Psyllid ID: psy6455

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MGLDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSANTGKEIEHYP
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccEEHEHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MGLDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVlpsaqcdfgmtssdkgwlnaapmLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLgicfpylgefqptayREKVLCWLEMFWTGGIIVLPAVAWLliplnlrietpyflySSWNLFVTLVSVPSILLALWLtrfpespkflfecgeYDQALDILRQMFSantgkeiehyp
Flexible Loop (DISEMBL)
MGLDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSantgkeiehyp
Low Complexity Region (SEG)
MGLDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSANTGKEIEHYP
Disordered region (IsUnstruct)
*******QFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFS***********
Disordered Region (DISOPRED)
************FENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFS***********
Disordered Region (DISEMBL)
MGLDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSANTGKEIEHYP
Disordered Region (DISPRO)
*********DATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSANTGK******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSANTGKEIEHYP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	249	2.2.26 [Sep-21-2011]
Q7L1I2	683	Synaptic vesicle glycopro	yes	N/A	0.951	0.346	0.369	1e-34
Q8BG39	683	Synaptic vesicle glycopro	yes	N/A	0.935	0.341	0.367	3e-34
Q63564	683	Synaptic vesicle glycopro	yes	N/A	0.935	0.341	0.362	2e-33
Q69ZS6	727	Synaptic vesicle glycopro	no	N/A	0.935	0.320	0.354	3e-32
Q9Z2I6	727	Synaptic vesicle glycopro	no	N/A	0.935	0.320	0.354	5e-32
Q9JIS5	742	Synaptic vesicle glycopro	no	N/A	0.935	0.314	0.354	6e-32
Q496J9	727	Synaptic vesicle glycopro	no	N/A	0.935	0.320	0.354	6e-32
Q02563	742	Synaptic vesicle glycopro	no	N/A	0.935	0.314	0.354	7e-32
Q4R4X3	742	Synaptic vesicle glycopro	N/A	N/A	0.935	0.314	0.354	8e-32
Q7L0J3	742	Synaptic vesicle glycopro	no	N/A	0.935	0.314	0.354	8e-32

>sp|Q7L1I2|SV2B_HUMAN Synaptic vesicle glycoprotein 2B OS=Homo sapiens GN=SV2B PE=2 SV=1

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/241 (36%), Positives = 127/241 (52%), Gaps = 4/241 (1%)

Query: 3   LDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTS 62
           L+  EQ    +E  +   G+G+F +IL    GL      + + V+SF LPSA+ D  ++S
Sbjct: 85  LEDEEQLAHQYETIMDECGHGRFQWILFFVLGLALMADGVEVFVVSFALPSAEKDMCLSS 144

Query: 63  SDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLAL 122
           S KG L     LGM+ G++  G LAD  GRK  L  +L V+      SS  Q YG FL  
Sbjct: 145 SKKGMLGMIVYLGMMAGAFILGGLADKLGRKRVLSMSLAVNASFASLSSFVQGYGAFLFC 204

Query: 123 RFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL---N 179
           R I+G  + G L I F Y  EF     R + L WL +FW  G +   A+AW +IP     
Sbjct: 205 RLISGIGIGGALPIVFAYFSEFLSREKRGEHLSWLGIFWMTGGLYASAMAWSIIPHYGWG 264

Query: 180 LRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSA 239
             + T Y  + SW +FV + ++P  +  + L   PESP+FL E G++D+A  IL+Q+   
Sbjct: 265 FSMGTNYHFH-SWRVFVIVCALPCTVSMVALKFMPESPRFLLEMGKHDEAWMILKQVHDT 323

Query: 240 N 240
           N
Sbjct: 324 N 324

Probably plays a role in the control of regulated secretion in neural and endocrine cells.
Homo sapiens (taxid: 9606)

>sp|Q8BG39|SV2B_MOUSE Synaptic vesicle glycoprotein 2B OS=Mus musculus GN=Sv2b PE=1 SV=1

 Score =  145 bits (365), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/237 (36%), Positives = 126/237 (53%), Gaps = 4/237 (1%)

