ++ G T +E L +L+    G  +
Sbjct: 48  GPY----LQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVL 103

Query: 130 EITLIKDGAGLGFSLEGGKDS 150
           +I   +    +    +    S
Sbjct: 104 QIKAYRGFLEIPQEWQDSGPS 124

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 78.0 bits (192), Expect = 2e-17
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 105 SINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFT 164
           S   K+ K    K   ++      ++  L     GLG  +            L +  +  
Sbjct: 5   SSGSKNEKEQLSKAKASVSSLNKVIQTKLTVGNLGLGLVVIQN------GPYLQISHLIN 58

Query: 165 GGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI 208
            G A  +G L+ GD ++++ +  V   +  E   LL+ +  GT+
Sbjct: 59  KGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTV 102

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 78.7 bits (194), Expect = 5e-18
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADR-DGRLQKGDRIL 104
                + ++ +  D      G  + GG D +   + V +V  GTPAD    RL +GD+++
Sbjct: 13  IPHDNLVLIRMKPD-ENGRFGFNVKGGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVV 70

Query: 105 SINGKSMKGLTHKESLAILKRGP 127
            ING+ +   TH + +  +K   
Sbjct: 71  LINGRDIAEHTHDQVVLFIKASC 93

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 73.3 bits (180), Expect = 4e-16
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 126 GPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEK-NGQLKAGDEILTI 183
              V I +  D     GF+++GG D      P+ V ++  G  A+    +L  GD+++ I
Sbjct: 16  DNLVLIRMKPDENGRFGFNVKGGYDQ---KMPVIVSRVAPGTPADLCVPRLNEGDQVVLI 72

Query: 184 NNVPVTEMSRIEAWSLLKK 202
           N   + E +  +    +K 
Sbjct: 73  NGRDIAEHTHDQVVLFIKA 91

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 77.8 bits (192), Expect = 6e-18
 Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 47  GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
           G+  V ++ L ++     +G T+      ++  I V +++ G  ADR G +  GD +  +
Sbjct: 1   GSDSVKIIRLVKN--REPLGATIKKDE--QTGAIIVARIMRGGAADRSGLIHVGDELREV 56

Query: 107 NGKSMKGLTHKESLAILKR-GPPVEITLI 134
           NG  ++    +E + IL +    +   +I
Sbjct: 57  NGIPVEDKRPEEIIQILAQSQGAITFKII 85

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 72.4 bits (178), Expect = 5e-16
 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
           I L+K+   LG +++  + +      + V +I  GG A+++G +  GDE+  +N +PV +
Sbjct: 8   IRLVKNREPLGATIKKDEQTG----AIIVARIMRGGAADRSGLIHVGDELREVNGIPVED 63

Query: 191 MSRIEAWSLLKKLND 205
               E   +L +   
Sbjct: 64  KRPEEIIQILAQSQG 78

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 78.2 bits (193), Expect = 7e-18
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
           G    ++L+   A  GF L+GGKD    + PLT+  +  GG A +   ++ GD +L+I+ 
Sbjct: 4   GSSGSVSLVG-PAPWGFRLQGGKDF---NMPLTISSLKDGGKASQAH-VRIGDVVLSIDG 58

Query: 186 VPVTEMSRIEAWSLLKK 202
           +    M+ +EA + +K 
Sbjct: 59  ISAQGMTHLEAQNKIKA 75

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 70.5 bits (173), Expect = 4e-15
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 66  GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR 125
           G  L GG D+ +  +T+  +  G  A +   ++ GD +LSI+G S +G+TH E+   +K 
Sbjct: 18  GFRLQGGKDF-NMPLTISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTHLEAQNKIKA 75

Query: 126 -GPPVEITLIKDGAG 139
               + +TL +  A 
Sbjct: 76  CTGSLNMTLQRASAA 90

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 78.2 bits (193), Expect = 9e-18
 Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYESKE-----ITVHKVISGTPADRDGRLQKGDRI 103
            E   + + R      +GI++AGG      +     I + +V    PA R G ++ GD++
Sbjct: 14  EEELTLTILRQ--TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKL 70

Query: 104 LSINGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
           L +NG +++G  H E++  L+  G  V++ + ++
Sbjct: 71  LEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE 104

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 75.8 bits (187), Expect = 5e-17
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSP---FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
            + +T+++   GLG S+ GGK S      D+ + + ++   G A + G ++ GD++L +N
Sbjct: 16  ELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVN 74

Query: 185 NVPVTEMSRIEAWSLLKK 202
            V +      EA   L+ 
Sbjct: 75  GVALQGAEHHEAVEALRG 92

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 77.8 bits (192), Expect = 1e-17
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
           G    + L    A  GF L GG D    +QPL + +I  G  A     L  GD IL I+ 
Sbjct: 4   GSSGNVVL-PGPAPWGFRLSGGIDF---NQPLVITRITPGSKAAAAN-LCPGDVILAIDG 58

Query: 186 VPVTEMSRIEAWSLLKK 202
                M+  +A   +K 
Sbjct: 59  FGTESMTHADAQDRIKA 75

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 70.5 bits (173), Expect = 4e-15
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 47  GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
           G+S  S  V+         G  L+GG D+    + + ++  G+ A     L  GD IL+I
Sbjct: 1   GSSGSSGNVVLPG--PAPWGFRLSGGIDFNQP-LVITRITPGSKAAA-ANLCPGDVILAI 56

Query: 107 NGKSMKGLTHKESLAILKR-GPPVEITLIKDGAGL 140
           +G   + +TH ++   +K     + + + +    L
Sbjct: 57  DGFGTESMTHADAQDRIKAASYQLCLKIDRAETRL 91

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 77.0 bits (190), Expect = 1e-17
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
            +I L +     GF L GGKD    +QPL + ++  G  A     L  GD I  I+    
Sbjct: 5   QQIDL-QGPGPWGFRLVGGKDF---EQPLAISRVTPGSKAALAN-LCIGDVITAIDGENT 59

Query: 189 TEMSRIEAWSLLKK 202
           + M+ +EA + +K 
Sbjct: 60  SNMTHLEAQNRIKG 73

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 65.8 bits (161), Expect = 1e-13
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 52  SVVVLHRDLPGNSV-GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKS 110
           S+     DL G    G  L GG D+E   + + +V  G+ A     L  GD I +I+G++
Sbjct: 1   SMTTQQIDLQGPGPWGFRLVGGKDFEQP-LAISRVTPGSKAAL-ANLCIGDVITAIDGEN 58

Query: 111 MKGLTHKESLAILKR-GPPVEITL 133
              +TH E+   +K     + +T+
Sbjct: 59  TSNMTHLEAQNRIKGCTDNLTLTV 82

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 76.9 bits (190), Expect = 1e-17
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
             ++L    A  GF L+GGKD    + PLT+  +  GG A +   ++ GD +L+I+ +  
Sbjct: 5   YSVSL-VGPAPWGFRLQGGKD---FNMPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINA 59

Query: 189 TEMSRIEAWSLLKK 202
             M+ +EA + +K 
Sbjct: 60  QGMTHLEAQNKIKG 73

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 68.5 bits (168), Expect = 1e-14
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 66  GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR 125
           G  L GG D+    +T+  +  G  A +   ++ GD +LSI+G + +G+TH E+   +K 
Sbjct: 16  GFRLQGGKDFNMP-LTISSLKDGGKAAQ-ANVRIGDVVLSIDGINAQGMTHLEAQNKIKG 73

Query: 126 -GPPVEITL 133
               + +TL
Sbjct: 74  CTGSLNMTL 82

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 76.5 bits (189), Expect = 2e-17
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
              +TL       GF L+GGKD    + PLT+ +I  G  A ++  L  GD ++ I+ V 
Sbjct: 2   AYSVTL-TGPGPWGFRLQGGKDF---NMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVN 56

Query: 188 VTEMSRIEAWSLLKK 202
              M+ +EA + +K 
Sbjct: 57  TDTMTHLEAQNKIKS 71

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 54  VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
           V L    P    G  L GG D+    +T+ ++  G+ A +  +L +GD +++I+G +   
Sbjct: 5   VTLTGPGP---WGFRLQGGKDFNMP-LTISRITPGSKAAQ-SQLSQGDLVVAIDGVNTDT 59

Query: 114 LTHKESLAILKR-GPPVEITLIKDG 137
           +TH E+   +K     + +TL K  
Sbjct: 60  MTHLEAQNKIKSASYNLSLTLQKSK 84

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 77.6 bits (191), Expect = 2e-17
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 47  GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADR-DGRLQKGDRILS 105
               + ++ +  D      G  + GG D     + V +V  GTPAD    RL +GD+++ 
Sbjct: 12  PHDNLVLIRMKPD-ENGRFGFNVKGGYDQ-KMPVIVSRVAPGTPADLCVPRLNEGDQVVL 69

Query: 106 INGKSMKGLTHKESLAILKRGP 127
           ING+ +   TH + +  +K   
Sbjct: 70  INGRDIAEHTHDQVVLFIKASC 91

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 72.6 bits (178), Expect = 9e-16
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 125 RGPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEK-NGQLKAGDEILT 182
               V I +  D     GF+++GG D      P+ V ++  G  A+    +L  GD+++ 
Sbjct: 13  HDNLVLIRMKPDENGRFGFNVKGGYDQ---KMPVIVSRVAPGTPADLCVPRLNEGDQVVL 69

Query: 183 INNVPVTEMSRIEAWSLLKK 202
           IN   + E +  +    +K 
Sbjct: 70  INGRDIAEHTHDQVVLFIKA 89

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 76.2 bits (188), Expect = 3e-17
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
            + + +    A  GF + GG+D      P+ V K+   G AE    L+ GD I+ IN   
Sbjct: 7   GLTVDV-AGPAPWGFRISGGRDFH---TPIIVTKVTERGKAEAAD-LRPGDIIVAINGQS 61

Query: 188 VTEMSRIEAWSLLKK 202
              M   EA S +++
Sbjct: 62  AENMLHAEAQSKIRQ 76

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 69.6 bits (171), Expect = 6e-15
 Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 47  GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
           G+S  S + +         G  ++GG D+ +  I V KV     A+    L+ GD I++I
Sbjct: 1   GSSGSSGLTVDVA-GPAPWGFRISGGRDFHTP-IIVTKVTERGKAEAAD-LRPGDIIVAI 57

Query: 107 NGKSMKGLTHKESLAILKR-GPPVEITLIKDGA 138
           NG+S + + H E+ + +++   P+ + L +   
Sbjct: 58  NGQSAENMLHAEAQSKIRQSASPLRLQLDRSSG 90

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 75.2 bits (185), Expect = 1e-16
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 7/97 (7%)

Query: 38  GGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRL 97
           GG      P   E   V + +      +GI++  G       I V KV  G+ A + G L
Sbjct: 7   GGERRKDRPYVEEPRHVKVQKG--SEPLGISIVSGEK---GGIYVSKVTVGSIAHQAG-L 60

Query: 98  QKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLI 134
           + GD++L  NG +++  T +++  I+ +     IT++
Sbjct: 61  EYGDQLLEFNGINLRSATEQQARLIIGQQCD-TITIL 96

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 65.6 bits (160), Expect = 3e-13
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
              P  + + K    LG S+  G+        + V K+  G  A + G L+ GD++L  N
Sbjct: 17  VEEPRHVKVQKGSEPLGISIVSGEKG-----GIYVSKVTVGSIAHQAG-LEYGDQLLEFN 70

Query: 185 NVPVTEMSRIEAWSLLKKLND 205
            + +   +  +A  ++ +  D
Sbjct: 71  GINLRSATEQQARLIIGQQCD 91

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 74.3 bits (183), Expect = 1e-16
 Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 8/87 (9%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
            V++ +D   +  G T++G      + + V  V  G  A + G +++GDRI+ +NG  + 
Sbjct: 11  CVIIQKD--QHGFGFTVSGD-----RIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVT 62

Query: 113 GLTHKESLAILKRGPPVEITLIKDGAG 139
             +H E + ++K G  V +TL+   +G
Sbjct: 63  NSSHLEVVKLIKSGAYVALTLLGSSSG 89

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 64.6 bits (158), Expect = 3e-13
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 8/76 (10%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
           G    + + KD  G GF++ G +        + V+ +  GG A K G +K GD I+ +N 
Sbjct: 7   GVQRCVIIQKDQHGFGFTVSGDR-------IVLVQSVRPGGAAMKAG-VKEGDRIIKVNG 58

Query: 186 VPVTEMSRIEAWSLLK 201
             VT  S +E   L+K
Sbjct: 59  TMVTNSSHLEVVKLIK 74

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 73.9 bits (182), Expect = 1e-16
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
           +V   ++     +GITL      E     V +++ G    R G L  GD I  ING S+ 
Sbjct: 4   LVQFQKN-TDEPMGITLKMN---ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVA 59

Query: 113 GLTHKESLAILKR-GPPVEITLI 134
             T ++   +L+     +   ++
Sbjct: 60  NQTVEQLQKMLREMRGSITFKIV 82

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 60.4 bits (147), Expect = 8e-12
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 6/77 (7%)

Query: 130 EITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
            +   K     +G +L+  + +        V +I  GG   + G L  GDEI  IN + V
Sbjct: 4   LVQFQKNTDEPMGITLKMNELNH-----CIVARIMHGGMIHRQGTLHVGDEIREINGISV 58

Query: 189 TEMSRIEAWSLLKKLND 205
              +  +   +L+++  
Sbjct: 59  ANQTVEQLQKMLREMRG 75

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 74.3 bits (182), Expect = 5e-16
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 14/99 (14%)

Query: 49  SEVSVVVLHRDLPG--NSVGITLAGGSDYESKE-----------ITVHKVISGTPADRDG 95
           S V  V +H+   G    +G ++ GG D +  +           I V +V  G PA+  G
Sbjct: 22  SMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG 81

Query: 96  RLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLI 134
            LQ GD+I+ +NG  M  +TH ++   L +     + L+
Sbjct: 82  -LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 119

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 68.9 bits (168), Expect = 3e-14
 Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 14/100 (14%)

Query: 122 ILKRGPPVEITLIK----DGAGLGFSLEGGKDSP---------FGDQPLTVKKIFTGGCA 168
           +  +     + + K    +   LGFS+ GG D             D+ + V ++  GG A
Sbjct: 18  LYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPA 77

Query: 169 EKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI 208
           E  G L+ GD+I+ +N   +T ++  +A   L K ++  +
Sbjct: 78  EIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVV 116

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 72.4 bits (178), Expect = 5e-16
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
                V ++   +      +GI L      E +  TV +++ G    R G L  GD IL 
Sbjct: 8   HSGHMVRLIQFEKV-TEEPMGICLKLN---EKQSCTVARILHGGMIHRQGSLHVGDEILE 63

Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLI 134
           ING ++   +  +    +K     + + +I
Sbjct: 64  INGTNVTNHSVDQLQKAMKETKGMISLKVI 93

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 63.5 bits (155), Expect = 9e-13
 Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 11/96 (11%)

Query: 111 MKGLTHKESLAILKRGPPVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAE 169
           M    H  S  +++      I   K     +G  L+         Q  TV +I  GG   
Sbjct: 1   MGHHHHHHSGHMVR-----LIQFEKVTEEPMGICLKLN-----EKQSCTVARILHGGMIH 50

Query: 170 KNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND 205
           + G L  GDEIL IN   VT  S  +    +K+   
Sbjct: 51  RQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKG 86

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 71.6 bits (176), Expect = 1e-15
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
           +     V + +D      G  ++         +TV  V +G  A   G+L  GD+IL +N
Sbjct: 6   SGVRHTVKIDKDTLLQDYGFHISESLP-----LTVVAVTAGGSAH--GKLFPGDQILQMN 58

Query: 108 GKSMKGLTHKESLAILKR-GPPVEITL 133
            +  + L+ + ++ IL+     + IT+
Sbjct: 59  NEPAEDLSWERAVDILREAEDSLSITV 85

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 64.7 bits (158), Expect = 3e-13
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
           V+I         GF +           PLTV  +  GG A   G+L  GD+IL +NN P 
Sbjct: 12  VKIDKDTLLQDYGFHISE-------SLPLTVVAVTAGGSAH--GKLFPGDQILQMNNEPA 62

Query: 189 TEMSRIEAWSLLKK 202
            ++S   A  +L++
Sbjct: 63  EDLSWERAVDILRE 76

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 71.3 bits (175), Expect = 2e-15
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 13/92 (14%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKE-------ITVHKVISGTPADRDGRLQKGDRILS 105
            V + +D     +G +++GG              I V +V    PA     LQ GD+I+ 
Sbjct: 6   RVRVEKD---PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQ 60

Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
            NG S   + H +++++LK     VE+ ++++
Sbjct: 61  ANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 92

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 69.0 bits (169), Expect = 1e-14
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPF-----GDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
           + + + KD   LGFS+ GG           D  + V ++   G A     L+ GD+I+  
Sbjct: 5   IRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQA 61

Query: 184 NNVPVTEMSRIEAWSLLKK 202
           N      +   +A SLLK 
Sbjct: 62  NGYSFINIEHGQAVSLLKT 80

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 71.3 bits (175), Expect = 2e-15
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 13/99 (13%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE-------ITVHKVISGTPADRDGRLQ 98
               +   V + +D     +G +++GG              I V +V    PA     LQ
Sbjct: 7   ELAKQEIRVRVEKD---PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQ 61

Query: 99  KGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
            GD+I+  NG S   + H +++++LK     VE+ ++++
Sbjct: 62  PGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 100

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 67.1 bits (164), Expect = 6e-14
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPF-----GDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
           + + + KD   LGFS+ GG           D  + V ++   G A     L+ GD+I+  
Sbjct: 13  IRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQA 69

Query: 184 NNVPVTEMSRIEAWSLLKK 202
           N      +   +A SLLK 
Sbjct: 70  NGYSFINIEHGQAVSLLKT 88

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 71.4 bits (175), Expect = 2e-15
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
            +    +     +G TL G +      + VH +     A   G  ++GD I+SI     K
Sbjct: 26  SIRFTAE--EGDLGFTLRGNAP-----VQVHFLDPYCSASVAG-AREGDYIVSIQLVDCK 77

Query: 113 GLTHKESLAILKRGPPVEITL 133
            LT  E + +LK     EI +
Sbjct: 78  WLTLSEVMKLLKSFGEDEIEM 98

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 70.2 bits (172), Expect = 6e-15
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 122 ILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEIL 181
           +  +  P  I    +   LGF+L G       + P+ V  +     A   G  + GD I+
Sbjct: 18  LYFQSMPRSIRFTAEEGDLGFTLRG-------NAPVQVHFLDPYCSASVAG-AREGDYIV 69

Query: 182 TINNVPVTEMSRIEAWSLLKKLNDGTIQ 209
           +I  V    ++  E   LLK   +  I+
Sbjct: 70  SIQLVDCKWLTLSEVMKLLKSFGEDEIE 97

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 69.9 bits (172), Expect = 3e-15
 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 8/87 (9%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
            V + R       G TL+G +        +  V+ G+PAD  G L+ GD+IL++N  ++K
Sbjct: 5   SVEVARG--RAGYGFTLSGQAP-----CVLSCVMRGSPADFVG-LRAGDQILAVNEINVK 56

Query: 113 GLTHKESLAILKRGPPVEITLIKDGAG 139
             +H++ + ++ +   V   +I +G G
Sbjct: 57  KASHEDVVKLIGKCSGVLHMVIAEGVG 83

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 64.9 bits (159), Expect = 2e-13
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 8/75 (10%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
              + + +  AG GF+L G         P  +  +  G  A+  G L+AGD+IL +N + 
Sbjct: 3   VRSVEVARGRAGYGFTLSG-------QAPCVLSCVMRGSPADFVG-LRAGDQILAVNEIN 54

Query: 188 VTEMSRIEAWSLLKK 202
           V + S  +   L+ K
Sbjct: 55  VKKASHEDVVKLIGK 69

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 71.0 bits (174), Expect = 3e-15
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
            +    +     +G TL G +      + VH +     A   G  ++GD I+SI G   K
Sbjct: 18  GIHFTVE--EGDLGFTLRGNTP-----VQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCK 69

Query: 113 GLTHKESLAILKRGPPVEITL 133
            LT  E + +LK     E+ +
Sbjct: 70  WLTVSEVMKLLKSFGGEEVEM 90

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 65.2 bits (159), Expect = 3e-13
 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 8/83 (9%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
            PP  I    +   LGF+L G       + P+ V  +     A   G  K GD I++I  
Sbjct: 14  SPPRGIHFTVEEGDLGFTLRG-------NTPVQVHFLDPHCSASLAG-AKEGDYIVSIQG 65

Query: 186 VPVTEMSRIEAWSLLKKLNDGTI 208
           V    ++  E   LLK      +
Sbjct: 66  VDCKWLTVSEVMKLLKSFGGEEV 88

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 69.6 bits (171), Expect = 4e-15
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 11/89 (12%)

Query: 47  GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
           G  +   + +H+D     VG     G         +  ++  + A R+G L     I  I
Sbjct: 1   GAMDPRTITMHKD-STGHVGFIFKNG--------KITSIVKDSSAARNG-LLTEHNICEI 50

Query: 107 NGKSMKGLTHKESLAILKR-GPPVEITLI 134
           NG+++ GL   +   IL   G  V IT++
Sbjct: 51  NGQNVIGLKDSQIADILSTSGTVVTITIM 79

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 12/76 (15%)

Query: 128 PVEITLIKDGAG-LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           P  IT+ KD  G +GF  + GK          +  I     A +NG L     I  IN  
Sbjct: 5   PRTITMHKDSTGHVGFIFKNGK----------ITSIVKDSSAARNG-LLTEHNICEINGQ 53

Query: 187 PVTEMSRIEAWSLLKK 202
            V  +   +   +L  
Sbjct: 54  NVIGLKDSQIADILST 69

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 70.1 bits (172), Expect = 5e-15
 Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 47  GTSEVS----VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDR 102
           G+S  S    +  L ++  G S G +L        K + +  +     A R G +   D 
Sbjct: 1   GSSGSSGQPRLCYLVKE--GGSYGFSLKTVQ--GKKGVYMTDITPQGVAMRAG-VLADDH 55

Query: 103 ILSINGKSMKGLTHKESLAILKR-GPPVEITLI 134
           ++ +NG++++  +H+E +  +K+ G  V   L+
Sbjct: 56  LIEVNGENVEDASHEEVVEKVKKSGSRVMFLLV 88

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
           G P    L+K+G   GFSL+  +    G + + +  I   G A + G + A D ++ +N 
Sbjct: 7   GQPRLCYLVKEGGSYGFSLKTVQ----GKKGVYMTDITPQGVAMRAG-VLADDHLIEVNG 61

Query: 186 VPVTEMSRIEAWSLLKK 202
             V + S  E    +KK
Sbjct: 62  ENVEDASHEEVVEKVKK 78

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 69.8 bits (171), Expect = 6e-15
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 9/103 (8%)

Query: 39  GCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE------ITVHKVISGTPAD 92
           G   L     S+  +V + +     + G  +                  + K+   +PA 
Sbjct: 4   GSSGLSDFSWSQRKLVTVEKQ-DNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAH 62

Query: 93  RDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLI 134
             G LQ GD + +ING S +G T+K+ + +++  G  + I  +
Sbjct: 63  CAG-LQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIETL 104

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 62.1 bits (151), Expect = 3e-12
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 113 GLTHKESLAILKRGPPVEITLIK-DGAGLGFSLEGGK----DSPFGDQPLTVKKIFTGGC 167
           G +    L+         +T+ K D    GF ++  +    ++   +    + KI     
Sbjct: 1   GSSGSSGLSDFSWSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSP 60

Query: 168 AEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK 202
           A   G L+AGD +  IN V     +  +   L++ 
Sbjct: 61  AHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIRS 94

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 69.3 bits (170), Expect = 7e-15
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 9/95 (9%)

Query: 47  GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE------ITVHKVISGTPADRDGRLQKG 100
           G+ +  V+ L +     + G  +     +  +E        V +V   +PA   G L  G
Sbjct: 1   GSQQRKVLTLEKG-DNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPG 58

Query: 101 DRILSINGKSMKGLTHKESLAILKR-GPPVEITLI 134
           D I S+NG +++G+ H+E + I+K  G  + +  +
Sbjct: 59  DTIASVNGLNVEGIRHREIVDIIKASGNVLRLETL 93

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 58.9 bits (143), Expect = 3e-11
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 128 PVEITLIK-DGAGLGFSLEGGK----DSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILT 182
              +TL K D    GF ++       +    +    V ++     A+  G L  GD I +
Sbjct: 5   RKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIAS 63

Query: 183 INNVPVTEMSRIEAWSLLKK 202
           +N + V  +   E   ++K 
Sbjct: 64  VNGLNVEGIRHREIVDIIKA 83

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 69.0 bits (169), Expect = 8e-15
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
           S++ + +          G T+          I V  V +G+PA+   +LQ  D I++IN 
Sbjct: 3   SDMRISINQTPGKSLDFGFTIKWDIP----GIFVASVEAGSPAEF-SQLQVDDEIIAINN 57

Query: 109 KSMKGLTHKESLAILKRGP 127
                   KE    + +  
Sbjct: 58  TKFSYNDSKEWEEAMAKAQ 76

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 60.1 bits (146), Expect = 1e-11
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 8/75 (10%)

Query: 129 VEITLIKDGA-GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           + I      +   GF+++      F      V  +  G  AE +  L+  DEI+ INN  
Sbjct: 7   ISINQTPGKSLDFGFTIKWDIPGIF------VASVEAGSPAEFSQ-LQVDDEIIAINNTK 59

Query: 188 VTEMSRIEAWSLLKK 202
            +     E    + K
Sbjct: 60  FSYNDSKEWEEAMAK 74

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 68.5 bits (168), Expect = 1e-14
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
           +  L +       G  L            +  V  G+PA R G L+  DR++ +NG++++
Sbjct: 7   LCHLRKG--PQGYGFNLHSDKSRPG--QYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVE 61

Query: 113 GLTHKESLAILKR-GPPVEITLIKDGAGL 140
           GL H E +A +K       + ++     L
Sbjct: 62  GLRHAEVVASIKAREDEARLLVVGPSTRL 90

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 61.5 bits (150), Expect = 3e-12
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           P    L K   G GF+L   K  P       ++ +  G  A ++G L+A D ++ +N   
Sbjct: 5   PRLCHLRKGPQGYGFNLHSDKSRP----GQYIRSVDPGSPAARSG-LRAQDRLIEVNGQN 59

Query: 188 VTEMSRIEAWSLLKK 202
           V  +   E  + +K 
Sbjct: 60  VEGLRHAEVVASIKA 74

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
           P   E   + + R    +  G T+   S      + V  V SG PA+R G LQ+ D +L 
Sbjct: 11  PENGEKLQITIRRG--KDGFGFTICCDSP-----VRVQAVDSGGPAERAG-LQQLDTVLQ 62

Query: 106 INGKSMKGLTHKESLAILKRGPPVEITLIKDGAG 139
           +N + ++     E    ++  P   I L+   +G
Sbjct: 63  LNERPVEHWKCVELAHEIRSCPSEIILLVWRVSG 96

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 67.4 bits (165), Expect = 4e-14
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 8/79 (10%)

Query: 124 KRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
           + G  ++IT+ +   G GF++         D P+ V+ + +GG AE+ G L+  D +L +
Sbjct: 12  ENGEKLQITIRRGKDGFGFTICC-------DSPVRVQAVDSGGPAERAG-LQQLDTVLQL 63

Query: 184 NNVPVTEMSRIEAWSLLKK 202
           N  PV     +E    ++ 
Sbjct: 64  NERPVEHWKCVELAHEIRS 82

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 6/82 (7%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
           VVV+ +    N  G  L  G +   K   +  +  G+PA+  G L+  D ++++NGKS++
Sbjct: 8   VVVIKKG--SNGYGFYLRAGPEQ--KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVE 62

Query: 113 GLTHKESLAILKRGPPVEITLI 134
            L H   + ++++G   + TL+
Sbjct: 63  ALDHDGVVEMIRKGGD-QTTLL 83

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 63.5 bits (155), Expect = 9e-13
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           P  + + K   G GF L  G +         +K I  G  AE  G LK  D ++ +N   
Sbjct: 6   PRVVVIKKGSNGYGFYLRAGPEQK----GQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKS 60

Query: 188 VTEMSRIEAWSLLKK 202
           V  +       +++K
Sbjct: 61  VEALDHDGVVEMIRK 75

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 9/88 (10%)

Query: 119 SLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGD 178
           S     +   + +T++K   G GF++              VK+I           L  GD
Sbjct: 2   SSGSSGQAELMTLTIVKGAQGFGFTIADSPTGQR------VKQILDIQGC---PGLCEGD 52

Query: 179 EILTINNVPVTEMSRIEAWSLLKKLNDG 206
            I+ IN   V  +S  E   +LK    G
Sbjct: 53  LIVEINQQNVQNLSHTEVVDILKDCPIG 80

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 66.3 bits (162), Expect = 9e-14
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 10/90 (11%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
            G +E+  + + +       G T+A             +V           L +GD I+ 
Sbjct: 6   SGQAELMTLTIVKG--AQGFGFTIADSPTG-------QRVKQILDIQGCPGLCEGDLIVE 56

Query: 106 INGKSMKGLTHKESLAILKRGPP-VEITLI 134
           IN ++++ L+H E + ILK  P   E +LI
Sbjct: 57  INQQNVQNLSHTEVVDILKDCPIGSETSLI 86

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 8/90 (8%)

Query: 47  GTSEVS--VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRIL 104
           G+S  S  VVV+ +    N  G  L  G +   K   +  +  G+PA+  G L+  D ++
Sbjct: 1   GSSGSSGRVVVIKKG--SNGYGFYLRAGPEQ--KGQIIKDIEPGSPAEAAG-LKNNDLVV 55

Query: 105 SINGKSMKGLTHKESLAILKRGPPVEITLI 134
           ++NGKS++ L H   + ++++G   + TL+
Sbjct: 56  AVNGKSVEALDHDGVVEMIRKGGD-QTTLL 84

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 63.2 bits (154), Expect = 1e-12
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
               + + K   G GF L  G +         +K I  G  AE  G LK  D ++ +N  
Sbjct: 6   SGRVVVIKKGSNGYGFYLRAGPEQK----GQIIKDIEPGSPAEAAG-LKNNDLVVAVNGK 60

Query: 187 PVTEMSRIEAWSLLKK 202
            V  +       +++K
Sbjct: 61  SVEALDHDGVVEMIRK 76

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 67.4 bits (165), Expect = 3e-14
 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKE-ITVHKVISGTPADRDGRLQKGDRILSINGKSM 111
            + L +       G  L      + +    + +V  G PA + G +Q GDR++++ G+S+
Sbjct: 6   CLHLEKG--PQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESV 62

Query: 112 KGLTHKESLAILKR-GPPVEITLI 134
           +GL H+E+++ ++  G  V +T++
Sbjct: 63  EGLGHEETVSRIQGQGSCVSLTVV 86

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           P  + L K   G GF L   K    G     + ++  G  A+K G ++AGD ++ +    
Sbjct: 4   PRCLHLEKGPQGFGFLLREEK-GLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGES 61

Query: 188 VTEMSRIEAWSLLKK 202
           V  +   E  S ++ 
Sbjct: 62  VEGLGHEETVSRIQG 76

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 67.3 bits (165), Expect = 3e-14
 Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
           +  L +    N  G  L G          +  V  G+PA++ G L  GDR++ +NG++++
Sbjct: 6   LCCLEKG--PNGYGFHLHGEKG--KLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVE 60

Query: 113 GLTHKESLAILKR-GPPVEITLIK 135
             TH++ ++ ++     V + ++ 
Sbjct: 61  KETHQQVVSRIRAALNAVRLLVVD 84

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 66.9 bits (164), Expect = 4e-14
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
           R  P    L K   G GF L G K          ++ +  G  AEK G L AGD ++ +N
Sbjct: 1   RMLPRLCCLEKGPNGYGFHLHGEKGKL----GQYIRLVEPGSPAEKAG-LLAGDRLVEVN 55

Query: 185 NVPVTEMSRIEAWSLLKK 202
              V + +  +  S ++ 
Sbjct: 56  GENVEKETHQQVVSRIRA 73

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 67.4 bits (165), Expect = 4e-14
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 10/87 (11%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYE------SKEITVHKVISGTPADRDGRLQKGDRILSI 106
            +V+H    G   G +L     Y       +    V  V  G+PA   G L+ GD I  I
Sbjct: 5   PIVIHSS--GKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHI 61

Query: 107 NGKSMKGLTHKESLAILKRGPPVEITL 133
           NG+S+ GL H + + +L +    +I+L
Sbjct: 62  NGESVLGLVHMDVVELLLKSGN-KISL 87

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 131 ITLIKDGAGLGFSLEGGK----DSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           I +   G   GFSL   +    DS        V  +  G  A++ G L+AGD I  IN  
Sbjct: 6   IVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGE 64

Query: 187 PVTEMSRIEAWSLLKK 202
            V  +  ++   LL K
Sbjct: 65  SVLGLVHMDVVELLLK 80

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 67.6 bits (165), Expect = 5e-14
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 9/84 (10%)

Query: 124 KRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
           K G  V I LIK   G GF++    DSP G +   VK I           L+ GD I  I
Sbjct: 9   KAGLLVTIPLIKGPKGFGFAIA---DSPTGQK---VKMILDSQWC---QGLQKGDIIKEI 59

Query: 184 NNVPVTEMSRIEAWSLLKKLNDGT 207
            +  V  ++ ++   +LK+   G 
Sbjct: 60  YHQNVQNLTHLQVVEVLKQFPVGA 83

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 10/97 (10%)

Query: 39  GCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQ 98
           G  + L      +  + L +       G  +A          T  KV     +     LQ
Sbjct: 1   GAMATLYKKAGLLVTIPLIKG--PKGFGFAIADS-------PTGQKVKMILDSQWCQGLQ 51

Query: 99  KGDRILSINGKSMKGLTHKESLAILKRGPP-VEITLI 134
           KGD I  I  ++++ LTH + + +LK+ P   ++ L+
Sbjct: 52  KGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLL 88

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 67.1 bits (164), Expect = 7e-14
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 38  GGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRL 97
           G   S  +  T       L +   G + G  L    D +     +  +  G+PA++ G L
Sbjct: 1   GSSGSSGMASTFNPRECKLSKQ-EGQNYGFFLRIEKDTD--GHLIRVIEEGSPAEKAG-L 56

Query: 98  QKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLI 134
             GDR+L ING  +    H + + ++++ G  V + ++
Sbjct: 57  LDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVL 94

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 15/114 (13%)

Query: 119 SLAILKRGPPVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAG 177
           S  +     P E  L K +G   GF L   KD+        ++ I  G  AEK G L  G
Sbjct: 5   SSGMASTFNPRECKLSKQEGQNYGFFLRIEKDTD----GHLIRVIEEGSPAEKAG-LLDG 59

Query: 178 DEILTINNVPVTEMSRIEAWSLLKK---------LNDGTIQDIKALGYDLNSLG 222
           D +L IN V V +    +   L++K         L+  + +       DL  L 
Sbjct: 60  DRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLKELD 113

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 66.6 bits (163), Expect = 8e-14
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
           +  + +    +  G  L            +  V   +PA+  G L+  DRI+ +NG  M+
Sbjct: 12  LCTMKKG--PSGYGFNLHSDKSKPG--QFIRSVDPDSPAEASG-LRAQDRIVEVNGVCME 66

Query: 113 GLTHKESLAILKRGPPVEITLI 134
           G  H + ++ ++ G   E  L+
Sbjct: 67  GKQHGDVVSAIRAGGD-ETKLL 87

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           P   T+ K  +G GF+L   K  P       ++ +     AE +G L+A D I+ +N V 
Sbjct: 10  PRLCTMKKGPSGYGFNLHSDKSKP----GQFIRSVDPDSPAEASG-LRAQDRIVEVNGVC 64

Query: 188 VTEMSRIEAWSLLKK 202
           +      +  S ++ 
Sbjct: 65  MEGKQHGDVVSAIRA 79

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 66.2 bits (162), Expect = 9e-14
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
             +IT+ +   G GF++         D P+ V+ + +GG AE+ G L+  D +L +N  P
Sbjct: 4   YRQITIPRGKDGFGFTICC-------DSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERP 55

Query: 188 VTEMSRIEAWSLLKK 202
           V     +E    ++ 
Sbjct: 56  VEHWKCVELAHEIRS 70

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 65.1 bits (159), Expect = 2e-13
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
            + + R    +  G T+          + V  V SG PA+R G LQ+ D +L +N + ++
Sbjct: 6   QITIPRG--KDGFGFTICCD-----SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVE 57

Query: 113 GLTHKESLAILKRGPPVEITLIKDG 137
                E    ++  P   I L+   
Sbjct: 58  HWKCVELAHEIRSCPSEIILLVWRM 82

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 65.8 bits (161), Expect = 1e-13
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
           +  L +    N  G  L            + +V  G PAD  G L+  D I+ +NG ++ 
Sbjct: 6   LCRLAKG--ENGYGFHLNAIRGLP--GSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVL 60

Query: 113 GLTHKESLAILKR-GPPVEITLI 134
              +++ +  ++  G  V + + 
Sbjct: 61  DEPYEKVVDRIQSSGKNVTLLVC 83

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           P    L K   G GF L   +    G     +K++  GG A+  G L+  D I+ +N V 
Sbjct: 4   PKLCRLAKGENGYGFHLNAIR----GLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVN 58

Query: 188 VTEMSRIEAWSLLKK 202
           V +    +    ++ 
Sbjct: 59  VLDEPYEKVVDRIQS 73

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 8/88 (9%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
           + E+  V + +   G   G T+A           V +++    + R   L++GD I+ +N
Sbjct: 1   SMELITVHIVKGPMG--FGFTIADSPGGGG--QRVKQIV---DSPRSRGLKEGDLIVEVN 53

Query: 108 GKSMKGLTHKESLAILKRGPP-VEITLI 134
            K+++ LTH + + +L   P   E+TL+
Sbjct: 54  KKNVQALTHNQVVDMLVESPKGSEVTLL 81

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 61.1 bits (149), Expect = 4e-12
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 7/79 (8%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
            + + ++K   G GF++        G     VK+I           LK GD I+ +N   
Sbjct: 4   LITVHIVKGPMGFGFTIADSP----GGGGQRVKQI--VDSPRS-RGLKEGDLIVEVNKKN 56

Query: 188 VTEMSRIEAWSLLKKLNDG 206
           V  ++  +   +L +   G
Sbjct: 57  VQALTHNQVVDMLVESPKG 75

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 64.0 bits (156), Expect = 8e-13
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 54  VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
             L +   G + G  L    D +     +  +  G+PA++ G L  GDR+L ING  +  
Sbjct: 5   SKLSKQ-EGQNYGFFLRIEKDTD--GHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDK 60

Query: 114 LTHKESLAILKR-GPPVEITLI 134
             H + + ++++ G  V + ++
Sbjct: 61  EEHAQVVELVRKSGNSVTLLVL 82

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 58.2 bits (141), Expect = 7e-11
 Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 15/105 (14%)

Query: 128 PVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           P E  L K +G   GF L   KD+        ++ I  G  AEK G L  GD +L IN V
Sbjct: 2   PRESKLSKQEGQNYGFFLRIEKDTD----GHLIRVIEEGSPAEKAG-LLDGDRVLRINGV 56

Query: 187 PVTEMSRIEAWSLLKK---------LNDGTIQDIKALGYDLNSLG 222
            V +    +   L++K         L+  + +       DL  L 
Sbjct: 57  FVDKEEHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLKELD 101

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 62.8 bits (153), Expect = 1e-12
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 10/88 (11%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
                V+ V++ R      +G ++  G         +  ++ G  A+R G ++ G RI+ 
Sbjct: 7   ETMGNVTTVLIRRPDLRYQLGFSVQNG--------IICSLMRGGIAERGG-VRVGHRIIE 57

Query: 106 INGKSMKGLTHKESLAILKRGPPVEITL 133
           ING+S+    H++ + IL      EI +
Sbjct: 58  INGQSVVATPHEKIVHILSNAVG-EIHM 84

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 127 PPVEITLIK---DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
             V   LI+       LGFS++ G           +  +  GG AE+ G ++ G  I+ I
Sbjct: 10  GNVTTVLIRRPDLRYQLGFSVQNGI----------ICSLMRGGIAERGG-VRVGHRIIEI 58

Query: 184 NNVPVTEMSRIEAWSLLKK 202
           N   V      +   +L  
Sbjct: 59  NGQSVVATPHEKIVHILSN 77

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 65.6 bits (159), Expect = 2e-12
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
           +  + +    +  G  L            +  V   +PA+  G L+  DRI+ +NG  M+
Sbjct: 12  LCTMKKG--PSGYGFNLHSDKSKPG--QFIRSVDPDSPAEASG-LRAQDRIVEVNGVCME 66

Query: 113 GLTHKESLAILKRGPPVEITLI 134
           G  H + ++ ++ G   E  L+
Sbjct: 67  GKQHGDVVSAIRAGGD-ETKLL 87

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 57.9 bits (139), Expect = 9e-10
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           P   T+ K  +G GF+L   K  P       ++ +     AE +G L+A D I+ +N V 
Sbjct: 10  PRLCTMKKGPSGYGFNLHSDKSKP----GQFIRSVDPDSPAEASG-LRAQDRIVEVNGVC 64

Query: 188 VTEMSRIEAWSLLKK 202
           +      +  S ++ 
Sbjct: 65  MEGKQHGDVVSAIRA 79

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 62.2 bits (151), Expect = 3e-12
 Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 14/101 (13%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE-----------ITVHKVISGTPADRD 94
               +   V+L +       G  L G       E             +  V  G  A R 
Sbjct: 3   DYIIKEKTVLLQKK-DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRA 61

Query: 95  GRLQKGDRILSINGKSMKGLTHKESLAILKRGPP-VEITLI 134
           G L+ GD ++ +NG+++  + H++ + ++++G   + + ++
Sbjct: 62  G-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 101

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 11/85 (12%)

Query: 128 PVEITLIK-DGAGLGFSLEGGKDSPFGDQ---------PLTVKKIFTGGCAEKNGQLKAG 177
              + L K D  G GF L G K     ++            ++ +  GG A + G L+ G
Sbjct: 8   EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMG 66

Query: 178 DEILTINNVPVTEMSRIEAWSLLKK 202
           D ++ +N   V ++   +  +++++
Sbjct: 67  DFLIEVNGQNVVKVGHRQVVNMIRQ 91

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 62.6 bits (152), Expect = 3e-12
 Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
           +  + +    +  G  L            +  V   +PA+  G L+  DRI+ +NG  M+
Sbjct: 12  LCTMKKG--PSGYGFNLHSDKSKPG--QFIRSVDPDSPAEASG-LRAQDRIVEVNGVCME 66

Query: 113 GLTHKESLAILKR-GPPVEITLIK 135
           G  H + ++ ++  G   ++ ++ 
Sbjct: 67  GKQHGDVVSAIRAGGDETKLLVVD 90

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 58.0 bits (140), Expect = 1e-10
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           P   T+ K  +G GF+L   K  P       ++ +     AE +G L+A D I+ +N V 
Sbjct: 10  PRLCTMKKGPSGYGFNLHSDKSKP----GQFIRSVDPDSPAEASG-LRAQDRIVEVNGVC 64

Query: 188 VTEMSRIEAWSLLKK 202
           +      +  S ++ 
Sbjct: 65  MEGKQHGDVVSAIRA 79

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 62.3 bits (151), Expect = 6e-12
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 14/93 (15%)

Query: 54  VVLHRDLPGNSVGITLAGGSDYESKE-----------ITVHKVISGTPADRDGRLQKGDR 102
           V+L +       G  L G       E             +  V  G  A R G L+ GD 
Sbjct: 31  VLLQKK-DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDF 88

Query: 103 ILSINGKSMKGLTHKESLAILKR-GPPVEITLI 134
           ++ +NG+++  + H++ + ++++ G  + + ++
Sbjct: 89  LIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 121

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query: 125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQ---------PLTVKKIFTGGCAEKNGQLK 175
                 +   KD  G GF L G K     ++            ++ +  GG A + G L+
Sbjct: 26  IKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LR 84

Query: 176 AGDEILTINNVPVTEMSRIEAWSLLKK 202
            GD ++ +N   V ++   +  +++++
Sbjct: 85  MGDFLIEVNGQNVVKVGHRQVVNMIRQ 111

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 60.5 bits (147), Expect = 7e-12
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 51  VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKS 110
             +V + +   G  +G+T       E  E+ + +++ G    + G L  GD I  +NG+ 
Sbjct: 7   GRMVGIRKT-AGEHLGVTFRV----EGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQP 61

Query: 111 MKGLTHKESLAILKR 125
           + G   +    +L+ 
Sbjct: 62  V-GSDPRALQELLRN 75

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 52.4 bits (126), Expect = 6e-09
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 8/77 (10%)

Query: 130 EITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
            + + K  G  LG +             L + +I  GG   + G L  GD I  +N  PV
Sbjct: 9   MVGIRKTAGEHLGVTFRVE------GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV 62

Query: 189 TEMSRIEAWSLLKKLND 205
                     LL+  + 
Sbjct: 63  -GSDPRALQELLRNASG 78

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 66.0 bits (160), Expect = 8e-12
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
                 +V  R   G+SVG+ LAGG+D     I V  V+  +PA ++G L++GD+IL +N
Sbjct: 6   LRPSMKLVKFRK--GDSVGLRLAGGND---VGIFVAGVLEDSPAAKEG-LEEGDQILRVN 59

Query: 108 GKSMKGLTHKESLAILKRGPPVE 130
                 +  +E++  L   P  E
Sbjct: 60  NVDFTNIIREEAVLFLLDLPKGE 82

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 61.8 bits (149), Expect = 2e-10
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
            P +++   + G  +G  L GG D       + V  +     A K G L+ GD+IL +NN
Sbjct: 7   RPSMKLVKFRKGDSVGLRLAGGNDV-----GIFVAGVLEDSPAAKEG-LEEGDQILRVNN 60

Query: 186 VPVTEMSRIEAWSLLKKLNDG 206
           V  T + R EA   L  L  G
Sbjct: 61  VDFTNIIREEAVLFLLDLPKG 81

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 61.1 bits (148), Expect = 1e-11
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 31/117 (26%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDY---------------------------ESK 78
             +     V L R       G TL     Y                              
Sbjct: 4   GSSGGPKTVTLKR--TSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMD 61

Query: 79  EITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLI 134
            I V +V  G PA   G L  GDRI+ +NG+S+ G T+ + +A+++     +E++++
Sbjct: 62  TIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVM 117

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 55.3 bits (133), Expect = 1e-09
 Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 26/102 (25%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSP-------------------------FGDQPLTVK 160
           G P  +TL +   G GF+L      P                              + VK
Sbjct: 7   GGPKTVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVK 66

Query: 161 KIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK 202
           ++  GG A + G L  GD I+ +N   V   +  +  +L++ 
Sbjct: 67  QVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQN 107

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 59.7 bits (144), Expect = 3e-11
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 131 ITLIKDGA---GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           I + K        GFSL   ++   G + L V  +   G A K G LKAGDEIL INN  
Sbjct: 19  IHIEKSDTAADTYGFSLSSVEED--GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRA 75

Query: 188 VTEMSRIEAWSLLKK 202
              ++       L +
Sbjct: 76  ADALNSSMLKDFLSQ 90

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 57.7 bits (139), Expect = 1e-10
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 50  EVSVVVLHR-DLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
               + + + D   ++ G +L+   +   + + V+ V     A + G L+ GD IL IN 
Sbjct: 15  VTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINN 73

Query: 109 KSMKGLTHKESLAILKRGPPVEITLI 134
           ++   L        L + P + + + 
Sbjct: 74  RAADALNSSMLKDFLSQ-PSLGLLVR 98

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Length = 195

 Score = 61.5 bits (148), Expect = 5e-11
 Identities = 28/188 (14%), Positives = 52/188 (27%), Gaps = 58/188 (30%)

Query: 64  SVGITLAGGSDYESKE-------ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH 116
            +G +++GG              I V +V    PA     LQ GD+I+  NG S   + H
Sbjct: 3   ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEH 60

Query: 117 KESLAILKRG-----------------------------------------------PPV 129
            +++++LK                                                   +
Sbjct: 61  GQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPTSL 120

Query: 130 EITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDE-ILTINNVPV 188
            I+      G+ +          G+ P+    +           LK G +  +T+     
Sbjct: 121 LISWDASYYGVSYYRI-TYGETGGNSPVQEFTVPYSSSTATISGLKPGVDYTITVYAYSD 179

Query: 189 TEMSRIEA 196
              S   +
Sbjct: 180 YYGSHHYS 187

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Length = 195

 Score = 53.4 bits (127), Expect = 2e-08
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 138 AGLGFSLEGGKDSPF-----GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMS 192
             LGFS+ GG           D  + V ++   G A     L+ GD+I+  N      + 
Sbjct: 2   PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIE 59

Query: 193 RIEAWSLLKKLND 205
             +A SLLK   +
Sbjct: 60  HGQAVSLLKTFQN 72

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 63.8 bits (154), Expect = 5e-11
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 54  VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
           +V  R   G+SVG+ LAGG+D     I V  V+  +PA ++G L++GD+IL +N      
Sbjct: 4   LVKFRK--GDSVGLRLAGGND---VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTN 57

Query: 114 LTHKESLAILKR 125
           +  +E++  L  
Sbjct: 58  IIREEAVLFLLD 69

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 55.7 bits (133), Expect = 2e-08
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
           +++   + G  +G  L GG D       + V  +     A K G L+ GD+IL +NNV  
Sbjct: 2   MKLVKFRKGDSVGLRLAGGNDVG-----IFVAGVLEDSPAAKEG-LEEGDQILRVNNVDF 55

Query: 189 TEMSRIEAWSLLKKLNDG 206
           T + R EA   L  L  G
Sbjct: 56  TNIIREEAVLFLLDLPKG 73

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 56.5 bits (136), Expect = 2e-10
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 131 ITLIKDGA---GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           I + K        GFSL   ++   G + L V  +   G A K G LKAGDEIL INN  
Sbjct: 10  IHIEKSDTAADTYGFSLSSVEED--GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRA 66

Query: 188 VTEMSRIEAWSLLKK 202
              ++       L +
Sbjct: 67  ADALNSSMLKDFLSQ 81

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 55.7 bits (134), Expect = 4e-10
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 46  PGTSEVSVVVLHR-DLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRIL 104
                   + + + D   ++ G +L+   +   + + V+ V     A + G L+ GD IL
Sbjct: 2   AMGKVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEIL 60

Query: 105 SINGKSMKGLTHKESLAILKRGPPVEITL 133
            IN ++   L     L      P + + +
Sbjct: 61  EINNRAADALNSSM-LKDFLSQPSLGLLV 88

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A Length = 388

 Score = 56.9 bits (138), Expect = 6e-09
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 65  VGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
           VG+ +        K++ V     G PA++ G  + GD I++++G ++KG++  +   +L 
Sbjct: 87  VGLEI-TYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLL- 143

Query: 125 RGPP---VEITLIKDGAG 139
           +G     VE+ L   GA 
Sbjct: 144 QGEADSQVEVVLHAPGAP 161

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 27/138 (19%)

Query: 82  VHKVISGTPADRDGRLQKGDRILSINGK---SMKGLTHKESLAILKRGPPVEITLIKDG- 137
           V +V+  + A + G ++ GD I S+NGK   S   L  +  +  +  G  + + L++DG 
Sbjct: 290 VSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFAALRAQ--VGTMPVGSKLTLGLLRDGK 346

Query: 138 ------------------AGLGFSLEGGKDSPFG-DQPLTVKKIFTGGCAEKNGQLKAGD 178
                             + +   +EG + S  G DQ + V  + TG  A + G LK GD
Sbjct: 347 QVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIG-LKKGD 405

Query: 179 EILTINNVPVTEMSRIEA 196
            I+  N   V  ++ +  
Sbjct: 406 VIIGANQQAVKNIAELRK 423

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 30/141 (21%), Positives = 59/141 (41%), Gaps = 30/141 (21%)

Query: 82  VHKVISGTPADRDGRLQKGDRILSINGK---SMKGLTHKESLAILKRGPPVEITLIKDG- 137
           V +V+ G+ + + G ++ GD I S+NGK   S   L  +  +A  + G  V++ L+++G 
Sbjct: 267 VSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSR--IATTEPGTKVKLGLLRNGK 323

Query: 138 ------------------AGLGFSLEGGKDSPFGDQPLT----VKKIFTGGCAEKNGQLK 175
                               +  +LEG   S    +       + ++  G  A + G L+
Sbjct: 324 PLEVEVTLDTSTSSSASAEMITPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAG-LQ 382

Query: 176 AGDEILTINNVPVTEMSRIEA 196
             D I+ +N   V  ++ +  
Sbjct: 383 KDDVIIGVNRDRVNSIAEMRK 403

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens} Length = 112

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 82  VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDG 137
           V +V   +P+ R G +Q GD I+ +NG+ +      E    +    P+ + + +  
Sbjct: 39  VQEVAPNSPSQRGG-IQDGDIIVKVNGRPLV--DSSELQEAVLTESPLLLEVRRGN 91

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Length = 451

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 34/145 (23%)

Query: 82  VHKVISGTPADRDGRLQKGDRILSINGK---SMKGLTHKESLAILKRGPPVEITLIKDG- 137
           V +V   +PA+  G L+ GD I  IN         +     +++L+ G  V+I + +D  
Sbjct: 286 VSQVNPNSPAELAG-LKAGDIITQINDTKITQATQVKTT--ISLLRVGSTVKIIVERDNK 342

Query: 138 ------------------AGLGFSLEGGKDSPFGDQP--------LTVKKIFTGGCAEKN 171
                                   L G     F  +         + V          + 
Sbjct: 343 PLTLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQESPPHGNVIGVQVVGASENSAGWRA 402

Query: 172 GQLKAGDEILTINNVPVTEMSRIEA 196
           G ++ GD I++ N  PVT++  ++ 
Sbjct: 403 G-IRPGDIIISANKKPVTDVKSLQT 426

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6 Length = 125

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 75  YESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH-KESLAILKRGPPVEITL 133
           ++   + +  V+ G+PA     L  G  I SING     LT    +L  +  G  + IT 
Sbjct: 22  HQPDGVQIDSVVPGSPAS--KVLTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITT 79

Query: 134 IKDG 137
            +  
Sbjct: 80  DQGT 83

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 72/490 (14%), Positives = 134/490 (27%), Gaps = 140/490 (28%)

Query: 21  QQELQQLIDESNQSLD-EGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE 79
           +Q L +L    N  +D   G       G + V++ V         V   +     +    
Sbjct: 141 RQALLELRPAKNVLIDGVLGS------GKTWVALDVC-LS---YKVQCKMDFKIFW---- 186

Query: 80  ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHK-----ESLAILKRGPPVEITLI 134
           + +                  + +L +    ++ L ++      S +       + I  I
Sbjct: 187 LNL------------KNCNSPETVLEM----LQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 135 KDGAGLGFSLEGGKDSPFGDQPLTV------KKI---FTGGCAEKNGQLKAGDEIL-TIN 184
           +         +  ++       L V       K    F   C           +IL T  
Sbjct: 231 QAELRRLLKSKPYENC------LLVLLNVQNAKAWNAFNLSC-----------KILLTTR 273

Query: 185 NVPVTE--MSRIEAWSLLKKLNDGTIQD------IKALGYDLNSL------GYPRTQDLN 230
              VT+   +       L   +     D      +K L      L        PR   L+
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--LS 331

Query: 231 ALGYPKTRDLNALEYIKTRDLNALEYIKTRDLNALRYPKTQDLNALEYPKTQDLNALGHP 290
            +       L   +  K  + + L  I    LN L   + + +    +     L+    P
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM----F---DRLSVF--P 382

Query: 291 K-----TQDLNAL-GHPKTQDLNALIQDLNALG-------------YDLNALGHPKTQDL 331
                 T  L+ +       D+  ++  L+                  +      K ++ 
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442

Query: 332 NALGYKILNALEYPKSQDLNALGYPKTQDLNVLEYPKTRDLNALRYPKTQDLNALGHPKT 391
            AL   I++    PK+ D + L  P   D     +        + +          H K 
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLI-PPYLDQYFYSH--------IGH----------HLKN 483

Query: 392 QDLNDTRFEYPKI-QDLNAL-------GYDLNALGHPKTQDLNDTRFEYPK-IQDLNALG 442
            +  +    +  +  D   L           NA G      L   +F Y   I D N   
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG-SILNTLQQLKF-YKPYICD-NDPK 540

Query: 443 YD--LNALGH 450
           Y+  +NA+  
Sbjct: 541 YERLVNAILD 550

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4 Length = 113

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 82  VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDG 137
           +HKVI G+PA R G L+ GD IL+I  + ++    ++    ++    + + + +  
Sbjct: 39  IHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRTQSQLAVQIRRGR 91

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A Length = 91

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 81  TVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGL 140
            +  V   + A   G LQ GDRI+ ++G+ +        L     G  + + + + G+ L
Sbjct: 7   VLENVQPNSAASXAG-LQAGDRIVXVDGQPLTQWVTFVMLVRDNPGXSLALEIERQGSPL 65

Query: 141 GFSL 144
             +L
Sbjct: 66  SLTL 69

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343} Length = 403

 Score = 47.1 bits (112), Expect = 9e-06
 Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 13/91 (14%)

Query: 61  PGNSVGITLAGGSD-YESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE- 118
           P      TL    D   +    +  V+ G+PA+  G LQ+G  I+ +NG  +      E 
Sbjct: 72  PSYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKVESEL 130

Query: 119 ----------SLAILKRGPPVEITLIKDGAG 139
                      +     G   E+T      G
Sbjct: 131 LQGSTRQLQIGVYKEVVGEDGEVTGGVVPIG 161

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A Length = 100

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 75  YESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH-KESLAILKRGPPVEITL 133
                + V  V    PA     L  GD I  I+G + K      + +   K G  V+I  
Sbjct: 4   VTYDGVYVMSVKDDVPAA--DVLHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKINY 61

Query: 134 IKDG 137
               
Sbjct: 62  KHGD 65

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 3nwu_A 2ytw_A 2joa_A Length = 332

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 82  VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDG 137
           + +VI  TPA+  G L++ D I+SING+S+   +  +   ++KR   + + + +  
Sbjct: 258 IIEVIPDTPAEAGG-LKENDVIISINGQSVV--SANDVSDVIKRESTLNMVVRRGN 310

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 Length = 325

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 82  VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDG 137
           +HKVI G+PA R G L+ GD IL+I  + ++    ++    ++    + + + +  
Sbjct: 260 IHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRTQSQLAVQIRRGR 312

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans} Length = 94

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 76  ESKEITVHKVISGTPADRDGRLQKGDRILSINGK---SMKGLTHKESLAILKRGPPVEIT 132
           E+K + V  V+   PA   GRL+ GDRI +I+G+   + + +     +   + G  V +T
Sbjct: 3   EAKGVYVMSVLPNMPAA--GRLEAGDRIAAIDGQPINTSEQIVSY--VREKQAGDRVRVT 58

Query: 133 LIKDG 137
            I+D 
Sbjct: 59  FIRDR 63

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis} Length = 91

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 80  ITVHKVISGTPADRDGRLQKGDRILSINGK---SMKGLTHKESLAILKRGPPVEITLIKD 136
           I    V+   PA   G+++ GD+I+S +GK   S + L     ++  K G  V + + ++
Sbjct: 3   IYASSVVENMPAK--GKIEVGDKIISADGKNYQSAEKLIDY--ISSKKAGDKVTLKIERE 58

Query: 137 G 137
            
Sbjct: 59  E 59

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score = 41.3 bits (96), Expect = 9e-05
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKN-GQLKAGDEILTINNVP 187
           + +    +    GFS+     S      + VK++     +  N   +  GD IL IN  P
Sbjct: 19  ISMPATTECR-RGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTP 77

Query: 188 VTEMSRIEAWSLLKKLNDGTIQ 209
           V  +   E    +K+    T+Q
Sbjct: 78  VRTLRVEEVEDAIKQ-TSQTLQ 98

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 66  GITLAGGSDYESKEITV---HKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLA 121
           G ++   S   +   TV            +    +  GDRIL ING  ++ L  +E   A
Sbjct: 30  GFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDA 89

Query: 122 ILKRGPPVEITLIKD 136
           I +    +++ +  D
Sbjct: 90  IKQTSQTLQLLIEHD 104

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} Length = 209

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 23/128 (17%), Positives = 38/128 (29%), Gaps = 19/128 (14%)

Query: 82  VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHK-ESLAILKRGPPVEITLIKDGAG- 139
           V +V   +P  R G     D I+SING  +       + L       PV++ +       
Sbjct: 20  VLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLE 79

Query: 140 -----------------LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILT 182
                            LG S+         +    V ++ +   A   G     D I+ 
Sbjct: 80  LRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIG 139

Query: 183 INNVPVTE 190
            + V    
Sbjct: 140 ADTVMNES 147

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR} Length = 597

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 80  ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDG 137
           + V  V     A   G L  GD+I++I+       + K  L     G  V I   +  
Sbjct: 498 LDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATEQSVKRILERYIPGDTVTIHAFRRD 554

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Length = 1045

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 16/121 (13%), Positives = 32/121 (26%), Gaps = 3/121 (2%)

Query: 17  SLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYE 76
              ++ +L  +I E      E         G +                 +        +
Sbjct: 698 LCKTRYDLSNVIVEM---QGEYRTSHSYEMGGTFTDKDPFRSGRIACDFKLDGDHYVVAK 754

Query: 77  SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKD 136
           +           +P    G    G  I  I+G+++   ++   +   K G    I L   
Sbjct: 755 AYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGSNIYRVLSEKAGTSARIRLSGK 814

Query: 137 G 137
           G
Sbjct: 815 G 815

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A Length = 95

 Score = 38.0 bits (88), Expect = 7e-04
 Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 82  VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRG-PPVEITLIKDGAG 139
           V ++ + + A     +  G  + +++G             + K G     IT+   G+ 
Sbjct: 6   VGEIAANSIAAEAQ-IAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFGSD 63

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A Length = 318

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 82  VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH-KESLAILKRGPPVEITLIKDG 137
           V++V    PA   G +Q  D I+S++ K         + +A ++ G  + + +++D 
Sbjct: 248 VNEVSPDGPAANAG-IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDD 303

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	548
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.88
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.86
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.83
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.82
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.78
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	99.76
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	99.68
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.67
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	99.62
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	99.58
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	99.55
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	99.36
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.33
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.31
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.3
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.28
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.28
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	99.28
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.27
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.27
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.27
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.27
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.27
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.27
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.26
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.26
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.26
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.26
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.25
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.25
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.25
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.24
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.24
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.24
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.24
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.23
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.23
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.23
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.23
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.22
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.22
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.22
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.22
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.22
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.21
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.21
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.21
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.21
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.21
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.21
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.21
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.2
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.2
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.2
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.2
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.2
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.2
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.2
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.19
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.19
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.19
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.18
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.18
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.18
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.18
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.17
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.17
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.17
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.17
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.17
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.17
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	99.17
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.17
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.17
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.16
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.16
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.16
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.16
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.16
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.16
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.16
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.16
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.16
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.16
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.16
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.15
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.15
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.15
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	99.15
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.15
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.15
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	99.15
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.15
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.14
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.14
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.14
2ego_A	96	General receptor for phosphoinositides 1- associat	99.14
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.14
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.14
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.13
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.13
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.13
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.13
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.13
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.12
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.12
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.12
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.12
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	99.11
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.11
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.11
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.11
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.11
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.11
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.1
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.1
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.1
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.1
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.1
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.1
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.09
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.09
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.09
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.09
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.09
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.09
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	99.09
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.09
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.09
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.09
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.09
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	99.08
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.08
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.07
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.07
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.07
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.07
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.07
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	99.07
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.07
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.07
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.06
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.06
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.06
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.06
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.06
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.06
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.06
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.06
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.06
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.05
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	99.05
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.05
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.05
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.04
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.04
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.04
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.04
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.04
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.04
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.04
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	99.04
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.04
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.03
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.03
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.03
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.02
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.02
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.02
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.02
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.01
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	99.01
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.01
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.01
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.0
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.0
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.0
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.0
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.0
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.0
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.0
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.0
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	99.0
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.0
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.0
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.0
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.0
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	98.99
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	98.99
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	98.99
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	98.98
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	98.98
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	98.98
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	98.98
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	98.97
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	98.97
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	98.97
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	98.97
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	98.97
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	98.97
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	98.96
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	98.96
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	98.96
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.96
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	98.96
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	98.96
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	98.96
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	98.95
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	98.95
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	98.95
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	98.95
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	98.95
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	98.95
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	98.94
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	98.94
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	98.94
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	98.94
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	98.93
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	98.93
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	98.93
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	98.93
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	98.93
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.93
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	98.93
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	98.93
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	98.93
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	98.92
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	98.92
4amh_A	106	Disks large homolog 1; permutation, protein foldin	98.92
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	98.92
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	98.91
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	98.91
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	98.91
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	98.91
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	98.91
2ego_A	96	General receptor for phosphoinositides 1- associat	98.91
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	98.91
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	98.91
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	98.9
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	98.9
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	98.9
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	98.9
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	98.89
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	98.88
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	98.88
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.88
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	98.88
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	98.88
2d90_A	102	PDZ domain containing protein 1; structural genomi	98.88
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	98.87
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	98.87
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	98.87
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	98.87
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	98.86
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	98.86
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	98.86
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	98.86
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	98.85
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	98.85
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	98.85
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	98.84
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	98.84
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	98.84
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	98.84
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	98.84
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	98.84
3khf_A	99	Microtubule-associated serine/threonine-protein ki	98.83
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	98.82
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	98.82
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	98.82
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	98.8
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	98.79
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	98.79
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	98.79
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	98.79
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	98.78
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.78
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	98.78
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	98.78
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	98.78
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	98.78
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	98.77
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	98.77
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	98.77
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	98.77
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	98.76
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	98.76
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	98.75
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	98.75
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	98.75
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	98.23
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	98.75
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	98.75
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	98.74
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	98.74
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	98.74
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.74
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	98.73
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	98.72
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	98.7
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	98.69
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	98.69
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	98.68
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	98.68
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	98.68
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	98.67
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	98.67
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	98.67
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	98.66
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	98.65
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	98.65
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	98.64
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.64
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	98.64
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.62
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	98.62
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	98.62
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	98.61
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	98.6
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	98.59
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	98.59
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	98.57
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.56
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.56
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.55
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.55
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	98.53
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	98.52
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	98.52
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	98.51
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	98.51
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.5
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	98.5
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.48
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	98.48
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	97.84
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.45
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.44
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	98.43
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	98.42
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.39
4fgm_A	597	Aminopeptidase N family protein; structural genomi	98.37
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	98.37
3k50_A	403	Putative S41 protease; structural genomics, joint	98.36
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.33
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	98.3
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	98.28
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	98.24
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.22
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	98.17
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	98.08
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.04
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	98.01
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.0
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	97.94
2kl1_A	94	YLBL protein; structure genomics, structural genom	97.93
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	97.92
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	97.91
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	97.9
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	97.9
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	97.86
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	97.84
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.83
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	97.79
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	97.79
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	97.72
3k50_A	403	Putative S41 protease; structural genomics, joint	97.53
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	97.46
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	97.45
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	97.42
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	97.34
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	97.34
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	97.26
4fgm_A	597	Aminopeptidase N family protein; structural genomi	97.25
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.18
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	96.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	96.09
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	93.84

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.88  E-value=2.1e-21  Score=180.96  Aligned_cols=167  Identities=33%  Similarity=0.549  Sum_probs=136.3

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCC----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL  123 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~----~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l  123 (548)
                      ..+.+.+.+.+.  ..+|||++.++.+..    ..+++|..|.|+|||+++|+|++||+|++|||+++.++++..++..+
T Consensus         3 ~~~~~~v~l~~~--~~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~   80 (196)
T 3gsl_A            3 SMEYEEITLERG--NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEAL   80 (196)
T ss_dssp             CEEEEEEEEECB--TTBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CcEEEEEEEEEC--CCCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            346788999988  688999999987642    46899999999999999999999999999999999999988866444


Q ss_pred             h-CCCCeEEEEEecC---------------cceeEEEecCCCCC--CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECC
Q psy6405         124 K-RGPPVEITLIKDG---------------AGLGFSLEGGKDSP--FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN  185 (548)
Q Consensus       124 k-~g~~VtVtV~RdG---------------kgLGfSItgg~~s~--lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNG  185 (548)
                      + .+..+.++|.|.+               .++|+++.......  ....+++|..|.++|+|+++|+|++||+|++|||
T Consensus        81 ~~~g~~v~l~v~r~~~~~~~~~~v~l~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng  160 (196)
T 3gsl_A           81 KEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS  160 (196)
T ss_dssp             HTSCSEEEEEEEEECCCCEEEEEEEEEEBTTBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETT
T ss_pred             HhCCCcEEEEEEecCCCccccEEEEEecCCCCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECC
Confidence            4 4677888887754               23556665433221  1124789999999999999999999999999999


Q ss_pred             EEcCCCCHHHHHHHHHHcCCCceeEEEEeccc
Q psy6405         186 VPVTEMSRIEAWSLLKKLNDGTIQDIKALGYD  217 (548)
Q Consensus       186 vsV~~~t~~EavelLrs~~g~~V~LlV~RilD  217 (548)
                      +++.++++.+++++++.. +..+.+++.|...
T Consensus       161 ~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~~  191 (196)
T 3gsl_A          161 VGLEDVMHEDAVAALKNT-YDVVYLKVAKPSN  191 (196)
T ss_dssp             EECSSCBHHHHHHHHHSC-CEEEEEEEEEESC
T ss_pred             CcCCCCCHHHHHHHHHcC-CCeEEEEEeCCCC
Confidence            999999999999999875 6788888888654

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.86  E-value=1.8e-20  Score=177.49  Aligned_cols=167  Identities=17%  Similarity=0.278  Sum_probs=133.2

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCC-CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccC--ccHHHHHHHhh
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYES-KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG--LTHKESLAILK  124 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~-~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~--~s~~~aV~~lk  124 (548)
                      .++...+.+.+.  ..+|||+++++.+... .+++|..|.++|||+++|+|++||+|++|||+++.+  +++.+++..++
T Consensus        16 ~~~~~~v~~~~~--~~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~   93 (206)
T 3r0h_A           16 PNKKILIELKVE--KKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFH   93 (206)
T ss_dssp             TTSCEEEEEECT--TSCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHH
T ss_pred             CCCEEEEEEEeC--CCCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHH
Confidence            456778889887  6999999998876533 579999999999999998899999999999999999  77777665554


Q ss_pred             -CCCC-eEEEEEecCcce--eEEEe--cCCCCCCC------CCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCC
Q psy6405         125 -RGPP-VEITLIKDGAGL--GFSLE--GGKDSPFG------DQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMS  192 (548)
Q Consensus       125 -~g~~-VtVtV~RdGkgL--GfSIt--gg~~s~lG------~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t  192 (548)
                       .+.. +.++|.|.+...  .+++.  ......+|      ..+++|.+|.++|+|+++|+|+.||+|++|||+++.+++
T Consensus        94 ~~~~~~v~l~v~R~~~~~~~~~~v~l~~~~~~~lG~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~  173 (206)
T 3r0h_A           94 TTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLP  173 (206)
T ss_dssp             SCCSSEEEEEEECCSSCCEEEEEEEEECCTTCCCCEEEEECSSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCC
T ss_pred             hcCCCceEEEEEecccCCCcEEEEEEecCCCCccCeEEEcCCceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC
Confidence             3455 888888866432  22222  11111222      136899999999999999889999999999999999999


Q ss_pred             HHHHHHHHHHcCCCceeEEEEeccc
Q psy6405         193 RIEAWSLLKKLNDGTIQDIKALGYD  217 (548)
Q Consensus       193 ~~EavelLrs~~g~~V~LlV~RilD  217 (548)
                      +.+++.+++.. +..+.+++.|...
T Consensus       174 ~~~~~~~l~~~-~~~v~L~V~R~~~  197 (206)
T 3r0h_A          174 FQVCYALFKGA-NGKVSMEVTRPKP  197 (206)
T ss_dssp             HHHHHHHHHTC-CSEEEEEEEEECC
T ss_pred             HHHHHHHHHcC-CCeEEEEEEeCCC
Confidence            99999999876 5688999988644

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.83  E-value=3.2e-19  Score=168.90  Aligned_cols=166  Identities=26%  Similarity=0.448  Sum_probs=132.2

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhc-CCCCCCCEEEEECCeeccCccHHHHHHHhh-C
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRD-GRLQKGDRILSINGKSMKGLTHKESLAILK-R  125 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqA-GrLq~GDrILaINGv~V~~~s~~~aV~~lk-~  125 (548)
                      ...++.+.+.+. ...+|||++.++.+. ..+++|..|.++|||+++ | |++||+|++|||+++.++++.+++..+. .
T Consensus         5 ~~~~~~v~l~~~-~~~~lG~~i~~~~~~-~~~~~V~~v~~~spA~~agg-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   81 (200)
T 2qt5_A            5 FKGSTVVELMKK-EGTTLGLTVSGGIDK-DGKPRVSNLRQGGIAARSDQ-LDVGDYIKAVNGINLAKFRHDEIISLLKNV   81 (200)
T ss_dssp             CEEEEEEEEECC-TTCCCCEEEECCTTS-SSCSEEEEECTTSHHHHTTS-CCTTCEEEEETTEECTTSCHHHHHHHHHTC
T ss_pred             cCCCEEEEEEeC-CCCCCCEEEecccCC-CCCeEEEEECCCChHHhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            345688888887 488999999987654 357899999999999999 7 9999999999999999998888665443 4


Q ss_pred             CCCeEEEEEecCc-----------------------ceeEEEecCCCCC-CCCCCeEEEEeccCChhhhcCCCCCCCEEE
Q psy6405         126 GPPVEITLIKDGA-----------------------GLGFSLEGGKDSP-FGDQPLTVKKIFTGGCAEKNGQLKAGDEIL  181 (548)
Q Consensus       126 g~~VtVtV~RdGk-----------------------gLGfSItgg~~s~-lG~~gI~VssV~pgSpAekaGrLq~GDrIL  181 (548)
                      +..+.++|.|++.                       .+|+.+..+.... ....+++|..|.++|+|+++|+|++||+|+
T Consensus        82 g~~v~l~v~R~~~~~~~~g~~~~~~~~~v~l~~~~~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~  161 (200)
T 2qt5_A           82 GERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLL  161 (200)
T ss_dssp             CSEEEEEEEEECCCCCCCCSSEEEEEEEEEEECBTTBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEE
T ss_pred             CCeEEEEEeccCCCcccCCCccceeEEEEEEecCCCCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEE
Confidence            6678888877542                       1333333221110 002368999999999999999999999999


Q ss_pred             EECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccc
Q psy6405         182 TINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYD  217 (548)
Q Consensus       182 aVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilD  217 (548)
                      +|||.++.++++.++.++++. .+..+.+.+.|...
T Consensus       162 ~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~  196 (200)
T 2qt5_A          162 SVDGIRLLGTTHAEAMSILKQ-CGQEATLLIEYDVS  196 (200)
T ss_dssp             EETTEECTTCCHHHHHHHHHT-TCSEEEEEEEEEEE
T ss_pred             EECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCc
Confidence            999999999999999999998 57889999988643

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.82  E-value=5.2e-19  Score=167.45  Aligned_cols=166  Identities=28%  Similarity=0.397  Sum_probs=131.9

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCC---CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDY---ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-  124 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~---~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-  124 (548)
                      .+.++|.+.+. ++.+|||++.++.+.   ...+++|..|.++|||+++|+|++||+|++|||+++.++++.++...+. 
T Consensus         5 ~~~~~v~l~~~-~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~   83 (196)
T 1p1d_A            5 TETTEVVLTAD-PVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRD   83 (196)
T ss_dssp             CEEEEEEEECB-TTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHT
T ss_pred             cEEEEEEEEeC-CCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            45788899887 479999999988543   2357899999999999999999999999999999999765555444333 


Q ss_pred             --CCCCeEEEEEecCc--------ceeEEEecCCCCCCC-----------CCCeEEEEeccCChhhhcCCCCCCCEEEEE
Q psy6405         125 --RGPPVEITLIKDGA--------GLGFSLEGGKDSPFG-----------DQPLTVKKIFTGGCAEKNGQLKAGDEILTI  183 (548)
Q Consensus       125 --~g~~VtVtV~RdGk--------gLGfSItgg~~s~lG-----------~~gI~VssV~pgSpAekaGrLq~GDrILaV  183 (548)
                        ++..+.++|.|++.        ...+.+.......+|           ..+++|..|.++|||+++|+|++||+|++|
T Consensus        84 ~~~g~~v~l~v~R~~~~~~~~~~~~~~v~l~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~v  163 (196)
T 1p1d_A           84 SSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAI  163 (196)
T ss_dssp             CCSSSEEEEEEEECSCSCCBCCSSCEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEE
T ss_pred             CCCCCeEEEEEEecCCCCCCCCCCcEEEEecCCCCCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEE
Confidence              36778999998773        233333321111111           247899999999999999999999999999


Q ss_pred             CCEEcCCCCHHHHHHHHHHcCCCceeEEEEecc
Q psy6405         184 NNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGY  216 (548)
Q Consensus       184 NGvsV~~~t~~EavelLrs~~g~~V~LlV~Ril  216 (548)
                      ||.++.++++.++.++++.. +..+.+.+.|..
T Consensus       164 ng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~  195 (196)
T 1p1d_A          164 DNIRLDSCSMEDAVQILQQC-EDLVKLKIRKDE  195 (196)
T ss_dssp             TTEEGGGCCHHHHHHHHHHC-TTCEEEEEECCC
T ss_pred             CCEECCCCCHHHHHHHHHhC-CCEEEEEEEeCC
Confidence            99999998899999999987 788999998864

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.78  E-value=4.1e-18  Score=191.37  Aligned_cols=168  Identities=33%  Similarity=0.540  Sum_probs=137.4

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCC----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL  123 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~----~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l  123 (548)
                      ..++++|++.+.  ..+|||+|.+|.+..    ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..+
T Consensus        57 ~~~~~~v~l~k~--~~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l  134 (721)
T 2xkx_A           57 EMEYEEITLERG--NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEAL  134 (721)
T ss_pred             CceEEEEEEEeC--CCCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHh
Confidence            567789999998  479999999987642    46899999999999999999999999999999999999998877555


Q ss_pred             h-CCCCeEEEEEecC---------------cceeEEEecCCCCC--CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECC
Q psy6405         124 K-RGPPVEITLIKDG---------------AGLGFSLEGGKDSP--FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN  185 (548)
Q Consensus       124 k-~g~~VtVtV~RdG---------------kgLGfSItgg~~s~--lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNG  185 (548)
                      + .+..+.++|.|.+               .++||++..+....  .+..+++|..|.++|+|+++|+|++||+|++|||
T Consensus       135 ~~~g~~v~l~v~R~~~~~~~~~~v~l~k~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng  214 (721)
T 2xkx_A          135 KEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS  214 (721)
T ss_pred             hccccccceEEEecccccccceeeeeeeecCCCceeeccCCCccccCCCCceEEEEeCCCCchhhcCCCCCCCEEEEECC
Confidence            3 4566777776654               34556555432211  1134799999999999999999999999999999


Q ss_pred             EEcCCCCHHHHHHHHHHcCCCceeEEEEecccc
Q psy6405         186 VPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDL  218 (548)
Q Consensus       186 vsV~~~t~~EavelLrs~~g~~V~LlV~RilDL  218 (548)
                      +++.++++.+++.+++.. +..+.++|.|....
T Consensus       215 ~~v~~~~~~~~~~~l~~~-~~~v~l~V~R~g~~  246 (721)
T 2xkx_A          215 VGLEDVMHEDAVAALKNT-YDVVYLKVAKPSNA  246 (721)
T ss_pred             eeCCCCCHHHHHHHHHcC-CCeEEEEEEeCCcc
Confidence            999999999999999876 66889999887643

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=99.76  E-value=6.2e-17  Score=149.63  Aligned_cols=156  Identities=21%  Similarity=0.290  Sum_probs=123.1

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHH--HHHhhCC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES--LAILKRG  126 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~a--V~~lk~g  126 (548)
                      .+++.|.+.|. ...+|||++...    ..+++|..|.++|||+++| |++||+|++|||+++.++++...  +.....+
T Consensus         3 ~~~r~v~l~k~-~~~~lG~~~~~~----~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~   76 (166)
T 1w9e_A            3 MDPREVILCKD-QDGKIGLRLKSI----DNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFG   76 (166)
T ss_dssp             CCCEEEEEECC-TTSCCSEEEEEE----TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             CCCEEEEEEeC-CCCcEeEEEEeC----CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCC
Confidence            46789999987 478999999863    2589999999999999999 99999999999999999988333  3333366


Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCCCC---CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPFGD---QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~lG~---~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      ..+.++|.|.+....+++.......+|.   .+ +|..|.++|+|+++| |+.||+|++|||.++.++.+.++.-.++..
T Consensus        77 ~~v~l~vr~~~~~~~v~l~~~~~~~lG~~~~~g-~v~~v~~~s~a~~aG-l~~GD~I~~ing~~v~~~~~~~v~~~v~r~  154 (166)
T 1w9e_A           77 EKITMTIRDRPFERTITMHKDSTGHVGFIFKNG-KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTS  154 (166)
T ss_dssp             SEEEEEEECCTTCEEEEEECCTTSCCSEEEETT-EEEEECTTSHHHHTT-CCSSEEEEEETTEECTTCCHHHHHHHHHHS
T ss_pred             CEEEEEEEcCCCcEEEEEecCCCCcEeEEEeCC-EEEEEccCCHHHHcC-CCCCCEEEEECCEECCCCChHHHHHHHhhC
Confidence            7889999544477778877433233332   13 788999999999999 999999999999999999988877777665


Q ss_pred             CCCceeEEEE
Q psy6405         204 NDGTIQDIKA  213 (548)
Q Consensus       204 ~g~~V~LlV~  213 (548)
                       +..+.+.+.
T Consensus       155 -g~~~~l~v~  163 (166)
T 1w9e_A          155 -GTVVTITIM  163 (166)
T ss_dssp             -CSEEEEEEE
T ss_pred             -CCEEEEEEE
Confidence             455555443

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=99.68  E-value=1.8e-17  Score=173.97  Aligned_cols=163  Identities=23%  Similarity=0.364  Sum_probs=73.6

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCC-CCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh--
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSD-YESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK--  124 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d-~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk--  124 (548)
                      ....+.|.+.+. ++++|||++.+... ....+++|..|.++|||+++|+|++||+|++|||+++.+|++.+++..++  
T Consensus       202 ~~~~~~V~i~k~-~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~  280 (388)
T 3suz_A          202 SENCKELQLEKH-KGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGL  280 (388)
T ss_dssp             SSCCEEEEECCC-SSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTC
T ss_pred             cccceEEEEECC-CCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhc
Confidence            456788999987 37899999986321 12235899999999999999999999999999999999998776654443  


Q ss_pred             -CCCCeEEEEEecCcceeEEEecCC-CCCCCC--CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy6405         125 -RGPPVEITLIKDGAGLGFSLEGGK-DSPFGD--QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLL  200 (548)
Q Consensus       125 -~g~~VtVtV~RdGkgLGfSItgg~-~s~lG~--~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelL  200 (548)
                       .+..+.++|.|.+....+.+.... ...+|.  .+.+|..|.++|+|+++| |++||+|++|||+++.++++.++++++
T Consensus       281 ~~~~~v~l~v~r~~~~~~v~l~~~~~~~~lG~~i~~g~I~~V~~gs~A~~aG-L~~GD~Il~VNg~~v~~~s~~~~~~~l  359 (388)
T 3suz_A          281 KNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQAL  359 (388)
T ss_dssp             TTCSCEEEEEEECCSCC---------------------------------------------------------------
T ss_pred             cCCCccccccccccccceeeEeecCCCCccceEEecCEEEEeecCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence             455699999998777666663221 112232  234788999999999999 999999999999999999999999999


Q ss_pred             HHcCCCceeEEEE
Q psy6405         201 KKLNDGTIQDIKA  213 (548)
Q Consensus       201 rs~~g~~V~LlV~  213 (548)
                      +.. +..+.+.+.
T Consensus       360 ~~~-~~~v~L~V~  371 (388)
T 3suz_A          360 SNS-VGEIHMKTM  371 (388)
T ss_dssp             -------------
T ss_pred             HhC-CCeEEEEEE
Confidence            886 556666653

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.67  E-value=1.4e-15  Score=170.92  Aligned_cols=160  Identities=32%  Similarity=0.527  Sum_probs=126.9

Q ss_pred             eEEEEEeeCCCCCceEEEEEeCCCCC----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-C
Q psy6405          51 VSVVVLHRDLPGNSVGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-R  125 (548)
Q Consensus        51 ~~tV~L~Kd~~~~GLGfsIagG~d~~----~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~  125 (548)
                      ..++.+.+.  ..+|||++.++.+..    ..+++|..|.++|||+++|+|++||+|++|||++|.++++.+++..++ .
T Consensus       155 ~~~v~l~k~--~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~  232 (721)
T 2xkx_A          155 VMEIKLIKG--PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT  232 (721)
T ss_pred             ceeeeeeee--cCCCceeeccCCCccccCCCCceEEEEeCCCCchhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHcC
Confidence            456777765  467999998765321    358999999999999999999999999999999999998877665554 4


Q ss_pred             CCCeEEEEEecCcce-----------------------------------------------------------------
Q psy6405         126 GPPVEITLIKDGAGL-----------------------------------------------------------------  140 (548)
Q Consensus       126 g~~VtVtV~RdGkgL-----------------------------------------------------------------  140 (548)
                      +..+.++|.|++...                                                                 
T Consensus       233 ~~~v~l~V~R~g~~~~~~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~  312 (721)
T 2xkx_A          233 YDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIV  312 (721)
T ss_pred             CCeEEEEEEeCCcccccCCCCCCCcccCCCCCcccccCCcccccccccccCCCCCCcccCCcccccccccccccceEEEE
Confidence            567788887765421                                                                 


Q ss_pred             --------eEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEE
Q psy6405         141 --------GFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIK  212 (548)
Q Consensus       141 --------GfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV  212 (548)
                              ||++.++..    ..+++|..|.++|+|+++|+|++||+|++|||+++.++++.+++++|+.. +..+.+++
T Consensus       313 l~~~~~~lG~~i~~~~~----~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~-~~~v~L~v  387 (721)
T 2xkx_A          313 IHRGSTGLGFNIVGGED----GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA-GQTVTIIA  387 (721)
T ss_pred             EEECCCCccEEEeccCC----CCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhc-CCeEEEEE
Confidence                    111111100    13789999999999999999999999999999999999999999999986 66788888


Q ss_pred             Eeccc
Q psy6405         213 ALGYD  217 (548)
Q Consensus       213 ~RilD  217 (548)
                      .|..+
T Consensus       388 ~r~~~  392 (721)
T 2xkx_A          388 QYKPE  392 (721)
T ss_pred             EeCch
Confidence            87653

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=99.62  E-value=4.6e-15  Score=142.74  Aligned_cols=134  Identities=20%  Similarity=0.216  Sum_probs=107.1

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCC-CEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcc--eeEEEecCCC----
Q psy6405          78 KEITVHKVISGTPADRDGRLQKG-DRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAG--LGFSLEGGKD----  149 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~G-DrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkg--LGfSItgg~~----  149 (548)
                      .+++|..|.++|||+++| |++| |+|++|||+++.++++.. .+.....+..+.++|.|.+..  ..+++.+...    
T Consensus        16 ~G~~V~~V~~~SpA~~AG-L~~G~D~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~~~~v~l~p~~~~~~~   94 (209)
T 3rle_A           16 EGYHVLRVQENSPGHRAG-LEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRETSVTPSNLWGGQ   94 (209)
T ss_dssp             EEEEEEEECTTSHHHHTT-CCTTTEEEEEETTEECCSSSSHHHHHHHHTTTSCEEEEEEETTTCCEEEEEECCCSSSSSS
T ss_pred             CEEEEEEECCCCHHHHCC-CCcCCeEEEEECCEECcCHHHHHHHHHhcCCCCEEEEEEEecCCceEEEEEEccccccccc
Confidence            579999999999999999 9999 999999999999988755 344455688999999986543  3444432210    


Q ss_pred             CCCCC------------CCeEEEEeccCChhhhcCCCCC-CCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEecc
Q psy6405         150 SPFGD------------QPLTVKKIFTGGCAEKNGQLKA-GDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGY  216 (548)
Q Consensus       150 s~lG~------------~gI~VssV~pgSpAekaGrLq~-GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ril  216 (548)
                      ..+|.            .+++|..|.++|||+++| |++ ||+|++||+. +.++.  ++.++++..++..+.+.+.|..
T Consensus        95 ~~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aG-l~~~GD~I~~ing~-v~~~~--~l~~~l~~~~g~~v~l~v~r~~  170 (209)
T 3rle_A           95 GLLGVSIRFCSFDGANENVWHVLEVESNSPAALAG-LRPHSDYIIGADTV-MNESE--DLFSLIETHEAKPLKLYVYNTD  170 (209)
T ss_dssp             SSSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHT-CCTTTEEEEEESSC-CCSSS--CHHHHHHHTTTSCEEEEEEETT
T ss_pred             CccceEEeecChhHccccceEEEEeCCCChHHHCC-CCCCCCEEEECCCE-eCCHH--HHHHHHHhCCCCeEEEEEEECC
Confidence            11111            367999999999999999 999 9999999997 88777  7888898877888999998853

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=99.58  E-value=2e-14  Score=152.80  Aligned_cols=135  Identities=22%  Similarity=0.371  Sum_probs=111.6

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHH-HHhhCCCCeEEEEEecCcceeEEEecCCCCC-----
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL-AILKRGPPVEITLIKDGAGLGFSLEGGKDSP-----  151 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV-~~lk~g~~VtVtV~RdGkgLGfSItgg~~s~-----  151 (548)
                      .+++|..|.++|||+++| |++||+|++|||+++.++.+...+ ....++..+.++|.|+++...++++......     
T Consensus       263 ~G~~V~~V~~~spA~~aG-L~~GD~I~~vnG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~~  341 (436)
T 4a8c_A          263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASA  341 (436)
T ss_pred             cceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCCCcccccc
Confidence            579999999999999999 999999999999999999877643 3445688999999999888777775432110     


Q ss_pred             ----CC--------------CCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEE
Q psy6405         152 ----FG--------------DQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKA  213 (548)
Q Consensus       152 ----lG--------------~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~  213 (548)
                          .+              ..+++|..|.++|||+++| |++||+|++|||+++.++.  ++.++++.. ...+.+.+.
T Consensus       342 ~~~~~gl~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~--~~~~~l~~~-~~~v~l~v~  417 (436)
T 4a8c_A          342 EMITPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSIA--EMRKVLAAK-PAIIALQIV  417 (436)
T ss_pred             cccccCceeeecccccccCCCCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCHH--HHHHHHHhC-CCeEEEEEE
Confidence                00              1368999999999999999 9999999999999998765  888999885 448899998


Q ss_pred             eccc
Q psy6405         214 LGYD  217 (548)
Q Consensus       214 RilD  217 (548)
                      |...
T Consensus       418 R~g~  421 (436)
T 4a8c_A          418 RGNE  421 (436)
T ss_pred             ECCE
Confidence            8754

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=99.55  E-value=2.4e-14  Score=153.11  Aligned_cols=135  Identities=22%  Similarity=0.320  Sum_probs=111.3

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHH-HHHhhCCCCeEEEEEecCcceeEEEecCCCC------
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES-LAILKRGPPVEITLIKDGAGLGFSLEGGKDS------  150 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~a-V~~lk~g~~VtVtV~RdGkgLGfSItgg~~s------  150 (548)
                      .+++|..|.++|||+++| |++||+|++|||++|.++.+... +....++..+.|+|.|+++...++++.....      
T Consensus       282 ~G~~V~~V~~~spA~~aG-L~~GDvI~~vnG~~v~~~~~l~~~l~~~~~g~~v~l~V~R~g~~~~~~v~l~~~~~~~~~~  360 (451)
T 3pv2_A          282 QGALVSQVNPNSPAELAG-LKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKPLTLSAVVTDIKSHEQKL  360 (451)
T ss_dssp             CCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECBCHHHHHHHH
T ss_pred             ceEEEEecCCCChHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEccCCcccccc
Confidence            589999999999999999 99999999999999999987764 3444678899999999988877776543211      


Q ss_pred             ------CCC---------------CCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCcee
Q psy6405         151 ------PFG---------------DQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQ  209 (548)
Q Consensus       151 ------~lG---------------~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~  209 (548)
                            ..|               ..+++|..|.++|||+++| |++||+|++|||+++.++.  ++.++++. .+..+.
T Consensus       361 ~~~~~~~~G~~l~~~~~~~~~~~~~~Gv~V~~V~~gspA~~aG-L~~GD~I~~Vng~~v~~~~--~~~~~l~~-~~~~v~  436 (451)
T 3pv2_A          361 QSNNPFLYGLALRAFEQESPPHGNVIGVQVVGASENSAGWRAG-IRPGDIIISANKKPVTDVK--SLQTIAQE-KKKELL  436 (451)
T ss_dssp             HHHSTTTTTEEEEEEEEECTTSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSHH--HHHHHTTS-SCSCEE
T ss_pred             ccccccccccccccCChhHhcccCCCceEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCHH--HHHHHHhc-CCCeEE
Confidence                  011               1257899999999999999 9999999999999998764  88888887 467889


Q ss_pred             EEEEeccc
Q psy6405         210 DIKALGYD  217 (548)
Q Consensus       210 LlV~RilD  217 (548)
                      +.+.|...
T Consensus       437 l~v~R~g~  444 (451)
T 3pv2_A          437 VQVLRGPG  444 (451)
T ss_dssp             EEEEETTE
T ss_pred             EEEEECCE
Confidence            99988654

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=99.36  E-value=1.1e-13  Score=147.87  Aligned_cols=135  Identities=27%  Similarity=0.391  Sum_probs=56.2

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHH-HHhhCCCCeEEEEEecCcceeEEEecCCCC------
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL-AILKRGPPVEITLIKDGAGLGFSLEGGKDS------  150 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV-~~lk~g~~VtVtV~RdGkgLGfSItgg~~s------  150 (548)
                      .+++|..|.++|||+++| |++||+|++|||+++.++.+.... ....++..+.|+|.|+++...++++.....      
T Consensus       286 ~G~~V~~V~~gspA~~AG-L~~GDvI~~inG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~~~~  364 (448)
T 1ky9_A          286 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDS  364 (448)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSSHHHHHHTTSSBTTCCCEEEEESSSCEEECCCC-----------
T ss_pred             CceEEEEeccCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEecCCCccccc
Confidence            478999999999999999 999999999999999999766533 333568899999999887766555432110      


Q ss_pred             ------CCC--------CCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEecc
Q psy6405         151 ------PFG--------DQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGY  216 (548)
Q Consensus       151 ------~lG--------~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ril  216 (548)
                            .+|        ..+++|..|.++|||+++| |+.||+|++|||+++.++.  ++.++++..++ .+.+.+.|..
T Consensus       365 ~~~~~~~~G~~l~~~~~~~gv~V~~V~~gspA~~aG-L~~GDiI~~vng~~v~~~~--~l~~~l~~~~~-~v~l~v~R~g  440 (448)
T 1ky9_A          365 SSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKNIA--ELRKVLDSKPS-VLALNIQRGD  440 (448)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccceEeeccCCCCeEEEEEecCCCHHHHcC-CCCCCEEEEECCEECCCHH--HHHHHHHcCCC-eEEEEEEECC
Confidence                  011        1357899999999999999 9999999999999998765  78888887644 7788888765


Q ss_pred             c
Q psy6405         217 D  217 (548)
Q Consensus       217 D  217 (548)
                      .
T Consensus       441 ~  441 (448)
T 1ky9_A          441 S  441 (448)
T ss_dssp             -
T ss_pred             E
Confidence            4

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.33  E-value=1.3e-11  Score=104.02  Aligned_cols=90  Identities=31%  Similarity=0.534  Sum_probs=76.0

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGP  127 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~  127 (548)
                      ++.++|.+.+.  ..+|||++.++.+....+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..+. .+.
T Consensus         3 g~~~~v~l~~~--~~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   80 (98)
T 2opg_A            3 GCETTIEISKG--RTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQ   80 (98)
T ss_dssp             CEEEEEEEECB--TTBTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCS
T ss_pred             CCEEEEEEEEC--CCcccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            56788999987  689999999887654468999999999999999999999999999999999998777665554 456


Q ss_pred             CeEEEEEecCcce
Q psy6405         128 PVEITLIKDGAGL  140 (548)
Q Consensus       128 ~VtVtV~RdGkgL  140 (548)
                      .+.++|.|++...
T Consensus        81 ~v~l~v~R~~~~~   93 (98)
T 2opg_A           81 RVRLTLYRDEAPY   93 (98)
T ss_dssp             EEEEEEEECSSCC
T ss_pred             eEEEEEEcCCCCC
Confidence            7889999877654

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.31  E-value=1.3e-11  Score=103.71  Aligned_cols=87  Identities=32%  Similarity=0.541  Sum_probs=73.9

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCC
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPP  128 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~  128 (548)
                      +.+.|.|.|..++.+|||++.++.+  ..+++|..|.++|||+++|+|++||+|++|||.++.++++.+++..+. .+..
T Consensus         3 ~~~~v~l~k~~~~~~lG~~~~~~~~--~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~   80 (95)
T 2vwr_A            3 EILQVALHKRDSGEQLGIKLVRRTD--EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGER   80 (95)
T ss_dssp             EEEEEEEECSSTTCCCCEEEEECSS--SCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSE
T ss_pred             EEEEEEEEECCCCCcccEEEEeccC--CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            5678999987557899999998754  358999999999999999999999999999999999988877654443 5788


Q ss_pred             eEEEEEecCc
Q psy6405         129 VEITLIKDGA  138 (548)
Q Consensus       129 VtVtV~RdGk  138 (548)
                      +.++|.|++.
T Consensus        81 v~l~v~R~~~   90 (95)
T 2vwr_A           81 VNLTIARPGK   90 (95)
T ss_dssp             EEEEEEEESC
T ss_pred             EEEEEEcCCc
Confidence            9999998765

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.30  E-value=1.6e-11  Score=105.29  Aligned_cols=95  Identities=28%  Similarity=0.460  Sum_probs=74.6

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCC----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK  124 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~----~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk  124 (548)
                      +++++|.|.|.  ..+|||++.++.+..    ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++
T Consensus         2 e~~~~v~l~k~--~~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~   79 (105)
T 2awx_A            2 EKIMEIKLIKG--PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALK   79 (105)
T ss_dssp             -CEEEEEEECB--TTBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHH
T ss_pred             CeEEEEEEEEC--CCCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            45788999988  479999999886532    248999999999999999999999999999999999998888766554


Q ss_pred             -CCCCeEEEEEecCcceeEEEe
Q psy6405         125 -RGPPVEITLIKDGAGLGFSLE  145 (548)
Q Consensus       125 -~g~~VtVtV~RdGkgLGfSIt  145 (548)
                       .+..+.++|.|++....+.++
T Consensus        80 ~~~~~v~l~v~R~~~~~~~~~~  101 (105)
T 2awx_A           80 NTSDFVYLKVAKPTSMYISRHH  101 (105)
T ss_dssp             SCCSEEEEEEECCCC-------
T ss_pred             cCCCeEEEEEEcCCCCCCcccc
Confidence             467789999998776555544

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.28  E-value=2.9e-11  Score=101.58  Aligned_cols=89  Identities=37%  Similarity=0.631  Sum_probs=74.9

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCC--CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYE--SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-  124 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~--~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-  124 (548)
                      .++++++++.+.  ..+|||++.++.+..  ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..+. 
T Consensus         3 ~g~~~~v~l~k~--~~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~   80 (96)
T 1d5g_A            3 PGDIFEVELAKN--DNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN   80 (96)
T ss_dssp             TTCEEEEEEECS--SSSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHS
T ss_pred             CCCEEEEEEEeC--CCCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            467899999987  589999999876532  358999999999999999999999999999999999998887765554 


Q ss_pred             CCCCeEEEEEecCc
Q psy6405         125 RGPPVEITLIKDGA  138 (548)
Q Consensus       125 ~g~~VtVtV~RdGk  138 (548)
                      .+..+.++|.|++.
T Consensus        81 ~g~~v~l~v~R~~~   94 (96)
T 1d5g_A           81 TGQVVHLLLEKGQS   94 (96)
T ss_dssp             CCSEEEEEEECCSC
T ss_pred             CCCeEEEEEEcCCC
Confidence            46778888888653

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.28  E-value=2.5e-11  Score=101.34  Aligned_cols=87  Identities=33%  Similarity=0.582  Sum_probs=72.6

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCC----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK  124 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~----~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk  124 (548)
                      .++++|.|.|.  ..+|||++.++.+..    ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..+.
T Consensus         2 ~~~~~v~l~k~--~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~   79 (94)
T 2fe5_A            2 MTIMEVNLLKG--PKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLK   79 (94)
T ss_dssp             CCEEEEEEECC--TTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHH
T ss_pred             cEEEEEEEEEC--CCCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            36788999987  578999999876532    348999999999999999999999999999999999998888765554