Query: 7   EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
           E+    +E  +   G+G+F + L    GL      + I V+SF LPSA+ D  ++SS KG
Sbjct: 89  EELAHQYETIIDECGHGRFQWTLFFVLGLALMADGVEIFVVSFALPSAEKDMCLSSSKKG 148

Query: 67  WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
            L     LGM+ G++  G LAD  GRK  L  +L ++      SS  Q YG FL  R I+
Sbjct: 149 MLGLIVYLGMMAGAFILGGLADKLGRKKVLSMSLAINASFASLSSFVQGYGAFLFCRLIS 208

Query: 127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL---NLRIE 183
           G  + G+L I F Y  EF     R + L WL +FW  G I   A+AW +IP       + 
Sbjct: 209 GIGIGGSLPIVFAYFSEFLSREKRGEHLSWLGIFWMTGGIYASAMAWSIIPHYGWGFSMG 268

Query: 184 TPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
           T Y  + SW +FV + ++P+ +  + L   PESP+FL E G++D+A  IL+Q+   N
Sbjct: 269 TNYHFH-SWRVFVIVCALPATVSMVALKFMPESPRFLLEMGKHDEAWMILKQVHDTN 324

Receptor for the botulinium neurotoxin type A/BOTA.

Mus musculus (taxid: 10090)

>sp|Q63564|SV2B_RAT Synaptic vesicle glycoprotein 2B OS=Rattus norvegicus GN=Sv2b PE=1 SV=1

 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/237 (36%), Positives = 125/237 (52%), Gaps = 4/237 (1%)

Query: 7   EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
           EQ    +E  +   G+G+F + L     L      + + V+SF LPSA+ D  ++SS KG
Sbjct: 89  EQLAHQYETIIDECGHGRFQWTLFFVLVLALMADGVEVFVVSFALPSAEKDMCLSSSKKG 148

Query: 67  WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
            L     LGM+ G++  G LAD  GRK  L  +L ++      SS  Q YG FL  R I+
Sbjct: 149 MLGLIVYLGMMAGAFILGGLADKLGRKKVLSMSLAINASFASLSSFVQGYGAFLFCRLIS 208

Query: 127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL---NLRIE 183
           G  + G+L I F Y  EF     R + L WL +FW  G I   A+AW +IP       + 
Sbjct: 209 GIGIGGSLPIVFAYFSEFLSREKRGEHLSWLGIFWMTGGIYASAMAWSIIPHYGWGFSMG 268

Query: 184 TPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
           T Y  + SW +FV + ++P+ +  + L   PESP+FL E G++D+A  IL+Q+   N
Sbjct: 269 TNYHFH-SWRVFVIVCALPATVSMVALKFMPESPRFLLEMGKHDEAWMILKQVHDTN 324

Receptor for the botulinium neurotoxin type A/BOTA.

Rattus norvegicus (taxid: 10116)

>sp|Q69ZS6|SV2C_MOUSE Synaptic vesicle glycoprotein 2C OS=Mus musculus GN=Sv2c PE=1 SV=2

 Score =  138 bits (348), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 128/237 (54%), Gaps = 4/237 (1%)

Query: 7   EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
           E+    +E  +   G+G+F + L    G+      + + V+ FVLPSA+ D  + +S  G
Sbjct: 132 EELAQQYELIIQECGHGRFQWALFFVLGMALMADGVEVFVVGFVLPSAETDLCIPNSGSG 191

Query: 67  WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
           WL +   LGM+ G++FWG LAD  GRK +L+  + V+G     SS  Q YG FL  R ++
Sbjct: 192 WLGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLVCRLLS 251

Query: 127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL---NLRIE 183
           GF + G +   F Y  E      R + L WL MFW  G I   A+AW +IP    +  + 
Sbjct: 252 GFGIGGAIPTVFSYFAEVLAREKRGEHLSWLCMFWMIGGIYASAMAWAIIPHYGWSFSMG 311

Query: 184 TPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
           + Y  + SW +FV + ++P +   + LT  PESP+FL E G++D+A  IL+ +   N
Sbjct: 312 SAY-QFHSWRVFVIVCALPCVSSVVALTFMPESPRFLLEVGKHDEAWMILKLIHDTN 367

Receptor for the botulinium neurotoxin type A/BOTA.