Q ss_pred             -CCCCeEEEEEecC
Q psy6405         125 -RGPPVEITLIKDG  137 (548)
Q Consensus       125 -~g~~VtVtV~RdG  137 (548)
                       .+..+.++|.|++
T Consensus        80 ~~~~~v~l~v~R~g   93 (94)
T 2fe5_A           80 NTSDMVYLKVAKPG   93 (94)
T ss_dssp             TCCSEEEEEEECCC
T ss_pred             cCCCeEEEEEEcCC
Confidence             4557888888765

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.28  E-value=1.1e-11  Score=105.28  Aligned_cols=90  Identities=32%  Similarity=0.536  Sum_probs=77.2

Q ss_pred             CCCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCC
Q psy6405          47 GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRG  126 (548)
Q Consensus        47 ~~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g  126 (548)
                      ...+++++.+.+.....+|||++.++.+. ..+++|..|.++|||+++| |++||+|++|||+++.++++..++..++.+
T Consensus         5 ~~~~~~~v~l~~~~~~~~lG~~~~~~~~~-~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~   82 (101)
T 1uez_A            5 SSGEVRLVSLRRAKAHEGLGFSIRGGSEH-GVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGS   82 (101)
T ss_dssp             CSCCCEEECCCCCCTTTCSSEEEEECTTT-TCCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSS
T ss_pred             CCCccEEEEEEECCCCCcccEEEeCCCCC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHhhcCC
Confidence            35678889998865578999999987643 3579999999999999999 999999999999999999997777777777


Q ss_pred             CCeEEEEEecCc
Q psy6405         127 PPVEITLIKDGA  138 (548)
Q Consensus       127 ~~VtVtV~RdGk  138 (548)
                      ..+.++|.|+++
T Consensus        83 ~~v~l~v~R~g~   94 (101)
T 1uez_A           83 KKLVLSVYSAGR   94 (101)
T ss_dssp             SSCCEEECCCCC
T ss_pred             CeEEEEEEECCc
Confidence            889999988764

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.27  E-value=1.9e-11  Score=103.93  Aligned_cols=90  Identities=29%  Similarity=0.482  Sum_probs=75.2

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCC----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK  124 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~----~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk  124 (548)
                      .+.++|.+.+.  ..+|||++.++.+..    ..+++|..|.++|||+++|+|++||+|++|||.++.++++.+++..++
T Consensus         3 ~~~~~v~l~k~--~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~   80 (102)
T 2i1n_A            3 FKYEEIVLERG--NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALK   80 (102)
T ss_dssp             EEEEEEEEECB--TTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             ceEEEEEEEEC--CCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            45688899887  689999999876532    458999999999999999999999999999999999988877654443


Q ss_pred             -CCCCeEEEEEecCcce
Q psy6405         125 -RGPPVEITLIKDGAGL  140 (548)
Q Consensus       125 -~g~~VtVtV~RdGkgL  140 (548)
                       .+..+.++|.|++...
T Consensus        81 ~~g~~v~l~v~R~~~~~   97 (102)
T 2i1n_A           81 EAGPVVRLVVRRRQPPP   97 (102)
T ss_dssp             HSCSEEEEEEEEECCCC
T ss_pred             cCCCeEEEEEEeCCCCC
Confidence             5678999999977643

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.27  E-value=2.6e-11  Score=101.84  Aligned_cols=87  Identities=28%  Similarity=0.565  Sum_probs=72.7

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCC-----CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh-
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDY-----ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL-  123 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~-----~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l-  123 (548)
                      +.+.+.+.+.  ..+|||++.++.+.     ...+++|..|.++|||+++| |++||+|++|||+++.++++..++... 
T Consensus         3 ~~~~v~~~~~--~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~   79 (97)
T 2w4f_A            3 EELTLTILRQ--TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALR   79 (97)
T ss_dssp             CEEEEEEECB--TTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             eEEEEEEEeC--CCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHh
Confidence            3466778777  78999999987653     24689999999999999999 999999999999999999887765444 


Q ss_pred             hCCCCeEEEEEecCcc
Q psy6405         124 KRGPPVEITLIKDGAG  139 (548)
Q Consensus       124 k~g~~VtVtV~RdGkg  139 (548)
                      .++..+.++|.|+++.
T Consensus        80 ~~g~~v~l~v~R~g~~   95 (97)
T 2w4f_A           80 GAGTAVQMRVWRERET   95 (97)
T ss_dssp             TSCSEEEEEEECCSSC
T ss_pred             CCCCeEEEEEEeCCcc
Confidence            3688899999998764

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.27  E-value=7.1e-12  Score=110.94  Aligned_cols=95  Identities=26%  Similarity=0.438  Sum_probs=72.3

Q ss_pred             CCCCCeEEEEEeeCCCCCceEEEEEeCCCCC--CCCeEEEEEcCCChhhhc-CCCCCCCEEEEECCeeccCccHHHHHHH
Q psy6405          46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYE--SKEITVHKVISGTPADRD-GRLQKGDRILSINGKSMKGLTHKESLAI  122 (548)
Q Consensus        46 ~~~~d~~tV~L~Kd~~~~GLGfsIagG~d~~--~~gVvVs~V~pGSPAaqA-GrLq~GDrILaINGv~V~~~s~~~aV~~  122 (548)
                      +....+++|.|.|. +..+|||++.++.+..  ..+++|..|.++|||+++ | |++||+|++|||+++.++++.+++..
T Consensus        20 s~~~~~~~v~l~k~-~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~agg-L~~GD~Il~VnG~~v~~~~~~~~~~~   97 (120)
T 2iwo_A           20 FQSMGLRTVEMKKG-PTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQK-LRVGDRIVTICGTSTEGMTHTQAVNL   97 (120)
T ss_dssp             -----CEEEEEEC-----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTC-CCTTCEEEEETTEECTTCBHHHHHHH
T ss_pred             CCCCCcEEEEEEcC-CCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCC-CCCCCEEEEECCEECCCCCHHHHHHH
Confidence            34567899999987 3679999999875422  247999999999999999 6 99999999999999999999887765


Q ss_pred             hh-CCCCeEEEEEecCcceeE
Q psy6405         123 LK-RGPPVEITLIKDGAGLGF  142 (548)
Q Consensus       123 lk-~g~~VtVtV~RdGkgLGf  142 (548)
                      ++ .+..++++|.|.+....+
T Consensus        98 l~~~~~~v~l~v~r~g~~~~~  118 (120)
T 2iwo_A           98 LKNASGSIEMQVVAGGDVSET  118 (120)
T ss_dssp             HHHCCSEEEEEEECCTTSSSC
T ss_pred             HHcCCCeEEEEEEECCcccee
Confidence            54 466789999998765543

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.27  E-value=3.3e-11  Score=100.23  Aligned_cols=86  Identities=23%  Similarity=0.428  Sum_probs=72.4

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-C
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-G  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-g  126 (548)
                      +..+++|.+.|.  ..+|||++.++.+  ..+++|..|.++|||+++| |++||+|++|||.++.++++.++...+.. +
T Consensus         2 ~~~~r~v~l~k~--~~g~G~~~~~~~~--~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   76 (90)
T 2he4_A            2 MLRPRLCHLRKG--PQGYGFNLHSDKS--RPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKARE   76 (90)
T ss_dssp             TTCCEEEEEECB--TTBCCEEEEECSS--SSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTSCHHHHHHHHTTSS
T ss_pred             CCCcEEEEEEEC--CCCccEEEEccCC--CCCEEEEEECCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            456899999998  5799999998754  3589999999999999999 99999999999999999987776655543 5


Q ss_pred             CCeEEEEEecCc
Q psy6405         127 PPVEITLIKDGA  138 (548)
Q Consensus       127 ~~VtVtV~RdGk  138 (548)
                      ..+.++|.|.+.
T Consensus        77 ~~v~l~v~r~~~   88 (90)
T 2he4_A           77 DEARLLVVGPST   88 (90)
T ss_dssp             SEEEEEEECCCC
T ss_pred             CcEEEEEEccCC
Confidence            678888888654

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.27  E-value=1e-11  Score=109.41  Aligned_cols=96  Identities=30%  Similarity=0.576  Sum_probs=75.4

Q ss_pred             ccCCCCCCCCeEEEEEeeCCCCCceEEEEEeCCCCC--CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH
Q psy6405          41 PSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYE--SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE  118 (548)
Q Consensus        41 i~gml~~~~d~~tV~L~Kd~~~~GLGfsIagG~d~~--~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~  118 (548)
                      ...++.....+++|.|.|.  ..+|||++.++.+..  ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+
T Consensus        16 ~~~~~~~~~~~~~v~L~k~--~~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~   93 (117)
T 2fne_A           16 ENLYFQSMPQCKSITLERG--PDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEE   93 (117)
T ss_dssp             -------CCEEEEEEECCB--TTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHH
T ss_pred             ccccccCCCccEEEEEEeC--CCcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence            3455566778899999998  489999999875432  247999999999999999999999999999999999888888


Q ss_pred             HHHHhh-CCCCeEEEEEecCc
Q psy6405         119 SLAILK-RGPPVEITLIKDGA  138 (548)
Q Consensus       119 aV~~lk-~g~~VtVtV~RdGk  138 (548)
                      ++..++ .+..+.++|.|.++
T Consensus        94 ~~~~l~~~~~~v~l~v~R~g~  114 (117)
T 2fne_A           94 AVAILKRTKGTVTLMVLSSDE  114 (117)
T ss_dssp             HHHHHHHCCSSEEEEEEECSC
T ss_pred             HHHHHHcCCCeEEEEEEeCCc
Confidence            765554 46678999998765

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.27  E-value=3.2e-11  Score=102.38  Aligned_cols=88  Identities=30%  Similarity=0.544  Sum_probs=74.4

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCC----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK  124 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~----~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk  124 (548)
                      ..++.|.+.|.  ..+|||++.++.+..    ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..+.
T Consensus         6 ~~~~~v~l~~~--~~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~   83 (101)
T 2jik_A            6 VTEEEINLTRG--PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR   83 (101)
T ss_dssp             EEEEEEEEECC--TTCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             CccEEEEEEeC--CCCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            45788999987  489999999987643    368999999999999999999999999999999999998888765554


Q ss_pred             -CCCCeEEEEEecCc
Q psy6405         125 -RGPPVEITLIKDGA  138 (548)
Q Consensus       125 -~g~~VtVtV~RdGk  138 (548)
                       .+..+.++|.|.+.
T Consensus        84 ~~g~~v~l~v~R~~~   98 (101)
T 2jik_A           84 NAGYAVSLRVQHRLE   98 (101)
T ss_dssp             TCCSEEEEEEEEESC
T ss_pred             hCCCeEEEEEEeCCC
Confidence             46678899988654

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.26  E-value=3.7e-11  Score=100.98  Aligned_cols=84  Identities=27%  Similarity=0.544  Sum_probs=73.7

Q ss_pred             CCCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCC
Q psy6405          47 GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRG  126 (548)
Q Consensus        47 ~~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g  126 (548)
                      ....+++|.+.+.  ..+|||.+.+.     .+++|..|.++|||+++| |++||+|++|||+++.++++.+++..++.+
T Consensus         5 ~~~~~r~v~l~~~--~~~~G~~l~~~-----~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~g   76 (93)
T 2dls_A            5 SSGVQRCVIIQKD--QHGFGFTVSGD-----RIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIKSG   76 (93)
T ss_dssp             CCCCEEEEEEECS--SSSCCEEEECS-----SSCEEEEECSSSTTTTTT-CCSSCEEEEETTEECSSSCHHHHHHHHTSS
T ss_pred             CCCCCEEEEEEeC--CCceeEEEeCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcCC
Confidence            4567889999887  58999999853     478999999999999999 999999999999999999888877777788


Q ss_pred             CCeEEEEEecCc
Q psy6405         127 PPVEITLIKDGA  138 (548)
Q Consensus       127 ~~VtVtV~RdGk  138 (548)
                      ..+.|+|.|++.
T Consensus        77 ~~v~l~v~R~~~   88 (93)
T 2dls_A           77 AYVALTLLGSSS   88 (93)
T ss_dssp             SEEEEEEECCCC
T ss_pred             CEEEEEEEECCC
Confidence            999999998654

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.26  E-value=1.7e-11  Score=105.80  Aligned_cols=99  Identities=26%  Similarity=0.467  Sum_probs=81.5

Q ss_pred             CCCCCeEEEEEeeCCCCCceEEEEEeCCCCC--CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh
Q psy6405          46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYE--SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL  123 (548)
Q Consensus        46 ~~~~d~~tV~L~Kd~~~~GLGfsIagG~d~~--~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l  123 (548)
                      ....+.++|.+.+.  ..+|||++.++.+..  ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..+
T Consensus         4 ~~~~~~~~v~l~~~--~~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~   81 (110)
T 1um1_A            4 GSSGYVFTVELERG--PSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLI   81 (110)
T ss_dssp             CSCCCEEEEEEECC--TTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHH
T ss_pred             CCCCcEEEEEEEEC--CCccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            34677899999987  479999999876542  35899999999999999999999999999999999998888876555


Q ss_pred             h-CCCCeEEEEEecCcceeEEEec
Q psy6405         124 K-RGPPVEITLIKDGAGLGFSLEG  146 (548)
Q Consensus       124 k-~g~~VtVtV~RdGkgLGfSItg  146 (548)
                      . .+..+.++|.|.+....++++.
T Consensus        82 ~~~~~~v~l~v~R~~~~~~~~v~~  105 (110)
T 1um1_A           82 RHGGKKMRFLVAKSDVETAKKIHS  105 (110)
T ss_dssp             HTCCSEEEEEEECCCHHHHHHHSS
T ss_pred             HcCCCeEEEEEEeCCcceeEEEEe
Confidence            4 4677899999987766555544

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.26  E-value=4.3e-11  Score=99.51  Aligned_cols=86  Identities=21%  Similarity=0.359  Sum_probs=71.3

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      ..+.++|.+.+.....+|||++.++.+  ..+++|..|.++|||+++| |++||+|++|||+++.++++..++..+. .+
T Consensus         4 ~~~~~~v~l~k~~~~~~~G~~~~~~~~--~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   80 (91)
T 1m5z_A            4 PVELHKVTLYKDSGMEDFGFSVADGLL--EKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESG   80 (91)
T ss_dssp             CCEEEEEEEECCTTCSSSSEEEEECTT--SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTST
T ss_pred             CcceEEEEEEECCCCCCccEEEEeccC--CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            456788999987534689999998754  3689999999999999999 9999999999999999998777654443 46


Q ss_pred             CCeEEEEEec
Q psy6405         127 PPVEITLIKD  136 (548)
Q Consensus       127 ~~VtVtV~Rd  136 (548)
                      ..+.++|.|+
T Consensus        81 ~~v~l~v~R~   90 (91)
T 1m5z_A           81 NKLDLVISRN   90 (91)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEeC
Confidence            7788888875

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.26  E-value=2.6e-11  Score=102.04  Aligned_cols=88  Identities=35%  Similarity=0.666  Sum_probs=72.6

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCC---CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-C
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYE---SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-R  125 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~---~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~  125 (548)
                      +.++|.+.+.  ..+|||++.++.+..   ..+++|..|.++|||+++|+|++||+|++|||.++.+++..++...+. .
T Consensus         3 ~~~~v~l~k~--~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~   80 (97)
T 2jil_A            3 RTVEVTLHKE--GNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQC   80 (97)
T ss_dssp             EEEEEEEECB--TTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHS
T ss_pred             eEEEEEEEeC--CCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3567888876  689999999876432   458999999999999999999999999999999999977777654443 6


Q ss_pred             CCCeEEEEEecCcc
Q psy6405         126 GPPVEITLIKDGAG  139 (548)
Q Consensus       126 g~~VtVtV~RdGkg  139 (548)
                      +..+.++|.|++..
T Consensus        81 g~~v~l~v~R~~~~   94 (97)
T 2jil_A           81 GQEAALLIEYDVSE   94 (97)
T ss_dssp             CSEEEEEEEEECCC
T ss_pred             CCeEEEEEEeCCCc
Confidence            78899999997754

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.25  E-value=6.5e-12  Score=109.36  Aligned_cols=102  Identities=21%  Similarity=0.319  Sum_probs=84.1

Q ss_pred             CCccCCCCCCCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH
Q psy6405          39 GCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE  118 (548)
Q Consensus        39 gai~gml~~~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~  118 (548)
                      .++++|+... +++++++.++ ...+|||.+..+.+  ..+++|..|.++|||+++| |++||+|++|||+++.++++.+
T Consensus         3 ~a~~~~~~~l-dp~~~~l~~~-~~~~~G~~l~~~~~--~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~   77 (114)
T 2edz_A            3 SGSSGMASTF-NPRECKLSKQ-EGQNYGFFLRIEKD--TDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQ   77 (114)
T ss_dssp             CCCCCCCCCC-CCEEEEEECC-TTCCCSCEEECCTT--CCSCEEECCCTTCTTGGGT-CCTTCEEEEESSSBCSSSCHHH
T ss_pred             hhhhhHhhcC-CCEEEEEeCC-CCCcccEEEEEecC--CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHH
Confidence            4678888866 8999999998 47889999886543  3589999999999999999 9999999999999999987777


Q ss_pred             HHHHhh-CCCCeEEEEEecCcceeEEEe
Q psy6405         119 SLAILK-RGPPVEITLIKDGAGLGFSLE  145 (548)
Q Consensus       119 aV~~lk-~g~~VtVtV~RdGkgLGfSIt  145 (548)
                      ++..++ .+..+.++|.|.+....+.+.
T Consensus        78 ~~~~l~~~g~~v~l~v~R~~~~~~~~~~  105 (114)
T 2edz_A           78 VVELVRKSGNSVTLLVLDGDSYEKAVKN  105 (114)
T ss_dssp             HHHHHHHTCSEEEEEEECHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEEEEEECCcceehhhc
Confidence            654443 478899999998776555444

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.25  E-value=4.8e-11  Score=102.57  Aligned_cols=88  Identities=31%  Similarity=0.605  Sum_probs=74.3

Q ss_pred             CCCCeEEEEEeeCCCCCceEEEEEeCCCC-------CCCCeEEEEEcCCChhhhc-CCCCCCCEEEEECCeeccCccHHH
Q psy6405          47 GTSEVSVVVLHRDLPGNSVGITLAGGSDY-------ESKEITVHKVISGTPADRD-GRLQKGDRILSINGKSMKGLTHKE  118 (548)
Q Consensus        47 ~~~d~~tV~L~Kd~~~~GLGfsIagG~d~-------~~~gVvVs~V~pGSPAaqA-GrLq~GDrILaINGv~V~~~s~~~  118 (548)
                      .+.++++|.+.|.  ..+|||++.++.+.       ...+++|..|.++|||+++ | |++||+|++|||+++.++++.+
T Consensus         5 ~~~~~~~v~l~k~--~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~agg-L~~GD~Il~vng~~v~~~~~~~   81 (107)
T 1uhp_A            5 SSGKSLTLVLHRD--SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGG-LQIHDRIIEVNGRDLSRATHDQ   81 (107)
T ss_dssp             CSSEEEEEEECCS--SSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTC-CCSSCEEEEETTEECTTCCHHH
T ss_pred             cCcEEEEEEEEeC--CCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCC-CCCCCEEEEECCEECCCCCHHH
Confidence            3567889999987  68999999987643       2468999999999999999 7 9999999999999999999888


Q ss_pred             HHHHhh-CCCCeEEEEEecC
Q psy6405         119 SLAILK-RGPPVEITLIKDG  137 (548)
Q Consensus       119 aV~~lk-~g~~VtVtV~RdG  137 (548)
                      ++..++ .+..+.++|.|.+
T Consensus        82 ~~~~~~~~~~~v~l~v~R~~  101 (107)
T 1uhp_A           82 AVEAFKTAKEPIVVQVLRRT  101 (107)
T ss_dssp             HHHHHHHCCSSEEEEEEECC
T ss_pred             HHHHHHcCCCcEEEEEEeCC
Confidence            765554 5778999988854

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.25  E-value=4e-11  Score=99.90  Aligned_cols=86  Identities=29%  Similarity=0.543  Sum_probs=72.1

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGP  127 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~  127 (548)
                      .+.++|.+.|. +..+|||++.++.+  ..+++|..|.++|||+++|+|++||+|++|||+++.++++.++...++ .+.
T Consensus         3 ~~~~~v~l~k~-~~~~lG~~~~~~~~--~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   79 (92)
T 2qg1_A            3 SDTLTIGLQKK-PGKGLGLSIVGKRN--DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLG   79 (92)
T ss_dssp             -CEEEEEEECC-TTSCCSEEEECCSS--SCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             ceEEEEEEEeC-CCCcccEEEEeccC--CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            45788999987 37899999997654  358999999999999999999999999999999999988777655444 567


Q ss_pred             CeEEEEEecC
Q psy6405         128 PVEITLIKDG  137 (548)
Q Consensus       128 ~VtVtV~RdG  137 (548)
                      .+.++|.|.+
T Consensus        80 ~v~l~v~R~~   89 (92)
T 2qg1_A           80 TVTLEVGRIS   89 (92)
T ss_dssp             EEEEEEECCC
T ss_pred             eEEEEEEccc
Confidence            7889998865

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.24  E-value=4e-11  Score=104.94  Aligned_cols=94  Identities=41%  Similarity=0.713  Sum_probs=76.8

Q ss_pred             CCCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh--
Q psy6405          47 GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK--  124 (548)
Q Consensus        47 ~~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk--  124 (548)
                      ...+.+.+.+.+. ...+|||++.++.+....+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++  
T Consensus        12 ~~~~~~~v~l~~~-~~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~   90 (119)
T 1x6d_A           12 QLDGIHVTILHKE-EGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQA   90 (119)
T ss_dssp             SCTTEEEEEEECC-TTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHT
T ss_pred             CCCCeEEEEEEeC-CCCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            3566788888887 3789999999887655568999999999999999999999999999999999988888765553  


Q ss_pred             CCCCeEEEEEecCccee
Q psy6405         125 RGPPVEITLIKDGAGLG  141 (548)
Q Consensus       125 ~g~~VtVtV~RdGkgLG  141 (548)
                      .+..+.+++.|++....
T Consensus        91 ~~~~~~l~v~R~~~~~~  107 (119)
T 1x6d_A           91 REPRQAVIVTRKLTPEA  107 (119)
T ss_dssp             TSSSEEEEEEECCCSSS
T ss_pred             CCCeEEEEEEcCCCccc
Confidence            34456678888766543

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.24  E-value=3.9e-11  Score=101.13  Aligned_cols=87  Identities=29%  Similarity=0.479  Sum_probs=71.7

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCCC-----CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYES-----KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK  124 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~~-----~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk  124 (548)
                      .++++.+.|. ...+|||++.++.+...     .+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..+.
T Consensus         5 ~~~~v~l~k~-~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~   83 (98)
T 1ihj_A            5 LIHMVTLDKT-GKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIK   83 (98)
T ss_dssp             EEEEEEEECT-TSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             eEEEEEEEeC-CCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            4678999996 37899999998765432     37999999999999999999999999999999999997776544333


Q ss_pred             -CCCCeEEEEEecC
Q psy6405         125 -RGPPVEITLIKDG  137 (548)
Q Consensus       125 -~g~~VtVtV~RdG  137 (548)
                       ++..+.++|.|++
T Consensus        84 ~~g~~v~l~v~R~g   97 (98)
T 1ihj_A           84 EADFKIELEIQTFD   97 (98)
T ss_dssp             HSCSEEEEEEEEC-
T ss_pred             cCCCeEEEEEEeCC
Confidence             6788999999875

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.24  E-value=3.6e-11  Score=105.85  Aligned_cols=89  Identities=36%  Similarity=0.568  Sum_probs=74.9

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCC----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL  123 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~----~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l  123 (548)
                      ..+++.|.+.+.  ..+|||++.++.+..    ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..+
T Consensus        22 ~~~~~~v~l~k~--~~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l   99 (117)
T 2byg_A           22 SMTVVEIKLFKG--PKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAIL   99 (117)
T ss_dssp             EEEEEEEEEECB--TTBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCceEEEEEEeC--CCCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            346788888887  489999999886532    35799999999999999999999999999999999999888877666


Q ss_pred             h-CCCCeEEEEEecCc
Q psy6405         124 K-RGPPVEITLIKDGA  138 (548)
Q Consensus       124 k-~g~~VtVtV~RdGk  138 (548)
                      + .+..+.|+|.|++.
T Consensus       100 ~~~g~~v~l~v~R~~~  115 (117)
T 2byg_A          100 KNTSEVVYLKVGKPTT  115 (117)
T ss_dssp             HTCCSEEEEEEEEEEE
T ss_pred             HcCCCeEEEEEEeCCc
Confidence            5 46778899988754

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.24  E-value=2.7e-11  Score=101.93  Aligned_cols=90  Identities=24%  Similarity=0.442  Sum_probs=72.8

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCC-CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCC
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDY-ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGP  127 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~-~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~  127 (548)
                      .+++|.+.|.  ..+|||++.+..+. ...+++|..|.++|||+++| |++||+|++|||+++.++++.++...+. .+.
T Consensus         3 ~~r~v~l~k~--~~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~   79 (96)
T 2v90_A            3 KPRCLHLEKG--PQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQGS   79 (96)
T ss_dssp             CCEEEEEECB--TTBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTTT
T ss_pred             CCEEEEEEeC--CCcccEEEEeccCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            5789999998  57999999874322 12479999999999999999 9999999999999999987777655444 377


Q ss_pred             CeEEEEEecCcceeE
Q psy6405         128 PVEITLIKDGAGLGF  142 (548)
Q Consensus       128 ~VtVtV~RdGkgLGf  142 (548)
                      .+.++|.|++....+
T Consensus        80 ~v~l~v~r~~~~~~~   94 (96)
T 2v90_A           80 CVSLTVVDPEADRET   94 (96)
T ss_dssp             EEEEEEECCCTTSCC
T ss_pred             EEEEEEECCCCcccc
Confidence            899999998765433

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.23  E-value=5.6e-11  Score=101.99  Aligned_cols=92  Identities=29%  Similarity=0.520  Sum_probs=74.3

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCC----CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDY----ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL  123 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~----~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l  123 (548)
                      +.+.+.+.+.+.....+|||++.++.+.    ...+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..+
T Consensus        10 ~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l   89 (108)
T 2jre_A           10 GFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVL   89 (108)
T ss_dssp             SCEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHH
T ss_pred             CcEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4567788886433589999999987543    235899999999999999999999999999999999998777765444


Q ss_pred             h-CCCCeEEEEEecCcc
Q psy6405         124 K-RGPPVEITLIKDGAG  139 (548)
Q Consensus       124 k-~g~~VtVtV~RdGkg  139 (548)
                      . .+..+.++|.|.+..
T Consensus        90 ~~~g~~v~l~v~R~~~~  106 (108)
T 2jre_A           90 RNAGNPVRLLLIRRLPL  106 (108)
T ss_dssp             HHHCSEEEEEEEECCCC
T ss_pred             HcCCCeEEEEEEeCCcC
Confidence            3 577899999987654

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.23  E-value=3.8e-11  Score=102.86  Aligned_cols=89  Identities=31%  Similarity=0.558  Sum_probs=74.7

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCC-----CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHH
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDY-----ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAI  122 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~-----~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~  122 (548)
                      ..+.+++.+.+.  ..+|||++.++.+.     ...+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..
T Consensus         5 ~~~~~~v~l~~~--~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   82 (105)
T 1wha_A            5 SSGRHVACLARS--ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSL   82 (105)
T ss_dssp             CCEEEEEEECCC--TTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHH
T ss_pred             CCeeEEEEEEeC--CCccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            456678888887  57899999988752     24689999999999999999999999999999999999888887766


Q ss_pred             hh-CCCCeEEEEEecCc
Q psy6405         123 LK-RGPPVEITLIKDGA  138 (548)
Q Consensus       123 lk-~g~~VtVtV~RdGk  138 (548)
                      ++ .+..+.++|.|.+.
T Consensus        83 l~~~g~~v~l~v~R~~~   99 (105)
T 1wha_A           83 LTAASPTIALLLEREAG   99 (105)
T ss_dssp             HTSCCSCEEEEEEECCC
T ss_pred             HHcCCCeEEEEEEECCC
Confidence            65 36779999998654

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.23  E-value=1.8e-11  Score=106.07  Aligned_cols=90  Identities=23%  Similarity=0.502  Sum_probs=73.8

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCC-CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh--
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDY-ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK--  124 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~-~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk--  124 (548)
                      ..++++|+|.++ +..+|||++.++.+. ...+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++  
T Consensus         3 ~~~~~~v~l~k~-~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   81 (108)
T 3cbz_A            3 HMNIITVTLNME-KYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDI   81 (108)
T ss_dssp             -CCEEEEEECHH-HHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHH
T ss_pred             CceEEEEEEEeC-CCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            347889999986 368999999987543 2468999999999999999999999999999999999988888765553  


Q ss_pred             --CCCCeEEEEEecCc
Q psy6405         125 --RGPPVEITLIKDGA  138 (548)
Q Consensus       125 --~g~~VtVtV~RdGk  138 (548)
                        .+..+.++|.|.+.
T Consensus        82 ~~~~~~v~l~v~R~~~   97 (108)
T 3cbz_A           82 VHKPGPIVLTVAKSGG   97 (108)
T ss_dssp             HTSSSCEEEEEECCCC
T ss_pred             ccCCCeEEEEEEeCCC
Confidence              23468999988654

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.23  E-value=5.5e-11  Score=101.92  Aligned_cols=89  Identities=36%  Similarity=0.602  Sum_probs=74.6

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCC-----CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHH
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDY-----ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAI  122 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~-----~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~  122 (548)
                      ..++++|.+.|. ++.+|||++.++.+.     ...+++|..|.++|||+ +| |++||+|++|||+++.++++..++..
T Consensus         5 ~~~~~~v~l~k~-~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-ag-l~~GD~I~~vng~~v~~~~~~~~~~~   81 (107)
T 2h2b_A            5 IWEQHTVTLHRA-PGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQ-LQENDRVAMVNGVSMDNVEHAFAVQQ   81 (107)
T ss_dssp             CEEEEEEEEECB-TTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TT-BCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             cceeEEEEEEeC-CCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hC-CCCCCEEEEECCEECCCccHHHHHHH
Confidence            356789999998 478999999987653     23589999999999999 99 99999999999999999988876544


Q ss_pred             h-hCCCCeEEEEEecCcc
Q psy6405         123 L-KRGPPVEITLIKDGAG  139 (548)
Q Consensus       123 l-k~g~~VtVtV~RdGkg  139 (548)
                      . ..+..+.++|.|++..
T Consensus        82 ~~~~g~~v~l~v~R~~~~   99 (107)
T 2h2b_A           82 LRKSGKNAKITIRRKKGG   99 (107)
T ss_dssp             HHTCCSEEEEEEEEESCC
T ss_pred             hhCCCCEEEEEEEECCCC
Confidence            4 4678899999987754

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.22  E-value=7.3e-11  Score=101.78  Aligned_cols=89  Identities=27%  Similarity=0.572  Sum_probs=74.5

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCC-----CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHH
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDY-----ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAI  122 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~-----~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~  122 (548)
                      ..+.+.+.+.+.  ..+|||++.++.+.     ...+++|..|.++|||+++| |++||+|++|||+++.++++.+++..
T Consensus        13 ~~~~~~~~l~~~--~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~   89 (110)
T 1x5q_A           13 EEEELTLTILRQ--TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEA   89 (110)
T ss_dssp             CCEEEEEEEECS--SSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CcceEEEEEecC--CCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHH
Confidence            345677888887  78999999987642     24689999999999999999 99999999999999999988876655


Q ss_pred             hh-CCCCeEEEEEecCcc
Q psy6405         123 LK-RGPPVEITLIKDGAG  139 (548)
Q Consensus       123 lk-~g~~VtVtV~RdGkg  139 (548)
                      +. ++..+.|+|.|+++.
T Consensus        90 ~~~~g~~v~l~v~R~g~~  107 (110)
T 1x5q_A           90 LRGAGTAVQMRVWRESGP  107 (110)
T ss_dssp             HHSCCSEEEEEEEECSSC
T ss_pred             hhCCCCeEEEEEEECCcc
Confidence            44 688899999998764

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.22  E-value=6.9e-11  Score=103.14  Aligned_cols=92  Identities=27%  Similarity=0.517  Sum_probs=77.0

Q ss_pred             CCCCCeEEEEEeeCCCCCceEEEEEeCCCCC--------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHH
Q psy6405          46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYE--------SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHK  117 (548)
Q Consensus        46 ~~~~d~~tV~L~Kd~~~~GLGfsIagG~d~~--------~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~  117 (548)
                      ..+.++++|.|.|. +..+|||++.++.+..        ..+++|..|.++|||+++|+|++||+|++|||+++.++++.
T Consensus        11 ~~~~~~~~v~l~k~-~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~   89 (117)
T 2ehr_A           11 SHWGPPRIVEIFRE-PNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHS   89 (117)
T ss_dssp             SCBCCCEEEEECCC-SSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHH
T ss_pred             ccCCCCEEEEEEeC-CCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            34567899999998 4789999999886532        35899999999999999999999999999999999999988


Q ss_pred             HHHHHhh-CCCCeEEEEEecCc
Q psy6405         118 ESLAILK-RGPPVEITLIKDGA  138 (548)
Q Consensus       118 ~aV~~lk-~g~~VtVtV~RdGk  138 (548)
                      +++..++ .+..+.++|.|...
T Consensus        90 ~~~~~~~~~g~~v~l~v~r~~~  111 (117)
T 2ehr_A           90 EAVEAIKNAGNPVVFIVQSLSS  111 (117)
T ss_dssp             HHHHHHHTSCSSEEEEECCBSC
T ss_pred             HHHHHHHcCCCeEEEEEEECCC
Confidence            8765554 46788888887544

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.22  E-value=4.4e-11  Score=104.07  Aligned_cols=88  Identities=30%  Similarity=0.611  Sum_probs=73.9

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      ..++++|.+.+.  ..+|||++.++.+. ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++ .+
T Consensus        22 ~~~~~~v~l~~~--~~glG~~l~~~~~~-~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g   98 (112)
T 2r4h_A           22 SMDFYTVELERG--AKGFGFSLRGGREY-NMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGG   98 (112)
T ss_dssp             -CCEEEEEEECB--TTBTSEEEEECGGG-TCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred             CCceEEEEEEcC--CCccCEEEeccccC-CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            577899999887  47899999987543 358999999999999999999999999999999999998887765554 56


Q ss_pred             CCeEEEEEecCc
Q psy6405         127 PPVEITLIKDGA  138 (548)
Q Consensus       127 ~~VtVtV~RdGk  138 (548)
                      ..+.++|.|++.
T Consensus        99 ~~v~l~v~R~~~  110 (112)
T 2r4h_A           99 RRVRLFLKRGET  110 (112)
T ss_dssp             TEEEEEEECCEE
T ss_pred             CeEEEEEEeCCc
Confidence            778899988654

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.22  E-value=9.5e-11  Score=101.90  Aligned_cols=88  Identities=32%  Similarity=0.643  Sum_probs=73.4

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCC-CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYE-SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-  125 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~-~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-  125 (548)
                      ..+++.+.+.|.   .+|||++.++.+.. ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++. 
T Consensus        13 ~~~~~~v~l~k~---~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~   89 (109)
T 1wi4_A           13 DPAFRVITVTKE---TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRA   89 (109)
T ss_dssp             CTTEEEEEECCS---SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHS
T ss_pred             CCcEEEEEEeCC---CccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcc
Confidence            467888999875   69999999987643 2479999999999999999999999999999999999998887766542 


Q ss_pred             ----CCCeEEEEEecCc
Q psy6405         126 ----GPPVEITLIKDGA  138 (548)
Q Consensus       126 ----g~~VtVtV~RdGk  138 (548)
                          +.++.|++.|.+.
T Consensus        90 ~~r~~~~~~l~v~R~~~  106 (109)
T 1wi4_A           90 KLRSESPWEIAFIRSGP  106 (109)
T ss_dssp             CCSSSSCEEEEEECCCC
T ss_pred             ccCCCceEEEEEEeCCC
Confidence                5668888887654

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.22  E-value=2.8e-11  Score=104.92  Aligned_cols=97  Identities=29%  Similarity=0.462  Sum_probs=78.5

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEe---CCCC--CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAG---GSDY--ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL  123 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIag---G~d~--~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l  123 (548)
                      .+.+.|.+.+.  ..+|||++.+   +.+.  ...+++|..|.++|||+++|+|++||+|++|||.++.++++.+++..+
T Consensus         3 ~~~~~v~l~k~--~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~   80 (113)
T 2g5m_B            3 MELFPVELEKD--SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVL   80 (113)
T ss_dssp             CEEEEEECCCC--SSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHH
T ss_pred             eEEEEEEEEeC--CCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            35677888876  5899999998   4332  235899999999999999999999999999999999998888765444


Q ss_pred             h-CCCCeEEEEEecCcceeEEEecC
Q psy6405         124 K-RGPPVEITLIKDGAGLGFSLEGG  147 (548)
Q Consensus       124 k-~g~~VtVtV~RdGkgLGfSItgg  147 (548)
                      . .+..+.++|.|++....+++++.
T Consensus        81 ~~~g~~v~l~v~R~~~~~~~~v~p~  105 (113)
T 2g5m_B           81 RNTKGRVRFMIGRERPGEQSEVAQL  105 (113)
T ss_dssp             HHSCSSCEEEEEECCCCTTSSCSSC
T ss_pred             hcCCCeEEEEEEeCCCCCcchhhhh
Confidence            3 57889999999887766666543

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.21  E-value=6e-11  Score=104.85  Aligned_cols=91  Identities=30%  Similarity=0.543  Sum_probs=77.5

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh-hCC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL-KRG  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l-k~g  126 (548)
                      ..+++.|.+.|.  ..+|||++.++.+....+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..+ ..+
T Consensus        23 ~~~~~~v~l~k~--~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~  100 (124)
T 2daz_A           23 PGELHIIELEKD--KNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAP  100 (124)
T ss_dssp             SSEEEEEEEECC--SSCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSC
T ss_pred             CCceEEEEEEeC--CCccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            467889999987  68999999988765556899999999999999999999999999999999999888876555 346


Q ss_pred             CCeEEEEEecCcce
Q psy6405         127 PPVEITLIKDGAGL  140 (548)
Q Consensus       127 ~~VtVtV~RdGkgL  140 (548)
                      ..+.++|.|.+..+
T Consensus       101 ~~v~l~v~R~~~~~  114 (124)
T 2daz_A          101 SKVKLVFIRNEDAV  114 (124)
T ss_dssp             SEEEEEEEECTTHH
T ss_pred             CeEEEEEEeCCCcc
Confidence            67899999977643

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.21  E-value=6.8e-11  Score=98.34  Aligned_cols=83  Identities=23%  Similarity=0.411  Sum_probs=66.8

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-CCC
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPP  128 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-g~~  128 (548)
                      ++++|.+.|.  ..+|||++.++.+  ..+++|..|.++|||+++| |++||+|++|||.++.++++.+++..++. +..
T Consensus         3 ~~r~v~l~r~--~~g~G~~~~~~~~--~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   77 (91)
T 1g9o_A            3 LPRLCCLEKG--PNGYGFHLHGEKG--KLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNA   77 (91)
T ss_dssp             CCEEEEEECB--TTBCCEEEEECTT--CSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSE
T ss_pred             ccEEEEEEeC--CCcccEEEEecCC--CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCc
Confidence            5789999998  4799999998764  3589999999999999999 99999999999999999988887766653 233


Q ss_pred             eE-EEEEecC
Q psy6405         129 VE-ITLIKDG  137 (548)
Q Consensus       129 Vt-VtV~RdG  137 (548)
                      +. +++.|++
T Consensus        78 ~~~~~~~r~~   87 (91)
T 1g9o_A           78 VRLLVVDPET   87 (91)
T ss_dssp             EEEEEECCCC
T ss_pred             EEEEEEcCCc
Confidence            33 3344443

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.21  E-value=6.9e-11  Score=101.28  Aligned_cols=87  Identities=28%  Similarity=0.497  Sum_probs=74.5

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPP  128 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~  128 (548)
                      ..+++|.+.|. +..+|||++.++.+. ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++..++.+..
T Consensus        14 ~~~~~v~l~k~-~~~~lG~~~~~~~~~-~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   90 (104)
T 1wi2_A           14 FLPRIVTLKKP-PGAQLGFNIRGGKAS-QLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTARE   90 (104)
T ss_dssp             SCCEEEEECCC-TTCCCSEEEECCSSS-CCCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHHSSS
T ss_pred             CCCEEEEEEeC-CCCCccEEEEcccCC-CCCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhCCCE
Confidence            45789999998 368999999987643 3579999999999999999 99999999999999999888887776766888


Q ss_pred             eEEEEEecCc
Q psy6405         129 VEITLIKDGA  138 (548)
Q Consensus       129 VtVtV~RdGk  138 (548)
                      +.|+|.|...
T Consensus        91 v~l~v~r~~~  100 (104)
T 1wi2_A           91 ISMRVRFFSG  100 (104)
T ss_dssp             EEEEEECCCC
T ss_pred             EEEEEEECCC
Confidence            9999988543

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.21  E-value=7.1e-11  Score=102.03  Aligned_cols=87  Identities=22%  Similarity=0.288  Sum_probs=74.1

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh---C
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK---R  125 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk---~  125 (548)
                      ++.+.|++.|.  ..+|||+|+++   ..+.++|+.|.++|+|++.|+|++||+|++|||+++.+++|.+++..++   .
T Consensus         4 g~~k~V~l~K~--~~~LG~tI~~~---g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~   78 (95)
T 3gge_A            4 GIEKEVNVYKS--EDSLGLTITDN---GVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKK   78 (95)
T ss_dssp             EEEEEEEEECC--SSCCCEEEECS---SSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCT
T ss_pred             CeEEEEEEEEC--CCCceEEEEcC---CCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCC
Confidence            56789999997  48999999953   2357899999999999999999999999999999999999999887665   4


Q ss_pred             CCCeEEEEEecCcce
Q psy6405         126 GPPVEITLIKDGAGL  140 (548)
Q Consensus       126 g~~VtVtV~RdGkgL  140 (548)
                      +.++++.+.++.+.+
T Consensus        79 g~~~~L~lv~p~~~~   93 (95)
T 3gge_A           79 EELFTMKLIEPKKSS   93 (95)
T ss_dssp             TCEEEEEEEEECSCE
T ss_pred             CCEEEEEEECccccc
Confidence            566888888766554

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.21  E-value=5.3e-11  Score=98.97  Aligned_cols=84  Identities=30%  Similarity=0.506  Sum_probs=70.9

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhc-CCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRD-GRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqA-GrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      .++++|.+.|. +..+|||++.++.+. ..+++|..|.++|||+++ | |++||+|++|||+++.++++.+++..++ .+
T Consensus         3 ~~~~~v~l~k~-~~~~lG~~i~~~~~~-~~g~~V~~V~~~spA~~agg-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~~   79 (90)
T 1qav_A            3 LQRRRVTVRKA-DAGGLGISIKGGREN-KMPILISKIFKGLAADQTEA-LFVGDAILSVNGEDLSSATHDEAVQALKKTG   79 (90)
T ss_dssp             SSCEEEEEECC-TTTCCCEEEEEEGGG-TEEEEEEEECTTSHHHHTTC-CCTTEEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             CccEEEEEEeC-CCCCcCEEEEcccCC-CCCEEEEEECCCCHHHhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            46899999997 378999999987543 357999999999999999 7 9999999999999999998888766554 45


Q ss_pred             CCeEEEEEe
Q psy6405         127 PPVEITLIK  135 (548)
Q Consensus       127 ~~VtVtV~R  135 (548)
                      ..+.++|.|
T Consensus        80 ~~v~l~v~r   88 (90)
T 1qav_A           80 KEVVLEVKY   88 (90)
T ss_dssp             SEEEEEEEE
T ss_pred             CeEEEEEEE
Confidence            678888876

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.21  E-value=1.5e-11  Score=107.19  Aligned_cols=93  Identities=28%  Similarity=0.497  Sum_probs=76.7

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCC--CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeecc-CccHHHHHHHhh
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYE--SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK-GLTHKESLAILK  124 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~--~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~-~~s~~~aV~~lk  124 (548)
                      ..+++.|.+.|. +..+|||++.++.+..  ..+++|..|.++|||+++|+|++||+|++|||.++. ++++.+++..++
T Consensus        18 ~~~~~~v~l~k~-~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~   96 (117)
T 2o2t_A           18 GRHVEVFELLKP-PSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQ   96 (117)
T ss_dssp             TSCEEEEEEECC-SSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHH
T ss_pred             CCeEEEEEEEEC-CCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHH
Confidence            357899999987 4789999999775322  357999999999999999999999999999999998 888877665443


Q ss_pred             -CCCCeEEEEEecCccee
Q psy6405         125 -RGPPVEITLIKDGAGLG  141 (548)
Q Consensus       125 -~g~~VtVtV~RdGkgLG  141 (548)
                       .+..+.++|.|++....
T Consensus        97 ~~~~~v~l~v~R~~~~~~  114 (117)
T 2o2t_A           97 KAKDTVQLVIARGSLPQY  114 (117)
T ss_dssp             HCCSEEEEEEESSCCGGG
T ss_pred             cCCCEEEEEEEeCCccee
Confidence             57789999999876544

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.21  E-value=6.1e-11  Score=102.42  Aligned_cols=88  Identities=25%  Similarity=0.399  Sum_probs=73.3

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCC---CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDY---ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK  124 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~---~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk  124 (548)
                      ..++++|.+.|.  ..+|||++.++.+.   ...+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++
T Consensus        13 ~~~~~~v~l~k~--~~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   90 (108)
T 2d92_A           13 SPEVKIVELVKD--CKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILK   90 (108)
T ss_dssp             CSSCEEEEEEEC--SSCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHH
T ss_pred             CCceEEEEEEEC--CCccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            456799999998  47999999986542   2357999999999999999999999999999999999998888776665


Q ss_pred             C--CCCeEEEEEecC
Q psy6405         125 R--GPPVEITLIKDG  137 (548)
Q Consensus       125 ~--g~~VtVtV~RdG  137 (548)
                      .  +..+.++|.|..
T Consensus        91 ~~~~~~v~l~v~R~~  105 (108)
T 2d92_A           91 AVPPGLVHLGICSGP  105 (108)
T ss_dssp             HSCSEEEEEEEECCC
T ss_pred             hCCCCeEEEEEEcCC
Confidence            4  456888888753

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.20  E-value=1.3e-10  Score=97.64  Aligned_cols=91  Identities=26%  Similarity=0.469  Sum_probs=78.9

Q ss_pred             hCCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         124 KRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       124 k~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      +++..++|.+.|.+.++||++.++........+++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++..
T Consensus         2 ~~g~~~~v~l~k~~~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~   81 (96)
T 1d5g_A            2 KPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT   81 (96)
T ss_dssp             CTTCEEEEEEECSSSSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSC
T ss_pred             CCCCEEEEEEEeCCCCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            35778899999999999999998765433345799999999999999999999999999999999999999999999874


Q ss_pred             CCCceeEEEEec
Q psy6405         204 NDGTIQDIKALG  215 (548)
Q Consensus       204 ~g~~V~LlV~Ri  215 (548)
                       +..+.+.+.|.
T Consensus        82 -g~~v~l~v~R~   92 (96)
T 1d5g_A           82 -GQVVHLLLEKG   92 (96)
T ss_dssp             -CSEEEEEEECC
T ss_pred             -CCeEEEEEEcC
Confidence             67888888774

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=6.1e-11  Score=101.13  Aligned_cols=89  Identities=34%  Similarity=0.561  Sum_probs=74.2

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCC-CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-C
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYE-SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-R  125 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~-~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~  125 (548)
                      ..+.+++.+.+.  ..+|||++.++.+.. ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++ .
T Consensus         9 ~~~~~~v~l~~~--~~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   86 (104)
T 2djt_A            9 ASGHFSVELVRG--YAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAG   86 (104)
T ss_dssp             CCCCEEEEEECC--SSSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHT
T ss_pred             CCceEEEEEEeC--CCCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            456788999987  589999999865431 357999999999999999999999999999999999998777665544 5


Q ss_pred             CCCeEEEEEecCc
Q psy6405         126 GPPVEITLIKDGA  138 (548)
Q Consensus       126 g~~VtVtV~RdGk  138 (548)
                      +..+.|+|.|++.
T Consensus        87 g~~v~l~v~R~g~   99 (104)
T 2djt_A           87 GPQLHLVIRRPLS   99 (104)
T ss_dssp             CSEEEEEECCCCC
T ss_pred             CCeEEEEEEECCC
Confidence            7788999988765

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.20  E-value=8.5e-11  Score=104.05  Aligned_cols=89  Identities=30%  Similarity=0.543  Sum_probs=74.1

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCC--CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDY--ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-  124 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~--~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-  124 (548)
                      ..+.+.|.+.+. +..+|||++.++.+.  ...+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++ 
T Consensus        22 ~~~~~~v~l~k~-~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~  100 (118)
T 3b76_A           22 SMHEKVVNIQKD-PGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKR  100 (118)
T ss_dssp             EEEEEEEEEECC-TTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHS
T ss_pred             CCCcEEEEEEeC-CCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            455788888876 478999999988642  2357999999999999999999999999999999999999998876665 


Q ss_pred             CCCCeEEEEEecC
Q psy6405         125 RGPPVEITLIKDG  137 (548)
Q Consensus       125 ~g~~VtVtV~RdG  137 (548)
                      .+..+.++|.|..
T Consensus       101 ~~~~v~L~v~R~~  113 (118)
T 3b76_A          101 TSSSIVLKALEVK  113 (118)
T ss_dssp             CCSEEEEEEEEEE
T ss_pred             CCCeEEEEEEECC
Confidence            3566888888743

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=6.7e-11  Score=103.83  Aligned_cols=93  Identities=28%  Similarity=0.493  Sum_probs=76.9

Q ss_pred             CCCCCCCeEEEEEeeCCCCCceEEEEEeCCCC----CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHH
Q psy6405          44 LIPGTSEVSVVVLHRDLPGNSVGITLAGGSDY----ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES  119 (548)
Q Consensus        44 ml~~~~d~~tV~L~Kd~~~~GLGfsIagG~d~----~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~a  119 (548)
                      .......++.|.|.|.  ..+|||++.++.+.    ...+++|..|.++|||+++|+|++||+|++|||++|.++++.++
T Consensus        11 ~~~~~~~~~~v~l~r~--~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~   88 (120)
T 2eno_A           11 RVDYLVTEEEINLTRG--PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA   88 (120)
T ss_dssp             CCCEEEEEEEEEEECC--SSSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHH
T ss_pred             CCCCCCceEEEEEEEC--CCCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence            3334556788999988  48999999987654    24689999999999999999999999999999999999988776


Q ss_pred             HHHhh-CCCCeEEEEEecCc
Q psy6405         120 LAILK-RGPPVEITLIKDGA  138 (548)
Q Consensus       120 V~~lk-~g~~VtVtV~RdGk  138 (548)
                      +..++ .+..+.++|.|.+.
T Consensus        89 ~~~~~~~g~~v~l~v~R~~~  108 (120)
T 2eno_A           89 VDLFRNAGYAVSLRVQHRLQ  108 (120)
T ss_dssp             HHHHHHHCSEEEEEEEEEEE
T ss_pred             HHHHHcCCCeEEEEEEeCCc
Confidence            65544 46788999998655

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.20  E-value=1.2e-10  Score=98.19  Aligned_cols=89  Identities=31%  Similarity=0.521  Sum_probs=72.7

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      ..+.++|.+.+.  ..+|||++.++.+. ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++ .+
T Consensus         3 ~~~~~~v~l~~~--~~~lG~~i~~~~~~-~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g   79 (97)
T 1n7e_A            3 GAIIYTVELKRY--GGPLGITISGTEEP-FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAG   79 (97)
T ss_dssp             CCCEEEEEEECT--TSCCCEEEECCSST-TSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             CceEEEEEEEeC--CCCcCEEEEcccCC-CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            356788888765  67799999976532 358999999999999999999999999999999999988777665553 56


Q ss_pred             CCeEEEEEecCcc
Q psy6405         127 PPVEITLIKDGAG  139 (548)
Q Consensus       127 ~~VtVtV~RdGkg  139 (548)
                      ..+.++|.|++..
T Consensus        80 ~~v~l~v~R~~~~   92 (97)
T 1n7e_A           80 ETVTLKIKKQTDA   92 (97)
T ss_dssp             SEEEEEEECCCCC
T ss_pred             CeEEEEEEeCCCC
Confidence            7788999887653

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.20  E-value=7.6e-11  Score=97.84  Aligned_cols=84  Identities=24%  Similarity=0.487  Sum_probs=69.3

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh---CC
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK---RG  126 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk---~g  126 (548)
                      ..++|.+.+.  ..+|||++.++.+. ..+++|..|.++|||+++|+|++||+|++|||.++.++++.+++..+.   .+
T Consensus         2 ~~~~v~l~~~--~~g~G~~~~~g~~~-~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   78 (90)
T 2q9v_A            2 MEQDIFLWRK--ETGFGFRILGGNEP-GEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQ   78 (90)
T ss_dssp             EEEEEEEECB--TTBCCEEEEECSST-TSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHH
T ss_pred             CcEEEEEEEC--CCccCEEEEccccC-CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            3578889888  58899999987654 346999999999999999999999999999999998888877654443   24


Q ss_pred             CCeEEEEEec
Q psy6405         127 PPVEITLIKD  136 (548)
Q Consensus       127 ~~VtVtV~Rd  136 (548)
                      ..+.++|.|.
T Consensus        79 ~~v~l~v~R~   88 (90)
T 2q9v_A           79 GHVNLTVRQT   88 (90)
T ss_dssp             TEEEEEEEEC
T ss_pred             CeEEEEEEec
Confidence            4788888875

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.20  E-value=7.1e-11  Score=99.06  Aligned_cols=77  Identities=27%  Similarity=0.530  Sum_probs=65.8

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGP  127 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~  127 (548)
                      .++++|.|.|+ +.++|||++.++        .|..|.++|||+++| |++||+|++|||+++.++++.+++..++ .+.
T Consensus         3 ~~~r~v~l~k~-~~g~~Gf~i~~g--------~I~~v~~gspA~~aG-l~~GD~Il~VNG~~v~~~~~~evv~llr~~g~   72 (82)
T 1r6j_A            3 MDPRTITMHKD-STGHVGFIFKNG--------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGT   72 (82)
T ss_dssp             TCCEEEEEECC-TTSCCCEEEETT--------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCS
T ss_pred             CceEEEEEEEC-CCCCeEEEEECC--------EEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHhcCCC
Confidence            46799999998 367899999843        478999999999999 9999999999999999999999887665 456


Q ss_pred             CeEEEEEe
Q psy6405         128 PVEITLIK  135 (548)
Q Consensus       128 ~VtVtV~R  135 (548)
                      .++++|..
T Consensus        73 ~V~L~v~p   80 (82)
T 1r6j_A           73 VVTITIMP   80 (82)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            67777753

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.19  E-value=8e-11  Score=98.39  Aligned_cols=83  Identities=22%  Similarity=0.346  Sum_probs=67.9

Q ss_pred             eEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhh-cCCCCCCCEEEEECCeeccCccHHHHHHHhhC-CCC
Q psy6405          51 VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADR-DGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPP  128 (548)
Q Consensus        51 ~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaq-AGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-g~~  128 (548)
                      ++.|+|.|. ++.+|||++..+.   .++++|..|.++|||++ +| |++||+|++|||+++.++++.+++..++. ..+
T Consensus         2 ~r~V~l~K~-~~~~lG~~i~~~~---~~~~~I~~V~~gspA~~~ag-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~   76 (88)
T 1kwa_A            2 SRLVQFQKN-TDEPMGITLKMNE---LNHCIVARIMHGGMIHRQGT-LHVGDEIREINGISVANQTVEQLQKMLREMRGS   76 (88)
T ss_dssp             CEEEEEEEC-SSSCCCEEEECSC---GGGEEEEEECTTSHHHHHTC-CCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEE
T ss_pred             eEEEEEEeC-CCCceeEEEEeCC---CCCEEEEEECCCCHHHHcCC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCc
Confidence            578999998 4789999999642   25799999999999999 77 99999999999999998888887655542 226


Q ss_pred             eEEEEEecCc
Q psy6405         129 VEITLIKDGA  138 (548)
Q Consensus       129 VtVtV~RdGk  138 (548)
                      +.++|.|.+.
T Consensus        77 v~l~v~r~~~   86 (88)
T 1kwa_A           77 ITFKIVPSYR   86 (88)
T ss_dssp             EEEEEECCCC
T ss_pred             EEEEEECCcC
Confidence            7788877654

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.19  E-value=1.3e-10  Score=100.12  Aligned_cols=91  Identities=21%  Similarity=0.408  Sum_probs=73.6

Q ss_pred             CCCCeEEEEEeeCCCCCceEEEEEeCCCCC--CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh
Q psy6405          47 GTSEVSVVVLHRDLPGNSVGITLAGGSDYE--SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK  124 (548)
Q Consensus        47 ~~~d~~tV~L~Kd~~~~GLGfsIagG~d~~--~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk  124 (548)
                      ...+.+.+.+.+.  ..+|||++.++.+..  ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++
T Consensus         8 ~~~~~~~~~l~~~--~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~   85 (111)
T 2koj_A            8 KVGKRLNIQLKKG--TEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLR   85 (111)
T ss_dssp             SSCEEEEEEEECB--TTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             ccCcEEEEEEEEC--CCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3455677778776  689999999765421  257999999999999999999999999999999999988777665554


Q ss_pred             ---CCCCeEEEEEecCcc
Q psy6405         125 ---RGPPVEITLIKDGAG  139 (548)
Q Consensus       125 ---~g~~VtVtV~RdGkg  139 (548)
                         .+..+.++|.|++..
T Consensus        86 ~~~~g~~v~l~v~R~~~~  103 (111)
T 2koj_A           86 STKMEGTVSLLVFRQEEA  103 (111)
T ss_dssp             HCCCSSEEEEEEEECCCC
T ss_pred             hCCCCCeEEEEEEeCCCC
Confidence               367889999987653

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1.2e-10  Score=99.00  Aligned_cols=89  Identities=27%  Similarity=0.474  Sum_probs=75.6

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGP  127 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~  127 (548)
                      ...++++.+.+.. ...|||++..+.+. ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++..++.+.
T Consensus         8 ~~~~~~v~l~~~~-~~~lG~~~~~~~~~-~~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~~   84 (100)
T 2eeh_A            8 SDIIHSVRVEKSP-AGRLGFSVRGGSEH-GLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTSSS   84 (100)
T ss_dssp             CCEECCEEECCCS-SSSCSEEEECCTTT-TCCEEEEEECTTSHHHHHT-CCSSCEEEEETTEECSSCCHHHHHHHHHSCS
T ss_pred             CCeEEEEEEEECC-CCCccEEEEccccC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcCCC
Confidence            3457788898873 56799999976543 3589999999999999999 9999999999999999998777777777889


Q ss_pred             CeEEEEEecCcc
Q psy6405         128 PVEITLIKDGAG  139 (548)
Q Consensus       128 ~VtVtV~RdGkg  139 (548)
                      .+.|+|.|++..
T Consensus        85 ~v~l~v~R~g~~   96 (100)
T 2eeh_A           85 RLHMMVRRMGSG   96 (100)
T ss_dssp             SEEEEEEECSCC
T ss_pred             EEEEEEEECCcC
Confidence            999999997753

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.18  E-value=2.5e-11  Score=101.30  Aligned_cols=85  Identities=21%  Similarity=0.295  Sum_probs=68.2

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-CC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GP  127 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-g~  127 (548)
                      ..+++|.+.|.  ..+|||++.+..+  ..+++|..|.++|||+++| |++||+|++|||+++.+++..++...+.. +.
T Consensus         2 ~~pr~v~l~k~--~~~~G~~l~~~~~--~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~   76 (91)
T 2vsp_A            2 MKPKLCRLAKG--ENGYGFHLNAIRG--LPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGK   76 (91)
T ss_dssp             CCEEEEEEECB--TTBTSCCCBCCTT--CSCCBC-CCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHTTSCS
T ss_pred             CCcEEEEEEeC--CCcccEEEEeccC--CCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            36899999998  4589999986543  3578999999999999999 99999999999999997777776655543 77


Q ss_pred             CeEEEEEecCc
Q psy6405         128 PVEITLIKDGA  138 (548)
Q Consensus       128 ~VtVtV~RdGk  138 (548)
                      .+.++|.|.+.
T Consensus        77 ~v~l~v~r~~~   87 (91)
T 2vsp_A           77 NVTLLVCGKKA   87 (91)
T ss_dssp             EEEEEEEC---
T ss_pred             EEEEEEEeCCc
Confidence            89999988764

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.18  E-value=7.6e-11  Score=97.25  Aligned_cols=84  Identities=31%  Similarity=0.609  Sum_probs=68.8

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhh-cCCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADR-DGRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaq-AGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      ++++++.+.|+. ..+|||++.++.+. ..+++|..|.++|||++ +| |++||+|++|||+++.++++.+++..++ .+
T Consensus         1 g~~~~v~l~~~~-~~~lG~~i~~~~~~-~~~~~V~~V~~gspA~~~ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   77 (87)
T 4e34_A            1 GPIRKVLLLKED-HEGLGISITGGKEH-GVPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQR   77 (87)
T ss_dssp             CCCEEEEEECCT-TBCCCEEEEEEGGG-TEEEEEEEECTTSHHHHHSC-CCTTEEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             CCEEEEEEEECC-CCcccEEEEccCCC-CCCEEEEEECCCCHHHhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            367899999983 78999999987543 24699999999999999 68 9999999999999999998888765554 45


Q ss_pred             CCeEEEEEe
Q psy6405         127 PPVEITLIK  135 (548)
Q Consensus       127 ~~VtVtV~R  135 (548)
                      ..+.++|.+
T Consensus        78 ~~v~l~v~~   86 (87)
T 4e34_A           78 GEIEFEVVY   86 (87)
T ss_dssp             SEEEEEEEE
T ss_pred             CeEEEEEEE
Confidence            567776653

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.18  E-value=1e-10  Score=96.69  Aligned_cols=82  Identities=28%  Similarity=0.454  Sum_probs=67.4

Q ss_pred             eEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCCe
Q psy6405          51 VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPPV  129 (548)
Q Consensus        51 ~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~V  129 (548)
                      .++|.+ +.  ..+|||++.++.+. ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++..+. .+..+
T Consensus         4 ~~~v~l-~~--~~~~G~~l~~g~~~-~~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v   78 (88)
T 2uzc_A            4 NYSVSL-VG--PAPWGFRLQGGKDF-NMPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSL   78 (88)
T ss_dssp             EEEEEE-ES--SSCCCEEEEEEGGG-TEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred             EEEEEE-cC--CCcccEEEECcCCC-CCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            566777 33  47899999987653 3579999999999999999 9999999999999999998777665544 46778


Q ss_pred             EEEEEecC
Q psy6405         130 EITLIKDG  137 (548)
Q Consensus       130 tVtV~RdG  137 (548)
                      .++|.|++
T Consensus        79 ~l~v~R~g   86 (88)
T 2uzc_A           79 NMTLQRES   86 (88)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEeCC
Confidence            89998865

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.18  E-value=9e-11  Score=97.36  Aligned_cols=82  Identities=28%  Similarity=0.478  Sum_probs=66.7

Q ss_pred             EEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCCeE
Q psy6405          52 SVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPPVE  130 (548)
Q Consensus        52 ~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~Vt  130 (548)
                      .++.+.+   ..+|||++.++.+. ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++..+. .+..+.
T Consensus         5 ~~v~~~~---~~~~G~~l~gg~~~-~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~   79 (89)
T 2q3g_A            5 FKVVLEG---PAPWGFRLQGGKDF-NVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLS   79 (89)
T ss_dssp             EEEEEES---SSCCCEEEEEEGGG-TEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEE
T ss_pred             EEEEEcC---CCcccEEEECcCCC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEE
Confidence            4455543   47899999987653 3578999999999999999 9999999999999999988887665554 467788


Q ss_pred             EEEEecCc
Q psy6405         131 ITLIKDGA  138 (548)
Q Consensus       131 VtV~RdGk  138 (548)
                      ++|.|++.
T Consensus        80 l~v~R~~~   87 (89)
T 2q3g_A           80 LGLSRAIT   87 (89)
T ss_dssp             EEEEEECC
T ss_pred             EEEEeCCC
Confidence            99988764

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.17  E-value=1.4e-10  Score=97.07  Aligned_cols=85  Identities=22%  Similarity=0.451  Sum_probs=69.3

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      +..++.+.+.|.  ..+|||++.++.  ...+++|..|.++|||+++|+|++||+|++|||.++.++++.+++..++ .+
T Consensus         2 ~~~~r~v~l~k~--~~~lG~~i~~~~--~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   77 (93)
T 3o46_A            2 SDSVKIIRLVKN--REPLGATIKKDE--QTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQ   77 (93)
T ss_dssp             --CCEEEEEEES--SSCCCEEEEECT--TTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCC
T ss_pred             CccEEEEEEEeC--CCCccEEEEecC--CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            356789999998  579999999762  2468999999999999999999999999999999999888888776654 34


Q ss_pred             CCeEEEEEec
Q psy6405         127 PPVEITLIKD  136 (548)
Q Consensus       127 ~~VtVtV~Rd  136 (548)
                      ..+.++|.|.
T Consensus        78 ~~v~l~v~~~   87 (93)
T 3o46_A           78 GAITFKIIPG   87 (93)
T ss_dssp             EEEEEEEECC
T ss_pred             CeEEEEEEeC
Confidence            4677777764

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.17  E-value=5.2e-11  Score=101.85  Aligned_cols=88  Identities=27%  Similarity=0.446  Sum_probs=72.9

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC--
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR--  125 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~--  125 (548)
                      ..+.+.+.+.+.  ..+|||++.++.+. ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++.  
T Consensus         7 ~~~~~~v~l~~~--~~g~G~~i~~g~~~-~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~   83 (103)
T 1uep_A            7 GYKELDVHLRRM--ESGFGFRILGGDEP-GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAA   83 (103)
T ss_dssp             SEEEECCEEESS--SSSCCEEECCCCST-TSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEEEeC--CCccCEEEeeecCC-CCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            345677788886  68999999987643 3579999999999999999999999999999999999888776655542  


Q ss_pred             -CCCeEEEEEecCc
Q psy6405         126 -GPPVEITLIKDGA  138 (548)
Q Consensus       126 -g~~VtVtV~RdGk  138 (548)
                       +..+.++|.|.+.
T Consensus        84 ~g~~v~l~v~R~~~   97 (103)
T 1uep_A           84 RNGQVNLTVRRKVL   97 (103)
T ss_dssp             HHTEEEEEEEEECC
T ss_pred             CCCcEEEEEEeCCC
Confidence             6789999998654

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.17  E-value=8.1e-11  Score=96.49  Aligned_cols=82  Identities=27%  Similarity=0.460  Sum_probs=66.9

Q ss_pred             eEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCCe
Q psy6405          51 VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPPV  129 (548)
Q Consensus        51 ~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~V  129 (548)
                      .++|.+.+   ..+|||++.++.+. ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++..+. .+..+
T Consensus         2 ~~~v~l~~---~~~~G~~l~gg~~~-~~~v~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v   76 (85)
T 1rgw_A            2 AYSVTLTG---PGPWGFRLQGGKDF-NMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNL   76 (85)
T ss_dssp             EEEEEECC---SSCCCEEECCCGGG-TSCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCE
T ss_pred             cEEEEEeC---CCccCEEEEeccCC-CCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeE
Confidence            35667743   37899999987654 3478999999999999999 9999999999999999998887765554 45678


Q ss_pred             EEEEEecC
Q psy6405         130 EITLIKDG  137 (548)
Q Consensus       130 tVtV~RdG  137 (548)
                      .++|.|++
T Consensus        77 ~l~v~R~~   84 (85)
T 1rgw_A           77 SLTLQKSK   84 (85)
T ss_dssp             EEEEESCC
T ss_pred             EEEEEeCC
Confidence            88888865

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.17  E-value=1.2e-10  Score=99.07  Aligned_cols=87  Identities=32%  Similarity=0.588  Sum_probs=73.2

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      ..+++.|.+.|.  ..+|||++.++.+  ..+++|..|.++|||+++|+|++||+|++|||.++.++++.+++..+. .+
T Consensus         9 ~~~~~~v~l~k~--~~glG~~~~~~~~--~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   84 (104)
T 3i4w_A            9 PREPRRIVIHRG--STGLGFNIVGGEX--GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG   84 (104)
T ss_dssp             CSSCEEEEEECB--TTBTSEEEEECC---CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             CCccEEEEEEeC--CCccCEEEECCCC--CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            456789999998  5799999998754  358999999999999999999999999999999999998888665444 56


Q ss_pred             CCeEEEEEecCc
Q psy6405         127 PPVEITLIKDGA  138 (548)
Q Consensus       127 ~~VtVtV~RdGk  138 (548)
                      ..+.++|.|.+.
T Consensus        85 ~~v~l~v~r~~~   96 (104)
T 3i4w_A           85 QTVTIIAQYKPE   96 (104)
T ss_dssp             SEEEEEEEECHH
T ss_pred             CeEEEEEEECcc
Confidence            778898888654

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1.1e-10  Score=97.28  Aligned_cols=86  Identities=31%  Similarity=0.583  Sum_probs=71.0

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGP  127 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~  127 (548)
                      ..+++|++.|.  ..+|||++.++.+. ..+++|..|.++|||+++|.|++||+|++|||+++.++++.+++..+. .+.
T Consensus         4 ~~~r~v~l~k~--~~glG~~l~~~~~~-~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   80 (93)
T 2dkr_A            4 GSSGVVELPKT--DEGLGFNIMGGKEQ-NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQG   80 (93)
T ss_dssp             SCSCEEEEECC--TTCCCEEEECSSSS-SCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCS
T ss_pred             CCCEEEEEEeC--CCCccEEEecccCC-CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            46788999987  69999999987543 358999999999999999449999999999999999988877765554 455


Q ss_pred             CeEEEEEecC
Q psy6405         128 PVEITLIKDG  137 (548)
Q Consensus       128 ~VtVtV~RdG  137 (548)
                      .+.++|.|.+
T Consensus        81 ~v~l~v~r~~   90 (93)
T 2dkr_A           81 SVKLVVRSGP   90 (93)
T ss_dssp             EEEEEECCCC
T ss_pred             cEEEEEEeCC
Confidence            6888888754

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=99.17  E-value=4e-10  Score=123.31  Aligned_cols=141  Identities=16%  Similarity=0.209  Sum_probs=109.5

Q ss_pred             CceEEEEEeCCC---------CCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCcc-----------HHHHHHH
Q psy6405          63 NSVGITLAGGSD---------YESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLT-----------HKESLAI  122 (548)
Q Consensus        63 ~GLGfsIagG~d---------~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s-----------~~~aV~~  122 (548)
                      ..||+.+..-..         ....+++|..|.++|||++ + |++||.|++|||++|....           ....+..
T Consensus       253 ~~LGv~~~~~~~~~~~~~~~l~~~~Gv~V~~V~~~spA~~-a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~  330 (539)
T 4fln_A          253 PCLGVLLQKLENPALRECLKVPTNEGVLVRRVEPTSDASK-V-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQ  330 (539)
T ss_dssp             CBCCEEEEECCCHHHHHHHTCSSSBCEEEEEECTTSGGGG-T-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHT
T ss_pred             eecceEEEecCCHHHHHhcCCCCcCceeeecccCCChHHh-C-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHc
Confidence            457777754211         0135899999999999985 5 9999999999999996543           2335666


Q ss_pred             hhCCCCeEEEEEecCcceeEEEecCCCCC---------------------------------------------------
Q psy6405         123 LKRGPPVEITLIKDGAGLGFSLEGGKDSP---------------------------------------------------  151 (548)
Q Consensus       123 lk~g~~VtVtV~RdGkgLGfSItgg~~s~---------------------------------------------------  151 (548)
                      .++|+.++|+|.|+|+...++|+.+....                                                   
T Consensus       331 ~~~Gd~v~l~v~R~Gk~~~v~Vtl~~~~~~~~~~~~~~~p~~~~~~Gl~f~~Lt~~~~~~~~~~~~~~~l~~~~~~~~~~  410 (539)
T 4fln_A          331 KFAGDIAEIGIIRAGEHKKVQVVLRPRVHLVPYHIDGGQPSYIIVAGLVFTPLSEPLIEEECEDTIGLKLLTKARYSVAR  410 (539)
T ss_dssp             SCTTCEEEEEEEETTEEEEEEEECBCCCCSSCSCTTSSCCCCCCSTTEEEEECCHHHHTTSCSSSSCHHHHHHHHHCCCS
T ss_pred             CCCCCEEEEEEEECCEEEEEEEEEccCccccccccccCCCccccccceEEeeCCHHHHHhhcccccCceeeehhhhhhhc
Confidence            77899999999999998888776432110                                                   


Q ss_pred             -CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCce
Q psy6405         152 -FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI  208 (548)
Q Consensus       152 -lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V  208 (548)
                       -+..+++|+.|.++++|...| ++.||+|++|||++|.+..  ++.++++++++.-+
T Consensus       411 ~~~~~gVvvs~V~~~s~a~~~g-~~~gdiI~~vNg~~V~s~~--~l~~~l~~~k~~~l  465 (539)
T 4fln_A          411 FRGEQIVILSQVLANEVNIGYE-DMNNQQVLKFNGIPIRNIH--HLAHLIDMCKDKYL  465 (539)
T ss_dssp             STTCCCEEEEEECCCGGGTTCS-SCCSEEEEEETTEECCSHH--HHHHHHHTCCSSEE
T ss_pred             cCCceEEEEEEecCCchhhhcC-CCCCCEEEeECCEEcCCHH--HHHHHHHHcCCCeE
Confidence             011368899999999999999 9999999999999999876  88899998855433

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.17  E-value=1.3e-10  Score=101.99  Aligned_cols=90  Identities=29%  Similarity=0.438  Sum_probs=75.4

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      ...++.|.+.+. ...+|||++.++.+....+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++ .+
T Consensus        13 ~~~~~~v~l~k~-~~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g   91 (117)
T 1v62_A           13 ASGPLMVEIVKT-PGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASIS   91 (117)
T ss_dssp             SSSSEEEEEECC-TTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCS
T ss_pred             CCCcEEEEEEcC-CCCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            456889999998 3689999999875533345999999999999999999999999999999999888888766554 56


Q ss_pred             CCeEEEEEecCc
Q psy6405         127 PPVEITLIKDGA  138 (548)
Q Consensus       127 ~~VtVtV~RdGk  138 (548)
                      ..+.++|.|.+.
T Consensus        92 ~~v~l~v~r~~~  103 (117)
T 1v62_A           92 EKVRLEILPVPQ  103 (117)
T ss_dssp             SEEEEEECCBTT
T ss_pred             CeEEEEEEECCC
Confidence            778999988765

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.17  E-value=1e-10  Score=104.53  Aligned_cols=93  Identities=40%  Similarity=0.688  Sum_probs=79.0

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      ....|++.|...++||+|.++.....+..+++|..|.++|||+++|.|++||+|++|||+++.++++.+++++|+...+.
T Consensus        29 ~~~~v~l~k~~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~  108 (130)
T 1i16_A           29 TVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDG  108 (130)
T ss_dssp             EEEEEEEETTSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSS
T ss_pred             cEEEEEEEcCCCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc
Confidence            34678888888999999998776433345799999999999999944999999999999999999999999999998777


Q ss_pred             ceeEEEEeccccC
Q psy6405         207 TIQDIKALGYDLN  219 (548)
Q Consensus       207 ~V~LlV~RilDLr  219 (548)
                      .+.+++.|.....
T Consensus       109 ~v~l~v~r~~~~~  121 (130)
T 1i16_A          109 PVTIVIRRKSLQS  121 (130)
T ss_dssp             EEEEEEEEESSCC
T ss_pred             eEEEEEEeCCCCC
Confidence            7999998874433

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.16  E-value=1.1e-10  Score=97.22  Aligned_cols=85  Identities=24%  Similarity=0.393  Sum_probs=68.7

Q ss_pred             eEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCCe
Q psy6405          51 VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPPV  129 (548)
Q Consensus        51 ~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~V  129 (548)
                      ++.+.+..   ..+|||++.++.+. ..+++|..|.++|||+++| |++||+|++|||+++.++++.++...+. ++..+
T Consensus         4 ~~~v~~~~---~~~~G~~l~~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v   78 (91)
T 2pkt_A            4 TQQIDLQG---PGPWGFRLVGGKDF-EQPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNL   78 (91)
T ss_dssp             EEEEEEES---SSCCSEEEEEEGGG-TEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEE
T ss_pred             cEEEEECC---CCCCCEEEEccCCC-CCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            34555654   37899999987643 2578999999999999999 9999999999999999999776554443 57889


Q ss_pred             EEEEEecCcce
Q psy6405         130 EITLIKDGAGL  140 (548)
Q Consensus       130 tVtV~RdGkgL  140 (548)
                      .++|.|++...
T Consensus        79 ~l~v~R~g~~~   89 (91)
T 2pkt_A           79 TLTVARSEHES   89 (91)
T ss_dssp             EEEEEEECCCC
T ss_pred             EEEEEECCccc
Confidence            99999987654

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.16  E-value=7.3e-11  Score=100.47  Aligned_cols=87  Identities=26%  Similarity=0.526  Sum_probs=72.2

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      ...+++|.+.|.  ..+|||++.++.+  ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++..+. .+
T Consensus         4 ~~~~r~v~l~k~--~~g~G~~l~~~~~--~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g   78 (102)
T 2d90_A            4 GSSGRVVVIKKG--SNGYGFYLRAGPE--QKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGG   78 (102)
T ss_dssp             CSSSEEEEEECC--SSSSSCEEEECSS--SSSEEEECCCTTSTTTTTT-CCTTCEEEEESSCBCTTSCHHHHHHHHHHST
T ss_pred             CCCCEEEEEeeC--CCCccEEEEeecC--CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            467899999997  5799999997543  3589999999999999999 9999999999999999987666654443 47


Q ss_pred             CCeEEEEEecCcc
Q psy6405         127 PPVEITLIKDGAG  139 (548)
Q Consensus       127 ~~VtVtV~RdGkg  139 (548)
                      ..+.++|.|.+..
T Consensus        79 ~~v~l~v~r~~~~   91 (102)
T 2d90_A           79 DQTTLLVLDKEAE   91 (102)
T ss_dssp             TEEEEEECSTTCC
T ss_pred             CEEEEEEEECCCc
Confidence            7889999876543

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.16  E-value=8.9e-11  Score=104.59  Aligned_cols=91  Identities=19%  Similarity=0.281  Sum_probs=74.9

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCC--------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHH
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDY--------ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES  119 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~--------~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~a  119 (548)
                      ...++.|.+.|...+.+|||++.++.+.        ...+++|..|.++|||+++|+|++||+|++|||+++.++++.++
T Consensus        27 ~~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~  106 (128)
T 1nf3_C           27 PETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQV  106 (128)
T ss_dssp             CTTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHH
T ss_pred             CCccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence            4677899999985568999999976431        12479999999999999999889999999999999999888887


Q ss_pred             HHHh-hCCCCeEEEEEecCc
Q psy6405         120 LAIL-KRGPPVEITLIKDGA  138 (548)
Q Consensus       120 V~~l-k~g~~VtVtV~RdGk  138 (548)
                      +..+ ..+..+.++|.|.+.
T Consensus       107 ~~~l~~~~~~v~l~v~r~~~  126 (128)
T 1nf3_C          107 TDMMIANSRNLIITVRPANQ  126 (128)
T ss_dssp             HHHHHHTTTSEEEEEECCCC
T ss_pred             HHHHHcCCCeEEEEEEECCc
Confidence            6555 356779999988654

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.16  E-value=1.4e-10  Score=100.16  Aligned_cols=77  Identities=34%  Similarity=0.627  Sum_probs=66.4

Q ss_pred             CCceEEEEEeCCCCC----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCCeEEEEEec
Q psy6405          62 GNSVGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPPVEITLIKD  136 (548)
Q Consensus        62 ~~GLGfsIagG~d~~----~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~VtVtV~Rd  136 (548)
                      ..+|||++++|.+..    ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++ .+..+.++|.|+
T Consensus        12 ~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   91 (106)
T 4amh_A           12 SKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAKP   91 (106)
T ss_dssp             CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEEEEECC
T ss_pred             CCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeC
Confidence            789999999997653    247999999999999999999999999999999999998888765554 456789999997


Q ss_pred             Cc
Q psy6405         137 GA  138 (548)
Q Consensus       137 Gk  138 (548)
                      +.
T Consensus        92 ~~   93 (106)
T 4amh_A           92 GS   93 (106)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.16  E-value=1.3e-10  Score=99.93  Aligned_cols=90  Identities=37%  Similarity=0.618  Sum_probs=74.7

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEE-----eCCCCC--CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHH
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLA-----GGSDYE--SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL  120 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIa-----gG~d~~--~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV  120 (548)
                      ..+.++|.+.+.  ..+|||++.     ++.+..  ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++
T Consensus         7 ~~~~~~v~l~k~--~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~   84 (108)
T 1q7x_A            7 PGDIFEVELAKN--DNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAV   84 (108)
T ss_dssp             SSSEEEEEEESS--SCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHH
T ss_pred             CCcEEEEEEEEC--CCCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            567899999987  589999999     765532  46899999999999999999999999999999999988777765


Q ss_pred             HHhh-CCCCeEEEEEecCcc
Q psy6405         121 AILK-RGPPVEITLIKDGAG  139 (548)
Q Consensus       121 ~~lk-~g~~VtVtV~RdGkg  139 (548)
                      ..+. .+..+.++|.|++..
T Consensus        85 ~~~~~~g~~v~l~v~R~~~~  104 (108)
T 1q7x_A           85 ETLRNTGQVVHLLLEKGQSP  104 (108)
T ss_dssp             HHHHHTTSEEEEEEECCCCS
T ss_pred             HHHHcCCCeEEEEEEeCCcc
Confidence            4443 567889999987654

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.16  E-value=1.7e-10  Score=98.86  Aligned_cols=89  Identities=30%  Similarity=0.566  Sum_probs=71.9

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCC--CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDY--ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-  124 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~--~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-  124 (548)
                      ..+..++.+ +.  ..+|||++.++.+.  ...+++|..|.++|||+++|+|++||+|++|||.++.++++.+++..++ 
T Consensus         9 ~~~~~~v~l-~~--~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~   85 (106)
T 3axa_A            9 EPEIITVTL-KK--QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR   85 (106)
T ss_dssp             -CCEEEEEE-EC--SSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             CceEEEEEE-CC--CCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            455677777 54  68999999875432  2358999999999999999999999999999999999988888765553 


Q ss_pred             CCCCeEEEEEecCcc
Q psy6405         125 RGPPVEITLIKDGAG  139 (548)
Q Consensus       125 ~g~~VtVtV~RdGkg  139 (548)
                      .+..+.++|.|.+..
T Consensus        86 ~g~~v~l~v~R~~~~  100 (106)
T 3axa_A           86 TSSVVTLEVAKQGAI  100 (106)
T ss_dssp             CCSEEEEEEECCCSS
T ss_pred             CCCeEEEEEEeCCcc
Confidence            577899999987653

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.16  E-value=2.3e-10  Score=101.14  Aligned_cols=87  Identities=26%  Similarity=0.485  Sum_probs=73.4

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC--
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR--  125 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~--  125 (548)
                      ..+.++|.+.+.  ..+|||++.++.+. ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++.  
T Consensus        17 ~~~~~~v~l~~~--~~glG~~~~~g~~~-~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~   93 (123)
T 1ueq_A           17 KGTFLSTTLKKS--NMGFGFTIIGGDEP-DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVP   93 (123)
T ss_dssp             CSEEEEEEEECC--TTSCSEEEECCSSS-SCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSC
T ss_pred             CCcEEEEEEEeC--CCceeEEEecccCC-CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            456788888887  68999999987642 3579999999999999999999999999999999999888887655543  


Q ss_pred             -CCCeEEEEEecC
Q psy6405         126 -GPPVEITLIKDG  137 (548)
Q Consensus       126 -g~~VtVtV~RdG  137 (548)
                       +..+.|+|.|++
T Consensus        94 ~g~~v~l~v~R~~  106 (123)
T 1ueq_A           94 IGQSVNLVLCRGY  106 (123)
T ss_dssp             TTCEEEEEEEESC
T ss_pred             CCCeEEEEEEeCC
Confidence             678999999865

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.16  E-value=1.3e-10  Score=99.95  Aligned_cols=89  Identities=31%  Similarity=0.516  Sum_probs=72.8

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEe---CCCC--CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHH
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAG---GSDY--ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAI  122 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIag---G~d~--~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~  122 (548)
                      ..+.+.|.+.+.  ..+|||++.+   +.+.  ...+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..
T Consensus         7 ~~~~~~v~l~k~--~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   84 (107)
T 1wf8_A            7 GLELFPVELEKD--EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATV   84 (107)
T ss_dssp             CEEEEEEEEECB--TTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHH
T ss_pred             CceEEEEEEEEC--CCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            345678888887  5799999998   4432  23589999999999999999999999999999999999988886654


Q ss_pred             hh-CCCCeEEEEEecCc
Q psy6405         123 LK-RGPPVEITLIKDGA  138 (548)
Q Consensus       123 lk-~g~~VtVtV~RdGk  138 (548)
                      ++ .+..+.++|.|.+.
T Consensus        85 ~~~~~~~v~l~v~R~~~  101 (107)
T 1wf8_A           85 LRNTKGNVRFVIGREKP  101 (107)
T ss_dssp             HHHCCSEEEEEEEEECC
T ss_pred             HhcCCCeEEEEEEeCCC
Confidence            43 57789999988654

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.16  E-value=5e-11  Score=101.80  Aligned_cols=94  Identities=27%  Similarity=0.382  Sum_probs=76.6

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      .++.++|.+..   ..+|||++.++.+. ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++..+. .+
T Consensus         3 ~g~~~~v~l~~---~~~~G~~l~gg~~~-~~~v~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g   77 (103)
T 1wf7_A            3 SGSSGSVSLVG---PAPWGFRLQGGKDF-NMPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACT   77 (103)
T ss_dssp             CCCCEEEEEES---SSCCSCCEEEETTT-TEEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCS
T ss_pred             CCCEEEEEEeC---CCccCEEEeccccC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            46678888873   47899999988754 3468999999999999999 9999999999999999998777654443 46


Q ss_pred             CCeEEEEEecCcceeEEEec
Q psy6405         127 PPVEITLIKDGAGLGFSLEG  146 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItg  146 (548)
                      ..+.++|.|++....+++++
T Consensus        78 ~~v~l~v~R~g~~~~~~v~p   97 (103)
T 1wf7_A           78 GSLNMTLQRASAAAKSEPVS   97 (103)
T ss_dssp             SEEEEEECCCSCCCCCCCCC
T ss_pred             CeEEEEEEeCCCcCCCCCCC
Confidence            77899999988776666654

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.16  E-value=9.6e-11  Score=101.00  Aligned_cols=86  Identities=21%  Similarity=0.413  Sum_probs=70.0

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-----
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-----  124 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-----  124 (548)
                      ..+.|.+.+.  ..+|||++.++.+.....++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++     
T Consensus         6 ~~~~v~l~k~--~~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~   83 (103)
T 1ufx_A            6 SGTLVRVKKS--AATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKT   83 (103)
T ss_dssp             SSEEEEEECC--SSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHC
T ss_pred             ceEEEEEEcC--CCcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhccc
Confidence            4577888765  689999999987654444599999999999999999999999999999999999888765554     


Q ss_pred             -CCCCeEEEEEecC
Q psy6405         125 -RGPPVEITLIKDG  137 (548)
Q Consensus       125 -~g~~VtVtV~RdG  137 (548)
                       .+.++.++|.|.+
T Consensus        84 ~~~~~i~l~v~r~~   97 (103)
T 1ufx_A           84 KDRDYIDFLVTEFN   97 (103)
T ss_dssp             SSCSEEEEEECCCC
T ss_pred             CCCCeEEEEEEEcc
Confidence             3556777777643

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.16  E-value=2e-10  Score=94.29  Aligned_cols=81  Identities=26%  Similarity=0.532  Sum_probs=66.0

Q ss_pred             EEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC---CCC
Q psy6405          52 SVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR---GPP  128 (548)
Q Consensus        52 ~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~---g~~  128 (548)
                      .++.+.|.  ..+|||++.++.+. ..+++|..|.++|||+++|+|++||+|++|||+++.++++.++...+..   +..
T Consensus         2 ~~v~l~k~--~~g~G~~i~~~~~~-~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~   78 (85)
T 2i04_A            2 IHTKLRKS--SRGFGFTVVGGDEP-DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGAS   78 (85)
T ss_dssp             EEEEEECB--TTBSSEEEEECCST-TBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCE
T ss_pred             EEEEEEEC--CCCCCEEEEcccCC-CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCe
Confidence            35777776  57999999986542 3579999999999999999999999999999999999887776555442   567


Q ss_pred             eEEEEEe
Q psy6405         129 VEITLIK  135 (548)
Q Consensus       129 VtVtV~R  135 (548)
                      +.++|.|
T Consensus        79 v~l~v~R   85 (85)
T 2i04_A           79 VDLELCR   85 (85)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            7787765

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.15  E-value=1.8e-10  Score=95.14  Aligned_cols=83  Identities=27%  Similarity=0.446  Sum_probs=66.1

Q ss_pred             EEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-CCCeEE
Q psy6405          53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEI  131 (548)
Q Consensus        53 tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-g~~VtV  131 (548)
                      ++.+.+.. ..+|||++.++.+. ..+++|..|.++|||+++| |++||+|++|||+++.++++.++...+.. ...+.+
T Consensus         3 ~~~v~~~~-~~~lG~~l~~~~~~-~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l   79 (87)
T 2pa1_A            3 ALTVDVAG-PAPWGFRITGGRDF-HTPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRL   79 (87)
T ss_dssp             EEEEEECS-SSCCSEEEEEEGGG-TEEEEEEEECSSSHHHHTT-CCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEE
T ss_pred             EEEEEECC-CCccCEEEecccCC-CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            34455543 57999999987653 3579999999999999999 99999999999999999777766554443 268899


Q ss_pred             EEEecCc
Q psy6405         132 TLIKDGA  138 (548)
Q Consensus       132 tV~RdGk  138 (548)
                      +|.|++.
T Consensus        80 ~v~R~~~   86 (87)
T 2pa1_A           80 QLDRITS   86 (87)
T ss_dssp             EEEECCC
T ss_pred             EEEecCC
Confidence            9998763

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.15  E-value=1e-10  Score=104.59  Aligned_cols=89  Identities=29%  Similarity=0.564  Sum_probs=73.7

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCC--CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDY--ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR  125 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~--~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~  125 (548)
                      ..+++.|.+.|.  ..+|||++.++.+.  ...+++|..|.++|||+++|.|++||+|++|||+++.++++.+++..++.
T Consensus        27 ~~~~~~v~l~k~--~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~  104 (130)
T 1i16_A           27 EATVCTVTLEKM--SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKA  104 (130)
T ss_dssp             SEEEEEEEEETT--SSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHT
T ss_pred             CCcEEEEEEEcC--CCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            456788899887  68999999988753  23579999999999999993399999999999999999999998877764


Q ss_pred             --CCCeEEEEEecCc
Q psy6405         126 --GPPVEITLIKDGA  138 (548)
Q Consensus       126 --g~~VtVtV~RdGk  138 (548)
                        +..+.++|.|.+.
T Consensus       105 ~~~~~v~l~v~r~~~  119 (130)
T 1i16_A          105 LPDGPVTIVIRRKSL  119 (130)
T ss_dssp             SCSSEEEEEEEEESS
T ss_pred             CCCceEEEEEEeCCC
Confidence              3458888888643

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.15  E-value=2.1e-10  Score=103.14  Aligned_cols=88  Identities=19%  Similarity=0.348  Sum_probs=72.5

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCC-----------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccH
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYE-----------SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH  116 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~-----------~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~  116 (548)
                      ....++|.+.|.. ..+|||++.++.+..           ..+++|..|.++|||+++| |++||+|++|||++|.++++
T Consensus        25 ~~~~r~v~l~r~~-~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~  102 (132)
T 3l4f_D           25 IIKEKTVLLQKKD-SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGH  102 (132)
T ss_dssp             CCCCCEEEEECCT-TSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGT-CCTTCEEEEESSSBCTTSCH
T ss_pred             CCCCEEEEEEECC-CCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            4566889999863 689999999886531           1268999999999999999 99999999999999999998


Q ss_pred             HHHHHHhh-CCCCeEEEEEecC
Q psy6405         117 KESLAILK-RGPPVEITLIKDG  137 (548)
Q Consensus       117 ~~aV~~lk-~g~~VtVtV~RdG  137 (548)
                      .+++..++ .+..+.++|.|..
T Consensus       103 ~~~~~~l~~~g~~v~l~v~~~~  124 (132)
T 3l4f_D          103 RQVVNMIRQGGNTLMVKVVMVT  124 (132)
T ss_dssp             HHHHHHHHHTTTEEEEEEECCC
T ss_pred             HHHHHHHHcCCCEEEEEEEECC
Confidence            88766555 5677888887744

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.15  E-value=9.9e-11  Score=103.02  Aligned_cols=84  Identities=30%  Similarity=0.508  Sum_probs=69.9

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhc-CCCCCCCEEEEECCeeccCccHHHHHHHhh---
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRD-GRLQKGDRILSINGKSMKGLTHKESLAILK---  124 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqA-GrLq~GDrILaINGv~V~~~s~~~aV~~lk---  124 (548)
                      .+++.+.+.+.   .+|||++.++.+...+.++|..|.++|||+++ | |++||+|++|||+++.++++.+++..++   
T Consensus        17 ~~~~~~~~~~~---~glG~~i~gg~~~~~~~i~I~~V~~gspA~~agg-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~   92 (118)
T 1v6b_A           17 KDVRLLRIKKE---GSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGG-VVKGDEIMAINGKIVTDYTLAEAEAALQKAW   92 (118)
T ss_dssp             CCEEEEEEESC---SCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCS-SCTTCEEEEESSCBCTTCBHHHHHHHHHHHH
T ss_pred             ceEEEEEECCC---CccCEEEEcccCCCCCCEEEEEECCCCHHHHcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHHhh
Confidence            35677777765   48999999987765567999999999999999 6 9999999999999999999887654443   


Q ss_pred             --CCCCeEEEEEec
Q psy6405         125 --RGPPVEITLIKD  136 (548)
Q Consensus       125 --~g~~VtVtV~Rd  136 (548)
                        .+..++++|.|.
T Consensus        93 ~~~g~~v~l~v~r~  106 (118)
T 1v6b_A           93 NQGGDWIDLVVAVC  106 (118)
T ss_dssp             HHTCSEEEEEEECC
T ss_pred             hcCCCeEEEEEEeC
Confidence              377899999884

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.15  E-value=6.8e-11  Score=102.70  Aligned_cols=89  Identities=28%  Similarity=0.564  Sum_probs=74.3

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGP  127 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~  127 (548)
                      .+.+.+.+.+.  ..+|||++.++.+....+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++ .+.
T Consensus        16 ~~~~~v~l~~~--~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~   93 (116)
T 2dm8_A           16 GQEMIIEISKG--RSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQ   93 (116)
T ss_dssp             TSCEEEEEECC--SSCCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCCS
T ss_pred             CCEEEEEEEEC--CCcccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            45688888877  689999999876544468999999999999999999999999999999999998777765554 456


Q ss_pred             CeEEEEEecCcc
Q psy6405         128 PVEITLIKDGAG  139 (548)
Q Consensus       128 ~VtVtV~RdGkg  139 (548)
                      .+.|+|.|++..
T Consensus        94 ~v~l~v~R~~~~  105 (116)
T 2dm8_A           94 KVRLVVYRDEAH  105 (116)
T ss_dssp             EEEEEEECCSSC
T ss_pred             eEEEEEEeCCcc
Confidence            788989887654

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.15  E-value=2e-10  Score=101.80  Aligned_cols=95  Identities=28%  Similarity=0.489  Sum_probs=77.3

Q ss_pred             CCCCCCeEEEEEeeCCCCCceEEEEEeCCCC----CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHH
Q psy6405          45 IPGTSEVSVVVLHRDLPGNSVGITLAGGSDY----ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL  120 (548)
Q Consensus        45 l~~~~d~~tV~L~Kd~~~~GLGfsIagG~d~----~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV  120 (548)
                      .....+.+.|.+.+. ...+|||++.++.+.    ...+++|..|.++|||+++|+|++||+|++|||+++.++++.+++
T Consensus        10 ~~~~~~~~~v~l~~~-~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~   88 (129)
T 2dmz_A           10 DSSLFETYNVELVRK-DGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVV   88 (129)
T ss_dssp             SSCCEEEEEEEECCC-TTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHH
T ss_pred             CCCCCcEEEEEEEeC-CCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            334566788889775 378999999986543    235899999999999999999999999999999999998877765


Q ss_pred             HHhh-CCCCeEEEEEecCcce
Q psy6405         121 AILK-RGPPVEITLIKDGAGL  140 (548)
Q Consensus       121 ~~lk-~g~~VtVtV~RdGkgL  140 (548)
                      ..+. .+..+.++|.|++...
T Consensus        89 ~~l~~~~~~v~l~v~R~~~~~  109 (129)
T 2dmz_A           89 EVLRNAGQVVHLTLVRRKTSS  109 (129)
T ss_dssp             HHHHHCCSSEEEEEEEESSSS
T ss_pred             HHHHcCCCeEEEEEEeCCccc
Confidence            5444 6888999999987643

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.15  E-value=1e-10  Score=102.29  Aligned_cols=89  Identities=29%  Similarity=0.480  Sum_probs=73.4

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCC-----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHH
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYE-----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAI  122 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~-----~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~  122 (548)
                      ..+.++|.+.|. ++.+|||++.++.+..     ..+++|..|.++|||+ +| |++||+|++|||+++.++++.+++..
T Consensus        12 ~~~~~~v~l~k~-~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~g-L~~GD~I~~Vng~~v~~~~~~~~~~~   88 (117)
T 2csj_A           12 IWEQYTVTLQKD-SKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQ   88 (117)
T ss_dssp             EEEEEEEEEECC-SSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHH
T ss_pred             cceEEEEEEEEC-CCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-cc-CCCCCEEEEECCEECCCcCHHHHHHH
Confidence            456788889887 3689999999886532     3579999999999997 88 99999999999999999988887655


Q ss_pred             hh-CCCCeEEEEEecCcc
Q psy6405         123 LK-RGPPVEITLIKDGAG  139 (548)
Q Consensus       123 lk-~g~~VtVtV~RdGkg  139 (548)
                      ++ .+..+.++|.|.+..
T Consensus        89 l~~~~~~v~l~v~R~~~~  106 (117)
T 2csj_A           89 LRKSGKIAAIVVKRPRKV  106 (117)
T ss_dssp             HHHSCSEEEEEEEEEEEC
T ss_pred             HhcCCCeEEEEEEECCcc
Confidence            44 577899999986553

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.15  E-value=1.6e-10  Score=101.21  Aligned_cols=90  Identities=26%  Similarity=0.423  Sum_probs=73.8

Q ss_pred             CCeEEEEEeeCC-----CCCceEEEEEeCCCCC----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHH
Q psy6405          49 SEVSVVVLHRDL-----PGNSVGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES  119 (548)
Q Consensus        49 ~d~~tV~L~Kd~-----~~~GLGfsIagG~d~~----~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~a  119 (548)
                      ..++.+.+.|..     +..+|||++.++.+..    ..+++|..|.++|||+++|+|++||+|++|||+++.++++.++
T Consensus        11 ~~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~   90 (117)
T 1ujd_A           11 FPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEV   90 (117)
T ss_dssp             SCEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHH
T ss_pred             CceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHH
Confidence            345778888873     2479999999876532    2379999999999999999999999999999999999998887


Q ss_pred             HHHhh-CCCCeEEEEEecCc
Q psy6405         120 LAILK-RGPPVEITLIKDGA  138 (548)
Q Consensus       120 V~~lk-~g~~VtVtV~RdGk  138 (548)
                      +..++ .+..+.|+|.|++.
T Consensus        91 ~~~l~~~~~~v~l~v~R~~~  110 (117)
T 1ujd_A           91 QSIISQQSGEAEICVRLDLN  110 (117)
T ss_dssp             HHHHSCCSSCEEEEEESSCC
T ss_pred             HHHHhcCCCEEEEEEEECCc
Confidence            76554 46778999988765

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.14  E-value=1.7e-10  Score=99.63  Aligned_cols=87  Identities=37%  Similarity=0.661  Sum_probs=72.9

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      ..+++.+.+.+.  ..+|||++.++.+   .+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++ .+
T Consensus        13 ~~~~~~v~l~~~--~~~lG~~l~~~~~---~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g   87 (111)
T 2dlu_A           13 WGHVEEVELIND--GSGLGFGIVGGKT---SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCG   87 (111)
T ss_dssp             CSEEEEEEEECC--SSCCCEEEECCSS---SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHC
T ss_pred             cCceEEEEEEeC--CCccCEEEeccCC---CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            456788999887  5789999997653   57999999999999999999999999999999999988877665444 46