Mus musculus (taxid: 10090)

>sp|Q9Z2I6|SV2C_RAT Synaptic vesicle glycoprotein 2C OS=Rattus norvegicus GN=Sv2c PE=1 SV=1

 Score =  138 bits (347), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 128/237 (54%), Gaps = 4/237 (1%)

Query: 7   EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
           E+    +E  +   G+G+F + L    G+      + + V+ FVLPSA+ D  + +S  G
Sbjct: 132 EELAQQYELIIQECGHGRFQWALFFVLGMALMADGVEVFVVGFVLPSAETDLCIPNSGSG 191

Query: 67  WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
           WL +   LGM+ G++FWG LAD  GRK +L+  + V+G     SS  Q YG FL  R ++
Sbjct: 192 WLGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLLCRLLS 251

Query: 127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL---NLRIE 183
           GF + G +   F Y  E      R + L WL MFW  G I   A+AW +IP    +  + 
Sbjct: 252 GFGIGGAIPTVFSYFAEVLAREKRGEHLSWLCMFWMIGGIYASAMAWAIIPHYGWSFSMG 311

Query: 184 TPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
           + Y  + SW +FV + ++P +   + LT  PESP+FL E G++D+A  IL+ +   N
Sbjct: 312 SAY-QFHSWRVFVIVCALPCVSSVVALTFMPESPRFLLEVGKHDEAWMILKLIHDTN 367

Receptor for the botulinium neurotoxin type A/BOTA.

Rattus norvegicus (taxid: 10116)

>sp|Q9JIS5|SV2A_MOUSE Synaptic vesicle glycoprotein 2A OS=Mus musculus GN=Sv2a PE=1 SV=1

 Score =  137 bits (345), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 129/237 (54%), Gaps = 4/237 (1%)

Query: 7   EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
           E+    +E  L   G+G+F + L    GL      + + V+ FVLPSA+ D  ++ S+KG
Sbjct: 146 EELAQQYETILRECGHGRFQWTLYFVLGLALMADGVEVFVVGFVLPSAEKDMCLSDSNKG 205

Query: 67  WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
            L     LGM+ G++ WG LAD  GR+  L+ +L V+ +    SS  Q YG FL  R ++
Sbjct: 206 MLGLIVYLGMMVGAFLWGGLADRLGRRQCLLISLSVNSVFAFFSSFVQGYGTFLFCRLLS 265

Query: 127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL---NLRIE 183
           G  + G++ I F Y  EF     R + L WL MFW  G +   A+AW +IP    + ++ 
Sbjct: 266 GVGIGGSIPIVFSYFSEFLAQEKRGEHLSWLCMFWMIGGVYAAAMAWAIIPHYGWSFQMG 325

Query: 184 TPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
           + Y  + SW +FV + + PS+     LT  PESP+F  E G++D+A  +L+Q+   N
Sbjct: 326 SAY-QFHSWRVFVLVCAFPSVFAIGALTTQPESPRFFLENGKHDEAWMVLKQVHDTN 381

Receptor for the botulinium neurotoxin type A/BOTA.

Mus musculus (taxid: 10090)

>sp|Q496J9|SV2C_HUMAN Synaptic vesicle glycoprotein 2C OS=Homo sapiens GN=SV2C PE=2 SV=1

 Score =  137 bits (345), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 128/237 (54%), Gaps = 4/237 (1%)

Query: 7   EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
           E+    +E  +   G+G+F + L    G+      + + V+ FVLPSA+ D  + +S  G
Sbjct: 132 EELAQQYELIIQECGHGRFQWALFFVLGMALMADGVEVFVVGFVLPSAETDLCIPNSGSG 191

Query: 67  WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
           WL +   LGM+ G++FWG LAD  GRK +L+  + V+G     SS  Q YG FL  R ++
Sbjct: 192 WLGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLFCRLLS 251

Query: 127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL---NLRIE 183
           GF + G +   F Y  E      R + L WL MFW  G I   A+AW +IP    +  + 
Sbjct: 252 GFGIGGAIPTVFSYFAEVLAREKRGEHLSWLCMFWMIGGIYASAMAWAIIPHYGWSFSMG 311

Query: 184 TPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
           + Y  + SW +FV + ++P +   + LT  PESP+FL E G++D+A  IL+ +   N
Sbjct: 312 SAY-QFHSWRVFVIVCALPCVSSVVALTFMPESPRFLLEVGKHDEAWMILKLIHDTN 367

Plays a role in the control of regulated secretion in neural and endocrine cells, enhancing selectively low-frequency neurotransmission. Positively regulates vesicle fusion by maintaining the readily releasable pool of secretory vesicles.