Q ss_pred             CCeEEEEEecCcc
Q psy6405         127 PPVEITLIKDGAG  139 (548)
Q Consensus       127 ~~VtVtV~RdGkg  139 (548)
                      ..+.++|.|++..
T Consensus        88 ~~v~l~v~R~~~~  100 (111)
T 2dlu_A           88 NSVRMLVARDPAG  100 (111)
T ss_dssp             SEEEEEEEESCTT
T ss_pred             CeEEEEEEeCCCC
Confidence            7789999887654

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.14  E-value=1.5e-10  Score=96.79  Aligned_cols=85  Identities=25%  Similarity=0.541  Sum_probs=68.4

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-CC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GP  127 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-g~  127 (548)
                      ..++.+.+.+.  ..+|||++.++.+.  .+++|..|.++|||+++| |++||+|++|||.++.++++.+++..++. +.
T Consensus         4 ~~~r~v~l~~~--~~~~G~~l~~~~~~--~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   78 (95)
T 3r68_A            4 HQPRVVVIKKG--SNGYGFYLRAGPEQ--KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGD   78 (95)
T ss_dssp             CCCEEEEEECB--TTBCSCEEEEC--C--CSEEEECCCTTSHHHHHT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTTT
T ss_pred             CCcEEEEEecC--CCcccEEEEecCCC--CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            56788999987  68999999876542  489999999999999999 99999999999999999988877655553 55


Q ss_pred             CeEEEEEecCc
Q psy6405         128 PVEITLIKDGA  138 (548)
Q Consensus       128 ~VtVtV~RdGk  138 (548)
                      .+.+.+.|.+.
T Consensus        79 ~~~~~~~r~~~   89 (95)
T 3r68_A           79 QTTLLVLDKEL   89 (95)
T ss_dssp             EEEEEEEECC-
T ss_pred             eEEEEEECCcc
Confidence            66666666543

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.14  E-value=1.9e-10  Score=96.15  Aligned_cols=81  Identities=21%  Similarity=0.328  Sum_probs=67.4

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-CCC
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPP  128 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-g~~  128 (548)
                      .+++|.+.+.  ..+|||.+.+.     .+++|..|.++|||+++| |++||+|++|||.++.++++.+++..+.. +..
T Consensus         3 ~~r~v~l~~~--~~g~G~~l~~~-----~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~   74 (91)
T 2f5y_A            3 RYRQITIPRG--KDGFGFTICCD-----SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSE   74 (91)
T ss_dssp             EEEEEEEECB--TTBTSEEEECS-----SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSE
T ss_pred             ceEEEEEEeC--CCCccEEEecC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4688999887  57899999853     368999999999999999 99999999999999999988876655543 567


Q ss_pred             eEEEEEecCc
Q psy6405         129 VEITLIKDGA  138 (548)
Q Consensus       129 VtVtV~RdGk  138 (548)
                      +.++|.|.+.
T Consensus        75 v~l~v~R~~~   84 (91)
T 2f5y_A           75 IILLVWRMVP   84 (91)
T ss_dssp             EEEEEEECC-
T ss_pred             EEEEEEeCCC
Confidence            8888888654

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.14  E-value=2.8e-10  Score=96.00  Aligned_cols=85  Identities=25%  Similarity=0.437  Sum_probs=66.9

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEe-------CCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHH
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAG-------GSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL  120 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIag-------G~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV  120 (548)
                      ...+++|.+.|.. ..+|||++.+       +.+. ..+++|..|.++|||+++| |++||+|++|||+++.++++.++.
T Consensus         2 ~~~~r~v~l~k~~-~~~~Gf~l~~~g~~~~~~~~~-~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~   78 (96)
T 2ego_A            2 SQQRKVLTLEKGD-NQTFGFEIQTYGLHHREEQRV-EMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIV   78 (96)
T ss_dssp             CCCEEEEEEECCT-TCCCSEEEEEEEC-------C-CEEEEEEEECTTCHHHHTT-CCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CCccEEEEEEeCC-CCCccEEEEeccccccCCCCC-CCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHH
Confidence            3567899999983 6799999986       2211 3478999999999999999 999999999999999998777765


Q ss_pred             HHhh-CCCCeEEEEEe
Q psy6405         121 AILK-RGPPVEITLIK  135 (548)
Q Consensus       121 ~~lk-~g~~VtVtV~R  135 (548)
                      ..+. .+..+.++|.+
T Consensus        79 ~~l~~~~~~v~l~v~~   94 (96)
T 2ego_A           79 DIIKASGNVLRLETLY   94 (96)
T ss_dssp             HHHHHTTTEEEEEEEC
T ss_pred             HHHHhCCCeEEEEEEE
Confidence            4443 24467777765

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.14  E-value=1.5e-10  Score=99.10  Aligned_cols=86  Identities=26%  Similarity=0.462  Sum_probs=70.9

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcC-CCCCCCEEEEECCeeccCccHHHHHHHhhCC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDG-RLQKGDRILSINGKSMKGLTHKESLAILKRG  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAG-rLq~GDrILaINGv~V~~~s~~~aV~~lk~g  126 (548)
                      ...++.+.+.+. ...+|||.+.++.+. ..+++|..|.++|||+++| +|++||+|++|||+++.++++.+++..++..
T Consensus        15 ~~~~~~v~l~~~-~~~~~G~~~~gg~~~-~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~   92 (107)
T 3nfk_A           15 HDNLVLIRMKPD-ENGRFGFNVKGGYDQ-KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS   92 (107)
T ss_dssp             -CCCEEEEECCC-TTSCCCEEEEEEGGG-TEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCG
T ss_pred             CCCEEEEEEEcC-CCCCCCEEEEccCCC-CCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            356788999887 368999999987653 2478999999999999999 6999999999999999999988877655532


Q ss_pred             -----CCeEEEEEe
Q psy6405         127 -----PPVEITLIK  135 (548)
Q Consensus       127 -----~~VtVtV~R  135 (548)
                           ..+.++|.|
T Consensus        93 ~~~~~~~v~l~v~r  106 (107)
T 3nfk_A           93 CERHSGELMLLVRP  106 (107)
T ss_dssp             GGSBTTBEEEEEEC
T ss_pred             cccCCcEEEEEEEc
Confidence                 378888876

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.14  E-value=1.1e-10  Score=103.54  Aligned_cols=90  Identities=22%  Similarity=0.454  Sum_probs=75.2

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCC--CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeecc-CccHHHHHHHhh
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYE--SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK-GLTHKESLAILK  124 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~--~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~-~~s~~~aV~~lk  124 (548)
                      ..+++.|.+.+. ...+|||++.++.+..  ..+++|..|.++|||+++|+|++||+|++|||+++. ++++.+++..++
T Consensus        23 ~~~~~~v~l~k~-~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~  101 (128)
T 2db5_A           23 GRQIEYIDIERP-STGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQ  101 (128)
T ss_dssp             TCEEEEEEEECC-SSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHH
T ss_pred             cCceEEEEEEEC-CCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHH
Confidence            456889999987 3689999999876532  237999999999999999999999999999999997 888888776554


Q ss_pred             -CCCCeEEEEEecCc
Q psy6405         125 -RGPPVEITLIKDGA  138 (548)
Q Consensus       125 -~g~~VtVtV~RdGk  138 (548)
                       .+..+.|+|.|.+.
T Consensus       102 ~~~~~v~l~v~r~~~  116 (128)
T 2db5_A          102 QTTGSLRLIVAREPV  116 (128)
T ss_dssp             HCCSEEEEEEEECCC
T ss_pred             cCCCeEEEEEEcCCC
Confidence             56778999988754

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.13  E-value=1.2e-10  Score=99.65  Aligned_cols=85  Identities=25%  Similarity=0.427  Sum_probs=70.8

Q ss_pred             eEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh-hCCCCe
Q psy6405          51 VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL-KRGPPV  129 (548)
Q Consensus        51 ~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l-k~g~~V  129 (548)
                      ++.+.+.+. +..++||.+..+.+  ..+++|..|.++|||+++| |++||+|++|||.++.++++.+++..+ ..+..+
T Consensus         2 ~r~v~l~~~-~~~~~G~~l~~~~~--~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v   77 (106)
T 3ngh_A            2 PRESKLSKQ-EGQNYGFFLRIEKD--TDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSV   77 (106)
T ss_dssp             CEEEEEECC-TTCCCCCEEECCTT--CCSCEEECCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEE
T ss_pred             CEEEEEEeC-CCCeeCEEEEEEeC--CCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEE
Confidence            577888887 47889999987643  3578999999999999999 999999999999999999877765444 467789


Q ss_pred             EEEEEecCcc
Q psy6405         130 EITLIKDGAG  139 (548)
Q Consensus       130 tVtV~RdGkg  139 (548)
                      .++|.|.+..
T Consensus        78 ~l~v~r~~~~   87 (106)
T 3ngh_A           78 TLLVLDGDSY   87 (106)
T ss_dssp             EEEEECHHHH
T ss_pred             EEEEEECCee
Confidence            9999987653

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=1.8e-10  Score=96.79  Aligned_cols=85  Identities=28%  Similarity=0.395  Sum_probs=69.5

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGP  127 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~  127 (548)
                      -.++.|.+.+.   .+|||++.++.+. ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++..+. .+.
T Consensus         7 ~~~~~v~l~~~---~~~G~~l~gg~~~-~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~   81 (94)
T 2eeg_A            7 GMPHSVTLRGP---SPWGFRLVGGRDF-SAPLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGCHD   81 (94)
T ss_dssp             CCCEEEEECCS---SCCSCCEECCTTT-TSCCEECCCCSSSHHHHTT-CCTTCEEEEETTEETTTCCHHHHHHHHHTCCS
T ss_pred             CceEEEEEeCC---CccCEEEECccCC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            45677888543   6899999988754 3578999999999999999 9999999999999999997777654443 567


Q ss_pred             CeEEEEEecCc
Q psy6405         128 PVEITLIKDGA  138 (548)
Q Consensus       128 ~VtVtV~RdGk  138 (548)
                      .+.++|.|++.
T Consensus        82 ~v~l~v~R~g~   92 (94)
T 2eeg_A           82 HLTLSVSSGPS   92 (94)
T ss_dssp             CEEEEEECCSS
T ss_pred             eEEEEEEeCCC
Confidence            88999988664

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.13  E-value=1.8e-10  Score=99.88  Aligned_cols=94  Identities=23%  Similarity=0.387  Sum_probs=76.0

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGP  127 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~  127 (548)
                      ....+++.+.+.. ..+|||++.++.+. ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++..+..+.
T Consensus        13 ~~~~~~v~~~~~~-~~~lG~~l~~~~~~-~~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~   89 (114)
T 1x5n_A           13 ENKEKKVFISLVG-SRGLGCSISSGPIQ-KPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSR   89 (114)
T ss_dssp             CCSSEEEEECCCS-SCCCCEEEEECCSS-SCSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHCS
T ss_pred             CCCcEEEEEEEcC-CCceeEEEeecCCC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            4456788887763 78999999987543 3589999999999999999 9999999999999999998766666666567


Q ss_pred             CeEEEEEec-CcceeEEE
Q psy6405         128 PVEITLIKD-GAGLGFSL  144 (548)
Q Consensus       128 ~VtVtV~Rd-GkgLGfSI  144 (548)
                      .+.++|.|+ +..+.+.+
T Consensus        90 ~v~l~v~r~~g~~~~~~~  107 (114)
T 1x5n_A           90 SLTISIVAAAGRELFMTD  107 (114)
T ss_dssp             SEEEEECSSTTTHHHHSS
T ss_pred             eEEEEEEcCCCCceEEEe
Confidence            899999887 66544433

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.13  E-value=3.4e-10  Score=97.56  Aligned_cols=85  Identities=20%  Similarity=0.374  Sum_probs=69.4

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCC-----------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYE-----------SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE  118 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~-----------~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~  118 (548)
                      +.+.+.+.+.. ..+|||++.++.+..           ..+++|..|.++|||+++| |++||+|++|||+++.++++.+
T Consensus         7 ~~~~v~l~~~~-~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~   84 (109)
T 1q3o_A            7 KEKTVLLQKKD-SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQ   84 (109)
T ss_dssp             EEEEEEEECCT-TSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHH
T ss_pred             CcEEEEEEECC-CCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHH
Confidence            45788888763 789999999876532           1268999999999999999 9999999999999999998877


Q ss_pred             HHHHhh-CCCCeEEEEEec
Q psy6405         119 SLAILK-RGPPVEITLIKD  136 (548)
Q Consensus       119 aV~~lk-~g~~VtVtV~Rd  136 (548)
                      ++..++ .+..+.++|.|.
T Consensus        85 ~~~~l~~~~~~v~l~v~~~  103 (109)
T 1q3o_A           85 VVNMIRQGGNTLMVKVVMV  103 (109)
T ss_dssp             HHHHHHHTTTEEEEEEEEE
T ss_pred             HHHHHHhCCCEEEEEEEEC
Confidence            665554 466788888774

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.13  E-value=3.8e-10  Score=95.82  Aligned_cols=89  Identities=27%  Similarity=0.570  Sum_probs=69.4

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCC--------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHH
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYE--------SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL  120 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~--------~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV  120 (548)
                      .+++++++.+. +..+|||++.++.+..        ..+++|..|.++|||+++|+|++||+|++|||.++.++++.++.
T Consensus         3 ldp~~v~l~~~-~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~   81 (103)
T 2fcf_A            3 MQPRRVELWRE-PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAV   81 (103)
T ss_dssp             CSCEEEEECCC-C-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CCCEEEEEEeC-CCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            46799999987 3689999998764421        14799999999999999999999999999999999997777765


Q ss_pred             HHhh-CCCCeEEEEEecCc
Q psy6405         121 AILK-RGPPVEITLIKDGA  138 (548)
Q Consensus       121 ~~lk-~g~~VtVtV~RdGk  138 (548)
                      ..+. .+..+.++|.|.+.
T Consensus        82 ~~l~~~~~~v~l~v~r~~~  100 (103)
T 2fcf_A           82 EAIRKAGNPVVFMVQSIIS  100 (103)
T ss_dssp             HHHHTCCSSEEEEEECCCC
T ss_pred             HHHHhCCCcEEEEEEECCC
Confidence            5444 24478888888654

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.12  E-value=4.2e-10  Score=99.39  Aligned_cols=87  Identities=32%  Similarity=0.508  Sum_probs=72.8

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGP  127 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~  127 (548)
                      ..++++.+.|. +..+|||++.++.+. ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++ .+.
T Consensus        18 ~~~~~v~l~k~-~~~~lG~~i~gg~~~-~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~   95 (125)
T 3hpk_A           18 TVPGKVTLQKD-AQNLIGISIGGGAQY-CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKG   95 (125)
T ss_dssp             EEEEEEEEECC-TTSCCCEEEEECSSC-CSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCS
T ss_pred             CCCeEEEEEeC-CCCCcCEEEeccCCC-CCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            35688889887 478999999988753 357999999999999999999999999999999999988888765554 455


Q ss_pred             CeEEEEEecC
Q psy6405         128 PVEITLIKDG  137 (548)
Q Consensus       128 ~VtVtV~RdG  137 (548)
                      .+.++|.|..
T Consensus        96 ~v~l~v~r~~  105 (125)
T 3hpk_A           96 EVTIHYNKLQ  105 (125)
T ss_dssp             EEEEEEEEEC
T ss_pred             eEEEEEEECC
Confidence            6888888743

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.12  E-value=2.5e-10  Score=96.57  Aligned_cols=87  Identities=26%  Similarity=0.427  Sum_probs=70.3

Q ss_pred             CCCCCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh
Q psy6405          45 IPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK  124 (548)
Q Consensus        45 l~~~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk  124 (548)
                      .....+.+++.+.+. .+.+|||++...    ..+++|..|.++|||+++|+|++||+|++|||+++.++++..++..++
T Consensus         3 ~~~~~~~~~v~l~~~-~~~glG~~~~~~----~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~   77 (96)
T 2qkv_A            3 PRNSLEKFNVDLMKK-AGKELGLSLSPN----EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFK   77 (96)
T ss_dssp             CCCCCCCEEEEEECB-TTBCCCEEEEEC----SSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             ChHHCceEEEEEEeC-CCCCccEEEEeC----CCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            344566788889776 378999998862    257999999999999999999999999999999999988777654443


Q ss_pred             -CCCCeEEEEEec
Q psy6405         125 -RGPPVEITLIKD  136 (548)
Q Consensus       125 -~g~~VtVtV~Rd  136 (548)
                       .+..+.++|.|.
T Consensus        78 ~~~~~v~l~v~R~   90 (96)
T 2qkv_A           78 GANGKVSMEVTRP   90 (96)
T ss_dssp             TCSSEEEEEEECC
T ss_pred             cCCCcEEEEEEeC
Confidence             456688888874

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.12  E-value=5.3e-10  Score=96.50  Aligned_cols=92  Identities=23%  Similarity=0.392  Sum_probs=75.5

Q ss_pred             eEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCC-CCCCEEEEECCeeccCccHHHHHHHh--hCCC
Q psy6405          51 VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRL-QKGDRILSINGKSMKGLTHKESLAIL--KRGP  127 (548)
Q Consensus        51 ~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrL-q~GDrILaINGv~V~~~s~~~aV~~l--k~g~  127 (548)
                      .++|.+.+. .+.+|||++.+..+  ..+++|..|.++|||+++| | ++||+|++|||.++.+++..++...+  ..+.
T Consensus         2 ~~~v~l~~~-~~~glG~~~~~~~~--~~~~~V~~v~~~spA~~aG-ll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~   77 (112)
T 1qau_A            2 VISVRLFKR-KVGGLGFLVKERVS--KPPVIISDLIRGGAAEQSG-LIQAGDIILAVNDRPLVDLSYDSALEVLRGIASE   77 (112)
T ss_dssp             EEEEEEECB-TTTBTSEEEEECSS--SSCEEEEEECTTSHHHHHT-CCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSS
T ss_pred             EEEEEEEcC-CCCceeEEEEecCC--CCCEEEEEeCCCChHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            467888776 47899999997643  3589999999999999999 7 99999999999999997666654444  3578


Q ss_pred             CeEEEEEecCcceeEEEec
Q psy6405         128 PVEITLIKDGAGLGFSLEG  146 (548)
Q Consensus       128 ~VtVtV~RdGkgLGfSItg  146 (548)
                      .+.+++.|++..+.+++..
T Consensus        78 ~v~l~v~R~g~~~~~~~~~   96 (112)
T 1qau_A           78 THVVLILRGPEGFTTHLET   96 (112)
T ss_dssp             SEEEEEEECCTTSEEEEEE
T ss_pred             cEEEEEEeCCcccceEeee
Confidence            8999999999887777764

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.12  E-value=2.1e-10  Score=98.42  Aligned_cols=88  Identities=30%  Similarity=0.568  Sum_probs=71.4

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhc-CCCCCCCEEEEECCeeccCccHHHHHHHhh-C
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRD-GRLQKGDRILSINGKSMKGLTHKESLAILK-R  125 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqA-GrLq~GDrILaINGv~V~~~s~~~aV~~lk-~  125 (548)
                      ...++.|.+.+. ...+|||++.++.+. ..+++|..|.++|||+++ | |++||+|++|||+++.++++.+++..++ .
T Consensus         7 ~~~~~~v~l~~~-~~~~lG~~l~~g~~~-~~~~~V~~V~~~s~A~~a~g-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~   83 (103)
T 2dc2_A            7 VGPIRKVLLLKE-DHEGLGISITGGKEH-GVPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQ   83 (103)
T ss_dssp             --CEEEEEEECC-SSSCCCEEEEEEGGG-TEEEEEEEECTTSHHHHHTC-CCSSEEEEEETTEESTTSCHHHHHHHHHHC
T ss_pred             CCCcEEEEEEeC-CCCccCEEEEeccCC-CCCEEEEEECCCCHHHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            456788999887 478999999987653 247899999999999996 8 9999999999999999999888776654 3


Q ss_pred             CCCeEEEEEecCc
Q psy6405         126 GPPVEITLIKDGA  138 (548)
Q Consensus       126 g~~VtVtV~RdGk  138 (548)
                      +..+.++|.|...
T Consensus        84 ~~~v~l~v~~~~~   96 (103)
T 2dc2_A           84 RGEIEFEVVYVAL   96 (103)
T ss_dssp             CSEEEEEEEECC-
T ss_pred             CCcEEEEEEecCC
Confidence            5578888887543

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=99.11  E-value=2.4e-10  Score=94.53  Aligned_cols=82  Identities=24%  Similarity=0.458  Sum_probs=65.3

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh---CC
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK---RG  126 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk---~g  126 (548)
                      ++++|.+.|.  ..+|||++.+..+  ..+++|..| ++|||+ +| |++||+|++|||+++.++++.+++..++   .+
T Consensus         3 ~~~~v~l~k~--~~g~G~~~~~~~~--~~~~~v~~v-~~spA~-aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g   75 (88)
T 3bpu_A            3 ELITVHIVKG--PMGFGFTIADSPG--GGGQRVKQI-VDSPRS-RG-LKEGDLIVEVNKKNVQALTHNQVVDMLVESPKG   75 (88)
T ss_dssp             EEEEEEEECB--TTBSSCEEEECTT--SSSEEEEEC-CC--CC-TT-CCTTCEEEEETTEECTTSCHHHHHHHHHTSCTT
T ss_pred             cEEEEEEEcC--CCceeEEEEecCC--CCcEEEEEe-cCChhH-hC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCC
Confidence            5688999997  5899999987543  357888876 999999 99 9999999999999999998777665544   47


Q ss_pred             CCeEEEEEecCc
Q psy6405         127 PPVEITLIKDGA  138 (548)
Q Consensus       127 ~~VtVtV~RdGk  138 (548)
                      ..+.++|.|++.
T Consensus        76 ~~v~l~v~R~g~   87 (88)
T 3bpu_A           76 SEVTLLVQRQTR   87 (88)
T ss_dssp             CEEEEEEEEECC
T ss_pred             CEEEEEEEeCCc
Confidence            789999988753

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.11  E-value=3e-10  Score=103.12  Aligned_cols=99  Identities=28%  Similarity=0.376  Sum_probs=72.5

Q ss_pred             CCCeEEEEEeeCCC--CCceEEEEEeCCCC-----------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCc
Q psy6405          48 TSEVSVVVLHRDLP--GNSVGITLAGGSDY-----------ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGL  114 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~--~~GLGfsIagG~d~-----------~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~  114 (548)
                      ....+.|.|.+...  ..+|||++.++.+.           ...+++|..|.++|||+++| |++||+|++|||+++.++
T Consensus        21 ~~~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~   99 (139)
T 2vz5_A           21 QSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMV   99 (139)
T ss_dssp             -CEEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTC
T ss_pred             CCceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEEcCCC
Confidence            34567788877531  24899999887652           23689999999999999999 999999999999999987


Q ss_pred             cHHHHHHHhh--CCCCeEEEEEecCcceeEEEecC
Q psy6405         115 THKESLAILK--RGPPVEITLIKDGAGLGFSLEGG  147 (548)
Q Consensus       115 s~~~aV~~lk--~g~~VtVtV~RdGkgLGfSItgg  147 (548)
                      +..+++..+.  .+..+.|+|.|++....+.+...
T Consensus       100 ~~~~~~~~l~~~~g~~v~l~v~R~g~~~~v~~~~~  134 (139)
T 2vz5_A          100 THDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSML  134 (139)
T ss_dssp             CHHHHHHHHCCTTCSEEEEEEEECC-------CCC
T ss_pred             CHHHHHHHHHhCCCCEEEEEEEECCEEEEEEEeec
Confidence            7777665554  46779999999887766665543

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.11  E-value=5.2e-10  Score=98.83  Aligned_cols=90  Identities=21%  Similarity=0.402  Sum_probs=72.0

Q ss_pred             CCCCCeEEEEEeeCCCCCceEEEEEeCCCCC--CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh
Q psy6405          46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYE--SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL  123 (548)
Q Consensus        46 ~~~~d~~tV~L~Kd~~~~GLGfsIagG~d~~--~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l  123 (548)
                      ....+.+.+.+.+.  ..+|||++.++.+..  ..+++|..|.++|||+++|+|++||+|++|||+++.+++..+++..+
T Consensus        26 ~~~~~~~~v~l~~~--~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l  103 (121)
T 2kom_A           26 KKIGKRLNIQLKKG--TEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLL  103 (121)
T ss_dssp             CCSCEEEEEEEECC--TTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHH
T ss_pred             ccCCeEEEEEEEcC--CCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHH
Confidence            33456677777776  689999999765321  25799999999999999999999999999999999998777765544


Q ss_pred             h---CCCCeEEEEEecC
Q psy6405         124 K---RGPPVEITLIKDG  137 (548)
Q Consensus       124 k---~g~~VtVtV~RdG  137 (548)
                      +   ++..+.|+|.|++
T Consensus       104 ~~~~~g~~v~l~v~R~g  120 (121)
T 2kom_A          104 RSTKMEGTVSLLVFRQE  120 (121)
T ss_dssp             HHCCSSCEEEEEEEECC
T ss_pred             hcCCCCCEEEEEEEeCC
Confidence            4   3678899998865

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.11  E-value=2.5e-10  Score=98.57  Aligned_cols=91  Identities=26%  Similarity=0.367  Sum_probs=77.0

Q ss_pred             CCCeEEEEEecCcceeEEEecCCCCCC-CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDSPF-GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s~l-G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      .....|++.|.+.++||+|.++..... +..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++++++..+
T Consensus        14 ~~~~~v~l~k~~~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~   93 (108)
T 2d92_A           14 PEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVP   93 (108)
T ss_dssp             SSCEEEEEEECSSCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSC
T ss_pred             CceEEEEEEECCCccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            345789999999999999987543211 1246999999999999999999999999999999999999999999999976


Q ss_pred             CCceeEEEEecc
Q psy6405         205 DGTIQDIKALGY  216 (548)
Q Consensus       205 g~~V~LlV~Ril  216 (548)
                      +..+.+++.|..
T Consensus        94 ~~~v~l~v~R~~  105 (108)
T 2d92_A           94 PGLVHLGICSGP  105 (108)
T ss_dssp             SEEEEEEEECCC
T ss_pred             CCeEEEEEEcCC
Confidence            668888888754

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=1.2e-10  Score=99.72  Aligned_cols=88  Identities=20%  Similarity=0.384  Sum_probs=73.1

Q ss_pred             CCCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-C
Q psy6405          47 GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-R  125 (548)
Q Consensus        47 ~~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~  125 (548)
                      ....+++|.+.|.  ..+|||++.++.+  ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++..+. .
T Consensus         5 ~~~~~r~v~l~k~--~~~~G~~l~~~~~--~~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   79 (106)
T 2eei_A            5 SSGQPRLCYLVKE--GGSYGFSLKTVQG--KKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKKS   79 (106)
T ss_dssp             CCSSSEEEEEECC--SSSCSCCEECCSS--CCSCEECCCCTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHH
T ss_pred             CCCCCEEEEEEEC--CCCCCEEEEeccC--CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            4567899999996  7899999986543  3589999999999999999 9999999999999999988888665443 4


Q ss_pred             CCCeEEEEEecCcc
Q psy6405         126 GPPVEITLIKDGAG  139 (548)
Q Consensus       126 g~~VtVtV~RdGkg  139 (548)
                      +..+.++|.|.+..
T Consensus        80 ~~~v~l~v~r~~~~   93 (106)
T 2eei_A           80 GSRVMFLLVDKETD   93 (106)
T ss_dssp             CSEEEEEECCTTTS
T ss_pred             CCeEEEEEEcCchh
Confidence            67788888886543

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.11  E-value=9.6e-10  Score=97.09  Aligned_cols=91  Identities=30%  Similarity=0.519  Sum_probs=78.6

Q ss_pred             CCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC-
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN-  204 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~-  204 (548)
                      +..+.|++.|...++||++.++...   ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++++|+..+ 
T Consensus        18 ~~~~~v~l~~~~~glG~~~~~g~~~---~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~   94 (123)
T 1ueq_A           18 GTFLSTTLKKSNMGFGFTIIGGDEP---DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPI   94 (123)
T ss_dssp             SEEEEEEEECCTTSCSEEEECCSSS---SCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCT
T ss_pred             CcEEEEEEEeCCCceeEEEecccCC---CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            4457888899989999999876532   236999999999999999999999999999999999999999999999874 


Q ss_pred             CCceeEEEEeccccC
Q psy6405         205 DGTIQDIKALGYDLN  219 (548)
Q Consensus       205 g~~V~LlV~RilDLr  219 (548)
                      +..+.+++.|...+.
T Consensus        95 g~~v~l~v~R~~~~~  109 (123)
T 1ueq_A           95 GQSVNLVLCRGYPLP  109 (123)
T ss_dssp             TCEEEEEEEESCCCC
T ss_pred             CCeEEEEEEeCCCCC
Confidence            778999999876544

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.10  E-value=5.2e-10  Score=95.80  Aligned_cols=94  Identities=36%  Similarity=0.525  Sum_probs=77.5

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCC--CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSP--FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~--lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      ..+.|++.|...++||+|.++....  .+..+++|..|.++|||+++|+|++||+|++|||.++.+.++.+++..++.. 
T Consensus         3 ~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-   81 (105)
T 2awx_A            3 KIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNT-   81 (105)
T ss_dssp             CEEEEEEECBTTBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSC-
T ss_pred             eEEEEEEEECCCCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            4577888898899999999875432  1234799999999999999999999999999999999999999999999876 


Q ss_pred             CCceeEEEEeccccCCC
Q psy6405         205 DGTIQDIKALGYDLNSL  221 (548)
Q Consensus       205 g~~V~LlV~RilDLr~~  221 (548)
                      +..+.+.+.|.......
T Consensus        82 ~~~v~l~v~R~~~~~~~   98 (105)
T 2awx_A           82 SDFVYLKVAKPTSMYIS   98 (105)
T ss_dssp             CSEEEEEEECCCC----
T ss_pred             CCeEEEEEEcCCCCCCc
Confidence            67889999887654433

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.10  E-value=4.7e-10  Score=96.91  Aligned_cols=85  Identities=20%  Similarity=0.249  Sum_probs=72.5

Q ss_pred             CCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       125 ~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      .|....|.+.|...++|++|+.+..     ..++|++|.++|+|++.|+|++||+|++|||+++.+++|.+++++|+..+
T Consensus         3 ~g~~k~V~l~K~~~~LG~tI~~~g~-----g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~   77 (95)
T 3gge_A            3 KGIEKEVNVYKSEDSLGLTITDNGV-----GYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELK   77 (95)
T ss_dssp             CEEEEEEEEECCSSCCCEEEECSSS-----SCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred             CCeEEEEEEEECCCCceEEEEcCCC-----CcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCC
Confidence            3566789999999999999986422     24899999999999999999999999999999999999999999999985


Q ss_pred             C-CceeEEEEe
Q psy6405         205 D-GTIQDIKAL  214 (548)
Q Consensus       205 g-~~V~LlV~R  214 (548)
                      . ..+++.+.+
T Consensus        78 ~g~~~~L~lv~   88 (95)
T 3gge_A           78 KEELFTMKLIE   88 (95)
T ss_dssp             TTCEEEEEEEE
T ss_pred             CCCEEEEEEEC
Confidence            4 456665544

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.10  E-value=6.7e-10  Score=91.17  Aligned_cols=83  Identities=22%  Similarity=0.439  Sum_probs=71.5

Q ss_pred             eEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC-CCc
Q psy6405         129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN-DGT  207 (548)
Q Consensus       129 VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~-g~~  207 (548)
                      ++|++.|...++||++.++...   ..+++|..|.++|||+++|+|++||+|++|||.++.++++.++.++++..+ +..
T Consensus         2 ~~v~l~k~~~g~G~~i~~~~~~---~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~   78 (85)
T 2i04_A            2 IHTKLRKSSRGFGFTVVGGDEP---DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGAS   78 (85)
T ss_dssp             EEEEEECBTTBSSEEEEECCST---TBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCE
T ss_pred             EEEEEEECCCCCCEEEEcccCC---CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCe
Confidence            6788899889999999875432   236999999999999999999999999999999999999999999998864 667


Q ss_pred             eeEEEEe
Q psy6405         208 IQDIKAL  214 (548)
Q Consensus       208 V~LlV~R  214 (548)
                      +.+.+.|
T Consensus        79 v~l~v~R   85 (85)
T 2i04_A           79 VDLELCR   85 (85)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            7777754

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.10  E-value=3.3e-10  Score=94.56  Aligned_cols=87  Identities=31%  Similarity=0.593  Sum_probs=70.0

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCC---CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-C
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDY---ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-R  125 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~---~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~  125 (548)
                      +..++.+.+.  ..+|||++.++.+.   ...+++|..|.++|||+++|+|++||+|++|||.++.++++.+++..+. .
T Consensus         4 ~~~~v~l~~~--~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   81 (97)
T 2iwn_A            4 ETFDVELTKN--VQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT   81 (97)
T ss_dssp             EEEEEEEECB--TTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTC
T ss_pred             EEEEEEEecC--CCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3456777665  68899999976431   2358999999999999999999999999999999999998777665443 5


Q ss_pred             CCCeEEEEEecCc
Q psy6405         126 GPPVEITLIKDGA  138 (548)
Q Consensus       126 g~~VtVtV~RdGk  138 (548)
                      +..+.++|.|++.
T Consensus        82 ~~~v~l~v~r~g~   94 (97)
T 2iwn_A           82 GQTVLLTLMRRGE   94 (97)
T ss_dssp             CSEEEEEEEEEEE
T ss_pred             CCeEEEEEEeCCC
Confidence            7778999988653

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.10  E-value=3.1e-10  Score=100.45  Aligned_cols=91  Identities=31%  Similarity=0.441  Sum_probs=76.8

Q ss_pred             CCCCeEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         125 RGPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       125 ~g~~VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      +..+..|++.|. +.++||+|.++.....+..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++..
T Consensus        22 ~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~  101 (118)
T 3b76_A           22 SMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRT  101 (118)
T ss_dssp             EEEEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSC
T ss_pred             CCCcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            344567778776 4789999998765433445799999999999999999999999999999999999999999999987


Q ss_pred             CCCceeEEEEecc
Q psy6405         204 NDGTIQDIKALGY  216 (548)
Q Consensus       204 ~g~~V~LlV~Ril  216 (548)
                       +..+.+++.|..
T Consensus       102 -~~~v~L~v~R~~  113 (118)
T 3b76_A          102 -SSSIVLKALEVK  113 (118)
T ss_dssp             -CSEEEEEEEEEE
T ss_pred             -CCeEEEEEEECC
Confidence             667888887753

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.10  E-value=6.2e-10  Score=92.49  Aligned_cols=83  Identities=25%  Similarity=0.292  Sum_probs=70.3

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      .+..|++.|...++||++..+...    .+++|..|.++|||+++| |++||+|++|||.++.++++.++.++++...+.
T Consensus         3 ~~r~v~l~r~~~g~G~~~~~~~~~----~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   77 (91)
T 1g9o_A            3 LPRLCCLEKGPNGYGFHLHGEKGK----LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNA   77 (91)
T ss_dssp             CCEEEEEECBTTBCCEEEEECTTC----SSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSE
T ss_pred             ccEEEEEEeCCCcccEEEEecCCC----CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCc
Confidence            467899999999999999876643    369999999999999999 999999999999999999999999999987544


Q ss_pred             ceeEEEEe
Q psy6405         207 TIQDIKAL  214 (548)
Q Consensus       207 ~V~LlV~R  214 (548)
                      .+.+++.|
T Consensus        78 ~~~~~~~r   85 (91)
T 1g9o_A           78 VRLLVVDP   85 (91)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEcC
Confidence            44444444

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.09  E-value=3.5e-10  Score=98.75  Aligned_cols=87  Identities=33%  Similarity=0.604  Sum_probs=73.2

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      ..++++|.+.|.  ..+|||++.++.+  ..+++|..|.++|||+++|+|++||+|++|||+++.++++..++..+. .+
T Consensus        12 ~~~~~~v~l~k~--~~glG~~l~~~~~--~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   87 (119)
T 1tp5_A           12 PREPRRIVIHRG--STGLGFNIVGGED--GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG   87 (119)
T ss_dssp             CCSCEEEEEECT--TSCCCEEEEECGG--GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             CCccEEEEEEEC--CCCccEEEecCCC--CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            457899999997  4789999998654  358999999999999999999999999999999999998777654443 57


Q ss_pred             CCeEEEEEecCc
Q psy6405         127 PPVEITLIKDGA  138 (548)
Q Consensus       127 ~~VtVtV~RdGk  138 (548)
                      ..+.++|.|.+.
T Consensus        88 ~~v~l~v~r~~~   99 (119)
T 1tp5_A           88 QTVTIIAQYKPE   99 (119)
T ss_dssp             SEEEEEEEECHH
T ss_pred             CeEEEEEEECCc
Confidence            778999988653

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.09  E-value=1.2e-09  Score=92.63  Aligned_cols=89  Identities=33%  Similarity=0.501  Sum_probs=76.6

Q ss_pred             eEEEEEecCcceeEEEecCCCCCC--CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       129 VtVtV~RdGkgLGfSItgg~~s~l--G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      ..|++.|.+.++||++.++...+.  +..+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++.. +.
T Consensus         6 ~~v~l~k~~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g~   84 (102)
T 2i1n_A            6 EEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEA-GP   84 (102)
T ss_dssp             EEEEEECBTTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHS-CS
T ss_pred             EEEEEEECCCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CC
Confidence            567888988999999998765432  235799999999999999999999999999999999999999999999885 78


Q ss_pred             ceeEEEEecccc
Q psy6405         207 TIQDIKALGYDL  218 (548)
Q Consensus       207 ~V~LlV~RilDL  218 (548)
                      .+.+.+.|....
T Consensus        85 ~v~l~v~R~~~~   96 (102)
T 2i1n_A           85 VVRLVVRRRQPP   96 (102)
T ss_dssp             EEEEEEEEECCC
T ss_pred             eEEEEEEeCCCC
Confidence            899999886543

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.09  E-value=5.6e-10  Score=93.64  Aligned_cols=81  Identities=28%  Similarity=0.499  Sum_probs=66.2

Q ss_pred             EEEEEeeCCCCCceEEEEEeCCCC-------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh
Q psy6405          52 SVVVLHRDLPGNSVGITLAGGSDY-------ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK  124 (548)
Q Consensus        52 ~tV~L~Kd~~~~GLGfsIagG~d~-------~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk  124 (548)
                      .++.+.+.   .+|||++.++.+.       ...+++|..|.++|||++ | |++||+|++|||+++.++++.+++..+.
T Consensus         5 ~~v~l~~~---~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~   79 (95)
T 1mfg_A            5 IRVRVEKD---PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLK   79 (95)
T ss_dssp             EEEEEECS---SSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCBHHHHHHHHH
T ss_pred             EEEEECCC---CCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-C-CCCCCEEEEECCEEcCCCCHHHHHHHhh
Confidence            45666665   4899999987641       245899999999999999 9 9999999999999999998877665443


Q ss_pred             -CCCCeEEEEEecC
Q psy6405         125 -RGPPVEITLIKDG  137 (548)
Q Consensus       125 -~g~~VtVtV~RdG  137 (548)
                       .+..+.++|.|+.
T Consensus        80 ~~~~~v~l~v~R~~   93 (95)
T 1mfg_A           80 TFQNTVELIIVREV   93 (95)
T ss_dssp             HCCSEEEEEEEEEC
T ss_pred             cCCCeEEEEEEeCC
Confidence             5778899998864

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.09  E-value=5.4e-10  Score=97.16  Aligned_cols=89  Identities=29%  Similarity=0.545  Sum_probs=71.8

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCC------CCeEEEEEcCCChhhh-cCCCCCCCEEEEECCeeccCccHHHHH
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYES------KEITVHKVISGTPADR-DGRLQKGDRILSINGKSMKGLTHKESL  120 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~------~gVvVs~V~pGSPAaq-AGrLq~GDrILaINGv~V~~~s~~~aV  120 (548)
                      ..++++|.+.|.. ..+|||++.++.+...      .+++|..|.++|||++ +| |++||+|++|||+++.++++.+++
T Consensus         8 ~~~~~~v~l~~~~-~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~ag-L~~GD~I~~ing~~v~~~~~~~~~   85 (114)
T 1uew_A            8 SLQTSDVVIHRKE-NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAK-LKVGDRILAVNGQSIINMPHADIV   85 (114)
T ss_dssp             CCCCEEEEEECCT-TSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSS-CCTTCBEEEETTBCTTTSCHHHHH
T ss_pred             cccceEEEEEECC-CCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCC-CCCCCEEEEECCEECCCCCHHHHH
Confidence            4567899999873 6899999998654321      1569999999999999 99 999999999999999998777765


Q ss_pred             HHhh-CCCCeEEEEEecCc
Q psy6405         121 AILK-RGPPVEITLIKDGA  138 (548)
Q Consensus       121 ~~lk-~g~~VtVtV~RdGk  138 (548)
                      ..+. .+..+.|+|.|.+.
T Consensus        86 ~~l~~~g~~v~l~v~r~~~  104 (114)
T 1uew_A           86 KLIKDAGLSVTLRIIPQEE  104 (114)
T ss_dssp             HHHHHTTTEEEEEECCCSC
T ss_pred             HHHHcCCCeEEEEEEeCCc
Confidence            4443 57788898888665

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.09  E-value=1.8e-10  Score=102.69  Aligned_cols=85  Identities=22%  Similarity=0.499  Sum_probs=68.9

Q ss_pred             EEEEeeCCCCCceEEEEEeCCCCC---CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-----
Q psy6405          53 VVVLHRDLPGNSVGITLAGGSDYE---SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-----  124 (548)
Q Consensus        53 tV~L~Kd~~~~GLGfsIagG~d~~---~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-----  124 (548)
                      .+.+.+. ...+|||++.++.+..   ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++     
T Consensus        28 ~v~l~k~-~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~  106 (127)
T 1wg6_A           28 EIPLNDS-GSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSM  106 (127)
T ss_dssp             EEECSSS-TTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEeeC-CCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhcc
Confidence            3444434 4899999999875421   247999999999999999999999999999999999999888766554     


Q ss_pred             ---CCCCeEEEEEecCc
Q psy6405         125 ---RGPPVEITLIKDGA  138 (548)
Q Consensus       125 ---~g~~VtVtV~RdGk  138 (548)
                         .+..+.|+|.|.+.
T Consensus       107 ~g~~~~~v~l~v~R~~~  123 (127)
T 1wg6_A          107 EGNIRGMIQLVILRRSG  123 (127)
T ss_dssp             HHHHTCEEEEEEEECSC
T ss_pred             ccCCCCEEEEEEEeCCC
Confidence               36789999998654

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.09  E-value=2.5e-10  Score=96.44  Aligned_cols=83  Identities=30%  Similarity=0.478  Sum_probs=65.4

Q ss_pred             EEEEeeCCCCCceEEEEEeCCCCCC------CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-C
Q psy6405          53 VVVLHRDLPGNSVGITLAGGSDYES------KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-R  125 (548)
Q Consensus        53 tV~L~Kd~~~~GLGfsIagG~d~~~------~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~  125 (548)
                      ++.+.+.  ..+|||++.++.....      .+++|..|.++|||+++| |++||+|++|||.++.++++.+++..+. +
T Consensus         5 ~v~l~~~--~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~   81 (99)
T 3khf_A            5 PIVIHSS--GKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKS   81 (99)
T ss_dssp             CEEEEC---CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHHS
T ss_pred             CEEEEeC--CCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            3556665  6899999986542211      156899999999999999 9999999999999999888887655444 6


Q ss_pred             CCCeEEEEEecCc
Q psy6405         126 GPPVEITLIKDGA  138 (548)
Q Consensus       126 g~~VtVtV~RdGk  138 (548)
                      +..+.+++.|.+.
T Consensus        82 g~~v~l~v~r~~~   94 (99)
T 3khf_A           82 GNKISLRTTALEN   94 (99)
T ss_dssp             CSEEEEEEECSCS
T ss_pred             CCEEEEEEEECCC
Confidence            7889999998665

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.09  E-value=4.5e-10  Score=97.95  Aligned_cols=90  Identities=24%  Similarity=0.385  Sum_probs=75.0

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh-hCCC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL-KRGP  127 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l-k~g~  127 (548)
                      .+++.|.+.+.  ..+|||++.++.+   .+++|..|.++|||+++| |++||+|++|||+++.++++.+++... ..+.
T Consensus        18 ~~~~~v~l~~~--~~~lG~~~~~~~~---~gv~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~   91 (117)
T 1uit_A           18 EEPRHVKVQKG--SEPLGISIVSGEK---GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQCD   91 (117)
T ss_dssp             CCCEEEEEECS--SCCCCEEEEECTT---SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSCCS
T ss_pred             CCCEEEEEEeC--CCCccEEEEccCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            46788999887  4899999997653   589999999999999999 999999999999999999888866433 4577


Q ss_pred             CeEEEEEecCcceeEEE
Q psy6405         128 PVEITLIKDGAGLGFSL  144 (548)
Q Consensus       128 ~VtVtV~RdGkgLGfSI  144 (548)
                      .+.++|.|++..+.+.+
T Consensus        92 ~v~l~v~r~~~~~~~~~  108 (117)
T 1uit_A           92 TITILAQYNPHVHQLSS  108 (117)
T ss_dssp             EEEEEECCCSCCCCCCC
T ss_pred             eEEEEEEECCchhhhhh
Confidence            89999999877654433

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.09  E-value=4.5e-10  Score=105.70  Aligned_cols=86  Identities=31%  Similarity=0.533  Sum_probs=71.8

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEe---CCCC--CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAG---GSDY--ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL  123 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIag---G~d~--~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l  123 (548)
                      .+.+.|.+.|.  ..+|||++.+   +.+.  ...+++|..|.++|||+++|+|++||+|++|||++|.++++.+++..+
T Consensus        79 ~~~~~v~l~k~--~~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l  156 (170)
T 3egg_C           79 LELFPVELEKD--SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVL  156 (170)
T ss_dssp             SEEEEEEEECB--TTBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHH
T ss_pred             ceEEEEEEEeC--CCeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            45678888887  4799999998   3332  235799999999999999999999999999999999999999877666


Q ss_pred             h-CCCCeEEEEEec
Q psy6405         124 K-RGPPVEITLIKD  136 (548)
Q Consensus       124 k-~g~~VtVtV~Rd  136 (548)
                      + .+..+.|+|.|+
T Consensus       157 ~~~g~~v~L~V~R~  170 (170)
T 3egg_C          157 RNTKGRVRFMIGRE  170 (170)
T ss_dssp             HHCCSEEEEEEEEC
T ss_pred             HcCCCEEEEEEEeC
Confidence            5 567788888874

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.09  E-value=1.1e-09  Score=97.13  Aligned_cols=98  Identities=29%  Similarity=0.424  Sum_probs=81.0

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGP  127 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~  127 (548)
                      .+..+++.+.... ..+|||++.++.+. ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++..++.+.
T Consensus        18 ~g~~~~v~v~~~~-~~~lG~~~~~~~~~-~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   94 (128)
T 1uf1_A           18 GGDEKKVNLVLGD-GRSLGLTIRGGAEY-GLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSSR   94 (128)
T ss_dssp             CSSEEEEEEECCS-SCCCCEEEECCTTT-TCCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCS
T ss_pred             CCcEEEEEEEECC-CCccCEEEECcccC-CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            4466778777652 47899999976543 2479999999999999999 9999999999999999998877777777788


Q ss_pred             CeEEEEEecCcceeEEEecCC
Q psy6405         128 PVEITLIKDGAGLGFSLEGGK  148 (548)
Q Consensus       128 ~VtVtV~RdGkgLGfSItgg~  148 (548)
                      .+.|+|.|.+....++++...
T Consensus        95 ~v~l~v~R~g~~~~~~v~~~~  115 (128)
T 1uf1_A           95 HLILTVKDVGRLPHARTTVDE  115 (128)
T ss_dssp             EEEEEEECCSCCSSCSCCCCS
T ss_pred             eEEEEEEECCccccccccccc
Confidence            899999999887777766543

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.09  E-value=3.9e-10  Score=96.91  Aligned_cols=82  Identities=23%  Similarity=0.392  Sum_probs=65.9

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCC
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPP  128 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~  128 (548)
                      -++.+.+.|+ ++.+|||++....+   .+++|..|.++|||+++|+|++||+|++|||+++.+++..++...++ .+.+
T Consensus        12 ~~~~v~l~K~-~~~~lG~~l~~~~~---~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~   87 (97)
T 2ejy_A           12 MVRLIQFEKV-TEEPMGICLKLNEK---QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGM   87 (97)
T ss_dssp             -CEEEEEEEC-SSSCCSEEEEECTT---CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEE
T ss_pred             ccEEEEEEeC-CCCCeeEEEEeCCC---CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4688999997 47899999986432   58999999999999999999999999999999999866666554443 3456


Q ss_pred             eEEEEEe
Q psy6405         129 VEITLIK  135 (548)
Q Consensus       129 VtVtV~R  135 (548)
                      +.++|.+
T Consensus        88 v~L~V~~   94 (97)
T 2ejy_A           88 ISLKVIP   94 (97)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEE
Confidence            7777664

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.09  E-value=9.8e-11  Score=99.33  Aligned_cols=89  Identities=27%  Similarity=0.563  Sum_probs=73.0

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      ..+.+.+.+.+.  ..+|||++.++.+. ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++ .+
T Consensus         9 ~~~~~~v~l~~~--~~g~G~~~~~~~~~-~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   85 (103)
T 1wfv_A            9 DFDYFTVDMEKG--AKGFGFSIRGGREY-KMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGG   85 (103)
T ss_dssp             CSCCEECCEECC--TTSSSBCCEEETTT-TEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHC
T ss_pred             CceEEEEEEecC--CCcCCEEEeccccC-CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            445677788776  57899999987643 247999999999999999999999999999999999998777665543 57


Q ss_pred             CCeEEEEEecCcc
Q psy6405         127 PPVEITLIKDGAG  139 (548)
Q Consensus       127 ~~VtVtV~RdGkg  139 (548)
                      ..+.++|.|++..
T Consensus        86 ~~v~l~v~R~~~~   98 (103)
T 1wfv_A           86 RRVRLLLKRGTGS   98 (103)
T ss_dssp             SEECEEEECTTCS
T ss_pred             CeEEEEEEECCCC
Confidence            7889999887653

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.08  E-value=2.1e-10  Score=100.34  Aligned_cols=88  Identities=24%  Similarity=0.445  Sum_probs=72.7

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhc--CCCCCCCEEEEECCeeccCccHHHHHHHhhC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRD--GRLQKGDRILSINGKSMKGLTHKESLAILKR  125 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqA--GrLq~GDrILaINGv~V~~~s~~~aV~~lk~  125 (548)
                      ...+++|.+.|.. .++|||++.++.+. ..+++|..|.++|||+++  | |++||+|++|||+++.++++.+++..++.
T Consensus        13 ~~~~~~v~l~k~~-~~~~G~~l~gg~~~-~~~v~V~~V~~~spA~~a~gG-L~~GD~Il~ing~~v~~~~~~~~~~~~~~   89 (119)
T 2cs5_A           13 HDNLVLIRMKPDE-NGRFGFNVKGGYDQ-KMPVIVSRVAPGTPADLCVPR-LNEGDQVVLINGRDIAEHTHDQVVLFIKA   89 (119)
T ss_dssp             SSCCEEEEECCCS-SSCCSEEEEEEGGG-TEEEEEEEECSSSTTTSSSSC-CCTTCEEEEETTBCTTSSCHHHHHHHHHH
T ss_pred             CCCeEEEEEEeCC-CCCcCEEEecccCC-CCCeEEEEECCCCHHHHhhcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            4567899999973 67899999987653 347999999999999999  7 99999999999999999988887655543


Q ss_pred             C-----CCeEEEEEecCc
Q psy6405         126 G-----PPVEITLIKDGA  138 (548)
Q Consensus       126 g-----~~VtVtV~RdGk  138 (548)
                      .     ..+.++|.|...
T Consensus        90 ~~~~~~~~v~l~v~R~~~  107 (119)
T 2cs5_A           90 SCERHSGELMLLVRPNAV  107 (119)
T ss_dssp             HHHCCSSCEEEEEECCCC
T ss_pred             ccccCCCEEEEEEEcccc
Confidence            2     478898888643

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=1.7e-09  Score=94.81  Aligned_cols=93  Identities=26%  Similarity=0.464  Sum_probs=78.8

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCC--CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~l--G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      ....|++.|...++||+|..+...+.  ...+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++.. 
T Consensus        17 ~~~~v~l~r~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~-   95 (120)
T 2eno_A           17 TEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA-   95 (120)
T ss_dssp             EEEEEEEECCSSSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHH-
T ss_pred             ceEEEEEEECCCCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            34678888988999999998655321  234799999999999999999999999999999999999999999999886 


Q ss_pred             CCceeEEEEeccccCC
Q psy6405         205 DGTIQDIKALGYDLNS  220 (548)
Q Consensus       205 g~~V~LlV~RilDLr~  220 (548)
                      +..+.+++.|......
T Consensus        96 g~~v~l~v~R~~~~~~  111 (120)
T 2eno_A           96 GYAVSLRVQHRLQVQN  111 (120)
T ss_dssp             CSEEEEEEEEEEECCC
T ss_pred             CCeEEEEEEeCCcCCC
Confidence            6789999988766443

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.07  E-value=4.4e-10  Score=100.82  Aligned_cols=79  Identities=32%  Similarity=0.532  Sum_probs=66.0

Q ss_pred             CCCceEEEEEeCCCCC--CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh---CCCCeEEEEEe
Q psy6405          61 PGNSVGITLAGGSDYE--SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK---RGPPVEITLIK  135 (548)
Q Consensus        61 ~~~GLGfsIagG~d~~--~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk---~g~~VtVtV~R  135 (548)
                      ...+|||++.+|.+..  ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++   .+..+.++|.|
T Consensus        46 ~~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R  125 (131)
T 1wfg_A           46 SGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSR  125 (131)
T ss_dssp             SCTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEE
T ss_pred             CCCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEc
Confidence            4789999999876543  237999999999999999999999999999999999988888765553   45779999998


Q ss_pred             cCcc
Q psy6405         136 DGAG  139 (548)
Q Consensus       136 dGkg  139 (548)
                      .+..
T Consensus       126 ~g~~  129 (131)
T 1wfg_A          126 SGPS  129 (131)
T ss_dssp             ECSC
T ss_pred             CCCC
Confidence            7653

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.07  E-value=5.1e-10  Score=105.30  Aligned_cols=90  Identities=24%  Similarity=0.416  Sum_probs=76.6

Q ss_pred             CCCCeEEEEEecCcceeEEEec---CCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHH
Q psy6405         125 RGPPVEITLIKDGAGLGFSLEG---GKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLK  201 (548)
Q Consensus       125 ~g~~VtVtV~RdGkgLGfSItg---g~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLr  201 (548)
                      ....+.|++.|...++||+|.+   +.....+..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+|+
T Consensus        78 ~~~~~~v~l~k~~~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~  157 (170)
T 3egg_C           78 RLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLR  157 (170)
T ss_dssp             TSEEEEEEEECBTTBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHH
T ss_pred             CceEEEEEEEeCCCeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3455788889988999999988   3322223357999999999999999999999999999999999999999999999


Q ss_pred             HcCCCceeEEEEec
Q psy6405         202 KLNDGTIQDIKALG  215 (548)
Q Consensus       202 s~~g~~V~LlV~Ri  215 (548)
                      .. +..+.++|.|.
T Consensus       158 ~~-g~~v~L~V~R~  170 (170)
T 3egg_C          158 NT-KGRVRFMIGRE  170 (170)
T ss_dssp             HC-CSEEEEEEEEC
T ss_pred             cC-CCEEEEEEEeC
Confidence            95 67899998873

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.07  E-value=6.1e-10  Score=95.66  Aligned_cols=92  Identities=26%  Similarity=0.458  Sum_probs=78.9

Q ss_pred             hCCCCeEEEEEecCcceeEEEe-----cCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy6405         124 KRGPPVEITLIKDGAGLGFSLE-----GGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWS  198 (548)
Q Consensus       124 k~g~~VtVtV~RdGkgLGfSIt-----gg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~Eave  198 (548)
                      .++..++|++.|.+.++||++.     ++........+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.
T Consensus         6 ~~~~~~~v~l~k~~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~   85 (108)
T 1q7x_A            6 KPGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE   85 (108)
T ss_dssp             CSSSEEEEEEESSSCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHH
T ss_pred             CCCcEEEEEEEECCCCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            3466788999999999999998     65544333457999999999999999999999999999999999888889999


Q ss_pred             HHHHcCCCceeEEEEecc
Q psy6405         199 LLKKLNDGTIQDIKALGY  216 (548)
Q Consensus       199 lLrs~~g~~V~LlV~Ril  216 (548)
                      +++.. +..+.+++.|..
T Consensus        86 ~~~~~-g~~v~l~v~R~~  102 (108)
T 1q7x_A           86 TLRNT-GQVVHLLLEKGQ  102 (108)
T ss_dssp             HHHHT-TSEEEEEEECCC
T ss_pred             HHHcC-CCeEEEEEEeCC
Confidence            99886 778899998864

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.07  E-value=1e-09  Score=96.54  Aligned_cols=92  Identities=36%  Similarity=0.537  Sum_probs=77.8

Q ss_pred             CCCCeEEEEEecCcceeEEEecCCCCC--CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHH
Q psy6405         125 RGPPVEITLIKDGAGLGFSLEGGKDSP--FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK  202 (548)
Q Consensus       125 ~g~~VtVtV~RdGkgLGfSItgg~~s~--lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs  202 (548)
                      +.....|++.|...++||+|.++...+  .+..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++++++.
T Consensus        22 ~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~  101 (117)
T 2byg_A           22 SMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKN  101 (117)
T ss_dssp             EEEEEEEEEECBTTBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             CCceEEEEEEeCCCCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            344577888888899999999876432  123579999999999999999999999999999999999999999999997


Q ss_pred             cCCCceeEEEEeccc
Q psy6405         203 LNDGTIQDIKALGYD  217 (548)
Q Consensus       203 ~~g~~V~LlV~RilD  217 (548)
                      . +..+.+++.|...
T Consensus       102 ~-g~~v~l~v~R~~~  115 (117)
T 2byg_A          102 T-SEVVYLKVGKPTT  115 (117)
T ss_dssp             C-CSEEEEEEEEEEE
T ss_pred             C-CCeEEEEEEeCCc
Confidence            6 6788999988643

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.07  E-value=4.7e-10  Score=100.01  Aligned_cols=87  Identities=24%  Similarity=0.497  Sum_probs=72.4

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC--
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR--  125 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~--  125 (548)
                      .++..++.+.+.  ..+|||++.++.+ ...+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++.  
T Consensus        16 ~g~~~~v~l~~~--~~g~G~~i~g~~~-~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~   92 (129)
T 2kpk_A           16 KGKFIHTKLRKS--SRGFGFTVVGGDE-PDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIP   92 (129)
T ss_dssp             CSEEEEEEEEEC--SSCCSEEEEEEEE-TTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSC
T ss_pred             CCcEEEEEEEEC--CCcccEEEeCccC-CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            466788899987  5799999998654 23469999999999999999999999999999999999888776655542  


Q ss_pred             -CCCeEEEEEecC
Q psy6405         126 -GPPVEITLIKDG  137 (548)
Q Consensus       126 -g~~VtVtV~RdG  137 (548)
                       +..+.++|.|+.
T Consensus        93 ~g~~v~l~v~R~~  105 (129)
T 2kpk_A           93 IGASVDLELCRGY  105 (129)
T ss_dssp             TTEEEEEEEEECS
T ss_pred             CCCeEEEEEEeCC
Confidence             667899998865

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.07  E-value=1.4e-10  Score=100.37  Aligned_cols=88  Identities=31%  Similarity=0.555  Sum_probs=71.9

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCC--------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHH
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDY--------ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL  120 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~--------~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV  120 (548)
                      ..+++|.+.|. ++.+|||++.++.+.        ...+++|..|.++|||+++|+|++||+|++|||+++.++++.+++
T Consensus         8 ~~~~~v~l~k~-~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~   86 (111)
T 1uju_A            8 PGLRELCIQKA-PGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAV   86 (111)
T ss_dssp             CSSSCEEEECC-TTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHH
T ss_pred             CccEEEEEEEC-CCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            44677888887 478999999987642        235799999999999999999999999999999999998888877


Q ss_pred             HHhh-CCCCeEEEEEecC
Q psy6405         121 AILK-RGPPVEITLIKDG  137 (548)
Q Consensus       121 ~~lk-~g~~VtVtV~RdG  137 (548)
                      ..++ .+..+.++|.|..
T Consensus        87 ~~l~~~g~~v~l~v~r~~  104 (111)
T 1uju_A           87 QLLRSVGDTLTVLVCDGF  104 (111)
T ss_dssp             HHHSSCSSEEEECCCCCC
T ss_pred             HHHHcCCCeEEEEEEECC
Confidence            6655 4566777777643

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.07  E-value=4.2e-10  Score=97.58  Aligned_cols=83  Identities=27%  Similarity=0.450  Sum_probs=68.3

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCC
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPP  128 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~  128 (548)
                      +..+|.|.++ ...++||++.+.    ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++ .+..
T Consensus         2 ~~~~v~L~k~-~~~glG~~i~~~----~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~   76 (106)
T 2la8_A            2 EKFNVDLMKK-AGKELGLSLSPN----EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGK   76 (106)
T ss_dssp             EEEEEEECCB-SSSTTCCEEEEC----SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSC
T ss_pred             eEEEEEEEeC-CCCccCEEEEeC----CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCe
Confidence            3567888866 378999999862    257999999999999999999999999999999999988877655443 4567


Q ss_pred             eEEEEEecC
Q psy6405         129 VEITLIKDG  137 (548)
Q Consensus       129 VtVtV~RdG  137 (548)
                      +.++|.|..
T Consensus        77 v~l~v~R~~   85 (106)
T 2la8_A           77 VSMEVTRPK   85 (106)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEeCC
Confidence            888888853

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.07  E-value=1e-09  Score=92.20  Aligned_cols=90  Identities=27%  Similarity=0.502  Sum_probs=75.9

Q ss_pred             CeEEEEEecCcceeEEEecCCCCC-CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         128 PVEITLIKDGAGLGFSLEGGKDSP-FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       128 ~VtVtV~RdGkgLGfSItgg~~s~-lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      .+.|++.|++.++||++.++.... ....+++|..|.++|||+++|+|++||+|++|||.++.++++.++.++++. .+.
T Consensus         4 ~~~v~l~k~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~   82 (97)
T 2jil_A            4 TVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQ   82 (97)
T ss_dssp             EEEEEEECBTTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCS
T ss_pred             EEEEEEEeCCCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCC
Confidence            467888888889999998765321 112369999999999999999999999999999999999999999999998 688


Q ss_pred             ceeEEEEecccc
Q psy6405         207 TIQDIKALGYDL  218 (548)
Q Consensus       207 ~V~LlV~RilDL  218 (548)
                      .+.+.+.|..+.
T Consensus        83 ~v~l~v~R~~~~   94 (97)
T 2jil_A           83 EAALLIEYDVSE   94 (97)
T ss_dssp             EEEEEEEEECCC
T ss_pred             eEEEEEEeCCCc
Confidence            899999987543

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.06  E-value=3.5e-10  Score=100.06  Aligned_cols=93  Identities=30%  Similarity=0.473  Sum_probs=73.5

Q ss_pred             CCCCeEEEEEecC-cceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         125 RGPPVEITLIKDG-AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       125 ~g~~VtVtV~RdG-kgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      +.....|++.|.. .++||+|.++.....+..+++|..|.++|||+++|.|++||+|++|||+++.++++.+++.+++..
T Consensus        22 ~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~  101 (120)
T 2iwo_A           22 SMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNA  101 (120)
T ss_dssp             ---CEEEEEEC----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHC
T ss_pred             CCCcEEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3456788888866 489999988654322234699999999999999944999999999999999999999999999997


Q ss_pred             CCCceeEEEEecccc
Q psy6405         204 NDGTIQDIKALGYDL  218 (548)
Q Consensus       204 ~g~~V~LlV~RilDL  218 (548)
                       +..+.+++.|..+.
T Consensus       102 -~~~v~l~v~r~g~~  115 (120)
T 2iwo_A          102 -SGSIEMQVVAGGDV  115 (120)
T ss_dssp             -CSEEEEEEECCTTS
T ss_pred             -CCeEEEEEEECCcc
Confidence             55689999887654

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.06  E-value=2.7e-10  Score=96.11  Aligned_cols=85  Identities=18%  Similarity=0.351  Sum_probs=67.7

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh--CC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK--RG  126 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk--~g  126 (548)
                      ..++.+.+.+.  ..+|||++.++.+  ..+++|..|.++|||+++| |++||+|++|||+++.+++..++...+.  .+
T Consensus         8 ~~~~~~~l~~~--~~g~G~~~~~~~~--~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   82 (98)
T 2jxo_A            8 LRPRLCTMKKG--PSGYGFNLHSDKS--KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGD   82 (98)
T ss_dssp             SCCEEEEEECT--TTCCCEEEECCCS--SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTT
T ss_pred             CCcEEEEEEeC--CCcccEEEEecCC--CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            34678888887  5899999987653  3589999999999999999 9999999999999999976666554443  34


Q ss_pred             CCeEEEEEecCc
Q psy6405         127 PPVEITLIKDGA  138 (548)
Q Consensus       127 ~~VtVtV~RdGk  138 (548)
                      ..+.++|.|++.
T Consensus        83 ~~~~l~v~R~g~   94 (98)
T 2jxo_A           83 ETKLLVVDRETD   94 (98)
T ss_dssp             EEEEEECCHHHH
T ss_pred             cEEEEEEECCch
Confidence            456677777654

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.06  E-value=9.6e-10  Score=91.32  Aligned_cols=83  Identities=22%  Similarity=0.305  Sum_probs=73.7

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      .+..|++.|...++||++......    .+++|..|.++|||+++| |++||+|++|||.++.++++.++.++++.. +.
T Consensus         4 ~~r~v~l~k~~~g~G~~~~~~~~~----~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~   77 (90)
T 2he4_A            4 RPRLCHLRKGPQGYGFNLHSDKSR----PGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKAR-ED   77 (90)
T ss_dssp             CCEEEEEECBTTBCCEEEEECSSS----SSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTSCHHHHHHHHTTS-SS
T ss_pred             CcEEEEEEECCCCccEEEEccCCC----CCEEEEEECCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CC
Confidence            467889999989999999876542    369999999999999999 999999999999999999999999999886 77


Q ss_pred             ceeEEEEec
Q psy6405         207 TIQDIKALG  215 (548)
Q Consensus       207 ~V~LlV~Ri  215 (548)
                      .+.+.+.|.
T Consensus        78 ~v~l~v~r~   86 (90)
T 2he4_A           78 EARLLVVGP   86 (90)
T ss_dssp             EEEEEEECC
T ss_pred             cEEEEEEcc
Confidence            888888875

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.06  E-value=1.5e-09  Score=91.94  Aligned_cols=89  Identities=27%  Similarity=0.469  Sum_probs=76.3

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCC--CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~l--G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      ....|++.|...++||++.++.....  ...+++|..|.++|||+++|+|+.||+|++|||.++.++++.++..+++.. 
T Consensus         7 ~~~~v~l~~~~~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-   85 (101)
T 2jik_A            7 TEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA-   85 (101)
T ss_dssp             EEEEEEEECCTTCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTC-
T ss_pred             ccEEEEEEeCCCCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-
Confidence            45778899988999999998765432  234799999999999999999999999999999999999999999999876 


Q ss_pred             CCceeEEEEecc
Q psy6405         205 DGTIQDIKALGY  216 (548)
Q Consensus       205 g~~V~LlV~Ril  216 (548)
                      +..+.+++.|..
T Consensus        86 g~~v~l~v~R~~   97 (101)
T 2jik_A           86 GYAVSLRVQHRL   97 (101)
T ss_dssp             CSEEEEEEEEES
T ss_pred             CCeEEEEEEeCC
Confidence            677888888754

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.06  E-value=3e-10  Score=100.02  Aligned_cols=91  Identities=36%  Similarity=0.600  Sum_probs=76.5

Q ss_pred             CCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      .....|++.|...++||++.++...+.+..+++|..|.++|||+++|+|++||+|++|||.++.++++.+++++++.. +
T Consensus        24 ~~~~~v~L~k~~~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~-~  102 (117)
T 2fne_A           24 PQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT-K  102 (117)
T ss_dssp             CEEEEEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC-C
T ss_pred             CccEEEEEEeCCCcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-C
Confidence            345778899988999999987643322234699999999999999999999999999999999999999999999987 4


Q ss_pred             CceeEEEEeccc
Q psy6405         206 GTIQDIKALGYD  217 (548)
Q Consensus       206 ~~V~LlV~RilD  217 (548)
                      ..+.+++.|...
T Consensus       103 ~~v~l~v~R~g~  114 (117)
T 2fne_A          103 GTVTLMVLSSDE  114 (117)
T ss_dssp             SSEEEEEEECSC
T ss_pred             CeEEEEEEeCCc
Confidence            568998888643

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.06  E-value=9.4e-10  Score=94.79  Aligned_cols=92  Identities=23%  Similarity=0.376  Sum_probs=79.4

Q ss_pred             CCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       125 ~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      .+..+.|++.|...++||++..+.....+..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++.. 
T Consensus         6 ~~~~~~v~l~~~~~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-   84 (110)
T 1um1_A            6 SGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHG-   84 (110)
T ss_dssp             CCCEEEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTC-
T ss_pred             CCcEEEEEEEECCCccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            3556888899988999999988765443445799999999999999999999999999999999999999999999886 


Q ss_pred             CCceeEEEEeccc
Q psy6405         205 DGTIQDIKALGYD  217 (548)
Q Consensus       205 g~~V~LlV~RilD  217 (548)
                      +..+.+.+.|...
T Consensus        85 ~~~v~l~v~R~~~   97 (110)
T 1um1_A           85 GKKMRFLVAKSDV   97 (110)
T ss_dssp             CSEEEEEEECCCH
T ss_pred             CCeEEEEEEeCCc
Confidence            7788999988643

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.06  E-value=8.1e-10  Score=98.49  Aligned_cols=91  Identities=24%  Similarity=0.470  Sum_probs=78.3

Q ss_pred             CCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC-
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN-  204 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~-  204 (548)
                      +..+.|++.|.+.++||++.++...   ..+++|..|.++|+|+++|+|+.||+|++|||+++.++++.+++++|+..+ 
T Consensus        17 g~~~~v~l~~~~~g~G~~i~g~~~~---~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~   93 (129)
T 2kpk_A           17 GKFIHTKLRKSSRGFGFTVVGGDEP---DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPI   93 (129)
T ss_dssp             SEEEEEEEEECSSCCSEEEEEEEET---TEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCT
T ss_pred             CcEEEEEEEECCCcccEEEeCccCC---CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            5567889999889999999875422   135899999999999999999999999999999999999999999999876 


Q ss_pred             CCceeEEEEeccccC
Q psy6405         205 DGTIQDIKALGYDLN  219 (548)
Q Consensus       205 g~~V~LlV~RilDLr  219 (548)
                      +..+.+.+.|...+.
T Consensus        94 g~~v~l~v~R~~~~~  108 (129)
T 2kpk_A           94 GASVDLELCRGYPLP  108 (129)
T ss_dssp             TEEEEEEEEECSCCS
T ss_pred             CCeEEEEEEeCCCCC
Confidence            678999999876543

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.06  E-value=6.1e-10  Score=92.33  Aligned_cols=85  Identities=25%  Similarity=0.509  Sum_probs=73.1

Q ss_pred             CeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC-CC
Q psy6405         128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN-DG  206 (548)
Q Consensus       128 ~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~-g~  206 (548)
                      +.+|++.|...++||++.++....   .+++|..|.++|||+++|+|++||+|++|||.++.+.++.++..+++..+ +.
T Consensus         3 ~~~v~l~~~~~g~G~~~~~g~~~~---~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~   79 (90)
T 2q9v_A            3 EQDIFLWRKETGFGFRILGGNEPG---EPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQG   79 (90)
T ss_dssp             EEEEEEECBTTBCCEEEEECSSTT---SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHT
T ss_pred             cEEEEEEECCCccCEEEEccccCC---CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence            467889999999999998765432   36999999999999999999999999999999999999999999998874 34


Q ss_pred             ceeEEEEec
Q psy6405         207 TIQDIKALG  215 (548)
Q Consensus       207 ~V~LlV~Ri  215 (548)
                      .+.+.+.|.
T Consensus        80 ~v~l~v~R~   88 (90)
T 2q9v_A           80 HVNLTVRQT   88 (90)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEEEec
Confidence            788888763

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.06  E-value=5.9e-10  Score=98.34  Aligned_cols=91  Identities=32%  Similarity=0.404  Sum_probs=72.7

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCC---CCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSD---YESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-  124 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d---~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-  124 (548)
                      .+.++|.+.+. +..+|||++.++..   ....+++|..|.++|||+++|+|++||+|++|||+++.+++..+++..++ 
T Consensus        14 ~~~~~v~l~k~-~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~   92 (122)
T 1v5q_A           14 TETTEVVLTAD-PVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRD   92 (122)
T ss_dssp             EEEEEEEECCC-SSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHH
T ss_pred             ceeEEEEEEeC-CCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            46788888887 47899999997631   12357899999999999999999999999999999999866666543332 


Q ss_pred             --CCCCeEEEEEecCcce
Q psy6405         125 --RGPPVEITLIKDGAGL  140 (548)
Q Consensus       125 --~g~~VtVtV~RdGkgL  140 (548)
                        ++..+.|+|.|++...
T Consensus        93 ~~~g~~v~l~v~R~~~~~  110 (122)
T 1v5q_A           93 SSITSKVTLEIEFDVAES  110 (122)
T ss_dssp             HTTTTCEEEEEEEECCCS
T ss_pred             CCCCCeEEEEEEECCccc
Confidence              3778999999977643

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.05  E-value=1.3e-09  Score=91.70  Aligned_cols=89  Identities=27%  Similarity=0.459  Sum_probs=76.5

Q ss_pred             CCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      |.++.|++.|...++||++..+.....  .+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++.. +
T Consensus         3 g~~~~v~l~~~~~~lG~~l~~~~~~~~--~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~   79 (98)
T 2opg_A            3 GCETTIEISKGRTGLGLSIVGGSDTLL--GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQT-P   79 (98)
T ss_dssp             CEEEEEEEECBTTBTCEEEEECTTSTT--CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-C
T ss_pred             CCEEEEEEEECCCcccEEEecCCCCCC--CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-C
Confidence            567889999999999999987764321  3699999999999999999999999999999999999999999999876 4


Q ss_pred             CceeEEEEeccc
Q psy6405         206 GTIQDIKALGYD  217 (548)
Q Consensus       206 ~~V~LlV~RilD  217 (548)
                      ..+.+.+.|...
T Consensus        80 ~~v~l~v~R~~~   91 (98)
T 2opg_A           80 QRVRLTLYRDEA   91 (98)
T ss_dssp             SEEEEEEEECSS
T ss_pred             CeEEEEEEcCCC
Confidence            788888887543

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=99.05  E-value=4.9e-10  Score=106.16  Aligned_cols=88  Identities=30%  Similarity=0.499  Sum_probs=76.4

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGP  127 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~  127 (548)
                      ...++.|.+.+.. ..+|||++.++.+. ..+++|..|.++|||+++| |++||+|++|||.+|.++++.+++..++.+.
T Consensus        82 ~~~~~~v~l~k~~-~~~lG~~i~~~~~~-~~~~~V~~V~~gspA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~  158 (192)
T 3k1r_A           82 SRKLKEVRLDRLH-PEGLGLSVRGGLEF-GCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRTEK  158 (192)
T ss_dssp             CSSCEEEEEETTS-TTCCCEEEEEEGGG-TEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHTSSS
T ss_pred             CCceEEEEEEeCC-CCceeEEEEccccc-CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHcCCC
Confidence            3567899999884 67999999987543 3589999999999999999 9999999999999999988888887777788


Q ss_pred             CeEEEEEecCc
Q psy6405         128 PVEITLIKDGA  138 (548)
Q Consensus       128 ~VtVtV~RdGk  138 (548)
                      .+.++|.|.+.
T Consensus       159 ~v~l~v~r~g~  169 (192)
T 3k1r_A          159 TVSIKVRHIGL  169 (192)
T ss_dssp             EEEEEEEECCE
T ss_pred             eEEEEEEECCc
Confidence            89999999765

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.05  E-value=2.1e-10  Score=93.89  Aligned_cols=79  Identities=27%  Similarity=0.457  Sum_probs=66.5

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCC
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPP  128 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~  128 (548)
                      .+++|.+.|.  ..+|||++.++     .+++|..|.++|||+++| |++||+|++|||+++.++++.+++..+. .+..
T Consensus         2 ~~r~v~l~~~--~~g~G~~~~~~-----~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   73 (83)
T 2kv8_A            2 RVRSVEVARG--RAGYGFTLSGQ-----APCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCSGV   73 (83)
T ss_dssp             CEEEEEECCC--SSCCSCBCCCS-----SSCBCCBCCTTSTTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCSSC
T ss_pred             CcEEEEEEeC--CCcccEEEEcC-----CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            4688999988  48899988753     368999999999999999 9999999999999999998777765554 3466


Q ss_pred             eEEEEEec
Q psy6405         129 VEITLIKD  136 (548)
Q Consensus       129 VtVtV~Rd  136 (548)
                      +.++|.|+
T Consensus        74 v~l~v~R~   81 (83)
T 2kv8_A           74 LHMVIAEG   81 (83)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEcC
Confidence            88888875

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.05  E-value=8.3e-10  Score=96.13  Aligned_cols=85  Identities=22%  Similarity=0.468  Sum_probs=70.2

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCC-CCCCEEEEECCeeccCccHHHHHHHhh-C
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRL-QKGDRILSINGKSMKGLTHKESLAILK-R  125 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrL-q~GDrILaINGv~V~~~s~~~aV~~lk-~  125 (548)
                      ..++++|.+.|. ...+|||++...    ..+++|..|.++|||+++| | ++||+|++|||++|.++++.+++..++ .
T Consensus        23 ~~~~~~v~l~k~-~~~~lG~~i~~~----~~gv~V~~V~~~spA~~aG-ll~~GD~I~~vng~~v~~~~~~~~~~~l~~~   96 (113)
T 1va8_A           23 GETVKIVRIEKA-RDIPLGATVRNE----MDSVIISRIVKGGAAEKSG-LLHEGDEVLEINGIEIRGKDVNEVFDLLSDM   96 (113)
T ss_dssp             TEECEEEEEEEC-TTCCCCEEEEEC----SSSEEEEEECTTSHHHHHT-CCCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             CCceEEEEEEeC-CCCceeEEEEeC----CCCEEEEEeCCCCHHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            346788999998 355999999865    3589999999999999999 7 999999999999999988877765553 3


Q ss_pred             CCCeEEEEEecCc
Q psy6405         126 GPPVEITLIKDGA  138 (548)
Q Consensus       126 g~~VtVtV~RdGk  138 (548)
                      +..+.++|.|.+.
T Consensus        97 ~~~v~l~v~r~~~  109 (113)
T 1va8_A           97 HGTLTFVLIPSSG  109 (113)
T ss_dssp             CEEEEEEEECCCC
T ss_pred             CCeEEEEEEECCc
Confidence            4568888887664

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.04  E-value=1.7e-09  Score=90.14  Aligned_cols=88  Identities=34%  Similarity=0.555  Sum_probs=74.2

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCC--CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSP--FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~--lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      ....|++.|...++||++.++...+  .+..+++|..|.++|||+++|+|++||+|++|||.++.++++.++..+++.. 
T Consensus         3 ~~~~v~l~k~~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-   81 (94)
T 2fe5_A            3 TIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT-   81 (94)
T ss_dssp             CEEEEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC-
T ss_pred             EEEEEEEEECCCCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            3467888998899999999865432  1234799999999999999999999999999999999999999999999876 


Q ss_pred             CCceeEEEEec
Q psy6405         205 DGTIQDIKALG  215 (548)
Q Consensus       205 g~~V~LlV~Ri  215 (548)
                      +..+.+.+.|.
T Consensus        82 ~~~v~l~v~R~   92 (94)
T 2fe5_A           82 SDMVYLKVAKP   92 (94)
T ss_dssp             CSEEEEEEECC
T ss_pred             CCeEEEEEEcC
Confidence            45788888764

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.04  E-value=7.3e-10  Score=98.25  Aligned_cols=93  Identities=28%  Similarity=0.428  Sum_probs=78.0

Q ss_pred             hCCCCeEEEEEecC-cceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcC-CCCHHHHHHHHH
Q psy6405         124 KRGPPVEITLIKDG-AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVT-EMSRIEAWSLLK  201 (548)
Q Consensus       124 k~g~~VtVtV~RdG-kgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~-~~t~~EavelLr  201 (548)
                      ..+....|++.|.. .++||+|.++.....+..+++|..|.++|||+++|+|++||+|++|||+++. ++++.+++.+++
T Consensus        22 ~~~~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~  101 (128)
T 2db5_A           22 QGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQ  101 (128)
T ss_dssp             TTCEEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHH
T ss_pred             ccCceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHH
Confidence            34566778888875 6899999876544333347999999999999999999999999999999997 999999999999


Q ss_pred             HcCCCceeEEEEeccc
Q psy6405         202 KLNDGTIQDIKALGYD  217 (548)
Q Consensus       202 s~~g~~V~LlV~RilD  217 (548)
                      .. +..+.+++.|...
T Consensus       102 ~~-~~~v~l~v~r~~~  116 (128)
T 2db5_A          102 QT-TGSLRLIVAREPV  116 (128)
T ss_dssp             HC-CSEEEEEEEECCC
T ss_pred             cC-CCeEEEEEEcCCC
Confidence            85 6789999988743

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.04  E-value=1.8e-09  Score=90.34  Aligned_cols=84  Identities=25%  Similarity=0.434  Sum_probs=72.3

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      ....+++.|.+.++||++......    .+++|..|.++|||+++|+|++||+|++|||.++.++++.++++++++..+ 
T Consensus         4 ~~r~v~l~k~~~~lG~~i~~~~~~----~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-   78 (93)
T 3o46_A            4 SVKIIRLVKNREPLGATIKKDEQT----GAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQG-   78 (93)
T ss_dssp             CCEEEEEEESSSCCCEEEEECTTT----CCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCE-
T ss_pred             cEEEEEEEeCCCCccEEEEecCCC----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC-
Confidence            346788889999999999876221    369999999999999999999999999999999999999999999998754 


Q ss_pred             ceeEEEEec
Q psy6405         207 TIQDIKALG  215 (548)
Q Consensus       207 ~V~LlV~Ri  215 (548)
                      .+.+.+.+.
T Consensus        79 ~v~l~v~~~   87 (93)
T 3o46_A           79 AITFKIIPG   87 (93)
T ss_dssp             EEEEEEECC
T ss_pred             eEEEEEEeC
Confidence            778777664

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.04  E-value=1.1e-09  Score=94.79  Aligned_cols=91  Identities=23%  Similarity=0.390  Sum_probs=76.5

Q ss_pred             CeEEEEEecCcceeEEEec---CCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         128 PVEITLIKDGAGLGFSLEG---GKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       128 ~VtVtV~RdGkgLGfSItg---g~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      .+.|++.|...++||++.+   +........+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++.. 
T Consensus         5 ~~~v~l~k~~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-   83 (113)
T 2g5m_B            5 LFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNT-   83 (113)
T ss_dssp             EEEEECCCCSSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHS-
T ss_pred             EEEEEEEeCCCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-
Confidence            3567777888999999987   433222334799999999999999999999999999999999999999999999987 


Q ss_pred             CCceeEEEEeccccC
Q psy6405         205 DGTIQDIKALGYDLN  219 (548)
Q Consensus       205 g~~V~LlV~RilDLr  219 (548)
                      +..+.+.+.|.....
T Consensus        84 g~~v~l~v~R~~~~~   98 (113)
T 2g5m_B           84 KGRVRFMIGRERPGE   98 (113)
T ss_dssp             CSSCEEEEEECCCCT
T ss_pred             CCeEEEEEEeCCCCC
Confidence            788999999876543

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.04  E-value=1.4e-09  Score=93.33  Aligned_cols=89  Identities=24%  Similarity=0.450  Sum_probs=75.5

Q ss_pred             CeEEEEEecCcceeEEEec---CCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         128 PVEITLIKDGAGLGFSLEG---GKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       128 ~VtVtV~RdGkgLGfSItg---g~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      .+.|++.|...++||+|.+   +........+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++.. 
T Consensus        10 ~~~v~l~k~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-   88 (107)
T 1wf8_A           10 LFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNT-   88 (107)
T ss_dssp             EEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHC-
T ss_pred             EEEEEEEECCCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-
Confidence            3667788888999999988   333322334799999999999999999999999999999999999999999999886 


Q ss_pred             CCceeEEEEeccc
Q psy6405         205 DGTIQDIKALGYD  217 (548)
Q Consensus       205 g~~V~LlV~RilD  217 (548)
                      +..+.+++.|...
T Consensus        89 ~~~v~l~v~R~~~  101 (107)
T 1wf8_A           89 KGNVRFVIGREKP  101 (107)
T ss_dssp             CSEEEEEEEEECC
T ss_pred             CCeEEEEEEeCCC
Confidence            7789999988643

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.04  E-value=7.3e-10  Score=94.24  Aligned_cols=83  Identities=31%  Similarity=0.481  Sum_probs=64.7

Q ss_pred             EEEEeeCC--CCCceEEEEEeCCCC-----------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHH
Q psy6405          53 VVVLHRDL--PGNSVGITLAGGSDY-----------ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES  119 (548)
Q Consensus        53 tV~L~Kd~--~~~GLGfsIagG~d~-----------~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~a  119 (548)
                      .+.+.+..  ...+|||++.++.+.           ...+++|..|.++|||+++| |++||+|++|||+++.++++.++
T Consensus         7 ~i~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~   85 (104)
T 3sfj_A            7 RVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQA   85 (104)
T ss_dssp             EEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHH
T ss_pred             EEEEEEccCCCCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHH
Confidence            44444432  234799999977653           24679999999999999999 99999999999999999887776


Q ss_pred             HHHhh--CCCCeEEEEEec
Q psy6405         120 LAILK--RGPPVEITLIKD  136 (548)
Q Consensus       120 V~~lk--~g~~VtVtV~Rd  136 (548)
                      +..+.  .+..+.++|.|.
T Consensus        86 ~~~l~~~~g~~v~l~v~R~  104 (104)
T 3sfj_A           86 RKRLTKRSEEVVRLLVTRQ  104 (104)
T ss_dssp             HHHHTCTTCSEEEEEEEEC
T ss_pred             HHHHHhCCCCEEEEEEEcC
Confidence            65554  456788888773

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.04  E-value=9.5e-10  Score=92.20  Aligned_cols=76  Identities=24%  Similarity=0.349  Sum_probs=66.1

Q ss_pred             CCeEEEEEecCc-ceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         127 PPVEITLIKDGA-GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       127 ~~VtVtV~RdGk-gLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      .+..|++.|+.. ++||++..+          .|.+|.++|||+++| |++||+|++|||+++.+++|++++++|+. .+
T Consensus         4 ~~r~v~l~k~~~g~~Gf~i~~g----------~I~~v~~gspA~~aG-l~~GD~Il~VNG~~v~~~~~~evv~llr~-~g   71 (82)
T 1r6j_A            4 DPRTITMHKDSTGHVGFIFKNG----------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILST-SG   71 (82)
T ss_dssp             CCEEEEEECCTTSCCCEEEETT----------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHH-SC
T ss_pred             ceEEEEEEECCCCCeEEEEECC----------EEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHhc-CC
Confidence            567899998764 599999754          378999999999999 99999999999999999999999999995 47


Q ss_pred             CceeEEEEe
Q psy6405         206 GTIQDIKAL  214 (548)
Q Consensus       206 ~~V~LlV~R  214 (548)
                      .++++++..
T Consensus        72 ~~V~L~v~p   80 (82)
T 1r6j_A           72 TVVTITIMP   80 (82)
T ss_dssp             SEEEEEEEE
T ss_pred             CEEEEEEEe
Confidence            788887753

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.04  E-value=5.8e-10  Score=98.59  Aligned_cols=95  Identities=22%  Similarity=0.400  Sum_probs=78.2

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCC-CCCCEEEEECCeeccCccHHHHHHHhh--
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRL-QKGDRILSINGKSMKGLTHKESLAILK--  124 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrL-q~GDrILaINGv~V~~~s~~~aV~~lk--  124 (548)
                      ..+++.+.+.+. .+.+|||++.+..+  ..+++|..|.++|||+++| | ++||+|++|||+++.+++..++...+.  
T Consensus         6 ~~~~~~v~l~~~-~~~glG~~~~~~~~--~~~~~V~~V~~~spA~~aG-ll~~GD~I~~ing~~v~~~~~~~~~~~l~~~   81 (127)
T 1b8q_A            6 EPNVISVRLFKR-KVGGLGFLVKERVS--KPPVIISDLIRGGAAEQSG-LIQAGDIILAVNDRPLVDLSYDSALEVLRGI   81 (127)
T ss_dssp             CCCSEEEEEECT-TTSCCSCCEEECTT--SSCEEECCCSSSSSHHHHS-SCCTTTCCCEETTEECSSSCHHHHHHHHHSC
T ss_pred             CCceEEEEEEeC-CCCcEeEEEEecCC--CCCEEEEEeCCCCHHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            456788999887 36899999987643  3589999999999999999 7 999999999999999976666554443  


Q ss_pred             CCCCeEEEEEecCcceeEEEec
Q psy6405         125 RGPPVEITLIKDGAGLGFSLEG  146 (548)
Q Consensus       125 ~g~~VtVtV~RdGkgLGfSItg  146 (548)
                      .+..+.++|.|++..+.+++..
T Consensus        82 ~g~~v~l~v~R~g~~~~~~~~~  103 (127)
T 1b8q_A           82 ASETHVVLILRGPEGFTTHLET  103 (127)
T ss_dssp             CSSCEEEEEECCCCSEEECCCC
T ss_pred             CCCeEEEEEEeCCceEEEEEEE
Confidence            4678999999998887777764

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.04  E-value=1e-09  Score=94.90  Aligned_cols=90  Identities=26%  Similarity=0.397  Sum_probs=75.0

Q ss_pred             CCeEEEEEe-cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc--
Q psy6405         127 PPVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL--  203 (548)
Q Consensus       127 ~~VtVtV~R-dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~--  203 (548)
                      ..++|++.| ...++||++.++.... +..+++|.+|.++|||+++|+|++||+|++|||+++.++++.+++++|+..  
T Consensus         5 ~~~~v~l~k~~~~~lG~~i~g~~~~~-~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~   83 (108)
T 3cbz_A            5 NIITVTLNMEKYNFLGISIVGQSNER-GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVH   83 (108)
T ss_dssp             CEEEEEECHHHHCCCCEEEEEECSST-TCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHT
T ss_pred             eEEEEEEEeCCCCccCEEEEcCcCCC-CCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccc
Confidence            456777876 4578999998764321 234799999999999999999999999999999999999999999999987  


Q ss_pred             CCCceeEEEEeccc
Q psy6405         204 NDGTIQDIKALGYD  217 (548)
Q Consensus       204 ~g~~V~LlV~RilD  217 (548)
                      +...+.+++.|..+
T Consensus        84 ~~~~v~l~v~R~~~   97 (108)
T 3cbz_A           84 KPGPIVLTVAKSGG   97 (108)
T ss_dssp             SSSCEEEEEECCCC
T ss_pred             CCCeEEEEEEeCCC
Confidence            45579999988644

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.03  E-value=3.5e-09  Score=91.18  Aligned_cols=91  Identities=33%  Similarity=0.480  Sum_probs=76.9

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-ND  205 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g  205 (548)
                      ..+.+++.+...++||++........+..+++|..|.++|||+++|+|++||+|++|||+++.++++.++.++++.. .+
T Consensus        11 ~~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g   90 (111)
T 2koj_A           11 KRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKME   90 (111)
T ss_dssp             EEEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCS
T ss_pred             cEEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            44677788888899999987654322335799999999999999998999999999999999999999999999986 36


Q ss_pred             CceeEEEEeccc
Q psy6405         206 GTIQDIKALGYD  217 (548)
Q Consensus       206 ~~V~LlV~RilD  217 (548)
                      ..+.+.+.|...
T Consensus        91 ~~v~l~v~R~~~  102 (111)
T 2koj_A           91 GTVSLLVFRQEE  102 (111)
T ss_dssp             SEEEEEEEECCC
T ss_pred             CeEEEEEEeCCC
Confidence            788999988654

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.03  E-value=1.3e-09  Score=93.30  Aligned_cols=90  Identities=24%  Similarity=0.398  Sum_probs=74.8

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      ..+.|++ |...++||+|.++........+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++.. +.
T Consensus        11 ~~~~v~l-~~~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~   88 (106)
T 3axa_A           11 EIITVTL-KKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRT-SS   88 (106)
T ss_dssp             CEEEEEE-ECSSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CS
T ss_pred             eEEEEEE-CCCCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CC
Confidence            4466777 888899999986543222234799999999999999999999999999999999999999999999875 77


Q ss_pred             ceeEEEEecccc
Q psy6405         207 TIQDIKALGYDL  218 (548)
Q Consensus       207 ~V~LlV~RilDL  218 (548)
                      .+.+.+.|....
T Consensus        89 ~v~l~v~R~~~~  100 (106)
T 3axa_A           89 VVTLEVAKQGAI  100 (106)
T ss_dssp             EEEEEEECCCSS
T ss_pred             eEEEEEEeCCcc
Confidence            899999886543

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.03  E-value=1.1e-09  Score=95.10  Aligned_cols=86  Identities=27%  Similarity=0.410  Sum_probs=73.0

Q ss_pred             eEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC---C
Q psy6405         129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN---D  205 (548)
Q Consensus       129 VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~---g  205 (548)
                      ..|++.|. .++||+|.++.....+ .+++|..|.++|||+++|+|++||+|++|||+++.++++.+++++|+...   +
T Consensus        17 ~~v~l~k~-~glG~~i~gg~~~~~~-~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~   94 (109)
T 1wi4_A           17 RVITVTKE-TGLGLKILGGINRNEG-PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSE   94 (109)
T ss_dssp             EEEEECCS-SCCCEEEEECSSSSSC-SSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSS
T ss_pred             EEEEEeCC-CccCEEEEeccCCCCC-CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCC
Confidence            56667664 8999999987643211 26999999999999999999999999999999999999999999999987   6


Q ss_pred             CceeEEEEecc
Q psy6405         206 GTIQDIKALGY  216 (548)
Q Consensus       206 ~~V~LlV~Ril  216 (548)
                      ..+++.+.|..
T Consensus        95 ~~~~l~v~R~~  105 (109)
T 1wi4_A           95 SPWEIAFIRSG  105 (109)
T ss_dssp             SCEEEEEECCC
T ss_pred             ceEEEEEEeCC
Confidence            78888887753

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.02  E-value=2e-09  Score=91.39  Aligned_cols=87  Identities=30%  Similarity=0.491  Sum_probs=75.3

Q ss_pred             CCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       125 ~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      +..+..|++.|.+.++||++..+...    .+++|..|.++|||+++|+|++||+|++|||.++.++++.+++..++.. 
T Consensus         9 ~~~~~~v~l~k~~~glG~~~~~~~~~----~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-   83 (104)
T 3i4w_A            9 PREPRRIVIHRGSTGLGFNIVGGEXG----EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA-   83 (104)
T ss_dssp             CSSCEEEEEECBTTBTSEEEEECC-C----CCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTS-
T ss_pred             CCccEEEEEEeCCCccCEEEECCCCC----CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            34567899999989999999887543    3699999999999999999999999999999999999999999888875 


Q ss_pred             CCceeEEEEecc
Q psy6405         205 DGTIQDIKALGY  216 (548)
Q Consensus       205 g~~V~LlV~Ril  216 (548)
                      +..+.+++.|..
T Consensus        84 ~~~v~l~v~r~~   95 (104)
T 3i4w_A           84 GQTVTIIAQYKP   95 (104)
T ss_dssp             CSEEEEEEEECH
T ss_pred             CCeEEEEEEECc
Confidence            678888888753

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.02  E-value=9e-10  Score=94.12  Aligned_cols=85  Identities=22%  Similarity=0.510  Sum_probs=74.2

Q ss_pred             eEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC-CCc
Q psy6405         129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN-DGT  207 (548)
Q Consensus       129 VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~-g~~  207 (548)
                      +.+++.|...++||++..+....   .+++|..|.++|||+++|+|++||+|++|||+++.++++.+++++++..+ +..
T Consensus        11 ~~v~l~~~~~g~G~~i~~g~~~~---~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~   87 (103)
T 1uep_A           11 LDVHLRRMESGFGFRILGGDEPG---QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQ   87 (103)
T ss_dssp             ECCEEESSSSSCCEEECCCCSTT---SCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTE
T ss_pred             EEEEEEeCCCccCEEEeeecCCC---CCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCc
Confidence            56778888889999998765321   36899999999999999999999999999999999999999999998875 678


Q ss_pred             eeEEEEecc
Q psy6405         208 IQDIKALGY  216 (548)
Q Consensus       208 V~LlV~Ril  216 (548)
                      +.+++.|..
T Consensus        88 v~l~v~R~~   96 (103)
T 1uep_A           88 VNLTVRRKV   96 (103)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEeCC
Confidence            999998864

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.02  E-value=1e-09  Score=94.59  Aligned_cols=86  Identities=26%  Similarity=0.338  Sum_probs=72.7

Q ss_pred             CeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc----
Q psy6405         128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL----  203 (548)
Q Consensus       128 ~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~----  203 (548)
                      ...|.+.|.+.++||+|.++.....  ..++|..|.+++||+++|+|++||+|++|||+++.++++.+++++|+..    
T Consensus         7 ~~~v~l~k~~~glG~~i~gg~~~~~--~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~   84 (103)
T 1ufx_A            7 GTLVRVKKSAATLGIAIEGGANTRQ--PLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTK   84 (103)
T ss_dssp             SEEEEEECCSSSCCEEEECBTTSSC--SSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCS
T ss_pred             eEEEEEEcCCCcCCeEEECCCCCCC--CcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccC
Confidence            4677888888999999998765421  1249999999999999999999999999999999999999999999986    


Q ss_pred             CCCceeEEEEec
Q psy6405         204 NDGTIQDIKALG  215 (548)
Q Consensus       204 ~g~~V~LlV~Ri  215 (548)
                      .+..+.+++.|.
T Consensus        85 ~~~~i~l~v~r~   96 (103)
T 1ufx_A           85 DRDYIDFLVTEF   96 (103)
T ss_dssp             SCSEEEEEECCC
T ss_pred             CCCeEEEEEEEc
Confidence            566777777664

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.02  E-value=1.6e-09  Score=96.34  Aligned_cols=90  Identities=27%  Similarity=0.569  Sum_probs=70.8

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCC--------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHH
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYE--------SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES  119 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~--------~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~a  119 (548)
                      ..+++++.+.+. +..+|||++.++.+..        ..+++|..|.++|||+++|+|++||+|++|||+++.+++..++
T Consensus        22 ~~~p~~v~l~k~-~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~  100 (123)
T 2iwq_A           22 SMQPRRVELWRE-PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQA  100 (123)
T ss_dssp             -CCCEEEEECCC-TTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHH
T ss_pred             cCCCEEEEEEec-CCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence            345688999887 4689999998764321        2479999999999999999999999999999999999877776


Q ss_pred             HHHhh-CCCCeEEEEEecCc
Q psy6405         120 LAILK-RGPPVEITLIKDGA  138 (548)
Q Consensus       120 V~~lk-~g~~VtVtV~RdGk  138 (548)
                      +..++ .+..+.++|.|.+.
T Consensus       101 ~~~l~~~~~~v~l~v~r~~~  120 (123)
T 2iwq_A          101 VEAIRKAGNPVVFMVQSIIS  120 (123)
T ss_dssp             HHHHHHCCSSEEEEEECCCC
T ss_pred             HHHHHcCCCeEEEEEEECCc
Confidence            55443 35588888887543

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.01  E-value=2.3e-09  Score=92.51  Aligned_cols=86  Identities=34%  Similarity=0.567  Sum_probs=74.8

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      ....|++.|.+.++||++..+...     +++|..|.++|||+++|+|+.||+|++|||+++.++++.+++++++.. +.
T Consensus        15 ~~~~v~l~~~~~~lG~~l~~~~~~-----g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-g~   88 (111)
T 2dlu_A           15 HVEEVELINDGSGLGFGIVGGKTS-----GVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNC-GN   88 (111)
T ss_dssp             EEEEEEEECCSSCCCEEEECCSSS-----SBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHH-CS
T ss_pred             ceEEEEEEeCCCccCEEEeccCCC-----CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CC
Confidence            346788889889999999876533     699999999999999999999999999999999999999999999886 67


Q ss_pred             ceeEEEEecccc
Q psy6405         207 TIQDIKALGYDL  218 (548)
Q Consensus       207 ~V~LlV~RilDL  218 (548)
                      .+.+++.|....
T Consensus        89 ~v~l~v~R~~~~  100 (111)
T 2dlu_A           89 SVRMLVARDPAG  100 (111)
T ss_dssp             EEEEEEEESCTT
T ss_pred             eEEEEEEeCCCC
Confidence            889999886543

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=99.01  E-value=7.7e-10  Score=94.24  Aligned_cols=84  Identities=27%  Similarity=0.481  Sum_probs=68.5

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCC-------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHH
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDY-------ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA  121 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~-------~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~  121 (548)
                      .+..++.+.+.   .+|||++.++.+.       ...+++|..|.++|||++ | |++||+|++|||.++.++++.+++.
T Consensus        10 ~~~~~v~l~~~---~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~   84 (103)
T 1n7t_A           10 KQEIRVRVEKD---PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVS   84 (103)
T ss_dssp             CCCEEEEEECS---SCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-S-CCTTCEEEEETTEECSSCCHHHHHH
T ss_pred             cEEEEEEEccC---CCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-C-CCCCCEEEEECCEECCCCCHHHHHH
Confidence            44567778776   4899999987542       346899999999999999 9 9999999999999999998887665


Q ss_pred             Hhh-CCCCeEEEEEecC
Q psy6405         122 ILK-RGPPVEITLIKDG  137 (548)
Q Consensus       122 ~lk-~g~~VtVtV~RdG  137 (548)
                      .+. .+..+.++|.|+.
T Consensus        85 ~~~~~g~~v~l~v~R~~  101 (103)
T 1n7t_A           85 LLKTFQNTVELIIVREV  101 (103)
T ss_dssp             HHHHCCSEEEEEEECCC
T ss_pred             HhhcCCCeEEEEEEecC
Confidence            544 5777889988853

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=2.7e-09  Score=88.74  Aligned_cols=86  Identities=34%  Similarity=0.636  Sum_probs=73.1

Q ss_pred             CCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      ..+.+|++.|...++||++..+....   .+++|..|.++|||+++|.|++||+|++|||+++.++++.++.++++.. +
T Consensus         4 ~~~r~v~l~k~~~glG~~l~~~~~~~---~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~   79 (93)
T 2dkr_A            4 GSSGVVELPKTDEGLGFNIMGGKEQN---SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAA-Q   79 (93)
T ss_dssp             SCSCEEEEECCTTCCCEEEECSSSSS---CCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHC-C
T ss_pred             CCCEEEEEEeCCCCccEEEecccCCC---CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-C
Confidence            45678999999999999998764321   3699999999999999955999999999999999999999999999886 4


Q ss_pred             CceeEEEEec
Q psy6405         206 GTIQDIKALG  215 (548)
Q Consensus       206 ~~V~LlV~Ri  215 (548)
                      ..+.+++.|.
T Consensus        80 ~~v~l~v~r~   89 (93)
T 2dkr_A           80 GSVKLVVRSG   89 (93)
T ss_dssp             SEEEEEECCC
T ss_pred             CcEEEEEEeC
Confidence            5778887764

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.01  E-value=1.4e-09  Score=89.83  Aligned_cols=84  Identities=29%  Similarity=0.462  Sum_probs=71.0

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      ..+.|++ +.+.++||++.++....   .+++|..|.++|||+++| |++||+|++|||.++.++++.++.++++.. +.
T Consensus         3 ~~~~v~l-~~~~~~G~~l~~g~~~~---~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~   76 (88)
T 2uzc_A            3 SNYSVSL-VGPAPWGFRLQGGKDFN---MPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGC-TG   76 (88)
T ss_dssp             CEEEEEE-ESSSCCCEEEEEEGGGT---EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTC-CS
T ss_pred             cEEEEEE-cCCCcccEEEECcCCCC---CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC-CC
Confidence            3466777 66788999998755331   358999999999999999 999999999999999999999999999876 77


Q ss_pred             ceeEEEEecc
Q psy6405         207 TIQDIKALGY  216 (548)
Q Consensus       207 ~V~LlV~Ril  216 (548)
                      .+.+.+.|..
T Consensus        77 ~v~l~v~R~g   86 (88)
T 2uzc_A           77 SLNMTLQRES   86 (88)
T ss_dssp             EEEEEEECCC
T ss_pred             eEEEEEEeCC
Confidence            8888888754

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.00  E-value=1.9e-09  Score=91.97  Aligned_cols=88  Identities=25%  Similarity=0.431  Sum_probs=67.8

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCC-CCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh--
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSD-YESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK--  124 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d-~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk--  124 (548)
                      ..+++.+.+.+.. +.+|||++..... ....+++|..|.++|||+++|.|++||+|++|||+++.++++.+++..++  
T Consensus         7 ~~~~~~v~l~k~~-g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~   85 (101)
T 2yt7_A            7 GDNCREVHLEKRR-GEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRET   85 (101)
T ss_dssp             TCCCEEEEEECCT-TCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHT
T ss_pred             CCceEEEEEEeCC-CCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            4567889998873 6799999985221 11226999999999999994449999999999999997777777654443  


Q ss_pred             -CCCCeEEEEEec
Q psy6405         125 -RGPPVEITLIKD  136 (548)
Q Consensus       125 -~g~~VtVtV~Rd  136 (548)
                       .+..++++|.|.
T Consensus        86 ~~g~~v~l~v~R~   98 (101)
T 2yt7_A           86 KSQTSVTLSIVHC   98 (101)
T ss_dssp             TTSSEEEEEECCC
T ss_pred             CCCCeEEEEEEeC
Confidence             567788888774

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=1e-09  Score=92.22  Aligned_cols=83  Identities=20%  Similarity=0.411  Sum_probs=66.6

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      ...++.|.+.|. ...+|||++...    ..+++|..|.++|||+++|.|++||+|++|||+++ +.+..++...++ .+
T Consensus         4 ~~~~r~v~l~k~-~~~~lG~~i~~~----~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~   77 (91)
T 2e7k_A            4 GSSGRMVGIRKT-AGEHLGVTFRVE----GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNAS   77 (91)
T ss_dssp             CCCSCBCCBCCC-TTCCCCEEEEES----SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCC
T ss_pred             CCCcEEEEEEEC-CCCcEeEEEEec----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCC
Confidence            345677888876 478999999973    35899999999999999877999999999999999 666666654443 46


Q ss_pred             CCeEEEEEec
Q psy6405         127 PPVEITLIKD  136 (548)
Q Consensus       127 ~~VtVtV~Rd  136 (548)
                      ..+.++|.|.
T Consensus        78 ~~v~l~v~~~   87 (91)
T 2e7k_A           78 GSVILKILSG   87 (91)
T ss_dssp             SSBCEEEECC
T ss_pred             CeEEEEEEEC
Confidence            6788888764

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.00  E-value=1.7e-09  Score=90.38  Aligned_cols=85  Identities=22%  Similarity=0.313  Sum_probs=71.2

Q ss_pred             CCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       125 ~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      +..+..+++.|.+.++||++......    .+++|..|.++|||+++| |++||+|++|||.++.++++.++.++++.. 
T Consensus         3 p~~~r~v~l~~~~~~~G~~l~~~~~~----~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-   76 (95)
T 3r68_A            3 PHQPRVVVIKKGSNGYGFYLRAGPEQ----KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKG-   76 (95)
T ss_dssp             CCCCEEEEEECBTTBCSCEEEEC--C----CSEEEECCCTTSHHHHHT-CCTTEEEEEETTEECTTCCHHHHHHHHHTT-
T ss_pred             CCCcEEEEEecCCCcccEEEEecCCC----CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC-
Confidence            34567899999999999999876543    269999999999999999 999999999999999999999999999985 


Q ss_pred             CCceeEEEEec
Q psy6405         205 DGTIQDIKALG  215 (548)
Q Consensus       205 g~~V~LlV~Ri  215 (548)
                      +..+.+++.|.
T Consensus        77 ~~~~~~~~~r~   87 (95)
T 3r68_A           77 GDQTTLLVLDK   87 (95)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCeEEEEEECC
Confidence            55666665553

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.00  E-value=1.5e-09  Score=96.68  Aligned_cols=85  Identities=33%  Similarity=0.589  Sum_probs=67.7

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh---hC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL---KR  125 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l---k~  125 (548)
                      ..++.+.+.+   ..+|||++.++.+   .+++|..|.++|||+++| |++||+|++|||++|.++++.+++..+   ..
T Consensus        28 p~~~~~~~~~---~~~lG~~l~~~~~---~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~  100 (124)
T 3tsv_A           28 PSMKLVKFRK---GDSVGLRLAGGND---VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPK  100 (124)
T ss_dssp             CCCEEEEEEC---SSCCCEEEEECTT---SCEEEEEECTTCHHHHTT-CCTTEEEEEETTEECSSCCHHHHHHHHHHSCT
T ss_pred             CCeEEEEcCC---CCceeEEEecCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCC
Confidence            4445554444   4799999997654   589999999999999999 999999999999999999776654433   46


Q ss_pred             CCCeEEEEEecCcce
Q psy6405         126 GPPVEITLIKDGAGL  140 (548)
Q Consensus       126 g~~VtVtV~RdGkgL  140 (548)
                      +..+.|+|.|.+..+
T Consensus       101 g~~v~l~v~R~~~~~  115 (124)
T 3tsv_A          101 GEEVTILAQKKKDVY  115 (124)
T ss_dssp             TCEEEEEEEECHHHH
T ss_pred             CCEEEEEEEECCchh
Confidence            788999999876543

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.00  E-value=4e-09  Score=90.54  Aligned_cols=89  Identities=25%  Similarity=0.343  Sum_probs=74.6

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCC-----CCCCCeEEEEeccCChhhhc-CCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSP-----FGDQPLTVKKIFTGGCAEKN-GQLKAGDEILTINNVPVTEMSRIEAWSLL  200 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~-----lG~~gI~VssV~pgSpAeka-GrLq~GDrILaVNGvsV~~~t~~EavelL  200 (548)
                      .+++|++.|...++||+|.++....     ....+++|..|.++|||+++ | |++||+|++|||+++.++++.+++.++
T Consensus         8 ~~~~v~l~k~~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~agg-L~~GD~Il~vng~~v~~~~~~~~~~~~   86 (107)
T 1uhp_A            8 KSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGG-LQIHDRIIEVNGRDLSRATHDQAVEAF   86 (107)
T ss_dssp             EEEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTC-CCSSCEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEEEEEeCCCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCC-CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            3577888898899999998765321     12347999999999999999 6 999999999999999999999999999


Q ss_pred             HHcCCCceeEEEEeccc
Q psy6405         201 KKLNDGTIQDIKALGYD  217 (548)
Q Consensus       201 rs~~g~~V~LlV~RilD  217 (548)
                      +.. +..+.+++.|...
T Consensus        87 ~~~-~~~v~l~v~R~~~  102 (107)
T 1uhp_A           87 KTA-KEPIVVQVLRRTS  102 (107)
T ss_dssp             HHC-CSSEEEEEEECCS
T ss_pred             HcC-CCcEEEEEEeCCC
Confidence            986 6788888887543

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.00  E-value=6.5e-10  Score=92.67  Aligned_cols=84  Identities=21%  Similarity=0.254  Sum_probs=71.6

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      .+..|++.|...++||++......    .+++|..|.++|||+++| |++||+|++|||.++.++++.++.++++.. +.
T Consensus         3 ~pr~v~l~k~~~~~G~~l~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~   76 (91)
T 2vsp_A            3 KPKLCRLAKGENGYGFHLNAIRGL----PGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSS-GK   76 (91)
T ss_dssp             CEEEEEEECBTTBTSCCCBCCTTC----SCCBC-CCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHTTS-CS
T ss_pred             CcEEEEEEeCCCcccEEEEeccCC----CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CC
Confidence            467889999888999999765432    368999999999999999 999999999999999999999999999887 78


Q ss_pred             ceeEEEEecc
Q psy6405         207 TIQDIKALGY  216 (548)
Q Consensus       207 ~V~LlV~Ril  216 (548)
                      .+.+.+.|..
T Consensus        77 ~v~l~v~r~~   86 (91)
T 2vsp_A           77 NVTLLVCGKK   86 (91)
T ss_dssp             EEEEEEEC--
T ss_pred             EEEEEEEeCC
Confidence            8999888754

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.00  E-value=3.3e-09  Score=88.26  Aligned_cols=85  Identities=32%  Similarity=0.430  Sum_probs=72.8

Q ss_pred             CCeEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         127 PPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       127 ~~VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      ..++|++.|. +.++||++......    .+++|..|.++|||+++|+|++||+|++|||.++.+.++.++..+++.. +
T Consensus         4 ~~~~v~l~k~~~~~lG~~~~~~~~~----~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~   78 (92)
T 2qg1_A            4 DTLTIGLQKKPGKGLGLSIVGKRND----TGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCS-L   78 (92)
T ss_dssp             CEEEEEEECCTTSCCSEEEECCSSS----CSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHC-C
T ss_pred             eEEEEEEEeCCCCcccEEEEeccCC----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-C
Confidence            4578888874 58899999876532    3699999999999999999999999999999999999999999998875 6


Q ss_pred             CceeEEEEecc
Q psy6405         206 GTIQDIKALGY  216 (548)
Q Consensus       206 ~~V~LlV~Ril  216 (548)
                      ..+.+.+.|..
T Consensus        79 ~~v~l~v~R~~   89 (92)
T 2qg1_A           79 GTVTLEVGRIS   89 (92)
T ss_dssp             SEEEEEEECCC
T ss_pred             CeEEEEEEccc
Confidence            67888888754

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.00  E-value=3.3e-09  Score=93.61  Aligned_cols=90  Identities=34%  Similarity=0.519  Sum_probs=76.0

Q ss_pred             CCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC-
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN-  204 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~-  204 (548)
                      ...+.+++.+...++||++........+..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++++++..+ 
T Consensus        29 ~~~~~v~l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~  108 (121)
T 2kom_A           29 GKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKM  108 (121)
T ss_dssp             CEEEEEEEECCTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCS
T ss_pred             CeEEEEEEEcCCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCC
Confidence            3447777788888899999876543333457999999999999999999999999999999999999999999999863 


Q ss_pred             CCceeEEEEec
Q psy6405         205 DGTIQDIKALG  215 (548)
Q Consensus       205 g~~V~LlV~Ri  215 (548)
                      +..+.+.+.|.
T Consensus       109 g~~v~l~v~R~  119 (121)
T 2kom_A          109 EGTVSLLVFRQ  119 (121)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCEEEEEEEeC
Confidence            67888888875

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=8.7e-10  Score=93.86  Aligned_cols=87  Identities=24%  Similarity=0.402  Sum_probs=68.8

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhc-CCCCCCCEEEEECCeeccCccHHHHHHHhh-C
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRD-GRLQKGDRILSINGKSMKGLTHKESLAILK-R  125 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqA-GrLq~GDrILaINGv~V~~~s~~~aV~~lk-~  125 (548)
                      .++.+.+.+.... ..+|||++.++.+. ..+++|..|.++|||+++ | |++||+|++|||+++.++ +.+++..++ .
T Consensus         7 ~~~~~~~~v~~~~-~~~~G~~~~gg~~~-~~~v~V~~V~~~spA~~agG-L~~GD~I~~ing~~v~~~-~~~~~~~~~~~   82 (100)
T 2edp_A            7 GGSFQYVPVQLQG-GAPWGFTLKGGLEH-CEPLTVSKIEDGGKAALSQK-MRTGDELVNINGTPLYGS-RQEALILIKGS   82 (100)
T ss_dssp             CCCCEEEEEECCS-CSCCCCCEEEEGGG-TEEEEECCCCTTSHHHHHTS-CCTTCEEEEETTEECCSC-SHHHHHHHHTC
T ss_pred             CCCcEEEEEEECC-CCCcCEEEeccCCC-CCCeEEEEECCCCHHHHcCC-CCCCCEEEEECCEEccch-HHHHHHHHHhC
Confidence            4556666666653 46999999987653 246899999999999999 8 999999999999999987 555554444 4


Q ss_pred             CCCeEEEEEecCc
Q psy6405         126 GPPVEITLIKDGA  138 (548)
Q Consensus       126 g~~VtVtV~RdGk  138 (548)
                      +..+.++|.|++.
T Consensus        83 ~~~v~l~v~R~~~   95 (100)
T 2edp_A           83 FRILKLIVRRRNS   95 (100)
T ss_dssp             CSSCEEEEEECCC
T ss_pred             CCeEEEEEEeCCC
Confidence            6788999999765

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.00  E-value=4e-10  Score=94.66  Aligned_cols=83  Identities=25%  Similarity=0.455  Sum_probs=66.2

Q ss_pred             EEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-CCCeEEE
Q psy6405          54 VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEIT  132 (548)
Q Consensus        54 V~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-g~~VtVt  132 (548)
                      +.+.++. ..+|||++.++.+. ..+++|..|.++|||+++| |++||+|++|||+++.++++.++...+.. +..+.++
T Consensus         8 ~~~~~~~-~~~lG~~l~~g~~~-~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~   84 (94)
T 1vb7_A            8 LTVDVAG-PAPWGFRISGGRDF-HTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQ   84 (94)
T ss_dssp             EEEEECS-SSCCSBCCEEETTT-TEEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEE
T ss_pred             EEEEecC-CCCccEEEecccCC-CCCeEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEE
Confidence            3344442 57999999987653 3578999999999999999 99999999999999999977776655543 3778999


Q ss_pred             EEecCcc
Q psy6405         133 LIKDGAG  139 (548)
Q Consensus       133 V~RdGkg  139 (548)
                      |.|++..
T Consensus        85 v~R~g~~   91 (94)
T 1vb7_A           85 LDRSSGP   91 (94)
T ss_dssp             EECCCCC
T ss_pred             EEECCcC
Confidence            9997654

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.00  E-value=2.2e-09  Score=89.58  Aligned_cols=80  Identities=21%  Similarity=0.320  Sum_probs=68.6

Q ss_pred             eEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhh-cCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         129 VEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEK-NGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       129 VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAek-aGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      ..|.+.|. +.++|+++.....     .+++|.+|.++|||++ +| |++||+|++|||+++.++++.+++++++..++ 
T Consensus         3 r~V~l~K~~~~~lG~~i~~~~~-----~~~~I~~V~~gspA~~~ag-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~-   75 (88)
T 1kwa_A            3 RLVQFQKNTDEPMGITLKMNEL-----NHCIVARIMHGGMIHRQGT-LHVGDEIREINGISVANQTVEQLQKMLREMRG-   75 (88)
T ss_dssp             EEEEEEECSSSCCCEEEECSCG-----GGEEEEEECTTSHHHHHTC-CCTTCEEEEETTEEGGGSCHHHHHHHHHHCCE-
T ss_pred             EEEEEEeCCCCceeEEEEeCCC-----CCEEEEEECCCCHHHHcCC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCC-
Confidence            45778876 5889999987432     2599999999999999 66 99999999999999999999999999999865 


Q ss_pred             ceeEEEEec
Q psy6405         207 TIQDIKALG  215 (548)
Q Consensus       207 ~V~LlV~Ri  215 (548)
                      .+.+.+.|.
T Consensus        76 ~v~l~v~r~   84 (88)
T 1kwa_A           76 SITFKIVPS   84 (88)
T ss_dssp             EEEEEEECC
T ss_pred             cEEEEEECC
Confidence            788888764

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.00  E-value=1.1e-09  Score=93.73  Aligned_cols=90  Identities=38%  Similarity=0.498  Sum_probs=76.7

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCC---CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSP---FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~---lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      ..++|++.|...++||+|.++....   .+..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++..
T Consensus         7 ~~~~v~l~~~~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~   86 (105)
T 1wha_A            7 GRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA   86 (105)
T ss_dssp             EEEEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC
T ss_pred             eeEEEEEEeCCCccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3477888898899999999876521   1235799999999999999999999999999999999999999999999876


Q ss_pred             CCCceeEEEEeccc
Q psy6405         204 NDGTIQDIKALGYD  217 (548)
Q Consensus       204 ~g~~V~LlV~RilD  217 (548)
                       +..+.+++.|..+
T Consensus        87 -g~~v~l~v~R~~~   99 (105)
T 1wha_A           87 -SPTIALLLEREAG   99 (105)
T ss_dssp             -CSCEEEEEEECCC
T ss_pred             -CCeEEEEEEECCC
Confidence             6788999988643

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.00  E-value=3e-09  Score=89.27  Aligned_cols=89  Identities=21%  Similarity=0.221  Sum_probs=75.3

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      .+..|++.|...++||++....... +..+++|..|.++|||+++| |++||+|++|||.++.++++.++.++++.. +.
T Consensus         3 ~~r~v~l~k~~~~~G~~l~~~~~~~-~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~   79 (96)
T 2v90_A            3 KPRCLHLEKGPQGFGFLLREEKGLD-GRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQ-GS   79 (96)
T ss_dssp             CCEEEEEECBTTBSCEEEEEEECTT-SCEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHTT-TT
T ss_pred             CCEEEEEEeCCCcccEEEEeccCCC-CCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CC
Confidence            4678999999899999997632111 12369999999999999999 999999999999999999999999999986 78


Q ss_pred             ceeEEEEecccc
Q psy6405         207 TIQDIKALGYDL  218 (548)
Q Consensus       207 ~V~LlV~RilDL  218 (548)
                      .+.+.+.|....
T Consensus        80 ~v~l~v~r~~~~   91 (96)
T 2v90_A           80 CVSLTVVDPEAD   91 (96)
T ss_dssp             EEEEEEECCCTT
T ss_pred             EEEEEEECCCCc
Confidence            899999887543

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=98.99  E-value=6.1e-10  Score=98.28  Aligned_cols=94  Identities=16%  Similarity=0.289  Sum_probs=74.6

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh--C
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK--R  125 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk--~  125 (548)
                      ...++.+.+.+.  ..+|||++.++.+  ..+++|..|.++|||+++| |++||+|++|||+++.+++..++...+.  .
T Consensus         7 ~~~~r~v~l~~~--~~g~G~~l~~~~~--~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   81 (128)
T 2kjd_A            7 MLRPRLCTMKKG--PSGYGFNLHSDKS--KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG   81 (128)
T ss_dssp             TCCCEEEEEECC--SSSCCEEEEECSS--SCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTC
T ss_pred             CCCcEEEEEecC--CCcccEEEEecCC--CCCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            456788999987  5789999997654  3589999999999999999 9999999999999999976666554443  3


Q ss_pred             CCCeEEEEEecCccee--EEEec
Q psy6405         126 GPPVEITLIKDGAGLG--FSLEG  146 (548)
Q Consensus       126 g~~VtVtV~RdGkgLG--fSItg  146 (548)
                      +..+.++|.|++....  ++++.
T Consensus        82 ~~~~~l~v~R~g~~~~~~~~l~~  104 (128)
T 2kjd_A           82 DETKLLVVDRETDEFFKKCRVIP  104 (128)
T ss_dssp             SEEEEEEECHHHHHHHHHHTCCC
T ss_pred             CCEEEEEEEeCCcceEEEEEEEe
Confidence            5567788888876655  44443

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=98.99  E-value=2.3e-09  Score=93.22  Aligned_cols=89  Identities=29%  Similarity=0.433  Sum_probs=75.1

Q ss_pred             hCCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         124 KRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       124 k~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      .+.....|++.|.+.++||++.++....   .+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++..
T Consensus        21 ~~~~~~~v~l~~~~~glG~~l~~~~~~~---~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   97 (112)
T 2r4h_A           21 QSMDFYTVELERGAKGFGFSLRGGREYN---MDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNG   97 (112)
T ss_dssp             --CCEEEEEEECBTTBTSEEEEECGGGT---CCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTT
T ss_pred             CCCceEEEEEEcCCCccCEEEeccccCC---CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3466788999998889999998764321   3699999999999999999999999999999999999999999999874


Q ss_pred             CCCceeEEEEecc
Q psy6405         204 NDGTIQDIKALGY  216 (548)
Q Consensus       204 ~g~~V~LlV~Ril  216 (548)
                       +..+.+++.|..
T Consensus        98 -g~~v~l~v~R~~  109 (112)
T 2r4h_A           98 -GRRVRLFLKRGE  109 (112)
T ss_dssp             -TTEEEEEEECCE
T ss_pred             -CCeEEEEEEeCC
Confidence             678888887753

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=98.99  E-value=5.1e-09  Score=88.18  Aligned_cols=86  Identities=27%  Similarity=0.410  Sum_probs=72.8

Q ss_pred             CeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCc
Q psy6405         128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGT  207 (548)
Q Consensus       128 ~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~  207 (548)
                      .++|++.|.+.++||++.......   .+++|..|.++|||+++|+|++||+|++|||.++.++++.++.++++. .+..
T Consensus         6 ~~~v~l~~~~~~lG~~i~~~~~~~---~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~   81 (97)
T 1n7e_A            6 IYTVELKRYGGPLGITISGTEEPF---DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQM-AGET   81 (97)
T ss_dssp             EEEEEEECTTSCCCEEEECCSSTT---SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSE
T ss_pred             EEEEEEEeCCCCcCEEEEcccCCC---CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCe
Confidence            366777788778999998765321   369999999999999999999999999999999999999999999984 4778


Q ss_pred             eeEEEEeccc
Q psy6405         208 IQDIKALGYD  217 (548)
Q Consensus       208 V~LlV~RilD  217 (548)
                      +.+.+.|...
T Consensus        82 v~l~v~R~~~   91 (97)
T 1n7e_A           82 VTLKIKKQTD   91 (97)
T ss_dssp             EEEEEECCCC
T ss_pred             EEEEEEeCCC
Confidence            8898887654

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=98.98  E-value=4.6e-09  Score=87.99  Aligned_cols=85  Identities=21%  Similarity=0.281  Sum_probs=72.5

Q ss_pred             CeEEEEEec--CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         128 PVEITLIKD--GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       128 ~VtVtV~Rd--GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      .+.|++.|.  +.++||++.+....    .+++|..|.++|||+++|+|++||+|++|||.++.++++.++...++.. +
T Consensus         4 ~~~v~l~k~~~~~~lG~~~~~~~~~----~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g   78 (95)
T 2vwr_A            4 ILQVALHKRDSGEQLGIKLVRRTDE----PGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQAS-G   78 (95)
T ss_dssp             EEEEEEECSSTTCCCCEEEEECSSS----CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC-C
T ss_pred             EEEEEEEECCCCCcccEEEEeccCC----CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-C
Confidence            367888874  46799999876543    3699999999999999999999999999999999999999999999876 7


Q ss_pred             CceeEEEEeccc
Q psy6405         206 GTIQDIKALGYD  217 (548)
Q Consensus       206 ~~V~LlV~RilD  217 (548)
                      ..+.+.+.|...
T Consensus        79 ~~v~l~v~R~~~   90 (95)
T 2vwr_A           79 ERVNLTIARPGK   90 (95)
T ss_dssp             SEEEEEEEEESC
T ss_pred             CEEEEEEEcCCc
Confidence            788999988643

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.98  E-value=7.4e-10  Score=95.40  Aligned_cols=87  Identities=36%  Similarity=0.632  Sum_probs=73.0

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      ..+++.|.+.|.  ..+|||++.++.+  ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..+. .+
T Consensus        13 ~~~~~~v~l~k~--~~glG~~l~~~~~--~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~   88 (113)
T 1um7_A           13 AREPRKIILHKG--STGLGFNIVGGED--GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAG   88 (113)
T ss_dssp             CCSEEEEEEECC--SSCSSBCCBCCST--TCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCC
T ss_pred             CCceEEEEEEEC--CCcccEEEEeccC--CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            467899999987  5899999997654  358999999999999999999999999999999999998777665444 46


Q ss_pred             CCeEEEEEecCc
Q psy6405         127 PPVEITLIKDGA  138 (548)
Q Consensus       127 ~~VtVtV~RdGk  138 (548)
                      ..+.++|.|.+.
T Consensus        89 ~~v~l~v~r~~~  100 (113)
T 1um7_A           89 QSVTIVAQYRPE  100 (113)
T ss_dssp             SEEEEEEECCHH
T ss_pred             CcEEEEEEECcc
Confidence            678888887654

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=4.6e-10  Score=95.06  Aligned_cols=83  Identities=24%  Similarity=0.365  Sum_probs=69.9

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      ....++|.|.+.....+|||.+.+     ..+++|..|.++|||+ +| |++||+|++|||+++.++++.+++..++ .+
T Consensus         6 ~~~~~~v~l~~~~~~~~~G~~l~~-----~~~~~V~~V~~~spA~-ag-L~~GD~Il~ing~~v~~~~~~~~~~~~~~~g   78 (96)
T 2edv_A            6 SGVRHTVKIDKDTLLQDYGFHISE-----SLPLTVVAVTAGGSAH-GK-LFPGDQILQMNNEPAEDLSWERAVDILREAE   78 (96)
T ss_dssp             SCEEEEEEECCCSSSCSCSBCCCS-----SSSCBCCCBCSSSSST-TT-SCTTCBEEEESSCBSTTCCHHHHHHHHHHCS
T ss_pred             CCccEEEEEEECCCCCcccEEEec-----CCCeEEEEECCCCchh-hC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            455788999988534689999985     2478999999999996 88 9999999999999999998888766555 78


Q ss_pred             CCeEEEEEecC
Q psy6405         127 PPVEITLIKDG  137 (548)
Q Consensus       127 ~~VtVtV~RdG  137 (548)
                      ..+.++|.|++
T Consensus        79 ~~v~l~v~R~~   89 (96)
T 2edv_A           79 DSLSITVVRCT   89 (96)
T ss_dssp             SCEEEEEEECC
T ss_pred             CeEEEEEEECC
Confidence            89999999975

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=1.2e-09  Score=96.48  Aligned_cols=89  Identities=18%  Similarity=0.287  Sum_probs=69.5

Q ss_pred             CCCeEEEEEeeCCCC-CceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCC
Q psy6405          48 TSEVSVVVLHRDLPG-NSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRG  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~-~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g  126 (548)
                      ...++.+.+.|.... .+|||++.+..+....+++|..|.++|||+++| |++||+|++|||+++.++++.++...++ +
T Consensus        13 ~~~~~~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~-~   90 (114)
T 2d8i_A           13 PKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLS-Q   90 (114)
T ss_dssp             CCEEEEEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTTSSHHHHT-CCTTCCEEEESSCBGGGCCHHHHHHHHT-S
T ss_pred             cCceEEEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHh-C
Confidence            356789999988522 279999986433222479999999999999999 9999999999999999987666655555 4


Q ss_pred             CCeEEEEEecCc
Q psy6405         127 PPVEITLIKDGA  138 (548)
Q Consensus       127 ~~VtVtV~RdGk  138 (548)
                      ..+.|+|.|...
T Consensus        91 ~~v~l~v~R~p~  102 (114)
T 2d8i_A           91 PSLGLLVRTYPE  102 (114)
T ss_dssp             SEEEEEEEECCC
T ss_pred             CcEEEEEEECCC
Confidence            578888887543

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=98.97  E-value=3.1e-09  Score=93.08  Aligned_cols=86  Identities=33%  Similarity=0.528  Sum_probs=67.6

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      ...+++|.+.+. +.++|||++.++.+. ..+++|..|.++|||+++|+|++||+|++|||.++.+.+..+++..+. .+
T Consensus        22 ~~~~~~V~l~~~-~~~~lG~~l~~~~~~-~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~   99 (114)
T 2gzv_A           22 SMVPGKVTLQKD-AQNLIGISIGGGAQY-CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK   99 (114)
T ss_dssp             CCCCEEEEEECC-TTSCCSEEEEECCC---CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             cCCCEEEEEEEC-CCCcEeEEEEeCCCC-CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            456789999988 367799999987643 247999999999999999999999999999999997766666554443 34


Q ss_pred             CCeEEEEEe
Q psy6405         127 PPVEITLIK  135 (548)
Q Consensus       127 ~~VtVtV~R  135 (548)
                      ..+.++|.+
T Consensus       100 ~~v~l~v~~  108 (114)
T 2gzv_A          100 GEVTIHYNK  108 (114)
T ss_dssp             SEEEEEEEC
T ss_pred             CeEEEEEEe
Confidence            456777654

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=98.97  E-value=2.2e-09  Score=92.29  Aligned_cols=85  Identities=19%  Similarity=0.316  Sum_probs=64.6

Q ss_pred             CCeEEEEEeeCCC-CCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCC
Q psy6405          49 SEVSVVVLHRDLP-GNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGP  127 (548)
Q Consensus        49 ~d~~tV~L~Kd~~-~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~  127 (548)
                      ...+.+.+.|... ..+|||++.........+++|..|.++|||+++| |++||+|++|||+++.+++..++...+. ..
T Consensus         5 ~~~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~l~~~l~-~~   82 (94)
T 3kzd_A            5 KVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLS-QP   82 (94)
T ss_dssp             CEEEEEEEEC------CCSEEEEEECSSSSCEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHH-SS
T ss_pred             cceeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHh-CC
Confidence            3568889998742 3589999987543333579999999999999999 9999999999999999988777665554 45


Q ss_pred             CeEEEEEe
Q psy6405         128 PVEITLIK  135 (548)
Q Consensus       128 ~VtVtV~R  135 (548)
                      .++++|..
T Consensus        83 ~l~ltV~~   90 (94)
T 3kzd_A           83 SLGLLVRT   90 (94)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEe
Confidence            56676653

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=98.97  E-value=2.1e-09  Score=90.41  Aligned_cols=86  Identities=24%  Similarity=0.242  Sum_probs=72.9

Q ss_pred             eEEEEEe-cCcceeEEEecCCCCCC---CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         129 VEITLIK-DGAGLGFSLEGGKDSPF---GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       129 VtVtV~R-dGkgLGfSItgg~~s~l---G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      ..+++.| ...++||+|.++.....   ...+++|..|.++|||+++|+|++||+|++|||.++.++++.++..+++. .
T Consensus         7 ~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~   85 (98)
T 1ihj_A            7 HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE-A   85 (98)
T ss_dssp             EEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH-S
T ss_pred             EEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-C
Confidence            4688888 77889999987654321   12368999999999999999999999999999999999999999999988 5


Q ss_pred             CCceeEEEEec
Q psy6405         205 DGTIQDIKALG  215 (548)
Q Consensus       205 g~~V~LlV~Ri  215 (548)
                      +..+.+.+.|.
T Consensus        86 g~~v~l~v~R~   96 (98)
T 1ihj_A           86 DFKIELEIQTF   96 (98)
T ss_dssp             CSEEEEEEEEC
T ss_pred             CCeEEEEEEeC
Confidence            78899999885

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=98.97  E-value=2.9e-09  Score=88.31  Aligned_cols=87  Identities=22%  Similarity=0.400  Sum_probs=62.0

Q ss_pred             eEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCCe
Q psy6405          51 VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPPV  129 (548)
Q Consensus        51 ~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~V  129 (548)
                      +..+.+.+......|||.+.       .+++|..|.++|||+++|+|++||+|++|||.++.+++..++...+. .+..+
T Consensus         3 ~~~v~~~~~~~~~~~g~~~~-------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v   75 (92)
T 3cyy_A            3 PTKVTLVKSAKNEEYGLRLA-------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKL   75 (92)
T ss_dssp             CEEEEEECSSTTSCCCEEEE-------EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEE
T ss_pred             cEEEEEEeCCCCCCCCEEEe-------CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcE
Confidence            45566655544678998876       36899999999999999999999999999999999777666554443 34578


Q ss_pred             EEEEEecCcceeEEE
Q psy6405         130 EITLIKDGAGLGFSL  144 (548)
Q Consensus       130 tVtV~RdGkgLGfSI  144 (548)
                      .++|.|++..+.+++
T Consensus        76 ~l~v~r~g~~~~~~v   90 (92)
T 3cyy_A           76 KMVVQRDERATLLNV   90 (92)
T ss_dssp             EEEEEC---------
T ss_pred             EEEEEeCCceeeeeC
Confidence            899999877655544

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.97  E-value=1.9e-09  Score=95.36  Aligned_cols=99  Identities=21%  Similarity=0.297  Sum_probs=73.8

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCC-CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDY-ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRG  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~-~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g  126 (548)
                      ..+.+.+.+.+...+.+|||++....+. ...+++|..|.++|||+++|+|++||+|++|||++|.++.....+.....+
T Consensus        17 ~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~l~~~~g   96 (124)
T 1wh1_A           17 ELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEEN   96 (124)
T ss_dssp             SCEECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSHHHHHHHHTCSSC
T ss_pred             cceEEEEEEEecCCCCcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCHHHHHHHHHhCCC
Confidence            3445556666665567899999865321 125899999999999999999999999999999999976544433222357


Q ss_pred             CCeEEEEEecCcceeEEEec
Q psy6405         127 PPVEITLIKDGAGLGFSLEG  146 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItg  146 (548)
                      ..+.|+|.|++..+......
T Consensus        97 ~~v~l~v~R~g~~~~~~~~~  116 (124)
T 1wh1_A           97 KNFSLLIARPELQLDEGWMD  116 (124)
T ss_dssp             CSCCEEEEECSSCCCCCCCC
T ss_pred             CEEEEEEEECCEEeecccCC
Confidence            88999999988766554443

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=98.97  E-value=3.2e-09  Score=87.62  Aligned_cols=83  Identities=27%  Similarity=0.333  Sum_probs=69.3

Q ss_pred             EEEEEe-cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCce
Q psy6405         130 EITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI  208 (548)
Q Consensus       130 tVtV~R-dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V  208 (548)
                      ++++.+ ...++||++.++....   .+++|..|.++|||+++| |++||+|++|||.++.++++.++.++++..+ ..+
T Consensus         3 ~~~v~~~~~~~lG~~l~~~~~~~---~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v   77 (87)
T 2pa1_A            3 ALTVDVAGPAPWGFRITGGRDFH---TPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPL   77 (87)
T ss_dssp             EEEEEECSSSCCSEEEEEEGGGT---EEEEEEEECSSSHHHHTT-CCTTCEEEEETTEESTTCCHHHHHHHHHTCC-SSE
T ss_pred             EEEEEECCCCccCEEEecccCCC---CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeE
Confidence            444443 5567999998765421   258999999999999999 9999999999999999999999999999885 789


Q ss_pred             eEEEEeccc
Q psy6405         209 QDIKALGYD  217 (548)
Q Consensus       209 ~LlV~RilD  217 (548)
                      .+.+.|...
T Consensus        78 ~l~v~R~~~   86 (87)
T 2pa1_A           78 RLQLDRITS   86 (87)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEecCC
Confidence            999988643

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=98.96  E-value=2.3e-09  Score=94.00  Aligned_cols=80  Identities=25%  Similarity=0.298  Sum_probs=64.9

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh--CCC
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK--RGP  127 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk--~g~  127 (548)
                      .+++|.+.|.  ..+|||++.+.     .+++|..|.++|||+++| |++||+|++|||+++.+|+..+++..++  .+.
T Consensus        23 ~~r~v~l~k~--~~~~G~~l~~~-----~~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~   94 (109)
T 2vsv_A           23 MPRSIRFTAE--EGDLGFTLRGN-----APVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGED   94 (109)
T ss_dssp             SCEEEEECCG--GGCCCEEEESS-----SSCEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTS
T ss_pred             CCEEEEEEeC--CCceeEEEeCC-----CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            4688999886  58999999743     368999999999999999 9999999999999999887777655554  233


Q ss_pred             CeEEEEEecC
Q psy6405         128 PVEITLIKDG  137 (548)
Q Consensus       128 ~VtVtV~RdG  137 (548)
                      ++.++|.|..
T Consensus        95 ~v~l~V~~~~  104 (109)
T 2vsv_A           95 EIEMKVVSLL  104 (109)
T ss_dssp             CEEEEEESCC
T ss_pred             eEEEEEEECC
Confidence            4888887743

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=98.96  E-value=3.4e-09  Score=92.89  Aligned_cols=85  Identities=26%  Similarity=0.343  Sum_probs=72.8

Q ss_pred             CCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       125 ~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      ...+..|.+.|...++||++.+.       .+++|..|.++|||+++| |+.||+|++|||.++.++++.++.++++...
T Consensus        21 ~~~~r~v~l~k~~~~~G~~l~~~-------~~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~   92 (109)
T 2vsv_A           21 QSMPRSIRFTAEEGDLGFTLRGN-------APVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFG   92 (109)
T ss_dssp             HHSCEEEEECCGGGCCCEEEESS-------SSCEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred             cCCCEEEEEEeCCCceeEEEeCC-------CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            34667899999888999999643       258899999999999999 9999999999999999999999999999876


Q ss_pred             CCceeEEEEeccc
Q psy6405         205 DGTIQDIKALGYD  217 (548)
Q Consensus       205 g~~V~LlV~RilD  217 (548)
                      +.++.+.+.|..+
T Consensus        93 ~~~v~l~V~~~~~  105 (109)
T 2vsv_A           93 EDEIEMKVVSLLD  105 (109)
T ss_dssp             TSCEEEEEESCC-
T ss_pred             CCeEEEEEEECCC
Confidence            6668888877654

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=98.96  E-value=1.4e-09  Score=94.61  Aligned_cols=92  Identities=32%  Similarity=0.440  Sum_probs=76.5

Q ss_pred             CCCCeEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcC-CCCHHHHHHHHHH
Q psy6405         125 RGPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVT-EMSRIEAWSLLKK  202 (548)
Q Consensus       125 ~g~~VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~-~~t~~EavelLrs  202 (548)
                      ......|++.|. +.++||++.++.....+..+++|..|.++|||+++|+|++||+|++|||.++. ++++.+++.+++.
T Consensus        18 ~~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~   97 (117)
T 2o2t_A           18 GRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQK   97 (117)
T ss_dssp             TSCEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc
Confidence            356678888886 57899999876543222347999999999999999999999999999999998 9999999999988


Q ss_pred             cCCCceeEEEEeccc
Q psy6405         203 LNDGTIQDIKALGYD  217 (548)
Q Consensus       203 ~~g~~V~LlV~RilD  217 (548)
                      . +..+.+++.|...
T Consensus        98 ~-~~~v~l~v~R~~~  111 (117)
T 2o2t_A           98 A-KDTVQLVIARGSL  111 (117)
T ss_dssp             C-CSEEEEEEESSCC
T ss_pred             C-CCEEEEEEEeCCc
Confidence            5 7788999988654

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.96  E-value=1.6e-09  Score=114.11  Aligned_cols=125  Identities=25%  Similarity=0.439  Sum_probs=91.9

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh---C
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK---R  125 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk---~  125 (548)
                      .+++.+.+.+.   .+|||++.++.+   .+++|..|.+||||+++| |++||+|++|||.++.++++.+++..+.   +
T Consensus         8 ~~~~~v~~~k~---~~lG~~i~gg~~---~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~   80 (391)
T 3tsz_A            8 PSMKLVKFRKG---DSVGLRLAGGND---VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPK   80 (391)
T ss_dssp             -CEEEEEEECC---SSCCEEEEEETT---TEEEEEEECTTCHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCT
T ss_pred             CCcEEEEeecC---CceeEEEEecCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhhcC
Confidence            45777888776   479999998764   689999999999999999 9999999999999999988888776654   6


Q ss_pred             CCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcC-CCCCCCEEEEECC
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNG-QLKAGDEILTINN  185 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaG-rLq~GDrILaVNG  185 (548)
                      |..+.++|.|++..+.-.+.....     ..++|.....-.+....+ .++.||.+.-+|-
T Consensus        81 g~~v~l~v~r~~~~~~~~~~~~~~-----~~~~vral~dy~~~~~~~Lsf~~Gdil~V~~~  136 (391)
T 3tsz_A           81 GEEVTILAQKKKDVYRRIVESDVG-----DSFYIRTHFEYEKESPYGLSFNKGEVFRVVDT  136 (391)
T ss_dssp             TSEEEEEEEECHHHHGGGTSSCCS-----CCEEEEECSCBCCSSTTBCCBCTTCEEEEEES
T ss_pred             CCeEEEEEeeCCcccccccccccc-----cccccccccccCCCCCCcceEccCCEEEEEec
Confidence            788999999977543211211111     247777665544433322 3688998766654

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=98.96  E-value=4.3e-09  Score=87.78  Aligned_cols=81  Identities=25%  Similarity=0.340  Sum_probs=69.7

Q ss_pred             CeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCc
Q psy6405         128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGT  207 (548)
Q Consensus       128 ~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~  207 (548)
                      ..+|++.|...++||.+...       .+++|..|.++|||+++| |+.||+|++|||.++.++++.++.++++.. +..
T Consensus         4 ~r~v~l~~~~~g~G~~l~~~-------~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~   74 (91)
T 2f5y_A            4 YRQITIPRGKDGFGFTICCD-------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSC-PSE   74 (91)
T ss_dssp             EEEEEEECBTTBTSEEEECS-------SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTC-SSE
T ss_pred             eEEEEEEeCCCCccEEEecC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCe
Confidence            35788888888899999754       258999999999999999 999999999999999999999999999875 457


Q ss_pred             eeEEEEeccc
Q psy6405         208 IQDIKALGYD  217 (548)
Q Consensus       208 V~LlV~RilD  217 (548)
                      +.+++.|...
T Consensus        75 v~l~v~R~~~   84 (91)
T 2f5y_A           75 IILLVWRMVP   84 (91)
T ss_dssp             EEEEEEECC-
T ss_pred             EEEEEEeCCC
Confidence            8888888643

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=98.96  E-value=2.5e-09  Score=88.82  Aligned_cols=85  Identities=31%  Similarity=0.445  Sum_probs=71.8

Q ss_pred             CCCeEEEEEe-cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhc-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         126 GPPVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKN-GQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       126 g~~VtVtV~R-dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAeka-GrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      +.+.+|++.| .+.++||++.++....   .+++|..|.++|||+++ | |++||+|++|||.++.++++.+++.+++..
T Consensus         3 ~~~~~v~l~k~~~~~lG~~i~~~~~~~---~g~~V~~V~~~spA~~agg-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~   78 (90)
T 1qav_A            3 LQRRRVTVRKADAGGLGISIKGGRENK---MPILISKIFKGLAADQTEA-LFVGDAILSVNGEDLSSATHDEAVQALKKT   78 (90)
T ss_dssp             SSCEEEEEECCTTTCCCEEEEEEGGGT---EEEEEEEECTTSHHHHTTC-CCTTEEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             CccEEEEEEeCCCCCcCEEEEcccCCC---CCEEEEEECCCCHHHhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            4578899998 5678999998754321   36899999999999999 6 999999999999999999999999999886


Q ss_pred             CCCceeEEEEec
Q psy6405         204 NDGTIQDIKALG  215 (548)
Q Consensus       204 ~g~~V~LlV~Ri  215 (548)
                       +..+.+.+.|.
T Consensus        79 -~~~v~l~v~r~   89 (90)
T 1qav_A           79 -GKEVVLEVKYM   89 (90)
T ss_dssp             -CSEEEEEEEEC
T ss_pred             -CCeEEEEEEEe
Confidence             56788888763

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.95  E-value=1.8e-09  Score=94.52  Aligned_cols=90  Identities=30%  Similarity=0.529  Sum_probs=74.5

Q ss_pred             CeEEEEEecC-------cceeEEEecCCCCCC--CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy6405         128 PVEITLIKDG-------AGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWS  198 (548)
Q Consensus       128 ~VtVtV~RdG-------kgLGfSItgg~~s~l--G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~Eave  198 (548)
                      ...|++.|..       .++||+|.++...+.  +..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.
T Consensus        13 ~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~   92 (117)
T 1ujd_A           13 HARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQS   92 (117)
T ss_dssp             EEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             eEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHH
Confidence            3567777765       689999987654321  2236899999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCceeEEEEecccc
Q psy6405         199 LLKKLNDGTIQDIKALGYDL  218 (548)
Q Consensus       199 lLrs~~g~~V~LlV~RilDL  218 (548)
                      +++.. +..+.+++.|....
T Consensus        93 ~l~~~-~~~v~l~v~R~~~~  111 (117)
T 1ujd_A           93 IISQQ-SGEAEICVRLDLNM  111 (117)
T ss_dssp             HHSCC-SSCEEEEEESSCCC
T ss_pred             HHhcC-CCEEEEEEEECCcc
Confidence            99884 67899999887654

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.95  E-value=4.9e-09  Score=87.01  Aligned_cols=83  Identities=24%  Similarity=0.334  Sum_probs=69.6

Q ss_pred             CCeEEEEEecC--cceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         127 PPVEITLIKDG--AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       127 ~~VtVtV~RdG--kgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      ....|++.|..  .++||++..+...    .+++|..|.++|||+++| |++||+|++|||.++.++++.+++.+++.. 
T Consensus         6 ~~~~v~l~k~~~~~~~G~~~~~~~~~----~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-   79 (91)
T 1m5z_A            6 ELHKVTLYKDSGMEDFGFSVADGLLE----KGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAES-   79 (91)
T ss_dssp             EEEEEEEECCTTCSSSSEEEEECTTS----SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTS-
T ss_pred             ceEEEEEEECCCCCCccEEEEeccCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            44678888754  4799999876533    369999999999999999 999999999999999999988888888865 


Q ss_pred             CCceeEEEEec
Q psy6405         205 DGTIQDIKALG  215 (548)
Q Consensus       205 g~~V~LlV~Ri  215 (548)
                      +..+.+.+.|.
T Consensus        80 g~~v~l~v~R~   90 (91)
T 1m5z_A           80 GNKLDLVISRN   90 (91)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCEEEEEEEeC
Confidence            67788888774

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=98.95  E-value=3e-09  Score=89.63  Aligned_cols=84  Identities=24%  Similarity=0.269  Sum_probs=71.4

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      .+..+++.|...++||++......    .+++|..|.++|||+++| |++||+|++|||+++.++++.++.++++...+.
T Consensus         9 ~~~~~~l~~~~~g~G~~~~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   83 (98)
T 2jxo_A            9 RPRLCTMKKGPSGYGFNLHSDKSK----PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDE   83 (98)
T ss_dssp             CCEEEEEECTTTCCCEEEECCCSS----SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTE
T ss_pred             CcEEEEEEeCCCcccEEEEecCCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc
Confidence            346778888888999999876532    369999999999999999 999999999999999999999999999988555


Q ss_pred             ceeEEEEec
Q psy6405         207 TIQDIKALG  215 (548)
Q Consensus       207 ~V~LlV~Ri  215 (548)
                      .+.+++.|.
T Consensus        84 ~~~l~v~R~   92 (98)
T 2jxo_A           84 TKLLVVDRE   92 (98)
T ss_dssp             EEEEECCHH
T ss_pred             EEEEEEECC
Confidence            566777664

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.95  E-value=6.4e-09  Score=90.36  Aligned_cols=96  Identities=24%  Similarity=0.410  Sum_probs=77.1

Q ss_pred             CCeEEEEEec-CcceeEEEecCCCCC-CCC---CCeEEEEeccCChhhh-cCCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy6405         127 PPVEITLIKD-GAGLGFSLEGGKDSP-FGD---QPLTVKKIFTGGCAEK-NGQLKAGDEILTINNVPVTEMSRIEAWSLL  200 (548)
Q Consensus       127 ~~VtVtV~Rd-GkgLGfSItgg~~s~-lG~---~gI~VssV~pgSpAek-aGrLq~GDrILaVNGvsV~~~t~~EavelL  200 (548)
                      .+..|++.|. ..++||+|.++.... .+.   .+++|..|.++|||++ +| |++||+|++|||+++.++++.++.++|
T Consensus        10 ~~~~v~l~~~~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~ag-L~~GD~I~~ing~~v~~~~~~~~~~~l   88 (114)
T 1uew_A           10 QTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAK-LKVGDRILAVNGQSIINMPHADIVKLI   88 (114)
T ss_dssp             CCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSS-CCTTCBEEEETTBCTTTSCHHHHHHHH
T ss_pred             cceEEEEEECCCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            3467888874 578999998764332 111   2679999999999999 88 999999999999999999999999999


Q ss_pred             HHcCCCceeEEEEeccccCCCCCC
Q psy6405         201 KKLNDGTIQDIKALGYDLNSLGYP  224 (548)
Q Consensus       201 rs~~g~~V~LlV~RilDLr~~~~p  224 (548)
                      +. .+..+.+.+.|.........|
T Consensus        89 ~~-~g~~v~l~v~r~~~~~~~~~p  111 (114)
T 1uew_A           89 KD-AGLSVTLRIIPQEELNSPSGP  111 (114)
T ss_dssp             HH-TTTEEEEEECCCSCCCCCCCS
T ss_pred             Hc-CCCeEEEEEEeCCcCCCCCCC
Confidence            98 578899999887665544444

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=98.95  E-value=3.2e-09  Score=87.46  Aligned_cols=84  Identities=33%  Similarity=0.592  Sum_probs=69.9

Q ss_pred             CCCeEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhh-cCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         126 GPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEK-NGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       126 g~~VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAek-aGrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      |++..+++.|. +.++||++.++....   .+++|..|.++|||++ +| |++||+|++|||.++.++++.+++.+++..
T Consensus         1 g~~~~v~l~~~~~~~lG~~i~~~~~~~---~~~~V~~V~~gspA~~~ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   76 (87)
T 4e34_A            1 GPIRKVLLLKEDHEGLGISITGGKEHG---VPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQ   76 (87)
T ss_dssp             CCCEEEEEECCTTBCCCEEEEEEGGGT---EEEEEEEECTTSHHHHHSC-CCTTEEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred             CCEEEEEEEECCCCcccEEEEccCCCC---CCEEEEEECCCCHHHhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            45678888885 468999998764331   2589999999999999 58 999999999999999999999999999876


Q ss_pred             CCCceeEEEEe
Q psy6405         204 NDGTIQDIKAL  214 (548)
Q Consensus       204 ~g~~V~LlV~R  214 (548)
                       +..+.+++.+
T Consensus        77 -~~~v~l~v~~   86 (87)
T 4e34_A           77 -RGEIEFEVVY   86 (87)
T ss_dssp             -CSEEEEEEEE
T ss_pred             -CCeEEEEEEE
Confidence             5577777764

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=98.95  E-value=2.5e-09  Score=95.94  Aligned_cols=80  Identities=24%  Similarity=0.345  Sum_probs=68.8

Q ss_pred             CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEec
Q psy6405         137 GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALG  215 (548)
Q Consensus       137 GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~Ri  215 (548)
                      +.++||+|.++.....+..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++++|+.. .+..+.+++.|.
T Consensus        47 ~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~  126 (131)
T 1wfg_A           47 GAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRS  126 (131)
T ss_dssp             CTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEE
T ss_pred             CCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcC
Confidence            5679999987554433334799999999999999999999999999999999999999999999987 467899999885


Q ss_pred             c
Q psy6405         216 Y  216 (548)
Q Consensus       216 l  216 (548)
                      .
T Consensus       127 g  127 (131)
T 1wfg_A          127 G  127 (131)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=5e-09  Score=89.20  Aligned_cols=90  Identities=26%  Similarity=0.474  Sum_probs=75.4

Q ss_pred             CCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      ...+.+++.|...++||++..+.... +..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++.. +
T Consensus        10 ~~~~~v~l~~~~~g~G~~l~~~~~~~-~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g   87 (104)
T 2djt_A           10 SGHFSVELVRGYAGFGLTLGGGRDVA-GDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAG-G   87 (104)
T ss_dssp             CCCEEEEEECCSSSCCEEEECCEETT-EECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHT-C
T ss_pred             CceEEEEEEeCCCCccEEEEeccCCC-CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-C
Confidence            35578889998889999998754321 123699999999999999999999999999999999999999999999884 7


Q ss_pred             CceeEEEEeccc
Q psy6405         206 GTIQDIKALGYD  217 (548)
Q Consensus       206 ~~V~LlV~RilD  217 (548)
                      ..+.+++.|...
T Consensus        88 ~~v~l~v~R~g~   99 (104)
T 2djt_A           88 PQLHLVIRRPLS   99 (104)
T ss_dssp             SEEEEEECCCCC
T ss_pred             CeEEEEEEECCC
Confidence            788888877644

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=98.94  E-value=7.7e-09  Score=86.65  Aligned_cols=88  Identities=25%  Similarity=0.429  Sum_probs=73.2

Q ss_pred             CeEEEEEecCcceeEEEecCCCCCC---CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         128 PVEITLIKDGAGLGFSLEGGKDSPF---GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       128 ~VtVtV~RdGkgLGfSItgg~~s~l---G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      .+.+.+.+...++||++.++.....   ...+++|..|.++|||+++| |++||+|++|||.++.++++.+++..++. .
T Consensus         4 ~~~v~~~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~-~   81 (97)
T 2w4f_A            4 ELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRG-A   81 (97)
T ss_dssp             EEEEEEECBTTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHT-S
T ss_pred             EEEEEEEeCCCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhC-C
Confidence            4677888888899999987654321   22479999999999999999 99999999999999999998887777776 4


Q ss_pred             CCceeEEEEeccc
Q psy6405         205 DGTIQDIKALGYD  217 (548)
Q Consensus       205 g~~V~LlV~RilD  217 (548)
                      +..+.+.+.|...
T Consensus        82 g~~v~l~v~R~g~   94 (97)
T 2w4f_A           82 GTAVQMRVWRERE   94 (97)
T ss_dssp             CSEEEEEEECCSS
T ss_pred             CCeEEEEEEeCCc
Confidence            7889999988643

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.94  E-value=3.9e-09  Score=91.59  Aligned_cols=91  Identities=30%  Similarity=0.524  Sum_probs=77.2

Q ss_pred             hCCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         124 KRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       124 k~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      .++..+.+++.+...++||++..+.....  .+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++..
T Consensus        14 ~~~~~~~v~l~~~~~glG~~l~~~~~~~~--~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~   91 (116)
T 2dm8_A           14 VPGQEMIIEISKGRSGLGLSIVGGKDTPL--NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQT   91 (116)
T ss_dssp             CTTSCEEEEEECCSSCCCCCCBCCTTSSC--SSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTC
T ss_pred             CCCCEEEEEEEECCCcccEEEeCCCCCCc--CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            34566888898888999999987654321  2699999999999999999999999999999999999999999999876


Q ss_pred             CCCceeEEEEeccc
Q psy6405         204 NDGTIQDIKALGYD  217 (548)
Q Consensus       204 ~g~~V~LlV~RilD  217 (548)
                      . ..+.+.+.|...
T Consensus        92 ~-~~v~l~v~R~~~  104 (116)
T 2dm8_A           92 P-QKVRLVVYRDEA  104 (116)
T ss_dssp             C-SEEEEEEECCSS
T ss_pred             C-CeEEEEEEeCCc
Confidence            4 788898888654

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=98.94  E-value=6.3e-09  Score=89.16  Aligned_cols=89  Identities=22%  Similarity=0.407  Sum_probs=73.2

Q ss_pred             CeEEEEE--ecCcceeEEEecCCCCCC--CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         128 PVEITLI--KDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       128 ~VtVtV~--RdGkgLGfSItgg~~s~l--G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      .+.+++.  +...++||++.++.....  ...+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++. 
T Consensus        13 ~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-   91 (108)
T 2jre_A           13 LYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRN-   91 (108)
T ss_dssp             EEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHH-
T ss_pred             EEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-
Confidence            4667774  466789999987654321  22479999999999999999999999999999999999999999999988 


Q ss_pred             CCCceeEEEEeccc
Q psy6405         204 NDGTIQDIKALGYD  217 (548)
Q Consensus       204 ~g~~V~LlV~RilD  217 (548)
                      .+..+.+.+.|...
T Consensus        92 ~g~~v~l~v~R~~~  105 (108)
T 2jre_A           92 AGNPVRLLLIRRLP  105 (108)
T ss_dssp             HCSEEEEEEEECCC
T ss_pred             CCCeEEEEEEeCCc
Confidence            47788998887643

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=98.93  E-value=3.2e-09  Score=88.59  Aligned_cols=76  Identities=22%  Similarity=0.443  Sum_probs=62.0

Q ss_pred             EEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCCeEE
Q psy6405          53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPPVEI  131 (548)
Q Consensus        53 tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~VtV  131 (548)
                      .+.+.+.....+|||.+.+       +++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++ .+..+.+
T Consensus         3 ~v~l~~~~~~~~~G~~~~~-------gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L   75 (88)
T 3e17_A            3 GVLLMKSRANEEYGLRLGS-------QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQL   75 (88)
T ss_dssp             EEEEECBTTBCCCCEEEEE-------EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEE
T ss_pred             EEEEEeCCCCCCCCEEEeC-------CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            3556665456789999873       6999999999999999999999999999999999999888776554 3456667


Q ss_pred             EEEe
Q psy6405         132 TLIK  135 (548)
Q Consensus       132 tV~R  135 (548)
                      ++.+
T Consensus        76 ~v~~   79 (88)
T 3e17_A           76 VVLR   79 (88)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            6665

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=98.93  E-value=3.6e-09  Score=93.90  Aligned_cols=83  Identities=24%  Similarity=0.403  Sum_probs=68.6

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC---
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR---  125 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~---  125 (548)
                      .+.++|.|.|.  ..||||+|.++.    .+.+|..|.+  +++.+| |++||+|++|||++|.+++|.+++..++.   
T Consensus        11 ~~~~~V~L~Kg--~~G~GFsI~~~~----~g~~V~~I~~--~~~~aG-L~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~   81 (113)
T 3soe_A           11 GLLVTIPLIKG--PKGFGFAIADSP----TGQKVKMILD--SQWCQG-LQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPV   81 (113)
T ss_dssp             CEEEEEEEECB--TTBSSEEEEEET----TEEEEEEESC--GGGSTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHSCT
T ss_pred             CCEEEEEEEEC--CCcccEEEeCCC----CCcEEEEecC--hHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            56789999998  579999997543    2567889988  578888 99999999999999999999998777663   


Q ss_pred             CCCeEEEEEecCcce
Q psy6405         126 GPPVEITLIKDGAGL  140 (548)
Q Consensus       126 g~~VtVtV~RdGkgL  140 (548)
                      +..+.|+|.|.+...
T Consensus        82 G~~v~L~V~R~g~~~   96 (113)
T 3soe_A           82 GADVPLLILRGGPPS   96 (113)
T ss_dssp             TCEEEEEEEESSCC-
T ss_pred             CCEEEEEEEECCccC
Confidence            668999999977543

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=98.93  E-value=5.8e-09  Score=98.35  Aligned_cols=93  Identities=18%  Similarity=0.280  Sum_probs=79.8

Q ss_pred             hhCCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCC--CCHHHHHHHH
Q psy6405         123 LKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE--MSRIEAWSLL  200 (548)
Q Consensus       123 lk~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~--~t~~EavelL  200 (548)
                      +.++..+.|++.|.+.++||+|.++.....+ .+++|..|.++|||+++|+|+.||+|++|||+++.+  +++.+++.++
T Consensus        14 ~~~~~~~~v~~~~~~~~lG~~i~~g~~~~~~-~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~   92 (206)
T 3r0h_A           14 IKPNKKILIELKVEKKPMGVIVCGGKNNHVT-TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLF   92 (206)
T ss_dssp             CCTTSCEEEEEECTTSCCCEEEECCSSSSCC-SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHH
T ss_pred             CCCCCEEEEEEEeCCCCcCEEEecccCCCCC-CCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHH
Confidence            4567789999999999999999987765432 479999999999999998899999999999999999  8999999999


Q ss_pred             HHcCCCceeEEEEecc
Q psy6405         201 KKLNDGTIQDIKALGY  216 (548)
Q Consensus       201 rs~~g~~V~LlV~Ril  216 (548)
                      +...+..+.+++.|..
T Consensus        93 ~~~~~~~v~l~v~R~~  108 (206)
T 3r0h_A           93 HTTYEKAVTLTVFRAD  108 (206)
T ss_dssp             HSCCSSEEEEEEECCS
T ss_pred             HhcCCCceEEEEEecc
Confidence            8875444888888754

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.93  E-value=4.2e-09  Score=92.99  Aligned_cols=90  Identities=32%  Similarity=0.398  Sum_probs=77.3

Q ss_pred             CCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       125 ~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      ++..+.|.+.|...++||++.++....  ..+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++.. 
T Consensus        23 ~~~~~~v~l~k~~~glG~~l~~~~~~~--~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~-   99 (124)
T 2daz_A           23 PGELHIIELEKDKNGLGLSLAGNKDRS--RMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTA-   99 (124)
T ss_dssp             SSEEEEEEEECCSSCCCEEEECBSSTT--SCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHS-
T ss_pred             CCceEEEEEEeCCCccCEEEeccCCCC--cCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            455678889999899999998765432  23799999999999999999999999999999999999999999999887 


Q ss_pred             CCceeEEEEeccc
Q psy6405         205 DGTIQDIKALGYD  217 (548)
Q Consensus       205 g~~V~LlV~RilD  217 (548)
                      +..+.+++.|...
T Consensus       100 ~~~v~l~v~R~~~  112 (124)
T 2daz_A          100 PSKVKLVFIRNED  112 (124)
T ss_dssp             CSEEEEEEEECTT
T ss_pred             CCeEEEEEEeCCC
Confidence            4588999988754

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=98.93  E-value=4.1e-09  Score=98.70  Aligned_cols=82  Identities=28%  Similarity=0.496  Sum_probs=67.5

Q ss_pred             CceEEEEEeCCCC-------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCCeEEEEE
Q psy6405          63 NSVGITLAGGSDY-------ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPPVEITLI  134 (548)
Q Consensus        63 ~GLGfsIagG~d~-------~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~VtVtV~  134 (548)
                      .+|||++.+|.+.       ...+++|..|.++|||++ | |++||+|++|||+++.++++.+++..++ .+..+.|+|.
T Consensus         2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-g-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~   79 (195)
T 2qbw_A            2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV   79 (195)
T ss_dssp             CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEE
T ss_pred             CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence            5899999998641       246899999999999999 9 9999999999999999999888765554 4568999999


Q ss_pred             e---cCcceeEEEec
Q psy6405         135 K---DGAGLGFSLEG  146 (548)
Q Consensus       135 R---dGkgLGfSItg  146 (548)
                      |   ++....+.+..
T Consensus        80 r~~~~G~~~~~~v~~   94 (195)
T 2qbw_A           80 REVGNGAKQEIRVRV   94 (195)
T ss_dssp             EECSSSCEEEEEEEE
T ss_pred             EcCCCCCCceeEeEe
Confidence            9   66665555543

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.93  E-value=1.8e-09  Score=116.48  Aligned_cols=123  Identities=25%  Similarity=0.444  Sum_probs=90.1

Q ss_pred             eEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh---CCC
Q psy6405          51 VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK---RGP  127 (548)
Q Consensus        51 ~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk---~g~  127 (548)
                      ++.|.+.+.   .+|||++.++.+   .+++|..|.+||||+++| |++||+|++|||+++.++++.+++..++   ++.
T Consensus         2 ~r~V~l~k~---~~lG~~i~gg~~---~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~   74 (468)
T 3shw_A            2 MKLVKFRKG---DSVGLRLAGGND---VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGE   74 (468)
T ss_dssp             EEEEEEECC---SSCCEEEEEETT---TEEEEEEECSSSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTS
T ss_pred             ceEEEEecC---CccceEEEccCc---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCC
Confidence            577888875   789999998764   589999999999999999 9999999999999999998888765554   578


Q ss_pred             CeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcC-CCCCCCEEEEECC
Q psy6405         128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNG-QLKAGDEILTINN  185 (548)
Q Consensus       128 ~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaG-rLq~GDrILaVNG  185 (548)
                      .++|+|.|.+..+.-.+..+..     ..++|.......+....+ .++.||++.-+|-
T Consensus        75 ~v~L~V~r~g~~~~~~~~~~~g-----~s~yVralfdy~~~~~~~LsF~~GDIL~V~d~  128 (468)
T 3shw_A           75 EVTILAQKKKDVYRRIVESDVG-----DSFYIRTHFEYEKESPYGLSFNKGEVFRVVDT  128 (468)
T ss_dssp             EEEEEEEECHHHHHHHHHHTCC-----CCEEEEECSCBCCSSTTBCCBCTTCEEEEEES
T ss_pred             EEEEEEEECCccchhhhccccc-----cccccccccCcCCCCCCCceEccCCEEEEeec
Confidence            8999999977544322222111     136666554433332222 2688887766653

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.93  E-value=5.3e-09  Score=91.28  Aligned_cols=89  Identities=24%  Similarity=0.458  Sum_probs=74.1

Q ss_pred             CeEEEEEecC-cceeEEEecCCCCCC---CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         128 PVEITLIKDG-AGLGFSLEGGKDSPF---GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       128 ~VtVtV~RdG-kgLGfSItgg~~s~l---G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      ...|++.|.. .++||+|.++...+.   +..+++|..|.++|||+ +| |++||+|++|||+++.++++.+++.+++..
T Consensus        15 ~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~g-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~   92 (117)
T 2csj_A           15 QYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQLRKS   92 (117)
T ss_dssp             EEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHHHHHS
T ss_pred             EEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-cc-CCCCCEEEEECCEECCCcCHHHHHHHHhcC
Confidence            3667788775 899999998765432   23579999999999997 77 999999999999999999999999999985


Q ss_pred             CCCceeEEEEeccccC
Q psy6405         204 NDGTIQDIKALGYDLN  219 (548)
Q Consensus       204 ~g~~V~LlV~RilDLr  219 (548)
                       +..+.+++.|.....
T Consensus        93 -~~~v~l~v~R~~~~~  107 (117)
T 2csj_A           93 -GKIAAIVVKRPRKVQ  107 (117)
T ss_dssp             -CSEEEEEEEEEEECC
T ss_pred             -CCeEEEEEEECCccc
Confidence             778999998865543

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=98.93  E-value=1.3e-09  Score=109.59  Aligned_cols=87  Identities=29%  Similarity=0.484  Sum_probs=74.4

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhh-cCCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADR-DGRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaq-AGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      .+++.|.|.|. +..+|||+|.++.+. ..+++|..|.++|||++ +| |++||+|++|||++|.++++.+++..++ .+
T Consensus        76 ~~~r~V~L~k~-~~~glGf~I~gg~d~-~~gi~V~~V~~gspA~~~aG-L~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g  152 (263)
T 1z87_A           76 LQRRRVTVRKA-DAGGLGISIKGGREN-KMPILISKIFKGLAADQTEA-LFVGDAILSVNGEDLSSATHDEAVQALKKTG  152 (263)
T ss_dssp             CSSEEECCCTT-TTCCCCCEEEEETTT-TEEEEEEECCTTSHHHHCTT-CCSSCEEEEESSCBCTTSCHHHHHHHHHHCC
T ss_pred             CccEEEEEEeC-CCCCEeEEEeeccCC-CCCEEEEEECCCCHHHHhCC-CCCCCEEEEECCEECCCcCHHHHHHHHhcCC
Confidence            35799999987 378999999998754 35799999999999999 68 9999999999999999999998776554 46


Q ss_pred             CCeEEEEEecCc
Q psy6405         127 PPVEITLIKDGA  138 (548)
Q Consensus       127 ~~VtVtV~RdGk  138 (548)
                      ..+.|+|.|.+.
T Consensus       153 ~~V~L~V~R~~~  164 (263)
T 1z87_A          153 KEVVLEVKYMKE  164 (263)
T ss_dssp             SCCCEEEECCSS
T ss_pred             CeEEEEEEeCcc
Confidence            789999998654

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=3.7e-10  Score=100.21  Aligned_cols=90  Identities=29%  Similarity=0.451  Sum_probs=71.0

Q ss_pred             CCCCCeEEEEEeeCCCCCceEEEEEeCCCC---------------------------CCCCeEEEEEcCCChhhhcCCCC
Q psy6405          46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDY---------------------------ESKEITVHKVISGTPADRDGRLQ   98 (548)
Q Consensus        46 ~~~~d~~tV~L~Kd~~~~GLGfsIagG~d~---------------------------~~~gVvVs~V~pGSPAaqAGrLq   98 (548)
                      .....+++|.|.|.  ..+|||++.+...+                           ...+++|..|.++|||+++| |+
T Consensus         4 ~~~~~~r~v~l~r~--~~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aG-L~   80 (126)
T 2yuy_A            4 GSSGGPKTVTLKRT--SQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LC   80 (126)
T ss_dssp             SCSSSCCCEEEECC--SSSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHT-CC
T ss_pred             CCCCCCEEEEEEEC--CCCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcC-CC
Confidence            34566788999987  47899999752110                           12468999999999999999 99


Q ss_pred             CCCEEEEECCeeccCccHHHHHHHhh-CCCCeEEEEEecCc
Q psy6405          99 KGDRILSINGKSMKGLTHKESLAILK-RGPPVEITLIKDGA  138 (548)
Q Consensus        99 ~GDrILaINGv~V~~~s~~~aV~~lk-~g~~VtVtV~RdGk  138 (548)
                      +||+|++|||++|.++++.+++..++ .+..+.|+|.|.+.
T Consensus        81 ~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~  121 (126)
T 2yuy_A           81 TGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDS  121 (126)
T ss_dssp             SSCCCCEETTEECSSCCHHHHHHHHHTCTTEEEEECCCCCC
T ss_pred             CCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence            99999999999999888888766554 36778888887654

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=98.92  E-value=4e-09  Score=86.32  Aligned_cols=81  Identities=30%  Similarity=0.435  Sum_probs=67.2

Q ss_pred             eEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCce
Q psy6405         129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI  208 (548)
Q Consensus       129 VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V  208 (548)
                      +.|++ +.+.++||++.++....   .+++|..|.++|||+++| |++||+|++|||.++.++++.++...++.. +..+
T Consensus         3 ~~v~l-~~~~~~G~~l~gg~~~~---~~v~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v   76 (85)
T 1rgw_A            3 YSVTL-TGPGPWGFRLQGGKDFN---MPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSA-SYNL   76 (85)
T ss_dssp             EEEEE-CCSSCCCEEECCCGGGT---SCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTC-SSCE
T ss_pred             EEEEE-eCCCccCEEEEeccCCC---CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHcC-CCeE
Confidence            45666 45578999998765432   368999999999999999 999999999999999999999999888776 4568


Q ss_pred             eEEEEec
Q psy6405         209 QDIKALG  215 (548)
Q Consensus       209 ~LlV~Ri  215 (548)
                      .+.+.|.
T Consensus        77 ~l~v~R~   83 (85)
T 1rgw_A           77 SLTLQKS   83 (85)
T ss_dssp             EEEEESC
T ss_pred             EEEEEeC
Confidence            8888764

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=98.92  E-value=6.3e-09  Score=93.49  Aligned_cols=89  Identities=20%  Similarity=0.279  Sum_probs=73.4

Q ss_pred             CCCeEEEEEec-CcceeEEEecCCCCC---------CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHH
Q psy6405         126 GPPVEITLIKD-GAGLGFSLEGGKDSP---------FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIE  195 (548)
Q Consensus       126 g~~VtVtV~Rd-GkgLGfSItgg~~s~---------lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~E  195 (548)
                      ..+..+++.|. ..++||+|.++....         ....+++|..|.++|||+++| |+.||+|++|||+++.++++.+
T Consensus        26 ~~~r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~  104 (132)
T 3l4f_D           26 IKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQ  104 (132)
T ss_dssp             CCCCEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGT-CCTTCEEEEESSSBCTTSCHHH
T ss_pred             CCCEEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHH
Confidence            34578888884 478999998875421         111368999999999999999 9999999999999999999999


Q ss_pred             HHHHHHHcCCCceeEEEEecc
Q psy6405         196 AWSLLKKLNDGTIQDIKALGY  216 (548)
Q Consensus       196 avelLrs~~g~~V~LlV~Ril  216 (548)
                      ++.+++.. +..+.+++.+..
T Consensus       105 ~~~~l~~~-g~~v~l~v~~~~  124 (132)
T 3l4f_D          105 VVNMIRQG-GNTLMVKVVMVT  124 (132)
T ss_dssp             HHHHHHHT-TTEEEEEEECCC
T ss_pred             HHHHHHcC-CCEEEEEEEECC
Confidence            99999985 678888887653

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=98.92  E-value=5.7e-09  Score=89.97  Aligned_cols=81  Identities=37%  Similarity=0.583  Sum_probs=69.5

Q ss_pred             ecCcceeEEEecCCCCCC--CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEE
Q psy6405         135 KDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIK  212 (548)
Q Consensus       135 RdGkgLGfSItgg~~s~l--G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV  212 (548)
                      .+..++||+|.++.....  +..+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++.. +..+.+++
T Consensus        10 ~~~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~-~~~v~l~v   88 (106)
T 4amh_A           10 RGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNT-SDFVYLKV   88 (106)
T ss_dssp             --CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSC-CSEEEEEE
T ss_pred             CCCCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEE
Confidence            456789999998876543  334799999999999999999999999999999999999999999999886 56889999


Q ss_pred             Eecc
Q psy6405         213 ALGY  216 (548)
Q Consensus       213 ~Ril  216 (548)
                      .|..
T Consensus        89 ~R~~   92 (106)
T 4amh_A           89 AKPG   92 (106)
T ss_dssp             ECCS
T ss_pred             EeCC
Confidence            8864

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=98.92  E-value=8.6e-09  Score=86.43  Aligned_cols=81  Identities=30%  Similarity=0.449  Sum_probs=70.3

Q ss_pred             CCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      +.+..|++.|+..++||++...       .+++|..|.++|||+++| |+.||+|++|||+++.++++.++++.++  .+
T Consensus         7 ~~~r~v~l~~~~~~~G~~l~~~-------~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~--~g   76 (93)
T 2dls_A            7 GVQRCVIIQKDQHGFGFTVSGD-------RIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIK--SG   76 (93)
T ss_dssp             CCEEEEEEECSSSSCCEEEECS-------SSCEEEEECSSSTTTTTT-CCSSCEEEEETTEECSSSCHHHHHHHHT--SS
T ss_pred             CCCEEEEEEeCCCceeEEEeCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhc--CC
Confidence            4557788899999999999753       258999999999999999 9999999999999999999888888776  37


Q ss_pred             CceeEEEEecc
Q psy6405         206 GTIQDIKALGY  216 (548)
Q Consensus       206 ~~V~LlV~Ril  216 (548)
                      ..+.+.+.|..
T Consensus        77 ~~v~l~v~R~~   87 (93)
T 2dls_A           77 AYVALTLLGSS   87 (93)
T ss_dssp             SEEEEEEECCC
T ss_pred             CEEEEEEEECC
Confidence            88999998864

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.91  E-value=6e-09  Score=88.39  Aligned_cols=82  Identities=23%  Similarity=0.428  Sum_probs=67.1

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh---
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK---  124 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk---  124 (548)
                      ..+.+.+.+.+.  ..+|||++....    .+++|..|.++  |+++| |++||+|++|||+++.++++.+++..++   
T Consensus         8 ~~~~~~v~l~~~--~~g~G~~i~~~~----~Gv~V~~v~~~--a~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   78 (96)
T 1ujv_A            8 QAELMTLTIVKG--AQGFGFTIADSP----TGQRVKQILDI--QGCPG-LCEGDLIVEINQQNVQNLSHTEVVDILKDCP   78 (96)
T ss_dssp             CCCCEEEEEECC--SSSSSEEEEEET----TEEEEEEESCG--GGSTT-CCSSCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             CceEEEEEEEeC--CCceeEEEEcCC----CCEEEEEEecc--cccCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            456788899887  689999997432    36899999983  78899 9999999999999999998888765554   


Q ss_pred             CCCCeEEEEEecCc
Q psy6405         125 RGPPVEITLIKDGA  138 (548)
Q Consensus       125 ~g~~VtVtV~RdGk  138 (548)
                      .+..+.++|.|++.
T Consensus        79 ~g~~v~l~v~R~g~   92 (96)
T 1ujv_A           79 IGSETSLIIHRGSG   92 (96)
T ss_dssp             TTSEEEEEEECCSS
T ss_pred             CCCEEEEEEEECCC
Confidence            37789999998765

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=98.91  E-value=4.1e-09  Score=87.33  Aligned_cols=80  Identities=23%  Similarity=0.261  Sum_probs=59.3

Q ss_pred             EEEEeeCC-CCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHH---HHHhhCCCC
Q psy6405          53 VVVLHRDL-PGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES---LAILKRGPP  128 (548)
Q Consensus        53 tV~L~Kd~-~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~a---V~~lk~g~~  128 (548)
                      .+.+.+.. ...+|||++...    ..+++|..|.++|||+++| |++||+|++|||.++.+.+..+.   +....++..
T Consensus         6 ~~~~~~~~~~~~~lG~~~~~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~   80 (90)
T 2eaq_A            6 RISINQTPGKSLDFGFTIKWD----IPGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGH   80 (90)
T ss_dssp             EEEEECCTTCSSCCSEEEEEE----TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTE
T ss_pred             EEEEEecCCCCCcccEEEEec----CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCE
Confidence            44555442 234799998743    2479999999999999999 99999999999999944333333   233345788


Q ss_pred             eEEEEEecC
Q psy6405         129 VEITLIKDG  137 (548)
Q Consensus       129 VtVtV~RdG  137 (548)
                      +.++|.|++
T Consensus        81 v~l~v~R~g   89 (90)
T 2eaq_A           81 LVMDVRRYG   89 (90)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEeCC
Confidence            999999875

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.91  E-value=6.4e-09  Score=90.62  Aligned_cols=91  Identities=25%  Similarity=0.376  Sum_probs=76.3

Q ss_pred             CCCeEEEEEec-CcceeEEEecCCCCCC------CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy6405         126 GPPVEITLIKD-GAGLGFSLEGGKDSPF------GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWS  198 (548)
Q Consensus       126 g~~VtVtV~Rd-GkgLGfSItgg~~s~l------G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~Eave  198 (548)
                      ..+..|++.|. +.++||+|.++.....      ...+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.
T Consensus        14 ~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~   93 (117)
T 2ehr_A           14 GPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVE   93 (117)
T ss_dssp             CCCEEEEECCCSSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHH
T ss_pred             CCCEEEEEEeCCCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            45678888886 4889999988764321      1247999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCceeEEEEeccc
Q psy6405         199 LLKKLNDGTIQDIKALGYD  217 (548)
Q Consensus       199 lLrs~~g~~V~LlV~RilD  217 (548)
                      +++.. +..+.+++.|..+
T Consensus        94 ~~~~~-g~~v~l~v~r~~~  111 (117)
T 2ehr_A           94 AIKNA-GNPVVFIVQSLSS  111 (117)
T ss_dssp             HHHTS-CSSEEEEECCBSC
T ss_pred             HHHcC-CCeEEEEEEECCC
Confidence            99885 7788888877644

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=98.91  E-value=4.6e-09  Score=86.79  Aligned_cols=83  Identities=19%  Similarity=0.324  Sum_probs=67.7

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHH-cCC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK-LND  205 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs-~~g  205 (548)
                      ..++|++.|...++||++......    .+++|..+ ++|||+ +| |++||+|++|||.++.++++.++.++++. ..+
T Consensus         3 ~~~~v~l~k~~~g~G~~~~~~~~~----~~~~v~~v-~~spA~-aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g   75 (88)
T 3bpu_A            3 ELITVHIVKGPMGFGFTIADSPGG----GGQRVKQI-VDSPRS-RG-LKEGDLIVEVNKKNVQALTHNQVVDMLVESPKG   75 (88)
T ss_dssp             EEEEEEEECBTTBSSCEEEECTTS----SSEEEEEC-CC--CC-TT-CCTTCEEEEETTEECTTSCHHHHHHHHHTSCTT
T ss_pred             cEEEEEEEcCCCceeEEEEecCCC----CcEEEEEe-cCChhH-hC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCC
Confidence            346788899889999999865432    25888887 899999 88 99999999999999999999999999985 356


Q ss_pred             CceeEEEEecc
Q psy6405         206 GTIQDIKALGY  216 (548)
Q Consensus       206 ~~V~LlV~Ril  216 (548)
                      ..+.+.+.|..
T Consensus        76 ~~v~l~v~R~g   86 (88)
T 3bpu_A           76 SEVTLLVQRQT   86 (88)
T ss_dssp             CEEEEEEEEEC
T ss_pred             CEEEEEEEeCC
Confidence            78899888764

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.91  E-value=1.3e-08  Score=87.06  Aligned_cols=84  Identities=30%  Similarity=0.428  Sum_probs=72.3

Q ss_pred             CCCeEEEEEecC-cceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         126 GPPVEITLIKDG-AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       126 g~~VtVtV~RdG-kgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      ..+..|++.|.. ..+||++..+....   .+++|..|.++|||+++| |++||+|++|||+++.++++.+++++++.  
T Consensus        14 ~~~~~v~l~k~~~~~lG~~~~~~~~~~---~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~--   87 (104)
T 1wi2_A           14 FLPRIVTLKKPPGAQLGFNIRGGKASQ---LGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKT--   87 (104)
T ss_dssp             SCCEEEEECCCTTCCCSEEEECCSSSC---CCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHH--
T ss_pred             CCCEEEEEEeCCCCCccEEEEcccCCC---CCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC--
Confidence            346788888865 78999998765432   369999999999999999 99999999999999999999999999998  


Q ss_pred             CCceeEEEEec
Q psy6405         205 DGTIQDIKALG  215 (548)
Q Consensus       205 g~~V~LlV~Ri  215 (548)
                      +..+.+.+.|.
T Consensus        88 ~~~v~l~v~r~   98 (104)
T 1wi2_A           88 AREISMRVRFF   98 (104)
T ss_dssp             SSSEEEEEECC
T ss_pred             CCEEEEEEEEC
Confidence            57888888775

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=98.91  E-value=7.5e-09  Score=87.15  Aligned_cols=87  Identities=20%  Similarity=0.257  Sum_probs=69.6

Q ss_pred             CCCeEEEEEecC-cceeEEEec-CCC---CCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy6405         126 GPPVEITLIKDG-AGLGFSLEG-GKD---SPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLL  200 (548)
Q Consensus       126 g~~VtVtV~RdG-kgLGfSItg-g~~---s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelL  200 (548)
                      ..+..|++.|.. .++||+|.+ +..   ..-...+++|..|.++|||+++| |++||+|++|||.++.++++.++.+++
T Consensus         3 ~~~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l   81 (96)
T 2ego_A            3 QQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDII   81 (96)
T ss_dssp             CCEEEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CccEEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            355788888876 689999986 111   00001368999999999999999 999999999999999999999999999


Q ss_pred             HHcCCCceeEEEEe
Q psy6405         201 KKLNDGTIQDIKAL  214 (548)
Q Consensus       201 rs~~g~~V~LlV~R  214 (548)
                      +.. +..+.+.+.+
T Consensus        82 ~~~-~~~v~l~v~~   94 (96)
T 2ego_A           82 KAS-GNVLRLETLY   94 (96)
T ss_dssp             HHT-TTEEEEEEEC
T ss_pred             HhC-CCeEEEEEEE
Confidence            987 4578887765

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.91  E-value=3.2e-09  Score=95.58  Aligned_cols=83  Identities=23%  Similarity=0.356  Sum_probs=69.4

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh---
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK---  124 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk---  124 (548)
                      ....+.+.+.+.  +.+|||++.+.    ..+++|..|.++|||+++|+|++||+|++|||.+|.++++.+++..++   
T Consensus        25 ~~~~~~~~l~k~--~~glG~~i~~~----~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~   98 (126)
T 1wif_A           25 LNKVIQTKLTVG--NLGLGLVVIQN----GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNIT   98 (126)
T ss_dssp             CCCEEEEEEECC--TTCCCCCEEEE----TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCC
T ss_pred             CCceEEEEEecC--CceEeEEEEcC----CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCC
Confidence            456778888887  78999998853    247899999999999999999999999999999998777777665554   


Q ss_pred             CCCCeEEEEEec
Q psy6405         125 RGPPVEITLIKD  136 (548)
Q Consensus       125 ~g~~VtVtV~Rd  136 (548)
                      ++..+.|+|.|+
T Consensus        99 ~G~~v~l~V~R~  110 (126)
T 1wif_A           99 IGTVLQIKAYRG  110 (126)
T ss_dssp             SSCEEEEEEESS
T ss_pred             CCCEEEEEEEEC
Confidence            477899999986

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.91  E-value=1.4e-08  Score=88.72  Aligned_cols=88  Identities=31%  Similarity=0.528  Sum_probs=72.3

Q ss_pred             eEEEEEe-cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCc
Q psy6405         129 VEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGT  207 (548)
Q Consensus       129 VtVtV~R-dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~  207 (548)
                      ..+.+.| ...++||+|.++....  ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++..++..
T Consensus        17 ~~v~l~~~~~~~lG~~i~g~~~~~--~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~   94 (119)
T 1x6d_A           17 HVTILHKEEGAGLGFSLAGGADLE--NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPR   94 (119)
T ss_dssp             EEEEEECCTTSCCSEEEECCSSSS--CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSS
T ss_pred             EEEEEEeCCCCccCEEEeCCCCCC--CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCe
Confidence            4455555 4678999998765431  236999999999999999999999999999999999999999999999886666


Q ss_pred             eeEEEEecccc
Q psy6405         208 IQDIKALGYDL  218 (548)
Q Consensus       208 V~LlV~RilDL  218 (548)
                      +.+++.|....
T Consensus        95 ~~l~v~R~~~~  105 (119)
T 1x6d_A           95 QAVIVTRKLTP  105 (119)
T ss_dssp             EEEEEEECCCS
T ss_pred             EEEEEEcCCCc
Confidence            66777776543

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=98.90  E-value=1.5e-09  Score=88.74  Aligned_cols=79  Identities=30%  Similarity=0.521  Sum_probs=68.3

Q ss_pred             CeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCc
Q psy6405         128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGT  207 (548)
Q Consensus       128 ~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~  207 (548)
                      +..|++.|...++||++....       +++|..|.++|||+++| |+.||+|++|||.++.++++.++.++++.. +..
T Consensus         3 ~r~v~l~~~~~g~G~~~~~~~-------~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~   73 (83)
T 2kv8_A            3 VRSVEVARGRAGYGFTLSGQA-------PCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKC-SGV   73 (83)
T ss_dssp             EEEEEECCCSSCCSCBCCCSS-------SCBCCBCCTTSTTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHTTC-SSC
T ss_pred             cEEEEEEeCCCcccEEEEcCC-------CeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCe
Confidence            467888898888999886532       58899999999999999 999999999999999999999999999776 456


Q ss_pred             eeEEEEec
Q psy6405         208 IQDIKALG  215 (548)
Q Consensus       208 V~LlV~Ri  215 (548)
                      +.+++.|.
T Consensus        74 v~l~v~R~   81 (83)
T 2kv8_A           74 LHMVIAEG   81 (83)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEcC
Confidence            88888774

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.90  E-value=5.1e-09  Score=89.30  Aligned_cols=90  Identities=28%  Similarity=0.469  Sum_probs=74.8

Q ss_pred             CCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       125 ~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      .+..++|++. .+.++||++.++....   .+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++.. 
T Consensus         3 ~g~~~~v~l~-~~~~~G~~l~gg~~~~---~~v~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~-   76 (103)
T 1wf7_A            3 SGSSGSVSLV-GPAPWGFRLQGGKDFN---MPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKAC-   76 (103)
T ss_dssp             CCCCEEEEEE-SSSCCSCCEEEETTTT---EEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHC-
T ss_pred             CCCEEEEEEe-CCCccCEEEeccccCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            4667788877 5678999998765432   258999999999999999 999999999999999999999999888876 


Q ss_pred             CCceeEEEEeccccCC
Q psy6405         205 DGTIQDIKALGYDLNS  220 (548)
Q Consensus       205 g~~V~LlV~RilDLr~  220 (548)
                      +..+.+.+.|......
T Consensus        77 g~~v~l~v~R~g~~~~   92 (103)
T 1wf7_A           77 TGSLNMTLQRASAAAK   92 (103)
T ss_dssp             SSEEEEEECCCSCCCC
T ss_pred             CCeEEEEEEeCCCcCC
Confidence            6788999988765443

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.90  E-value=1e-08  Score=89.79  Aligned_cols=91  Identities=22%  Similarity=0.307  Sum_probs=75.8

Q ss_pred             CCCeEEEEEecC-cceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         126 GPPVEITLIKDG-AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       126 g~~VtVtV~RdG-kgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      ..++.|.+.|.. .++||++..+....  ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++++|+. .
T Consensus        14 ~~~~~v~l~k~~~~~lG~~i~~~~~~~--~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~-~   90 (117)
T 1v62_A           14 SGPLMVEIVKTPGSALGISLTTTSLRN--KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLAS-I   90 (117)
T ss_dssp             SSSEEEEEECCTTCCCCCEEEEECCSS--SCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHS-C
T ss_pred             CCcEEEEEEcCCCCcccEEEEccCCCC--CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-C
Confidence            356788888865 78999998764321  1249999999999999999999999999999999999999999999996 4


Q ss_pred             CCceeEEEEeccccC
Q psy6405         205 DGTIQDIKALGYDLN  219 (548)
Q Consensus       205 g~~V~LlV~RilDLr  219 (548)
                      +..+.+.+.|.....
T Consensus        91 g~~v~l~v~r~~~~~  105 (117)
T 1v62_A           91 SEKVRLEILPVPQSQ  105 (117)
T ss_dssp             SSEEEEEECCBTTBC
T ss_pred             CCeEEEEEEECCCCC
Confidence            788999998876543

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=98.90  E-value=1.1e-08  Score=94.94  Aligned_cols=88  Identities=35%  Similarity=0.556  Sum_probs=76.4

Q ss_pred             CeEEEEEecCcceeEEEecCCCCCC--CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         128 PVEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       128 ~VtVtV~RdGkgLGfSItgg~~s~l--G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      ...|++.|++.++||+|.++...+.  +..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++.. +
T Consensus         6 ~~~v~l~~~~~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g   84 (196)
T 3gsl_A            6 YEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA-G   84 (196)
T ss_dssp             EEEEEEECBTTBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTS-C
T ss_pred             EEEEEEEECCCCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-C
Confidence            3678899999999999998876532  235799999999999999999999999999999999999999998888876 6


Q ss_pred             CceeEEEEecc
Q psy6405         206 GTIQDIKALGY  216 (548)
Q Consensus       206 ~~V~LlV~Ril  216 (548)
                      ..+.+++.|..
T Consensus        85 ~~v~l~v~r~~   95 (196)
T 3gsl_A           85 SIVRLYVMRRK   95 (196)
T ss_dssp             SEEEEEEEEEC
T ss_pred             CcEEEEEEecC
Confidence            78888888754

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.89  E-value=7.1e-10  Score=94.77  Aligned_cols=86  Identities=24%  Similarity=0.416  Sum_probs=67.8

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-CCC
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPP  128 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-g~~  128 (548)
                      +.+++.+..   ..+|||++.++.+. ..+++|..|.++|||+++| |++||+|++|||+++.+++..++...+.. +..
T Consensus         5 ~~~~v~~~~---~~~lG~~l~~g~~~-~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   79 (103)
T 1v5l_A            5 SSGNVVLPG---PAPWGFRLSGGIDF-NQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQ   79 (103)
T ss_dssp             CCBCCEEES---SSCCSBCCEEETTT-TEEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCCSE
T ss_pred             CEEEEEEcC---CCCcCEEEeccccC-CCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            344555543   46999999987653 2478999999999999999 99999999999999999777666555543 678


Q ss_pred             eEEEEEecCcce
Q psy6405         129 VEITLIKDGAGL  140 (548)
Q Consensus       129 VtVtV~RdGkgL  140 (548)
                      +.|+|.|++..+
T Consensus        80 v~l~v~R~g~~~   91 (103)
T 1v5l_A           80 LCLKIDRAETRL   91 (103)
T ss_dssp             EECEECCCTTTT
T ss_pred             EEEEEEECCeEc
Confidence            899998877643

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.88  E-value=1.7e-09  Score=92.04  Aligned_cols=81  Identities=22%  Similarity=0.345  Sum_probs=65.7

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGP  127 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~  127 (548)
                      .+.+.+.+.+.  ..+|||.+...     .+++|..|.++|||+++| |++||+|++|||+++.++++.+++..++ .+.
T Consensus        14 ~~~~~v~l~~~--~~g~G~~~~~~-----~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~   85 (100)
T 1whd_A           14 GEKLQITIRRG--KDGFGFTICCD-----SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPS   85 (100)
T ss_dssp             CEEEEEEEECC--SSSSSCBCCCS-----SSCBCCBCCTTSHHHHHT-CCSSCEEEEETTEECTTCCHHHHHHHHHHCSS
T ss_pred             cceEEEEEECC--CCeeeEEEeCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            44567778776  67899988753     468999999999999999 9999999999999999988777665554 345


Q ss_pred             CeEEEEEecC
Q psy6405         128 PVEITLIKDG  137 (548)
Q Consensus       128 ~VtVtV~RdG  137 (548)
                      .+.++|.|.+
T Consensus        86 ~v~l~v~R~~   95 (100)
T 1whd_A           86 EIILLVWRVS   95 (100)
T ss_dssp             EEEEEEEECC
T ss_pred             eEEEEEEECC
Confidence            5888888864

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.88  E-value=1.6e-08  Score=87.04  Aligned_cols=89  Identities=25%  Similarity=0.407  Sum_probs=74.2

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCC---CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSP---FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~---lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      ..+.+.+.+...++||+|.++....   ....+++|..|.++|||+++| |++||+|++|||+++.++++.+++..++. 
T Consensus        15 ~~~~~~l~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-   92 (110)
T 1x5q_A           15 EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRG-   92 (110)
T ss_dssp             EEEEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHS-
T ss_pred             ceEEEEEecCCCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHhhC-
Confidence            4467888888889999998765421   122479999999999999999 99999999999999999998888888877 


Q ss_pred             CCCceeEEEEeccc
Q psy6405         204 NDGTIQDIKALGYD  217 (548)
Q Consensus       204 ~g~~V~LlV~RilD  217 (548)
                      .+..+.+.+.|...
T Consensus        93 ~g~~v~l~v~R~g~  106 (110)
T 1x5q_A           93 AGTAVQMRVWRESG  106 (110)
T ss_dssp             CCSEEEEEEEECSS
T ss_pred             CCCeEEEEEEECCc
Confidence            57889999988654

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=98.88  E-value=1.7e-08  Score=84.02  Aligned_cols=88  Identities=19%  Similarity=0.320  Sum_probs=72.5

Q ss_pred             CeEEEEEecCcceeEEEecCCCCCC-CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         128 PVEITLIKDGAGLGFSLEGGKDSPF-GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       128 ~VtVtV~RdGkgLGfSItgg~~s~l-G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      .+++++.+...++||++........ ...+++|..|.++|||+++|+|++||+|++|||.++.++++.++..+++. .+.
T Consensus         5 ~~~v~l~~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~   83 (97)
T 2iwn_A            5 TFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH-TGQ   83 (97)
T ss_dssp             EEEEEEECBTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCS
T ss_pred             EEEEEEecCCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCC
Confidence            3567777888889999987643211 12479999999999999999999999999999999999999999988887 477


Q ss_pred             ceeEEEEecc
Q psy6405         207 TIQDIKALGY  216 (548)
Q Consensus       207 ~V~LlV~Ril  216 (548)
                      .+.+.+.|..
T Consensus        84 ~v~l~v~r~g   93 (97)
T 2iwn_A           84 TVLLTLMRRG   93 (97)
T ss_dssp             EEEEEEEEEE
T ss_pred             eEEEEEEeCC
Confidence            8888887754

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.88  E-value=9.5e-09  Score=86.62  Aligned_cols=78  Identities=23%  Similarity=0.434  Sum_probs=60.9

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGP  127 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~  127 (548)
                      .+...+.+.+.....+|||.+.+       + +|..|.++|||+++| |++||+|++|||+++.++++.+++..++ .+.
T Consensus        10 ~~~~~~~i~~~~~~~~lG~~~~~-------G-~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~   80 (90)
T 1y7n_A           10 GNVTTVLIRRPDLRYQLGFSVQN-------G-IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVG   80 (90)
T ss_dssp             SSCEEEEEEESSTTSCCCEEEET-------T-EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCCE
T ss_pred             CCcceEEEEeCCCccccCeEecC-------C-EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            34455666555557899999863       2 899999999999999 9999999999999998877777665553 466


Q ss_pred             CeEEEEEe
Q psy6405         128 PVEITLIK  135 (548)
Q Consensus       128 ~VtVtV~R  135 (548)
                      .+.++|.+
T Consensus        81 ~v~l~v~p   88 (90)
T 1y7n_A           81 EIHMKTMP   88 (90)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEEEE
Confidence            67777764

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=98.88  E-value=1e-08  Score=87.52  Aligned_cols=84  Identities=31%  Similarity=0.370  Sum_probs=71.1

Q ss_pred             CeEEEEEecC-cceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         128 PVEITLIKDG-AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       128 ~VtVtV~RdG-kgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      +..+++.|.. ..+||.+......    .+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++.. +.
T Consensus         2 ~r~v~l~~~~~~~~G~~l~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~   75 (106)
T 3ngh_A            2 PRESKLSKQEGQNYGFFLRIEKDT----DGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKS-GN   75 (106)
T ss_dssp             CEEEEEECCTTCCCCCEEECCTTC----CSCEEECCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHT-TT
T ss_pred             CEEEEEEeCCCCeeCEEEEEEeCC----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC-CC
Confidence            4567777754 7789998876433    368999999999999999 999999999999999999999999999864 77


Q ss_pred             ceeEEEEeccc
Q psy6405         207 TIQDIKALGYD  217 (548)
Q Consensus       207 ~V~LlV~RilD  217 (548)
                      .+.+.+.|...
T Consensus        76 ~v~l~v~r~~~   86 (106)
T 3ngh_A           76 SVTLLVLDGDS   86 (106)
T ss_dssp             EEEEEEECHHH
T ss_pred             EEEEEEEECCe
Confidence            89999988654

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.88  E-value=8.3e-09  Score=87.67  Aligned_cols=85  Identities=21%  Similarity=0.280  Sum_probs=73.5