Homo sapiens (taxid: 9606)

>sp|Q02563|SV2A_RAT Synaptic vesicle glycoprotein 2A OS=Rattus norvegicus GN=Sv2a PE=1 SV=2

 Score =  137 bits (345), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 129/237 (54%), Gaps = 4/237 (1%)

Query: 7   EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
           E+    +E  L   G+G+F + L    GL      + + V+ FVLPSA+ D  ++ S+KG
Sbjct: 146 EELAQQYETILRECGHGRFQWTLYFVLGLALMADGVEVFVVGFVLPSAEKDMCLSDSNKG 205

Query: 67  WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
            L     LGM+ G++ WG LAD  GR+  L+ +L V+ +    SS  Q YG FL  R ++
Sbjct: 206 MLGLIVYLGMMVGAFLWGGLADRLGRRQCLLISLSVNSVFAFFSSFVQGYGTFLFCRLLS 265

Query: 127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL---NLRIE 183
           G  + G++ I F Y  EF     R + L WL MFW  G +   A+AW +IP    + ++ 
Sbjct: 266 GVGIGGSIPIVFSYFSEFLAQEKRGEHLSWLCMFWMIGGVYAAAMAWAIIPHYGWSFQMG 325

Query: 184 TPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
           + Y  + SW +FV + + PS+     LT  PESP+F  E G++D+A  +L+Q+   N
Sbjct: 326 SAY-QFHSWRVFVLVCAFPSVFAIGALTTQPESPRFFLENGKHDEAWMVLKQVHDTN 381

Receptor for the botulinium neurotoxin type A/BOTA.

Rattus norvegicus (taxid: 10116)

>sp|Q4R4X3|SV2A_MACFA Synaptic vesicle glycoprotein 2A OS=Macaca fascicularis GN=SV2A PE=2 SV=1

 Score =  137 bits (344), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 129/237 (54%), Gaps = 4/237 (1%)

Query: 7   EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
           E+    +E  L   G+G+F + L    GL      + + V+ FVLPSA+ D  ++ S+KG
Sbjct: 146 EELAQQYEAILRECGHGRFQWTLYFVLGLALMADGVEVFVVGFVLPSAEKDMCLSDSNKG 205

Query: 67  WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
            L     LGM+ G++ WG LAD  GR+  L+ +L V+ +    SS  Q YG FL  R ++
Sbjct: 206 MLGLIVYLGMMVGAFLWGGLADRLGRRQCLLISLSVNSVFAFFSSFVQGYGTFLFCRLLS 265

Query: 127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL---NLRIE 183
           G  + G++ I F Y  EF     R + L WL MFW  G +   A+AW +IP    + ++ 
Sbjct: 266 GVGIGGSIPIVFSYFSEFLAQEKRGEHLSWLCMFWMIGGVYAAAMAWAIIPHYGWSFQMG 325

Query: 184 TPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
           + Y  + SW +FV + + PS+     LT  PESP+F  E G++D+A  +L+Q+   N
Sbjct: 326 SAY-QFHSWRVFVLVCAFPSVFAIGALTTQPESPRFFLENGKHDEAWMVLKQVHDTN 381

Plays a role in the control of regulated secretion in neural and endocrine cells, enhancing selectively low-frequency neurotransmission. Positively regulates vesicle fusion by maintaining the readily releasable pool of secretory vesicles.

Macaca fascicularis (taxid: 9541)

>sp|Q7L0J3|SV2A_HUMAN Synaptic vesicle glycoprotein 2A OS=Homo sapiens GN=SV2A PE=1 SV=1

 Score =  137 bits (344), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 129/237 (54%), Gaps = 4/237 (1%)

Query: 7   EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
           E+    +E  L   G+G+F + L    GL      + + V+ FVLPSA+ D  ++ S+KG
Sbjct: 146 EELAQQYEAILRECGHGRFQWTLYFVLGLALMADGVEVFVVGFVLPSAEKDMCLSDSNKG 205

Query: 67  WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
            L     LGM+ G++ WG LAD  GR+  L+ +L V+ +    SS  Q YG FL  R ++
Sbjct: 206 MLGLIVYLGMMVGAFLWGGLADRLGRRQCLLISLSVNSVFAFFSSFVQGYGTFLFCRLLS 265

Query: 127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL---NLRIE 183
           G  + G++ I F Y  EF     R + L WL MFW  G +   A+AW +IP    + ++ 
Sbjct: 266 GVGIGGSIPIVFSYFSEFLAQEKRGEHLSWLCMFWMIGGVYAAAMAWAIIPHYGWSFQMG 325

Query: 184 TPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
           + Y  + SW +FV + + PS+     LT  PESP+F  E G++D+A  +L+Q+   N
Sbjct: 326 SAY-QFHSWRVFVLVCAFPSVFAIGALTTQPESPRFFLENGKHDEAWMVLKQVHDTN 381

Plays a role in the control of regulated secretion in neural and endocrine cells, enhancing selectively low-frequency neurotransmission. Positively regulates vesicle fusion by maintaining the readily releasable pool of secretory vesicles.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
270001549	521	hypothetical protein TcasGA2_TC000393 [T	1.0	0.477	0.602	5e-89
189234743	512	PREDICTED: similar to synaptic vesicle p	1.0	0.486	0.602	7e-89
340717508	510	PREDICTED: synaptic vesicle glycoprotein	1.0	0.488	0.618	9e-89
350407545	510	PREDICTED: synaptic vesicle glycoprotein	1.0	0.488	0.618	1e-88
380023130	509	PREDICTED: synaptic vesicle glycoprotein	1.0	0.489	0.606	5e-88
345486887	513	PREDICTED: synaptic vesicle glycoprotein	1.0	0.485	0.610	1e-87
328777882	355	PREDICTED: synaptic vesicle glycoprotein	1.0	0.701	0.602	2e-87
357611405	543	hypothetical protein KGM_03534 [Danaus p	0.995	0.456	0.608	4e-87
307214457	557	Synaptic vesicle glycoprotein 2B [Harpeg	0.995	0.445	0.608	7e-87
322785457	511	hypothetical protein SINV_09686 [Solenop	0.995	0.485	0.606	7e-86

>gi|270001549|gb|EEZ97996.1| hypothetical protein TcasGA2_TC000393 [Tribolium castaneum]

 Score =  333 bits (853), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 150/249 (60%), Positives = 193/249 (77%)

Query: 1   MGLDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGM 60
           MGLDF E     FE AL + G+GKFH+ L+   GL+Y   A+ IT++SFVLPSA CDF M
Sbjct: 1   MGLDFIEGQGEDFERALESTGFGKFHFALLTICGLIYLNTAVGITIISFVLPSATCDFEM 60

Query: 61  TSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFL 120
           +SSDKGWL AAPMLGMV GSYFWGCLADT+GRK  LIGALL+DG CG+ SS++Q Y +F+
Sbjct: 61  SSSDKGWLTAAPMLGMVIGSYFWGCLADTKGRKTVLIGALLMDGCCGLLSSISQVYWLFM 120

Query: 121 ALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNL 180
             RF+NGFA+TG +GICFPYLGEFQP  YRE +LCW+E+FWT G+IVLP +AW++IP+  
Sbjct: 121 LFRFLNGFAITGAMGICFPYLGEFQPGKYRETILCWMELFWTLGVIVLPGIAWIIIPMEF 180

Query: 181 RIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
             +T  F ++SWNLFV   S+PS+ + LWL  FPESPKFL ECGE ++AL++L+ M+++N
Sbjct: 181 VYQTDNFKFASWNLFVATCSIPSLFIGLWLFFFPESPKFLLECGEAEEALEVLKDMYASN 240

Query: 241 TGKEIEHYP 249
           TG    ++P
Sbjct: 241 TGDSAANFP 249

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234743|ref|XP_974142.2| PREDICTED: similar to synaptic vesicle protein [Tribolium castaneum]