Q ss_pred             CCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      ..+..|++.|...++||++......    .+++|..|.++|||+++| |++||+|++|||.++.++++.++.++++.. +
T Consensus         5 ~~~r~v~l~k~~~g~G~~l~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g   78 (102)
T 2d90_A            5 SSGRVVVIKKGSNGYGFYLRAGPEQ----KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKG-G   78 (102)
T ss_dssp             SSSEEEEEECCSSSSSCEEEECSSS----SSEEEECCCTTSTTTTTT-CCTTCEEEEESSCBCTTSCHHHHHHHHHHS-T
T ss_pred             CCCEEEEEeeCCCCccEEEEeecCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-C
Confidence            3567899999989999999875432    369999999999999999 999999999999999999989999999885 6


Q ss_pred             CceeEEEEecc
Q psy6405         206 GTIQDIKALGY  216 (548)
Q Consensus       206 ~~V~LlV~Ril  216 (548)
                      ..+.+.+.|..
T Consensus        79 ~~v~l~v~r~~   89 (102)
T 2d90_A           79 DQTTLLVLDKE   89 (102)
T ss_dssp             TEEEEEECSTT
T ss_pred             CEEEEEEEECC
Confidence            78888887654

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.87  E-value=5.1e-09  Score=91.50  Aligned_cols=88  Identities=23%  Similarity=0.338  Sum_probs=73.4

Q ss_pred             CCCeEEEEEecCc-ceeEEEecCCCCCCCCCCeEEEEeccCChhhhc--CCCCCCCEEEEECCEEcCCCCHHHHHHHHHH
Q psy6405         126 GPPVEITLIKDGA-GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKN--GQLKAGDEILTINNVPVTEMSRIEAWSLLKK  202 (548)
Q Consensus       126 g~~VtVtV~RdGk-gLGfSItgg~~s~lG~~gI~VssV~pgSpAeka--GrLq~GDrILaVNGvsV~~~t~~EavelLrs  202 (548)
                      +..+.|++.|... .+||++.++....   .+++|..|.++|||+++  | |++||+|++|||.++.++++.+++.+++.
T Consensus        14 ~~~~~v~l~k~~~~~~G~~l~gg~~~~---~~v~V~~V~~~spA~~a~gG-L~~GD~Il~ing~~v~~~~~~~~~~~~~~   89 (119)
T 2cs5_A           14 DNLVLIRMKPDENGRFGFNVKGGYDQK---MPVIVSRVAPGTPADLCVPR-LNEGDQVVLINGRDIAEHTHDQVVLFIKA   89 (119)
T ss_dssp             SCCEEEEECCCSSSCCSEEEEEEGGGT---EEEEEEEECSSSTTTSSSSC-CCTTCEEEEETTBCTTSSCHHHHHHHHHH
T ss_pred             CCeEEEEEEeCCCCCcCEEEecccCCC---CCeEEEEECCCCHHHHhhcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            4567888888654 4999998765331   25899999999999999  7 99999999999999999999999999988


Q ss_pred             cCC---CceeEEEEeccc
Q psy6405         203 LND---GTIQDIKALGYD  217 (548)
Q Consensus       203 ~~g---~~V~LlV~RilD  217 (548)
                      ..+   ..+.+++.|...
T Consensus        90 ~~~~~~~~v~l~v~R~~~  107 (119)
T 2cs5_A           90 SCERHSGELMLLVRPNAV  107 (119)
T ss_dssp             HHHCCSSCEEEEEECCCC
T ss_pred             ccccCCCEEEEEEEcccc
Confidence            743   578999988643

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=98.87  E-value=5.9e-09  Score=89.31  Aligned_cols=85  Identities=33%  Similarity=0.564  Sum_probs=70.3

Q ss_pred             CCCeEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhc-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         126 GPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKN-GQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       126 g~~VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAeka-GrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      +....+++.|. +.++||++.++....   .+++|..|.++|||+++ | |++||+|++|||+++.++++.+++.+++..
T Consensus         8 ~~~~~v~l~~~~~~~lG~~l~~g~~~~---~~~~V~~V~~~s~A~~a~g-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~   83 (103)
T 2dc2_A            8 GPIRKVLLLKEDHEGLGISITGGKEHG---VPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQ   83 (103)
T ss_dssp             -CEEEEEEECCSSSCCCEEEEEEGGGT---EEEEEEEECTTSHHHHHTC-CCSSEEEEEETTEESTTSCHHHHHHHHHHC
T ss_pred             CCcEEEEEEeCCCCccCEEEEeccCCC---CCEEEEEECCCCHHHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            44567777764 478999998765331   25899999999999996 7 999999999999999999999999999987


Q ss_pred             CCCceeEEEEec
Q psy6405         204 NDGTIQDIKALG  215 (548)
Q Consensus       204 ~g~~V~LlV~Ri  215 (548)
                       +..+.+.+.+.
T Consensus        84 -~~~v~l~v~~~   94 (103)
T 2dc2_A           84 -RGEIEFEVVYV   94 (103)
T ss_dssp             -CSEEEEEEEEC
T ss_pred             -CCcEEEEEEec
Confidence             45788887764

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=98.87  E-value=9.2e-09  Score=91.25  Aligned_cols=84  Identities=26%  Similarity=0.362  Sum_probs=71.4

Q ss_pred             CCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       125 ~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      .+..++|++.|...++||+|..+..      +.+|..|.+  +++.+| |++||+|++|||+++.+++|.+++++|++.+
T Consensus        10 ~~~~~~V~L~Kg~~G~GFsI~~~~~------g~~V~~I~~--~~~~aG-L~~GD~Il~VNG~~v~~~~h~evv~~lk~~~   80 (113)
T 3soe_A           10 AGLLVTIPLIKGPKGFGFAIADSPT------GQKVKMILD--SQWCQG-LQKGDIIKEIYHQNVQNLTHLQVVEVLKQFP   80 (113)
T ss_dssp             HCEEEEEEEECBTTBSSEEEEEETT------EEEEEEESC--GGGSTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHSC
T ss_pred             CCCEEEEEEEECCCcccEEEeCCCC------CcEEEEecC--hHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4566899999999999999965432      366888877  477777 9999999999999999999999999999875


Q ss_pred             -CCceeEEEEeccc
Q psy6405         205 -DGTIQDIKALGYD  217 (548)
Q Consensus       205 -g~~V~LlV~RilD  217 (548)
                       +..+.++|.|...
T Consensus        81 ~G~~v~L~V~R~g~   94 (113)
T 3soe_A           81 VGADVPLLILRGGP   94 (113)
T ss_dssp             TTCEEEEEEEESSC
T ss_pred             CCCEEEEEEEECCc
Confidence             6789999999764

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.87  E-value=2e-08  Score=88.98  Aligned_cols=90  Identities=18%  Similarity=0.354  Sum_probs=75.1

Q ss_pred             CeEEEEEe-cCcceeEEEecCCCCCC--CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         128 PVEITLIK-DGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       128 ~VtVtV~R-dGkgLGfSItgg~~s~l--G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      .+.|.+.| ...++||++.+......  ...+++|..|.++|||+++|+|++||+|++|||.++.++++.+++++++. .
T Consensus        16 ~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~-~   94 (129)
T 2dmz_A           16 TYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN-A   94 (129)
T ss_dssp             EEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHH-C
T ss_pred             EEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-C
Confidence            36677744 67789999987543322  22479999999999999999999999999999999999999999999998 6


Q ss_pred             CCceeEEEEecccc
Q psy6405         205 DGTIQDIKALGYDL  218 (548)
Q Consensus       205 g~~V~LlV~RilDL  218 (548)
                      +..+.+.+.|....
T Consensus        95 ~~~v~l~v~R~~~~  108 (129)
T 2dmz_A           95 GQVVHLTLVRRKTS  108 (129)
T ss_dssp             CSSEEEEEEEESSS
T ss_pred             CCeEEEEEEeCCcc
Confidence            88999999987653

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=98.86  E-value=1.5e-08  Score=89.41  Aligned_cols=84  Identities=25%  Similarity=0.381  Sum_probs=71.1

Q ss_pred             CeEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         128 PVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       128 ~VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      +..+++.|. ..++||++.++....   .+++|..|.++|||+++|+|+.||+|++|||.++.++++.+++.++++. +.
T Consensus        20 ~~~v~l~k~~~~~lG~~i~gg~~~~---~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~-~~   95 (125)
T 3hpk_A           20 PGKVTLQKDAQNLIGISIGGGAQYC---PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV-KG   95 (125)
T ss_dssp             EEEEEEECCTTSCCCEEEEECSSCC---SSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHS-CS
T ss_pred             CeEEEEEeCCCCCcCEEEeccCCCC---CCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CC
Confidence            356677774 457999998876432   3689999999999999999999999999999999999999999999997 44


Q ss_pred             ceeEEEEec
Q psy6405         207 TIQDIKALG  215 (548)
Q Consensus       207 ~V~LlV~Ri  215 (548)
                      .+.+.+.|.
T Consensus        96 ~v~l~v~r~  104 (125)
T 3hpk_A           96 EVTIHYNKL  104 (125)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEEC
Confidence            688888874

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=1.2e-08  Score=85.65  Aligned_cols=84  Identities=30%  Similarity=0.415  Sum_probs=70.0

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      .++.|++ +....+||++.++....   .+++|..|.++|||+++| |++||+|++|||+++.++++.++..+++.. +.
T Consensus         8 ~~~~v~l-~~~~~~G~~l~gg~~~~---~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~   81 (94)
T 2eeg_A            8 MPHSVTL-RGPSPWGFRLVGGRDFS---APLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGC-HD   81 (94)
T ss_dssp             CCEEEEE-CCSSCCSCCEECCTTTT---SCCEECCCCSSSHHHHTT-CCTTCEEEEETTEETTTCCHHHHHHHHHTC-CS
T ss_pred             ceEEEEE-eCCCccCEEEECccCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CC
Confidence            4566777 45578999998866432   368999999999999999 999999999999999999988999888874 67


Q ss_pred             ceeEEEEecc
Q psy6405         207 TIQDIKALGY  216 (548)
Q Consensus       207 ~V~LlV~Ril  216 (548)
                      .+.+.+.|..
T Consensus        82 ~v~l~v~R~g   91 (94)
T 2eeg_A           82 HLTLSVSSGP   91 (94)
T ss_dssp             CEEEEEECCS
T ss_pred             eEEEEEEeCC
Confidence            8888887753

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=9.5e-09  Score=87.73  Aligned_cols=86  Identities=24%  Similarity=0.322  Sum_probs=73.3

Q ss_pred             CCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      ..+..|++.|.+.++||++......    .+++|..|.++|||+++| |++||+|++|||.++.++++.++...++.. +
T Consensus         7 ~~~r~v~l~k~~~~~G~~l~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~   80 (106)
T 2eei_A            7 GQPRLCYLVKEGGSYGFSLKTVQGK----KGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKKS-G   80 (106)
T ss_dssp             SSSEEEEEECCSSSCSCCEECCSSC----CSCEECCCCTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHH-C
T ss_pred             CCCEEEEEEECCCCCCEEEEeccCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC-C
Confidence            4567889999888999999765432    368999999999999999 999999999999999999999999999876 5


Q ss_pred             CceeEEEEeccc
Q psy6405         206 GTIQDIKALGYD  217 (548)
Q Consensus       206 ~~V~LlV~RilD  217 (548)
                      ..+.+++.|...
T Consensus        81 ~~v~l~v~r~~~   92 (106)
T 2eei_A           81 SRVMFLLVDKET   92 (106)
T ss_dssp             SEEEEEECCTTT
T ss_pred             CeEEEEEEcCch
Confidence            678888877543

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=98.86  E-value=8.1e-09  Score=88.34  Aligned_cols=86  Identities=23%  Similarity=0.364  Sum_probs=71.3

Q ss_pred             CCCeEEEEEecC-cceeEEEecCCCCCCCCCCeEEEEeccCChhhhcC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         126 GPPVEITLIKDG-AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNG-QLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       126 g~~VtVtV~RdG-kgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaG-rLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      .....+.+.|.. .++||++.++....   .+++|..|.++|||+++| +|++||+|++|||.++.++++.+++.+++..
T Consensus        16 ~~~~~v~l~~~~~~~~G~~~~gg~~~~---~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~   92 (107)
T 3nfk_A           16 DNLVLIRMKPDENGRFGFNVKGGYDQK---MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS   92 (107)
T ss_dssp             CCCEEEEECCCTTSCCCEEEEEEGGGT---EEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCG
T ss_pred             CCEEEEEEEcCCCCCCCEEEEccCCCC---CCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            445677777765 78999998754321   258999999999999999 6999999999999999999999999999887


Q ss_pred             CC---CceeEEEEe
Q psy6405         204 ND---GTIQDIKAL  214 (548)
Q Consensus       204 ~g---~~V~LlV~R  214 (548)
                      ..   ..+.+++.|
T Consensus        93 ~~~~~~~v~l~v~r  106 (107)
T 3nfk_A           93 CERHSGELMLLVRP  106 (107)
T ss_dssp             GGSBTTBEEEEEEC
T ss_pred             cccCCcEEEEEEEc
Confidence            42   478888876

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=98.85  E-value=1.4e-08  Score=86.22  Aligned_cols=75  Identities=31%  Similarity=0.440  Sum_probs=63.6

Q ss_pred             ceeEEEecCCCCC---------CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCcee
Q psy6405         139 GLGFSLEGGKDSP---------FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQ  209 (548)
Q Consensus       139 gLGfSItgg~~s~---------lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~  209 (548)
                      .+||++.++....         ....+++|..|.++|||+++| |++||+|++|||.++.++++.++.+.++...+..+.
T Consensus        20 ~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~   98 (104)
T 3sfj_A           20 ILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVR   98 (104)
T ss_dssp             ECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEE
T ss_pred             cccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEE
Confidence            5999998654421         123479999999999999999 999999999999999999999999999876677888


Q ss_pred             EEEEe
Q psy6405         210 DIKAL  214 (548)
Q Consensus       210 LlV~R  214 (548)
                      +.+.|
T Consensus        99 l~v~R  103 (104)
T 3sfj_A           99 LLVTR  103 (104)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            88876

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=98.85  E-value=1.2e-08  Score=84.81  Aligned_cols=83  Identities=29%  Similarity=0.370  Sum_probs=69.4

Q ss_pred             eEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCce
Q psy6405         129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI  208 (548)
Q Consensus       129 VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V  208 (548)
                      +.+++. .+.++||++.++....   .+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++. .+..+
T Consensus         5 ~~v~~~-~~~~~G~~l~~~~~~~---~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v   78 (91)
T 2pkt_A            5 QQIDLQ-GPGPWGFRLVGGKDFE---QPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKG-CTDNL   78 (91)
T ss_dssp             EEEEEE-SSSCCSEEEEEEGGGT---EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEE
T ss_pred             EEEEEC-CCCCCCEEEEccCCCC---CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeE
Confidence            344444 4578999998764321   258999999999999999 99999999999999999999999999998 68889


Q ss_pred             eEEEEeccc
Q psy6405         209 QDIKALGYD  217 (548)
Q Consensus       209 ~LlV~RilD  217 (548)
                      .+.+.|...
T Consensus        79 ~l~v~R~g~   87 (91)
T 2pkt_A           79 TLTVARSEH   87 (91)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEECCc
Confidence            999988654

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=98.85  E-value=1.4e-08  Score=88.56  Aligned_cols=86  Identities=31%  Similarity=0.516  Sum_probs=74.1

Q ss_pred             CCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      .....|++.|...++||++......    .+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++.. +
T Consensus        13 ~~~~~v~l~k~~~glG~~l~~~~~~----~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~   87 (119)
T 1tp5_A           13 REPRRIVIHRGSTGLGFNIVGGEDG----EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA-G   87 (119)
T ss_dssp             CSCEEEEEECTTSCCCEEEEECGGG----CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTS-C
T ss_pred             CccEEEEEEECCCCccEEEecCCCC----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-C
Confidence            4568899999888999999876532    3699999999999999999999999999999999999988888888775 6


Q ss_pred             CceeEEEEecc
Q psy6405         206 GTIQDIKALGY  216 (548)
Q Consensus       206 ~~V~LlV~Ril  216 (548)
                      ..+.+.+.|..
T Consensus        88 ~~v~l~v~r~~   98 (119)
T 1tp5_A           88 QTVTIIAQYKP   98 (119)
T ss_dssp             SEEEEEEEECH
T ss_pred             CeEEEEEEECC
Confidence            78888888754

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=98.84  E-value=2.1e-08  Score=89.17  Aligned_cols=86  Identities=29%  Similarity=0.465  Sum_probs=72.1

Q ss_pred             CCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHH-cC
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK-LN  204 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs-~~  204 (548)
                      ...+.+...+.+..+||++..+...     +++|..|.++|||+++| |++||+|++|||+++.++++.++.++++. ..
T Consensus        27 ~p~~~~~~~~~~~~lG~~l~~~~~~-----gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~  100 (124)
T 3tsv_A           27 RPSMKLVKFRKGDSVGLRLAGGNDV-----GIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPK  100 (124)
T ss_dssp             -CCCEEEEEECSSCCCEEEEECTTS-----CEEEEEECTTCHHHHTT-CCTTEEEEEETTEECSSCCHHHHHHHHHHSCT
T ss_pred             CCCeEEEEcCCCCceeEEEecCCCC-----CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCC
Confidence            4556666667778999999875432     69999999999999999 99999999999999999999899998876 45


Q ss_pred             CCceeEEEEeccc
Q psy6405         205 DGTIQDIKALGYD  217 (548)
Q Consensus       205 g~~V~LlV~RilD  217 (548)
                      +..+.+++.|..+
T Consensus       101 g~~v~l~v~R~~~  113 (124)
T 3tsv_A          101 GEEVTILAQKKKD  113 (124)
T ss_dssp             TCEEEEEEEECHH
T ss_pred             CCEEEEEEEECCc
Confidence            7788999888654

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=98.84  E-value=1.3e-08  Score=87.29  Aligned_cols=81  Identities=31%  Similarity=0.362  Sum_probs=68.2

Q ss_pred             CeEEEEEe-cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         128 PVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       128 ~VtVtV~R-dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      +..+.+.| .+.++|+++.....     .+++|..|.++|||+++|+|++||+|++|||.++.+++..++.++++.. +.
T Consensus        13 ~~~v~l~K~~~~~lG~~l~~~~~-----~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~-~~   86 (97)
T 2ejy_A           13 VRLIQFEKVTEEPMGICLKLNEK-----QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET-KG   86 (97)
T ss_dssp             CEEEEEEECSSSCCSEEEEECTT-----CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHC-CE
T ss_pred             cEEEEEEeCCCCCeeEEEEeCCC-----CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CC
Confidence            46777776 56789999986433     2699999999999999999999999999999999998888999999986 55


Q ss_pred             ceeEEEEe
Q psy6405         207 TIQDIKAL  214 (548)
Q Consensus       207 ~V~LlV~R  214 (548)
                      .+.+.+.+
T Consensus        87 ~v~L~V~~   94 (97)
T 2ejy_A           87 MISLKVIP   94 (97)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEEEE
Confidence            77777654

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=98.84  E-value=2.3e-08  Score=83.77  Aligned_cols=83  Identities=33%  Similarity=0.499  Sum_probs=68.1

Q ss_pred             eEEEEEecCcceeEEEecCCC---CCC--CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         129 VEITLIKDGAGLGFSLEGGKD---SPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       129 VtVtV~RdGkgLGfSItgg~~---s~l--G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      ++|++.|.. ++||+|.++..   .+.  ...+++|..|.++|||++ | |++||+|++|||.++.++++.+++..++..
T Consensus         5 ~~v~l~~~~-~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   81 (95)
T 1mfg_A            5 IRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTF   81 (95)
T ss_dssp             EEEEEECSS-SCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCBHHHHHHHHHHC
T ss_pred             EEEEECCCC-CCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-C-CCCCCEEEEECCEEcCCCCHHHHHHHhhcC
Confidence            456666654 89999987653   111  234799999999999999 8 999999999999999999999999998865


Q ss_pred             CCCceeEEEEec
Q psy6405         204 NDGTIQDIKALG  215 (548)
Q Consensus       204 ~g~~V~LlV~Ri  215 (548)
                       +..+.+.+.|.
T Consensus        82 -~~~v~l~v~R~   92 (95)
T 1mfg_A           82 -QNTVELIIVRE   92 (95)
T ss_dssp             -CSEEEEEEEEE
T ss_pred             -CCeEEEEEEeC
Confidence             67888888875

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=98.84  E-value=3.3e-08  Score=84.49  Aligned_cols=88  Identities=24%  Similarity=0.422  Sum_probs=71.4

Q ss_pred             CeEEEEEec-CcceeEEEecCCCCCC---CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         128 PVEITLIKD-GAGLGFSLEGGKDSPF---GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       128 ~VtVtV~Rd-GkgLGfSItgg~~s~l---G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      ...|++.|. +.++||++.++...+.   +..+++|..|.++|||+ +| |++||+|++|||.++.++++.+++..++..
T Consensus         8 ~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   85 (107)
T 2h2b_A            8 QHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQ-LQENDRVAMVNGVSMDNVEHAFAVQQLRKS   85 (107)
T ss_dssp             EEEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TT-BCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             eEEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hC-CCCCCEEEEECCEECCCccHHHHHHHhhCC
Confidence            467888887 4789999987665321   23479999999999999 88 999999999999999999987777666643


Q ss_pred             CCCceeEEEEecccc
Q psy6405         204 NDGTIQDIKALGYDL  218 (548)
Q Consensus       204 ~g~~V~LlV~RilDL  218 (548)
                       +..+.+.+.|....
T Consensus        86 -g~~v~l~v~R~~~~   99 (107)
T 2h2b_A           86 -GKNAKITIRRKKGG   99 (107)
T ss_dssp             -CSEEEEEEEEESCC
T ss_pred             -CCEEEEEEEECCCC
Confidence             67889999887543

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=98.84  E-value=2.6e-08  Score=84.49  Aligned_cols=89  Identities=22%  Similarity=0.349  Sum_probs=70.6

Q ss_pred             CCeEEEEEecC-cceeEEEecCCCCCC------CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHH
Q psy6405         127 PPVEITLIKDG-AGLGFSLEGGKDSPF------GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSL  199 (548)
Q Consensus       127 ~~VtVtV~RdG-kgLGfSItgg~~s~l------G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~Eavel  199 (548)
                      ++.++.+.|.. ..+|+++.+......      ...+++|..|.++|||+++|+|++||+|++|||.++.++++.++.++
T Consensus         4 dp~~v~l~~~~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~   83 (103)
T 2fcf_A            4 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA   83 (103)
T ss_dssp             SCEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CCEEEEEEeCCCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            45778887754 568999987543211      11379999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCceeEEEEecc
Q psy6405         200 LKKLNDGTIQDIKALGY  216 (548)
Q Consensus       200 Lrs~~g~~V~LlV~Ril  216 (548)
                      ++... ..+.+.+.|..
T Consensus        84 l~~~~-~~v~l~v~r~~   99 (103)
T 2fcf_A           84 IRKAG-NPVVFMVQSII   99 (103)
T ss_dssp             HHTCC-SSEEEEEECCC
T ss_pred             HHhCC-CcEEEEEEECC
Confidence            99874 48888888754

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=98.84  E-value=9.5e-09  Score=85.08  Aligned_cols=82  Identities=27%  Similarity=0.426  Sum_probs=67.9

Q ss_pred             eEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCce
Q psy6405         129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI  208 (548)
Q Consensus       129 VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V  208 (548)
                      ++|++. .+.++||++.++....   .+++|..|.++|||+++| |++||+|++|||+++.++++.++..+++.. +..+
T Consensus         5 ~~v~~~-~~~~~G~~l~gg~~~~---~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v   78 (89)
T 2q3g_A            5 FKVVLE-GPAPWGFRLQGGKDFN---VPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRAC-GERL   78 (89)
T ss_dssp             EEEEEE-SSSCCCEEEEEEGGGT---EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHTC-TTEE
T ss_pred             EEEEEc-CCCcccEEEECcCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEE
Confidence            455554 4578999998754321   358999999999999999 999999999999999999999999999876 6778


Q ss_pred             eEEEEecc
Q psy6405         209 QDIKALGY  216 (548)
Q Consensus       209 ~LlV~Ril  216 (548)
                      .+.+.|..
T Consensus        79 ~l~v~R~~   86 (89)
T 2q3g_A           79 SLGLSRAI   86 (89)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEeCC
Confidence            88888754

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=98.83  E-value=1.3e-08  Score=85.89  Aligned_cols=87  Identities=25%  Similarity=0.229  Sum_probs=69.8

Q ss_pred             eEEEEEecCcceeEEEecCCCCC----CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         129 VEITLIKDGAGLGFSLEGGKDSP----FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       129 VtVtV~RdGkgLGfSItgg~~s~----lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      .++++.|.+.++||++.......    ....+++|..|.++|||+++| |+.||+|++|||.++.++++.++..+++.. 
T Consensus         4 ~~v~l~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-   81 (99)
T 3khf_A            4 PPIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKS-   81 (99)
T ss_dssp             CCEEEEC-CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHHS-
T ss_pred             CCEEEEeCCCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC-
Confidence            45778888999999997543211    101246899999999999999 999999999999999999999999999954 


Q ss_pred             CCceeEEEEeccc
Q psy6405         205 DGTIQDIKALGYD  217 (548)
Q Consensus       205 g~~V~LlV~RilD  217 (548)
                      +..+.+.+.|...
T Consensus        82 g~~v~l~v~r~~~   94 (99)
T 3khf_A           82 GNKISLRTTALEN   94 (99)
T ss_dssp             CSEEEEEEECSCS
T ss_pred             CCEEEEEEEECCC
Confidence            7788999888543

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=98.82  E-value=3.9e-09  Score=94.08  Aligned_cols=83  Identities=31%  Similarity=0.435  Sum_probs=69.2

Q ss_pred             ecCcceeEEEecCCCCCC-CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc------CCCc
Q psy6405         135 KDGAGLGFSLEGGKDSPF-GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL------NDGT  207 (548)
Q Consensus       135 RdGkgLGfSItgg~~s~l-G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~------~g~~  207 (548)
                      +...++||+|.++..... +..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++++|+..      .+..
T Consensus        34 ~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g~~~~~  113 (127)
T 1wg6_A           34 SGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGM  113 (127)
T ss_dssp             STTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCE
T ss_pred             CCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhccccCCCCE
Confidence            566789999987643211 123699999999999999999999999999999999999999999999975      4678


Q ss_pred             eeEEEEeccc
Q psy6405         208 IQDIKALGYD  217 (548)
Q Consensus       208 V~LlV~RilD  217 (548)
                      |.+++.|...
T Consensus       114 v~l~v~R~~~  123 (127)
T 1wg6_A          114 IQLVILRRSG  123 (127)
T ss_dssp             EEEEEEECSC
T ss_pred             EEEEEEeCCC
Confidence            9999988653

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.82  E-value=5.4e-09  Score=90.29  Aligned_cols=89  Identities=25%  Similarity=0.426  Sum_probs=73.6

Q ss_pred             CeEEEEEecC-cceeEEEecCCCCC------CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy6405         128 PVEITLIKDG-AGLGFSLEGGKDSP------FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLL  200 (548)
Q Consensus       128 ~VtVtV~RdG-kgLGfSItgg~~s~------lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelL  200 (548)
                      ...|++.|.. .++||+|.++....      -...+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.++
T Consensus        10 ~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l   89 (111)
T 1uju_A           10 LRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLL   89 (111)
T ss_dssp             SSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHH
T ss_pred             cEEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4668888764 88999999876321      1124799999999999999999999999999999999999999999999


Q ss_pred             HHcCCCceeEEEEeccc
Q psy6405         201 KKLNDGTIQDIKALGYD  217 (548)
Q Consensus       201 rs~~g~~V~LlV~RilD  217 (548)
                      +.. +..+.+++.|..+
T Consensus        90 ~~~-g~~v~l~v~r~~~  105 (111)
T 1uju_A           90 RSV-GDTLTVLVCDGFE  105 (111)
T ss_dssp             SSC-SSEEEECCCCCCC
T ss_pred             HcC-CCeEEEEEEECCC
Confidence            874 6778888877654

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.82  E-value=6e-08  Score=85.41  Aligned_cols=90  Identities=24%  Similarity=0.342  Sum_probs=74.3

Q ss_pred             CeEEEEEec-CcceeEEEecCCCCC-CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC-
Q psy6405         128 PVEITLIKD-GAGLGFSLEGGKDSP-FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN-  204 (548)
Q Consensus       128 ~VtVtV~Rd-GkgLGfSItgg~~s~-lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~-  204 (548)
                      .++|++.|. ..++||+|....... ....+++|..|.++|||+++|.|++||+|++|||+++.++++.++.++++... 
T Consensus        16 ~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   95 (122)
T 1v5q_A           16 TTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSI   95 (122)
T ss_dssp             EEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTT
T ss_pred             eEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            466777776 488999998752111 11236899999999999999999999999999999999999999999999876 


Q ss_pred             CCceeEEEEeccc
Q psy6405         205 DGTIQDIKALGYD  217 (548)
Q Consensus       205 g~~V~LlV~RilD  217 (548)
                      +..+.+.+.|...
T Consensus        96 g~~v~l~v~R~~~  108 (122)
T 1v5q_A           96 TSKVTLEIEFDVA  108 (122)
T ss_dssp             TTCEEEEEEEECC
T ss_pred             CCeEEEEEEECCc
Confidence            7789999998754

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.80  E-value=3.8e-08  Score=85.60  Aligned_cols=83  Identities=27%  Similarity=0.435  Sum_probs=70.3

Q ss_pred             CCeEEEEEecCc-ceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCC-CCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         127 PPVEITLIKDGA-GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQL-KAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       127 ~~VtVtV~RdGk-gLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrL-q~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      ....|.+.|... ++||++....      .+++|..|.++|||+++| | ++||+|++|||+++.++++.++.++++...
T Consensus        25 ~~~~v~l~k~~~~~lG~~i~~~~------~gv~V~~V~~~spA~~aG-ll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   97 (113)
T 1va8_A           25 TVKIVRIEKARDIPLGATVRNEM------DSVIISRIVKGGAAEKSG-LLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH   97 (113)
T ss_dssp             ECEEEEEEECTTCCCCEEEEECS------SSEEEEEECTTSHHHHHT-CCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             ceEEEEEEeCCCCceeEEEEeCC------CCEEEEEeCCCCHHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            446688888766 8999997653      359999999999999999 7 999999999999999999999999998874


Q ss_pred             CCceeEEEEeccc
Q psy6405         205 DGTIQDIKALGYD  217 (548)
Q Consensus       205 g~~V~LlV~RilD  217 (548)
                       ..+.+++.|...
T Consensus        98 -~~v~l~v~r~~~  109 (113)
T 1va8_A           98 -GTLTFVLIPSSG  109 (113)
T ss_dssp             -EEEEEEEECCCC
T ss_pred             -CeEEEEEEECCc
Confidence             578888877543

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=98.79  E-value=4e-08  Score=84.54  Aligned_cols=87  Identities=22%  Similarity=0.315  Sum_probs=70.4

Q ss_pred             CeEEEEEe-cCcceeEEEecCCCCCC---------CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHH
Q psy6405         128 PVEITLIK-DGAGLGFSLEGGKDSPF---------GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAW  197 (548)
Q Consensus       128 ~VtVtV~R-dGkgLGfSItgg~~s~l---------G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~Eav  197 (548)
                      +..+++.| ...++||+|.++.....         ...+++|..|.++|||+++| |+.||+|++|||+++.++++.+++
T Consensus         8 ~~~v~l~~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~   86 (109)
T 1q3o_A            8 EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVV   86 (109)
T ss_dssp             EEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHH
T ss_pred             cEEEEEEECCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHH
Confidence            35677764 56789999987654210         01268999999999999999 999999999999999999999999


Q ss_pred             HHHHHcCCCceeEEEEecc
Q psy6405         198 SLLKKLNDGTIQDIKALGY  216 (548)
Q Consensus       198 elLrs~~g~~V~LlV~Ril  216 (548)
                      ++++.. +..+.+++.|..
T Consensus        87 ~~l~~~-~~~v~l~v~~~~  104 (109)
T 1q3o_A           87 NMIRQG-GNTLMVKVVMVT  104 (109)
T ss_dssp             HHHHHT-TTEEEEEEEEEE
T ss_pred             HHHHhC-CCEEEEEEEECC
Confidence            999886 667888887754

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=4.4e-08  Score=82.99  Aligned_cols=83  Identities=25%  Similarity=0.349  Sum_probs=69.6

Q ss_pred             eEEEEEecCc-ceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCc
Q psy6405         129 VEITLIKDGA-GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGT  207 (548)
Q Consensus       129 VtVtV~RdGk-gLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~  207 (548)
                      ..|++.|... .+||++.......   .+++|..|.++|||+++| |++||+|++|||.++.++++.+++..++.  +..
T Consensus        12 ~~v~l~~~~~~~lG~~~~~~~~~~---~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~--~~~   85 (100)
T 2eeh_A           12 HSVRVEKSPAGRLGFSVRGGSEHG---LGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTS--SSR   85 (100)
T ss_dssp             CCEEECCCSSSSCSEEEECCTTTT---CCEEEEEECTTSHHHHHT-CCSSCEEEEETTEECSSCCHHHHHHHHHS--CSS
T ss_pred             EEEEEEECCCCCccEEEEccccCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcC--CCE
Confidence            5677777654 4999998764321   369999999999999999 99999999999999999988888888876  578


Q ss_pred             eeEEEEeccc
Q psy6405         208 IQDIKALGYD  217 (548)
Q Consensus       208 V~LlV~RilD  217 (548)
                      +.+.+.|...
T Consensus        86 v~l~v~R~g~   95 (100)
T 2eeh_A           86 LHMMVRRMGS   95 (100)
T ss_dssp             EEEEEEECSC
T ss_pred             EEEEEEECCc
Confidence            8999988654

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=98.79  E-value=5.2e-08  Score=83.91  Aligned_cols=86  Identities=29%  Similarity=0.487  Sum_probs=73.0

Q ss_pred             eEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCC-CCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         129 VEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQL-KAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       129 VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrL-q~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      ++|++.|. ..++||++......    .+++|..|.++|||+++| + +.||+|++|||.++.++++.++.++++...+.
T Consensus         3 ~~v~l~~~~~~glG~~~~~~~~~----~~~~V~~v~~~spA~~aG-ll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~   77 (112)
T 1qau_A            3 ISVRLFKRKVGGLGFLVKERVSK----PPVIISDLIRGGAAEQSG-LIQAGDIILAVNDRPLVDLSYDSALEVLRGIASE   77 (112)
T ss_dssp             EEEEEECBTTTBTSEEEEECSSS----SCEEEEEECTTSHHHHHT-CCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSS
T ss_pred             EEEEEEcCCCCceeEEEEecCCC----CCEEEEEeCCCChHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            56777664 57899999876532    369999999999999999 7 99999999999999999999999999987678


Q ss_pred             ceeEEEEeccccC
Q psy6405         207 TIQDIKALGYDLN  219 (548)
Q Consensus       207 ~V~LlV~RilDLr  219 (548)
                      .+.+.+.|.....
T Consensus        78 ~v~l~v~R~g~~~   90 (112)
T 1qau_A           78 THVVLILRGPEGF   90 (112)
T ss_dssp             SEEEEEEECCTTS
T ss_pred             cEEEEEEeCCccc
Confidence            9999999976544

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.79  E-value=2.3e-08  Score=87.88  Aligned_cols=82  Identities=35%  Similarity=0.550  Sum_probs=67.0

Q ss_pred             EEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc---CCCc
Q psy6405         131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL---NDGT  207 (548)
Q Consensus       131 VtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~---~g~~  207 (548)
                      +.+.+. .++||+|.++.....  .+++|.+|.++|||+++|.|++||+|++|||+++.++++.+++++|+..   .+..
T Consensus        22 ~~~~~~-~glG~~i~gg~~~~~--~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~   98 (118)
T 1v6b_A           22 LRIKKE-GSLDLALEGGVDSPV--GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDW   98 (118)
T ss_dssp             EEEESC-SCCCCEEEEBTTSSS--CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSE
T ss_pred             EEECCC-CccCEEEEcccCCCC--CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCe
Confidence            334444 589999987765432  2499999999999999944999999999999999999999999999875   3678


Q ss_pred             eeEEEEec
Q psy6405         208 IQDIKALG  215 (548)
Q Consensus       208 V~LlV~Ri  215 (548)
                      +.+.+.|.
T Consensus        99 v~l~v~r~  106 (118)
T 1v6b_A           99 IDLVVAVC  106 (118)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEeC
Confidence            88888874

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=98.78  E-value=2.2e-08  Score=89.03  Aligned_cols=91  Identities=21%  Similarity=0.304  Sum_probs=74.1

Q ss_pred             CCCCeEEEEEec--CcceeEEEecCCCC---CCC---CCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHH
Q psy6405         125 RGPPVEITLIKD--GAGLGFSLEGGKDS---PFG---DQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEA  196 (548)
Q Consensus       125 ~g~~VtVtV~Rd--GkgLGfSItgg~~s---~lG---~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~Ea  196 (548)
                      +.....|++.|.  +.++||+|.++...   ..+   ..+++|..|.++|||+++|.|++||+|++|||.++.++++.++
T Consensus        27 ~~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~  106 (128)
T 1nf3_C           27 PETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQV  106 (128)
T ss_dssp             CTTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHH
T ss_pred             CCccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence            455678888887  47899999865421   111   1269999999999999999889999999999999999999999


Q ss_pred             HHHHHHcCCCceeEEEEecc
Q psy6405         197 WSLLKKLNDGTIQDIKALGY  216 (548)
Q Consensus       197 velLrs~~g~~V~LlV~Ril  216 (548)
                      +.+++.. +..+.+.+.|..
T Consensus       107 ~~~l~~~-~~~v~l~v~r~~  125 (128)
T 1nf3_C          107 TDMMIAN-SRNLIITVRPAN  125 (128)
T ss_dssp             HHHHHHT-TTSEEEEEECCC
T ss_pred             HHHHHcC-CCeEEEEEEECC
Confidence            9999976 567888888754

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=98.78  E-value=4.9e-08  Score=86.64  Aligned_cols=90  Identities=22%  Similarity=0.339  Sum_probs=72.2

Q ss_pred             CCCeEEEEEec-CcceeEEEecCCCCCC------CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy6405         126 GPPVEITLIKD-GAGLGFSLEGGKDSPF------GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWS  198 (548)
Q Consensus       126 g~~VtVtV~Rd-GkgLGfSItgg~~s~l------G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~Eave  198 (548)
                      ..+..+++.|. ...+||++.+......      ...+++|..|.++|||+++|+|++||+|++|||+++.++++.++++
T Consensus        23 ~~p~~v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~  102 (123)
T 2iwq_A           23 MQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVE  102 (123)
T ss_dssp             CCCEEEEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             CCCEEEEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            34577888775 4679999976543210      1247999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCceeEEEEecc
Q psy6405         199 LLKKLNDGTIQDIKALGY  216 (548)
Q Consensus       199 lLrs~~g~~V~LlV~Ril  216 (548)
                      +++.. +..+.+.+.|..
T Consensus       103 ~l~~~-~~~v~l~v~r~~  119 (123)
T 2iwq_A          103 AIRKA-GNPVVFMVQSII  119 (123)
T ss_dssp             HHHHC-CSSEEEEEECCC
T ss_pred             HHHcC-CCeEEEEEEECC
Confidence            99987 458888888754

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.78  E-value=8.8e-09  Score=87.22  Aligned_cols=86  Identities=27%  Similarity=0.460  Sum_probs=72.2

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      ..+.+++.+...++||++..+....   .+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++.. +.
T Consensus        11 ~~~~v~l~~~~~g~G~~~~~~~~~~---~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g~   86 (103)
T 1wfv_A           11 DYFTVDMEKGAKGFGFSIRGGREYK---MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSG-GR   86 (103)
T ss_dssp             CCEECCEECCTTSSSBCCEEETTTT---EEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHH-CS
T ss_pred             eEEEEEEecCCCcCCEEEeccccCC---CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CC
Confidence            3466777787788999998765431   2589999999999999999999999999999999999999999999854 67


Q ss_pred             ceeEEEEecc
Q psy6405         207 TIQDIKALGY  216 (548)
Q Consensus       207 ~V~LlV~Ril  216 (548)
                      .+.+.+.|..
T Consensus        87 ~v~l~v~R~~   96 (103)
T 1wfv_A           87 RVRLLLKRGT   96 (103)
T ss_dssp             EECEEEECTT
T ss_pred             eEEEEEEECC
Confidence            8889888754

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=98.78  E-value=4.5e-08  Score=83.38  Aligned_cols=89  Identities=20%  Similarity=0.263  Sum_probs=69.8

Q ss_pred             CCCeEEEEEe-cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-
Q psy6405         126 GPPVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-  203 (548)
Q Consensus       126 g~~VtVtV~R-dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-  203 (548)
                      .....|.+.| .+.++||++...... ....+++|..|.++|||++++.|++||+|++|||.++.+.++.++.++|+.. 
T Consensus         8 ~~~~~v~l~k~~g~~lG~~i~~~~~~-~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~   86 (101)
T 2yt7_A            8 DNCREVHLEKRRGEGLGVALVESGWG-SLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETK   86 (101)
T ss_dssp             CCCEEEEEECCTTCCCCEEEEECCCS-SSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTT
T ss_pred             CceEEEEEEeCCCCccCEEEEeCCCC-CCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            3446777776 447899999753211 1123589999999999999555999999999999999999999999999985 


Q ss_pred             CCCceeEEEEec
Q psy6405         204 NDGTIQDIKALG  215 (548)
Q Consensus       204 ~g~~V~LlV~Ri  215 (548)
                      .+..+.+.+.|.
T Consensus        87 ~g~~v~l~v~R~   98 (101)
T 2yt7_A           87 SQTSVTLSIVHC   98 (101)
T ss_dssp             TSSEEEEEECCC
T ss_pred             CCCeEEEEEEeC
Confidence            567888888663

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=98.78  E-value=2.8e-08  Score=84.48  Aligned_cols=86  Identities=31%  Similarity=0.473  Sum_probs=71.0

Q ss_pred             CCCeEEEEEecCcceeEEEecCCCC---CC--CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDS---PF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLL  200 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s---~l--G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelL  200 (548)
                      ...+.|++.|.+ ++||++.++...   +.  ...+++|..|.++|||++ | |++||+|++|||.++.++++.+++..+
T Consensus        10 ~~~~~v~l~~~~-~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~   86 (103)
T 1n7t_A           10 KQEIRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLL   86 (103)
T ss_dssp             CCCEEEEEECSS-CCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-S-CCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred             cEEEEEEEccCC-CccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-C-CCCCCEEEEECCEECCCCCHHHHHHHh
Confidence            455778888765 899999986531   11  234799999999999999 8 999999999999999999999999999


Q ss_pred             HHcCCCceeEEEEec
Q psy6405         201 KKLNDGTIQDIKALG  215 (548)
Q Consensus       201 rs~~g~~V~LlV~Ri  215 (548)
                      +.. +..+.+++.|.
T Consensus        87 ~~~-g~~v~l~v~R~  100 (103)
T 1n7t_A           87 KTF-QNTVELIIVRE  100 (103)
T ss_dssp             HHC-CSEEEEEEECC
T ss_pred             hcC-CCeEEEEEEec
Confidence            865 67888888875

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=98.78  E-value=3e-08  Score=87.41  Aligned_cols=88  Identities=24%  Similarity=0.240  Sum_probs=75.2

Q ss_pred             CCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      -.+..+++.|...++||++......    .+++|..|.++|||+++| |+.||+|++|||.++.++++.++..+++...+
T Consensus         8 ~~~r~v~l~~~~~g~G~~l~~~~~~----~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   82 (128)
T 2kjd_A            8 LRPRLCTMKKGPSGYGFNLHSDKSK----PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGD   82 (128)
T ss_dssp             CCCEEEEEECCSSSCCEEEEECSSS----CSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTCS
T ss_pred             CCcEEEEEecCCCcccEEEEecCCC----CCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            3457788899889999999876532    369999999999999999 99999999999999999999999999998766


Q ss_pred             CceeEEEEecccc
Q psy6405         206 GTIQDIKALGYDL  218 (548)
Q Consensus       206 ~~V~LlV~RilDL  218 (548)
                      ..+.+.+.|....
T Consensus        83 ~~~~l~v~R~g~~   95 (128)
T 2kjd_A           83 ETKLLVVDRETDE   95 (128)
T ss_dssp             EEEEEEECHHHHH
T ss_pred             CEEEEEEEeCCcc
Confidence            6777888886543

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.77  E-value=2.6e-08  Score=88.15  Aligned_cols=91  Identities=26%  Similarity=0.329  Sum_probs=68.4

Q ss_pred             CCCCeEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         125 RGPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       125 ~g~~VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      .+...+++|... ...+||++.......   .+++|..|.++|||+++| |++||+|++|||.++.++++.++++.++..
T Consensus        18 ~g~~~~v~v~~~~~~~lG~~~~~~~~~~---~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   93 (128)
T 1uf1_A           18 GGDEKKVNLVLGDGRSLGLTIRGGAEYG---LGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSS   93 (128)
T ss_dssp             CSSEEEEEEECCSSCCCCEEEECCTTTT---CCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTC
T ss_pred             CCcEEEEEEEECCCCccCEEEECcccCC---CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            344455555532 245777776643221   368999999999999999 999999999999999999987888877663


Q ss_pred             CCCceeEEEEeccccCCC
Q psy6405         204 NDGTIQDIKALGYDLNSL  221 (548)
Q Consensus       204 ~g~~V~LlV~RilDLr~~  221 (548)
                        ..+.+.+.|.......
T Consensus        94 --~~v~l~v~R~g~~~~~  109 (128)
T 1uf1_A           94 --RHLILTVKDVGRLPHA  109 (128)
T ss_dssp             --SEEEEEEECCSCCSSC
T ss_pred             --CeEEEEEEECCccccc
Confidence              5888999887665443

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.77  E-value=3.9e-08  Score=85.61  Aligned_cols=87  Identities=22%  Similarity=0.380  Sum_probs=71.4

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      ..+.|.+.+....+|+++......     +++|..|.++|||+++| |++||+|++|||+++.++++.++...++. .+.
T Consensus        19 ~~~~v~l~~~~~~lG~~~~~~~~~-----gv~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~-~g~   91 (117)
T 1uit_A           19 EPRHVKVQKGSEPLGISIVSGEKG-----GIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQ-QCD   91 (117)
T ss_dssp             CCEEEEEECSSCCCCEEEEECTTS-----CEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTS-CCS
T ss_pred             CCEEEEEEeCCCCccEEEEccCCC-----CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc-CCC
Confidence            445788888888899999876433     69999999999999999 99999999999999999998776655543 467


Q ss_pred             ceeEEEEeccccCC
Q psy6405         207 TIQDIKALGYDLNS  220 (548)
Q Consensus       207 ~V~LlV~RilDLr~  220 (548)
                      .+.+.+.|..+...
T Consensus        92 ~v~l~v~r~~~~~~  105 (117)
T 1uit_A           92 TITILAQYNPHVHQ  105 (117)
T ss_dssp             EEEEEECCCSCCCC
T ss_pred             eEEEEEEECCchhh
Confidence            88999988765443

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=98.77  E-value=2.2e-08  Score=85.41  Aligned_cols=82  Identities=24%  Similarity=0.406  Sum_probs=62.2

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCC------CCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHH
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSD------YESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAI  122 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d------~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~  122 (548)
                      ..++.+.+.+. ...+|||++.+...      ....+++|..|.++|||+++| |++||+|++|||+++.++++.+++..
T Consensus        14 ~~~~~v~l~~~-~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~   91 (104)
T 2z17_A           14 SQRKLVTVEKQ-DNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDL   91 (104)
T ss_dssp             SCCCEEEEECC-TTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCHHHHHHH
T ss_pred             CcceEEEEEeC-CCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHH
Confidence            34566778886 36789999997321      113589999999999999999 99999999999999998888776655


Q ss_pred             hhC-CCCeEEE
Q psy6405         123 LKR-GPPVEIT  132 (548)
Q Consensus       123 lk~-g~~VtVt  132 (548)
                      ++. +..+.|+
T Consensus        92 l~~~~~~v~l~  102 (104)
T 2z17_A           92 IRSSGNLLTIE  102 (104)
T ss_dssp             HHHTTTEEEEE
T ss_pred             HHhCCCcEEEE
Confidence            543 2344444

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.77  E-value=1.4e-08  Score=85.11  Aligned_cols=85  Identities=27%  Similarity=0.356  Sum_probs=69.5

Q ss_pred             CeEEEEEe-cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         128 PVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       128 ~VtVtV~R-dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      .+.+++.+ ...++||++..+....   .+++|..|.++|||+++| |++||+|++|||.++.++++.++.++++... .
T Consensus         5 ~~~~~~~~~~~~~lG~~l~~g~~~~---~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~   79 (94)
T 1vb7_A            5 SSGLTVDVAGPAPWGFRISGGRDFH---TPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSA-S   79 (94)
T ss_dssp             CCCEEEEECSSSCCSBCCEEETTTT---EEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCC-S
T ss_pred             cEEEEEEecCCCCccEEEecccCCC---CCeEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-C
Confidence            44555554 4567999998754331   358999999999999999 9999999999999999999999999999875 7


Q ss_pred             ceeEEEEeccc
Q psy6405         207 TIQDIKALGYD  217 (548)
Q Consensus       207 ~V~LlV~RilD  217 (548)
                      .+.+.+.|...
T Consensus        80 ~v~l~v~R~g~   90 (94)
T 1vb7_A           80 PLRLQLDRSSG   90 (94)
T ss_dssp             SEEEEEECCCC
T ss_pred             cEEEEEEECCc
Confidence            88999988643

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=98.76  E-value=2.4e-08  Score=83.21  Aligned_cols=76  Identities=32%  Similarity=0.441  Sum_probs=63.3

Q ss_pred             EEEEEe--cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCc
Q psy6405         130 EITLIK--DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGT  207 (548)
Q Consensus       130 tVtV~R--dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~  207 (548)
                      .+++.+  ....+||++..         +++|..|.++|||+++|+|+.||+|++|||+++.++++.++++++++. +..
T Consensus         3 ~v~l~~~~~~~~~G~~~~~---------gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~-~~~   72 (88)
T 3e17_A            3 GVLLMKSRANEEYGLRLGS---------QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKS-RGK   72 (88)
T ss_dssp             EEEEECBTTBCCCCEEEEE---------EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTE
T ss_pred             EEEEEeCCCCCCCCEEEeC---------CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCe
Confidence            455554  34568888864         499999999999999999999999999999999999999999999987 457


Q ss_pred             eeEEEEec
Q psy6405         208 IQDIKALG  215 (548)
Q Consensus       208 V~LlV~Ri  215 (548)
                      +.+++.+.
T Consensus        73 v~L~v~~~   80 (88)
T 3e17_A           73 LQLVVLRD   80 (88)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEeCC
Confidence            77777553

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=98.76  E-value=4.4e-08  Score=88.82  Aligned_cols=91  Identities=29%  Similarity=0.398  Sum_probs=72.1

Q ss_pred             CeEEEEEecCc----ceeEEEecCCCC-----CC----CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHH
Q psy6405         128 PVEITLIKDGA----GLGFSLEGGKDS-----PF----GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRI  194 (548)
Q Consensus       128 ~VtVtV~RdGk----gLGfSItgg~~s-----~l----G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~  194 (548)
                      ...|++.+.+.    .+||++.++...     .+    ...+++|..|.++|||+++| |++||+|++|||.++.++++.
T Consensus        24 ~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~  102 (139)
T 2vz5_A           24 VQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHD  102 (139)
T ss_dssp             EEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHH
T ss_pred             eEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEEcCCCCHH
Confidence            35677776543    699999765431     11    12589999999999999999 999999999999999999999


Q ss_pred             HHHHHHHHcCCCceeEEEEeccccC
Q psy6405         195 EAWSLLKKLNDGTIQDIKALGYDLN  219 (548)
Q Consensus       195 EavelLrs~~g~~V~LlV~RilDLr  219 (548)
                      ++.++++...+..+.+.+.|.....
T Consensus       103 ~~~~~l~~~~g~~v~l~v~R~g~~~  127 (139)
T 2vz5_A          103 QARKRLTKRSEEVVRLLVTRQSLQK  127 (139)
T ss_dssp             HHHHHHCCTTCSEEEEEEEECC---
T ss_pred             HHHHHHHhCCCCEEEEEEEECCEEE
Confidence            9999998866778999999876533

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=98.75  E-value=2.3e-08  Score=104.38  Aligned_cols=180  Identities=17%  Similarity=0.223  Sum_probs=112.3

Q ss_pred             cccccCCCccCCCCCCCCeEEEEEeeC----------CCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCE
Q psy6405          33 QSLDEGGCPSLLIPGTSEVSVVVLHRD----------LPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDR  102 (548)
Q Consensus        33 ~~~~~dgai~gml~~~~d~~tV~L~Kd----------~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDr  102 (548)
                      ...++..++.+|+....++++.++..+          ..+.|+|+.+.... ....+++|..|.++|||+++| |++||+
T Consensus        45 ~~~~~~~~i~~ml~~L~D~hs~~~~~~~~~~~~~~~~g~~~giG~~~~~~~-~~~~~~~V~~v~~~spA~~aG-l~~GD~  122 (388)
T 1fc6_A           45 RRAQTYDAIRKMLAVLDDPFTRFLEPSRLAALRRGTAGSVTGVGLEITYDG-GSGKDVVVLTPAPGGPAEKAG-ARAGDV  122 (388)
T ss_dssp             SHHHHHHHHHHHHHTTCCTTCEEECHHHHHHHHHCSSSSCBBCSEEEEECT-TCSSCEEEEEECTTSHHHHTT-CCTTCE
T ss_pred             CHHHHHHHHHHHHHhcCCCcceecCHHHHHHHHHhhcCceEEEEEEEEEee-cCCCcEEEEEeCCCChHHHcC-CCCCCE
Confidence            344555677888887888888776432          23568999987531 113579999999999999999 999999


Q ss_pred             EEEECCeeccCccHHHHHHHhh--CCCCeEEEEEecCc---ceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCC-CC
Q psy6405         103 ILSINGKSMKGLTHKESLAILK--RGPPVEITLIKDGA---GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQL-KA  176 (548)
Q Consensus       103 ILaINGv~V~~~s~~~aV~~lk--~g~~VtVtV~RdGk---gLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrL-q~  176 (548)
                      |++|||+++.+++..++...++  .+..+.|+|.|.+.   .+.++|+...-.   ..++....+..-.  ...-.. ..
T Consensus       123 I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~~~~~~~l~r~~i~---~~~v~~~~~~~~~--~~~~~~~~~  197 (388)
T 1fc6_A          123 IVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTLQLTRQKVT---INPVTFTTCSNVA--AAALPPGAA  197 (388)
T ss_dssp             EEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTEEEEEEEEEEECBCCC---CCCEEEEEECSCC--GGGSCTTCS
T ss_pred             EEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCCCcceEEEEEEEceee---cCceeeeeecccc--ccccccccC
Confidence            9999999999987665554443  57789999999887   677777765422   1123322221000  000001 12


Q ss_pred             CCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccccCCCC
Q psy6405         177 GDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDLNSLG  222 (548)
Q Consensus       177 GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDLr~~~  222 (548)
                      ++.|..|.-.++..-+..++.+.++......   +...++|+|...
T Consensus       198 ~~~igYi~i~~F~~~~~~~~~~~l~~l~~~~---~~~lIlDLR~N~  240 (388)
T 1fc6_A          198 KQQLGYVRLATFNSNTTAAAQQAFTELSKQG---VAGLVLDIRNNG  240 (388)
T ss_dssp             SSCEEEEEECCBSTTHHHHHHHHHHHHHHTT---CSEEEEECTTCC
T ss_pred             CCCEEEEEeCccCcchHHHHHHHHHHHHhCC---CCeEEEEcCCCC
Confidence            3455555444444444456666665432211   234566777553

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=98.75  E-value=3.3e-08  Score=83.47  Aligned_cols=82  Identities=22%  Similarity=0.339  Sum_probs=68.6

Q ss_pred             CCeEEEEEe-cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         127 PPVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       127 ~~VtVtV~R-dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      ..+++++.+ ...++||++....      .+++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++.. +
T Consensus         8 ~~~~v~l~~~~~~glG~~~~~~~------~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~-~   80 (96)
T 2qkv_A            8 EKFNVDLMKKAGKELGLSLSPNE------IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGA-N   80 (96)
T ss_dssp             CCEEEEEECBTTBCCCEEEEECS------SSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTC-S
T ss_pred             ceEEEEEEeCCCCCccEEEEeCC------CcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-C
Confidence            446777764 6678999987622      3699999999999999999999999999999999999998988888876 4


Q ss_pred             CceeEEEEec
Q psy6405         206 GTIQDIKALG  215 (548)
Q Consensus       206 ~~V~LlV~Ri  215 (548)
                      ..+.+.+.|.
T Consensus        81 ~~v~l~v~R~   90 (96)
T 2qkv_A           81 GKVSMEVTRP   90 (96)
T ss_dssp             SEEEEEEECC
T ss_pred             CcEEEEEEeC
Confidence            5788888774

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=98.75  E-value=4.5e-08  Score=78.70  Aligned_cols=75  Identities=23%  Similarity=0.461  Sum_probs=57.5

Q ss_pred             EEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCCeEEEE
Q psy6405          55 VLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPPVEITL  133 (548)
Q Consensus        55 ~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~VtVtV  133 (548)
                      .+.+. ....|||.+.       .+++|..|.++|||+++|+|++||+|++|||.++.+++..++...+. .+..+.++|
T Consensus         6 ~~~~~-~~~~~g~~~~-------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v   77 (81)
T 2rcz_A            6 LVKSR-KNEEYGLRLA-------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVV   77 (81)
T ss_dssp             EECCS-TTCCCCEEEE-------EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEE
T ss_pred             EEECC-CCCCCCEEEe-------CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEE
Confidence            34444 4678898887       36899999999999999999999999999999999777666554443 334677888


Q ss_pred             EecC
Q psy6405         134 IKDG  137 (548)
Q Consensus       134 ~RdG  137 (548)
                      .|++
T Consensus        78 ~R~g   81 (81)
T 2rcz_A           78 QRDE   81 (81)
T ss_dssp             EC--
T ss_pred             EeCC
Confidence            7753

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=98.23  E-value=9.5e-10  Score=96.35  Aligned_cols=82  Identities=32%  Similarity=0.618  Sum_probs=64.5

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhh-cCCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADR-DGRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaq-AGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      ..+++|.+.|.. ..+|||++.++.+. ..+++|..|.++|||++ +| |++||+|++|||+++.+++..+++..++ .+
T Consensus        26 ~~~~~v~l~k~~-~~glG~~l~~g~~~-~~gv~V~~V~~~spA~~~aG-L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~  102 (112)
T 2lob_A           26 QGIRKVLLLKED-HEGLGISITGGKEH-GVPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQR  102 (112)
Confidence            456788888873 78999999987653 24789999999999999 88 9999999999999998887777665543 23


Q ss_pred             CCeEEEE
Q psy6405         127 PPVEITL  133 (548)
Q Consensus       127 ~~VtVtV  133 (548)
                      ..+.++|
T Consensus       103 ~~v~l~V  109 (112)
T 2lob_A          103 GEIEFEV  109 (112)
Confidence            3455544

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=98.75  E-value=9.4e-08  Score=83.66  Aligned_cols=87  Identities=24%  Similarity=0.395  Sum_probs=70.5

Q ss_pred             hCCCCeEEEEEecCcc-eeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHH
Q psy6405         124 KRGPPVEITLIKDGAG-LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK  202 (548)
Q Consensus       124 k~g~~VtVtV~RdGkg-LGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs  202 (548)
                      ....+..|++.|...+ +||++..+....   .+++|..|.++|||+++|+|++||+|++|||.++.+.+..++.++++.
T Consensus        21 q~~~~~~V~l~~~~~~~lG~~l~~~~~~~---~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~   97 (114)
T 2gzv_A           21 QSMVPGKVTLQKDAQNLIGISIGGGAQYC---PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQE   97 (114)
T ss_dssp             -CCCCEEEEEECCTTSCCSEEEEECCC-----CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             ccCCCEEEEEEECCCCcEeEEEEeCCCCC---CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            3456678888887654 999998765431   369999999999999999999999999999999988889999999987


Q ss_pred             cCCCceeEEEEe
Q psy6405         203 LNDGTIQDIKAL  214 (548)
Q Consensus       203 ~~g~~V~LlV~R  214 (548)
                      .. ..+.+.+.+
T Consensus        98 ~~-~~v~l~v~~  108 (114)
T 2gzv_A           98 VK-GEVTIHYNK  108 (114)
T ss_dssp             CC-SEEEEEEEC
T ss_pred             CC-CeEEEEEEe
Confidence            64 457776654

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=98.75  E-value=2.5e-08  Score=86.39  Aligned_cols=80  Identities=23%  Similarity=0.350  Sum_probs=67.6

Q ss_pred             eEEEEE-ecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCc
Q psy6405         129 VEITLI-KDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGT  207 (548)
Q Consensus       129 VtVtV~-RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~  207 (548)
                      ++|++. +.+.++|+++....      .+++|..|.++|||+++|+|++||+|++|||+++.+.++.++..+++.. +..
T Consensus         4 ~~v~L~k~~~~glG~~i~~~~------~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~-~~~   76 (106)
T 2la8_A            4 FNVDLMKKAGKELGLSLSPNE------IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGA-NGK   76 (106)
T ss_dssp             EEEEECCBSSSTTCCEEEECS------SSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSC-BSC
T ss_pred             EEEEEEeCCCCccCEEEEeCC------CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCe
Confidence            456676 46678999887622      3699999999999999999999999999999999999999988888876 457


Q ss_pred             eeEEEEec
Q psy6405         208 IQDIKALG  215 (548)
Q Consensus       208 V~LlV~Ri  215 (548)
                      +.+.+.|.
T Consensus        77 v~l~v~R~   84 (106)
T 2la8_A           77 VSMEVTRP   84 (106)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEeC
Confidence            88888885

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.74  E-value=1.9e-08  Score=87.99  Aligned_cols=84  Identities=27%  Similarity=0.369  Sum_probs=71.2

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      .+..|.+.|.+.++||++.+.       .+++|..|.+++||+++| |+.||+|++|||+++..+++.++.++++...+.
T Consensus        15 ~~r~v~l~~~~~~~G~~l~~~-------~~v~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~   86 (111)
T 1vae_A           15 PPRGIHFTVEEGDLGFTLRGN-------TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGE   86 (111)
T ss_dssp             CCCCCCEECCSSCCSCCEESS-------SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTS
T ss_pred             CCeEEEEEcCCCcccEEEeCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc
Confidence            345677888888899988644       258899999999999999 999999999999999988899999999988666


Q ss_pred             ceeEEEEecccc
Q psy6405         207 TIQDIKALGYDL  218 (548)
Q Consensus       207 ~V~LlV~RilDL  218 (548)
                      .+.+.+.+..+.
T Consensus        87 ~v~l~V~~~~~~   98 (111)
T 1vae_A           87 EVEMKVVSLLDS   98 (111)
T ss_dssp             EECEEEECEECC
T ss_pred             eEEEEEEecCCC
Confidence            788888876543

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.74  E-value=6.3e-08  Score=82.06  Aligned_cols=83  Identities=27%  Similarity=0.363  Sum_probs=70.2

Q ss_pred             CCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       125 ~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      ....+.+++.+...++||+|....      .+++|..|.++  |+++| |++||+|++|||+++.++++.+++++|+..+
T Consensus         8 ~~~~~~v~l~~~~~g~G~~i~~~~------~Gv~V~~v~~~--a~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   78 (96)
T 1ujv_A            8 QAELMTLTIVKGAQGFGFTIADSP------TGQRVKQILDI--QGCPG-LCEGDLIVEINQQNVQNLSHTEVVDILKDCP   78 (96)
T ss_dssp             CCCCEEEEEECCSSSSSEEEEEET------TEEEEEEESCG--GGSTT-CCSSCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             CceEEEEEEEeCCCceeEEEEcCC------CCEEEEEEecc--cccCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            345688889998899999997432      24889999873  77888 9999999999999999999999999999975


Q ss_pred             -CCceeEEEEecc
Q psy6405         205 -DGTIQDIKALGY  216 (548)
Q Consensus       205 -g~~V~LlV~Ril  216 (548)
                       +..+.+++.|..
T Consensus        79 ~g~~v~l~v~R~g   91 (96)
T 1ujv_A           79 IGSETSLIIHRGS   91 (96)
T ss_dssp             TTSEEEEEEECCS
T ss_pred             CCCEEEEEEEECC
Confidence             788999998864

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.74  E-value=2e-08  Score=85.34  Aligned_cols=80  Identities=25%  Similarity=0.372  Sum_probs=67.9

Q ss_pred             CeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCc
Q psy6405         128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGT  207 (548)
Q Consensus       128 ~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~  207 (548)
                      .+.+++.+...++||.+...       .+++|..|.++|||+++| |++||+|++|||+++.++++.++.++++.. +..
T Consensus        16 ~~~v~l~~~~~g~G~~~~~~-------~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~   86 (100)
T 1whd_A           16 KLQITIRRGKDGFGFTICCD-------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSC-PSE   86 (100)
T ss_dssp             EEEEEEECCSSSSSCBCCCS-------SSCBCCBCCTTSHHHHHT-CCSSCEEEEETTEECTTCCHHHHHHHHHHC-SSE
T ss_pred             eEEEEEECCCCeeeEEEeCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCe
Confidence            36677777777888888654       258899999999999999 999999999999999999999999999886 445


Q ss_pred             eeEEEEecc
Q psy6405         208 IQDIKALGY  216 (548)
Q Consensus       208 V~LlV~Ril  216 (548)
                      +.+++.|..
T Consensus        87 v~l~v~R~~   95 (100)
T 1whd_A           87 IILLVWRVS   95 (100)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEECC
Confidence            888887753

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.74  E-value=3.9e-09  Score=103.00  Aligned_cols=94  Identities=17%  Similarity=0.331  Sum_probs=74.5

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-C
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-G  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-g  126 (548)
                      ...++.|.+.+.  ..+|||.+.++.+  ..+++|..|.++|||+++| |++||+|++|||++|.+++..+++..+.. +
T Consensus         7 ~~~~r~v~l~k~--~~glG~~l~~~~~--~~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g   81 (216)
T 2krg_A            7 MLRPRLCTMKKG--PSGYGFNLHSDKS--KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG   81 (216)
T ss_dssp             TCCCEEEEEECC--SSSSCEEECCCSS--SCSCBEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCTHHHHHHHHHHC
T ss_pred             ccceEEEEEEeC--CCCceEEEEecCC--CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcC
Confidence            456789999987  5799999987653  2479999999999999999 99999999999999997766665544432 6


Q ss_pred             CCe-EEEEEecCcce--eEEEec
Q psy6405         127 PPV-EITLIKDGAGL--GFSLEG  146 (548)
Q Consensus       127 ~~V-tVtV~RdGkgL--GfSItg  146 (548)
                      ..+ .++|.|++..+  .+.++.
T Consensus        82 ~~v~~l~V~R~g~~~~~~v~v~p  104 (216)
T 2krg_A           82 DETKLLVVDRETDEFFKKCRVIP  104 (216)
T ss_dssp             SEEEEEECCHHHHHHHHHHTCCC
T ss_pred             CeEEEEEEEECCEEEEEEEEEEE
Confidence            677 88888887665  455543

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.73  E-value=1.7e-08  Score=86.75  Aligned_cols=86  Identities=31%  Similarity=0.527  Sum_probs=73.1

Q ss_pred             CCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      ..+..|++.|...++||++......    .+++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++.. +
T Consensus        14 ~~~~~v~l~k~~~glG~~l~~~~~~----~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~-~   88 (113)
T 1um7_A           14 REPRKIILHKGSTGLGFNIVGGEDG----EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRA-G   88 (113)
T ss_dssp             CSEEEEEEECCSSCSSBCCBCCSTT----CCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSC-C
T ss_pred             CceEEEEEEECCCcccEEEEeccCC----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-C
Confidence            3457788999888999999876532    3689999999999999998999999999999999999999999888864 6


Q ss_pred             CceeEEEEecc
Q psy6405         206 GTIQDIKALGY  216 (548)
Q Consensus       206 ~~V~LlV~Ril  216 (548)
                      ..+.+++.|..
T Consensus        89 ~~v~l~v~r~~   99 (113)
T 1um7_A           89 QSVTIVAQYRP   99 (113)
T ss_dssp             SEEEEEEECCH
T ss_pred             CcEEEEEEECc
Confidence            77888887753

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.72  E-value=2.4e-08  Score=88.36  Aligned_cols=67  Identities=24%  Similarity=0.422  Sum_probs=54.8

Q ss_pred             CCCeEEEEEcC--CChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-CCCeEEEEEecCcceeEEE
Q psy6405          77 SKEITVHKVIS--GTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKDGAGLGFSL  144 (548)
Q Consensus        77 ~~gVvVs~V~p--GSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-g~~VtVtV~RdGkgLGfSI  144 (548)
                      ..+++|..|.+  +|||+++| |++||+|++|||+++.++++.++...+.. +..+.|+|.|++....+..
T Consensus        43 ~~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng~~v~~~~~~dl~~~l~~~g~~v~l~v~R~g~~~~~~~  112 (118)
T 2yub_A           43 ATTVQVKEVNRMHISPNNRNA-IHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDPVPQRLDQ  112 (118)
T ss_dssp             CCEEEEEECCTTTSCTTHHHH-CCTTCCEEEESSSBTTTSCHHHHHHHHHCCSSCEEEEEEECSSCCCCCS
T ss_pred             CCcEEEEEecCCCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHhCCCEEEEEEEECCEEEeeec
Confidence            35899999999  99999999 99999999999999999965555444433 6789999999887654444

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.70  E-value=6.1e-08  Score=81.27  Aligned_cols=81  Identities=25%  Similarity=0.357  Sum_probs=67.2

Q ss_pred             CCeEEEEEe-cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         127 PPVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       127 ~~VtVtV~R-dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      ....|.+.| .+..+||++....      .+++|..|.++|||+++|.|++||+|++|||.++ +.++.++.++++.. +
T Consensus         6 ~~r~v~l~k~~~~~lG~~i~~~~------~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~-~   77 (91)
T 2e7k_A            6 SGRMVGIRKTAGEHLGVTFRVEG------GELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNA-S   77 (91)
T ss_dssp             CSCBCCBCCCTTCCCCEEEEESS------SSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTC-C
T ss_pred             CcEEEEEEECCCCcEeEEEEecC------CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcC-C
Confidence            345566655 5678999998732      3699999999999999877999999999999999 88899999999986 5


Q ss_pred             CceeEEEEec
Q psy6405         206 GTIQDIKALG  215 (548)
Q Consensus       206 ~~V~LlV~Ri  215 (548)
                      ..+.+.+.|.
T Consensus        78 ~~v~l~v~~~   87 (91)
T 2e7k_A           78 GSVILKILSG   87 (91)
T ss_dssp             SSBCEEEECC
T ss_pred             CeEEEEEEEC
Confidence            6788888764

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=98.69  E-value=5.9e-08  Score=84.26  Aligned_cols=85  Identities=32%  Similarity=0.394  Sum_probs=71.7

Q ss_pred             CCeEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         127 PPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       127 ~~VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      ++.++.+.+. ...+||.+......    .+++|..|.++|||+++| |++||+|++|||.++.++++.++.++++.. +
T Consensus        13 dp~~~~l~~~~~~~~G~~l~~~~~~----~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g   86 (114)
T 2edz_A           13 NPRECKLSKQEGQNYGFFLRIEKDT----DGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKS-G   86 (114)
T ss_dssp             CCEEEEEECCTTCCCSCEEECCTTC----CSCEEECCCTTCTTGGGT-CCTTCEEEEESSSBCSSSCHHHHHHHHHHT-C
T ss_pred             CCEEEEEeCCCCCcccEEEEEecCC----CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-C
Confidence            5667777764 56788888764332    369999999999999999 999999999999999999999999999886 7


Q ss_pred             CceeEEEEeccc
Q psy6405         206 GTIQDIKALGYD  217 (548)
Q Consensus       206 ~~V~LlV~RilD  217 (548)
                      ..+.+.+.|...
T Consensus        87 ~~v~l~v~R~~~   98 (114)
T 2edz_A           87 NSVTLLVLDGDS   98 (114)
T ss_dssp             SEEEEEEECHHH
T ss_pred             CEEEEEEEECCc
Confidence            889999988654

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=98.69  E-value=9.3e-08  Score=82.16  Aligned_cols=82  Identities=30%  Similarity=0.375  Sum_probs=64.1

Q ss_pred             CeEEEEEecCc---ceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         128 PVEITLIKDGA---GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       128 ~VtVtV~RdGk---gLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      ...|.+.|...   ++||++......  +..+++|..|.++|||+++| |+.||+|++|||.++.++++.++.+++++  
T Consensus         7 ~~~v~i~k~~~~~~~~Gf~v~~~~~~--~~~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~l~~~l~~--   81 (94)
T 3kzd_A            7 THSIHIEKSDTAADTYGFSLSSVEED--GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQ--   81 (94)
T ss_dssp             EEEEEEEC------CCSEEEEEECSS--SSCEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHS--
T ss_pred             eeEEEEEeCCCCcCCcCEEEEecCCC--CcCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC--
Confidence            35677777653   699999764322  22469999999999999999 99999999999999999999999998874  


Q ss_pred             CCceeEEEEec
Q psy6405         205 DGTIQDIKALG  215 (548)
Q Consensus       205 g~~V~LlV~Ri  215 (548)
                       ..+.+++...
T Consensus        82 -~~l~ltV~~~   91 (94)
T 3kzd_A           82 -PSLGLLVRTY   91 (94)
T ss_dssp             -SEEEEEEEEC
T ss_pred             -CeEEEEEEec
Confidence             4567776653

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.68  E-value=9.3e-09  Score=89.98  Aligned_cols=80  Identities=30%  Similarity=0.406  Sum_probs=63.3

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh--CC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK--RG  126 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk--~g  126 (548)
                      ..+++|.+.+.  ..+|||.+.+.     .+++|..|.++|||+++| |++||+|++|||+++..++..+++..+.  .+
T Consensus        14 ~~~r~v~l~~~--~~~~G~~l~~~-----~~v~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~   85 (111)
T 1vae_A           14 SPPRGIHFTVE--EGDLGFTLRGN-----TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGG   85 (111)
T ss_dssp             CCCCCCCEECC--SSCCSCCEESS-----SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTT
T ss_pred             CCCeEEEEEcC--CCcccEEEeCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            44577888886  68999998753     368999999999999999 9999999999999999766666554443  34


Q ss_pred             CCeEEEEEec
Q psy6405         127 PPVEITLIKD  136 (548)
Q Consensus       127 ~~VtVtV~Rd  136 (548)
                      ..+.|+|.|.
T Consensus        86 ~~v~l~V~~~   95 (111)
T 1vae_A           86 EEVEMKVVSL   95 (111)
T ss_dssp             SEECEEEECE
T ss_pred             ceEEEEEEec
Confidence            4578888763

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.68  E-value=5.7e-08  Score=82.33  Aligned_cols=86  Identities=29%  Similarity=0.412  Sum_probs=67.1

Q ss_pred             CCCeEEEEEe--cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         126 GPPVEITLIK--DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       126 g~~VtVtV~R--dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      .....+++.|  ...++||++.......   .+++|..|.++|||+++| |++||+|++|||+++.++++.+++..++. 
T Consensus         7 ~~~~~v~l~~~~~~~~lG~~~~~~~~~~---~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-   81 (101)
T 1uez_A            7 GEVRLVSLRRAKAHEGLGFSIRGGSEHG---VGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKG-   81 (101)
T ss_dssp             CCCEEECCCCCCTTTCSSEEEEECTTTT---CCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSS-
T ss_pred             CccEEEEEEECCCCCcccEEEeCCCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHhhcC-
Confidence            3446676766  3467999998765322   369999999999999999 99999999999999999998666555543 


Q ss_pred             CCCceeEEEEeccc
Q psy6405         204 NDGTIQDIKALGYD  217 (548)
Q Consensus       204 ~g~~V~LlV~RilD  217 (548)
                       +..+.+.+.|...
T Consensus        82 -~~~v~l~v~R~g~   94 (101)
T 1uez_A           82 -SKKLVLSVYSAGR   94 (101)
T ss_dssp             -SSSCCEEECCCCC
T ss_pred             -CCeEEEEEEECCc
Confidence             4578888877543

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.68  E-value=1.7e-08  Score=90.82  Aligned_cols=83  Identities=20%  Similarity=0.316  Sum_probs=71.9

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-ND  205 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g  205 (548)
                      ..+.+.+.+...++||++....      .+++|..|.++|||+++|+|++||+|++|||.++.+.++.+++++|+.. .+
T Consensus        27 ~~~~~~l~k~~~glG~~i~~~~------~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G  100 (126)
T 1wif_A           27 KVIQTKLTVGNLGLGLVVIQNG------PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIG  100 (126)
T ss_dssp             CEEEEEEECCTTCCCCCEEEET------TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSS
T ss_pred             ceEEEEEecCCceEeEEEEcCC------CcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCC
Confidence            4467778888889999887532      2488999999999999999999999999999999988999999999984 47


Q ss_pred             CceeEEEEec
Q psy6405         206 GTIQDIKALG  215 (548)
Q Consensus       206 ~~V~LlV~Ri  215 (548)
                      ..+.+.+.|.
T Consensus       101 ~~v~l~V~R~  110 (126)
T 1wif_A          101 TVLQIKAYRG  110 (126)
T ss_dssp             CEEEEEEESS
T ss_pred             CEEEEEEEEC
Confidence            7899999886

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=98.67  E-value=3.9e-08  Score=98.78  Aligned_cols=89  Identities=28%  Similarity=0.420  Sum_probs=76.3

Q ss_pred             CCCeEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhh-cCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         126 GPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEK-NGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       126 g~~VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAek-aGrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      .....|+|.|. +.++||+|.++.+..   .+++|..|.++|||++ +| |++||+|++|||+++.++++.+++.+++..
T Consensus        76 ~~~r~V~L~k~~~~glGf~I~gg~d~~---~gi~V~~V~~gspA~~~aG-L~~GD~Il~VNG~~v~~~t~~e~v~~l~~~  151 (263)
T 1z87_A           76 LQRRRVTVRKADAGGLGISIKGGRENK---MPILISKIFKGLAADQTEA-LFVGDAILSVNGEDLSSATHDEAVQALKKT  151 (263)
T ss_dssp             CSSEEECCCTTTTCCCCCEEEEETTTT---EEEEEEECCTTSHHHHCTT-CCSSCEEEEESSCBCTTSCHHHHHHHHHHC
T ss_pred             CccEEEEEEeCCCCCEeEEEeeccCCC---CCEEEEEECCCCHHHHhCC-CCCCCEEEEECCEECCCcCHHHHHHHHhcC
Confidence            35678888886 588999999876432   3699999999999999 57 999999999999999999999999999997


Q ss_pred             CCCceeEEEEeccccC
Q psy6405         204 NDGTIQDIKALGYDLN  219 (548)
Q Consensus       204 ~g~~V~LlV~RilDLr  219 (548)
                       +..+.++|.|..+..
T Consensus       152 -g~~V~L~V~R~~~~~  166 (263)
T 1z87_A          152 -GKEVVLEVKYMKEVS  166 (263)
T ss_dssp             -CSCCCEEEECCSSSS
T ss_pred             -CCeEEEEEEeCcccc
Confidence             678999999976543

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=98.67  E-value=4.3e-08  Score=92.77  Aligned_cols=85  Identities=27%  Similarity=0.363  Sum_probs=72.7

Q ss_pred             CCeEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         127 PPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       127 ~~VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      ....|++.|. +.++||++.++....   .+++|..|.++|||+++| |++||+|++|||.++.++++.+++.+++.  +
T Consensus        84 ~~~~v~l~k~~~~~lG~~i~~~~~~~---~~~~V~~V~~gspA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~l~~--~  157 (192)
T 3k1r_A           84 KLKEVRLDRLHPEGLGLSVRGGLEFG---CGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRT--E  157 (192)
T ss_dssp             SCEEEEEETTSTTCCCEEEEEEGGGT---EEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHTS--S
T ss_pred             ceEEEEEEeCCCCceeEEEEcccccC---CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHcC--C
Confidence            4467888886 678999998654321   368999999999999999 99999999999999999999999999987  6


Q ss_pred             CceeEEEEeccc
Q psy6405         206 GTIQDIKALGYD  217 (548)
Q Consensus       206 ~~V~LlV~RilD  217 (548)
                      ..+.+.+.|...
T Consensus       158 ~~v~l~v~r~g~  169 (192)
T 3k1r_A          158 KTVSIKVRHIGL  169 (192)
T ss_dssp             SEEEEEEEECCE
T ss_pred             CeEEEEEEECCc
Confidence            789999998765

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=98.67  E-value=9.1e-08  Score=81.62  Aligned_cols=84  Identities=19%  Similarity=0.217  Sum_probs=66.5

Q ss_pred             CCeEEEEEec-CcceeEEEecCCCC----CCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHH
Q psy6405         127 PPVEITLIKD-GAGLGFSLEGGKDS----PFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLK  201 (548)
Q Consensus       127 ~~VtVtV~Rd-GkgLGfSItgg~~s----~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLr  201 (548)
                      .+..+++.|. +.++||+|......    .....+++|..|.++|||+++| |++||+|++|||+++.++++.++.++++
T Consensus        15 ~~~~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~   93 (104)
T 2z17_A           15 QRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIR   93 (104)
T ss_dssp             CCCEEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHH
Confidence            3466777775 56799999873211    1112479999999999999999 9999999999999999999999999999


Q ss_pred             HcCCCceeEEE
Q psy6405         202 KLNDGTIQDIK  212 (548)
Q Consensus       202 s~~g~~V~LlV  212 (548)
                      ...+ .+.+++
T Consensus        94 ~~~~-~v~l~v  103 (104)
T 2z17_A           94 SSGN-LLTIET  103 (104)
T ss_dssp             HTTT-EEEEEC
T ss_pred             hCCC-cEEEEE
Confidence            8743 666543

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=2.1e-08  Score=88.84  Aligned_cols=89  Identities=26%  Similarity=0.307  Sum_probs=72.4

Q ss_pred             CCCeEEEEEecCcceeEEEecCCCC----------------CC---------CCCCeEEEEeccCChhhhcCCCCCCCEE
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDS----------------PF---------GDQPLTVKKIFTGGCAEKNGQLKAGDEI  180 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s----------------~l---------G~~gI~VssV~pgSpAekaGrLq~GDrI  180 (548)
                      ..+..|++.|...++||+|.+....                ..         ...+++|..|.++|||+++| |++||+|
T Consensus         7 ~~~r~v~l~r~~~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I   85 (126)
T 2yuy_A            7 GGPKTVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGDRI   85 (126)
T ss_dssp             SSCCCEEEECCSSSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHT-CCSSCCC
T ss_pred             CCCEEEEEEECCCCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcC-CCCCCEE
Confidence            3456788999889999999752100                00         11368999999999999999 9999999


Q ss_pred             EEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEecc
Q psy6405         181 LTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGY  216 (548)
Q Consensus       181 LaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ril  216 (548)
                      ++|||+++.++++.+++++|+.. +..+.+.+.|..
T Consensus        86 ~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~  120 (126)
T 2yuy_A           86 IKVNGESVIGKTYSQVIALIQNS-DTTLELSVMPKD  120 (126)
T ss_dssp             CEETTEECSSCCHHHHHHHHHTC-TTEEEEECCCCC
T ss_pred             EEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEECC
Confidence            99999999999999999999986 778888887753

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=98.65  E-value=1.7e-07  Score=77.52  Aligned_cols=82  Identities=26%  Similarity=0.433  Sum_probs=64.4

Q ss_pred             CCeEEEEEecC--cceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         127 PPVEITLIKDG--AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       127 ~~VtVtV~RdG--kgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      .++.+++.+..  ..+|+.+.         .+++|..|.++|+|+++|+|+.||+|++|||.++.++++.++.++++...
T Consensus         2 ~~~~v~~~~~~~~~~~g~~~~---------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   72 (92)
T 3cyy_A            2 KPTKVTLVKSAKNEEYGLRLA---------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK   72 (92)
T ss_dssp             CCEEEEEECSSTTSCCCEEEE---------EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred             CcEEEEEEeCCCCCCCCEEEe---------CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            45666666543  45777765         14899999999999999989999999999999999889999999998864


Q ss_pred             CCceeEEEEecccc
Q psy6405         205 DGTIQDIKALGYDL  218 (548)
Q Consensus       205 g~~V~LlV~RilDL  218 (548)
                       ..+.+.+.|....
T Consensus        73 -~~v~l~v~r~g~~   85 (92)
T 3cyy_A           73 -GKLKMVVQRDERA   85 (92)
T ss_dssp             -TEEEEEEEC----
T ss_pred             -CcEEEEEEeCCce
Confidence             4888888876543

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.65  E-value=2.9e-08  Score=84.71  Aligned_cols=86  Identities=28%  Similarity=0.341  Sum_probs=71.5

Q ss_pred             CCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      +..+++++ +....+||++..+.+..   .+++|..|.++|||+++| |++||+|++|||+++.++++.++.++++.. +
T Consensus         4 g~~~~v~~-~~~~~lG~~l~~g~~~~---~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g   77 (103)
T 1v5l_A            4 GSSGNVVL-PGPAPWGFRLSGGIDFN---QPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAA-S   77 (103)
T ss_dssp             CCCBCCEE-ESSSCCSBCCEEETTTT---EEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTC-C
T ss_pred             CCEEEEEE-cCCCCcCEEEeccccCC---CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC-C
Confidence            55566655 45678999998665331   258899999999999999 999999999999999999899999999887 7


Q ss_pred             CceeEEEEeccc
Q psy6405         206 GTIQDIKALGYD  217 (548)
Q Consensus       206 ~~V~LlV~RilD  217 (548)
                      ..+.+.+.|...
T Consensus        78 ~~v~l~v~R~g~   89 (103)
T 1v5l_A           78 YQLCLKIDRAET   89 (103)
T ss_dssp             SEEECEECCCTT
T ss_pred             CeEEEEEEECCe
Confidence            889999988755

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=98.64  E-value=6.7e-08  Score=84.34  Aligned_cols=76  Identities=24%  Similarity=0.334  Sum_probs=57.2

Q ss_pred             EEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeecc--CccHHHH-HHHh-hCCC
Q psy6405          52 SVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK--GLTHKES-LAIL-KRGP  127 (548)
Q Consensus        52 ~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~--~~s~~~a-V~~l-k~g~  127 (548)
                      ..+.+.+.  ..++||.+...    ..+++|..|.++|||+++| |++||+|++|||.++.  .|+.... +... ..+.
T Consensus        19 ~~l~l~~~--~~g~G~~l~~~----~~~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~   91 (101)
T 3qik_A           19 KRLLILPQ--EEDYGFDIEEK----NKAVVVKSVQRGSLAEVAG-LQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRR   91 (101)
T ss_dssp             EEEEECCC--SSSSSEEEEEE----TTEEEEEEECTTSHHHHHT-CCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTC
T ss_pred             CeEEEEeC--CCcccEEEEcc----CCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCC
Confidence            45566665  57899998853    3478999999999999999 9999999999999986  4444332 2222 3578


Q ss_pred             CeEEEEE
Q psy6405         128 PVEITLI  134 (548)
Q Consensus       128 ~VtVtV~  134 (548)
                      ++.+.|.
T Consensus        92 ~v~LLV~   98 (101)
T 3qik_A           92 PLRLLVA   98 (101)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEe
Confidence            8887775

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.64  E-value=8.7e-08  Score=81.68  Aligned_cols=69  Identities=22%  Similarity=0.218  Sum_probs=57.3

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHH-HHHhhCCCCeEEEEEecCcceeEEEecC
Q psy6405          77 SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES-LAILKRGPPVEITLIKDGAGLGFSLEGG  147 (548)
Q Consensus        77 ~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~a-V~~lk~g~~VtVtV~RdGkgLGfSItgg  147 (548)
                      ..+++|..|.++|||++ | |++||+|++|||+++.++..... +.....+..+.|+|.|+++...++++..
T Consensus         6 ~~Gv~V~~V~~~spA~~-G-L~~GD~I~~Ing~~v~~~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~   75 (100)
T 3i18_A            6 YDGVYVMSVKDDVPAAD-V-LHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKINYKHGDKNEQADIKLT   75 (100)
T ss_dssp             CCCEEEEEECTTSGGGG-T-CCTTCEEEEETTBCCSSHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECE
T ss_pred             CCCEEEEEeCCCCchHH-C-CCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEe
Confidence            46899999999999995 9 99999999999999999876654 3334467889999999988777777643

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.64  E-value=6.3e-08  Score=85.48  Aligned_cols=88  Identities=28%  Similarity=0.474  Sum_probs=74.4

Q ss_pred             CCeEEEEEecC-cceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCC-CCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         127 PPVEITLIKDG-AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQL-KAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       127 ~~VtVtV~RdG-kgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrL-q~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      ....+++.+.. .++|+++......    .+++|..|.++|||+++| | +.||+|++|||.++.++++.++.++++...
T Consensus         8 ~~~~v~l~~~~~~glG~~~~~~~~~----~~~~V~~V~~~spA~~aG-ll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   82 (127)
T 1b8q_A            8 NVISVRLFKRKVGGLGFLVKERVSK----PPVIISDLIRGGAAEQSG-LIQAGDIILAVNDRPLVDLSYDSALEVLRGIA   82 (127)
T ss_dssp             CSEEEEEECTTTSCCSCCEEECTTS----SCEEECCCSSSSSHHHHS-SCCTTTCCCEETTEECSSSCHHHHHHHHHSCC
T ss_pred             ceEEEEEEeCCCCcEeEEEEecCCC----CCEEEEEeCCCCHHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            45678887764 7899999876532    369999999999999999 7 999999999999999999999999999876


Q ss_pred             CCceeEEEEeccccC
Q psy6405         205 DGTIQDIKALGYDLN  219 (548)
Q Consensus       205 g~~V~LlV~RilDLr  219 (548)
                      +..+.+.+.|.....
T Consensus        83 g~~v~l~v~R~g~~~   97 (127)
T 1b8q_A           83 SETHVVLILRGPEGF   97 (127)
T ss_dssp             SSCEEEEEECCCCSE
T ss_pred             CCeEEEEEEeCCceE
Confidence            789999999876543

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.62  E-value=4.8e-08  Score=81.12  Aligned_cols=80  Identities=16%  Similarity=0.183  Sum_probs=59.2

Q ss_pred             ceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeE
Q psy6405          64 SVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGF  142 (548)
Q Consensus        64 GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGf  142 (548)
                      .+|+......+. -.++.|..+.|+|||+++| |++||+|++|||+++.+|.... .+.....+..+.++|.|++..+.+
T Consensus         6 ~~~~~p~~~~g~-~~G~~V~~~~~~s~A~~aG-l~~GD~I~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R~g~~~~~   83 (87)
T 2i6v_A            6 YVRLSQVKRDDK-VLGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQQHDV   83 (87)
T ss_dssp             TEEEEEEEETTE-EEEEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTCHHHHHHHHHTGGGCSEEEEEEEETTEEEEE
T ss_pred             ccceEEEeeCCe-EEEEEEEeCCCCCHHHHCC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEE
Confidence            456555422111 1256778888888999999 9999999999999999997665 344455688899999998876666


Q ss_pred             EEe
Q psy6405         143 SLE  145 (548)
Q Consensus       143 SIt  145 (548)
                      +++
T Consensus        84 ~v~   86 (87)
T 2i6v_A           84 YIQ   86 (87)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=98.62  E-value=1e-07  Score=85.67  Aligned_cols=70  Identities=27%  Similarity=0.319  Sum_probs=59.5

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHH-HHHhhCCCCeEEEEEecCcceeEEEecCC
Q psy6405          77 SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES-LAILKRGPPVEITLIKDGAGLGFSLEGGK  148 (548)
Q Consensus        77 ~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~a-V~~lk~g~~VtVtV~RdGkgLGfSItgg~  148 (548)
                      ..+++|..|.++|||+ +| |++||+|++|||+++.++..... +....++..+.++|.|+++.+.++++...
T Consensus        56 ~~g~~V~~V~~~spA~-aG-L~~GD~I~~inG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~  126 (134)
T 2l97_A           56 TSGVIVRSVQSNMPAN-GH-LEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKITYYRNGKEETTSIKLNK  126 (134)
T ss_dssp             CSCEEEEECSTTSGGG-TT-SCSSCEEEEETTEECCCHHHHHHHHHHSSTTCEEEEEEEETTEEEEEEEECCC
T ss_pred             CCCEEEEEECCCCchH-HC-CCCCCEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEcc
Confidence            3579999999999999 99 99999999999999999876653 33344688999999999988888887654

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.62  E-value=3.4e-08  Score=83.52  Aligned_cols=79  Identities=28%  Similarity=0.420  Sum_probs=67.0

Q ss_pred             CeEEEEEecC--cceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         128 PVEITLIKDG--AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       128 ~VtVtV~RdG--kgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      +++|++.|..  .++||.+.+.       .+++|..|.++|||+ +| |++||+|++|||.++.++++.+++.+++.. +
T Consensus         9 ~~~v~l~~~~~~~~~G~~l~~~-------~~~~V~~V~~~spA~-ag-L~~GD~Il~ing~~v~~~~~~~~~~~~~~~-g   78 (96)
T 2edv_A            9 RHTVKIDKDTLLQDYGFHISES-------LPLTVVAVTAGGSAH-GK-LFPGDQILQMNNEPAEDLSWERAVDILREA-E   78 (96)
T ss_dssp             EEEEEECCCSSSCSCSBCCCSS-------SSCBCCCBCSSSSST-TT-SCTTCBEEEESSCBSTTCCHHHHHHHHHHC-S
T ss_pred             cEEEEEEECCCCCcccEEEecC-------CCeEEEEECCCCchh-hC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-C
Confidence            3667777766  4688888752       368999999999996 78 999999999999999999999999999884 7


Q ss_pred             CceeEEEEecc
Q psy6405         206 GTIQDIKALGY  216 (548)
Q Consensus       206 ~~V~LlV~Ril  216 (548)
                      ..+.+++.|..
T Consensus        79 ~~v~l~v~R~~   89 (96)
T 2edv_A           79 DSLSITVVRCT   89 (96)
T ss_dssp             SCEEEEEEECC
T ss_pred             CeEEEEEEECC
Confidence            88999998854

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=98.61  E-value=1.7e-07  Score=77.44  Aligned_cols=80  Identities=21%  Similarity=0.210  Sum_probs=63.1

Q ss_pred             eEEEEEecC-c--ceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-C
Q psy6405         129 VEITLIKDG-A--GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-N  204 (548)
Q Consensus       129 VtVtV~RdG-k--gLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~  204 (548)
                      ..+.+.+.. .  .+|+++....      .+++|..|.++|||+++| |++||+|++|||.++.+.+..++.++++.. .
T Consensus         5 ~~~~~~~~~~~~~~lG~~~~~~~------~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   77 (90)
T 2eaq_A            5 MRISINQTPGKSLDFGFTIKWDI------PGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAKAQE   77 (90)
T ss_dssp             EEEEEECCTTCSSCCSEEEEEET------TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECCTTCHHHHHHHHHHHHH
T ss_pred             eEEEEEecCCCCCcccEEEEecC------CCEEEEEECCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHHHhcCC
Confidence            345555433 2  5888886432      258999999999999999 999999999999999777788999999863 4


Q ss_pred             CCceeEEEEec
Q psy6405         205 DGTIQDIKALG  215 (548)
Q Consensus       205 g~~V~LlV~Ri  215 (548)
                      +..+.+.+.|.
T Consensus        78 g~~v~l~v~R~   88 (90)
T 2eaq_A           78 TGHLVMDVRRY   88 (90)
T ss_dssp             HTEEEEEEEEE
T ss_pred             CCEEEEEEEeC
Confidence            67888888875

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=98.60  E-value=1.7e-07  Score=81.01  Aligned_cols=84  Identities=20%  Similarity=0.323  Sum_probs=68.7

Q ss_pred             CCCeEEEEE-ecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         126 GPPVEITLI-KDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       126 g~~VtVtV~-RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      +.+.++++. +...++||++.......   .+++|..|.++|||+++| |++||+|++|||+++.++++.++..+++.. 
T Consensus        14 ~~~~~v~~~~~~~~~lG~~l~~~~~~~---~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~-   88 (114)
T 1x5n_A           14 NKEKKVFISLVGSRGLGCSISSGPIQK---PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSS-   88 (114)
T ss_dssp             CSSEEEEECCCSSCCCCEEEEECCSSS---CSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHC-
T ss_pred             CCcEEEEEEEcCCCceeEEEeecCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC-
Confidence            445667775 45577999998764321   369999999999999999 999999999999999999987888888865 


Q ss_pred             CCceeEEEEec
Q psy6405         205 DGTIQDIKALG  215 (548)
Q Consensus       205 g~~V~LlV~Ri  215 (548)
                       ..+.+.+.|.
T Consensus        89 -~~v~l~v~r~   98 (114)
T 1x5n_A           89 -RSLTISIVAA   98 (114)
T ss_dssp             -SSEEEEECSS
T ss_pred             -CeEEEEEEcC
Confidence             4788888775

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=98.59  E-value=2e-07  Score=81.37  Aligned_cols=79  Identities=24%  Similarity=0.324  Sum_probs=65.9

Q ss_pred             eEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc--CCC
Q psy6405         129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL--NDG  206 (548)
Q Consensus       129 VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~--~g~  206 (548)
                      ..+.+.+...++||.+....      .+..|.+|.++|||+++| |++||+|++|||.++...+.+++++.++..  .+.
T Consensus        19 ~~l~l~~~~~g~G~~l~~~~------~~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~   91 (101)
T 3qik_A           19 KRLLILPQEEDYGFDIEEKN------KAVVVKSVQRGSLAEVAG-LQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRR   91 (101)
T ss_dssp             EEEEECCCSSSSSEEEEEET------TEEEEEEECTTSHHHHHT-CCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTC
T ss_pred             CeEEEEeCCCcccEEEEccC------CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCC
Confidence            45667777788999987532      247899999999999999 999999999999999877788999999884  577


Q ss_pred             ceeEEEEe
Q psy6405         207 TIQDIKAL  214 (548)
Q Consensus       207 ~V~LlV~R  214 (548)
                      .+.++|+-
T Consensus        92 ~v~LLV~~   99 (101)
T 3qik_A           92 PLRLLVAT   99 (101)
T ss_dssp             CEEEEEEC
T ss_pred             eEEEEEec
Confidence            88888753

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=98.59  E-value=7.5e-08  Score=79.79  Aligned_cols=67  Identities=24%  Similarity=0.406  Sum_probs=55.0

Q ss_pred             CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEEec
Q psy6405          79 EITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEG  146 (548)
Q Consensus        79 gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItg  146 (548)
                      +++|..|.++|||+++| |++||+|++|||+++.++...........+..+.+++.|++..+.++++.
T Consensus         5 ~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v~~   71 (91)
T 2zpm_A            5 EPVLENVQPNSAASXAG-LQAGDRIVXVDGQPLTQWVTFVMLVRDNPGXSLALEIERQGSPLSLTLIP   71 (91)
T ss_dssp             -CBCSEECTTSHHHHTT-CCTTCEEEEETTEECCCHHHHHHHHHHCTTCCEEEEEEETTEEEEEEECC
T ss_pred             CeEEEEECCCChHHhcC-CCCCCEEEEECCeEcCCHHHHHHHHhcCCCCeEEEEEEECCeEEEEEEEE
Confidence            45788999999999999 99999999999999999876654333346788999999988777777764

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.57  E-value=1e-07  Score=81.02  Aligned_cols=86  Identities=34%  Similarity=0.451  Sum_probs=67.8

Q ss_pred             CCCeEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhc-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         126 GPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKN-GQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       126 g~~VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAeka-GrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      +....+++.+. ...+||++.++....   .+++|..|.++|||+++ | |++||+|++|||+++.++ +.+++.+++..
T Consensus         8 ~~~~~~~v~~~~~~~~G~~~~gg~~~~---~~v~V~~V~~~spA~~agG-L~~GD~I~~ing~~v~~~-~~~~~~~~~~~   82 (100)
T 2edp_A            8 GSFQYVPVQLQGGAPWGFTLKGGLEHC---EPLTVSKIEDGGKAALSQK-MRTGDELVNINGTPLYGS-RQEALILIKGS   82 (100)
T ss_dssp             CCCEEEEEECCSCSCCCCCEEEEGGGT---EEEEECCCCTTSHHHHHTS-CCTTCEEEEETTEECCSC-SHHHHHHHHTC
T ss_pred             CCcEEEEEEECCCCCcCEEEeccCCCC---CCeEEEEECCCCHHHHcCC-CCCCCEEEEECCEEccch-HHHHHHHHHhC
Confidence            34455666553 357899997654321   25899999999999999 7 999999999999999997 77888888876


Q ss_pred             CCCceeEEEEeccc
Q psy6405         204 NDGTIQDIKALGYD  217 (548)
Q Consensus       204 ~g~~V~LlV~RilD  217 (548)
                       +..+.+.+.|...
T Consensus        83 -~~~v~l~v~R~~~   95 (100)
T 2edp_A           83 -FRILKLIVRRRNS   95 (100)
T ss_dssp             -CSSCEEEEEECCC
T ss_pred             -CCeEEEEEEeCCC
Confidence             6788899988643

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.56  E-value=9.5e-08  Score=80.77  Aligned_cols=68  Identities=28%  Similarity=0.354  Sum_probs=57.2

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHH-HHhhCCCCeEEEEEecCcceeEEEecC
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL-AILKRGPPVEITLIKDGAGLGFSLEGG  147 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV-~~lk~g~~VtVtV~RdGkgLGfSItgg  147 (548)
                      .+++|..|.++|||++ | |++||+|++|||.++.++.....+ ....++..+.++|.|+++.+.++++..
T Consensus         5 ~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~   73 (94)
T 2kl1_A            5 KGVYVMSVLPNMPAAG-R-LEAGDRIAAIDGQPINTSEQIVSYVREKQAGDRVRVTFIRDRKQHEAELVLK   73 (94)
T ss_dssp             CCEECCCCCTTSTTBT-T-BCTTCEEEEETTBCCCCHHHHHHHHHHSCTTCCEEEEEEETTEEEEEEECCC
T ss_pred             CcEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEe
Confidence            4789999999999998 9 999999999999999988665533 333468899999999998888887654

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.56  E-value=2.5e-08  Score=84.28  Aligned_cols=68  Identities=21%  Similarity=0.306  Sum_probs=55.6

Q ss_pred             CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHH-HhhCCCCeEEEEEecCcceeEEEecCC
Q psy6405          79 EITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA-ILKRGPPVEITLIKDGAGLGFSLEGGK  148 (548)
Q Consensus        79 gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~-~lk~g~~VtVtV~RdGkgLGfSItgg~  148 (548)
                      +++|..|.++|||++ | |++||+|++|||+++.++.....+. ...++.++.|+|.|+++.+.++++...
T Consensus         2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~   70 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-K-IEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQ   70 (91)
T ss_dssp             CSSCCCCCCSSCCSS-C-CCSSCEEEEETTBCCSSHHHHHHHHSSCCSSCEECEEEESSSCEECCCEECCC
T ss_pred             ceEEEEECCCChHHH-c-CCCCCEEEEECCEECCCHHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEEec
Confidence            578889999999999 9 9999999999999999886554332 223678899999999988777776543

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.55  E-value=4.1e-07  Score=85.65  Aligned_cols=83  Identities=27%  Similarity=0.416  Sum_probs=69.8

Q ss_pred             eEEEEEe-cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhc-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         129 VEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKN-GQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       129 VtVtV~R-dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAeka-GrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      ..+++.| .+.++||++..+....   .+++|..|.++|||+++ | |++||+|++|||+++.++++.++..+++.. +.
T Consensus         9 ~~v~l~~~~~~~lG~~i~~~~~~~---~~~~V~~v~~~spA~~agg-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g~   83 (200)
T 2qt5_A            9 TVVELMKKEGTTLGLTVSGGIDKD---GKPRVSNLRQGGIAARSDQ-LDVGDYIKAVNGINLAKFRHDEIISLLKNV-GE   83 (200)
T ss_dssp             EEEEEECCTTCCCCEEEECCTTSS---SCSEEEEECTTSHHHHTTS-CCTTCEEEEETTEECTTSCHHHHHHHHHTC-CS
T ss_pred             EEEEEEeCCCCCCCEEEecccCCC---CCeEEEEECCCChHHhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC-CC
Confidence            4566654 6678999998876542   35899999999999999 7 999999999999999999999999888876 66


Q ss_pred             ceeEEEEecc
Q psy6405         207 TIQDIKALGY  216 (548)
Q Consensus       207 ~V~LlV~Ril  216 (548)
                      .+.+.+.|..
T Consensus        84 ~v~l~v~R~~   93 (200)
T 2qt5_A           84 RVVLEVEYEL   93 (200)
T ss_dssp             EEEEEEEEEC
T ss_pred             eEEEEEeccC
Confidence            8888888754

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.55  E-value=2.9e-07  Score=86.70  Aligned_cols=91  Identities=24%  Similarity=0.336  Sum_probs=75.0

Q ss_pred             CCeEEEEEec-CcceeEEEecCCCCC-CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         127 PPVEITLIKD-GAGLGFSLEGGKDSP-FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       127 ~~VtVtV~Rd-GkgLGfSItgg~~s~-lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      ..+.|++.|. ..++||++.++.... .+..+++|..|.++|||+++|+|+.||+|++|||.++.++++.++..+++...
T Consensus         6 ~~~~v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   85 (196)
T 1p1d_A            6 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS   85 (196)
T ss_dssp             EEEEEEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCC
T ss_pred             EEEEEEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            3467778776 488999999874322 12346899999999999999999999999999999999988889999998875


Q ss_pred             -CCceeEEEEeccc
Q psy6405         205 -DGTIQDIKALGYD  217 (548)
Q Consensus       205 -g~~V~LlV~RilD  217 (548)
                       +..+.+.+.|...
T Consensus        86 ~g~~v~l~v~R~~~   99 (196)
T 1p1d_A           86 ITSKVTLEIEFDVA   99 (196)
T ss_dssp             SSSEEEEEEEECSC
T ss_pred             CCCeEEEEEEecCC
Confidence             6788999988654

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.53  E-value=3.8e-07  Score=76.75  Aligned_cols=75  Identities=23%  Similarity=0.374  Sum_probs=60.8

Q ss_pred             CeEEEEEec--CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         128 PVEITLIKD--GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       128 ~VtVtV~Rd--GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      ...+++.+.  ...+||++..         + +|..|.++|||+++| |+.||+|++|||.++.+.++.++.++++.. +
T Consensus        12 ~~~~~i~~~~~~~~lG~~~~~---------G-~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~-g   79 (90)
T 1y7n_A           12 VTTVLIRRPDLRYQLGFSVQN---------G-IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNA-V   79 (90)
T ss_dssp             CEEEEEEESSTTSCCCEEEET---------T-EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHC-C
T ss_pred             cceEEEEeCCCccccCeEecC---------C-EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-C
Confidence            345555553  3568888743         2 789999999999999 999999999999999999999999999975 6


Q ss_pred             CceeEEEEe
Q psy6405         206 GTIQDIKAL  214 (548)
Q Consensus       206 ~~V~LlV~R  214 (548)
                      ..+.+.+.+
T Consensus        80 ~~v~l~v~p   88 (90)
T 1y7n_A           80 GEIHMKTMP   88 (90)
T ss_dssp             EEEEEEEEC
T ss_pred             CeEEEEEEE
Confidence            677777654

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=98.52  E-value=2.9e-07  Score=79.45  Aligned_cols=67  Identities=24%  Similarity=0.425  Sum_probs=56.1

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEEecC
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGG  147 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg  147 (548)
                      .+++|..|.++|||+++| |++||+|++|||+++.++.....  .+..+..+.++|.|++..+.++++..
T Consensus        35 ~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~--~l~~~~~v~l~v~R~g~~~~~~v~~~  101 (113)
T 2pzd_A           35 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNAEDVYE--AVRTQSQLAVQIRRGRETLTLYVTPE  101 (113)
T ss_dssp             SCEEEEEEBTTSHHHHHT-CCTTCEEEEETTEECCSHHHHHH--HHHHCSSEEEEEEETTEEEEEEECCE
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCHHHHHH--HHhCCCeEEEEEEECCEEEEEEEEEe
Confidence            589999999999999999 99999999999999987754433  33347889999999888777777654

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.52  E-value=6.6e-08  Score=85.19  Aligned_cols=84  Identities=30%  Similarity=0.349  Sum_probs=67.2

Q ss_pred             CCeEEEEEecCc---ceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         127 PPVEITLIKDGA---GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       127 ~~VtVtV~RdGk---gLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      ....+.+.|.+.   .+||+|......  +..+++|..|.++|||+++| |++||+|++|||.++.++++.++.++++. 
T Consensus        15 ~~~~v~l~k~~~~~~~~G~~v~~~~~~--~~~gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~-   90 (114)
T 2d8i_A           15 VTQSIHIEKSDTAADTYGFSLSSVEED--GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQ-   90 (114)
T ss_dssp             EEEEEEEECSCTTTCCCCCEEEEEEET--TEEEEEEEECCTTSSHHHHT-CCTTCCEEEESSCBGGGCCHHHHHHHHTS-
T ss_pred             ceEEEEEEeCCCCccccCEEEEecCcC--CcCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhC-
Confidence            346778888765   689998753221  11368999999999999999 99999999999999999988888888874 


Q ss_pred             CCCceeEEEEecc
Q psy6405         204 NDGTIQDIKALGY  216 (548)
Q Consensus       204 ~g~~V~LlV~Ril  216 (548)
                        ..+.+++.|..
T Consensus        91 --~~v~l~v~R~p  101 (114)
T 2d8i_A           91 --PSLGLLVRTYP  101 (114)
T ss_dssp             --SEEEEEEEECC
T ss_pred             --CcEEEEEEECC
Confidence              37788887753

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.51  E-value=2.9e-07  Score=81.19  Aligned_cols=88  Identities=24%  Similarity=0.295  Sum_probs=68.1

Q ss_pred             EEEEecCc--ceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCce
Q psy6405         131 ITLIKDGA--GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI  208 (548)
Q Consensus       131 VtV~RdGk--gLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V  208 (548)
                      +.+.+.+.  .+|+++....... ...+++|..|.++|||+++|+|++||+|++|||+++.+  +.++.++|+..++..+
T Consensus        23 ~~~~~~~~~~~lG~~~~~~~~~~-~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~v   99 (124)
T 1wh1_A           23 VDLYRMNSQDKLGLTVCYRTDDE-DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSEENKNF   99 (124)
T ss_dssp             BCCCCSSTTCCCCEEEECCCCCS-SCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTCSSCCSC
T ss_pred             EEEEecCCCCcccEEEEecCCCC-CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCEE
Confidence            33444443  6888887654321 12479999999999999999999999999999999986  5589899988667889


Q ss_pred             eEEEEeccccCCC
Q psy6405         209 QDIKALGYDLNSL  221 (548)
Q Consensus       209 ~LlV~RilDLr~~  221 (548)
                      .+++.|.......
T Consensus       100 ~l~v~R~g~~~~~  112 (124)
T 1wh1_A          100 SLLIARPELQLDE  112 (124)
T ss_dssp             CEEEEECSSCCCC
T ss_pred             EEEEEECCEEeec
Confidence            9999997654443

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=98.51  E-value=2.9e-07  Score=79.51  Aligned_cols=67  Identities=25%  Similarity=0.464  Sum_probs=56.1

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEEec
Q psy6405          77 SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEG  146 (548)
Q Consensus        77 ~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItg  146 (548)
                      ..+++|..|.++|||+++| |++||+|++|||+++.++......  +..+..+.++|.|++..+.++++.
T Consensus        34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~--l~~g~~v~l~v~R~g~~~~~~v~~  100 (112)
T 2p3w_A           34 SSGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVDSSELQEA--VLTESPLLLEVRRGNDDLLFSIAP  100 (112)
T ss_dssp             CSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSHHHHHHH--HHHCSSEEEEEEETTEEEEEEECC
T ss_pred             CCCeEEEEECCCChHHHCC-CCCCCEEEEECCEECCCHHHHHHH--HhCCCeEEEEEEECCEEEEEEEEE
Confidence            3579999999999999999 999999999999999988655432  245888999999988777777654

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.50  E-value=3.3e-07  Score=77.66  Aligned_cols=66  Identities=14%  Similarity=0.122  Sum_probs=52.3

Q ss_pred             eEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHH-HHHhhCCCCeEEEEEecCc--ceeEEEec
Q psy6405          80 ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES-LAILKRGPPVEITLIKDGA--GLGFSLEG  146 (548)
Q Consensus        80 VvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~a-V~~lk~g~~VtVtV~RdGk--gLGfSItg  146 (548)
                      .+|..|.++|||+++| |++||+|++|||++|.+|..... +.....+..+.++|.|++.  ...++|..
T Consensus         4 p~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~d~~~~l~~~~~~~~v~l~v~R~g~~~~~~~~l~l   72 (95)
T 3id1_A            4 PVVGEIAANSIAAEAQ-IAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFGSDQRRDVKLDL   72 (95)
T ss_dssp             CBEEEECTTSHHHHTT-CCTTCEEEEETTEECSSHHHHHHHHHHTTTCSEEEEEEECTTCCCCEEEEEEC
T ss_pred             CEEEeeCCCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHHhcCCCcEEEEEEECCCCceEEEEEEc
Confidence            4788999999999999 99999999999999999977654 3333334679999999874  34555544

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.50  E-value=2.4e-07  Score=79.64  Aligned_cols=66  Identities=17%  Similarity=0.215  Sum_probs=53.6

Q ss_pred             CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeEEEe
Q psy6405          79 EITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGFSLE  145 (548)
Q Consensus        79 gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGfSIt  145 (548)
                      ++.|..+.|+|||+++| |++||+|++|||+++.+|.... .+....++..+.++|.|++..+.++++
T Consensus        38 G~~V~~~~pas~A~~aG-l~~GDvI~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R~g~~~~~~v~  104 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQQHDVYIQ  104 (105)
T ss_dssp             EEEEEECSCTHHHHHHT-CCTTCEEEEETTEETTSTTHHHHHHHHHTTCSEEEEEEEETTEEEEEEEE
T ss_pred             EEEEecCCCCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCeEEEEEEECCEEEEEEEe
Confidence            45667778888889999 9999999999999999998766 344456788899999998876666553

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.48  E-value=4.1e-07  Score=95.74  Aligned_cols=84  Identities=29%  Similarity=0.449  Sum_probs=70.6

Q ss_pred             CeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHH-cCCC
Q psy6405         128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK-LNDG  206 (548)
Q Consensus       128 ~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs-~~g~  206 (548)
                      .+.+...+.+.++|+++.++...     +++|..|.++|||+++| |++||+|++|||.++.++++.+++.+++. ..+.
T Consensus         9 ~~~~v~~~k~~~lG~~i~gg~~~-----gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~   82 (391)
T 3tsz_A            9 SMKLVKFRKGDSVGLRLAGGNDV-----GIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGE   82 (391)
T ss_dssp             CEEEEEEECCSSCCEEEEEETTT-----EEEEEEECTTCHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTS
T ss_pred             CcEEEEeecCCceeEEEEecCCC-----CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCC
Confidence            34444444456799999876533     69999999999999999 99999999999999999999999999997 4677


Q ss_pred             ceeEEEEeccc
Q psy6405         207 TIQDIKALGYD  217 (548)
Q Consensus       207 ~V~LlV~RilD  217 (548)
                      .+.+++.|..+
T Consensus        83 ~v~l~v~r~~~   93 (391)
T 3tsz_A           83 EVTILAQKKKD   93 (391)
T ss_dssp             EEEEEEEECHH
T ss_pred             eEEEEEeeCCc
Confidence            89999998754

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=98.48  E-value=5.7e-07  Score=84.07  Aligned_cols=74  Identities=34%  Similarity=0.509  Sum_probs=63.8

Q ss_pred             cceeEEEecCCCC---CC--CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEE
Q psy6405         138 AGLGFSLEGGKDS---PF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIK  212 (548)
Q Consensus       138 kgLGfSItgg~~s---~l--G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV  212 (548)
                      .++||+|.++...   ++  +..+++|..|.++|||++ | |++||+|++|||+++.++++.+++.+++.. +..+.+.+
T Consensus         2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-g-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v   78 (195)
T 2qbw_A            2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTF-QNTVELII   78 (195)
T ss_dssp             CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCCHHHHHHHHHHC-CSEEEEEE
T ss_pred             CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEE
Confidence            4689999987532   11  335899999999999999 8 999999999999999999999999999987 45889999


Q ss_pred             Ee
Q psy6405         213 AL  214 (548)
Q Consensus       213 ~R  214 (548)
                      .|
T Consensus        79 ~r   80 (195)
T 2qbw_A           79 VR   80 (195)
T ss_dssp             EE
T ss_pred             EE
Confidence            88

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=97.84  E-value=2e-08  Score=87.89  Aligned_cols=82  Identities=32%  Similarity=0.543  Sum_probs=65.4

Q ss_pred             CCeEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhh-cCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         127 PPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEK-NGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       127 ~~VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAek-aGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      ....+++.|. +.++||++.++....   .+++|..|.++|||++ +| |++||+|++|||.++.+.++.+++.+++.. 
T Consensus        27 ~~~~v~l~k~~~~glG~~l~~g~~~~---~gv~V~~V~~~spA~~~aG-L~~GD~Il~ING~~v~~~~~~~~~~~l~~~-  101 (112)
T 2lob_A           27 GIRKVLLLKEDHEGLGISITGGKEHG---VPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQ-  101 (112)
Confidence            3456667664 478999998765432   3689999999999999 78 999999999999999988888999999876 


Q ss_pred             CCceeEEEE
Q psy6405         205 DGTIQDIKA  213 (548)
Q Consensus       205 g~~V~LlV~  213 (548)
                      +..+.+.+.
T Consensus       102 ~~~v~l~V~  110 (112)
T 2lob_A          102 RGEIEFEVV  110 (112)
Confidence            344666554

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.45  E-value=3e-07  Score=89.60  Aligned_cols=87  Identities=22%  Similarity=0.227  Sum_probs=74.1

Q ss_pred             CCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       125 ~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      ...+..|++.|...++||.+......    .+++|..|.++|||+++| |+.||+|++|||+.|.++++.+++++++.. 
T Consensus         7 ~~~~r~v~l~k~~~glG~~l~~~~~~----~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~~V~~~s~~dl~~~l~~~-   80 (216)
T 2krg_A            7 MLRPRLCTMKKGPSGYGFNLHSDKSK----PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAG-   80 (216)
T ss_dssp             TCCCEEEEEECCSSSSCEEECCCSSS----CSCBEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCTHHHHHHHHHH-
T ss_pred             ccceEEEEEEeCCCCceEEEEecCCC----CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhc-
Confidence            34567888999888999999876532    368999999999999999 999999999999999988888999999887 


Q ss_pred             CCce-eEEEEeccc
Q psy6405         205 DGTI-QDIKALGYD  217 (548)
Q Consensus       205 g~~V-~LlV~RilD  217 (548)
                      +..+ .+++.|...
T Consensus        81 g~~v~~l~V~R~g~   94 (216)
T 2krg_A           81 GDETKLLVVDRETD   94 (216)
T ss_dssp             CSEEEEEECCHHHH
T ss_pred             CCeEEEEEEEECCE
Confidence            6677 777777554

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.44  E-value=9.9e-07  Score=81.08  Aligned_cols=82  Identities=26%  Similarity=0.280  Sum_probs=67.8

Q ss_pred             CCeEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         127 PPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       127 ~~VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      .+..|++.|. ...+|+++....      .+++|..|.++|||+++| |+.||+|++|||.++.++++..+..+++...+
T Consensus         4 ~~r~v~l~k~~~~~lG~~~~~~~------~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~   76 (166)
T 1w9e_A            4 DPREVILCKDQDGKIGLRLKSID------NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFG   76 (166)
T ss_dssp             CCEEEEEECCTTSCCSEEEEEET------TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             CCEEEEEEeCCCCcEeEEEEeCC------CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCC
Confidence            4567888874 357899987643      359999999999999999 99999999999999999997667788887767


Q ss_pred             CceeEEEEec
Q psy6405         206 GTIQDIKALG  215 (548)
Q Consensus       206 ~~V~LlV~Ri  215 (548)
                      ..+.+.+.+.
T Consensus        77 ~~v~l~vr~~   86 (166)
T 1w9e_A           77 EKITMTIRDR   86 (166)
T ss_dssp             SEEEEEEECC
T ss_pred             CEEEEEEEcC
Confidence            7888888544

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=98.43  E-value=7.6e-07  Score=71.43  Aligned_cols=68  Identities=25%  Similarity=0.419  Sum_probs=57.0

Q ss_pred             cceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEec
Q psy6405         138 AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALG  215 (548)
Q Consensus       138 kgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ri  215 (548)
                      ..+|+.+.         .+++|..|.++|||+++|.|++||+|++|||.++.++++.++.++++... ..+.+.+.|.
T Consensus        13 ~~~g~~~~---------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~   80 (81)
T 2rcz_A           13 EEYGLRLA---------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK-GKLKMVVQRD   80 (81)
T ss_dssp             CCCCEEEE---------EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTST-TEEEEEEEC-
T ss_pred             CCCCEEEe---------CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CeEEEEEEeC
Confidence            45666665         14899999999999999989999999999999999889999999998764 4778887663

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=98.42  E-value=5.7e-07  Score=91.31  Aligned_cols=83  Identities=16%  Similarity=0.298  Sum_probs=65.5

Q ss_pred             CCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHH-HHhhCCCCeEEEEEe-cCcc
Q psy6405          62 GNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL-AILKRGPPVEITLIK-DGAG  139 (548)
Q Consensus        62 ~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV-~~lk~g~~VtVtV~R-dGkg  139 (548)
                      ...+|+.+....  ...+++|..|.++|||+++| |++||+|++|||+++.++.....+ ....++.++.|+|.| +++.
T Consensus       228 ~~~lGi~~~~~~--~~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R~~g~~  304 (324)
T 1y8t_A          228 HASLGVQVTNDK--DTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSADALVAAVRSKAPGATVALTFQDPSGGS  304 (324)
T ss_dssp             CEECCEEEESCS--SSSSEEEEEECTTSTTTTTT-CCTTCEEEEETTEECCSHHHHHHHHHTSCTTCEEEEEEECSSCCE
T ss_pred             ccccceEeeecc--CCCceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCCCE
Confidence            345677665321  13579999999999999999 999999999999999998766543 333568889999999 8888


Q ss_pred             eeEEEecC
Q psy6405         140 LGFSLEGG  147 (548)
Q Consensus       140 LGfSItgg  147 (548)
                      +.++++..
T Consensus       305 ~~~~v~~~  312 (324)
T 1y8t_A          305 RTVQVTLG  312 (324)
T ss_dssp             EEEEEECE
T ss_pred             EEEEEEEc
Confidence            77777654

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.39  E-value=7.7e-07  Score=95.99  Aligned_cols=81  Identities=31%  Similarity=0.446  Sum_probs=69.8

Q ss_pred             eEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCc
Q psy6405         129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGT  207 (548)
Q Consensus       129 VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~  207 (548)
                      ..|.+.+ +.++||++.++...     +++|..|.++|||+++| |++||+|++|||+++.++++.+++.+|+.. .+..
T Consensus         3 r~V~l~k-~~~lG~~i~gg~~~-----Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~   75 (468)
T 3shw_A            3 KLVKFRK-GDSVGLRLAGGNDV-----GIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEE   75 (468)
T ss_dssp             EEEEEEC-CSSCCEEEEEETTT-----EEEEEEECSSSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSE
T ss_pred             eEEEEec-CCccceEEEccCcC-----CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCE
Confidence            3455555 58899999876543     69999999999999999 999999999999999999999999999984 4778


Q ss_pred             eeEEEEecc
Q psy6405         208 IQDIKALGY  216 (548)
Q Consensus       208 V~LlV~Ril  216 (548)
                      +.+.+.|..
T Consensus        76 v~L~V~r~g   84 (468)
T 3shw_A           76 VTILAQKKK   84 (468)
T ss_dssp             EEEEEEECH
T ss_pred             EEEEEEECC
Confidence            999998854

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=98.37  E-value=6e-07  Score=99.34  Aligned_cols=82  Identities=20%  Similarity=0.248  Sum_probs=67.3

Q ss_pred             CceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeE
Q psy6405          63 NSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGF  142 (548)
Q Consensus        63 ~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGf  142 (548)
                      .++|+.+...    .++++|..|.++|||+++| |++||+|++|||.+|.......++...++|+++.|+|.|+++...+
T Consensus       485 ~~lG~~~~~~----~~gv~V~~V~~~spA~~AG-L~~GD~I~aInG~~v~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~  559 (597)
T 4fgm_A          485 VNFGAKYKAS----PQGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATEQSVKRILERYIPGDTVTIHAFRRDELMTL  559 (597)
T ss_dssp             CCCSEEEEEE----TTEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCTTTHHHHHTTCCTTCEEEEEEEETTEEEEE
T ss_pred             cccceEEecc----CCeEEEEEeCCCChHHHCC-CCCCCEEEEECCEECCHHHHHHHHHhcCCCCEEEEEEEECCEEEEE
Confidence            4789888743    2479999999999999999 9999999999999995334444555556789999999999998888


Q ss_pred             EEecCCC
Q psy6405         143 SLEGGKD  149 (548)
Q Consensus       143 SItgg~~  149 (548)
                      +|+....
T Consensus       560 ~v~l~~~  566 (597)
T 4fgm_A          560 ELTWQEP  566 (597)
T ss_dssp             EEECCCC
T ss_pred             EEEecCC
Confidence            8887653

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.37  E-value=1.3e-06  Score=77.23  Aligned_cols=62  Identities=24%  Similarity=0.265  Sum_probs=56.0

Q ss_pred             CCeEEEEecc--CChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEecccc
Q psy6405         155 QPLTVKKIFT--GGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDL  218 (548)
Q Consensus       155 ~gI~VssV~p--gSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDL  218 (548)
                      .+++|..|.+  ++||+++| |+.||+|++|||.++.++++.++.++++.. +..+.+.+.|....
T Consensus        44 ~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng~~v~~~~~~dl~~~l~~~-g~~v~l~v~R~g~~  107 (118)
T 2yub_A           44 TTVQVKEVNRMHISPNNRNA-IHPGDRILEINGTPVRTLRVEEVEDAIKQT-SQTLQLLIEHDPVP  107 (118)
T ss_dssp             CEEEEEECCTTTSCTTHHHH-CCTTCCEEEESSSBTTTSCHHHHHHHHHCC-SSCEEEEEEECSSC
T ss_pred             CcEEEEEecCCCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHhC-CCEEEEEEEECCEE
Confidence            3689999999  99999999 999999999999999999888999999987 77899999886543

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=98.36  E-value=1.1e-06  Score=93.10  Aligned_cols=75  Identities=25%  Similarity=0.370  Sum_probs=56.3

Q ss_pred             CCceEEEEEeCCCCCC-CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcc
Q psy6405          62 GNSVGITLAGGSDYES-KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAG  139 (548)
Q Consensus        62 ~~GLGfsIagG~d~~~-~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkg  139 (548)
                      ..||||++....+... -.++|..|.++|||+++| |++||+|++|||++|.+++....+..  ++.+++|++.|.+..
T Consensus        73 ~~G~~~~l~~~~~~~~~~~~~V~~V~~gsPA~~AG-L~~GD~I~~InG~~v~~~~~~~~l~~--~g~~v~l~v~R~g~~  148 (403)
T 3k50_A           73 SYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKVESELLQG--STRQLQIGVYKEVVG  148 (403)
T ss_dssp             BCSEEEEEEECTTCSSCEEEEEEEECTTSHHHHTT-CCTTCEEEEETTBCBCTTTGGGGTSC--SCEEEEEEEEEEEC-
T ss_pred             ccceEEEEEEcCCCCcceeEEEEEeCCCChHHHcC-CCCCCEEEEECCEEccchhHHHHhhC--CCCEEEEEEEeCCcc
Confidence            5678888775432111 137899999999999999 99999999999999999863222222  577799999997764

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.33  E-value=5.6e-07  Score=94.39  Aligned_cols=91  Identities=21%  Similarity=0.246  Sum_probs=72.7

Q ss_pred             CCCeEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-
Q psy6405         126 GPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-  203 (548)
Q Consensus       126 g~~VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-  203 (548)
                      .....|++.|. +.++||+|.+.... ....+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++.. 
T Consensus       203 ~~~~~V~i~k~~ge~lG~~i~~~~~g-~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~  281 (388)
T 3suz_A          203 ENCKELQLEKHKGEILGVVVVESGWG-SILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLK  281 (388)
T ss_dssp             SCCEEEEECCCSSCCCCCCCBCC----CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCT
T ss_pred             ccceEEEEECCCCCceeEEEEecCCC-CcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhcc
Confidence            34567888875 78899999874321 1123588999999999999999999999999999999999988999999887 


Q ss_pred             CCCceeEEEEeccc
Q psy6405         204 NDGTIQDIKALGYD  217 (548)
Q Consensus       204 ~g~~V~LlV~RilD  217 (548)
                      .+..+.+.+.|...
T Consensus       282 ~~~~v~l~v~r~~~  295 (388)
T 3suz_A          282 NQTQVKLNIVSCPP  295 (388)
T ss_dssp             TCSCEEEEEEECCS
T ss_pred             CCCccccccccccc
Confidence            45568998888644

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=98.30  E-value=9.5e-07  Score=91.26  Aligned_cols=70  Identities=26%  Similarity=0.480  Sum_probs=60.8

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHH-HHHhhCCCCeEEEEEecCcceeEEEecCC
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES-LAILKRGPPVEITLIKDGAGLGFSLEGGK  148 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~a-V~~lk~g~~VtVtV~RdGkgLGfSItgg~  148 (548)
                      .+++|..|.++|||+++| |++||+|++|||++|.++.+... +....+++.+.|+|.|+++.+.++++.+.
T Consensus       263 ~G~~V~~V~~~spA~~aG-L~~GDvI~~ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~  333 (345)
T 3stj_A          263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDT  333 (345)
T ss_dssp             SSEEEEEECTTSHHHHHT-CCTTCEECEETTEECSCHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECEE
T ss_pred             ceEEEEEeccCChHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEcc
Confidence            578999999999999999 99999999999999999877664 44445789999999999998888887643

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=98.28  E-value=8.6e-07  Score=91.25  Aligned_cols=69  Identities=23%  Similarity=0.300  Sum_probs=59.6

Q ss_pred             CCeEEEEEcCCChhhhcCCCCC-----------CCEEEEECCeeccCccHHHHH-HHhhCCCCeEEEEEecCcceeEEEe
Q psy6405          78 KEITVHKVISGTPADRDGRLQK-----------GDRILSINGKSMKGLTHKESL-AILKRGPPVEITLIKDGAGLGFSLE  145 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~-----------GDrILaINGv~V~~~s~~~aV-~~lk~g~~VtVtV~RdGkgLGfSIt  145 (548)
                      .+++|..|.++|||+++| |++           ||+|++|||++|.++.+.... ....++++++|+|.|+++.+.++++
T Consensus       251 ~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~~v~~~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~  329 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLYRILDQCKVGDEVTVEVLRGDHKEKISVT  329 (348)
T ss_dssp             SSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTBCCSSSHHHHHHHTTCCTTCEEEEEEECSSSEEEEEEE
T ss_pred             ceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECCEEeCCHHHHHHHHHhCCCcCEEEEEEEECCEEEEEEEE
Confidence            589999999999999999 999           999999999999999776643 3445688999999999988887776


Q ss_pred             cC
Q psy6405         146 GG  147 (548)
Q Consensus       146 gg  147 (548)
                      ..
T Consensus       330 l~  331 (348)
T 3qo6_A          330 LE  331 (348)
T ss_dssp             CE
T ss_pred             Ec
Confidence            53

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=98.24  E-value=1.8e-06  Score=87.61  Aligned_cols=69  Identities=22%  Similarity=0.350  Sum_probs=59.1

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHH-HHhhCCCCeEEEEEecCcceeEEEecC
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL-AILKRGPPVEITLIKDGAGLGFSLEGG  147 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV-~~lk~g~~VtVtV~RdGkgLGfSItgg  147 (548)
                      .+++|..|.++|||+++| |++||+|++|||+++.++.....+ ....++.++.|+|.|+++.+.++++..
T Consensus       244 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~  313 (318)
T 1te0_A          244 QGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQ  313 (318)
T ss_dssp             CCEEEEEECTTSTTTTTC-CCTTCCEEEETTEECCCHHHHHHHHHTSCTTCEEEEEEESSSCEEEEEEECE
T ss_pred             CcEEEEEeCCCChHHHCC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEc
Confidence            579999999999999999 999999999999999988766543 333578899999999998888887654

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.22  E-value=6.5e-06  Score=78.87  Aligned_cols=96  Identities=17%  Similarity=0.150  Sum_probs=67.4

Q ss_pred             CeEEEEEeeCC---CCCceEEEEEeCCC--CCCCCeEEEEEcCCChhhhcCCCCC-CCEEEEECCeeccCccHHHHHHHh
Q psy6405          50 EVSVVVLHRDL---PGNSVGITLAGGSD--YESKEITVHKVISGTPADRDGRLQK-GDRILSINGKSMKGLTHKESLAIL  123 (548)
Q Consensus        50 d~~tV~L~Kd~---~~~GLGfsIagG~d--~~~~gVvVs~V~pGSPAaqAGrLq~-GDrILaINGv~V~~~s~~~aV~~l  123 (548)
                      ....+.+....   ....+|+++..-..  ....+++|..|.++|||+++| |++ ||+|++|||. +.++.....+...
T Consensus        79 ~~~~v~l~p~~~~~~~~~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aG-l~~~GD~I~~ing~-v~~~~~l~~~l~~  156 (209)
T 3rle_A           79 ELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAG-LRPHSDYIIGADTV-MNESEDLFSLIET  156 (209)
T ss_dssp             CEEEEEECCCSSSSSSSSSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHT-CCTTTEEEEEESSC-CCSSSCHHHHHHH
T ss_pred             eEEEEEEcccccccccCccceEEeecChhHccccceEEEEeCCCChHHHCC-CCCCCCEEEECCCE-eCCHHHHHHHHHh
Confidence            34455553221   13468888763211  112578999999999999999 999 9999999998 8888766643333


Q ss_pred             hCCCCeEEEEEecCcc--eeEEEecC
Q psy6405         124 KRGPPVEITLIKDGAG--LGFSLEGG  147 (548)
Q Consensus       124 k~g~~VtVtV~RdGkg--LGfSItgg  147 (548)
                      .++.++.++|.|.+..  +.+++++.
T Consensus       157 ~~g~~v~l~v~r~~~~~~~~v~l~p~  182 (209)
T 3rle_A          157 HEAKPLKLYVYNTDTDNCREVIITPN  182 (209)
T ss_dssp             TTTSCEEEEEEETTTTEEEEEEECCC
T ss_pred             CCCCeEEEEEEECCceEEEEEEEEec
Confidence            3788999999997643  56666654

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=98.17  E-value=3.3e-06  Score=75.44  Aligned_cols=64  Identities=27%  Similarity=0.402  Sum_probs=52.2

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHH-hhCCCCeEEEEEecCcceeEEEe
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAI-LKRGPPVEITLIKDGAGLGFSLE  145 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~-lk~g~~VtVtV~RdGkgLGfSIt  145 (548)
                      .+++|..|.++|||+++  |++||+|++|||+++.++.....+.. ...+..+.|+| |+++ +.+++.
T Consensus        25 ~gv~V~~V~~~spA~~a--L~~GD~Il~InG~~v~~~~dl~~~l~~~~~g~~v~l~V-R~g~-~~v~l~   89 (125)
T 2hga_A           25 DGVQIDSVVPGSPASKV--LTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITT-DQGT-FHLKTG   89 (125)
T ss_dssp             CCEEEEEECSSSGGGGT--SCTTCEEEEETTEECSSHHHHHHHHTTCCTTCEEEEEE-TTEE-EEEECC
T ss_pred             CceEEEEECCCChHHHh--cCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEE-ECCE-EEEEEe
Confidence            57999999999999988  99999999999999999976664333 45678899999 9877 444443

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=98.08  E-value=6.8e-06  Score=83.82  Aligned_cols=66  Identities=24%  Similarity=0.435  Sum_probs=56.6

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEEec
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEG  146 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItg  146 (548)
                      .+++|..|.++|||+++| |++||+|++|||+++.++.+...  .+..+..+.|+|.|+++.+.++++.
T Consensus       256 ~gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~~~~~l~~--~l~~~~~v~l~v~R~g~~~~~~v~~  321 (325)
T 1lcy_A          256 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNAEDVYE--AVRTQSQLAVQIRRGRETLTLYVTP  321 (325)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSHHHHHH--HHTTCSSEEEEEEETTEEEEEEECC
T ss_pred             CCeEEEEeCcCChHHHCC-CCCCCEEEEECCEEcCCHHHHHH--HHhCCCeEEEEEEECCEEEEEEEEE
Confidence            589999999999999999 99999999999999998865543  3344788999999999888887764

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.04  E-value=1.6e-06  Score=73.10  Aligned_cols=62  Identities=6%  Similarity=0.053  Sum_probs=52.4

Q ss_pred             CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEeccccCCC
Q psy6405         156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALGYDLNSL  221 (548)
Q Consensus       156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~RilDLr~~  221 (548)
                      +++|..|.++|||++ | |++||+|++|||.++.++.  ++..+++.. ++.++.+.+.|.......
T Consensus         2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG~~v~~~~--~l~~~l~~~~~g~~v~l~v~R~g~~~~~   64 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-K-IEVGDKIISADGKNYQSAE--KLIDYISSKKAGDKVTLKIEREEKEKRV   64 (91)
T ss_dssp             CSSCCCCCCSSCCSS-C-CCSSCEEEEETTBCCSSHH--HHHHHHSSCCSSCEECEEEESSSCEECC
T ss_pred             ceEEEEECCCChHHH-c-CCCCCEEEEECCEECCCHH--HHHHHHHcCCCCCEEEEEEEECCEEEEE
Confidence            477889999999999 8 9999999999999998764  888888776 578899999997654443

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=98.01  E-value=6.1e-06  Score=68.18  Aligned_cols=59  Identities=17%  Similarity=0.191  Sum_probs=50.9

Q ss_pred             eEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEecccc
Q psy6405         157 LTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDL  218 (548)
Q Consensus       157 I~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDL  218 (548)
                      +.|..|.++|||+++| |+.||+|++|||.++.++.  ++...++...+..+.+.+.|....
T Consensus         6 ~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~--~~~~~l~~~~g~~v~l~v~R~g~~   64 (91)
T 2zpm_A            6 PVLENVQPNSAASXAG-LQAGDRIVXVDGQPLTQWV--TFVMLVRDNPGXSLALEIERQGSP   64 (91)
T ss_dssp             CBCSEECTTSHHHHTT-CCTTCEEEEETTEECCCHH--HHHHHHHHCTTCCEEEEEEETTEE
T ss_pred             eEEEEECCCChHHhcC-CCCCCEEEEECCeEcCCHH--HHHHHHhcCCCCeEEEEEEECCeE
Confidence            5688899999999999 9999999999999999765  888888876677889999886543

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.00  E-value=9.1e-06  Score=68.73  Aligned_cols=57  Identities=12%  Similarity=0.049  Sum_probs=49.2

Q ss_pred             eEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC-CceeEEEEecc
Q psy6405         157 LTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND-GTIQDIKALGY  216 (548)
Q Consensus       157 I~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g-~~V~LlV~Ril  216 (548)
                      .+|..|.++|||+++| |+.||+|++|||+.+.++.  ++...+....+ ..+.+.+.|..
T Consensus         4 p~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~--d~~~~l~~~~~~~~v~l~v~R~g   61 (95)
T 3id1_A            4 PVVGEIAANSIAAEAQ-IAPGTELKAVDGIETPDWD--AVRLQLVDKIGDESTTITVAPFG   61 (95)
T ss_dssp             CBEEEECTTSHHHHTT-CCTTCEEEEETTEECSSHH--HHHHHHHHTTTCSEEEEEEECTT
T ss_pred             CEEEeeCCCCHHHHcC-CCCCCEEEEECCEECCCHH--HHHHHHHHhcCCCcEEEEEEECC
Confidence            4688999999999999 9999999999999999876  78788876544 67888888865

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=97.94  E-value=9.1e-06  Score=72.90  Aligned_cols=59  Identities=15%  Similarity=0.052  Sum_probs=51.3

Q ss_pred             CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEecccc
Q psy6405         156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALGYDL  218 (548)
Q Consensus       156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~RilDL  218 (548)
                      ++.|..|.++|||+ +| |+.||+|++|||.++.++.  ++...+... .+.++.+.+.|....
T Consensus        58 g~~V~~V~~~spA~-aG-L~~GD~I~~inG~~v~~~~--~l~~~l~~~~~g~~v~l~v~R~g~~  117 (134)
T 2l97_A           58 GVIVRSVQSNMPAN-GH-LEKYDVITKVDDKEIASST--DLQSALYNHSIGDTIKITYYRNGKE  117 (134)
T ss_dssp             CEEEEECSTTSGGG-TT-SCSSCEEEEETTEECCCHH--HHHHHHHHSSTTCEEEEEEEETTEE
T ss_pred             CEEEEEECCCCchH-HC-CCCCCEEEEECCEEcCCHH--HHHHHHHhCCCCCEEEEEEEECCEE
Confidence            68899999999999 99 9999999999999999875  777888776 577899999887543

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=97.93  E-value=6.1e-06  Score=69.60  Aligned_cols=61  Identities=16%  Similarity=0.198  Sum_probs=52.3

Q ss_pred             CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEeccccC
Q psy6405         155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALGYDLN  219 (548)
Q Consensus       155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~RilDLr  219 (548)
                      .+++|..|.++|||++ | |++||+|++|||.++.++.  ++..+++.. .+..+.+.+.|.....
T Consensus         5 ~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG~~v~~~~--~l~~~l~~~~~g~~v~l~v~R~g~~~   66 (94)
T 2kl1_A            5 KGVYVMSVLPNMPAAG-R-LEAGDRIAAIDGQPINTSE--QIVSYVREKQAGDRVRVTFIRDRKQH   66 (94)
T ss_dssp             CCEECCCCCTTSTTBT-T-BCTTCEEEEETTBCCCCHH--HHHHHHHHSCTTCCEEEEEEETTEEE
T ss_pred             CcEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCHH--HHHHHHHhCCCCCEEEEEEEECCEEE
Confidence            3688999999999999 8 9999999999999998764  788888876 5789999999976543

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=97.92  E-value=9.3e-06  Score=67.20  Aligned_cols=59  Identities=15%  Similarity=0.089  Sum_probs=48.8

Q ss_pred             CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEeccc
Q psy6405         156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALGYD  217 (548)
Q Consensus       156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~RilD  217 (548)
                      ++.|..+.++|+|+++| |++||+|++|||.++.++.  ++.++++.. .+..+.+.+.|...
T Consensus        20 G~~V~~~~~~s~A~~aG-l~~GD~I~~ing~~v~~~~--d~~~~~~~~~~g~~v~l~v~R~g~   79 (87)
T 2i6v_A           20 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEMSLTVERDGQ   79 (87)
T ss_dssp             EEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTCHH--HHHHHHHTGGGCSEEEEEEEETTE
T ss_pred             EEEEEeCCCCCHHHHCC-CCCCCEEEEECCEECCCHH--HHHHHHHhcCCCCEEEEEEEECCE
Confidence            46677788888999999 9999999999999999876  677777764 46788888888653

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=97.91  E-value=1.4e-05  Score=68.85  Aligned_cols=60  Identities=20%  Similarity=0.339  Sum_probs=51.1

Q ss_pred             CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccccC
Q psy6405         155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDLN  219 (548)
Q Consensus       155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDLr  219 (548)
                      .++.|..|.++|||+++| |++||+|++|||.++.++  .++...++.  +..+.+.+.|.....
T Consensus        35 ~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~~~~~l~~--~~~v~l~v~R~g~~~   94 (113)
T 2pzd_A           35 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNA--EDVYEAVRT--QSQLAVQIRRGRETL   94 (113)
T ss_dssp             SCEEEEEEBTTSHHHHHT-CCTTCEEEEETTEECCSH--HHHHHHHHH--CSSEEEEEEETTEEE
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHhC--CCeEEEEEEECCEEE
Confidence            368999999999999999 999999999999999864  478888876  578889998875443

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=97.90  E-value=1.5e-05  Score=67.66  Aligned_cols=61  Identities=18%  Similarity=0.079  Sum_probs=51.7

Q ss_pred             CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEeccccC
Q psy6405         155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALGYDLN  219 (548)
Q Consensus       155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~RilDLr  219 (548)
                      .+++|..|.++|||+. | |++||+|++|||.++.++.  ++.+.+... .+..+.+.+.|.....
T Consensus         7 ~Gv~V~~V~~~spA~~-G-L~~GD~I~~Ing~~v~~~~--dl~~~l~~~~~g~~v~l~v~R~g~~~   68 (100)
T 3i18_A            7 DGVYVMSVKDDVPAAD-V-LHAGDLITEIDGNAFKSSQ--EFIDYIHSKKVGDTVKINYKHGDKNE   68 (100)
T ss_dssp             CCEEEEEECTTSGGGG-T-CCTTCEEEEETTBCCSSHH--HHHHHHHTSCTTCEEEEEEEETTEEE
T ss_pred             CCEEEEEeCCCCchHH-C-CCCCCEEEEECCEECCCHH--HHHHHHHhCCCCCEEEEEEEECCEEE
Confidence            3799999999999995 8 9999999999999999875  788888864 4678899998876543

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=97.90  E-value=2.2e-05  Score=81.86  Aligned_cols=74  Identities=27%  Similarity=0.361  Sum_probs=61.8

Q ss_pred             ceeEEEecC-CCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccc
Q psy6405         139 GLGFSLEGG-KDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYD  217 (548)
Q Consensus       139 gLGfSItgg-~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilD  217 (548)
                      ++|+.+... ...    .+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++...+..+.+.+.|...
T Consensus        86 giG~~~~~~~~~~----~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~  160 (388)
T 1fc6_A           86 GVGLEITYDGGSG----KDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA  160 (388)
T ss_dssp             BCSEEEEECTTCS----SCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             EEEEEEEEeecCC----CcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence            467777643 111    258999999999999999 99999999999999999988899999987778889999988654

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=97.86  E-value=2.7e-05  Score=82.69  Aligned_cols=68  Identities=19%  Similarity=0.416  Sum_probs=56.0

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEEecC
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGG  147 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg  147 (548)
                      .+++|..|.++|||+++| |++||+|++|||+++.++.....+... .+..+.++|.|++..+.+++...
T Consensus       363 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~l~~-~~~~v~l~v~R~g~~~~~~~~~~  430 (436)
T 4a8c_A          363 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSIAEMRKVLAA-KPAIIALQIVRGNESIYLLMRLE  430 (436)
T ss_pred             CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHh-CCCeEEEEEEECCEEEEEEEEec
Confidence            479999999999999999 999999999999999988665543333 34478999999988777777643

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=97.84  E-value=2.4e-05  Score=83.56  Aligned_cols=65  Identities=15%  Similarity=0.256  Sum_probs=53.8

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEE
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSL  144 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSI  144 (548)
                      .+++|..|.++|||+++| |++||+|++|||+++.++.+...+... .+..+.++|.|++..+-+.+
T Consensus       386 ~Gv~V~~V~~gspA~~aG-L~~GD~I~~Vng~~v~~~~~~~~~l~~-~~~~v~l~v~R~g~~~~v~l  450 (451)
T 3pv2_A          386 IGVQVVGASENSAGWRAG-IRPGDIIISANKKPVTDVKSLQTIAQE-KKKELLVQVLRGPGSMYLLV  450 (451)
T ss_dssp             EEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSHHHHHHHTTS-SCSCEEEEEEETTEEEEEEE
T ss_pred             CceEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHHhc-CCCeEEEEEEECCEEEEEEe
Confidence            478999999999999999 999999999999999988665543222 56789999999887765554

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.83  E-value=1.3e-05  Score=92.04  Aligned_cols=81  Identities=17%  Similarity=0.193  Sum_probs=63.0

Q ss_pred             CCCceEEEEEeCCCCCCCCeEEEEEcCC--------ChhhhcCC-CCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEE
Q psy6405          61 PGNSVGITLAGGSDYESKEITVHKVISG--------TPADRDGR-LQKGDRILSINGKSMKGLTHKESLAILKRGPPVEI  131 (548)
Q Consensus        61 ~~~GLGfsIagG~d~~~~gVvVs~V~pG--------SPAaqAGr-Lq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtV  131 (548)
                      ...++|+.+...    +++++|..|.++        |||+++|. |+ ||+|++|||+++..+........-..|..+.|
T Consensus       735 ~~~g~G~~~~~~----~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~~~~~~~~~~~g~~v~l  809 (1045)
T 1k32_A          735 RSGRIACDFKLD----GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGSNIYRVLSEKAGTSARI  809 (1045)
T ss_dssp             CCCBCSEEEEEE----TTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTBCHHHHHHTTTTSEEEE
T ss_pred             ccceecEEEEEe----CCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchhhHHHhhcCCCCCEEEE
Confidence            356899888742    358999999998        99999994 89 99999999999999875443334456888999


Q ss_pred             EEEecCc-ceeEEEec
Q psy6405         132 TLIKDGA-GLGFSLEG  146 (548)
Q Consensus       132 tV~RdGk-gLGfSItg  146 (548)
                      +|.|.+. .+.++|++
T Consensus       810 ~v~r~~~~~~~~~~~~  825 (1045)
T 1k32_A          810 RLSGKGGDKRDLMIDI  825 (1045)
T ss_dssp             EEECSSSCEEEEEEEC
T ss_pred             EEECCCCceEEEEEEE
Confidence            9999763 34566653

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=97.79  E-value=4e-05  Score=65.63  Aligned_cols=59  Identities=15%  Similarity=0.089  Sum_probs=48.4

Q ss_pred             CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEeccc
Q psy6405         156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALGYD  217 (548)
Q Consensus       156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~RilD  217 (548)
                      ++.|..+.++|+|+++| |++||+|++|||.++.++.  ++.++++.. ++..+.+.+.|...
T Consensus        38 G~~V~~~~pas~A~~aG-l~~GDvI~~ing~~v~~~~--d~~~~~~~~~~g~~v~l~v~R~g~   97 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEMSLTVERDGQ   97 (105)
T ss_dssp             EEEEEECSCTHHHHHHT-CCTTCEEEEETTEETTSTT--HHHHHHHHHTTCSEEEEEEEETTE
T ss_pred             EEEEecCCCCCHHHHcC-CCCCCEEEEECCEECCCHH--HHHHHHHhcCCCCeEEEEEEECCE
Confidence            35677777888889999 9999999999999999998  666777764 46788888888653

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=97.79  E-value=3.1e-06  Score=86.42  Aligned_cols=68  Identities=24%  Similarity=0.411  Sum_probs=0.0

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEEecCC
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGK  148 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg~  148 (548)
                      .+++|..|.++|||+++| |++||+|++|||+++.++.....+  +..+..+.|+|.|+++.+.+++++..
T Consensus       254 ~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~--l~~~~~v~l~v~R~g~~~~~~v~p~~  321 (332)
T 3num_A          254 SGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVVSANDVSDV--IKRESTLNMVVRRGNEDIMITVIPEE  321 (332)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             CceEEEEeccCCChHHcC-CCCCCEEEEECCEECCCHHHHHHH--HhCCCeEEEEEEECCEEEEEEEEEee
Confidence            478999999999999999 999999999999999887665432  33478899999999988888887643

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=97.72  E-value=4.6e-05  Score=65.58  Aligned_cols=59  Identities=19%  Similarity=0.290  Sum_probs=49.7

Q ss_pred             CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEecccc
Q psy6405         155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDL  218 (548)
Q Consensus       155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDL  218 (548)
                      .+++|..|.++|||+++| |++||+|++|||.++.++.  ++...++.  +..+.+.+.|....
T Consensus        35 ~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~--~~~~~l~~--g~~v~l~v~R~g~~   93 (112)
T 2p3w_A           35 SGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVDSS--ELQEAVLT--ESPLLLEVRRGNDD   93 (112)
T ss_dssp             SSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSHH--HHHHHHHH--CSSEEEEEEETTEE
T ss_pred             CCeEEEEECCCChHHHCC-CCCCCEEEEECCEECCCHH--HHHHHHhC--CCeEEEEEEECCEE
Confidence            368999999999999999 9999999999999998754  77777743  67888888886543

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=97.53  E-value=5.3e-05  Score=80.18  Aligned_cols=75  Identities=20%  Similarity=0.175  Sum_probs=56.5

Q ss_pred             CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEecc
Q psy6405         137 GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGY  216 (548)
Q Consensus       137 GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ril  216 (548)
                      ..++++++....... ....++|..|.++|||+++| |++||+|++|||+++.++.   +.++++. ++.++.+.+.|..
T Consensus        73 ~~G~~~~l~~~~~~~-~~~~~~V~~V~~gsPA~~AG-L~~GD~I~~InG~~v~~~~---~~~~l~~-~g~~v~l~v~R~g  146 (403)
T 3k50_A           73 SYGFDYTLYKVLDND-TAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKV---ESELLQG-STRQLQIGVYKEV  146 (403)
T ss_dssp             BCSEEEEEEECTTCS-SCEEEEEEEECTTSHHHHTT-CCTTCEEEEETTBCBCTTT---GGGGTSC-SCEEEEEEEEEEE
T ss_pred             ccceEEEEEEcCCCC-cceeEEEEEeCCCChHHHcC-CCCCCEEEEECCEEccchh---HHHHhhC-CCCEEEEEEEeCC
Confidence            345666665433210 00126899999999999999 9999999999999999986   5567777 6788999998865


Q ss_pred             c
Q psy6405         217 D  217 (548)
Q Consensus       217 D  217 (548)
                      .
T Consensus       147 ~  147 (403)
T 3k50_A          147 V  147 (403)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=97.46  E-value=0.00013  Score=73.89  Aligned_cols=61  Identities=18%  Similarity=0.261  Sum_probs=53.1

Q ss_pred             CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHH-cCCCceeEEEEecccc
Q psy6405         155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK-LNDGTIQDIKALGYDL  218 (548)
Q Consensus       155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs-~~g~~V~LlV~RilDL  218 (548)
                      .++.|..|.++|||+++| |++||+|++|||+++.++.  ++.++++. .++.++.+.+.|....
T Consensus       244 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~--~l~~~l~~~~~g~~v~l~v~R~g~~  305 (318)
T 1te0_A          244 QGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAISAL--ETMDQVAEIRPGSVIPVVVMRDDKQ  305 (318)
T ss_dssp             CCEEEEEECTTSTTTTTC-CCTTCCEEEETTEECCCHH--HHHHHHHTSCTTCEEEEEEESSSCE
T ss_pred             CcEEEEEeCCCChHHHCC-CCCCCEEEEECCEEcCCHH--HHHHHHHhcCCCCEEEEEEEECCEE
Confidence            478999999999999999 9999999999999998765  78888886 4578899999987543

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=97.45  E-value=0.00023  Score=72.05  Aligned_cols=60  Identities=12%  Similarity=0.194  Sum_probs=51.6

Q ss_pred             CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEe-ccc
Q psy6405         155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKAL-GYD  217 (548)
Q Consensus       155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~R-ilD  217 (548)
                      .++.|..|.++|||+++| |+.||+|++|||+++.++.  ++...+... ++.++.+.+.| ...
T Consensus       242 ~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~--~l~~~l~~~~~g~~v~l~v~R~~g~  303 (324)
T 1y8t_A          242 LGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSAD--ALVAAVRSKAPGATVALTFQDPSGG  303 (324)
T ss_dssp             SSEEEEEECTTSTTTTTT-CCTTCEEEEETTEECCSHH--HHHHHHHTSCTTCEEEEEEECSSCC
T ss_pred             CceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCHH--HHHHHHHhcCCCCEEEEEEEECCCC
Confidence            368999999999999999 9999999999999999875  777788763 57789999988 543

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=97.42  E-value=0.00015  Score=74.91  Aligned_cols=62  Identities=21%  Similarity=0.231  Sum_probs=53.9

Q ss_pred             CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEeccccC
Q psy6405         155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALGYDLN  219 (548)
Q Consensus       155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~RilDLr  219 (548)
                      .+++|..|.++|||+++| |++||+|++|||+.+.++.  ++..+++.. ++.++.+.+.|.....
T Consensus       263 ~G~~V~~V~~~spA~~aG-L~~GDvI~~ing~~v~~~~--~l~~~l~~~~~g~~v~l~v~R~g~~~  325 (345)
T 3stj_A          263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFA--ELRSRIATTEPGTKVKLGLLRNGKPL  325 (345)
T ss_dssp             SSEEEEEECTTSHHHHHT-CCTTCEECEETTEECSCHH--HHHHHHHTSCTTCEEEEEEEETTEEE
T ss_pred             ceEEEEEeccCChHHHcC-CCCCCEEEEECCEECCCHH--HHHHHHHhcCCCCEEEEEEEECCEEE
Confidence            478999999999999999 9999999999999999765  788888764 5789999999976543

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=97.34  E-value=0.00025  Score=63.18  Aligned_cols=57  Identities=21%  Similarity=0.204  Sum_probs=48.6

Q ss_pred             CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHH-cCCCceeEEEEeccc
Q psy6405         156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK-LNDGTIQDIKALGYD  217 (548)
Q Consensus       156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs-~~g~~V~LlV~RilD  217 (548)
                      ++.|..|.++|||+++  |+.||+|++|||.++.++.  ++...++. ..+..+.+.+ |...
T Consensus        26 gv~V~~V~~~spA~~a--L~~GD~Il~InG~~v~~~~--dl~~~l~~~~~g~~v~l~V-R~g~   83 (125)
T 2hga_A           26 GVQIDSVVPGSPASKV--LTPGLVIESINGMPTSNLT--TYSAALKTISVGEVINITT-DQGT   83 (125)
T ss_dssp             CEEEEEECSSSGGGGT--SCTTCEEEEETTEECSSHH--HHHHHHTTCCTTCEEEEEE-TTEE
T ss_pred             ceEEEEECCCChHHHh--cCCCCEEEEECCEEcCCHH--HHHHHHHhcCCCCEEEEEE-ECCE
Confidence            6899999999999998  9999999999999999875  77777774 3467888888 7654

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=97.34  E-value=0.00023  Score=73.13  Aligned_cols=64  Identities=23%  Similarity=0.271  Sum_probs=54.8

Q ss_pred             CCCCeEEEEeccCChhhhcCCCCC-----------CCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEeccccC
Q psy6405         153 GDQPLTVKKIFTGGCAEKNGQLKA-----------GDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALGYDLN  219 (548)
Q Consensus       153 G~~gI~VssV~pgSpAekaGrLq~-----------GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~RilDLr  219 (548)
                      +..+++|..|.++|||+++| |+.           ||+|++|||+++.++.  ++...+... .+.++++.+.|.....
T Consensus       249 ~~~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~~v~~~~--dl~~~l~~~~~g~~v~l~v~R~g~~~  324 (348)
T 3qo6_A          249 GVSGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGTKVSNGS--DLYRILDQCKVGDEVTVEVLRGDHKE  324 (348)
T ss_dssp             TCSSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTBCCSSSH--HHHHHHTTCCTTCEEEEEEECSSSEE
T ss_pred             CCceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECCEEeCCHH--HHHHHHHhCCCcCEEEEEEEECCEEE
Confidence            44689999999999999999 999           9999999999999986  777888653 4778999999876543

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=97.26  E-value=0.00022  Score=72.67  Aligned_cols=60  Identities=20%  Similarity=0.355  Sum_probs=51.4

Q ss_pred             CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccccC
Q psy6405         155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDLN  219 (548)
Q Consensus       155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDLr  219 (548)
                      .++.|..|.++|||+++| |+.||+|++|||+++.++.  ++.+.++.  +.++.+.+.|.....
T Consensus       256 ~gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~~~~--~l~~~l~~--~~~v~l~v~R~g~~~  315 (325)
T 1lcy_A          256 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNAE--DVYEAVRT--QSQLAVQIRRGRETL  315 (325)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSHH--HHHHHHTT--CSSEEEEEEETTEEE
T ss_pred             CCeEEEEeCcCChHHHCC-CCCCCEEEEECCEEcCCHH--HHHHHHhC--CCeEEEEEEECCEEE
Confidence            478999999999999999 9999999999999998765  77787765  468899998876543

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=97.25  E-value=0.00027  Score=78.27  Aligned_cols=62  Identities=24%  Similarity=0.350  Sum_probs=51.4

Q ss_pred             CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHH-cCCCceeEEEEeccccCCC
Q psy6405         156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK-LNDGTIQDIKALGYDLNSL  221 (548)
Q Consensus       156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs-~~g~~V~LlV~RilDLr~~  221 (548)
                      ++.|..|.++|||+++| |++||+|++|||.+|. ..  ++.++++. .++.+|.++|.|.......
T Consensus       497 gv~V~~V~~~spA~~AG-L~~GD~I~aInG~~v~-~~--~l~~~l~~~~~g~~v~l~v~R~g~~~~~  559 (597)
T 4fgm_A          497 GLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQAT-EQ--SVKRILERYIPGDTVTIHAFRRDELMTL  559 (597)
T ss_dssp             EEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC-TT--THHHHHTTCCTTCEEEEEEEETTEEEEE
T ss_pred             eEEEEEeCCCChHHHCC-CCCCCEEEEECCEECC-HH--HHHHHHHhcCCCCEEEEEEEECCEEEEE
Confidence            58999999999999999 9999999999999994 33  56677765 3578999999998765433

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.18  E-value=5.7e-05  Score=80.67  Aligned_cols=65  Identities=23%  Similarity=0.403  Sum_probs=0.0

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEE
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSL  144 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSI  144 (548)
                      .+++|..|.++|||+++| |++||+|++|||+++.++.+...+..... ..+.|+|.|++..+.+++
T Consensus       383 ~gv~V~~V~~gspA~~aG-L~~GDiI~~vng~~v~~~~~l~~~l~~~~-~~v~l~v~R~g~~~~~~l  447 (448)
T 1ky9_A          383 QGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKNIAELRKVLDSKP-SVLALNIQRGDSTIYLLM  447 (448)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             CeEEEEEecCCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHcCC-CeEEEEEEECCEEEEEEe
Confidence            578999999999999999 99999999999999988765543322222 378888888877655443

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=96.92  E-value=0.00014  Score=74.16  Aligned_cols=62  Identities=21%  Similarity=0.312  Sum_probs=0.0

Q ss_pred             CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccccCCC
Q psy6405         155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDLNSL  221 (548)
Q Consensus       155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDLr~~  221 (548)
                      .+++|..|.++|||+++| |++||+|++|||+++.++.  ++.+.++.  +..+++.+.|.......
T Consensus       254 ~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~--~~~~~l~~--~~~v~l~v~R~g~~~~~  315 (332)
T 3num_A          254 SGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVVSAN--DVSDVIKR--ESTLNMVVRRGNEDIMI  315 (332)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             CceEEEEeccCCChHHcC-CCCCCEEEEECCEECCCHH--HHHHHHhC--CCeEEEEEEECCEEEEE
Confidence            368899999999999999 9999999999999998776  67777765  56788888887654433

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=96.09  E-value=0.0079  Score=68.96  Aligned_cols=58  Identities=17%  Similarity=0.075  Sum_probs=51.7

Q ss_pred             CeEEEEeccC--------ChhhhcCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEecc
Q psy6405         156 PLTVKKIFTG--------GCAEKNGQ-LKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGY  216 (548)
Q Consensus       156 gI~VssV~pg--------SpAekaGr-Lq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ril  216 (548)
                      +++|..|.++        |||+++|. |+ ||+|++|||+++.++.  ++..++++..+.++.+.+.|..
T Consensus       749 ~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~~v~l~v~r~~  815 (1045)
T 1k32_A          749 HYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGTSARIRLSGKG  815 (1045)
T ss_dssp             EEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTSEEEEEEECSS
T ss_pred             EEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCCEEEEEEECCC
Confidence            4889999987        99999994 89 9999999999999987  7889999888889999998854

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=93.84  E-value=0.081  Score=58.02  Aligned_cols=43  Identities=14%  Similarity=0.250  Sum_probs=39.0

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHH
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA  121 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~  121 (548)
                      .+|+|+.|.++++|...| ++.||+|++|||++|.+..+...+.
T Consensus       415 ~gVvvs~V~~~s~a~~~g-~~~gdiI~~vNg~~V~s~~~l~~~l  457 (539)
T 4fln_A          415 QIVILSQVLANEVNIGYE-DMNNQQVLKFNGIPIRNIHHLAHLI  457 (539)
T ss_dssp             CCEEEEEECCCGGGTTCS-SCCSEEEEEETTEECCSHHHHHHHH
T ss_pred             eEEEEEEecCCchhhhcC-CCCCCEEEeECCEEcCCHHHHHHHH
Confidence            479999999999999999 9999999999999999998876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	548
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	4e-21
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	3e-16
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	8e-21
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	9e-17
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	3e-20
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	1e-17
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	4e-20
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	4e-19
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	5e-20
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	6e-17
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	7e-20
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	2e-18
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-19
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	4e-17
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	1e-19
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	7e-17
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	4e-19
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	4e-15
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	4e-19
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	1e-16
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	6e-19
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	7e-18
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	7e-19
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	8e-19
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	1e-18
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	1e-17
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	1e-18
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	3e-17
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	2e-18
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	5e-16
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-18
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	1e-16
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	3e-18
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	8e-17
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	3e-18
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	2e-16
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	4e-18
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	1e-17
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	4e-18
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	2e-17
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	5e-18
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	5e-17
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	5e-18
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-16
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	5e-18
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	1e-17
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	6e-18
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	2e-15
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	6e-18
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-14
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	7e-18
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	6e-16
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	1e-17
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	2e-13
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	1e-17
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-12
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-17
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	4e-17
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	2e-17
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	8e-17
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	3e-17
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	4e-17
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	4e-17
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	7e-14
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	4e-17
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	2e-16
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	1e-16
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	6e-15
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	2e-16
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	2e-11
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	2e-16
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	1e-10
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	3e-16
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	5e-15
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	4e-16
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	1e-13
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	7e-16
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	2e-12
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	7e-16
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	7e-14
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	8e-16
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	3e-15
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	1e-15
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	5e-15
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	1e-15
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	2e-14
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	2e-15
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	2e-14
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	2e-15
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	3e-13
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	2e-15
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	3e-13
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	3e-15
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	7e-15
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	4e-15
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	2e-13
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	5e-15
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	2e-10
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	7e-15
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	1e-14
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	9e-15
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	2e-11
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	9e-15
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	7e-12
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-14
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-14
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	1e-14
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	6e-13
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	2e-14
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	2e-14
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	3e-14
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	6e-14
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	4e-14
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	1e-13
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	3e-13
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	7e-12
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	6e-13
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	1e-12
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	2e-11
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	4e-11
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	1e-09
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	1e-07
d1fc6a3	92	b.36.1.3 (A:157-248) Photosystem II D1 C-terminal	6e-09
d2z9ia1	88	b.36.1.4 (A:227-314) Protease PepD {Mycobacterium	3e-08
d1k32a1	91	b.36.1.3 (A:763-853) Tricorn protease {Archaeon Th	1e-06
d1ky9b2	88	b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-t	2e-05
d1lcya1	100	b.36.1.4 (A:226-325) Mitochondrial serine protease	2e-04
d2i6va1	87	b.36.1.5 (A:219-305) General secretion pathway pro	4e-04
d2hgaa1	103	b.36.1.6 (A:23-125) Uncharacterized protein MTH136	0.003

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.5 bits (214), Expect = 4e-21
 Identities = 38/85 (44%), Positives = 58/85 (68%), Gaps = 1/85 (1%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
            + V +LH++  G  +G +LAGG+D E+K ITVH+V     A ++G +QKG+ +LSINGK
Sbjct: 8   GIHVTILHKE-EGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGK 66

Query: 110 SMKGLTHKESLAILKRGPPVEITLI 134
           S+KG TH ++LAIL++       +I
Sbjct: 67  SLKGTTHHDALAILRQAREPRQAVI 91

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (177), Expect = 3e-16
 Identities = 28/90 (31%), Positives = 54/90 (60%), Gaps = 4/90 (4%)

Query: 121 AILKRGPPVEITLI--KDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGD 178
           A LK+   + +T++  ++GAGLGFSL GG D    ++ +TV ++F  G A + G ++ G+
Sbjct: 1   ATLKQLDGIHVTILHKEEGAGLGFSLAGGADLE--NKVITVHRVFPNGLASQEGTIQKGN 58

Query: 179 EILTINNVPVTEMSRIEAWSLLKKLNDGTI 208
           E+L+IN   +   +  +A ++L++  +   
Sbjct: 59  EVLSINGKSLKGTTHHDALAILRQAREPRQ 88

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.3 bits (213), Expect = 8e-21
 Identities = 39/105 (37%), Positives = 59/105 (56%)

Query: 105 SINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFT 164
           S +  +        S+          +TL K  AGLGFSLEGGK S  GD+PLT+ +IF 
Sbjct: 7   STDSAASASAASDVSVESTAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFK 66

Query: 165 GGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQ 209
           G  +E++  ++ GDEIL +    +  ++R EAW+++K L DG + 
Sbjct: 67  GAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVT 111

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (183), Expect = 9e-17
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRI 103
              + V  V L +      +G +L GG      +  +T++++  G  +++   +Q GD I
Sbjct: 25  TAEATVCTVTLEKM--SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEI 82

Query: 104 LSINGKSMKGLTHKESLAILKRGPPVEITLI 134
           L + G +M+GLT  E+  I+K  P   +T++
Sbjct: 83  LQLGGTAMQGLTRFEAWNIIKALPDGPVTIV 113

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (206), Expect = 3e-20
 Identities = 31/76 (40%), Positives = 47/76 (61%)

Query: 130 EITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVT 189
            ITL +   GLGFS+ GG  SP GD P+ VK +F  G A ++G+LK GD+I+ +N   + 
Sbjct: 5   SITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLE 64

Query: 190 EMSRIEAWSLLKKLND 205
            ++  EA ++LK+   
Sbjct: 65  GVTHEEAVAILKRTKG 80

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (186), Expect = 1e-17
 Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 5/88 (5%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILSIN 107
           +   + L R    + +G ++ GG      +  I V  V +   A  DGRL++GD+I+++N
Sbjct: 2   QCKSITLERG--PDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVN 59

Query: 108 GKSMKGLTHKESLAILKR-GPPVEITLI 134
           G+S++G+TH+E++AILKR    V + ++
Sbjct: 60  GQSLEGVTHEEAVAILKRTKGTVTLMVL 87

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.1 bits (205), Expect = 4e-20
 Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 9/93 (9%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYE-SKEITVHKVISGTPADRDGRLQKGDRILSIN 107
               V+ + ++     +G+ + GG +      + +H+VI G    +DGRL+ GD+++SIN
Sbjct: 7   PAFRVITVTKE---TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSIN 63

Query: 108 GKSMKGLTHKESLAILKR-----GPPVEITLIK 135
            +SM G++ +E+ +I+ R       P EI  I+
Sbjct: 64  KESMIGVSFEEAKSIITRAKLRSESPWEIAFIR 96

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.4 bits (198), Expect = 4e-19
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 123 LKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILT 182
           L R P   +  +    GLG  + GG +   G   + + ++  GG   K+G+LK GD++++
Sbjct: 3   LDRDPAFRVITVTKETGLGLKILGGINRNEGP-LVYIHEVIPGGDCYKDGRLKPGDQLVS 61

Query: 183 INNVPVTEMSRIEAWSLLKK 202
           IN   +  +S  EA S++ +
Sbjct: 62  INKESMIGVSFEEAKSIITR 81

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.1 bits (205), Expect = 5e-20
 Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 8/97 (8%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
           S  ++V + +     ++GI + GG++       +  +  G  A   G+L+ G  IL +NG
Sbjct: 5   SSGTLVRVKKS--AATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNG 62

Query: 109 KSMKGLTHKESLAILKRGP------PVEITLIKDGAG 139
            +++G  H+E+  I+           ++  + +  +G
Sbjct: 63  LTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFNSG 99

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (182), Expect = 6e-17
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
           + + K  A LG ++EGG ++        +  I  GG A   GQLK G  IL +N + +  
Sbjct: 10  VRVKKSAATLGIAIEGGANT--RQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRG 67

Query: 191 MSRIEAWSLLKK 202
               EA  ++ +
Sbjct: 68  KEHREAARIIAE 79

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (204), Expect = 7e-20
 Identities = 20/77 (25%), Positives = 35/77 (45%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
           G    + L +  +GLG  L  G  +  G   L ++ +  G  A  +G+L  GD IL +N 
Sbjct: 7   GYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNG 66

Query: 186 VPVTEMSRIEAWSLLKK 202
             +  +  + A  L++ 
Sbjct: 67  SSLLGLGYLRAVDLIRH 83

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (195), Expect = 2e-18
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILS 105
           +  V  V L R    + +G+ L  G         + +  ++ G+PA  DGRL  GDRIL 
Sbjct: 6   SGYVFTVELERG--PSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILE 63

Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIKDGAGLGFSLEGGKDS 150
           +NG S+ GL +  ++ +++  G  +   + K        +  G  S
Sbjct: 64  VNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHSGPSS 109

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (204), Expect = 1e-19
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
           +G  +  TL K   G GF++ GG +    D+ L VK +   G A ++G+++ GD I+ IN
Sbjct: 17  KGTFLSTTLKKSNMGFGFTIIGGDE---PDEFLQVKSVIPDGPAAQDGKMETGDVIVYIN 73

Query: 185 NVPVTEMSRIEAWSLLKKLNDGT 207
            V V   +  +   L + +  G 
Sbjct: 74  EVCVLGHTHADVVKLFQSVPIGQ 96

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (185), Expect = 4e-17
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
                 L +       G T+ GG + +   + V  VI   PA +DG+++ GD I+ IN  
Sbjct: 19  TFLSTTLKKS--NMGFGFTIIGGDEPDEF-LQVKSVIPDGPAAQDGKMETGDVIVYINEV 75

Query: 110 SMKGLTHKESLAILK---RGPPVEITLIK 135
            + G TH + + + +    G  V + L +
Sbjct: 76  CVLGHTHADVVKLFQSVPIGQSVNLVLCR 104

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.5 bits (201), Expect = 1e-19
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 5/89 (5%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYE---SKEITVHKVISGTPADRDGRLQKGDRILS 105
           +E + VVL  D P +  G+ L GG       S    V  +   +PA+R G LQ GDR+LS
Sbjct: 7   TETTEVVLCGD-PLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLS 65

Query: 106 INGKSMKGLTHKESLAILKRGPP-VEITL 133
           ING + +  T +E+  +L+      ++ L
Sbjct: 66  INGIATEDGTMEEANQLLRDAALAHKVVL 94

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.8 bits (181), Expect = 7e-17
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 128 PVEITLIKD-GAGLGFSLEGGKDSP-FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
             E+ L  D  +G G  L+GG  +      P  V  I     AE+ G L+ GD +L+IN 
Sbjct: 9   TTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSING 68

Query: 186 VPVTEMSRIEAWSLLKKLNDGT 207
           +   + +  EA  LL+      
Sbjct: 69  IATEDGTMEEANQLLRDAALAH 90

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (199), Expect = 4e-19
 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
           + EV +V L R      +G ++ GGS++    I V  V  G+ A+++G  + GD+IL +N
Sbjct: 6   SGEVRLVSLRRAKAHEGLGFSIRGGSEH-GVGIYVSLVEPGSLAEKEGL-RVGDQILRVN 63

Query: 108 GKSMKGLTHKESLAILKRGPPVEITLIKDG 137
            KS+  +TH E++  LK    + +++   G
Sbjct: 64  DKSLARVTHAEAVKALKGSKKLVLSVYSAG 93

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (169), Expect = 4e-15
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
           V +   K   GLGFS+ GG +       + V  +  G  AEK G L+ GD+IL +N+  +
Sbjct: 12  VSLRRAKAHEGLGFSIRGGSEH---GVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSL 67

Query: 189 TEMSRIEAWSLLKK 202
             ++  EA   LK 
Sbjct: 68  ARVTHAEAVKALKG 81

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.3 bits (198), Expect = 4e-19
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           +E+ L+K   GLGFS+ GG  +    GD  + + KI  GG A+K+G+L+ GD +L +NN 
Sbjct: 3   MEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNT 62

Query: 187 PVTEMSRIEAWSLLKKLND 205
            + ++   EA + LK  +D
Sbjct: 63  NLQDVRHEEAVASLKNTSD 81

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (178), Expect = 1e-16
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 54  VVLHRDLPGNSVGITLAGGSDYESKE----ITVHKVISGTPADRDGRLQKGDRILSINGK 109
           V L +      +G ++AGG   +       I + K+I G  A +DGRLQ GDR+L++N  
Sbjct: 5   VNLLKG--PKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNT 62

Query: 110 SMKGLTHKESLAILKR-GPPVEITLIKDGA 138
           +++ + H+E++A LK     V + + K G+
Sbjct: 63  NLQDVRHEEAVASLKNTSDMVYLKVAKPGS 92

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.5 bits (196), Expect = 6e-19
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 4/90 (4%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
           + +  V L R   G  +GIT++G  +     I +  +  G  A+R G +  GDRIL+IN 
Sbjct: 2   AIIYTVELKRY--GGPLGITISGTEEPFDP-IIISSLTKGGLAERTGAIHIGDRILAINS 58

Query: 109 KSMKGLTHKESLAILKR-GPPVEITLIKDG 137
            S+KG    E++ +L+  G  V + + K  
Sbjct: 59  SSLKGKPLSEAIHLLQMAGETVTLKIKKQT 88

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.8 bits (189), Expect = 7e-18
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 130 EITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVT 189
            + L + G  LG ++ G ++      P+ +  +  GG AE+ G +  GD IL IN+  + 
Sbjct: 6   TVELKRYGGPLGITISGTEE---PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLK 62

Query: 190 EMSRIEAWSLLKKLND 205
                EA  LL+   +
Sbjct: 63  GKPLSEAIHLLQMAGE 78

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (197), Expect = 7e-19
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 8/96 (8%)

Query: 47  GTSEVSVVVLHRDL-----PGNSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQK 99
           G   +  V+L++        G  +G+ + GG   +       + KV  G+ AD  G L+ 
Sbjct: 9   GDRLIGRVILNKRTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRA 68

Query: 100 GDRILSINGKSMKGLTHKESLAILKR-GPPVEITLI 134
           GD +L  NGK + G T++E   I+       ++ +I
Sbjct: 69  GDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEII 104

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (197), Expect = 8e-19
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 122 ILKRGPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEI 180
           IL +      T+ KD GA LG  + GGK +  G     + K+  G  A+  G L+AGDE+
Sbjct: 17  ILNK----RTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEV 72

Query: 181 LTINNVPVTEMSRIEAWSLLKKLNDGT 207
           L  N  P+   +  E ++++ +     
Sbjct: 73  LEWNGKPLPGATNEEVYNIILESKSEP 99

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.7 bits (196), Expect = 1e-18
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 39  GCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQ 98
           G  ++  P       V L R     S+ + L GG D    ++ V  V  G  A+R G + 
Sbjct: 4   GAATMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVV 63

Query: 99  KGDRILSINGKSMKGLTHKESLAILKR-----GPPVEITLIKDG 137
           KGD I++INGK +   T  E+ A L++     G  +++ +    
Sbjct: 64  KGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCP 107

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.0 bits (189), Expect = 1e-17
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
            G  V +  IK    L  +LEGG DSP     + V  ++ GG AE++G +  GDEI+ IN
Sbjct: 15  AGKDVRLLRIKKEGSLDLALEGGVDSP--VGKVVVSAVYEGGAAERHGGVVKGDEIMAIN 72

Query: 185 NVPVTEMSRIEAWSLLKK 202
              VT+ +  EA + L+K
Sbjct: 73  GKIVTDYTLAEAEAALQK 90

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.8 bits (194), Expect = 1e-18
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKE--------ITVHKVISGTPADRDGRLQKGDRIL 104
            V L R+ P  S+GI++ GG    S+         I +  V+  +PA ++G L+ GDRI+
Sbjct: 4   RVELWRE-PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIV 62

Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITL 133
            ++G  ++  +H++++  +++ G PV   +
Sbjct: 63  EVDGMDLRDASHEQAVEAIRKAGNPVVFMV 92

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (184), Expect = 3e-17
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 7/82 (8%)

Query: 128 PVEITLIKD-GAGLGFSLEGGKDSPF------GDQPLTVKKIFTGGCAEKNGQLKAGDEI 180
           P  + L ++    LG S+ GG+            + + +K +     A KNG LK GD I
Sbjct: 2   PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 61

Query: 181 LTINNVPVTEMSRIEAWSLLKK 202
           + ++ + + + S  +A   ++K
Sbjct: 62  VEVDGMDLRDASHEQAVEAIRK 83

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.4 bits (193), Expect = 2e-18
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 47  GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
           G+ +   V + +      +GI++ GG + +   I + K+  G  AD+   L  GD ILS+
Sbjct: 1   GSLQRRRVTVRKA-DAGGLGISIKGGRENKMP-ILISKIFKGLAADQTEALFVGDAILSV 58

Query: 107 NGKSMKGLTHKESLAILKR-GPPVEITL 133
           NG+ +   TH E++  LK+ G  V + +
Sbjct: 59  NGEDLSSATHDEAVQALKKTGKEVVLEV 86

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.0 bits (174), Expect = 5e-16
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 128 PVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
              +T+ K D  GLG S++GG+++     P+ + KIF G  A++   L  GD IL++N  
Sbjct: 5   RRRVTVRKADAGGLGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVNGE 61

Query: 187 PVTEMSRIEAWSLLKKLND 205
            ++  +  EA   LKK   
Sbjct: 62  DLSSATHDEAVQALKKTGK 80

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.9 bits (194), Expect = 2e-18
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 5/89 (5%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYE---SKEITVHKVISGTPADRDGRLQKGDRILS 105
           +E + VVL  D P    GI L G        S    +  + + +PA+R G LQ GDR+++
Sbjct: 14  TETTEVVLTAD-PVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMA 72

Query: 106 INGKSMKGLTHKESLAILKRGPP-VEITL 133
           ING   +  T +E+  +L+      ++TL
Sbjct: 73  INGIPTEDSTFEEANQLLRDSSITSKVTL 101

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.3 bits (182), Expect = 1e-16
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 128 PVEITLIKDG-AGLGFSLEGGKDSP-FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
             E+ L  D   G G  L+G   +      P  +  I     AE+ G L+ GD ++ IN 
Sbjct: 16  TTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAING 75

Query: 186 VPVTEMSRIEAWSLLKK 202
           +P  + +  EA  LL+ 
Sbjct: 76  IPTEDSTFEEANQLLRD 92

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 77.6 bits (191), Expect = 3e-18
 Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 130 EITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           EITL +  +GLGFS+ GG D+P    D  + + KI  GG A ++G+L+  D IL +N V 
Sbjct: 4   EITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 63

Query: 188 VTEMSRIEAWSLLKK 202
           V E++   A   LK+
Sbjct: 64  VREVTHSAAVEALKE 78

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.4 bits (180), Expect = 8e-17
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 7/93 (7%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKE----ITVHKVISGTPADRDGRLQKGDRILS 105
           E   + L R    + +G ++AGG+D         I + K+I G  A +DGRL+  D IL 
Sbjct: 1   EYEEITLERG--NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILF 58

Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIKDG 137
           +N   ++ +TH  ++  LK  G  V + +++  
Sbjct: 59  VNEVDVREVTHSAAVEALKEAGSIVRLYVMRRK 91

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.6 bits (193), Expect = 3e-18
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 129 VEITLIKDG-AGLGFSLEGGKDSPFG-DQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           +EI L   G AGLG SL+G K    G D  + +K I  GG A K+G+L+  D+++ +N  
Sbjct: 27  LEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGE 86

Query: 187 PVTEMSRIEAWSLLKK 202
            +   S  EA   L++
Sbjct: 87  TLLGKSNHEAMETLRR 102

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.6 bits (180), Expect = 2e-16
 Identities = 23/97 (23%), Positives = 54/97 (55%), Gaps = 3/97 (3%)

Query: 40  CPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE---ITVHKVISGTPADRDGR 96
           C +L +  + ++++ +   D     +G++L G    E+     I +  +I G  A +DGR
Sbjct: 14  CYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGR 73

Query: 97  LQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITL 133
           L+  D+++++NG+++ G ++ E++  L+R   +E  +
Sbjct: 74  LRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNI 110

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (192), Expect = 4e-18
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 10/93 (10%)

Query: 54  VVLHRD-----LPGNSVGITLAGGSDYESKE----ITVHKVISGTPADRDGRLQKGDRIL 104
           + + RD     + GN +GI + GG +           + K++ G  A++ G+L +G ++L
Sbjct: 16  IKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVL 75

Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
             NG  +   T++E  +I+ +     EI +  D
Sbjct: 76  EWNGIPLTSKTYEEVQSIISQQSGEAEICVRLD 108

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (189), Expect = 1e-17
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 9/85 (10%)

Query: 127 PPVEITLIKD-------GAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAG 177
           P   I + +D       G GLG  + GGK+ P   G+    + KI  GG AE+ G+L  G
Sbjct: 12  PHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEG 71

Query: 178 DEILTINNVPVTEMSRIEAWSLLKK 202
            ++L  N +P+T  +  E  S++ +
Sbjct: 72  MQVLEWNGIPLTSKTYEEVQSIISQ 96

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (190), Expect = 4e-18
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 8/93 (8%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGG-----SDYESKEITVHKVISGTPADRDGRLQKGDRIL 104
           E+  V L +D   + +GI++ G      +  E   I V  V  G  A RDGR+Q  D+I+
Sbjct: 2   ELFPVELEKD--EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIV 59

Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
            ++G S+ G+T   +  +L+     V   + ++
Sbjct: 60  EVDGISLVGVTQNFAATVLRNTKGNVRFVIGRE 92

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.3 bits (185), Expect = 2e-17
 Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 129 VEITLIKDGAGLGFSLEGGK---DSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
             + L KD  GLG S+ G     D+      + VK +  GG A+++G+++  D+I+ ++ 
Sbjct: 4   FPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDG 63

Query: 186 VPVTEMSRIEAWSLLKKLND 205
           + +  +++  A ++L+    
Sbjct: 64  ISLVGVTQNFAATVLRNTKG 83

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (191), Expect = 5e-18
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPF-----GDQPLTVKKIFTGGCAEKNGQLKAGDEI 180
           G  + + L +D   LGF++ GG+ S         + + V KI   G A K G L+  D I
Sbjct: 7   GKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRI 66

Query: 181 LTINNVPVTEMSRIEAWSLLKKLND 205
           + +N   ++  +  +A    K   +
Sbjct: 67  IEVNGRDLSRATHDQAVEAFKTAKE 91

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (183), Expect = 5e-17
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 10/100 (10%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKE-------ITVHKVISGTPADRDGRLQKG 100
           + +   +VLHRD    S+G  + GG              I V K++   PA ++G LQ  
Sbjct: 6   SGKSLTLVLHRD--SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIH 63

Query: 101 DRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
           DRI+ +NG+ +   TH +++   K    P+ + +++  +G
Sbjct: 64  DRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSG 103

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (190), Expect = 5e-18
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 54  VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
           V L R    +  G  + GG +   + I +  VI+   ADRDGRL  GD ++ ++G  + G
Sbjct: 13  VHLRRM--ESGFGFRILGGDE-PGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAG 69

Query: 114 LTHKESLAILKRGPP-VEITLI 134
            TH+  + ++       ++ L 
Sbjct: 70  KTHRYVIDLMHHAARNGQVNLT 91

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.4 bits (180), Expect = 1e-16
 Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
           +++ L +  +G GF + GG +     QP+ +  +   G A+++G+L  GDE++ ++ +PV
Sbjct: 11  LDVHLRRMESGFGFRILGGDEP---GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPV 67

Query: 189 TEMSRIEAWSLLKKLNDGT 207
              +      L+       
Sbjct: 68  AGKTHRYVIDLMHHAARNG 86

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (189), Expect = 5e-18
 Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
           + +TL K   G+G S+   K +      + VK +  GG A+ +G+L AGD++L+++   +
Sbjct: 6   ITVTLKKQN-GMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSL 64

Query: 189 TEMSRIEAWSLLKKLND 205
             +S+  A  L+ + + 
Sbjct: 65  VGLSQERAAELMTRTSS 81

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (186), Expect = 1e-17
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 6/92 (6%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGG--SDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
           E+  V L +    N +G+++     +  +   I V  V+ G  AD DGRL  GD++LS++
Sbjct: 4   EIITVTLKKQ---NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVD 60

Query: 108 GKSMKGLTHKESLAILKR-GPPVEITLIKDGA 138
           G+S+ GL+ + +  ++ R    V + + K GA
Sbjct: 61  GRSLVGLSQERAAELMTRTSSVVTLEVAKQGA 92

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 76.9 bits (189), Expect = 6e-18
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKE-----ITVHKVISGTPADRDGRLQKGDRIL 104
            + +V L +     S GI +  G   +S       I +  ++  +PA   GRL+ GDRIL
Sbjct: 3   LIHMVTLDKT-GKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRIL 61

Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITL 133
           S+NGK ++  T +  + ++K     +E+ +
Sbjct: 62  SLNGKDVRNSTEQAVIDLIKEADFKIELEI 91

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 69.9 bits (171), Expect = 2e-15
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 130 EITLIKDG-AGLGFSLEGGKDSP---FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
            +TL K G    G  +  G+           + +K I     A   G+LK GD IL++N 
Sbjct: 6   MVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNG 65

Query: 186 VPVTEMSRIEAWSLLKKLND 205
             V   +      L+K+ + 
Sbjct: 66  KDVRNSTEQAVIDLIKEADF 85

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.8 bits (191), Expect = 6e-18
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
            S   +V + +  PG+++GI+L   S      IT+ ++   +  DR G L  GD ILSI+
Sbjct: 13  ASGPLMVEIVKT-PGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSID 71

Query: 108 GKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
           G SM+  +  E+  +L      V + ++     
Sbjct: 72  GTSMEHCSLLEATKLLASISEKVRLEILPVPQS 104

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (164), Expect = 2e-14
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 128 PVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           P+ + ++K  G+ LG SL            +T+ +I      +++G L  GD IL+I+  
Sbjct: 16  PLMVEIVKTPGSALGISLTTTSLR--NKSVITIDRIKPASVVDRSGALHPGDHILSIDGT 73

Query: 187 PVTEMSRIEAWSLLKKLND 205
            +   S +EA  LL  +++
Sbjct: 74  SMEHCSLLEATKLLASISE 92

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.9 bits (189), Expect = 7e-18
 Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 48  TSEVSVVVLHRDLPGNSVGITLAGGSDYESKE-ITVHKVISGTPADRDGRLQKGDRILSI 106
           +S    V L +      +GIT++  S  +  + + +  +  G+ A R G L+ GD++L+I
Sbjct: 8   SSGTFHVKLPKK-HSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAI 66

Query: 107 NGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
           +   +   + ++++ IL++    V++ + KD
Sbjct: 67  DNIRLDSCSMEDAVQILQQCEDLVKLKIRKD 97

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.1 bits (174), Expect = 6e-16
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 128 PVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
              + L K     LG ++        GD PL +  I  G  A + G L+ GD++L I+N+
Sbjct: 11  TFHVKLPKKHSVELGITISSPSSRKPGD-PLVISDIKKGSVAHRTGTLELGDKLLAIDNI 69

Query: 187 PVTEMSRIEAWSLLKKLND 205
            +   S  +A  +L++  D
Sbjct: 70  RLDSCSMEDAVQILQQCED 88

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.0 bits (189), Expect = 1e-17
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKE-ITVHKVISGTPADRDGRLQKGDRILSING 108
           E+  V L+R    + +G+T+   +D E    I + ++   + A +DGR+++GDRI+ ING
Sbjct: 19  ELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQING 78

Query: 109 KSMKGLTHKESLAILKRGPPVEITLIKD 136
             ++      +L   +      + + + 
Sbjct: 79  IEVQNREEAVALLTSEENKNFSLLIARP 106

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (159), Expect = 2e-13
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 130 EITLIKDGA--GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           E+ L +  +   LG ++    D    D  + + +I     A K+G+++ GD I+ IN + 
Sbjct: 22  EVDLYRMNSQDKLGLTVCYRTDDE-DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIE 80

Query: 188 VTEMSRIEAWSLLKKLNDGTIQ 209
           V      EA +LL    +    
Sbjct: 81  VQNRE--EAVALLTSEENKNFS 100

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.7 bits (186), Expect = 1e-17
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
           P   E+  V L++D      G ++A G     K + V  +    P D  G L+  DR+L 
Sbjct: 2   PTPVELHKVTLYKDSGMEDFGFSVADGLL--EKGVYVKNIRPAGPGDL-GGLKPYDRLLQ 58

Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
           +N    +       + ++   G  +++ + ++
Sbjct: 59  VNHVRTRDFDCCLVVPLIAESGNKLDLVISRN 90

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.1 bits (148), Expect = 2e-12
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 130 EITLIKDGA--GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           ++TL KD      GFS+  G      ++ + VK I   G  +  G LK  D +L +N+V 
Sbjct: 9   KVTLYKDSGMEDFGFSVADGLL----EKGVYVKNIRPAGPGDL-GGLKPYDRLLQVNHVR 63

Query: 188 VTEMSRIEAWSLLKKLND 205
             +        L+ +  +
Sbjct: 64  TRDFDCCLVVPLIAESGN 81

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (186), Expect = 2e-17
 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 4/90 (4%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
           +   V + +       G ++ GG +Y+  ++ V ++    PA R+GR++ GD+I+ ING+
Sbjct: 11  DYFTVDMEKG--AKGFGFSIRGGREYKM-DLYVLRLAEDGPAIRNGRMRVGDQIIEINGE 67

Query: 110 SMKGLTHKESLAILKR-GPPVEITLIKDGA 138
           S + +TH  ++ ++K  G  V + L +   
Sbjct: 68  STRDMTHARAIELIKSGGRRVRLLLKRGTG 97

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (184), Expect = 4e-17
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
             + + K   G GFS+ GG++       L V ++   G A +NG+++ GD+I+ IN    
Sbjct: 13  FTVDMEKGAKGFGFSIRGGREYK---MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGEST 69

Query: 189 TEMSRIEAWSLLKKLND 205
            +M+   A  L+K    
Sbjct: 70  RDMTHARAIELIKSGGR 86

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.3 bits (185), Expect = 2e-17
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 128 PVEITLIKD-GAGLGFSLEGGKDSPF---GDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
              +TL KD   G G ++ GG+D+P    G+  + +  +  GG A+  G L+  D ++ +
Sbjct: 8   QYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMV 65

Query: 184 NNVPVTEMSRIEAWSLLKK 202
           N  P+ ++    A   L+K
Sbjct: 66  NGTPMEDVLHSFAVQQLRK 84

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.8 bits (181), Expect = 8e-17
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKE-----ITVHKVISGTPADRDGRLQKGDRIL 104
           E   V L +D      GI ++GG D    E     I +  V+ G PAD  G LQ+ DR++
Sbjct: 7   EQYTVTLQKD-SKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVV 63

Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITLIKDG 137
            +NG  M+ + H  ++  L++ G    I + +  
Sbjct: 64  MVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPR 97

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (185), Expect = 3e-17
 Identities = 32/78 (41%), Positives = 40/78 (51%), Gaps = 3/78 (3%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPF---GDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
                L +   GLGFS+ GGK S     GD  + V +I  GG A + G L+ GD +L+IN
Sbjct: 8   RHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSIN 67

Query: 185 NVPVTEMSRIEAWSLLKK 202
            V VTE     A SLL  
Sbjct: 68  GVDVTEARHDHAVSLLTA 85

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (183), Expect = 4e-17
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 8/98 (8%)

Query: 47  GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE-----ITVHKVISGTPADRDGRLQKGD 101
           G+S   V  L R      +G ++AGG            I V ++  G  A R G LQ GD
Sbjct: 4   GSSGRHVACLARS--ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGD 61

Query: 102 RILSINGKSMKGLTHKESLAILKR-GPPVEITLIKDGA 138
           R+LSING  +    H  ++++L    P + + L ++  
Sbjct: 62  RVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAG 99

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.1 bits (182), Expect = 4e-17
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 54  VVLHRDLPGNSVGITLA-GGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
           V + +   G  +G+ +   G       + +  ++ G PA++ G+L  GD+I+SING S+ 
Sbjct: 2   VFIEKQ-KGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLV 60

Query: 113 GLTHKESLAILKRGPP-VEITL 133
           GL      +I+K       + L
Sbjct: 61  GLPLSTCQSIIKGLKNQSRVKL 82

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (158), Expect = 7e-14
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 130 EITLIK-DGAGLGFSL-EGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           ++ + K  G  LG  + E G  S      + +  +  GG AEK+G+L  GD+I++IN   
Sbjct: 1   DVFIEKQKGEILGVVIVESGWGSI--LPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTS 58

Query: 188 VTEMSRIEAWSLLKKLNDGT 207
           +  +      S++K L + +
Sbjct: 59  LVGLPLSTCQSIIKGLKNQS 78

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 74.5 bits (183), Expect = 4e-17
 Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 54  VVLHRDLPGNSVGITLAGGSDYESKE-ITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
           V L+ +   N +GI++ G S+      I +  ++ G     DGR++ GD +L +N  + +
Sbjct: 5   VTLNME-KYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFE 63

Query: 113 GLTHKESLAILKRGP--PVEITLI 134
            +++ +++ +L+     P  I L 
Sbjct: 64  NMSNDDAVRVLRDIVHKPGPIVLT 87

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 72.6 bits (178), Expect = 2e-16
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 129 VEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           + +TL  +    LG S+ G  +   GD  + +  I  GG    +G+++ GD +L +N++ 
Sbjct: 3   ITVTLNMEKYNFLGISIVGQSNER-GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDIN 61

Query: 188 VTEMSRIEAWSLLKK 202
              MS  +A  +L+ 
Sbjct: 62  FENMSNDDAVRVLRD 76

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.5 bits (180), Expect = 1e-16
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 124 KRGPPVEITLIKDGAGLGFSL-----EGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGD 178
           K G   E+ L K    LG S+     +GG ++      + VK I   G AE +G++  GD
Sbjct: 1   KPGDTFEVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGD 60

Query: 179 EILTINNVPVTEMSRIEAWSLLKKLND 205
            +L +N V +   +  +A   L+    
Sbjct: 61  RVLAVNGVSLEGATHKQAVETLRNTGQ 87

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.4 bits (167), Expect = 6e-15
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 12/99 (12%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE-------ITVHKVISGTPADRDGRLQ 98
           PG  +   V L +     S+GI++    D            I V  +I    A+ DGR+ 
Sbjct: 2   PG--DTFEVELAKT--DGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIH 57

Query: 99  KGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
           KGDR+L++NG S++G THK+++  L+  G  V + L K 
Sbjct: 58  KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 96

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (178), Expect = 2e-16
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
           +V   ++     +GITL            V +++ G    R G L  GD I  ING S+ 
Sbjct: 4   LVQFQKN-TDEPMGITLKMNEL---NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVA 59

Query: 113 GLTHKESLAILKR-GPPVEITLI 134
             T ++   +L+     +   ++
Sbjct: 60  NQTVEQLQKMLREMRGSITFKIV 82

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (140), Expect = 2e-11
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 131 ITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVT 189
           +   K+    +G +L+  +          V +I  GG   + G L  GDEI  IN + V 
Sbjct: 5   VQFQKNTDEPMGITLKMNEL-----NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVA 59

Query: 190 EMSRIEAWSLLKKLND 205
             +  +   +L+++  
Sbjct: 60  NQTVEQLQKMLREMRG 75

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (176), Expect = 2e-16
 Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 51  VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKS 110
           V+ V++ R      +G ++  G         +  ++ G  A+R G ++ G RI+ ING+S
Sbjct: 1   VTTVLIRRPDLRYQLGFSVQNG--------IICSLMRGGIAER-GGVRVGHRIIEINGQS 51

Query: 111 MKGLTHKESLAILKR-GPPVEITLI 134
           +    H++ + IL      + +  +
Sbjct: 52  VVATPHEKIVHILSNAVGEIHMKTM 76

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (133), Expect = 1e-10
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 11/74 (14%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
           V I        LGFS++ G           +  +  GG AE+ G ++ G  I+ IN   V
Sbjct: 4   VLIRRPDLRYQLGFSVQNGI----------ICSLMRGGIAERGG-VRVGHRIIEINGQSV 52

Query: 189 TEMSRIEAWSLLKK 202
                 +   +L  
Sbjct: 53  VATPHEKIVHILSN 66

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (179), Expect = 3e-16
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
            +   V L     G S+G+T+ GG++Y    I +  V  G+ A+  G  + GD+IL +NG
Sbjct: 19  GDEKKVNLVLG-DGRSLGLTIRGGAEYGLG-IYITGVDPGSEAEGSGL-KVGDQILEVNG 75

Query: 109 KSMKGLTHKESLAILKRGPPVEITLIKDG 137
           +S   + H E++ +LK    + +T+   G
Sbjct: 76  RSFLNILHDEAVRLLKSSRHLILTVKDVG 104

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (170), Expect = 5e-15
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 108 GKSMKGLTHKESLAILKRGPPVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGG 166
           G S      + +L +L+ G   ++ L+  DG  LG ++ GG +       + +  +  G 
Sbjct: 1   GSSGSSGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEY---GLGIYITGVDPGS 57

Query: 167 CAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK 202
            AE +G LK GD+IL +N      +   EA  LLK 
Sbjct: 58  EAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKS 92

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (177), Expect = 4e-16
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 8/82 (9%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPF-----GDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
           + + + KD   LGFS+ GG           D  + V ++   G A     L+ GD+I+  
Sbjct: 13  IRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQA 69

Query: 184 NNVPVTEMSRIEAWSLLKKLND 205
           N      +   +A SLLK   +
Sbjct: 70  NGYSFINIEHGQAVSLLKTFQN 91

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (158), Expect = 1e-13
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 13/92 (14%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKE-------ITVHKVISGTPADRDGRLQKGDRILS 105
            V + +D     +G +++GG              I V +V    PA     LQ GD+I+ 
Sbjct: 14  RVRVEKD---PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQ 68

Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
            NG S   + H +++++LK     VE+ ++++
Sbjct: 69  ANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 100

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.1 bits (174), Expect = 7e-16
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 46  PG--TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRI 103
           PG   ++   V +        +G +++ G   +   I +  V  G+ +   G L+ GD+I
Sbjct: 2   PGNRENKEKKVFISLV-GSRGLGCSISSGPIQKPG-IFISHVKPGSLSAEVG-LEIGDQI 58

Query: 104 LSINGKSMKGLTHKESLAILKRGPPVEITLIK 135
           + +NG     L HKE++ +LK    + I+++ 
Sbjct: 59  VEVNGVDFSNLDHKEAVNVLKSSRSLTISIVA 90

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (149), Expect = 2e-12
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
           V I+L     GLG S+  G         + +  +  G  + +   L+ GD+I+ +N V  
Sbjct: 12  VFISL-VGSRGLGCSISSGPIQ---KPGIFISHVKPGSLSAE-VGLEIGDQIVEVNGVDF 66

Query: 189 TEMSRIEAWSLLKKLNDGTIQDIKALGYDL 218
           + +   EA ++LK     TI  + A G +L
Sbjct: 67  SNLDHKEAVNVLKSSRSLTISIVAAAGREL 96

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.6 bits (175), Expect = 7e-16
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 8/99 (8%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE------ITVHKVISGTPADRDGRLQK 99
            G+ + S VV+HR       G  +    +             + ++I G+PADR  +L+ 
Sbjct: 6   SGSLQTSDVVIHRK-ENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKV 64

Query: 100 GDRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKDG 137
           GDRIL++NG+S+  + H + + ++K  G  V + +I   
Sbjct: 65  GDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQE 103

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (160), Expect = 7e-14
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 128 PVEITLIK-DGAGLGFSLEGGKDSP----FGDQPLTVKKIFTGGCAEKNGQLKAGDEILT 182
             ++ + + +  G GF +    + P        P  + +I  G  A++  +LK GD IL 
Sbjct: 11  TSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILA 70

Query: 183 INNVPVTEMSRIEAWSLLKK 202
           +N   +  M   +   L+K 
Sbjct: 71  VNGQSIINMPHADIVKLIKD 90

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (173), Expect = 8e-16
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPF---GDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
            + +T+++   GLG S+ GGK S      D+ + + ++   G A +   ++ GD++L +N
Sbjct: 9   ELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAAR-AGVRVGDKLLEVN 67

Query: 185 NVPVTEMSRIEAWSLLKK 202
            V +      EA   L+ 
Sbjct: 68  GVALQGAEHHEAVEALRG 85

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (169), Expect = 3e-15
 Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 9/93 (9%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKE-----ITVHKVISGTPADRDGRLQKGDRIL 104
           E   + + R      +GI++AGG      +     I + +V    PA R   ++ GD++L
Sbjct: 8   EELTLTILRQ--TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARA-GVRVGDKLL 64

Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
            +NG +++G  H E++  L+  G  V++ + ++
Sbjct: 65  EVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE 97

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (173), Expect = 1e-15
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKE--------ITVHKVISGTPADRDGRLQKGD 101
            +  + + +  PG  +GI++ GG+   +          I + KV     A RDGRL+ G 
Sbjct: 9   GLRELCIQKA-PGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGL 67

Query: 102 RILSINGKSMKGLTHKESLAILKR-GPPVEITLIKDG 137
           R+L +N +S+ GLTH E++ +L+  G  + + +    
Sbjct: 68  RLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGF 104

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (169), Expect = 5e-15
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 126 GPPV-EITLIKD-GAGLGFSLEGGKDSPFG------DQPLTVKKIFTGGCAEKNGQLKAG 177
           GP + E+ + K  G  LG S+ GG     G      D+ + + K+   G A ++G+L+ G
Sbjct: 7   GPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVG 66

Query: 178 DEILTINNVPVTEMSRIEAWSLLKKLND 205
             +L +N   +  ++  EA  LL+ + D
Sbjct: 67  LRLLEVNQQSLLGLTHGEAVQLLRSVGD 94

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.3 bits (172), Expect = 1e-15
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 5/89 (5%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
           E   +V+HR      +G  + GG D   + I +  +++G PAD  G L+KGD+ILS+NG 
Sbjct: 9   EPRRIVIHRG--STGLGFNIVGGED--GEGIFISFILAGGPADLSGELRKGDQILSVNGV 64

Query: 110 SMKGLTHKESLAILKR-GPPVEITLIKDG 137
            ++  +H+++   LK  G  V I      
Sbjct: 65  DLRNASHEQAAIALKNAGQTVTIIAQYKP 93

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.2 bits (164), Expect = 2e-14
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           P  I + +   GLGF++ GG+D       + +  I  GG A+ +G+L+ GD+IL++N V 
Sbjct: 10  PRRIVIHRGSTGLGFNIVGGEDGE----GIFISFILAGGPADLSGELRKGDQILSVNGVD 65

Query: 188 VTEMSRIEAWSLLKKLND 205
           +   S  +A   LK    
Sbjct: 66  LRNASHEQAAIALKNAGQ 83

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (172), Expect = 2e-15
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADR-DGRLQKGDRILSIN 107
             + ++ +  D      G  + GG D +   + V +V  GTPAD    RL +GD+++ IN
Sbjct: 7   DNLVLIRMKPD-ENGRFGFNVKGGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLIN 64

Query: 108 GKSMKGLTHKESLAILKR---GPPVEITLI 134
           G+ +   TH + +  +K        E+ L+
Sbjct: 65  GRDIAEHTHDQVVLFIKASCERHSGELMLL 94

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (163), Expect = 2e-14
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 129 VEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEK-NGQLKAGDEILTINNV 186
           V I +  D     GF+++GG D      P+ V ++  G  A+    +L  GD+++ IN  
Sbjct: 10  VLIRMKPDENGRFGFNVKGGYD---QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGR 66

Query: 187 PVTEMSRIEAWSLLKKLNDGTIQDIK 212
            + E +  +    +K   +    ++ 
Sbjct: 67  DIAEHTHDQVVLFIKASCERHSGELM 92

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.0 bits (171), Expect = 2e-15
 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
           +V L +  PG  +G  + GG   +   I + KVI  + A R   LQ+GD++L++N    +
Sbjct: 18  IVTLKKP-PGAQLGFNIRGGKASQLG-IFISKVIPDSDAHRA-GLQEGDQVLAVNDVDFQ 74

Query: 113 GLTHKESLAILKRGPPVEITL 133
            + H +++ ILK    + + +
Sbjct: 75  DIEHSKAVEILKTAREISMRV 95

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.8 bits (155), Expect = 3e-13
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 123 LKRGPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEIL 181
           L +  P  +TL K  GA LGF++ GGK S      + + K+     A +   L+ GD++L
Sbjct: 11  LTQFLPRIVTLKKPPGAQLGFNIRGGKAS---QLGIFISKVIPDSDAHR-AGLQEGDQVL 66

Query: 182 TINNVPVTEMSRIEAWSLLKKLNDGTI 208
            +N+V   ++   +A  +LK   + ++
Sbjct: 67  AVNDVDFQDIEHSKAVEILKTAREISM 93

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (171), Expect = 2e-15
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 7/93 (7%)

Query: 46  PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
           P   E   V + +      +GI++  G       I V KV  G+ A + G L+ GD++L 
Sbjct: 15  PYVEEPRHVKVQKG--SEPLGISIVSGEK---GGIYVSKVTVGSIAHQAG-LEYGDQLLE 68

Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIKDG 137
            NG +++  T +++  I+ +    + I    + 
Sbjct: 69  FNGINLRSATEQQARLIIGQQCDTITILAQYNP 101

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (156), Expect = 3e-13
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           P  + + K    LG S+  G+        + V K+  G  A + G L+ GD++L  N + 
Sbjct: 20  PRHVKVQKGSEPLGISIVSGEKG-----GIYVSKVTVGSIAHQAG-LEYGDQLLEFNGIN 73

Query: 188 VTEMSRIEAWSLLKK 202
           +   +  +A  ++ +
Sbjct: 74  LRSATEQQARLIIGQ 88

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (169), Expect = 3e-15
 Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 53  VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
           +  L +    N  G  L G          +  V  G+PA++ G L  GDR++ +NG++++
Sbjct: 6   LCCLEKG--PNGYGFHLHGEKG--KLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVE 60

Query: 113 GLTHKESLAILKR-GPPVEITLIKDGA 138
             TH++ ++ ++     V + ++    
Sbjct: 61  KETHQQVVSRIRAALNAVRLLVVDPET 87

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (166), Expect = 7e-15
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           P    L K   G GF L G K    G     ++ +  G  AEK G L AGD ++ +N   
Sbjct: 4   PRLCCLEKGPNGYGFHLHGEK----GKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGEN 58

Query: 188 VTEMSRIEAWSLLKK 202
           V + +  +  S ++ 
Sbjct: 59  VEKETHQQVVSRIRA 73

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 68.8 bits (168), Expect = 4e-15
 Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 9/88 (10%)

Query: 54  VVLHRDLPGNSVGITLAGGSDYESKE--------ITVHKVISGTPADRDGRLQKGDRILS 105
           V L +      +G  +  G+              I + +++ G  A+  G L   D ++ 
Sbjct: 6   VRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIE 65

Query: 106 INGKSMKGLTHKESLAILKRGPPVEITL 133
           +NG  + G T  +   ++       + +
Sbjct: 66  VNGIEVAGKTLDQVTDMM-VANSSNLII 92

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 63.8 bits (155), Expect = 2e-13
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 8/81 (9%)

Query: 130 EITLIKDG--AGLGFSLEGGKDSPF------GDQPLTVKKIFTGGCAEKNGQLKAGDEIL 181
            + L+K G    LGF +  G               + + ++  GG AE  G L   DE++
Sbjct: 5   RVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVI 64

Query: 182 TINNVPVTEMSRIEAWSLLKK 202
            +N + V   +  +   ++  
Sbjct: 65  EVNGIEVAGKTLDQVTDMMVA 85

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.8 bits (168), Expect = 5e-15
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 47  GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
           G   V +V + +      +G T+    D     + + +++ G  A++ G L +GD +L I
Sbjct: 15  GGETVKIVRIEKA-RDIPLGATVRNEMDS----VIISRIVKGGAAEKSGLLHEGDEVLEI 69

Query: 107 NGKSMKGLTHKESLAILKRGPPVEITL 133
           NG  ++G    E   +L       +T 
Sbjct: 70  NGIEIRGKDVNEVFDLL-SDMHGTLTF 95

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.7 bits (134), Expect = 2e-10
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 130 EITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
            + + K     LG ++    D       + + +I  GG AEK+G L  GDE+L IN + +
Sbjct: 21  IVRIEKARDIPLGATVRNEMD------SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEI 74

Query: 189 TEMSRIEAWSLLKKLND 205
                 E + LL  ++ 
Sbjct: 75  RGKDVNEVFDLLSDMHG 91

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (165), Expect = 7e-15
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
              +TL       GF L+GGKD    + PLT+ +I  G  A +  QL  GD ++ I+ V 
Sbjct: 2   AYSVTLTG-PGPWGFRLQGGKDF---NMPLTISRITPGSKAAQ-SQLSQGDLVVAIDGVN 56

Query: 188 VTEMSRIEAWSLLKK 202
              M+ +EA + +K 
Sbjct: 57  TDTMTHLEAQNKIKS 71

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (164), Expect = 1e-14
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 54  VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
           V L         G  L GG D+    +T+ ++  G+ A +  +L +GD +++I+G +   
Sbjct: 5   VTLTG---PGPWGFRLQGGKDFNMP-LTISRITPGSKAAQ-SQLSQGDLVVAIDGVNTDT 59

Query: 114 LTHKESLAILKR-GPPVEITLIKDG 137
           +TH E+   +K     + +TL K  
Sbjct: 60  MTHLEAQNKIKSASYNLSLTLQKSK 84

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (165), Expect = 9e-15
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 54  VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
           V+L +D     +G+ L    +     I V  V + +PA   G L+ GD++L ING++  G
Sbjct: 6   VILCKD-QDGKIGLRLKSIDNG----IFVQLVQANSPASLVG-LRFGDQVLQINGENCAG 59

Query: 114 LTHKESLAILKRGPPVEITL-IKD 136
            +  ++  +LK+    +IT+ I+D
Sbjct: 60  WSSDKAHKVLKQAFGEKITMTIRD 83

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 2e-11
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 8/83 (9%)

Query: 128 PVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           P E+ L KD    +G  L+        D  + V+ +     A   G L+ GD++L IN  
Sbjct: 3   PREVILCKDQDGKIGLRLKSI------DNGIFVQLVQANSPASLVG-LRFGDQVLQINGE 55

Query: 187 PVTEMSRIEAWSLLKKLNDGTIQ 209
                S  +A  +LK+     I 
Sbjct: 56  NCAGWSSDKAHKVLKQAFGEKIT 78

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.2 bits (166), Expect = 9e-15
 Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 3/110 (2%)

Query: 51  VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKS 110
           V  V L +      +G  +          + +  +I G  A++ G +Q GD IL++N + 
Sbjct: 2   VISVRLFKR-KVGGLGFLVKERVS--KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRP 58

Query: 111 MKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVK 160
           +  L++  +L +L+        ++      GF+            P T++
Sbjct: 59  LVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIR 108

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.1 bits (145), Expect = 7e-12
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 5/81 (6%)

Query: 129 VEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
           + + L K    GLGF ++     P    P+ +  +  GG AE++G ++AGD IL +N+ P
Sbjct: 3   ISVRLFKRKVGGLGFLVKERVSKP----PVIISDLIRGGAAEQSGLIQAGDIILAVNDRP 58

Query: 188 VTEMSRIEAWSLLKKLNDGTI 208
           + ++S   A  +L+ +   T 
Sbjct: 59  LVDLSYDSALEVLRGIASETH 79

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (165), Expect = 1e-14
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 47  GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
           G +E+  + + +       G T+A             +V           L +GD I+ I
Sbjct: 7   GQAELMTLTIVKG--AQGFGFTIADSPTG-------QRVKQILDIQGCPGLCEGDLIVEI 57

Query: 107 NGKSMKGLTHKESLAILKRGPPV-EITLI 134
           N ++++ L+H E + ILK  P   E +LI
Sbjct: 58  NQQNVQNLSHTEVVDILKDCPIGSETSLI 86

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (162), Expect = 2e-14
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
           +   + +T++K   G GF++                 +      +    L  GD I+ IN
Sbjct: 8   QAELMTLTIVKGAQGFGFTIADSPTGQR---------VKQILDIQGCPGLCEGDLIVEIN 58

Query: 185 NVPVTEMSRIEAWSLLKKLNDGT 207
              V  +S  E   +LK    G+
Sbjct: 59  QQNVQNLSHTEVVDILKDCPIGS 81

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.7 bits (165), Expect = 1e-14
 Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 14/100 (14%)

Query: 50  EVSVVVLHRDLPGNSVGITLAGGSDYESKE-----------ITVHKVISGTPADRDGRLQ 98
           +   V+L +       G  L G       E             +  V  G  A R G L+
Sbjct: 5   KEKTVLLQKK-DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LR 62

Query: 99  KGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKDG 137
            GD ++ +NG+++  + H++ + ++++ G  + + ++   
Sbjct: 63  MGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT 102

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.1 bits (153), Expect = 6e-13
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 11/85 (12%)

Query: 128 PVEITLIK-DGAGLGFSLEGGKD---------SPFGDQPLTVKKIFTGGCAEKNGQLKAG 177
              + L K D  G GF L G K          +P       ++ +  GG A + G L+ G
Sbjct: 6   EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMG 64

Query: 178 DEILTINNVPVTEMSRIEAWSLLKK 202
           D ++ +N   V ++   +  +++++
Sbjct: 65  DFLIEVNGQNVVKVGHRQVVNMIRQ 89

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.1 bits (166), Expect = 2e-14
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
           ++  L     GLG  +            L +  +   G A  +G L+ GD ++++ +  V
Sbjct: 29  IQTKLTVGNLGLGLVVIQN------GPYLQISHLINKGAAASDGILQPGDVLISVGHANV 82

Query: 189 TEMSRIEAWSLLKKLNDGT 207
              +  E   LL+ +  GT
Sbjct: 83  LGYTLREFLKLLQNITIGT 101

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.7 bits (165), Expect = 2e-14
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 20/141 (14%)

Query: 13  ASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGG 72
            SS S  S+ E +QL  ++  S+              +V    L     G  +G+ +   
Sbjct: 1   GSSGSSGSKNEKEQL-SKAKASVSSLN----------KVIQTKLTVGNLG--LGLVVIQN 47

Query: 73  SDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPP---V 129
             Y    + +  +I+   A  DG LQ GD ++S+   ++ G T +E L +L+       +
Sbjct: 48  GPY----LQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVL 103

Query: 130 EITLIKDGAGLGFSLEGGKDS 150
           +I   +    +    +    S
Sbjct: 104 QIKAYRGFLEIPQEWQDSGPS 124

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.1 bits (161), Expect = 3e-14
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 47  GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
           G+S  S + +         G  ++GG D+    I V KV     A+    L+ GD I++I
Sbjct: 1   GSSGSSGLTVDVA-GPAPWGFRISGGRDFH-TPIIVTKVTERGKAEA-ADLRPGDIIVAI 57

Query: 107 NGKSMKGLTHKESLAILKR-GPPVEITLIKDGA 138
           NG+S + + H E+ + +++   P+ + L +   
Sbjct: 58  NGQSAENMLHAEAQSKIRQSASPLRLQLDRSSG 90

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.3 bits (159), Expect = 6e-14
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 134 IKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSR 193
           +   A  GF + GG+D      P+ V K+   G AE    L+ GD I+ IN      M  
Sbjct: 12  VAGPAPWGFRISGGRD---FHTPIIVTKVTERGKAEA-ADLRPGDIIVAINGQSAENMLH 67

Query: 194 IEAWSLLKK 202
            EA S +++
Sbjct: 68  AEAQSKIRQ 76

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (159), Expect = 4e-14
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 54  VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
           + + R    +  G T+   S      + V  V SG PA+R G LQ+ D +L +N + ++ 
Sbjct: 1   ITIPRG--KDGFGFTICCDSP-----VRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEH 52

Query: 114 LTHKESLAILKRGPPVEITLI 134
               E    + R  P EI L+
Sbjct: 53  WKCVELAHEI-RSCPSEIILL 72

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (156), Expect = 1e-13
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 8/72 (11%)

Query: 131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
           IT+ +   G GF++         D P+ V+ + +GG AE+ G L+  D +L +N  PV  
Sbjct: 1   ITIPRGKDGFGFTICC-------DSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEH 52

Query: 191 MSRIEAWSLLKK 202
              +E    ++ 
Sbjct: 53  WKCVELAHEIRS 64

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.5 bits (154), Expect = 3e-13
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 47  GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
           G+S  S  V+         G  L+GG D+ ++ + + ++  G+ A     L  GD IL+I
Sbjct: 1   GSSGSSGNVVLP--GPAPWGFRLSGGIDF-NQPLVITRITPGSKAAA-ANLCPGDVILAI 56

Query: 107 NGKSMKGLTHKESLAILKR-GPPVEITLIKDGAGL 140
           +G   + +TH ++   +K     + + + +    L
Sbjct: 57  DGFGTESMTHADAQDRIKAASYQLCLKIDRAETRL 91

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.0 bits (145), Expect = 7e-12
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 133 LIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMS 192
           ++   A  GF L GG D    +QPL + +I  G  A     L  GD IL I+      M+
Sbjct: 10  VLPGPAPWGFRLSGGID---FNQPLVITRITPGSKAAA-ANLCPGDVILAIDGFGTESMT 65

Query: 193 RIEAWSLLKK 202
             +A   +K 
Sbjct: 66  HADAQDRIKA 75

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.1 bits (153), Expect = 6e-13
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 62  GNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
               G  L GG D+    +T+  +  G  A +   ++ GD +LSI+G S +G+TH E+  
Sbjct: 14  PAPWGFRLQGGKDFN-MPLTISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTHLEAQN 71

Query: 122 ILKR-GPPVEITLIKDGAG 139
            +K     + +TL +  A 
Sbjct: 72  KIKACTGSLNMTLQRASAA 90

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.0 bits (150), Expect = 1e-12
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
           G    ++L+   A  GF L+GGKD    + PLT+  +  GG A +   ++ GD +L+I+ 
Sbjct: 4   GSSGSVSLVG-PAPWGFRLQGGKD---FNMPLTISSLKDGGKASQ-AHVRIGDVVLSIDG 58

Query: 186 VPVTEMSRIEAWSLLKK 202
           +    M+ +EA + +K 
Sbjct: 59  ISAQGMTHLEAQNKIKA 75

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.9 bits (142), Expect = 2e-11
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 8/85 (9%)

Query: 49  SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
           S    +    +     +G TL G +      + VH +     A      ++GD I+SI G
Sbjct: 14  SPPRGIHFTVE--EGDLGFTLRGNTP-----VQVHFLDPHCSASLA-GAKEGDYIVSIQG 65

Query: 109 KSMKGLTHKESLAILKRGPPVEITL 133
              K LT  E + +LK     E+ +
Sbjct: 66  VDCKWLTVSEVMKLLKSFGGEEVEM 90

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.1 bits (140), Expect = 4e-11
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 8/82 (9%)

Query: 127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           PP  I    +   LGF+L        G+ P+ V  +     A      K GD I++I  V
Sbjct: 15  PPRGIHFTVEEGDLGFTLR-------GNTPVQVHFLDPHCSASL-AGAKEGDYIVSIQGV 66

Query: 187 PVTEMSRIEAWSLLKKLNDGTI 208
               ++  E   LLK      +
Sbjct: 67  DCKWLTVSEVMKLLKSFGGEEV 88

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 1e-09
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 11/89 (12%)

Query: 47  GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
           G  +   + +H+D     VG           K   +  ++  + A R   L     I  I
Sbjct: 1   GAMDPRTITMHKD-STGHVGFIF--------KNGKITSIVKDSSAAR-NGLLTEHNICEI 50

Query: 107 NGKSMKGLTHKESLAILKR-GPPVEITLI 134
           NG+++ GL   +   IL   G  V IT++
Sbjct: 51  NGQNVIGLKDSQIADILSTSGTVVTITIM 79

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (112), Expect = 1e-07
 Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 12/76 (15%)

Query: 128 PVEITLIKDGAG-LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
           P  IT+ KD  G +GF            +   +  I     A +NG       I  IN  
Sbjct: 5   PRTITMHKDSTGHVGFIF----------KNGKITSIVKDSSAARNGL-LTEHNICEINGQ 53

Query: 187 PVTEMSRIEAWSLLKK 202
            V  +   +   +L  
Sbjct: 54  NVIGLKDSQIADILST 69

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

 Score = 51.1 bits (122), Expect = 6e-09
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 65  VGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL- 123
           VG+ +        K++ V     G PA++    + GD I++++G ++KG++  +   +L 
Sbjct: 7   VGLEITYDGGSG-KDVVVLTPAPGGPAEKA-GARAGDVIVTVDGTAVKGMSLYDVSDLLQ 64

Query: 124 -KRGPPVEITLIKDGA 138
            +    VE+ L   GA
Sbjct: 65  GEADSQVEVVLHAPGA 80

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 49.1 bits (117), Expect = 3e-08
 Identities = 12/75 (16%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 64  SVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH-KESLAI 122
           S+G+ +   +D ++    + +V++G  A   G + KG  +  ++ + +        ++  
Sbjct: 4   SLGVQV--TNDKDTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSADALVAAVRS 60

Query: 123 LKRGPPVEITLIKDG 137
              G  V +T     
Sbjct: 61  KAPGATVALTFQDPS 75

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.6 bits (105), Expect = 1e-06
 Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 8/71 (11%)

Query: 75  YESKEITVHKV--------ISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRG 126
            +     V K            +P    G    G  I  I+G+++   ++   +   K G
Sbjct: 9   LDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGSNIYRVLSEKAG 68

Query: 127 PPVEITLIKDG 137
               I L   G
Sbjct: 69  TSARIRLSGKG 79

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 66  GITLAGGSDYESKE-ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
           GI  A  S+    + + V+ V +GTPA + G L+KGD I+  N +++K +       +  
Sbjct: 12  GIEGAEMSNKGKDQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKNIAELRK-VLDS 69

Query: 125 RGPPVEITLIKDG 137
           +   + + + +  
Sbjct: 70  KPSVLALNIQRGD 82

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 80  ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDG 137
           + +HKVI G+PA R G L+ GD IL+I  + ++    ++    ++    + + + +  
Sbjct: 33  VLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRTQSQLAVQIRRGR 87

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]} Length = 87

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

 Score = 37.3 bits (86), Expect = 4e-04
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 82  VHKVISGTPADRDGRLQKGDRILSINGKSMKGLT-HKESLAILKRGPPVEITLIKDG 137
           V         +  G LQ GD  +++NG  +            +     + +T+ +DG
Sbjct: 23  VSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDG 78

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 80  ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH-KESLAILKRGPPVEITLIKDG 137
           + +  V+ G+PA     L  G  I SING     LT    +L  +  G  + IT  +  
Sbjct: 5   VQIDSVVPGSPAS--KVLTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITTDQGT 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	548
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.43
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.43
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.43
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.43
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.41
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.41
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.39
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.38
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.38
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.38
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.38
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.38
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.38
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.37
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.37
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.37
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.36
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.36
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.36
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.35
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.35
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.35
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.34
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.33
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.33
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.33
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.33
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.32
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.31
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.3
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.29
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.29
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.29
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.29
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.29
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.28
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.28
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.28
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.28
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.27
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.27
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.26
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.26
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.25
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.25
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.25
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.25
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.25
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.25
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.25
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.25
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.25
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.24
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.24
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.24
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.23
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.22
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.22
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.21
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.21
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.2
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.19
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.19
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.19
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.18
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.18
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.18
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.18
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.17
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.17
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.17
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.17
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.16
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.16
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.15
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.15
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.15
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.15
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.14
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.13
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.13
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.13
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.13
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.13
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.13
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.12
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.12
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.11
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.11
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	99.11
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.09
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.09
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.09
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.08
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.08
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.06
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.06
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.05
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.05
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.04
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.0
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.0
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	98.99
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	98.99
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.99
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	98.96
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	98.95
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	98.95
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	98.94
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	98.91
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	98.91
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.89
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	98.88
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	98.87
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	98.82
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.71
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	98.64
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.62
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.62
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	98.6
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	98.48
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.41
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.2
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.18
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	98.14
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	97.91
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	97.8
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	97.78
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	97.69

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.4e-13  Score=112.65  Aligned_cols=85  Identities=34%  Similarity=0.601  Sum_probs=73.7

Q ss_pred             eEEEEEeeCCCCCceEEEEEeCCCCC----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-C
Q psy6405          51 VSVVVLHRDLPGNSVGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-R  125 (548)
Q Consensus        51 ~~tV~L~Kd~~~~GLGfsIagG~d~~----~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~  125 (548)
                      +++|.|.|.  ..||||++.++.+..    ..+++|..|.|+|||+++|+|++||+|++|||+++.++++.+++..++ .
T Consensus         2 v~~V~L~k~--~~glG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~   79 (92)
T d2fe5a1           2 IMEVNLLKG--PKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT   79 (92)
T ss_dssp             EEEEEEECC--TTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC
T ss_pred             EEEEEEEEC--CCccCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcC
Confidence            578899987  478999999876532    357999999999999999999999999999999999999999987776 4


Q ss_pred             CCCeEEEEEecC
Q psy6405         126 GPPVEITLIKDG  137 (548)
Q Consensus       126 g~~VtVtV~RdG  137 (548)
                      +..++++|.|++
T Consensus        80 ~~~v~L~v~Rpg   91 (92)
T d2fe5a1          80 SDMVYLKVAKPG   91 (92)
T ss_dssp             CSEEEEEEECCC
T ss_pred             CCEEEEEEECCC
Confidence            567889888875

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=4.8e-13  Score=112.79  Aligned_cols=91  Identities=26%  Similarity=0.404  Sum_probs=78.8

Q ss_pred             hCCCCeEEEEEecCcceeEEEecCCC-----CCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy6405         124 KRGPPVEITLIKDGAGLGFSLEGGKD-----SPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWS  198 (548)
Q Consensus       124 k~g~~VtVtV~RdGkgLGfSItgg~~-----s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~Eave  198 (548)
                      ++++.++|++.|...++||+|.....     ......+++|.+|.++|+|+++|+|++||+|++|||+++.+++|.++++
T Consensus         1 kpg~~~~V~L~k~~~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~   80 (99)
T d1ozia_           1 KPGDTFEVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE   80 (99)
T ss_dssp             CTTCEEEEEEECCSSSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHH
T ss_pred             CCCCEEEEEEEECCCCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHH
Confidence            36778899999988899999986432     2223457999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCceeEEEEec
Q psy6405         199 LLKKLNDGTIQDIKALG  215 (548)
Q Consensus       199 lLrs~~g~~V~LlV~Ri  215 (548)
                      +|+++ +..+.+++.|.
T Consensus        81 ~lk~~-~~~v~L~v~R~   96 (99)
T d1ozia_          81 TLRNT-GQVVHLLLEKG   96 (99)
T ss_dssp             HHHHS-CSEEEEEEECC
T ss_pred             HHHCC-CCeEEEEEEeC
Confidence            99987 67899999885

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.7e-13  Score=114.00  Aligned_cols=85  Identities=28%  Similarity=0.630  Sum_probs=70.6

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCC--------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHH
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYE--------SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA  121 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~--------~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~  121 (548)
                      ++++|+|.|+ +..+|||++++|.+..        ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.
T Consensus         1 qpr~V~l~k~-~~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~   79 (96)
T d2fcfa1           1 QPRRVELWRE-PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVE   79 (96)
T ss_dssp             SCEEEEECCC-C-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             CCEEEEEEeC-CCCCCCEEEEcccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHH
Confidence            4689999998 5889999999875421        247899999999999999999999999999999999999999987


Q ss_pred             Hhh-CCCCeEEEEEe
Q psy6405         122 ILK-RGPPVEITLIK  135 (548)
Q Consensus       122 ~lk-~g~~VtVtV~R  135 (548)
                      .++ .+..++++|.|
T Consensus        80 ~lk~~~~~v~L~V~r   94 (96)
T d2fcfa1          80 AIRKAGNPVVFMVQS   94 (96)
T ss_dssp             HHHTCCSSEEEEEEC
T ss_pred             HHHcCCCeEEEEEEE
Confidence            776 46778888876

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=2.6e-13  Score=113.36  Aligned_cols=86  Identities=31%  Similarity=0.564  Sum_probs=74.0

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCC----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-  124 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~----~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-  124 (548)
                      +.++|.|.|.  ..+|||++.+|.+..    ..+++|..|.++|||+++|+|++||+|++|||.++.++++.+++..++ 
T Consensus         1 E~~~V~l~k~--~~glG~~i~gg~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~   78 (93)
T d1rgra_           1 EYEEITLERG--NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE   78 (93)
T ss_dssp             CEEEEEEECC--SSCCSEEECCCSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHH
T ss_pred             CCEEEEEEeC--CCcCCEEEEeecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHc
Confidence            4678999887  578999999876532    358999999999999999999999999999999999999999887775 


Q ss_pred             CCCCeEEEEEecC
Q psy6405         125 RGPPVEITLIKDG  137 (548)
Q Consensus       125 ~g~~VtVtV~RdG  137 (548)
                      .+..+.++|.|..
T Consensus        79 ~~~~v~L~v~R~~   91 (93)
T d1rgra_          79 AGSIVRLYVMRRK   91 (93)
T ss_dssp             TTTEEEEEEECSC
T ss_pred             CCCEEEEEEEeCC
Confidence            5677999988753

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=7e-13  Score=111.75  Aligned_cols=87  Identities=34%  Similarity=0.529  Sum_probs=73.5

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCC-------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHH
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDY-------ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA  121 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~-------~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~  121 (548)
                      ++.++|+|.|.  ..+|||++.++.+.       ...+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.
T Consensus         3 g~~~~V~L~k~--~~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~   80 (99)
T d1ozia_           3 GDTFEVELAKT--DGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE   80 (99)
T ss_dssp             TCEEEEEEECC--SSSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHH
T ss_pred             CCEEEEEEEEC--CCCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHH
Confidence            57899999997  46899999854321       2357999999999999999999999999999999999999999887


Q ss_pred             Hhh-CCCCeEEEEEecC
Q psy6405         122 ILK-RGPPVEITLIKDG  137 (548)
Q Consensus       122 ~lk-~g~~VtVtV~RdG  137 (548)
                      .++ .+..++++|.|+.
T Consensus        81 ~lk~~~~~v~L~v~R~~   97 (99)
T d1ozia_          81 TLRNTGQVVHLLLEKGQ   97 (99)
T ss_dssp             HHHHSCSEEEEEEECCC
T ss_pred             HHHCCCCeEEEEEEeCC
Confidence            766 4667888888854

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=8.2e-13  Score=113.29  Aligned_cols=89  Identities=30%  Similarity=0.595  Sum_probs=75.8

Q ss_pred             CCCCeEEEEEeeCCCCCceEEEEEeCCCC-------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHH
Q psy6405          47 GTSEVSVVVLHRDLPGNSVGITLAGGSDY-------ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES  119 (548)
Q Consensus        47 ~~~d~~tV~L~Kd~~~~GLGfsIagG~d~-------~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~a  119 (548)
                      ..++.++|+|.|+  ..+|||+|++|.+.       ...+++|..|.|+|||+++|+|++||+|++|||+++.++++.++
T Consensus         5 ~~g~~~~V~l~k~--~~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea   82 (107)
T d1uhpa_           5 SSGKSLTLVLHRD--SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQA   82 (107)
T ss_dssp             CSSEEEEEEECCS--SSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHH
T ss_pred             CCCCEEEEEEEEC--CCccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHH
Confidence            3567899999987  47899999987543       23579999999999999999999999999999999999999998


Q ss_pred             HHHhh-CCCCeEEEEEecC
Q psy6405         120 LAILK-RGPPVEITLIKDG  137 (548)
Q Consensus       120 V~~lk-~g~~VtVtV~RdG  137 (548)
                      +..++ .+..+.++|.|..
T Consensus        83 v~~lk~~~~~v~l~v~r~~  101 (107)
T d1uhpa_          83 VEAFKTAKEPIVVQVLRRT  101 (107)
T ss_dssp             HHHHHHCCSSEEEEEEECC
T ss_pred             HHHHHhCCCcEEEEEEECC
Confidence            87775 4667888888743

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.9e-13  Score=110.86  Aligned_cols=86  Identities=31%  Similarity=0.608  Sum_probs=71.8

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCC--CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYE--SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-  125 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~--~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-  125 (548)
                      .++.+|.+.+.   .+|||++.++.+..  ..+++|..|.|+|||+++|+|++||+|++|||+++.++++.+++..++. 
T Consensus         3 pei~~v~l~~~---~glG~~i~g~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~   79 (92)
T d1t2ma1           3 PEIITVTLKKQ---NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRT   79 (92)
T ss_dssp             CEEEEEEEECS---SSCCEEEEEECCSSCCSCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSC
T ss_pred             CeEEEEEEeCC---CccCEEEEeecCCCCCCCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcC
Confidence            45667777665   57999998876533  3478999999999999999999999999999999999999998877764 


Q ss_pred             CCCeEEEEEecC
Q psy6405         126 GPPVEITLIKDG  137 (548)
Q Consensus       126 g~~VtVtV~RdG  137 (548)
                      +..++++|.|.+
T Consensus        80 ~~~v~L~v~R~g   91 (92)
T d1t2ma1          80 SSVVTLEVAKQG   91 (92)
T ss_dssp             CSEEEEEEEECC
T ss_pred             CCeEEEEEEeCC
Confidence            566889888865

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=1.2e-12  Score=109.43  Aligned_cols=86  Identities=21%  Similarity=0.359  Sum_probs=75.0

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      ..+.+.+.|.|+....+|||++.++.+  ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++..++ .+
T Consensus         4 p~e~~~v~l~k~~~~~~~Gf~i~~~~~--~~g~~V~~V~~~g~A~~~g-L~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~   80 (91)
T d1m5za_           4 PVELHKVTLYKDSGMEDFGFSVADGLL--EKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESG   80 (91)
T ss_dssp             CCEEEEEEEECCTTCSSSSEEEEECTT--SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTST
T ss_pred             CCceEEEEEEECCCCCceeEEEeccCC--CCCEEEEEECCCChhHhCc-CCCCCEEEEECCEECCCCCHHHHHHHHHCCC
Confidence            356789999998556789999998764  3689999999999999999 9999999999999999999999887776 46


Q ss_pred             CCeEEEEEec
Q psy6405         127 PPVEITLIKD  136 (548)
Q Consensus       127 ~~VtVtV~Rd  136 (548)
                      ..+.++|.|+
T Consensus        81 ~~v~L~v~R~   90 (91)
T d1m5za_          81 NKLDLVISRN   90 (91)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEEC
Confidence            7789998885

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.9e-13  Score=110.32  Aligned_cols=82  Identities=27%  Similarity=0.464  Sum_probs=70.8

Q ss_pred             eEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCCe
Q psy6405          51 VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPPV  129 (548)
Q Consensus        51 ~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~V  129 (548)
                      +++|.+++.   .+|||++.+|.+. ..+++|..|.++|||+++| |++||+|++|||.++.++++.+++..++ .+..+
T Consensus         2 p~~V~l~~~---~~~Gf~i~gg~~~-~~~v~V~~v~~gs~A~~~~-L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~~v   76 (85)
T d1rgwa_           2 AYSVTLTGP---GPWGFRLQGGKDF-NMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNL   76 (85)
T ss_dssp             EEEEEECCS---SCCCEEECCCGGG-TSCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCE
T ss_pred             CEEEEecCC---CCCCEEEEeecCC-CCCEEEEEecCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEE
Confidence            577888654   7999999998764 3568999999999999988 9999999999999999999999987775 45679


Q ss_pred             EEEEEecC
Q psy6405         130 EITLIKDG  137 (548)
Q Consensus       130 tVtV~RdG  137 (548)
                      .++|.|.+
T Consensus        77 ~L~V~R~~   84 (85)
T d1rgwa_          77 SLTLQKSK   84 (85)
T ss_dssp             EEEEESCC
T ss_pred             EEEEEECC
Confidence            99998865

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.4e-12  Score=112.14  Aligned_cols=90  Identities=29%  Similarity=0.524  Sum_probs=76.3

Q ss_pred             CCCCCeEEEEEeeCCCCCceEEEEEeCCCCC--CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh
Q psy6405          46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYE--SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL  123 (548)
Q Consensus        46 ~~~~d~~tV~L~Kd~~~~GLGfsIagG~d~~--~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l  123 (548)
                      ...+++++|.|.|.  ..+|||+|.++.+..  ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..+
T Consensus         4 ~~~g~~~~V~l~k~--~~glG~~i~~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~ll   81 (110)
T d1um1a_           4 GSSGYVFTVELERG--PSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLI   81 (110)
T ss_dssp             CSCCCEEEEEEECC--TTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHH
T ss_pred             CCCCCEEEEEEEEC--CCCCCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHH
Confidence            34678999999998  468999999876532  35799999999999999999999999999999999999999998777


Q ss_pred             hC-CCCeEEEEEecC
Q psy6405         124 KR-GPPVEITLIKDG  137 (548)
Q Consensus       124 k~-g~~VtVtV~RdG  137 (548)
                      +. +..+.++|.|..
T Consensus        82 k~~~~~v~l~v~r~~   96 (110)
T d1um1a_          82 RHGGKKMRFLVAKSD   96 (110)
T ss_dssp             HTCCSEEEEEEECCC
T ss_pred             HcCCCeEEEEEEeCC
Confidence            63 556788887754

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=1e-12  Score=112.17  Aligned_cols=85  Identities=28%  Similarity=0.505  Sum_probs=74.9

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPP  128 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~  128 (548)
                      ..+++|.|.|. +..+|||++.++.+. ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++..++....
T Consensus        14 ~~pr~V~l~r~-~~~~lGf~i~gg~~~-~~gi~V~~V~~~s~A~~~G-L~~GD~Il~VNg~~v~~~~~~ev~~llk~~~~   90 (104)
T d1wi2a_          14 FLPRIVTLKKP-PGAQLGFNIRGGKAS-QLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTARE   90 (104)
T ss_dssp             SCCEEEEECCC-TTCCCSEEEECCSSS-CCCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHHSSS
T ss_pred             CcCEEEEEEeC-CCCCcceEEEccccC-CCCEEEEEECCCChhHhcc-cccCCEEEEECCEECCCCCHHHHHHHHhcCCe
Confidence            45689999997 478999999988754 3579999999999999999 99999999999999999999999988887778


Q ss_pred             eEEEEEec
Q psy6405         129 VEITLIKD  136 (548)
Q Consensus       129 VtVtV~Rd  136 (548)
                      +.++|.|.
T Consensus        91 v~l~V~~~   98 (104)
T d1wi2a_          91 ISMRVRFF   98 (104)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEEC
Confidence            88888763

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=8.3e-13  Score=113.15  Aligned_cols=86  Identities=44%  Similarity=0.799  Sum_probs=73.8

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-C
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-G  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-g  126 (548)
                      ..+++.+.+.|. ++.+|||++.+|.+....+++|..|.++|||+++|+|++||+|++|||.++.++++.+++..++. .
T Consensus         6 ~~~~~~v~l~k~-~~~~lG~~i~gg~~~~~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~   84 (107)
T d1x6da1           6 LDGIHVTILHKE-EGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAR   84 (107)
T ss_dssp             CTTEEEEEEECC-TTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTT
T ss_pred             cCCcEEEEEEcC-CCCccCEEEeeccCCCCCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCC
Confidence            567899999987 48899999999887667899999999999999999999999999999999999999999877763 3


Q ss_pred             CCeEEEEE
Q psy6405         127 PPVEITLI  134 (548)
Q Consensus       127 ~~VtVtV~  134 (548)
                      ..+.+++.
T Consensus        85 ~~~~l~v~   92 (107)
T d1x6da1          85 EPRQAVIV   92 (107)
T ss_dssp             SSSEEEEE
T ss_pred             CCEEEEEE
Confidence            34444444

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=1.4e-12  Score=108.84  Aligned_cols=86  Identities=36%  Similarity=0.589  Sum_probs=75.5

Q ss_pred             eEEEEEecCcceeEEEecCCCCCC--CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       129 VtVtV~RdGkgLGfSItgg~~s~l--G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      ..|++.|...++||+|.++.+.+.  ...+++|.+|.++|+|+++|+|++||+|++|||+++.++++.+++++|+++ +.
T Consensus         3 ~~V~l~k~~~glG~~i~gg~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~-~~   81 (93)
T d1rgra_           3 EEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA-GS   81 (93)
T ss_dssp             EEEEEECCSSCCSEEECCCSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHT-TT
T ss_pred             EEEEEEeCCCcCCEEEEeecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcC-CC
Confidence            468889988999999988765432  335899999999999999999999999999999999999999999999987 67


Q ss_pred             ceeEEEEec
Q psy6405         207 TIQDIKALG  215 (548)
Q Consensus       207 ~V~LlV~Ri  215 (548)
                      .+.+++.|.
T Consensus        82 ~v~L~v~R~   90 (93)
T d1rgra_          82 IVRLYVMRR   90 (93)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEEEeC
Confidence            899998874

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.38  E-value=1e-12  Score=109.91  Aligned_cols=85  Identities=28%  Similarity=0.505  Sum_probs=72.4

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCC-----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYE-----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK  124 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~-----~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk  124 (548)
                      .+++|.|.|+ +..+|||++.++.+..     ..+++|..|.|+|||+++|+|++||+|++|||+++.++++.+++..++
T Consensus         3 ~i~~V~L~k~-~~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~   81 (94)
T d1ihja_           3 LIHMVTLDKT-GKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIK   81 (94)
T ss_dssp             EEEEEEEECT-TSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EEEEEEEEeC-CCCCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHH
Confidence            4678999997 4789999999875432     236899999999999999999999999999999999999999887776


Q ss_pred             -CCCCeEEEEEe
Q psy6405         125 -RGPPVEITLIK  135 (548)
Q Consensus       125 -~g~~VtVtV~R  135 (548)
                       .+..++++|.|
T Consensus        82 ~~~~~v~L~V~R   93 (94)
T d1ihja_          82 EADFKIELEIQT   93 (94)
T ss_dssp             HSCSEEEEEEEE
T ss_pred             cCCCEEEEEEEe
Confidence             35668888876

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.5e-12  Score=108.72  Aligned_cols=86  Identities=35%  Similarity=0.578  Sum_probs=75.7

Q ss_pred             eEEEEEecCcceeEEEecCCCCC--CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         129 VEITLIKDGAGLGFSLEGGKDSP--FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       129 VtVtV~RdGkgLGfSItgg~~s~--lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      +.|++.|...++||+|.++....  .+..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++++|+++ +.
T Consensus         3 ~~V~L~k~~~glG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~-~~   81 (92)
T d2fe5a1           3 MEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT-SD   81 (92)
T ss_dssp             EEEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC-CS
T ss_pred             EEEEEEECCCccCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcC-CC
Confidence            57888998889999998765433  2345899999999999999999999999999999999999999999999987 56


Q ss_pred             ceeEEEEec
Q psy6405         207 TIQDIKALG  215 (548)
Q Consensus       207 ~V~LlV~Ri  215 (548)
                      .+++++.|.
T Consensus        82 ~v~L~v~Rp   90 (92)
T d2fe5a1          82 MVYLKVAKP   90 (92)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEECC
Confidence            899998875

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=7.1e-13  Score=111.10  Aligned_cols=85  Identities=31%  Similarity=0.493  Sum_probs=71.7

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCC-----CCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSD-----YESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK  124 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d-----~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk  124 (548)
                      ++++|.|.|+  ..+|||+++++..     ....+++|+.|.++|||+++|+|++||+|++|||+++.++++.+++..++
T Consensus         2 e~~~V~L~k~--~~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~   79 (94)
T d1wf8a1           2 ELFPVELEKD--EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR   79 (94)
T ss_dssp             EEEEEEEECB--TTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHH
T ss_pred             eEEEEEEEeC--CCCcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHH
Confidence            5688999997  4789999986421     12346899999999999999999999999999999999999999887776


Q ss_pred             -CCCCeEEEEEec
Q psy6405         125 -RGPPVEITLIKD  136 (548)
Q Consensus       125 -~g~~VtVtV~Rd  136 (548)
                       .+..++++|.|.
T Consensus        80 ~~~~~v~L~V~R~   92 (94)
T d1wf8a1          80 NTKGNVRFVIGRE   92 (94)
T ss_dssp             HCCSEEEEEEEEE
T ss_pred             cCCCeEEEEEEeC
Confidence             456788888875

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=7e-13  Score=112.92  Aligned_cols=90  Identities=32%  Similarity=0.532  Sum_probs=78.6

Q ss_pred             CCCCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC
Q psy6405          46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR  125 (548)
Q Consensus        46 ~~~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~  125 (548)
                      .+..+++.|.|.|.....+|||+|.++.+. ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++..++.
T Consensus         4 ~s~~~~~~v~l~r~~~~~glG~~i~gg~~~-~~~i~V~~v~~gg~A~~~g-L~~GD~Il~ING~~v~~~~~~~v~~ll~~   81 (101)
T d1ueza_           4 GSSGEVRLVSLRRAKAHEGLGFSIRGGSEH-GVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKG   81 (101)
T ss_dssp             CCSCCCEEECCCCCCTTTCSSEEEEECTTT-TCCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSS
T ss_pred             CCCCCEEEEEEEECCCCCeeCEEEEecccC-CCCEEEEEECCCChHHhcC-CCCCcEEEEECCEECCCCCHHHHHHHHhc
Confidence            346788999999876567899999988765 3479999999999999999 99999999999999999999999988887


Q ss_pred             CCCeEEEEEecC
Q psy6405         126 GPPVEITLIKDG  137 (548)
Q Consensus       126 g~~VtVtV~RdG  137 (548)
                      ...+.++|.|.+
T Consensus        82 ~~~~~l~V~~~~   93 (101)
T d1ueza_          82 SKKLVLSVYSAG   93 (101)
T ss_dssp             SSSCCEEECCCC
T ss_pred             CCCEEEEEEECC
Confidence            777888887754

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=9.1e-13  Score=109.98  Aligned_cols=85  Identities=29%  Similarity=0.492  Sum_probs=73.0

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-CC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GP  127 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-g~  127 (548)
                      .+.++|.|.|+. ..+|||++++|.+. ..+++|..|.|+|||+++|+|++||+|++|||+++.++++.+++..++. +.
T Consensus         3 ~q~r~V~l~k~~-~~~lG~~i~gg~~~-~~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~   80 (90)
T d1qava_           3 LQRRRVTVRKAD-AGGLGISIKGGREN-KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGK   80 (90)
T ss_dssp             SSCEEEEEECCT-TTCCCEEEEEEGGG-TEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCS
T ss_pred             ceEEEEEEEeCC-CCccCEEEEccccC-CCCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            457899999973 77999999987653 3579999999999999999999999999999999999999999877753 45


Q ss_pred             CeEEEEEe
Q psy6405         128 PVEITLIK  135 (548)
Q Consensus       128 ~VtVtV~R  135 (548)
                      .++++|.|
T Consensus        81 ~v~l~v~~   88 (90)
T d1qava_          81 EVVLEVKY   88 (90)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEE
Confidence            57777765

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.4e-12  Score=112.16  Aligned_cols=90  Identities=23%  Similarity=0.405  Sum_probs=79.8

Q ss_pred             CCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       125 ~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      .+..++|++.|...++||+|..+.....+..+++|..|.++|||+++|+|++||+|++|||+++.+++|.+++++|+.+ 
T Consensus         6 ~g~~~~V~l~k~~~glG~~i~~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~-   84 (110)
T d1um1a_           6 SGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHG-   84 (110)
T ss_dssp             CCCEEEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTC-
T ss_pred             CCCEEEEEEEECCCCCCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcC-
Confidence            3566889999998899999998876655556899999999999999999999999999999999999999999999987 


Q ss_pred             CCceeEEEEec
Q psy6405         205 DGTIQDIKALG  215 (548)
Q Consensus       205 g~~V~LlV~Ri  215 (548)
                      +..+.+++.|.
T Consensus        85 ~~~v~l~v~r~   95 (110)
T d1um1a_          85 GKKMRFLVAKS   95 (110)
T ss_dssp             CSEEEEEEECC
T ss_pred             CCeEEEEEEeC
Confidence            56788888764

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.36  E-value=8e-13  Score=110.66  Aligned_cols=85  Identities=24%  Similarity=0.491  Sum_probs=71.8

Q ss_pred             eEEEEEeeCCCCCceEEEEEeCCCCC-CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh----C
Q psy6405          51 VSVVVLHRDLPGNSVGITLAGGSDYE-SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK----R  125 (548)
Q Consensus        51 ~~tV~L~Kd~~~~GLGfsIagG~d~~-~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk----~  125 (548)
                      +.+|.+.++ +..+|||++.++.+.. ..+++|..|.|+|||+++|+|++||+|++|||+++.++++.+++..++    .
T Consensus         2 i~tV~l~k~-~~~~lGi~i~gg~~~~~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~   80 (92)
T d2f0aa1           2 IITVTLNME-KYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHK   80 (92)
T ss_dssp             EEEEEECHH-HHCSCCEEEECCCCTTSCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHS
T ss_pred             EEEEEEEeC-CCCccCEEEEccCCCCCCCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCC
Confidence            467889887 3679999999886543 358999999999999999999999999999999999999999876654    2


Q ss_pred             CCCeEEEEEec
Q psy6405         126 GPPVEITLIKD  136 (548)
Q Consensus       126 g~~VtVtV~Rd  136 (548)
                      ...+.++|.|.
T Consensus        81 ~~~v~L~V~R~   91 (92)
T d2f0aa1          81 PGPIVLTVAKL   91 (92)
T ss_dssp             SSCEEEEEECC
T ss_pred             CCcEEEEEEeC
Confidence            44688888874

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.2e-12  Score=115.71  Aligned_cols=90  Identities=41%  Similarity=0.713  Sum_probs=79.8

Q ss_pred             CeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCc
Q psy6405         128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGT  207 (548)
Q Consensus       128 ~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~  207 (548)
                      .+.|++.|.+.++||+|.++.....+..+++|..|.++|+|+++|+|++||+|++|||+.+.+++|.+++++|++.+...
T Consensus        30 ~~~V~l~k~~~glG~~i~gg~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~~~~  109 (130)
T d1i16a_          30 VCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGP  109 (130)
T ss_dssp             EEEEEEETTSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSE
T ss_pred             EEEEEEEeCCCccCEEEeeccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcCCCCe
Confidence            36678888888999999988766555568999999999999999999999999999999999999999999999987778


Q ss_pred             eeEEEEeccc
Q psy6405         208 IQDIKALGYD  217 (548)
Q Consensus       208 V~LlV~RilD  217 (548)
                      |.+++.|...
T Consensus       110 v~l~v~r~~~  119 (130)
T d1i16a_         110 VTIVIRRKSL  119 (130)
T ss_dssp             EEEEEEEESS
T ss_pred             EEEEEEcCCC
Confidence            8998888643

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.2e-12  Score=109.54  Aligned_cols=89  Identities=26%  Similarity=0.369  Sum_probs=77.1

Q ss_pred             CCCeEEEEEecCcceeEEEecCCCCC-----CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDSP-----FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLL  200 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s~-----lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelL  200 (548)
                      +..++|++.|+..++||+|.++....     ....+++|..|.++|+|+++|+|++||+|++|||+++.+++|.+++++|
T Consensus         7 g~~~~V~l~k~~~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~l   86 (107)
T d1uhpa_           7 GKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAF   86 (107)
T ss_dssp             SEEEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCEEEEEEEECCCccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHHHH
Confidence            45688999998889999999875432     1235799999999999999999999999999999999999999999999


Q ss_pred             HHcCCCceeEEEEec
Q psy6405         201 KKLNDGTIQDIKALG  215 (548)
Q Consensus       201 rs~~g~~V~LlV~Ri  215 (548)
                      +.+ +..+.+++.|.
T Consensus        87 k~~-~~~v~l~v~r~  100 (107)
T d1uhpa_          87 KTA-KEPIVVQVLRR  100 (107)
T ss_dssp             HHC-CSSEEEEEEEC
T ss_pred             HhC-CCcEEEEEEEC
Confidence            987 56788888774

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.2e-12  Score=108.34  Aligned_cols=87  Identities=23%  Similarity=0.367  Sum_probs=71.6

Q ss_pred             CeEEEEEec-CcceeEEEecCCCCCC------CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy6405         128 PVEITLIKD-GAGLGFSLEGGKDSPF------GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLL  200 (548)
Q Consensus       128 ~VtVtV~Rd-GkgLGfSItgg~~s~l------G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelL  200 (548)
                      +.+|++.|+ +.++||+|.++.....      ...+++|.+|.++|||+++|+|++||+|++|||+++.+++|.+++++|
T Consensus         2 pr~V~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~l   81 (96)
T d2fcfa1           2 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAI   81 (96)
T ss_dssp             CEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CEEEEEEeCCCCCCCEEEEcccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHHH
Confidence            567888886 5689999987654321      124799999999999999999999999999999999999999999999


Q ss_pred             HHcCCCceeEEEEec
Q psy6405         201 KKLNDGTIQDIKALG  215 (548)
Q Consensus       201 rs~~g~~V~LlV~Ri  215 (548)
                      +++ +..++++++|.
T Consensus        82 k~~-~~~v~L~V~r~   95 (96)
T d2fcfa1          82 RKA-GNPVVFMVQSI   95 (96)
T ss_dssp             HTC-CSSEEEEEECC
T ss_pred             HcC-CCeEEEEEEEc
Confidence            987 56899999875

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.5e-12  Score=113.90  Aligned_cols=87  Identities=32%  Similarity=0.546  Sum_probs=77.0

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGP  127 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~  127 (548)
                      ..+.+.|.+.+. ++.+|||+|.+|.+. ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++..++...
T Consensus        18 ~~~~~~v~l~~~-~~~~lGf~i~gg~~~-~~gv~V~~V~~g~~A~~~g-L~~GD~Il~INg~~v~~~s~~evv~~lr~~~   94 (128)
T d1uf1a_          18 GGDEKKVNLVLG-DGRSLGLTIRGGAEY-GLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSSR   94 (128)
T ss_dssp             CSSEEEEEEECC-SSCCCCEEEECCTTT-TCCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCS
T ss_pred             CCCeEEEEEEEC-CCCccCEEEEeeccC-CCCEEEEEECCCChHHhcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            467799999998 478999999998764 3579999999999999999 9999999999999999999999999998877


Q ss_pred             CeEEEEEecC
Q psy6405         128 PVEITLIKDG  137 (548)
Q Consensus       128 ~VtVtV~RdG  137 (548)
                      .+.++|.+.+
T Consensus        95 ~v~l~v~~~~  104 (128)
T d1uf1a_          95 HLILTVKDVG  104 (128)
T ss_dssp             EEEEEEECCS
T ss_pred             cEEEEEEECC
Confidence            7888887654

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.9e-12  Score=107.08  Aligned_cols=86  Identities=28%  Similarity=0.582  Sum_probs=73.2

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCC-----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHH
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYE-----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAI  122 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~-----~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~  122 (548)
                      +.+.+++.+.|+  ..+|||++.++.+..     ..+++|..|.++|||+++| |++||+|++|||.++.++++.+++..
T Consensus         6 ~~~~~~v~l~k~--~~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~   82 (97)
T d1x5qa1           6 EEEELTLTILRQ--TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEA   82 (97)
T ss_dssp             CCEEEEEEEECS--SSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CCeEEEEEEEeC--CCeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhc-ccCCCEEEEECCEECCCCCHHHHHHH
Confidence            455678899997  578999999876432     3479999999999999999 99999999999999999999998877


Q ss_pred             hhC-CCCeEEEEEec
Q psy6405         123 LKR-GPPVEITLIKD  136 (548)
Q Consensus       123 lk~-g~~VtVtV~Rd  136 (548)
                      ++. +..+.++|.|+
T Consensus        83 l~~~~~~v~l~v~R~   97 (97)
T d1x5qa1          83 LRGAGTAVQMRVWRE   97 (97)
T ss_dssp             HHSCCSEEEEEEEEC
T ss_pred             HhCCCCEEEEEEEEC
Confidence            754 66788988884

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=3.4e-12  Score=107.26  Aligned_cols=85  Identities=33%  Similarity=0.551  Sum_probs=73.6

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-CCC
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPP  128 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-g~~  128 (548)
                      .+++|.+.|.  +++|||++.++.+ ...+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++. +..
T Consensus         3 ~i~tV~l~k~--~~~lG~~i~g~~~-~~~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~   79 (95)
T d1n7ea_           3 IIYTVELKRY--GGPLGITISGTEE-PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGET   79 (95)
T ss_dssp             CEEEEEEECT--TSCCCEEEECCSS-TTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSE
T ss_pred             EEEEEEEEEC--CCcEeEEEEeccc-CCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4688999886  6899999998764 34679999999999999999999999999999999999999998877764 567


Q ss_pred             eEEEEEecC
Q psy6405         129 VEITLIKDG  137 (548)
Q Consensus       129 VtVtV~RdG  137 (548)
                      +.++|.|..
T Consensus        80 v~l~v~r~~   88 (95)
T d1n7ea_          80 VTLKIKKQT   88 (95)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEECC
Confidence            888888754

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.7e-12  Score=107.48  Aligned_cols=86  Identities=23%  Similarity=0.444  Sum_probs=73.8

Q ss_pred             eEEEEEecCcceeEEEecCC---CCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         129 VEITLIKDGAGLGFSLEGGK---DSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       129 VtVtV~RdGkgLGfSItgg~---~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      ++|++.|+..++||+|.++.   .......+++|.+|.++|||+++|+|++||+|++|||+++.+++|.+++++|+.+ +
T Consensus         4 ~~V~L~k~~~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~-~   82 (94)
T d1wf8a1           4 FPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNT-K   82 (94)
T ss_dssp             EEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHC-C
T ss_pred             EEEEEEeCCCCcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcC-C
Confidence            57888998889999997632   2222334789999999999999999999999999999999999999999999987 5


Q ss_pred             CceeEEEEec
Q psy6405         206 GTIQDIKALG  215 (548)
Q Consensus       206 ~~V~LlV~Ri  215 (548)
                      ..+++++.|.
T Consensus        83 ~~v~L~V~R~   92 (94)
T d1wf8a1          83 GNVRFVIGRE   92 (94)
T ss_dssp             SEEEEEEEEE
T ss_pred             CeEEEEEEeC
Confidence            6789998874

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.4e-12  Score=106.75  Aligned_cols=81  Identities=23%  Similarity=0.451  Sum_probs=70.2

Q ss_pred             eEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCCe
Q psy6405          51 VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPPV  129 (548)
Q Consensus        51 ~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~V  129 (548)
                      |+.|.|.|+  ..+|||++.++..  ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++..++ ++..+
T Consensus         4 Pr~v~l~k~--~~g~Gf~i~~~~~--~~~~~V~~V~~g~~A~~aG-l~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~~~v   78 (91)
T d1g9oa_           4 PRLCCLEKG--PNGYGFHLHGEKG--KLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAV   78 (91)
T ss_dssp             CEEEEEECB--TTBCCEEEEECTT--CSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEE
T ss_pred             CEEEEEEEC--CCeeeEEEEecCC--CCCEEEEEEcCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            689999998  4789999998754  4689999999999999999 9999999999999999999999887776 44567


Q ss_pred             EEEEEec
Q psy6405         130 EITLIKD  136 (548)
Q Consensus       130 tVtV~Rd  136 (548)
                      +++|.+.
T Consensus        79 ~L~v~~~   85 (91)
T d1g9oa_          79 RLLVVDP   85 (91)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            7777764

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=5.8e-12  Score=107.86  Aligned_cols=92  Identities=23%  Similarity=0.420  Sum_probs=72.7

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-CCC
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPP  128 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-g~~  128 (548)
                      ++.+|+|.|+ +.++|||++.++.+  ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++. ...
T Consensus         1 ~i~~V~l~k~-~~~glG~~i~~~~~--~~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~   77 (112)
T d1qaua_           1 NVISVRLFKR-KVGGLGFLVKERVS--KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASE   77 (112)
T ss_dssp             CEEEEEEECB-TTTBTSEEEEECSS--SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSS
T ss_pred             CeEEEEEEEC-CCCcEeEEEEeecC--CCCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCCC
Confidence            4678999997 48899999998755  4689999999999999999999999999999999999999998877763 233


Q ss_pred             eEEEEE-ecCcceeEEE
Q psy6405         129 VEITLI-KDGAGLGFSL  144 (548)
Q Consensus       129 VtVtV~-RdGkgLGfSI  144 (548)
                      ..+.+. |.+......+
T Consensus        78 ~~~~l~~~~~~~~~~~~   94 (112)
T d1qaua_          78 THVVLILRGPEGFTTHL   94 (112)
T ss_dssp             SEEEEEEECCTTSEEEE
T ss_pred             cEEEEEEeCCCCCCcEE
Confidence            444433 4444443333

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.6e-12  Score=109.89  Aligned_cols=88  Identities=32%  Similarity=0.565  Sum_probs=74.9

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCC-----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHH
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYE-----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAI  122 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~-----~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~  122 (548)
                      ....+.+.+.|.  ..+|||+|.+|.+..     ..+++|..|.|+|||+++|+|++||+|++|||+++.++++.+++..
T Consensus         5 ~~~~~~v~l~k~--~~glGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~   82 (105)
T d1whaa_           5 SSGRHVACLARS--ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSL   82 (105)
T ss_dssp             CCEEEEEEECCC--TTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHH
T ss_pred             CCCCEEEEEEEC--CCccCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHH
Confidence            345788999987  468999999876432     3579999999999999999999999999999999999999999887


Q ss_pred             hh-CCCCeEEEEEecC
Q psy6405         123 LK-RGPPVEITLIKDG  137 (548)
Q Consensus       123 lk-~g~~VtVtV~RdG  137 (548)
                      ++ .+..+.++|.|..
T Consensus        83 l~~~~~~v~l~v~R~~   98 (105)
T d1whaa_          83 LTAASPTIALLLEREA   98 (105)
T ss_dssp             HTSCCSCEEEEEEECC
T ss_pred             HHcCCCeEEEEEEECC
Confidence            76 4567889998854

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.2e-12  Score=105.98  Aligned_cols=81  Identities=23%  Similarity=0.397  Sum_probs=69.5

Q ss_pred             eEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-CCCe
Q psy6405          51 VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPV  129 (548)
Q Consensus        51 ~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-g~~V  129 (548)
                      ++.|.+.|. +.++|||++..+.+   ++++|..|.++|||+++|+|++||+|++|||.++.++++.+++..++. +..+
T Consensus         2 ~R~V~l~k~-~~~~lG~~l~~~~~---~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v   77 (88)
T d1kwaa_           2 SRLVQFQKN-TDEPMGITLKMNEL---NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSI   77 (88)
T ss_dssp             CEEEEEEEC-SSSCCCEEEECSCG---GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEE
T ss_pred             cEEEEEEeC-CCCCccEEEEEcCC---CCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCCCcE
Confidence            578999998 48899999997643   589999999999999999999999999999999999999999877763 3456


Q ss_pred             EEEEEe
Q psy6405         130 EITLIK  135 (548)
Q Consensus       130 tVtV~R  135 (548)
                      +++|..
T Consensus        78 ~L~i~p   83 (88)
T d1kwaa_          78 TFKIVP   83 (88)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            666653

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=3.2e-12  Score=109.01  Aligned_cols=86  Identities=34%  Similarity=0.614  Sum_probs=74.6

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-C
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-G  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-g  126 (548)
                      ..+++.|++.|.  ..+|||+++++.+  ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++. +
T Consensus         7 ~~~~r~V~l~k~--~~glG~~i~~~~~--~~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~   82 (102)
T d1tp5a1           7 PREPRRIVIHRG--STGLGFNIVGGED--GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG   82 (102)
T ss_dssp             CCSCEEEEEECT--TSCCCEEEEECGG--GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             CCCCEEEEEEeC--CCcccEEEEeccC--CCCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcCC
Confidence            346799999997  5789999998765  3589999999999999999999999999999999999999999877764 5


Q ss_pred             CCeEEEEEecC
Q psy6405         127 PPVEITLIKDG  137 (548)
Q Consensus       127 ~~VtVtV~RdG  137 (548)
                      ..++++|.|..
T Consensus        83 ~~v~L~v~~~~   93 (102)
T d1tp5a1          83 QTVTIIAQYKP   93 (102)
T ss_dssp             SEEEEEEEECH
T ss_pred             CeEEEEEEECC
Confidence            66888887754

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=4.2e-12  Score=107.22  Aligned_cols=88  Identities=24%  Similarity=0.405  Sum_probs=74.5

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCC-CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYE-SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~-~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      ...++|++.|. +..+|||++.++.+.. ..+++|..|.|+|||+++|+|++||+|++|||.++.++++.+++..++ .+
T Consensus         9 ~~~~~V~l~k~-~~~~lG~~v~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~~   87 (99)
T d1p1da2           9 SGTFHVKLPKK-HSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCE   87 (99)
T ss_dssp             SSCEEEEECCC-SSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCT
T ss_pred             CCcEEEEEEEC-CCCccCEEEEecCCCCCCCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcCC
Confidence            35688999887 3788999999775543 347999999999999999999999999999999999999999887775 35


Q ss_pred             CCeEEEEEecC
Q psy6405         127 PPVEITLIKDG  137 (548)
Q Consensus       127 ~~VtVtV~RdG  137 (548)
                      ..++++|.|+.
T Consensus        88 ~~v~L~V~r~~   98 (99)
T d1p1da2          88 DLVKLKIRKDE   98 (99)
T ss_dssp             TCEEEEEECCC
T ss_pred             CeEEEEEEeCC
Confidence            66889998753

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4e-12  Score=106.15  Aligned_cols=85  Identities=26%  Similarity=0.437  Sum_probs=73.4

Q ss_pred             eEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCce
Q psy6405         129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI  208 (548)
Q Consensus       129 VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V  208 (548)
                      ++|++.|. .++||+|.++.....+..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++++|+++ +..+
T Consensus         6 ~~v~l~~~-~glG~~i~g~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~-~~~v   83 (92)
T d1t2ma1           6 ITVTLKKQ-NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRT-SSVV   83 (92)
T ss_dssp             EEEEEECS-SSCCEEEEEECCSSCCSCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSC-CSEE
T ss_pred             EEEEEeCC-CccCEEEEeecCCCCCCCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcC-CCeE
Confidence            56666664 579999987765544445799999999999999999999999999999999999999999999987 5679


Q ss_pred             eEEEEec
Q psy6405         209 QDIKALG  215 (548)
Q Consensus       209 ~LlV~Ri  215 (548)
                      ++++.|.
T Consensus        84 ~L~v~R~   90 (92)
T d1t2ma1          84 TLEVAKQ   90 (92)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            9998885

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4.5e-12  Score=104.24  Aligned_cols=80  Identities=29%  Similarity=0.483  Sum_probs=68.5

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh--CCC
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK--RGP  127 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk--~g~  127 (548)
                      +++.+.+.|+ +.++|||++..+.    .+++|..|.++|||+++| |++||+|++|||+++.++++.+++..++  ++.
T Consensus         2 ~pr~v~l~k~-~~~~lG~~l~~~~----~g~~V~~v~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~   75 (85)
T d1w9ea1           2 DPREVILCKD-QDGKIGLRLKSID----NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGE   75 (85)
T ss_dssp             CCEEEEEECC-TTSCCSEEEEEET----TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSS
T ss_pred             CCEEEEEEeC-CCCCEeEEEEeCC----CCEEEEEECCCCHHHHcC-CCCccEEEEECCEEeCCCCHHHHHHHHhcCCCC
Confidence            5789999998 4889999998653    479999999999999999 9999999999999999999999876665  355


Q ss_pred             CeEEEEEe
Q psy6405         128 PVEITLIK  135 (548)
Q Consensus       128 ~VtVtV~R  135 (548)
                      .++++|.+
T Consensus        76 ~v~l~v~~   83 (85)
T d1w9ea1          76 KITMTIRD   83 (85)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEeC
Confidence            67777753

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=1e-11  Score=104.34  Aligned_cols=85  Identities=27%  Similarity=0.422  Sum_probs=75.4

Q ss_pred             eEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCce
Q psy6405         129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI  208 (548)
Q Consensus       129 VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V  208 (548)
                      .+|++.|.+.++||+|.++.+..   .+++|..|.++|+|+++|+|++||+|++|||+++.++++.+++++|+++ +..+
T Consensus         5 ~tV~l~k~~~~lG~~i~g~~~~~---~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~-~~~v   80 (95)
T d1n7ea_           5 YTVELKRYGGPLGITISGTEEPF---DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMA-GETV   80 (95)
T ss_dssp             EEEEEECTTSCCCEEEECCSSTT---SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEE
T ss_pred             EEEEEEECCCcEeEEEEecccCC---CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeE
Confidence            67888999999999999765432   3689999999999999999999999999999999999999999999987 6688


Q ss_pred             eEEEEeccc
Q psy6405         209 QDIKALGYD  217 (548)
Q Consensus       209 ~LlV~RilD  217 (548)
                      .+++.|..+
T Consensus        81 ~l~v~r~~~   89 (95)
T d1n7ea_          81 TLKIKKQTD   89 (95)
T ss_dssp             EEEEECCCC
T ss_pred             EEEEEECCC
Confidence            999888643

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.1e-12  Score=109.49  Aligned_cols=87  Identities=24%  Similarity=0.384  Sum_probs=74.4

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      ..+++.|.|.|.  ..+|||++.++.+   .+++|..|.++|||+++| |++||+|++|||+++.++++.+++..++ .+
T Consensus        17 ~~~~r~v~l~k~--~~glG~~i~gg~~---~gi~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~   90 (117)
T d1uita_          17 VEEPRHVKVQKG--SEPLGISIVSGEK---GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQC   90 (117)
T ss_dssp             SCCCEEEEEECS--SCCCCEEEEECTT---SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSCC
T ss_pred             CCCCEEEEEEeC--CCccCEEEEccCC---CCEEEEEEecCChHHhCC-CCCCCEeeeECCcccCCCCHHHHHHHHHCCC
Confidence            457899999987  5789999998765   589999999999999999 9999999999999999999999887776 45


Q ss_pred             CCeEEEEEecCcce
Q psy6405         127 PPVEITLIKDGAGL  140 (548)
Q Consensus       127 ~~VtVtV~RdGkgL  140 (548)
                      ..+.|+|.|.....
T Consensus        91 ~~v~l~v~~~p~~~  104 (117)
T d1uita_          91 DTITILAQYNPHVH  104 (117)
T ss_dssp             SEEEEEECCCSCCC
T ss_pred             CeEEEEEEECCcce
Confidence            56788887765443

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=8.2e-12  Score=105.85  Aligned_cols=85  Identities=20%  Similarity=0.387  Sum_probs=71.4

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCC-----------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYE-----------SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE  118 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~-----------~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~  118 (548)
                      +.++|.+.|. +..+|||++.++....           ..+++|..|.++|||+++| |++||+|++|||+++.++++.+
T Consensus         5 ~~~tV~l~r~-~~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aG-L~~GD~Il~INg~~v~~~~h~e   82 (104)
T d1q3oa_           5 KEKTVLLQKK-DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQ   82 (104)
T ss_dssp             EEEEEEEECC-TTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHH
T ss_pred             ceEEEEEEEC-CCCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEcCeEcCCCCHHH
Confidence            4578999987 4789999999875432           2368999999999999999 9999999999999999999999


Q ss_pred             HHHHhh-CCCCeEEEEEec
Q psy6405         119 SLAILK-RGPPVEITLIKD  136 (548)
Q Consensus       119 aV~~lk-~g~~VtVtV~Rd  136 (548)
                      ++..++ ++..++++|.+.
T Consensus        83 vv~~ik~~~~~v~L~V~~~  101 (104)
T d1q3oa_          83 VVNMIRQGGNTLMVKVVMV  101 (104)
T ss_dssp             HHHHHHHTTTEEEEEEEEE
T ss_pred             HHHHHHcCCCeEEEEEEec
Confidence            887776 456788888763

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=7.3e-12  Score=105.47  Aligned_cols=85  Identities=32%  Similarity=0.637  Sum_probs=70.1

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCC-CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYE-SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-  125 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~-~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-  125 (548)
                      ..+++.+.+.+.   .+|||++.+|.+.. ..+++|+.|.++|||+++|+|++||+|++|||+++.++++.+++..++. 
T Consensus         6 ~~~~~~v~~~~~---~glG~~i~gg~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~   82 (96)
T d1wi4a1           6 DPAFRVITVTKE---TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRA   82 (96)
T ss_dssp             CTTEEEEEECCS---SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHS
T ss_pred             CCcEEEEEecCC---CccCEEEEeccCCCCCCCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            456677777765   47999999987653 3578999999999999999999999999999999999999998876653 


Q ss_pred             ----CCCeEEEEEe
Q psy6405         126 ----GPPVEITLIK  135 (548)
Q Consensus       126 ----g~~VtVtV~R  135 (548)
                          ..++.+++.|
T Consensus        83 ~~~~~~~vel~~~R   96 (96)
T d1wi4a1          83 KLRSESPWEIAFIR   96 (96)
T ss_dssp             CCSSSSCEEEEEEC
T ss_pred             cCCCCCeEEEEEEC
Confidence                4557776655

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=6.2e-12  Score=107.20  Aligned_cols=87  Identities=31%  Similarity=0.507  Sum_probs=77.2

Q ss_pred             CCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       125 ~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      +..+..|++.|...++||+|+++...    .+++|..|.++|+|+++|+|++||+|++|||+++.++++.+++++|+++ 
T Consensus         7 ~~~~r~V~l~k~~~glG~~i~~~~~~----~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~-   81 (102)
T d1tp5a1           7 PREPRRIVIHRGSTGLGFNIVGGEDG----EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA-   81 (102)
T ss_dssp             CCSCEEEEEECTTSCCCEEEEECGGG----CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTS-
T ss_pred             CCCCEEEEEEeCCCcccEEEEeccCC----CCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcC-
Confidence            45678999999989999999987543    3799999999999999999999999999999999999999999999986 


Q ss_pred             CCceeEEEEecc
Q psy6405         205 DGTIQDIKALGY  216 (548)
Q Consensus       205 g~~V~LlV~Ril  216 (548)
                      ...+++++.+..
T Consensus        82 ~~~v~L~v~~~~   93 (102)
T d1tp5a1          82 GQTVTIIAQYKP   93 (102)
T ss_dssp             CSEEEEEEEECH
T ss_pred             CCeEEEEEEECC
Confidence            678888887753

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4e-12  Score=112.25  Aligned_cols=87  Identities=30%  Similarity=0.574  Sum_probs=73.6

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCC--CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYE--SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-  125 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~--~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-  125 (548)
                      .++++|.|.|.  ..+|||+|++|.+..  ..+++|..|.++|+|+++|+|++||+|++|||+++.++++.+++..++. 
T Consensus        28 ~~~~~V~l~k~--~~glG~~i~gg~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~  105 (130)
T d1i16a_          28 ATVCTVTLEKM--SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL  105 (130)
T ss_dssp             EEEEEEEEETT--SSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTS
T ss_pred             CeEEEEEEEeC--CCccCEEEeeccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcC
Confidence            44678889887  578999999886642  3579999999999999999999999999999999999999999888864 


Q ss_pred             -CCCeEEEEEecC
Q psy6405         126 -GPPVEITLIKDG  137 (548)
Q Consensus       126 -g~~VtVtV~RdG  137 (548)
                       ...+.++|.|..
T Consensus       106 ~~~~v~l~v~r~~  118 (130)
T d1i16a_         106 PDGPVTIVIRRKS  118 (130)
T ss_dssp             CSSEEEEEEEEES
T ss_pred             CCCeEEEEEEcCC
Confidence             335788887753

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.28  E-value=9.3e-12  Score=104.05  Aligned_cols=86  Identities=27%  Similarity=0.428  Sum_probs=73.0

Q ss_pred             eEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC--C
Q psy6405         129 VEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN--D  205 (548)
Q Consensus       129 VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~--g  205 (548)
                      ++|++.|+ ..++||+|.++.... +..+++|..|.++|||+++|+|++||+|++|||+++.+++|.+++++|+...  .
T Consensus         3 ~tV~l~k~~~~~lGi~i~gg~~~~-~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~~   81 (92)
T d2f0aa1           3 ITVTLNMEKYNFLGISIVGQSNER-GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKP   81 (92)
T ss_dssp             EEEEECHHHHCSCCEEEECCCCTT-SCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHSS
T ss_pred             EEEEEEeCCCCccCEEEEccCCCC-CCCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCCC
Confidence            56778775 467999999876542 3458999999999999999999999999999999999999999999998753  3


Q ss_pred             CceeEEEEec
Q psy6405         206 GTIQDIKALG  215 (548)
Q Consensus       206 ~~V~LlV~Ri  215 (548)
                      ..+++++.|.
T Consensus        82 ~~v~L~V~R~   91 (92)
T d2f0aa1          82 GPIVLTVAKL   91 (92)
T ss_dssp             SCEEEEEECC
T ss_pred             CcEEEEEEeC
Confidence            4688888874

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=7.4e-12  Score=108.81  Aligned_cols=90  Identities=29%  Similarity=0.447  Sum_probs=76.6

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-C
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-G  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-g  126 (548)
                      ...++.|++.|. +..+|||++.++.+....+++|..|.++|+|+++|+|++||+|++|||+++.++++.+++..++. +
T Consensus        13 ~~~p~~V~l~k~-~~~~lGi~i~~~~~~~~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~   91 (117)
T d1v62a_          13 ASGPLMVEIVKT-PGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASIS   91 (117)
T ss_dssp             SSSSEEEEEECC-TTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCS
T ss_pred             CCCCEEEEEEcC-CCCCcCEEEEeeccCCCCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcCC
Confidence            456788999987 47799999998776666789999999999999999999999999999999999999999887764 4


Q ss_pred             CCeEEEEEecCc
Q psy6405         127 PPVEITLIKDGA  138 (548)
Q Consensus       127 ~~VtVtV~RdGk  138 (548)
                      ..+.++|.|...
T Consensus        92 ~~v~l~v~~~~~  103 (117)
T d1v62a_          92 EKVRLEILPVPQ  103 (117)
T ss_dssp             SEEEEEECCBTT
T ss_pred             CcEEEEEEECCC
Confidence            557787776443

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.4e-12  Score=112.46  Aligned_cols=88  Identities=31%  Similarity=0.562  Sum_probs=73.6

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCC--------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHH
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDY--------ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL  120 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~--------~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV  120 (548)
                      ...++|+|.|. +..+|||+|++|.+.        ...+++|..|.|+|||+++|+|++||+|++|||+++.++++.+++
T Consensus         8 ~~~~~V~l~k~-~~~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~   86 (111)
T d1ujua_           8 PGLRELCIQKA-PGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAV   86 (111)
T ss_dssp             CSSSCEEEECC-TTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHH
T ss_pred             CCeEEEEEEeC-CCCccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHH
Confidence            45678999998 478999999987542        135799999999999999999999999999999999999999998


Q ss_pred             HHhhC-CCCeEEEEEecC
Q psy6405         121 AILKR-GPPVEITLIKDG  137 (548)
Q Consensus       121 ~~lk~-g~~VtVtV~RdG  137 (548)
                      ..++. +..++++|.|..
T Consensus        87 ~~lk~~~~~v~L~V~r~~  104 (111)
T d1ujua_          87 QLLRSVGDTLTVLVCDGF  104 (111)
T ss_dssp             HHHSSCSSEEEECCCCCC
T ss_pred             HHHHcCCCeEEEEEEECC
Confidence            87764 456777776643

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.2e-11  Score=103.26  Aligned_cols=82  Identities=26%  Similarity=0.313  Sum_probs=72.4

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      -+..|++.|+..++||+|.++...    .+++|..|.++|||+++| |++||+|++|||+++.+++|.+++++|++. +.
T Consensus         3 ~Pr~v~l~k~~~g~Gf~i~~~~~~----~~~~V~~V~~g~~A~~aG-l~~GD~Il~VNg~~v~~~t~~e~~~ll~~~-~~   76 (91)
T d1g9oa_           3 LPRLCCLEKGPNGYGFHLHGEKGK----LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAA-LN   76 (91)
T ss_dssp             CCEEEEEECBTTBCCEEEEECTTC----SSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTC-SS
T ss_pred             CCEEEEEEECCCeeeEEEEecCCC----CCEEEEEEcCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CC
Confidence            367899999999999999876543    369999999999999999 999999999999999999999999999987 56


Q ss_pred             ceeEEEEe
Q psy6405         207 TIQDIKAL  214 (548)
Q Consensus       207 ~V~LlV~R  214 (548)
                      .+++++.+
T Consensus        77 ~v~L~v~~   84 (91)
T d1g9oa_          77 AVRLLVVD   84 (91)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEEEC
Confidence            77877754

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1e-11  Score=100.71  Aligned_cols=76  Identities=26%  Similarity=0.385  Sum_probs=69.0

Q ss_pred             EEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeE
Q psy6405         131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQD  210 (548)
Q Consensus       131 VtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~L  210 (548)
                      |++.|...++||++.++.       +++|.+|.++|||+++| |+.||+|++|||+++.++++.+++.+++++ +..+++
T Consensus         1 v~l~r~~~g~Gf~l~~~~-------~~~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~i~~~-~~~v~L   71 (77)
T d2f5ya1           1 ITIPRGKDGFGFTICCDS-------PVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSC-PSEIIL   71 (77)
T ss_dssp             EEEECBTTBTSEEEECSS-------SCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTC-SSEEEE
T ss_pred             CEEecCCCcccEEEECCC-------CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEE
Confidence            578898889999998542       58999999999999999 999999999999999999999999999987 567999


Q ss_pred             EEEec
Q psy6405         211 IKALG  215 (548)
Q Consensus       211 lV~Ri  215 (548)
                      ++.|.
T Consensus        72 ~v~R~   76 (77)
T d2f5ya1          72 LVWRM   76 (77)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            99885

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=8.9e-12  Score=106.11  Aligned_cols=86  Identities=23%  Similarity=0.411  Sum_probs=74.3

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGP  127 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~  127 (548)
                      ....+.|.+.+.. +.+|||++.+|.+. ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++..++...
T Consensus         6 ~~~~~~v~i~~~~-~~glG~~i~~g~~~-~~gi~V~~V~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~   82 (101)
T d1x5na1           6 ENKEKKVFISLVG-SRGLGCSISSGPIQ-KPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSR   82 (101)
T ss_dssp             CCSSEEEEECCCS-SCCCCEEEEECCSS-SCSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHCS
T ss_pred             CCccEEEEEEeeC-CCcccEEEeccCCC-CCCEEEEEECCCChHHhCC-CCcccEEEEECCEECCCCCHHHHHHHHhCCC
Confidence            3455888898874 78999999998764 3579999999999999999 9999999999999999999999998888777


Q ss_pred             CeEEEEEec
Q psy6405         128 PVEITLIKD  136 (548)
Q Consensus       128 ~VtVtV~Rd  136 (548)
                      .+.++|.+.
T Consensus        83 ~~~l~v~~~   91 (101)
T d1x5na1          83 SLTISIVAA   91 (101)
T ss_dssp             SEEEEECSS
T ss_pred             CEEEEEEEC
Confidence            788877653

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.5e-11  Score=106.66  Aligned_cols=90  Identities=29%  Similarity=0.508  Sum_probs=78.8

Q ss_pred             CCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC-
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN-  204 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~-  204 (548)
                      +..+.+++.|...++||+|.++....   .+++|..|.++++|+++|+|++||+|++|||+++.+++|.+++++|+.++ 
T Consensus        18 ~~~~~v~l~k~~~glG~~i~gg~~~~---~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~~   94 (123)
T d1ueqa_          18 GTFLSTTLKKSNMGFGFTIIGGDEPD---EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPI   94 (123)
T ss_dssp             SEEEEEEEECCTTSCSEEEECCSSSS---CCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCT
T ss_pred             CeEEEEEEEECCCeeCEEEEeecCCC---CCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            45578888899999999999876532   46999999999999999999999999999999999999999999999875 


Q ss_pred             CCceeEEEEecccc
Q psy6405         205 DGTIQDIKALGYDL  218 (548)
Q Consensus       205 g~~V~LlV~RilDL  218 (548)
                      +..+.+++.|....
T Consensus        95 g~~v~L~v~R~~~~  108 (123)
T d1ueqa_          95 GQSVNLVLCRGYPL  108 (123)
T ss_dssp             TCEEEEEEEESCCC
T ss_pred             CCEEEEEEEcCCCC
Confidence            56789999986544

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.8e-11  Score=102.89  Aligned_cols=87  Identities=25%  Similarity=0.420  Sum_probs=75.6

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCC---CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSP---FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~---lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      ..+++++.|...++||+|.++....   ....+++|.+|.++|||+++| |++||+|++|||.++.++++.+++.+++++
T Consensus         8 ~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~   86 (97)
T d1x5qa1           8 EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGA   86 (97)
T ss_dssp             EEEEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHSC
T ss_pred             eEEEEEEEeCCCeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhc-ccCCCEEEEECCEECCCCCHHHHHHHHhCC
Confidence            4478889998889999998775432   123479999999999999999 999999999999999999999999999986


Q ss_pred             CCCceeEEEEec
Q psy6405         204 NDGTIQDIKALG  215 (548)
Q Consensus       204 ~g~~V~LlV~Ri  215 (548)
                       +..+.+++.|.
T Consensus        87 -~~~v~l~v~R~   97 (97)
T d1x5qa1          87 -GTAVQMRVWRE   97 (97)
T ss_dssp             -CSEEEEEEEEC
T ss_pred             -CCEEEEEEEEC
Confidence             67899999873

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.2e-11  Score=106.52  Aligned_cols=88  Identities=30%  Similarity=0.573  Sum_probs=73.9

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCC------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHH
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYE------SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA  121 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~------~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~  121 (548)
                      ..+.+.|.|.|. +..+|||++.++.+..      ..+++|..|.|+|||+++|+|++||+|++|||++|.++++.+++.
T Consensus         8 ~~~~~~V~l~r~-~~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~   86 (114)
T d1uewa_           8 SLQTSDVVIHRK-ENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVK   86 (114)
T ss_dssp             CCCCEEEEEECC-TTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHH
T ss_pred             CceeEEEEEEeC-CCCCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHH
Confidence            345688999987 4778999999876532      236899999999999999999999999999999999999999887


Q ss_pred             Hhh-CCCCeEEEEEec
Q psy6405         122 ILK-RGPPVEITLIKD  136 (548)
Q Consensus       122 ~lk-~g~~VtVtV~Rd  136 (548)
                      .++ .+..++++|.|.
T Consensus        87 ll~~~~~~v~l~V~r~  102 (114)
T d1uewa_          87 LIKDAGLSVTLRIIPQ  102 (114)
T ss_dssp             HHHHTTTEEEEEECCC
T ss_pred             HHHcCCCeEEEEEEeC
Confidence            776 356688888774

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4.9e-12  Score=104.87  Aligned_cols=83  Identities=40%  Similarity=0.689  Sum_probs=71.5

Q ss_pred             eEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCce
Q psy6405         129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI  208 (548)
Q Consensus       129 VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V  208 (548)
                      .+|++.|+..++||+|.++.....+..+++|..|.++|+|+++|.|++||+|++|||+++.+++|.+++++|+++ +..+
T Consensus         4 ~~V~l~K~~~~lG~~i~~g~~~~~~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~-~~~v   82 (88)
T d2fnea1           4 KSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT-KGTV   82 (88)
T ss_dssp             EEEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CSSE
T ss_pred             EEEEEEeCCCccCEEEEeccCCCCCCcCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcC-CCcE
Confidence            578888888889999987654433335799999999999999999999999999999999999999999999997 5667


Q ss_pred             eEEE
Q psy6405         209 QDIK  212 (548)
Q Consensus       209 ~LlV  212 (548)
                      ++++
T Consensus        83 ~L~V   86 (88)
T d2fnea1          83 TLMV   86 (88)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7765

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=9.9e-12  Score=102.06  Aligned_cols=77  Identities=27%  Similarity=0.525  Sum_probs=66.4

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      ..++++|.+.|+. .++|||++.++        +|..|.++|||+++| |++||+|++|||+++.++++.+++..++ .+
T Consensus         2 ~~~pr~V~l~k~~-~g~~Gf~i~~g--------~V~~v~~g~~A~~~G-l~~GD~Il~INg~~v~~~t~~~~~~ll~~~~   71 (82)
T d1r6ja_           2 AMDPRTITMHKDS-TGHVGFIFKNG--------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSG   71 (82)
T ss_dssp             TTCCEEEEEECCT-TSCCCEEEETT--------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred             CCCCEEEEEEeCC-CCCcCEEEEEE--------EEEEECCCChHHhcC-cCCCCEEEEeCCeEEeeCCHHHHHHHHHcCC
Confidence            4578999999984 66799999843        689999999999999 9999999999999999999999887766 45


Q ss_pred             CCeEEEEE
Q psy6405         127 PPVEITLI  134 (548)
Q Consensus       127 ~~VtVtV~  134 (548)
                      ..++++|.
T Consensus        72 ~~v~l~v~   79 (82)
T d1r6ja_          72 TVVTITIM   79 (82)
T ss_dssp             SEEEEEEE
T ss_pred             CEEEEEEE
Confidence            66777765

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=7.3e-12  Score=103.81  Aligned_cols=83  Identities=34%  Similarity=0.641  Sum_probs=70.4

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCC--CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CC
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYE--SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RG  126 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~--~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g  126 (548)
                      ++++|++.|+  ..+|||++.++.+..  ..+++|..|.++|||+++|+|++||+|++|||.++.++++.+++..++ .+
T Consensus         2 ~~~~V~l~K~--~~~lG~~i~~g~~~~~~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~   79 (88)
T d2fnea1           2 QCKSITLERG--PDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK   79 (88)
T ss_dssp             EEEEEEECCB--TTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             eEEEEEEEeC--CCccCEEEEeccCCCCCCcCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4789999887  468999999775433  247899999999999999999999999999999999999999987776 45


Q ss_pred             CCeEEEEE
Q psy6405         127 PPVEITLI  134 (548)
Q Consensus       127 ~~VtVtV~  134 (548)
                      ..++++|.
T Consensus        80 ~~v~L~Vl   87 (88)
T d2fnea1          80 GTVTLMVL   87 (88)
T ss_dssp             SSEEEEEE
T ss_pred             CcEEEEEE
Confidence            67777764

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=7.8e-12  Score=102.99  Aligned_cols=82  Identities=29%  Similarity=0.423  Sum_probs=70.9

Q ss_pred             CeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCc
Q psy6405         128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGT  207 (548)
Q Consensus       128 ~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~  207 (548)
                      +.+|++.+ +.++||+|.++.+..   .+++|..|.++|||++++ |++||+|++|||+++.+++|.+++++|+++ +..
T Consensus         2 p~~V~l~~-~~~~Gf~i~gg~~~~---~~v~V~~v~~gs~A~~~~-L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~-~~~   75 (85)
T d1rgwa_           2 AYSVTLTG-PGPWGFRLQGGKDFN---MPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSA-SYN   75 (85)
T ss_dssp             EEEEEECC-SSCCCEEECCCGGGT---SCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTC-SSC
T ss_pred             CEEEEecC-CCCCCEEEEeecCCC---CCEEEEEecCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCE
Confidence            35677754 678999999876542   368999999999999988 999999999999999999999999999987 568


Q ss_pred             eeEEEEec
Q psy6405         208 IQDIKALG  215 (548)
Q Consensus       208 V~LlV~Ri  215 (548)
                      +++++.|.
T Consensus        76 v~L~V~R~   83 (85)
T d1rgwa_          76 LSLTLQKS   83 (85)
T ss_dssp             EEEEEESC
T ss_pred             EEEEEEEC
Confidence            99999875

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=1.8e-11  Score=103.25  Aligned_cols=90  Identities=22%  Similarity=0.365  Sum_probs=76.0

Q ss_pred             CCCeEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         126 GPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       126 g~~VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      ...++|++.|. +.++||++..+..... ..+++|..|.++|+|+++|+|++||+|++|||+++.++++.+++++|+++ 
T Consensus         9 ~~~~~V~l~k~~~~~lG~~v~~~~~~~~-~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~-   86 (99)
T d1p1da2           9 SGTFHVKLPKKHSVELGITISSPSSRKP-GDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC-   86 (99)
T ss_dssp             SSCEEEEECCCSSCCCCCEEECSCSSST-TCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHC-
T ss_pred             CCcEEEEEEECCCCccCEEEEecCCCCC-CCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcC-
Confidence            45578888874 5679999987654321 23699999999999999999999999999999999999999999999997 


Q ss_pred             CCceeEEEEeccc
Q psy6405         205 DGTIQDIKALGYD  217 (548)
Q Consensus       205 g~~V~LlV~RilD  217 (548)
                      +..+++++.|..|
T Consensus        87 ~~~v~L~V~r~~d   99 (99)
T d1p1da2          87 EDLVKLKIRKDED   99 (99)
T ss_dssp             TTCEEEEEECCCC
T ss_pred             CCeEEEEEEeCCC
Confidence            5679999988643

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=6.8e-12  Score=107.20  Aligned_cols=88  Identities=39%  Similarity=0.515  Sum_probs=76.2

Q ss_pred             CeEEEEEecCcceeEEEecCCCCC---CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         128 PVEITLIKDGAGLGFSLEGGKDSP---FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       128 ~VtVtV~RdGkgLGfSItgg~~s~---lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      +..+++.|...++||+|.++....   .+..+++|.+|.++|+|+++|+|++||+|++|||+++.++++.+++++|+++ 
T Consensus         8 ~~~v~l~k~~~glGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~-   86 (105)
T d1whaa_           8 RHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA-   86 (105)
T ss_dssp             EEEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC-
T ss_pred             CEEEEEEECCCccCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHHcC-
Confidence            467888898889999999875432   2335799999999999999999999999999999999999999999999987 


Q ss_pred             CCceeEEEEecc
Q psy6405         205 DGTIQDIKALGY  216 (548)
Q Consensus       205 g~~V~LlV~Ril  216 (548)
                      ...+.+++.|..
T Consensus        87 ~~~v~l~v~R~~   98 (105)
T d1whaa_          87 SPTIALLLEREA   98 (105)
T ss_dssp             CSCEEEEEEECC
T ss_pred             CCeEEEEEEECC
Confidence            568999998853

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.7e-11  Score=101.20  Aligned_cols=72  Identities=29%  Similarity=0.565  Sum_probs=62.0

Q ss_pred             EEEEeeCCCCCceEEEEEe-CCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC
Q psy6405          53 VVVLHRDLPGNSVGITLAG-GSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR  125 (548)
Q Consensus        53 tV~L~Kd~~~~GLGfsIag-G~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~  125 (548)
                      .|.+.|. ++.+|||+++. +.+....+++|..|.|+|||+++|+|++||+|++|||+++.++++.+++..++.
T Consensus         1 eV~l~k~-~g~~LGi~i~~~~~~~~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~   73 (85)
T d1x45a1           1 DVFIEKQ-KGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKG   73 (85)
T ss_dssp             EEEEECC-TTSCCCEEEECCTTTSSSCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             CeEEEeC-CCCccCEEEEeCCCCCCCCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            3678887 47899999974 333344689999999999999999999999999999999999999999877764

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=1.4e-11  Score=102.91  Aligned_cols=84  Identities=25%  Similarity=0.275  Sum_probs=71.0

Q ss_pred             EEEEEec-CcceeEEEecCCCCC---CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         130 EITLIKD-GAGLGFSLEGGKDSP---FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       130 tVtV~Rd-GkgLGfSItgg~~s~---lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      .|++.|. +.++||+|.++....   ....+++|..|.++|||+++|+|++||+|++|||+++.++++.+++++|+++ +
T Consensus         6 ~V~L~k~~~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~-~   84 (94)
T d1ihja_           6 MVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEA-D   84 (94)
T ss_dssp             EEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHS-C
T ss_pred             EEEEEeCCCCCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHcC-C
Confidence            5777775 467999998764322   1223689999999999999999999999999999999999999999999987 5


Q ss_pred             CceeEEEEe
Q psy6405         206 GTIQDIKAL  214 (548)
Q Consensus       206 ~~V~LlV~R  214 (548)
                      ..++++|.|
T Consensus        85 ~~v~L~V~R   93 (94)
T d1ihja_          85 FKIELEIQT   93 (94)
T ss_dssp             SEEEEEEEE
T ss_pred             CEEEEEEEe
Confidence            678998876

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.1e-11  Score=100.49  Aligned_cols=74  Identities=23%  Similarity=0.387  Sum_probs=62.8

Q ss_pred             EEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCCeEEE
Q psy6405          54 VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPPVEIT  132 (548)
Q Consensus        54 V~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~VtVt  132 (548)
                      |.+.|.  ..+|||++.++     .+++|.+|.++|||+++| |++||+|++|||+++.++++.+++..++ ++..++++
T Consensus         1 v~l~r~--~~g~Gf~l~~~-----~~~~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~~v~L~   72 (77)
T d2f5ya1           1 ITIPRG--KDGFGFTICCD-----SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILL   72 (77)
T ss_dssp             EEEECB--TTBTSEEEECS-----SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred             CEEecC--CCcccEEEECC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEE
Confidence            467777  47899999853     368999999999999999 9999999999999999999999776555 45567888


Q ss_pred             EEe
Q psy6405         133 LIK  135 (548)
Q Consensus       133 V~R  135 (548)
                      |.|
T Consensus        73 v~R   75 (77)
T d2f5ya1          73 VWR   75 (77)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            776

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1e-11  Score=105.70  Aligned_cols=86  Identities=22%  Similarity=0.502  Sum_probs=74.4

Q ss_pred             CeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC-CC
Q psy6405         128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN-DG  206 (548)
Q Consensus       128 ~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~-g~  206 (548)
                      .++|++.|...++||+|.++.+..   .+++|..|.++|+|+++|+|++||+|++|||+++.+++|.+++++|+.++ ..
T Consensus        10 ~~~V~l~k~~~glG~~i~gg~~~~---~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~~   86 (103)
T d1uepa_          10 ELDVHLRRMESGFGFRILGGDEPG---QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNG   86 (103)
T ss_dssp             EECCEEESSSSSCCEEECCCCSTT---SCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEEEEeCCceEeEEEEecccCC---CcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence            367888898889999999765442   36899999999999999999999999999999999999999999999764 45


Q ss_pred             ceeEEEEecc
Q psy6405         207 TIQDIKALGY  216 (548)
Q Consensus       207 ~V~LlV~Ril  216 (548)
                      .+.+++.|..
T Consensus        87 ~v~l~v~r~~   96 (103)
T d1uepa_          87 QVNLTVRRKV   96 (103)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEeCC
Confidence            6888888753

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=5.8e-12  Score=107.29  Aligned_cols=84  Identities=29%  Similarity=0.496  Sum_probs=70.6

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC---C
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR---G  126 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~---g  126 (548)
                      +.++|.|.|.  ..+|||++.++.+. ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++.   +
T Consensus         9 ~~~~V~l~k~--~~glG~~i~gg~~~-~~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~   85 (103)
T d1uepa_           9 KELDVHLRRM--ESGFGFRILGGDEP-GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARN   85 (103)
T ss_dssp             EEECCEEESS--SSSCCEEECCCCST-TSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEeC--CceEeEEEEecccC-CCcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            3456778886  57899999987653 4679999999999999999999999999999999999999999877763   3


Q ss_pred             CCeEEEEEec
Q psy6405         127 PPVEITLIKD  136 (548)
Q Consensus       127 ~~VtVtV~Rd  136 (548)
                      ..+.++|.|+
T Consensus        86 ~~v~l~v~r~   95 (103)
T d1uepa_          86 GQVNLTVRRK   95 (103)
T ss_dssp             TEEEEEEEEE
T ss_pred             CEEEEEEEeC
Confidence            4577878774

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.24  E-value=1.3e-11  Score=104.20  Aligned_cols=85  Identities=19%  Similarity=0.320  Sum_probs=70.3

Q ss_pred             eEEEEEeeCCCCCceEEEEEeCCCCC--------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHH
Q psy6405          51 VSVVVLHRDLPGNSVGITLAGGSDYE--------SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAI  122 (548)
Q Consensus        51 ~~tV~L~Kd~~~~GLGfsIagG~d~~--------~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~  122 (548)
                      .+.|.+.|.....+|||++.+|.+..        ..+++|+.|.|+|||+++|+|++||+|++|||.++.++++.+++..
T Consensus         3 ~r~V~L~k~~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~   82 (98)
T d1rzxa_           3 HRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDM   82 (98)
T ss_dssp             CEEEEEECCCSSSCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             cEEEEEEECCCCCcccEEEecccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHH
Confidence            46788888766789999999775421        2368999999999999999999999999999999999999998877


Q ss_pred             hh-CCCCeEEEEEe
Q psy6405         123 LK-RGPPVEITLIK  135 (548)
Q Consensus       123 lk-~g~~VtVtV~R  135 (548)
                      ++ .+..++++|..
T Consensus        83 l~~~~~~v~l~v~p   96 (98)
T d1rzxa_          83 MVANSSNLIITVKP   96 (98)
T ss_dssp             HHHTCTEEEEEEEC
T ss_pred             HHcCCCeEEEEEEe
Confidence            76 44567777653

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=7e-12  Score=106.86  Aligned_cols=87  Identities=30%  Similarity=0.506  Sum_probs=73.3

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCC-----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYE-----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL  123 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~-----~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l  123 (548)
                      .+.++|++.|+ +..+|||++.++.+..     ..+++|..|.++|||+ ++ |++||+|++|||+++.++++.+++..+
T Consensus         6 ~e~~tV~l~k~-~~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~-~~-L~~GD~Il~INg~~v~~~~~~ev~~ll   82 (104)
T d2csja1           6 WEQYTVTLQKD-SKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQL   82 (104)
T ss_dssp             EEEEEEEEECC-SSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHHH
T ss_pred             CccEEEEEEeC-CCCCcCEEEEcccCCCccccCCCCEEEEEECCCChhh-cC-CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            45789999998 4789999999876532     3579999999999997 66 999999999999999999999988777


Q ss_pred             h-CCCCeEEEEEecCc
Q psy6405         124 K-RGPPVEITLIKDGA  138 (548)
Q Consensus       124 k-~g~~VtVtV~RdGk  138 (548)
                      + .+..+.++|.|.+.
T Consensus        83 ~~~~~~v~l~V~R~~~   98 (104)
T d2csja1          83 RKSGKIAAIVVKRPRK   98 (104)
T ss_dssp             HHSCSEEEEEEEEEEE
T ss_pred             HcCCCEEEEEEEeCCC
Confidence            6 45778888888543

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=1.6e-11  Score=102.26  Aligned_cols=85  Identities=29%  Similarity=0.436  Sum_probs=73.5

Q ss_pred             CCeEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         127 PPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       127 ~~VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      +..+|++.|+ +.++||+|.++.+..   .+++|..|.++|+|+++|.|++||+|++|||+++.++++.+++++|+.+ +
T Consensus         4 q~r~V~l~k~~~~~lG~~i~gg~~~~---~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~-~   79 (90)
T d1qava_           4 QRRRVTVRKADAGGLGISIKGGRENK---MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT-G   79 (90)
T ss_dssp             SCEEEEEECCTTTCCCEEEEEEGGGT---EEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTC-C
T ss_pred             eEEEEEEEeCCCCccCEEEEccccCC---CCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhC-C
Confidence            4578889885 467999998765432   3699999999999999999999999999999999999999999999998 5


Q ss_pred             CceeEEEEec
Q psy6405         206 GTIQDIKALG  215 (548)
Q Consensus       206 ~~V~LlV~Ri  215 (548)
                      ..+++++.|.
T Consensus        80 ~~v~l~v~~~   89 (90)
T d1qava_          80 KEVVLEVKYM   89 (90)
T ss_dssp             SEEEEEEEEC
T ss_pred             CeEEEEEEEe
Confidence            6789888764

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.2e-11  Score=103.09  Aligned_cols=93  Identities=23%  Similarity=0.380  Sum_probs=76.7

Q ss_pred             CCeEEEEEec-CcceeEEEecCCCCC----CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHH
Q psy6405         127 PPVEITLIKD-GAGLGFSLEGGKDSP----FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLK  201 (548)
Q Consensus       127 ~~VtVtV~Rd-GkgLGfSItgg~~s~----lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLr  201 (548)
                      ....|+|.|. ..++||+|.++....    ....+++|..|.++|+|+++|.|++||+|++|||+++.++++.+++++|+
T Consensus        10 ~~~~V~l~r~~~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll~   89 (114)
T d1uewa_          10 QTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIK   89 (114)
T ss_dssp             CCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHH
T ss_pred             eeEEEEEEeCCCCCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHHH
Confidence            4577888885 457999998865442    12347899999999999999999999999999999999999999999999


Q ss_pred             HcCCCceeEEEEeccccCC
Q psy6405         202 KLNDGTIQDIKALGYDLNS  220 (548)
Q Consensus       202 s~~g~~V~LlV~RilDLr~  220 (548)
                      ++ +..++++|.|......
T Consensus        90 ~~-~~~v~l~V~r~~~~~~  107 (114)
T d1uewa_          90 DA-GLSVTLRIIPQEELNS  107 (114)
T ss_dssp             HT-TTEEEEEECCCSCCCC
T ss_pred             cC-CCeEEEEEEeCCCcCC
Confidence            87 5678988887654443

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=1.9e-11  Score=106.85  Aligned_cols=84  Identities=30%  Similarity=0.490  Sum_probs=70.0

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-----
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-----  124 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-----  124 (548)
                      +++.+.+.+   ..+|||+|.+|.+...++++|..|.|+|||+++|+|++||+|++|||+++.++++.+++..++     
T Consensus        18 ~v~~~~~~~---~~~lG~~i~gg~d~~~~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~   94 (118)
T d1v6ba_          18 DVRLLRIKK---EGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQ   94 (118)
T ss_dssp             CEEEEEEES---CSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHH
T ss_pred             eEEEEEecC---CCCCCEEEEeeecCCCCCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccC
Confidence            444444443   368999999998876678999999999999999999999999999999999999999876664     


Q ss_pred             CCCCeEEEEEec
Q psy6405         125 RGPPVEITLIKD  136 (548)
Q Consensus       125 ~g~~VtVtV~Rd  136 (548)
                      .+..++++|.|.
T Consensus        95 ~~~~V~L~v~r~  106 (118)
T d1v6ba_          95 GGDWIDLVVAVC  106 (118)
T ss_dssp             TCSEEEEEEECC
T ss_pred             CCCEEEEEEEeC
Confidence            355688888874

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.21  E-value=3.3e-11  Score=100.43  Aligned_cols=77  Identities=26%  Similarity=0.484  Sum_probs=65.7

Q ss_pred             CCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh--CCCCeEEEEEecCc
Q psy6405          61 PGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK--RGPPVEITLIKDGA  138 (548)
Q Consensus        61 ~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk--~g~~VtVtV~RdGk  138 (548)
                      ++.|+|+.+....+. ..+++|..|.++|||++|| |++||+|++|||+++.++++.+++..++  ++..++|+|.|.+.
T Consensus         3 ~~~GiGi~i~~~~~~-~~~v~V~~v~~gsPA~~AG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~g~   80 (92)
T d1fc6a3           3 SVTGVGLEITYDGGS-GKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA   80 (92)
T ss_dssp             SCBBCSEEEEECTTC-SSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             ceEEEEEEEEEcCCC-CceEEEEEecCCCChhHHh-hHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEECCC
Confidence            478999999764332 3579999999999999999 9999999999999999999998887774  67789999999765


Q ss_pred             c
Q psy6405         139 G  139 (548)
Q Consensus       139 g  139 (548)
                      .
T Consensus        81 ~   81 (92)
T d1fc6a3          81 P   81 (92)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=6.3e-12  Score=107.27  Aligned_cols=89  Identities=27%  Similarity=0.550  Sum_probs=76.0

Q ss_pred             CCCCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-
Q psy6405          46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-  124 (548)
Q Consensus        46 ~~~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-  124 (548)
                      ....+.++|.|.|.  ..+|||+|.++.+. ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++ 
T Consensus         7 ~~~~e~~~v~l~k~--~~glG~~i~gg~~~-~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~   83 (103)
T d1wfva_           7 GQDFDYFTVDMEKG--AKGFGFSIRGGREY-KMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKS   83 (103)
T ss_dssp             CCCSCCEECCEECC--TTSSSBCCEEETTT-TEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             CCCceEEEEEEEeC--CCccCEEEEeeccC-CCCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHc
Confidence            34567889999987  46899999988764 357999999999999999999999999999999999999999887775 


Q ss_pred             CCCCeEEEEEecC
Q psy6405         125 RGPPVEITLIKDG  137 (548)
Q Consensus       125 ~g~~VtVtV~RdG  137 (548)
                      .+..+.++|.|..
T Consensus        84 ~~~~v~l~v~R~~   96 (103)
T d1wfva_          84 GGRRVRLLLKRGT   96 (103)
T ss_dssp             HCSEECEEEECTT
T ss_pred             CCCEEEEEEEECC
Confidence            4567888888853

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.5e-11  Score=106.53  Aligned_cols=91  Identities=23%  Similarity=0.337  Sum_probs=73.1

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCC-CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCC
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYE-SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRG  126 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~-~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g  126 (548)
                      ..+++.|.|.|.....+|||+|.++.+.. ..+++|..|.|+|||+++|+|++||+|++|||.++.++++..++.....+
T Consensus        17 ~~e~~~V~l~k~~~~~~lG~~i~~~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~~~~~~~l~~~~~   96 (124)
T d1wh1a_          17 ELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEEN   96 (124)
T ss_dssp             SCEECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSHHHHHHHHTCSSC
T ss_pred             CceeEEEEEEECCCCCcccEEEEecCCCCCCCCEEEEEECCCChhhhhcccCCCCEEEEECCEECCCHHHHHHHHhhCCC
Confidence            34567788888655689999999876532 45799999999999999999999999999999999998776665554456


Q ss_pred             CCeEEEEEecCc
Q psy6405         127 PPVEITLIKDGA  138 (548)
Q Consensus       127 ~~VtVtV~RdGk  138 (548)
                      ..+.+.|.|...
T Consensus        97 ~~v~l~v~r~~~  108 (124)
T d1wh1a_          97 KNFSLLIARPEL  108 (124)
T ss_dssp             CSCCEEEEECSS
T ss_pred             CcEEEEEEeCCC
Confidence            678888887543

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.9e-11  Score=104.24  Aligned_cols=86  Identities=27%  Similarity=0.506  Sum_probs=74.1

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC--
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR--  125 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~--  125 (548)
                      ..+...+.+.|.  ..+|||++.++.+. ..+++|..|.++|+|+++|+|++||+|++|||+++.++++.+++..++.  
T Consensus        17 ~~~~~~v~l~k~--~~glG~~i~gg~~~-~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~   93 (123)
T d1ueqa_          17 KGTFLSTTLKKS--NMGFGFTIIGGDEP-DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVP   93 (123)
T ss_dssp             CSEEEEEEEECC--TTSCSEEEECCSSS-SCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSC
T ss_pred             CCeEEEEEEEEC--CCeeCEEEEeecCC-CCCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            356778888887  57899999988764 4689999999999999999999999999999999999999999877753  


Q ss_pred             -CCCeEEEEEec
Q psy6405         126 -GPPVEITLIKD  136 (548)
Q Consensus       126 -g~~VtVtV~Rd  136 (548)
                       +..+.++|.|.
T Consensus        94 ~g~~v~L~v~R~  105 (123)
T d1ueqa_          94 IGQSVNLVLCRG  105 (123)
T ss_dssp             TTCEEEEEEEES
T ss_pred             CCCEEEEEEEcC
Confidence             45688888873

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=1.3e-11  Score=103.55  Aligned_cols=82  Identities=27%  Similarity=0.449  Sum_probs=68.9

Q ss_pred             eEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCCe
Q psy6405          51 VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPPV  129 (548)
Q Consensus        51 ~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~V  129 (548)
                      ..+|.+..   ..+|||++.++.+. ..+++|..|.|+|||+++| |++||+|++|||+++.++++.+++..++ .+..+
T Consensus         7 ~~tv~~~g---~~~~Gf~i~gg~d~-~~~i~V~~v~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v   81 (94)
T d1vb7a_           7 GLTVDVAG---PAPWGFRISGGRDF-HTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASPL   81 (94)
T ss_dssp             CEEEEECS---SSCCSBCCEEETTT-TEEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSE
T ss_pred             eEEEEEEC---CCcCCEEEEeeccC-CCCEEEEeccCCChhhhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            35555543   47899999998764 3578999999999999999 9999999999999999999999887776 46789


Q ss_pred             EEEEEecC
Q psy6405         130 EITLIKDG  137 (548)
Q Consensus       130 tVtV~RdG  137 (548)
                      .++|.|..
T Consensus        82 ~L~V~R~~   89 (94)
T d1vb7a_          82 RLQLDRSS   89 (94)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEECC
Confidence            99998854

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=6.8e-11  Score=100.82  Aligned_cols=84  Identities=25%  Similarity=0.473  Sum_probs=68.2

Q ss_pred             CeEEEEEeeCCCCCceEEEEEeCCCCC-------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHH
Q psy6405          50 EVSVVVLHRDLPGNSVGITLAGGSDYE-------SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAI  122 (548)
Q Consensus        50 d~~tV~L~Kd~~~~GLGfsIagG~d~~-------~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~  122 (548)
                      ..+++.+.+.. ..+|||+|++|.+..       ..+++|+.|.|+|||++  +|++||+|++|||+++.++++.+++..
T Consensus         9 ~~~~v~v~~~~-~~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~--~L~~GD~Il~VNg~~v~~~t~~eav~~   85 (103)
T d2h3la1           9 AKQEIRVRVEK-DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSL   85 (103)
T ss_dssp             EEEEEEEEEEC-SSSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTT--TCCTTCEEEEETTEECSSCCHHHHHHH
T ss_pred             ccEEEEEEEcc-CCCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHh--ccCCCCEEEEECCEECCCCCHHHHHHH
Confidence            34556665552 578999999986532       35799999999999975  499999999999999999999999877


Q ss_pred             hhC-CCCeEEEEEec
Q psy6405         123 LKR-GPPVEITLIKD  136 (548)
Q Consensus       123 lk~-g~~VtVtV~Rd  136 (548)
                      ++. +..++++|.|+
T Consensus        86 l~~~~~~v~L~V~R~  100 (103)
T d2h3la1          86 LKTFQNTVELIIVRE  100 (103)
T ss_dssp             HHHCCSEEEEEEEEE
T ss_pred             HHhCCCeEEEEEEEE
Confidence            764 56788888885

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.18  E-value=7.4e-11  Score=100.84  Aligned_cols=76  Identities=30%  Similarity=0.577  Sum_probs=66.1

Q ss_pred             CeEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         128 PVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       128 ~VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      .++|++.|. ..++||+|.++...    .+++|..|.++|||+++|+|++||+|++|||+++.++++.+++++|+.++..
T Consensus         2 i~~V~l~k~~~~glG~~i~~~~~~----~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~   77 (112)
T d1qaua_           2 VISVRLFKRKVGGLGFLVKERVSK----PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASE   77 (112)
T ss_dssp             EEEEEEECBTTTBTSEEEEECSSS----SCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSS
T ss_pred             eEEEEEEECCCCcEeEEEEeecCC----CCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCCC
Confidence            367788774 46899999976544    3699999999999999999999999999999999999999999999998554


Q ss_pred             c
Q psy6405         207 T  207 (548)
Q Consensus       207 ~  207 (548)
                      .
T Consensus        78 ~   78 (112)
T d1qaua_          78 T   78 (112)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=1.7e-11  Score=105.93  Aligned_cols=83  Identities=28%  Similarity=0.382  Sum_probs=72.8

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      .+..|++.|+..++||+|.++.       +++|..|.++|||+++| |++||+|++|||++|.+++|.+++++|+.+++.
T Consensus        15 ~pr~v~l~k~~~g~Gf~i~g~~-------~v~V~~V~~~spA~~~G-L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~   86 (111)
T d1vaea_          15 PPRGIHFTVEEGDLGFTLRGNT-------PVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGE   86 (111)
T ss_dssp             CCCCCCEECCSSCCSCCEESSS-------SCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTS
T ss_pred             CCEEEEEEECCCccCEEEECCc-------cEEEEEEcCCChHHhcc-cCcccEEEEECCEEcCCCCHHHHHHHHHcCCCC
Confidence            3467888898889999998643       58999999999999999 999999999999999999999999999998777


Q ss_pred             ceeEEEEeccc
Q psy6405         207 TIQDIKALGYD  217 (548)
Q Consensus       207 ~V~LlV~RilD  217 (548)
                      .+++.+.+..+
T Consensus        87 ~v~l~v~~~~~   97 (111)
T d1vaea_          87 EVEMKVVSLLD   97 (111)
T ss_dssp             EECEEEECEEC
T ss_pred             eEEEEEECCCC
Confidence            78887776544

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.5e-11  Score=101.78  Aligned_cols=85  Identities=35%  Similarity=0.427  Sum_probs=69.6

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCC---CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDY---ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-  124 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~---~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-  124 (548)
                      .+.+.|.+.|+ +..+|||++.+|.+.   ...+++|+.|.++|||+++|+|++||+|++|||+++.++++.+++..++ 
T Consensus         7 ~e~~~V~l~~~-~~~~lG~~i~gg~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~   85 (99)
T d1x5ra1           7 TETTEVVLCGD-PLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRD   85 (99)
T ss_dssp             SEEEEEEECCC-TTTCCCEEEECCSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHH
T ss_pred             eeeEEEEEEcC-CCCCcCEEEEEeccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            45678899988 478999999987532   2357999999999999999999999999999999999999999887665 


Q ss_pred             --CCCCeEEEEE
Q psy6405         125 --RGPPVEITLI  134 (548)
Q Consensus       125 --~g~~VtVtV~  134 (548)
                        ....+.|++.
T Consensus        86 ~~~~~~l~l~v~   97 (99)
T d1x5ra1          86 AALAHKVVLEVE   97 (99)
T ss_dssp             HHTTTCEEEEEE
T ss_pred             CCCCCEEEEEEE
Confidence              3344555543

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=6.1e-11  Score=97.31  Aligned_cols=81  Identities=26%  Similarity=0.289  Sum_probs=70.1

Q ss_pred             CCeEEEEEecC-cceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         127 PPVEITLIKDG-AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       127 ~~VtVtV~RdG-kgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      ++..|++.|+. .++||++.....      +++|.+|.++|||+++| |++||+|++|||+++.++++++++++|++.++
T Consensus         2 ~pr~v~l~k~~~~~lG~~l~~~~~------g~~V~~v~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~   74 (85)
T d1w9ea1           2 DPREVILCKDQDGKIGLRLKSIDN------GIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFG   74 (85)
T ss_dssp             CCEEEEEECCTTSCCSEEEEEETT------EEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             CCEEEEEEeCCCCCEeEEEEeCCC------CEEEEEECCCCHHHHcC-CCCccEEEEECCEEeCCCCHHHHHHHHhcCCC
Confidence            35678888854 469999986542      59999999999999999 99999999999999999999999999999877


Q ss_pred             CceeEEEEe
Q psy6405         206 GTIQDIKAL  214 (548)
Q Consensus       206 ~~V~LlV~R  214 (548)
                      ..+.+++.+
T Consensus        75 ~~v~l~v~~   83 (85)
T d1w9ea1          75 EKITMTIRD   83 (85)
T ss_dssp             SEEEEEEEC
T ss_pred             CEEEEEEeC
Confidence            788887754

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=6.8e-11  Score=100.70  Aligned_cols=83  Identities=31%  Similarity=0.483  Sum_probs=71.4

Q ss_pred             CCeEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         127 PPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       127 ~~VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      .+.+|++.|. +.++||+|.++....   .+++|..|.++|||+++| |++||+|++|||+++.+++|.+++++|+.+  
T Consensus        15 ~pr~V~l~r~~~~~lGf~i~gg~~~~---~gi~V~~V~~~s~A~~~G-L~~GD~Il~VNg~~v~~~~~~ev~~llk~~--   88 (104)
T d1wi2a_          15 LPRIVTLKKPPGAQLGFNIRGGKASQ---LGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTA--   88 (104)
T ss_dssp             CCEEEEECCCTTCCCSEEEECCSSSC---CCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHHS--
T ss_pred             cCEEEEEEeCCCCCcceEEEccccCC---CCEEEEEECCCChhHhcc-cccCCEEEEECCEECCCCCHHHHHHHHhcC--
Confidence            4578889886 468999999876542   369999999999999999 999999999999999999999999999986  


Q ss_pred             CceeEEEEec
Q psy6405         206 GTIQDIKALG  215 (548)
Q Consensus       206 ~~V~LlV~Ri  215 (548)
                      ..+.++|.|.
T Consensus        89 ~~v~l~V~~~   98 (104)
T d1wi2a_          89 REISMRVRFF   98 (104)
T ss_dssp             SSEEEEEECC
T ss_pred             CeEEEEEEEC
Confidence            3578887663

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.6e-11  Score=103.43  Aligned_cols=71  Identities=25%  Similarity=0.521  Sum_probs=62.8

Q ss_pred             EEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh
Q psy6405          52 SVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK  124 (548)
Q Consensus        52 ~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk  124 (548)
                      ..|.+.|.  ..+|||+|.++.+.....++|..|.|+|||+++|+|++||+|++|||+++.++++.+++..++
T Consensus         8 ~vv~~~k~--~~~lG~~i~gg~~~~~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~   78 (103)
T d1ufxa_           8 TLVRVKKS--AATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIA   78 (103)
T ss_dssp             EEEEEECC--SSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHH
T ss_pred             EEEEEEeC--CCccCEEEeeecCCCCCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHH
Confidence            45666665  689999999988766667999999999999999999999999999999999999999887665

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=7.3e-11  Score=98.32  Aligned_cols=82  Identities=24%  Similarity=0.340  Sum_probs=71.4

Q ss_pred             CeEEEEEecC--cceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         128 PVEITLIKDG--AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       128 ~VtVtV~RdG--kgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      ...+++.|..  .++||+|..+...    .+++|..|.++|+|+++| |++||+|++|||.++.++++.+++++|+.+ +
T Consensus         7 ~~~v~l~k~~~~~~~Gf~i~~~~~~----~g~~V~~V~~~g~A~~~g-L~~GD~Il~VNg~~v~~~t~~~~~~~l~~~-~   80 (91)
T d1m5za_           7 LHKVTLYKDSGMEDFGFSVADGLLE----KGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAES-G   80 (91)
T ss_dssp             EEEEEEECCTTCSSSSEEEEECTTS----SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTS-T
T ss_pred             eEEEEEEECCCCCceeEEEeccCCC----CCEEEEEECCCChhHhCc-CCCCCEEEEECCEECCCCCHHHHHHHHHCC-C
Confidence            3567788753  5699999876544    379999999999999999 999999999999999999999999999986 6


Q ss_pred             CceeEEEEec
Q psy6405         206 GTIQDIKALG  215 (548)
Q Consensus       206 ~~V~LlV~Ri  215 (548)
                      ..+.+++.|.
T Consensus        81 ~~v~L~v~R~   90 (91)
T d1m5za_          81 NKLDLVISRN   90 (91)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEEC
Confidence            7899999874

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4.9e-11  Score=97.11  Aligned_cols=74  Identities=24%  Similarity=0.476  Sum_probs=62.5

Q ss_pred             EEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-CCCeE
Q psy6405          52 SVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPVE  130 (548)
Q Consensus        52 ~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-g~~Vt  130 (548)
                      .++.+.|.....+|||++.++        +|..|.|+|||+++| |++||+|++|||.++.++++.+++..++. +..+.
T Consensus         2 ~tv~l~r~~~~~~lGf~i~~g--------~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~   72 (79)
T d1y7na1           2 TTVLIRRPDLRYQLGFSVQNG--------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIH   72 (79)
T ss_dssp             EEEEEEESSTTSCCCEEEETT--------EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEE
T ss_pred             EEEEEEcCCCCCCcCEEEECC--------EEEEEcCCCHHHHCC-CCCCCEEEEECCEEeCCCCHHHHHHHHHcCCCEEE
Confidence            567888876688999999843        789999999999988 99999999999999999999998877763 44566


Q ss_pred             EEEE
Q psy6405         131 ITLI  134 (548)
Q Consensus       131 VtV~  134 (548)
                      ++|.
T Consensus        73 l~vi   76 (79)
T d1y7na1          73 MKTM   76 (79)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6654

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.1e-11  Score=106.78  Aligned_cols=89  Identities=26%  Similarity=0.462  Sum_probs=74.5

Q ss_pred             CeEEEEEec-CcceeEEEecCCCCCC------CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy6405         128 PVEITLIKD-GAGLGFSLEGGKDSPF------GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLL  200 (548)
Q Consensus       128 ~VtVtV~Rd-GkgLGfSItgg~~s~l------G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelL  200 (548)
                      ...|+|.|. +.++||+|.++.....      ...+++|..|.++|||+++|+|++||+|++|||+++.+++|.+++++|
T Consensus        10 ~~~V~l~k~~~~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~l   89 (111)
T d1ujua_          10 LRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLL   89 (111)
T ss_dssp             SSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHH
T ss_pred             eEEEEEEeCCCCccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHHHHH
Confidence            367888886 4689999997654321      235799999999999999999999999999999999999999999999


Q ss_pred             HHcCCCceeEEEEeccc
Q psy6405         201 KKLNDGTIQDIKALGYD  217 (548)
Q Consensus       201 rs~~g~~V~LlV~RilD  217 (548)
                      +.+ +..++++|.|..+
T Consensus        90 k~~-~~~v~L~V~r~~~  105 (111)
T d1ujua_          90 RSV-GDTLTVLVCDGFE  105 (111)
T ss_dssp             SSC-SSEEEECCCCCCC
T ss_pred             HcC-CCeEEEEEEECCC
Confidence            987 5678888776544

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=7.3e-11  Score=102.51  Aligned_cols=86  Identities=22%  Similarity=0.375  Sum_probs=75.1

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      .+..|++.|...++||+|.++...     +++|..|.++|||+++| |++||+|++|||+++.++++.+++.+|+.+ +.
T Consensus        19 ~~r~v~l~k~~~glG~~i~gg~~~-----gi~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~~l~~~-~~   91 (117)
T d1uita_          19 EPRHVKVQKGSEPLGISIVSGEKG-----GIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQ-CD   91 (117)
T ss_dssp             CCEEEEEECSSCCCCEEEEECTTS-----CEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSC-CS
T ss_pred             CCEEEEEEeCCCccCEEEEccCCC-----CEEEEEEecCChHHhCC-CCCCCEeeeECCcccCCCCHHHHHHHHHCC-CC
Confidence            457888999888999999987643     69999999999999998 999999999999999999999999999987 66


Q ss_pred             ceeEEEEeccccC
Q psy6405         207 TIQDIKALGYDLN  219 (548)
Q Consensus       207 ~V~LlV~RilDLr  219 (548)
                      .+++++.+.....
T Consensus        92 ~v~l~v~~~p~~~  104 (117)
T d1uita_          92 TITILAQYNPHVH  104 (117)
T ss_dssp             EEEEEECCCSCCC
T ss_pred             eEEEEEEECCcce
Confidence            7888887754433

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=4.4e-11  Score=102.21  Aligned_cols=86  Identities=26%  Similarity=0.469  Sum_probs=69.6

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhc-CCCCCCCEEEEECCeeccCccHHHHHHHhhC-
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRD-GRLQKGDRILSINGKSMKGLTHKESLAILKR-  125 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqA-GrLq~GDrILaINGv~V~~~s~~~aV~~lk~-  125 (548)
                      ..++++|.+.++ +.++|||++.++.+. ..+++|..|.++|||+++ |+|++||+|++|||+++.++++.+++..++. 
T Consensus         6 ~~~~~~v~l~~~-~~g~lG~~l~gg~d~-~~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~   83 (106)
T d2cs5a1           6 HDNLVLIRMKPD-ENGRFGFNVKGGYDQ-KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS   83 (106)
T ss_dssp             SSCCEEEEECCC-SSSCCSEEEEEEGGG-TEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHH
T ss_pred             CCcEEEEEEEeC-CCCCccEEEEeeecC-CCCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            456788999887 477899999988753 357999999999999985 5599999999999999999999998766652 


Q ss_pred             ----CCCeEEEEEe
Q psy6405         126 ----GPPVEITLIK  135 (548)
Q Consensus       126 ----g~~VtVtV~R  135 (548)
                          ...+.+++.|
T Consensus        84 ~~~~~~~v~L~vrp   97 (106)
T d2cs5a1          84 CERHSGELMLLVRP   97 (106)
T ss_dssp             HHCCSSCEEEEEEC
T ss_pred             CCCCCcEEEEEECC
Confidence                2245555554

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.5e-11  Score=103.39  Aligned_cols=76  Identities=33%  Similarity=0.519  Sum_probs=64.8

Q ss_pred             CCCceEEEEEeCCCCCC--CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh---CCCCeEEEEEe
Q psy6405          61 PGNSVGITLAGGSDYES--KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK---RGPPVEITLIK  135 (548)
Q Consensus        61 ~~~GLGfsIagG~d~~~--~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk---~g~~VtVtV~R  135 (548)
                      ...+|||++.+|.+...  .+++|..|.++|||+++|+|++||+|++|||.++.++++.+++..++   .+..++++|.|
T Consensus        28 ~~~~lG~~i~gg~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l~v~R  107 (108)
T d2cssa1          28 SGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSR  107 (108)
T ss_dssp             CSSCSSEEEEEEEECTTSSEEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEEEEEE
T ss_pred             CCCCcCEEEeccCCCCCCCcCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEeC
Confidence            46789999998865432  37999999999999999999999999999999999999999877664   35568888877


Q ss_pred             c
Q psy6405         136 D  136 (548)
Q Consensus       136 d  136 (548)
                      +
T Consensus       108 P  108 (108)
T d2cssa1         108 P  108 (108)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=1.1e-10  Score=98.67  Aligned_cols=86  Identities=22%  Similarity=0.332  Sum_probs=71.4

Q ss_pred             CeEEEEEe-cCcceeEEEecCCCCC---------CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHH
Q psy6405         128 PVEITLIK-DGAGLGFSLEGGKDSP---------FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAW  197 (548)
Q Consensus       128 ~VtVtV~R-dGkgLGfSItgg~~s~---------lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~Eav  197 (548)
                      +.+|++.| ++.++||++.++....         ....+++|..|.++|||+++| |++||+|++|||+++.+++|.+++
T Consensus         6 ~~tV~l~r~~~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aG-L~~GD~Il~INg~~v~~~~h~evv   84 (104)
T d1q3oa_           6 EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVV   84 (104)
T ss_dssp             EEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHH
T ss_pred             eEEEEEEECCCCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEcCeEcCCCCHHHHH
Confidence            45677877 4567999998765332         112368999999999999999 999999999999999999999999


Q ss_pred             HHHHHcCCCceeEEEEec
Q psy6405         198 SLLKKLNDGTIQDIKALG  215 (548)
Q Consensus       198 elLrs~~g~~V~LlV~Ri  215 (548)
                      ++|+++ +..++++|.+.
T Consensus        85 ~~ik~~-~~~v~L~V~~~  101 (104)
T d1q3oa_          85 NMIRQG-GNTLMVKVVMV  101 (104)
T ss_dssp             HHHHHT-TTEEEEEEEEE
T ss_pred             HHHHcC-CCeEEEEEEec
Confidence            999987 66788888764

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.1e-10  Score=99.64  Aligned_cols=84  Identities=32%  Similarity=0.566  Sum_probs=68.2

Q ss_pred             eEEEEEe-cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCc
Q psy6405         129 VEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGT  207 (548)
Q Consensus       129 VtVtV~R-dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~  207 (548)
                      ..+++.| .+.++||+|.++.+..  ..+++|..|.++|+|+++|+|++||+|++|||+++.++++.+++++|++++...
T Consensus        10 ~~v~l~k~~~~~lG~~i~gg~~~~--~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~   87 (107)
T d1x6da1          10 HVTILHKEEGAGLGFSLAGGADLE--NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPR   87 (107)
T ss_dssp             EEEEEECCTTSCCSEEEECCSSSS--CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSS
T ss_pred             EEEEEEcCCCCccCEEEeeccCCC--CCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCCCE
Confidence            3455665 4578999999876542  247999999999999999999999999999999999999999999999985544


Q ss_pred             eeEEEEe
Q psy6405         208 IQDIKAL  214 (548)
Q Consensus       208 V~LlV~R  214 (548)
                      ..+++.|
T Consensus        88 ~l~v~~r   94 (107)
T d1x6da1          88 QAVIVTR   94 (107)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            4444443

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=1.7e-10  Score=101.17  Aligned_cols=95  Identities=25%  Similarity=0.338  Sum_probs=73.7

Q ss_pred             CeEEEEEec-CcceeEEEecCCCCC-CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         128 PVEITLIKD-GAGLGFSLEGGKDSP-FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       128 ~VtVtV~Rd-GkgLGfSItgg~~s~-lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      ...|++.|+ ..++||+|.++.... ....+++|..|.++|+|+++|+|++||+|++|||+++.++++.+++++|+.++ 
T Consensus        16 ~~ev~l~k~~~~glGf~i~gg~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~~-   94 (122)
T d1v5qa_          16 TTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS-   94 (122)
T ss_dssp             EEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHT-
T ss_pred             eEEEEEecCCCCccCEEEecccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcCC-
Confidence            356777774 457999999875432 22357999999999999999999999999999999999999999999999874 


Q ss_pred             CceeEEEEeccccCCCCC
Q psy6405         206 GTIQDIKALGYDLNSLGY  223 (548)
Q Consensus       206 ~~V~LlV~RilDLr~~~~  223 (548)
                      ..+.+++.+..+......
T Consensus        95 ~~~~l~l~~~~~~~~~~~  112 (122)
T d1v5qa_          95 ITSKVTLEIEFDVAESVI  112 (122)
T ss_dssp             TTTCEEEEEEEECCCSCC
T ss_pred             CceEEEEEEeccCCCCcc
Confidence            344555555444443333

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=1.2e-10  Score=97.97  Aligned_cols=84  Identities=27%  Similarity=0.420  Sum_probs=67.5

Q ss_pred             eEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC---C
Q psy6405         129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN---D  205 (548)
Q Consensus       129 VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~---g  205 (548)
                      ..+++.+ ..++||+|.++.+...+ .+++|++|.++|+|+++|+|++||+|++|||+++.++++.+++++|+.+.   +
T Consensus        10 ~~v~~~~-~~glG~~i~gg~~~~~~-~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~   87 (96)
T d1wi4a1          10 RVITVTK-ETGLGLKILGGINRNEG-PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSE   87 (96)
T ss_dssp             EEEEECC-SSCCCEEEEECSSSSSC-SSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSS
T ss_pred             EEEEecC-CCccCEEEEeccCCCCC-CCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCC
Confidence            3444444 45799999987654322 36899999999999999999999999999999999999999999999873   3


Q ss_pred             CceeEEEEe
Q psy6405         206 GTIQDIKAL  214 (548)
Q Consensus       206 ~~V~LlV~R  214 (548)
                      .++++.+.|
T Consensus        88 ~~vel~~~R   96 (96)
T d1wi4a1          88 SPWEIAFIR   96 (96)
T ss_dssp             SCEEEEEEC
T ss_pred             CeEEEEEEC
Confidence            456665543

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=9.4e-11  Score=96.99  Aligned_cols=80  Identities=24%  Similarity=0.379  Sum_probs=68.4

Q ss_pred             CeEEEEEe-cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         128 PVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       128 ~VtVtV~R-dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      +..|++.| .+.++||+|..+...     +++|..|.++|||+++|+|++||+|++|||+++.++++.+++++|+++ ..
T Consensus         2 ~R~V~l~k~~~~~lG~~l~~~~~~-----~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~-~~   75 (88)
T d1kwaa_           2 SRLVQFQKNTDEPMGITLKMNELN-----HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREM-RG   75 (88)
T ss_dssp             CEEEEEEECSSSCCCEEEECSCGG-----GEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHC-CE
T ss_pred             cEEEEEEeCCCCCccEEEEEcCCC-----CEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcC-CC
Confidence            45688887 556899999876433     589999999999999999999999999999999999999999999987 44


Q ss_pred             ceeEEEE
Q psy6405         207 TIQDIKA  213 (548)
Q Consensus       207 ~V~LlV~  213 (548)
                      .+++.+.
T Consensus        76 ~v~L~i~   82 (88)
T d1kwaa_          76 SITFKIV   82 (88)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEE
Confidence            6666653

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=3.2e-11  Score=106.60  Aligned_cols=83  Identities=24%  Similarity=0.540  Sum_probs=68.0

Q ss_pred             EEEEeeCCCCCceEEEEEeCCCCCC---CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC----
Q psy6405          53 VVVLHRDLPGNSVGITLAGGSDYES---KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR----  125 (548)
Q Consensus        53 tV~L~Kd~~~~GLGfsIagG~d~~~---~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~----  125 (548)
                      .|.+.+. ...+|||+|+++.+...   .+++|..|.|+|+|+++|+|++||+|++|||+++.++++.+++..++.    
T Consensus        28 ~v~l~~~-~~~glG~~i~gg~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~  106 (127)
T d1wg6a_          28 EIPLNDS-GSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSM  106 (127)
T ss_dssp             EEECSSS-TTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEccC-CCCcEeEEEEeecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhcccc
Confidence            4445454 36789999998765432   378999999999999999999999999999999999999998866653    


Q ss_pred             ----CCCeEEEEEec
Q psy6405         126 ----GPPVEITLIKD  136 (548)
Q Consensus       126 ----g~~VtVtV~Rd  136 (548)
                          ..++.++|.|.
T Consensus       107 ~~~~~~~V~L~V~R~  121 (127)
T d1wg6a_         107 EGNIRGMIQLVILRR  121 (127)
T ss_dssp             HHHHTCEEEEEEEEC
T ss_pred             cCCCCCEEEEEEeeC
Confidence                45688888874

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=1e-10  Score=99.14  Aligned_cols=81  Identities=23%  Similarity=0.489  Sum_probs=68.4

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-CC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GP  127 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-g~  127 (548)
                      ..++.|.+.|. ...+|||++..+.    .+++|..|.++|+|+++|+|++||+|++|||+++.++++.+++..++. +.
T Consensus        17 ~~i~~V~l~k~-~~~~lG~~v~~~~----~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~   91 (100)
T d1va8a1          17 ETVKIVRIEKA-RDIPLGATVRNEM----DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHG   91 (100)
T ss_dssp             EECEEEEEEEC-TTCCCCEEEEECS----SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCE
T ss_pred             ceEEEEEEEeC-CCCCccEEEEecC----CCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCCC
Confidence            45788999997 4789999998653    479999999999999999999999999999999999999999877764 33


Q ss_pred             CeEEEEE
Q psy6405         128 PVEITLI  134 (548)
Q Consensus       128 ~VtVtV~  134 (548)
                      .++++|.
T Consensus        92 ~v~L~v~   98 (100)
T d1va8a1          92 TLTFVLI   98 (100)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEE
Confidence            4555543

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=7.5e-11  Score=103.47  Aligned_cols=86  Identities=33%  Similarity=0.446  Sum_probs=69.9

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCC---CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYE---SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR  125 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~---~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~  125 (548)
                      .+.+.|.|.|+ +..+|||+|.++.+..   ..+++|..|.|+|||+++|+|++||+|++|||+++.++++.+++..++.
T Consensus        14 ~~~~ev~l~k~-~~~glGf~i~gg~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~   92 (122)
T d1v5qa_          14 TETTEVVLTAD-PVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRD   92 (122)
T ss_dssp             EEEEEEEECCC-SSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHH
T ss_pred             ceeEEEEEecC-CCCccCEEEecccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHc
Confidence            35678899887 4779999999886432   3569999999999999999999999999999999999999998877753


Q ss_pred             -CCCeEEEEEe
Q psy6405         126 -GPPVEITLIK  135 (548)
Q Consensus       126 -g~~VtVtV~R  135 (548)
                       +..+.|+|.+
T Consensus        93 ~~~~~~l~l~~  103 (122)
T d1v5qa_          93 SSITSKVTLEI  103 (122)
T ss_dssp             HTTTTCEEEEE
T ss_pred             CCCceEEEEEE
Confidence             3344454443

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.4e-11  Score=103.54  Aligned_cols=87  Identities=26%  Similarity=0.455  Sum_probs=76.3

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG  206 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~  206 (548)
                      ..++|++.|+..++||+|.++.+..   .+++|..|.++|+|+++|.|++||+|++|||+++.++++.+++++|+.+ ..
T Consensus        11 e~~~v~l~k~~~glG~~i~gg~~~~---~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~-~~   86 (103)
T d1wfva_          11 DYFTVDMEKGAKGFGFSIRGGREYK---MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSG-GR   86 (103)
T ss_dssp             CCEECCEECCTTSSSBCCEEETTTT---EEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHH-CS
T ss_pred             eEEEEEEEeCCCccCEEEEeeccCC---CCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcC-CC
Confidence            4578889998889999998766543   2589999999999999999999999999999999999999999999987 57


Q ss_pred             ceeEEEEeccc
Q psy6405         207 TIQDIKALGYD  217 (548)
Q Consensus       207 ~V~LlV~RilD  217 (548)
                      .+.+++.|...
T Consensus        87 ~v~l~v~R~~~   97 (103)
T d1wfva_          87 RVRLLLKRGTG   97 (103)
T ss_dssp             EECEEEECTTC
T ss_pred             EEEEEEEECCC
Confidence            89999988543

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.8e-10  Score=101.79  Aligned_cols=89  Identities=27%  Similarity=0.350  Sum_probs=75.0

Q ss_pred             hhCCCCeEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHH
Q psy6405         123 LKRGPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLK  201 (548)
Q Consensus       123 lk~g~~VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLr  201 (548)
                      +..+....|++.|. +.++||+|.++.+..   .+++|..|.++++|+++| |++||+|++|||+++.+++|.+++++|+
T Consensus        16 ~~~~~~~~v~l~~~~~~~lGf~i~gg~~~~---~gv~V~~V~~g~~A~~~g-L~~GD~Il~INg~~v~~~s~~evv~~lr   91 (128)
T d1uf1a_          16 LQGGDEKKVNLVLGDGRSLGLTIRGGAEYG---LGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLK   91 (128)
T ss_dssp             CCCSSEEEEEEECCSSCCCCEEEECCTTTT---CCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHT
T ss_pred             cCCCCeEEEEEEECCCCccCEEEEeeccCC---CCEEEEEECCCChHHhcC-CCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            34566678888875 467999999876643   369999999999999999 9999999999999999999999999998


Q ss_pred             HcCCCceeEEEEeccc
Q psy6405         202 KLNDGTIQDIKALGYD  217 (548)
Q Consensus       202 s~~g~~V~LlV~RilD  217 (548)
                      ..  ..+.++|.+...
T Consensus        92 ~~--~~v~l~v~~~~~  105 (128)
T d1uf1a_          92 SS--RHLILTVKDVGR  105 (128)
T ss_dssp             TC--SEEEEEEECCSC
T ss_pred             cC--CcEEEEEEECCc
Confidence            75  467788876544

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.3e-10  Score=95.34  Aligned_cols=76  Identities=25%  Similarity=0.365  Sum_probs=66.8

Q ss_pred             CCCeEEEEEecCcc-eeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         126 GPPVEITLIKDGAG-LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       126 g~~VtVtV~RdGkg-LGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      .++.+|++.|+..+ +||++.++          +|.+|.++|||+++| |++||+|++|||+++.+++|.+++++|+++ 
T Consensus         3 ~~pr~V~l~k~~~g~~Gf~i~~g----------~V~~v~~g~~A~~~G-l~~GD~Il~INg~~v~~~t~~~~~~ll~~~-   70 (82)
T d1r6ja_           3 MDPRTITMHKDSTGHVGFIFKNG----------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTS-   70 (82)
T ss_dssp             TCCEEEEEECCTTSCCCEEEETT----------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHS-
T ss_pred             CCCEEEEEEeCCCCCcCEEEEEE----------EEEEECCCChHHhcC-cCCCCEEEEeCCeEEeeCCHHHHHHHHHcC-
Confidence            46788999997654 99999743          589999999999999 999999999999999999999999999987 


Q ss_pred             CCceeEEEE
Q psy6405         205 DGTIQDIKA  213 (548)
Q Consensus       205 g~~V~LlV~  213 (548)
                      +..+++++.
T Consensus        71 ~~~v~l~v~   79 (82)
T d1r6ja_          71 GTVVTITIM   79 (82)
T ss_dssp             CSEEEEEEE
T ss_pred             CCEEEEEEE
Confidence            567777764

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.2e-10  Score=101.24  Aligned_cols=86  Identities=27%  Similarity=0.464  Sum_probs=70.4

Q ss_pred             EEEEEeeCC-----CCCceEEEEEeCCCCC----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHH
Q psy6405          52 SVVVLHRDL-----PGNSVGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAI  122 (548)
Q Consensus        52 ~tV~L~Kd~-----~~~GLGfsIagG~d~~----~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~  122 (548)
                      ..+.+.|+.     ...+|||+|.+|.+..    ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..
T Consensus        14 ~~v~l~r~~~~~~~~g~glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~   93 (117)
T d1ujda_          14 ARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSI   93 (117)
T ss_dssp             EEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             eeEEEEecccccccCCcccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHH
Confidence            456676653     2467999999876543    2368999999999999999999999999999999999999999887


Q ss_pred             hhC-CCCeEEEEEecC
Q psy6405         123 LKR-GPPVEITLIKDG  137 (548)
Q Consensus       123 lk~-g~~VtVtV~RdG  137 (548)
                      ++. +..+.++|.|..
T Consensus        94 i~~~~~~v~l~v~r~~  109 (117)
T d1ujda_          94 ISQQSGEAEICVRLDL  109 (117)
T ss_dssp             HSCCSSCEEEEEESSC
T ss_pred             HHcCCCeEEEEEEECC
Confidence            764 456888888753

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=5.4e-11  Score=102.19  Aligned_cols=79  Identities=28%  Similarity=0.459  Sum_probs=69.1

Q ss_pred             cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC-CCceeEEEEe
Q psy6405         136 DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN-DGTIQDIKAL  214 (548)
Q Consensus       136 dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~-g~~V~LlV~R  214 (548)
                      .+.++||+|.++.....+..+++|..|.++|+|+++|.|++||+|++|||+++.+++|.+++++|+.+. +..+++++.|
T Consensus        28 ~~~~lG~~i~gg~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l~v~R  107 (108)
T d2cssa1          28 SGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSR  107 (108)
T ss_dssp             CSSCSSEEEEEEEECTTSSEEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEEEEEE
T ss_pred             CCCCcCEEEeccCCCCCCCcCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEeC
Confidence            456799999987665555557999999999999999999999999999999999999999999999864 4578888876

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=1.3e-10  Score=101.53  Aligned_cols=89  Identities=37%  Similarity=0.556  Sum_probs=75.0

Q ss_pred             CCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-
Q psy6405         125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-  203 (548)
Q Consensus       125 ~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-  203 (548)
                      .+..+.+...+...++||+|.++.+...+  +++|.+|.++|+|+++|+|++||+|++|||+++.+++|.+++++|+.+ 
T Consensus        15 ~~~~v~~~~~~~~~~lG~~i~gg~d~~~~--~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~   92 (118)
T d1v6ba_          15 AGKDVRLLRIKKEGSLDLALEGGVDSPVG--KVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAW   92 (118)
T ss_dssp             SSCCEEEEEEESCSCCCCEEEEBTTSSSC--SEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHH
T ss_pred             CCceEEEEEecCCCCCCEEEEeeecCCCC--CEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcc
Confidence            35566666666667899999988765432  699999999999999999999999999999999999999999999975 


Q ss_pred             --CCCceeEEEEec
Q psy6405         204 --NDGTIQDIKALG  215 (548)
Q Consensus       204 --~g~~V~LlV~Ri  215 (548)
                        .+..|++++.|.
T Consensus        93 ~~~~~~V~L~v~r~  106 (118)
T d1v6ba_          93 NQGGDWIDLVVAVC  106 (118)
T ss_dssp             HHTCSEEEEEEECC
T ss_pred             cCCCCEEEEEEEeC
Confidence              355688888774

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.9e-10  Score=99.69  Aligned_cols=89  Identities=24%  Similarity=0.371  Sum_probs=74.4

Q ss_pred             CCCeEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         126 GPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       126 g~~VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      ..+..|++.|. +.++||+|..+....  ..+++|..|.++|+|+++|+|++||+|++||++++.++++.+++++|+.+ 
T Consensus        14 ~~p~~V~l~k~~~~~lGi~i~~~~~~~--~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~-   90 (117)
T d1v62a_          14 SGPLMVEIVKTPGSALGISLTTTSLRN--KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASI-   90 (117)
T ss_dssp             SSSEEEEEECCTTCCCCCEEEEECCSS--SCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSC-
T ss_pred             CCCEEEEEEcCCCCCcCEEEEeeccCC--CCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcC-
Confidence            34577888875 457999998755331  24699999999999999999999999999999999999999999999987 


Q ss_pred             CCceeEEEEeccc
Q psy6405         205 DGTIQDIKALGYD  217 (548)
Q Consensus       205 g~~V~LlV~RilD  217 (548)
                      ...+++++.+...
T Consensus        91 ~~~v~l~v~~~~~  103 (117)
T d1v62a_          91 SEKVRLEILPVPQ  103 (117)
T ss_dssp             SSEEEEEECCBTT
T ss_pred             CCcEEEEEEECCC
Confidence            5678888876544

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.11  E-value=9.4e-11  Score=96.57  Aligned_cols=83  Identities=17%  Similarity=0.318  Sum_probs=66.8

Q ss_pred             CCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHH-HHHhhCCCCeEEEEEe-cCcc
Q psy6405          62 GNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES-LAILKRGPPVEITLIK-DGAG  139 (548)
Q Consensus        62 ~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~a-V~~lk~g~~VtVtV~R-dGkg  139 (548)
                      +.+||+.+....+  ..+++|..|.|+|||+++| |++||+|++|||+++.++.+... +....++..+.++|.| ++..
T Consensus         2 ~~~LGv~~~~~~~--~~Gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~i~~~~~~~~~i~~~~~g~~v~l~v~r~~g~~   78 (88)
T d2z9ia1           2 HASLGVQVTNDKD--TLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSADALVAAVRSKAPGATVALTFQDPSGGS   78 (88)
T ss_dssp             CEECCEEEECCC---CCSEEEEEECTTSTTGGGT-CCTTCEEEEETTEECCSHHHHHHHHHTSCTTCEEEEEEEETTTEE
T ss_pred             CCEEeEEEEecCC--CCcEEEEEECCCCHHHHcC-CCCCCEEEEeCCCcCCcHHHHHHHHHhCCCCCEEEEEEEECCCCE
Confidence            4678888885543  4689999999999999999 99999999999999999877654 3455678899999998 4566


Q ss_pred             eeEEEecC
Q psy6405         140 LGFSLEGG  147 (548)
Q Consensus       140 LGfSItgg  147 (548)
                      ..++++.+
T Consensus        79 ~~v~vtL~   86 (88)
T d2z9ia1          79 RTVQVTLG   86 (88)
T ss_dssp             EEEEEECE
T ss_pred             EEEEEEEc
Confidence            66777643

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=2.2e-11  Score=105.17  Aligned_cols=79  Identities=30%  Similarity=0.431  Sum_probs=66.7

Q ss_pred             CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC--C
Q psy6405          49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR--G  126 (548)
Q Consensus        49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~--g  126 (548)
                      ..+++|.|.|.  ..+|||++.++     .+++|..|.++|||+++| |++||+|++|||++|.++++.+++..++.  +
T Consensus        14 ~~pr~v~l~k~--~~g~Gf~i~g~-----~~v~V~~V~~~spA~~~G-L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~   85 (111)
T d1vaea_          14 SPPRGIHFTVE--EGDLGFTLRGN-----TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGG   85 (111)
T ss_dssp             CCCCCCCEECC--SSCCSCCEESS-----SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTT
T ss_pred             CCCEEEEEEEC--CCccCEEEECC-----ccEEEEEEcCCChHHhcc-cCcccEEEEECCEEcCCCCHHHHHHHHHcCCC
Confidence            44678889987  46899999864     368999999999999999 99999999999999999999998877763  3


Q ss_pred             CCeEEEEEe
Q psy6405         127 PPVEITLIK  135 (548)
Q Consensus       127 ~~VtVtV~R  135 (548)
                      ..+.|+|.+
T Consensus        86 ~~v~l~v~~   94 (111)
T d1vaea_          86 EEVEMKVVS   94 (111)
T ss_dssp             SEECEEEEC
T ss_pred             CeEEEEEEC
Confidence            456676664

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.5e-10  Score=93.22  Aligned_cols=74  Identities=26%  Similarity=0.401  Sum_probs=62.3

Q ss_pred             EEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         131 ITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       131 VtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      |++.|. +.++||+|..+.... ...+++|.+|.++|||+++|+|++||+|++|||+++.+++|.+++++|++++.
T Consensus         2 V~l~k~~g~~LGi~i~~~~~~~-~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~   76 (85)
T d1x45a1           2 VFIEKQKGEILGVVIVESGWGS-ILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKN   76 (85)
T ss_dssp             EEEECCTTSCCCEEEECCTTTS-SSCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTT
T ss_pred             eEEEeCCCCccCEEEEeCCCCC-CCCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            667774 678999997543221 12379999999999999999999999999999999999999999999998743

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.3e-10  Score=96.46  Aligned_cols=84  Identities=29%  Similarity=0.411  Sum_probs=69.1

Q ss_pred             eEEEEEecCcceeEEEecCCCCC-----CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         129 VEITLIKDGAGLGFSLEGGKDSP-----FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       129 VtVtV~RdGkgLGfSItgg~~s~-----lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      +.|++.| +.++||+|.++....     .+..+++|+.|.++|||++  +|++||+|++|||+++.+++|.+++++|+++
T Consensus        13 v~v~~~~-~~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~--~L~~GD~Il~VNg~~v~~~t~~eav~~l~~~   89 (103)
T d2h3la1          13 IRVRVEK-DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTF   89 (103)
T ss_dssp             EEEEEEC-SSSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTT--TCCTTCEEEEETTEECSSCCHHHHHHHHHHC
T ss_pred             EEEEEcc-CCCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHh--ccCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            5555555 457999999875432     1235799999999999985  4999999999999999999999999999997


Q ss_pred             CCCceeEEEEecc
Q psy6405         204 NDGTIQDIKALGY  216 (548)
Q Consensus       204 ~g~~V~LlV~Ril  216 (548)
                       +..++++|.|..
T Consensus        90 -~~~v~L~V~R~~  101 (103)
T d2h3la1          90 -QNTVELIIVREV  101 (103)
T ss_dssp             -CSEEEEEEEEEE
T ss_pred             -CCeEEEEEEEEC
Confidence             568899988853

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=7.8e-11  Score=98.71  Aligned_cols=82  Identities=27%  Similarity=0.392  Sum_probs=69.6

Q ss_pred             eEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCce
Q psy6405         129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI  208 (548)
Q Consensus       129 VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V  208 (548)
                      ++|++ +.+.++||+|.++.+..   .+++|..|.++|||+++| |++||+|++|||+++.+++|.+++++|+.+ +..+
T Consensus         8 ~tv~~-~g~~~~Gf~i~gg~d~~---~~i~V~~v~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~-~~~v   81 (94)
T d1vb7a_           8 LTVDV-AGPAPWGFRISGGRDFH---TPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQS-ASPL   81 (94)
T ss_dssp             EEEEE-CSSSCCSBCCEEETTTT---EEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSSE
T ss_pred             EEEEE-ECCCcCCEEEEeeccCC---CCEEEEeccCCChhhhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeE
Confidence            44444 34578999999876542   368999999999999988 999999999999999999999999999987 5789


Q ss_pred             eEEEEecc
Q psy6405         209 QDIKALGY  216 (548)
Q Consensus       209 ~LlV~Ril  216 (548)
                      .|+|.|..
T Consensus        82 ~L~V~R~~   89 (94)
T d1vb7a_          82 RLQLDRSS   89 (94)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEECC
Confidence            99998853

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.4e-10  Score=97.96  Aligned_cols=87  Identities=28%  Similarity=0.323  Sum_probs=69.5

Q ss_pred             CCeEEEEEecC-cceeEEEecCCCCCC-CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         127 PPVEITLIKDG-AGLGFSLEGGKDSPF-GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       127 ~~VtVtV~RdG-kgLGfSItgg~~s~l-G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      ....|++.|+. .++||+|.++....- ...+++|.+|.++|||+++|+|++||+|++|||+++.+++|.+++++|+.+.
T Consensus         8 e~~~V~l~~~~~~~lG~~i~gg~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~~~   87 (99)
T d1x5ra1           8 ETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAA   87 (99)
T ss_dssp             EEEEEEECCCTTTCCCEEEECCSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHHHH
T ss_pred             eeEEEEEEcCCCCCcCEEEEEeccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            34567777754 679999998754321 1247999999999999999999999999999999999999999999999763


Q ss_pred             -CCceeEEEE
Q psy6405         205 -DGTIQDIKA  213 (548)
Q Consensus       205 -g~~V~LlV~  213 (548)
                       ...+.+.+.
T Consensus        88 ~~~~l~l~v~   97 (99)
T d1x5ra1          88 LAHKVVLEVE   97 (99)
T ss_dssp             TTTCEEEEEE
T ss_pred             CCCEEEEEEE
Confidence             334555443

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.3e-10  Score=100.99  Aligned_cols=88  Identities=32%  Similarity=0.567  Sum_probs=72.7

Q ss_pred             eEEEEEec-------CcceeEEEecCCCCC--CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHH
Q psy6405         129 VEITLIKD-------GAGLGFSLEGGKDSP--FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSL  199 (548)
Q Consensus       129 VtVtV~Rd-------GkgLGfSItgg~~s~--lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~Eavel  199 (548)
                      ..+.+.|+       +.++||+|.++...+  .+..+++|..|.++|+|+++|+|++||+|++|||+++.+++|.+++++
T Consensus        14 ~~v~l~r~~~~~~~~g~glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~   93 (117)
T d1ujda_          14 ARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSI   93 (117)
T ss_dssp             EEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             eeEEEEecccccccCCcccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHH
Confidence            45666664       456999998765432  233479999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCceeEEEEeccc
Q psy6405         200 LKKLNDGTIQDIKALGYD  217 (548)
Q Consensus       200 Lrs~~g~~V~LlV~RilD  217 (548)
                      |+++ ...+.++|.|...
T Consensus        94 i~~~-~~~v~l~v~r~~~  110 (117)
T d1ujda_          94 ISQQ-SGEAEICVRLDLN  110 (117)
T ss_dssp             HSCC-SSCEEEEEESSCC
T ss_pred             HHcC-CCeEEEEEEECCC
Confidence            9987 4578999988654

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=2.8e-10  Score=96.71  Aligned_cols=87  Identities=24%  Similarity=0.441  Sum_probs=72.3

Q ss_pred             CeEEEEEec-CcceeEEEecCCCCC---CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         128 PVEITLIKD-GAGLGFSLEGGKDSP---FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       128 ~VtVtV~Rd-GkgLGfSItgg~~s~---lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      ..+|++.|+ +.++||+|.++....   .+..+++|.+|.++|||+ ++ |++||+|++|||+++.++++.+++++|+++
T Consensus         8 ~~tV~l~k~~~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~-~~-L~~GD~Il~INg~~v~~~~~~ev~~ll~~~   85 (104)
T d2csja1           8 QYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQLRKS   85 (104)
T ss_dssp             EEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHHHHHS
T ss_pred             cEEEEEEeCCCCCcCEEEEcccCCCccccCCCCEEEEEECCCChhh-cC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            357888886 457999998876442   223579999999999997 55 999999999999999999999999999987


Q ss_pred             CCCceeEEEEeccc
Q psy6405         204 NDGTIQDIKALGYD  217 (548)
Q Consensus       204 ~g~~V~LlV~RilD  217 (548)
                       +..+.+++.|...
T Consensus        86 -~~~v~l~V~R~~~   98 (104)
T d2csja1          86 -GKIAAIVVKRPRK   98 (104)
T ss_dssp             -CSEEEEEEEEEEE
T ss_pred             -CCEEEEEEEeCCC
Confidence             5689999988543

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.06  E-value=2.4e-10  Score=96.40  Aligned_cols=84  Identities=20%  Similarity=0.360  Sum_probs=68.4

Q ss_pred             eEEEEEec--CcceeEEEecCCCCC---CC---CCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy6405         129 VEITLIKD--GAGLGFSLEGGKDSP---FG---DQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLL  200 (548)
Q Consensus       129 VtVtV~Rd--GkgLGfSItgg~~s~---lG---~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelL  200 (548)
                      ..|++.|.  ..++||+|.++....   .+   ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++++|
T Consensus         4 r~V~L~k~~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l   83 (98)
T d1rzxa_           4 RRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMM   83 (98)
T ss_dssp             EEEEEECCCSSSCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEEEECCCCCcccEEEecccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHHH
Confidence            46777764  457999998654321   11   13689999999999999999999999999999999999999999999


Q ss_pred             HHcCCCceeEEEE
Q psy6405         201 KKLNDGTIQDIKA  213 (548)
Q Consensus       201 rs~~g~~V~LlV~  213 (548)
                      +++ +..+++++.
T Consensus        84 ~~~-~~~v~l~v~   95 (98)
T d1rzxa_          84 VAN-SSNLIITVK   95 (98)
T ss_dssp             HHT-CTEEEEEEE
T ss_pred             HcC-CCeEEEEEE
Confidence            987 567777764

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=2.2e-10  Score=101.17  Aligned_cols=85  Identities=22%  Similarity=0.333  Sum_probs=72.7

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC--
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR--  125 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~--  125 (548)
                      ..++..+.+.+.  ..||||++..+.    .+++|..|.++|||+++|+|++||+|++|||+++.++++.+++..++.  
T Consensus        25 ~~~~~~v~l~~g--~~GlG~~i~~~~----~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~   98 (126)
T d1wifa_          25 LNKVIQTKLTVG--NLGLGLVVIQNG----PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNIT   98 (126)
T ss_dssp             CCCEEEEEEECC--TTCCCCCEEEET----TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCC
T ss_pred             CCcEEEEEEeeC--CCcEEEEEEecC----CcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCC
Confidence            456788889887  578999998642    469999999999999999999999999999999999999998877763  


Q ss_pred             -CCCeEEEEEecCc
Q psy6405         126 -GPPVEITLIKDGA  138 (548)
Q Consensus       126 -g~~VtVtV~RdGk  138 (548)
                       +..++++|.|+..
T Consensus        99 ~g~~v~L~v~R~~~  112 (126)
T d1wifa_          99 IGTVLQIKAYRGFL  112 (126)
T ss_dssp             SSCEEEEEEESSSS
T ss_pred             CCCEEEEEEEeCCC
Confidence             5678999988643

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=1.3e-10  Score=99.00  Aligned_cols=82  Identities=30%  Similarity=0.470  Sum_probs=68.3

Q ss_pred             EEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCCeE
Q psy6405          52 SVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPPVE  130 (548)
Q Consensus        52 ~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~Vt  130 (548)
                      ..|.+...   .+|||+|.++.+. ..+++|..|.++++|++++ |++||+|++|||+++.++++.+++..++ .+..+.
T Consensus         7 ~~v~~~g~---~g~Gf~i~gg~d~-~~~v~V~~v~~g~~a~~~~-L~~GD~Il~INg~~v~~~t~~eav~li~~~~~~v~   81 (103)
T d1wf7a_           7 GSVSLVGP---APWGFRLQGGKDF-NMPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLN   81 (103)
T ss_dssp             EEEEEESS---SCCSCCEEEETTT-TEEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEE
T ss_pred             eEEEEECC---CCccEEEEcccCC-CCCEEEEecCCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            44556544   6899999998864 3579999999999999877 9999999999999999999999987765 466788


Q ss_pred             EEEEecCc
Q psy6405         131 ITLIKDGA  138 (548)
Q Consensus       131 VtV~RdGk  138 (548)
                      ++|.|...
T Consensus        82 L~v~R~~~   89 (103)
T d1wf7a_          82 MTLQRASA   89 (103)
T ss_dssp             EEECCCSC
T ss_pred             EEEEECCC
Confidence            88887553

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3e-10  Score=96.77  Aligned_cols=74  Identities=28%  Similarity=0.427  Sum_probs=64.6

Q ss_pred             eEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       129 VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      ..|.+.|.+.++||+|.++.+..  ...++|..|.++|+|+++|+|++||+|++|||+++.+++|.+++++|+.+.
T Consensus         8 ~vv~~~k~~~~lG~~i~gg~~~~--~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~   81 (103)
T d1ufxa_           8 TLVRVKKSAATLGIAIEGGANTR--QPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAF   81 (103)
T ss_dssp             EEEEEECCSSSCCEEEECBTTSS--CSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHH
T ss_pred             EEEEEEeCCCccCEEEeeecCCC--CCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHcc
Confidence            44667788889999999876542  235899999999999999999999999999999999999999999999863

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=5.3e-10  Score=95.06  Aligned_cols=86  Identities=29%  Similarity=0.497  Sum_probs=71.9

Q ss_pred             CCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND  205 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g  205 (548)
                      |..-.|++. .+.++||+|.++.+..   .+++|..|.++++|++++ |++||+|++|||+++.+++|.+++++|+.+ +
T Consensus         4 g~~~~v~~~-g~~g~Gf~i~gg~d~~---~~v~V~~v~~g~~a~~~~-L~~GD~Il~INg~~v~~~t~~eav~li~~~-~   77 (103)
T d1wf7a_           4 GSSGSVSLV-GPAPWGFRLQGGKDFN---MPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKAC-T   77 (103)
T ss_dssp             CCCEEEEEE-SSSCCSCCEEEETTTT---EEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHC-S
T ss_pred             CceeEEEEE-CCCCccEEEEcccCCC---CCEEEEecCCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-C
Confidence            444556553 5678999999876542   358999999999999877 999999999999999999999999999997 6


Q ss_pred             CceeEEEEeccc
Q psy6405         206 GTIQDIKALGYD  217 (548)
Q Consensus       206 ~~V~LlV~RilD  217 (548)
                      ..+.|++.|...
T Consensus        78 ~~v~L~v~R~~~   89 (103)
T d1wf7a_          78 GSLNMTLQRASA   89 (103)
T ss_dssp             SEEEEEECCCSC
T ss_pred             CeEEEEEEECCC
Confidence            789999988654

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.8e-10  Score=96.69  Aligned_cols=83  Identities=20%  Similarity=0.329  Sum_probs=68.8

Q ss_pred             CCCeEEEEEe-cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         126 GPPVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       126 g~~VtVtV~R-dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      ..+..|.+.+ .+.++||+|.++.+..   .+++|..|.++|||+++| |++||+|++|||+++.++++.+++++|++++
T Consensus         7 ~~~~~v~i~~~~~~glG~~i~~g~~~~---~gi~V~~V~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~   82 (101)
T d1x5na1           7 NKEKKVFISLVGSRGLGCSISSGPIQK---PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSR   82 (101)
T ss_dssp             CSSEEEEECCCSSCCCCEEEEECCSSS---CSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHCS
T ss_pred             CccEEEEEEeeCCCcccEEEeccCCCC---CCEEEEEECCCChHHhCC-CCcccEEEEECCEECCCCCHHHHHHHHhCCC
Confidence            3456677765 5778999999876542   369999999999999999 9999999999999999999999999999873


Q ss_pred             CCceeEEEEe
Q psy6405         205 DGTIQDIKAL  214 (548)
Q Consensus       205 g~~V~LlV~R  214 (548)
                        .+.+++.+
T Consensus        83 --~~~l~v~~   90 (101)
T d1x5na1          83 --SLTISIVA   90 (101)
T ss_dssp             --SEEEEECS
T ss_pred             --CEEEEEEE
Confidence              35555543

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=1.6e-10  Score=102.08  Aligned_cols=84  Identities=20%  Similarity=0.343  Sum_probs=74.1

Q ss_pred             CCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC-C
Q psy6405         127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN-D  205 (548)
Q Consensus       127 ~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~-g  205 (548)
                      ..+++++.+...++||++.....      +++|..|.++|||+++|+|++||+|++|||+++.++++.+++++|+.++ +
T Consensus        27 ~~~~v~l~~g~~GlG~~i~~~~~------~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~g  100 (126)
T d1wifa_          27 KVIQTKLTVGNLGLGLVVIQNGP------YLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIG  100 (126)
T ss_dssp             CEEEEEEECCTTCCCCCEEEETT------EEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSS
T ss_pred             cEEEEEEeeCCCcEEEEEEecCC------cEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCCC
Confidence            45778888888899999976532      4899999999999999999999999999999999999999999999874 6


Q ss_pred             CceeEEEEecc
Q psy6405         206 GTIQDIKALGY  216 (548)
Q Consensus       206 ~~V~LlV~Ril  216 (548)
                      ..|++++.|..
T Consensus       101 ~~v~L~v~R~~  111 (126)
T d1wifa_         101 TVLQIKAYRGF  111 (126)
T ss_dssp             CEEEEEEESSS
T ss_pred             CEEEEEEEeCC
Confidence            78999999873

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=1.1e-09  Score=92.64  Aligned_cols=77  Identities=29%  Similarity=0.491  Sum_probs=65.8

Q ss_pred             eEEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCc
Q psy6405         129 VEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGT  207 (548)
Q Consensus       129 VtVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~  207 (548)
                      ..|.+.|. +.++||++....      .+++|.+|.++|+|+++|+|++||+|++|||+++.++++.+++++|+++. ..
T Consensus        20 ~~V~l~k~~~~~lG~~v~~~~------~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~-~~   92 (100)
T d1va8a1          20 KIVRIEKARDIPLGATVRNEM------DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH-GT   92 (100)
T ss_dssp             EEEEEEECTTCCCCEEEEECS------SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-EE
T ss_pred             EEEEEEeCCCCCccEEEEecC------CCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCC-Ce
Confidence            45677775 457999997653      25999999999999999999999999999999999999999999999984 45


Q ss_pred             eeEEE
Q psy6405         208 IQDIK  212 (548)
Q Consensus       208 V~LlV  212 (548)
                      +++.+
T Consensus        93 v~L~v   97 (100)
T d1va8a1          93 LTFVL   97 (100)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66655

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=5.4e-10  Score=94.73  Aligned_cols=85  Identities=29%  Similarity=0.415  Sum_probs=69.5

Q ss_pred             CCCeEEEEEec--CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405         126 GPPVEITLIKD--GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL  203 (548)
Q Consensus       126 g~~VtVtV~Rd--GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~  203 (548)
                      +....|+|.|.  ..++||+|.++.+..   .+++|..|.+++||+++| |++||+|++|||+++.++++.+++++|+..
T Consensus         7 ~~~~~v~l~r~~~~~glG~~i~gg~~~~---~~i~V~~v~~gg~A~~~g-L~~GD~Il~ING~~v~~~~~~~v~~ll~~~   82 (101)
T d1ueza_           7 GEVRLVSLRRAKAHEGLGFSIRGGSEHG---VGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGS   82 (101)
T ss_dssp             CCCEEECCCCCCTTTCSSEEEEECTTTT---CCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSS
T ss_pred             CCEEEEEEEECCCCCeeCEEEEecccCC---CCEEEEEECCCChHHhcC-CCCCcEEEEECCEECCCCCHHHHHHHHhcC
Confidence            44566777764  357999999876543   368999999999999999 999999999999999999999999999976


Q ss_pred             CCCceeEEEEecc
Q psy6405         204 NDGTIQDIKALGY  216 (548)
Q Consensus       204 ~g~~V~LlV~Ril  216 (548)
                      +  .+.++|.|..
T Consensus        83 ~--~~~l~V~~~~   93 (101)
T d1ueza_          83 K--KLVLSVYSAG   93 (101)
T ss_dssp             S--SCCEEECCCC
T ss_pred             C--CEEEEEEECC
Confidence            3  4666666543

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=1.3e-10  Score=99.03  Aligned_cols=75  Identities=23%  Similarity=0.436  Sum_probs=65.0

Q ss_pred             CCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-CCCeEEEEEecCc
Q psy6405          62 GNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKDGA  138 (548)
Q Consensus        62 ~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-g~~VtVtV~RdGk  138 (548)
                      ..+|||++.++.+. ..+++|..|.+++||+.++ |++||+|++|||+++.++++.+++..++. +..+.++|.|.+.
T Consensus        14 ~~~~Gf~l~gg~d~-~~~i~V~~v~~g~~A~~~~-L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~v~l~V~R~~~   89 (103)
T d1v5la_          14 PAPWGFRLSGGIDF-NQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET   89 (103)
T ss_dssp             SSCCSBCCEEETTT-TEEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCTT
T ss_pred             CCCCCEEEEeecCC-CCCEEEEEccCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCc
Confidence            47899999998764 3579999999999999888 99999999999999999999999877774 5678888887543

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=3.3e-10  Score=99.96  Aligned_cols=80  Identities=34%  Similarity=0.493  Sum_probs=67.1

Q ss_pred             cCcceeEEEecCCCCCCC-CCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC------CCce
Q psy6405         136 DGAGLGFSLEGGKDSPFG-DQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN------DGTI  208 (548)
Q Consensus       136 dGkgLGfSItgg~~s~lG-~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~------g~~V  208 (548)
                      ...++||+|.++.....+ ..+++|..|.++|+|+++|+|++||+|++|||+++.+++|.+++++||++.      ...|
T Consensus        35 ~~~glG~~i~gg~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~~~~~~~~V  114 (127)
T d1wg6a_          35 GSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMI  114 (127)
T ss_dssp             TTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred             CCCcEeEEEEeecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhcccccCCCCCEE
Confidence            345799999876554332 236899999999999999999999999999999999999999999999752      4578


Q ss_pred             eEEEEec
Q psy6405         209 QDIKALG  215 (548)
Q Consensus       209 ~LlV~Ri  215 (548)
                      +++|.|.
T Consensus       115 ~L~V~R~  121 (127)
T d1wg6a_         115 QLVILRR  121 (127)
T ss_dssp             EEEEEEC
T ss_pred             EEEEeeC
Confidence            8888874

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=5.3e-10  Score=95.38  Aligned_cols=85  Identities=24%  Similarity=0.366  Sum_probs=68.1

Q ss_pred             CCeEEEEEecC-cceeEEEecCCCCCCCCCCeEEEEeccCChhhhc-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405         127 PPVEITLIKDG-AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKN-GQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN  204 (548)
Q Consensus       127 ~~VtVtV~RdG-kgLGfSItgg~~s~lG~~gI~VssV~pgSpAeka-GrLq~GDrILaVNGvsV~~~t~~EavelLrs~~  204 (548)
                      ..+.|++.|+. .++||+|.++.+..   .+++|..|.++|||+++ |+|++||+|++|||+++.+++|.+++++|+.+.
T Consensus         8 ~~~~v~l~~~~~g~lG~~l~gg~d~~---~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~   84 (106)
T d2cs5a1           8 NLVLIRMKPDENGRFGFNVKGGYDQK---MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASC   84 (106)
T ss_dssp             CCEEEEECCCSSSCCSEEEEEEGGGT---EEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHH
T ss_pred             cEEEEEEEeCCCCCccEEEEeeecCC---CCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            34677777754 45999998765432   35999999999999985 669999999999999999999999999999763


Q ss_pred             ---CCceeEEEEe
Q psy6405         205 ---DGTIQDIKAL  214 (548)
Q Consensus       205 ---g~~V~LlV~R  214 (548)
                         ...+.+++.+
T Consensus        85 ~~~~~~v~L~vrp   97 (106)
T d2cs5a1          85 ERHSGELMLLVRP   97 (106)
T ss_dssp             HCCSSCEEEEEEC
T ss_pred             CCCCcEEEEEECC
Confidence               2346666654

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.2e-09  Score=87.11  Aligned_cols=71  Identities=25%  Similarity=0.456  Sum_probs=60.2

Q ss_pred             EEEEEec--CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCc
Q psy6405         130 EITLIKD--GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGT  207 (548)
Q Consensus       130 tVtV~Rd--GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~  207 (548)
                      ++.+.|+  ..++||++.++          +|.+|.++|+|+++| |++||+|++|||+++.+++|.+++++|+.+ +..
T Consensus         3 tv~l~r~~~~~~lGf~i~~g----------~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~ll~~~-~~~   70 (79)
T d1y7na1           3 TVLIRRPDLRYQLGFSVQNG----------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNA-VGE   70 (79)
T ss_dssp             EEEEEESSTTSCCCEEEETT----------EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHC-CEE
T ss_pred             EEEEEcCCCCCCcCEEEECC----------EEEEEcCCCHHHHCC-CCCCCEEEEECCEEeCCCCHHHHHHHHHcC-CCE
Confidence            5666774  35699999743          689999999999988 999999999999999999999999999987 456


Q ss_pred             eeEEE
Q psy6405         208 IQDIK  212 (548)
Q Consensus       208 V~LlV  212 (548)
                      +.+.+
T Consensus        71 v~l~v   75 (79)
T d1y7na1          71 IHMKT   75 (79)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66655

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=6e-10  Score=94.91  Aligned_cols=83  Identities=28%  Similarity=0.324  Sum_probs=70.2

Q ss_pred             eEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCce
Q psy6405         129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI  208 (548)
Q Consensus       129 VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V  208 (548)
                      ..|.+ +.+..+||+|.++.+..   .+++|..|.++++|++++ |++||+|++|||+++.+++|.+++++|+.+ ...+
T Consensus         7 ~~v~~-~g~~~~Gf~l~gg~d~~---~~i~V~~v~~g~~A~~~~-L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~-~~~v   80 (103)
T d1v5la_           7 GNVVL-PGPAPWGFRLSGGIDFN---QPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAA-SYQL   80 (103)
T ss_dssp             BCCEE-ESSSCCSBCCEEETTTT---EEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTC-CSEE
T ss_pred             ceEEE-ECCCCCCEEEEeecCCC---CCEEEEEccCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEE
Confidence            33434 56788999999876542   368999999999999888 999999999999999999999999999987 5689


Q ss_pred             eEEEEeccc
Q psy6405         209 QDIKALGYD  217 (548)
Q Consensus       209 ~LlV~RilD  217 (548)
                      .++|.|...
T Consensus        81 ~l~V~R~~~   89 (103)
T d1v5la_          81 CLKIDRAET   89 (103)
T ss_dssp             ECEECCCTT
T ss_pred             EEEEEECCc
Confidence            999988543

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=98.91  E-value=2.2e-09  Score=89.21  Aligned_cols=75  Identities=28%  Similarity=0.360  Sum_probs=63.6

Q ss_pred             cceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEecc
Q psy6405         138 AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGY  216 (548)
Q Consensus       138 kgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ril  216 (548)
                      .++|+++.......   .+++|.+|.++|||+++| |++||+|++|||+++.++++.+++++|+..++.++.+.+.|..
T Consensus         5 ~GiGi~i~~~~~~~---~~v~V~~v~~gsPA~~AG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~g   79 (92)
T d1fc6a3           5 TGVGLEITYDGGSG---KDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPG   79 (92)
T ss_dssp             BBCSEEEEECTTCS---SCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETT
T ss_pred             EEEEEEEEEcCCCC---ceEEEEEecCCCChhHHh-hHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEECC
Confidence            35677775543221   258999999999999999 9999999999999999999999999999877889999999854

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.9e-09  Score=94.24  Aligned_cols=84  Identities=25%  Similarity=0.343  Sum_probs=67.3

Q ss_pred             EEEEEe--cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCc
Q psy6405         130 EITLIK--DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGT  207 (548)
Q Consensus       130 tVtV~R--dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~  207 (548)
                      .|++.|  ...++||+|.++.+.. ...+++|..|.++|||+++|+|++||+|++|||+++.++  .+++.+++...+..
T Consensus        22 ~V~l~k~~~~~~lG~~i~~~~~~~-~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~--~~~~~~l~~~~~~~   98 (124)
T d1wh1a_          22 EVDLYRMNSQDKLGLTVCYRTDDE-DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNR--EEAVALLTSEENKN   98 (124)
T ss_dssp             CBCCCCSSTTCCCCEEEECCCCCS-SCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSH--HHHHHHHTCSSCCS
T ss_pred             EEEEEECCCCCcccEEEEecCCCC-CCCCEEEEEECCCChhhhhcccCCCCEEEEECCEECCCH--HHHHHHHhhCCCCc
Confidence            455556  3457999998765432 224799999999999999999999999999999999865  47788888776778


Q ss_pred             eeEEEEecc
Q psy6405         208 IQDIKALGY  216 (548)
Q Consensus       208 V~LlV~Ril  216 (548)
                      |.+++.|..
T Consensus        99 v~l~v~r~~  107 (124)
T d1wh1a_          99 FSLLIARPE  107 (124)
T ss_dssp             CCEEEEECS
T ss_pred             EEEEEEeCC
Confidence            888888753

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4.2e-09  Score=88.19  Aligned_cols=82  Identities=26%  Similarity=0.323  Sum_probs=64.1

Q ss_pred             CCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC-
Q psy6405         126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN-  204 (548)
Q Consensus       126 g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~-  204 (548)
                      ...++|++.|...++||+|.++...      .++..+   .+++..+.|++||+|++|||+++.+++|.+++++||+.+ 
T Consensus         9 ~e~~~v~l~k~~~glGf~i~g~~~~------~~~~~~---~~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~~   79 (96)
T d1ujva_           9 AELMTLTIVKGAQGFGFTIADSPTG------QRVKQI---LDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPI   79 (96)
T ss_dssp             CCCEEEEEECCSSSSSEEEEEETTE------EEEEEE---SCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCT
T ss_pred             ceEEEEEEEeCCCcccEEEEeeCCC------ceEeec---cCcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            3457899999888999999876532      333333   234443449999999999999999999999999999875 


Q ss_pred             CCceeEEEEecc
Q psy6405         205 DGTIQDIKALGY  216 (548)
Q Consensus       205 g~~V~LlV~Ril  216 (548)
                      +..+++++.|..
T Consensus        80 g~~v~l~v~R~~   91 (96)
T d1ujva_          80 GSETSLIIHRGS   91 (96)
T ss_dssp             TSEEEEEEECCS
T ss_pred             CCEEEEEEEECC
Confidence            568999998853

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=5.1e-09  Score=87.63  Aligned_cols=80  Identities=24%  Similarity=0.449  Sum_probs=61.9

Q ss_pred             CCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC--
Q psy6405          48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR--  125 (548)
Q Consensus        48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~--  125 (548)
                      ..++++|.+.|.  ..+|||+++++.+    ...|..+.  .++..++ |++||+|++|||+++.++++.+++..++.  
T Consensus         8 ~~e~~~v~l~k~--~~glGf~i~g~~~----~~~~~~~~--~~~~~~~-L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~   78 (96)
T d1ujva_           8 QAELMTLTIVKG--AQGFGFTIADSPT----GQRVKQIL--DIQGCPG-LCEGDLIVEINQQNVQNLSHTEVVDILKDCP   78 (96)
T ss_dssp             CCCCEEEEEECC--SSSSSEEEEEETT----EEEEEEES--CGGGSTT-CCSSCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             CceEEEEEEEeC--CCcccEEEEeeCC----CceEeecc--CcccccC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            466789999998  4689999998754    23333333  2444455 99999999999999999999999888874  


Q ss_pred             -CCCeEEEEEec
Q psy6405         126 -GPPVEITLIKD  136 (548)
Q Consensus       126 -g~~VtVtV~Rd  136 (548)
                       +..++++|.|.
T Consensus        79 ~g~~v~l~v~R~   90 (96)
T d1ujva_          79 IGSETSLIIHRG   90 (96)
T ss_dssp             TTSEEEEEEECC
T ss_pred             CCCEEEEEEEEC
Confidence             56788888884

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=5.5e-09  Score=87.21  Aligned_cols=67  Identities=24%  Similarity=0.424  Sum_probs=59.3

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEEecC
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGG  147 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg  147 (548)
                      .+++|..|.++|||+++| |++||.|++|||++|.++++..  ..+++++.+.++|.|+++.+.++|++.
T Consensus        31 ~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~V~s~~dl~--~~l~~g~~v~l~v~R~g~~~~~~v~pe   97 (100)
T d1lcya1          31 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNAEDVY--EAVRTQSQLAVQIRRGRETLTLYVTPE   97 (100)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSHHHHH--HHHTTCSSEEEEEEETTEEEEEEECCE
T ss_pred             CcEEEEEECCCchHhhcC-CCCCcEEEEECCEEcCCHHHHH--HHhcCCCEEEEEEEECCEEEEEEEEee
Confidence            579999999999999999 9999999999999999887654  445689999999999999988888753

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.71  E-value=1.9e-08  Score=83.79  Aligned_cols=78  Identities=18%  Similarity=0.259  Sum_probs=62.0

Q ss_pred             CceEEEEEeCCCCCCCCeEEEEEcCC--------ChhhhcCCC-CCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEE
Q psy6405          63 NSVGITLAGGSDYESKEITVHKVISG--------TPADRDGRL-QKGDRILSINGKSMKGLTHKESLAILKRGPPVEITL  133 (548)
Q Consensus        63 ~GLGfsIagG~d~~~~gVvVs~V~pG--------SPAaqAGrL-q~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV  133 (548)
                      +++|+.+...    +++++|..|.+|        |||+++| | ++||+|++|||+++..+........-..+..+.|+|
T Consensus         1 G~lG~d~~~~----~~~~~I~~i~~G~~~~~~~~sPa~~aG-l~k~GD~I~~IdG~~v~~~~~~~~~l~g~~G~~V~L~i   75 (91)
T d1k32a1           1 GRIACDFKLD----GDHYVVAKAYAGDYSNEGEKSPIFEYG-IDPTGYLIEDIDGETVGAGSNIYRVLSEKAGTSARIRL   75 (91)
T ss_dssp             CBCSEEEEEE----TTEEEEEEECBSCTTSTTCBCGGGGGT-CCCTTCEEEEETTEECBTTBCHHHHHHTTTTSEEEEEE
T ss_pred             CcccEEEEEE----CCeEEEEEEecCCCCCcccCChhHhcC-CCCCCCEEEEECCEeecCcceeEEEEecCCCCEEEEEE
Confidence            3577777632    458999999987        9999999 8 899999999999999987665555556789999999


Q ss_pred             EecCcc-eeEEEe
Q psy6405         134 IKDGAG-LGFSLE  145 (548)
Q Consensus       134 ~RdGkg-LGfSIt  145 (548)
                      .|.+.. ..+.|+
T Consensus        76 ~R~g~~~r~~~V~   88 (91)
T d1k32a1          76 SGKGGDKRDLMID   88 (91)
T ss_dssp             ECSSSCEEEEEEE
T ss_pred             EeCCCCEEEEEEE
Confidence            997654 455553

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=98.64  E-value=1.9e-08  Score=82.75  Aligned_cols=67  Identities=16%  Similarity=0.201  Sum_probs=59.0

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeEEEe
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGFSLE  145 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGfSIt  145 (548)
                      .++.|..+.++|+|+++| |++||.|++|||.++.++.+.. .+....++..++++|.|+|+...++|+
T Consensus        19 ~G~~v~~v~~~s~~~~aG-l~~GDiI~~ing~~v~~~~~~~~~~~~~~~~~~~~l~v~R~g~~~~i~v~   86 (87)
T d2i6va1          19 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDGQQHDVYIQ   86 (87)
T ss_dssp             EEEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTCHHHHHHHHHTGGGCSEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEecCCCCCHHHHCC-CCCCCEEEEECCEEeecHHHHHHHHHhhccccccEEEEEECCEEEEEEEE
Confidence            367888899999999999 9999999999999999998766 455667899999999999998888774

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=1.3e-08  Score=83.53  Aligned_cols=63  Identities=22%  Similarity=0.409  Sum_probs=52.7

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCccee
Q psy6405          77 SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLG  141 (548)
Q Consensus        77 ~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLG  141 (548)
                      ..+++|..|.++|||+++| |++||+|++|||+++.++.+...+.. ..+..+.++|.|+++.+.
T Consensus        24 ~~Gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~~~~~~~~~l~-~~~~~v~l~v~R~~~~~~   86 (88)
T d1ky9b2          24 DQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKNIAELRKVLD-SKPSVLALNIQRGDSTIY   86 (88)
T ss_dssp             TSCCCBCCCCSSCTTGGGT-CCSSCEEEEETTEECSSHHHHHHHTT-TCCSCCCEEEESSSCEEE
T ss_pred             CCeEEEEEECCCCHHHHcC-CCCCcEEEEECCEEcCCHHHHHHHHH-hCCCEEEEEEEECCEEEE
Confidence            4689999999999999999 99999999999999998876654332 356679999999887653

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=4.2e-09  Score=87.53  Aligned_cols=66  Identities=24%  Similarity=0.506  Sum_probs=57.5

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeEEE
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGFSL  144 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGfSI  144 (548)
                      .+++|..|.++|||+++| |++||+|++|||.+|.++.+.. .+...+++..+.++|.|+++.+.++|
T Consensus        27 ~Gv~V~~V~~~spA~~aG-l~~gDvI~~i~g~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v   93 (94)
T d1ky9a1          27 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNL   93 (94)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSSHHHHHHTTSSBTTCCCEEEEESSSCEEECCC
T ss_pred             CCcEEEECCCChhHHHhC-CCcccEEEEECCEEeCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEE
Confidence            589999999999999999 9999999999999999998766 44455678999999999988776654

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=5.9e-09  Score=87.53  Aligned_cols=69  Identities=22%  Similarity=0.365  Sum_probs=56.2

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeEEEecC
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGFSLEGG  147 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGfSItgg  147 (548)
                      .+++|.+|.++|||+++| |++||+|++|||++|.++.+.. .+.....++.+.++|.|+++.+.++|+.+
T Consensus        26 ~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~   95 (99)
T d1sota1          26 QGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQ   95 (99)
T ss_dssp             -CEECCCCCSSSTTTSSS-CCTTCEECBSSSSBCCCSHHHHHHHHHSCTTCEEEECC-----CCCEEEECE
T ss_pred             CccEEEEecCCCCHHHcC-CCcceEEEEECCEecccHHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEEe
Confidence            478999999999999999 9999999999999999998765 45667788999999999999888888754

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.48  E-value=7.5e-08  Score=81.41  Aligned_cols=66  Identities=27%  Similarity=0.343  Sum_probs=54.1

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHH-HHHhhCCCCeEEEEEecCcceeEEEe
Q psy6405          78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES-LAILKRGPPVEITLIKDGAGLGFSLE  145 (548)
Q Consensus        78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~a-V~~lk~g~~VtVtV~RdGkgLGfSIt  145 (548)
                      .+++|..|.++|||++ + |++||+|++|||+++.++.+... +...++|+.++|+|.|++..+.+...
T Consensus         3 ~Gv~V~~V~~~sPA~~-~-L~~GD~I~~ing~~v~~~~~l~~~i~~~~~G~~v~l~v~R~~~~~~l~~~   69 (103)
T d2hgaa1           3 DGVQIDSVVPGSPASK-V-LTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITTDQGTFHLKTGRN   69 (103)
T ss_dssp             CCEEEEEECSSSGGGG-T-SCTTCEEEEETTEECSSHHHHHHHHTTCCTTCEEEEEETTEEEEEECCBC
T ss_pred             CcEEEEEECCCChHHh-c-CCCCCEEEEECCEEcCCHHHHHHHHhhCCCCCEEEEEEEECCEEEEEEec
Confidence            4799999999999985 7 99999999999999999987764 44556799999999997654444333

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.41  E-value=3.4e-07  Score=74.74  Aligned_cols=70  Identities=16%  Similarity=0.284  Sum_probs=56.7

Q ss_pred             ceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEec
Q psy6405         139 GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALG  215 (548)
Q Consensus       139 gLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~Ri  215 (548)
                      .+|+.+......    .+++|.+|.++|||+++| |++||+|++|||.++.++.  ++...++.. ++..+.+++.|.
T Consensus         4 ~LGv~~~~~~~~----~Gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~i~~~~--~~~~~i~~~~~g~~v~l~v~r~   74 (88)
T d2z9ia1           4 SLGVQVTNDKDT----LGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSAD--ALVAAVRSKAPGATVALTFQDP   74 (88)
T ss_dssp             ECCEEEECCC-C----CSEEEEEECTTSTTGGGT-CCTTCEEEEETTEECCSHH--HHHHHHHTSCTTCEEEEEEEET
T ss_pred             EEeEEEEecCCC----CcEEEEEECCCCHHHHcC-CCCCCEEEEeCCCcCCcHH--HHHHHHHhCCCCCEEEEEEEEC
Confidence            466777655433    369999999999999999 9999999999999998765  777777664 477899999883

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.20  E-value=1.9e-06  Score=71.27  Aligned_cols=58  Identities=17%  Similarity=0.115  Sum_probs=52.2

Q ss_pred             CeEEEEeccC--------ChhhhcCCC-CCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEecc
Q psy6405         156 PLTVKKIFTG--------GCAEKNGQL-KAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGY  216 (548)
Q Consensus       156 gI~VssV~pg--------SpAekaGrL-q~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ril  216 (548)
                      .+.|..|.++        |||+++| + ++||+|++|||+++.++.  +++++|+..++..|.+.+.|..
T Consensus        13 ~~~I~~i~~G~~~~~~~~sPa~~aG-l~k~GD~I~~IdG~~v~~~~--~~~~~l~g~~G~~V~L~i~R~g   79 (91)
T d1k32a1          13 HYVVAKAYAGDYSNEGEKSPIFEYG-IDPTGYLIEDIDGETVGAGS--NIYRVLSEKAGTSARIRLSGKG   79 (91)
T ss_dssp             EEEEEEECBSCTTSTTCBCGGGGGT-CCCTTCEEEEETTEECBTTB--CHHHHHHTTTTSEEEEEEECSS
T ss_pred             eEEEEEEecCCCCCcccCChhHhcC-CCCCCCEEEEECCEeecCcc--eeEEEEecCCCCEEEEEEEeCC
Confidence            3778888876        9999999 8 899999999999999887  8899999999999999999854

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=3.6e-07  Score=74.76  Aligned_cols=59  Identities=27%  Similarity=0.302  Sum_probs=51.3

Q ss_pred             CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccc
Q psy6405         155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYD  217 (548)
Q Consensus       155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilD  217 (548)
                      .+++|.+|.++|||+++| |++||+|++|||+++.++.  ++.+++++. +..+.+.+.|...
T Consensus        25 ~Gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~~~~--~~~~~l~~~-~~~v~l~v~R~~~   83 (88)
T d1ky9b2          25 QGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKNIA--ELRKVLDSK-PSVLALNIQRGDS   83 (88)
T ss_dssp             SCCCBCCCCSSCTTGGGT-CCSSCEEEEETTEECSSHH--HHHHHTTTC-CSCCCEEEESSSC
T ss_pred             CeEEEEEECCCCHHHHcC-CCCCcEEEEECCEEcCCHH--HHHHHHHhC-CCEEEEEEEECCE
Confidence            478999999999999999 9999999999999998754  888888765 5678889988754

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.6e-06  Score=71.92  Aligned_cols=59  Identities=20%  Similarity=0.380  Sum_probs=51.7

Q ss_pred             CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEecccc
Q psy6405         155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDL  218 (548)
Q Consensus       155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDL  218 (548)
                      .+++|.+|.++|||+++| |++||.|++|||+++.++.  ++.+.++  .+.++.+.+.|....
T Consensus        31 ~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~V~s~~--dl~~~l~--~g~~v~l~v~R~g~~   89 (100)
T d1lcya1          31 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNAE--DVYEAVR--TQSQLAVQIRRGRET   89 (100)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSHH--HHHHHHT--TCSSEEEEEEETTEE
T ss_pred             CcEEEEEECCCchHhhcC-CCCCcEEEEECCEEcCCHH--HHHHHhc--CCCEEEEEEEECCEE
Confidence            379999999999999999 9999999999999999766  7888875  477899999997653

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.91  E-value=9.1e-06  Score=68.23  Aligned_cols=58  Identities=22%  Similarity=0.295  Sum_probs=50.8

Q ss_pred             CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEecc
Q psy6405         155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALGY  216 (548)
Q Consensus       155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~Ril  216 (548)
                      .+++|..|.++|||++ + |++||+|++|||..+.++.  ++...|+.. ++..+.+.+.|..
T Consensus         3 ~Gv~V~~V~~~sPA~~-~-L~~GD~I~~ing~~v~~~~--~l~~~i~~~~~G~~v~l~v~R~~   61 (103)
T d2hgaa1           3 DGVQIDSVVPGSPASK-V-LTPGLVIESINGMPTSNLT--TYSAALKTISVGEVINITTDQGT   61 (103)
T ss_dssp             CCEEEEEECSSSGGGG-T-SCTTCEEEEETTEECSSHH--HHHHHHTTCCTTCEEEEEETTEE
T ss_pred             CcEEEEEECCCChHHh-c-CCCCCEEEEECCEEcCCHH--HHHHHHhhCCCCCEEEEEEEECC
Confidence            3699999999999986 6 9999999999999999766  888999775 4888999998864

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=1.9e-06  Score=71.07  Aligned_cols=61  Identities=18%  Similarity=0.244  Sum_probs=52.8

Q ss_pred             CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEecccc
Q psy6405         155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALGYDL  218 (548)
Q Consensus       155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~RilDL  218 (548)
                      .+++|..|.++|||+++| |+.||+|++|||.++.++.  ++.+.+... ++..+.+.+.|....
T Consensus        27 ~Gv~V~~V~~~spA~~aG-l~~gDvI~~i~g~~v~~~~--~l~~~l~~~~~g~~v~l~v~R~g~~   88 (94)
T d1ky9a1          27 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFA--ALRAQVGTMPVGSKLTLGLLRDGKQ   88 (94)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSSH--HHHHHTTSSBTTCCCEEEEESSSCE
T ss_pred             CCcEEEECCCChhHHHhC-CCcccEEEEECCEEeCCHH--HHHHHHHhCCCCCEEEEEEEECCEE
Confidence            379999999999999999 9999999999999999987  777888664 477899999887643

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=97.78  E-value=9.9e-06  Score=66.08  Aligned_cols=60  Identities=15%  Similarity=0.079  Sum_probs=51.5

Q ss_pred             CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEecccc
Q psy6405         156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALGYDL  218 (548)
Q Consensus       156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~RilDL  218 (548)
                      ++.|.++.++|+|+++| |++||+|++|||.++.++.  ++.++++.. .+..+.+.+.|....
T Consensus        20 G~~v~~v~~~s~~~~aG-l~~GDiI~~ing~~v~~~~--~~~~~~~~~~~~~~~~l~v~R~g~~   80 (87)
T d2i6va1          20 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEMSLTVERDGQQ   80 (87)
T ss_dssp             EEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTCHH--HHHHHHHTGGGCSEEEEEEEETTEE
T ss_pred             EEEEecCCCCCHHHHCC-CCCCCEEEEECCEEeecHH--HHHHHHHhhccccccEEEEEECCEE
Confidence            57788899999999999 9999999999999999866  777888764 577899999997543

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=2.7e-06  Score=70.81  Aligned_cols=62  Identities=16%  Similarity=0.261  Sum_probs=48.8

Q ss_pred             CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEeccccCC
Q psy6405         156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALGYDLNS  220 (548)
Q Consensus       156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~RilDLr~  220 (548)
                      +++|.+|.++|||+++| |++||.|++|||.++.++.  ++...+... .+..+.+.+.|......
T Consensus        27 Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~v~~~~--~l~~~l~~~~~g~~v~l~v~R~g~~~~   89 (99)
T d1sota1          27 GIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAISAL--ETMDQVAEIRPGSVIPVVVMRDDKQLT   89 (99)
T ss_dssp             CEECCCCCSSSTTTSSS-CCTTCEECBSSSSBCCCSH--HHHHHHHHSCTTCEEEECC-----CCC
T ss_pred             ccEEEEecCCCCHHHcC-CCcceEEEEECCEecccHH--HHHHHHHcCCCCCEEEEEEEECCEEEE
Confidence            68999999999999999 9999999999999999877  677777554 56788888888765443