 Score =  332 bits (852), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 150/249 (60%), Positives = 193/249 (77%)

Query: 1   MGLDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGM 60
           MGLDF E     FE AL + G+GKFH+ L+   GL+Y   A+ IT++SFVLPSA CDF M
Sbjct: 1   MGLDFIEGQGEDFERALESTGFGKFHFALLTICGLIYLNTAVGITIISFVLPSATCDFEM 60

Query: 61  TSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFL 120
           +SSDKGWL AAPMLGMV GSYFWGCLADT+GRK  LIGALL+DG CG+ SS++Q Y +F+
Sbjct: 61  SSSDKGWLTAAPMLGMVIGSYFWGCLADTKGRKTVLIGALLMDGCCGLLSSISQVYWLFM 120

Query: 121 ALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNL 180
             RF+NGFA+TG +GICFPYLGEFQP  YRE +LCW+E+FWT G+IVLP +AW++IP+  
Sbjct: 121 LFRFLNGFAITGAMGICFPYLGEFQPGKYRETILCWMELFWTLGVIVLPGIAWIIIPMEF 180

Query: 181 RIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
             +T  F ++SWNLFV   S+PS+ + LWL  FPESPKFL ECGE ++AL++L+ M+++N
Sbjct: 181 VYQTDNFKFASWNLFVATCSIPSLFIGLWLFFFPESPKFLLECGEAEEALEVLKDMYASN 240

Query: 241 TGKEIEHYP 249
           TG    ++P
Sbjct: 241 TGDSAANFP 249

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717508|ref|XP_003397223.1| PREDICTED: synaptic vesicle glycoprotein 2B-like [Bombus terrestris]

 Score =  332 bits (851), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 154/249 (61%), Positives = 189/249 (75%)

Query: 1   MGLDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGM 60
           MGLDF     A FE+A+   G+GKFHY+L+   GL+Y   AI +T+LSFVLP+AQCD  M
Sbjct: 1   MGLDFLADGGADFEHAITVTGFGKFHYMLLAICGLIYMDTAIGVTILSFVLPAAQCDLEM 60

Query: 61  TSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFL 120
            S+ KGWL A+PMLGMV GSY WGCLADT+GRK+ LI  LL+DG+ GIASS  QY+ VFL
Sbjct: 61  DSTAKGWLTASPMLGMVIGSYIWGCLADTKGRKVVLIATLLMDGIVGIASSFVQYFWVFL 120

Query: 121 ALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNL 180
             RF NGFAVTG +GICFPYLGEFQ T YREK LCW+EMFWT G+IVLP +AWL+IP+N 
Sbjct: 121 IFRFFNGFAVTGAMGICFPYLGEFQATKYREKCLCWMEMFWTVGVIVLPLIAWLIIPMNF 180

Query: 181 RIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
              +  F + SWNLFV L ++PSI+L LWL  FPESPKFL ECGE + AL++ + ++S N
Sbjct: 181 MYVSDMFYFKSWNLFVALCALPSIMLGLWLFAFPESPKFLLECGETEAALEVFKWIYSQN 240

Query: 241 TGKEIEHYP 249
           TGK+ + YP
Sbjct: 241 TGKDADSYP 249

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407545|ref|XP_003488120.1| PREDICTED: synaptic vesicle glycoprotein 2B-like [Bombus impatiens]

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 154/249 (61%), Positives = 189/249 (75%)

Query: 1   MGLDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGM 60
           MGLDF     A FE+A+   G+GKFHY+L+   GL+Y   AI +T+LSFVLP+AQCD  M
Sbjct: 1   MGLDFLADGGADFEHAITVTGFGKFHYMLLAVCGLIYMDTAIGVTILSFVLPAAQCDLEM 60

Query: 61  TSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFL 120
            S+ KGWL A+PMLGMV GSY WGCLADT+GRK+ LI  LL+DG+ GIASS  QY+ VFL
Sbjct: 61  DSTAKGWLTASPMLGMVIGSYIWGCLADTKGRKVVLIATLLMDGIVGIASSFVQYFWVFL 120

Query: 121 ALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNL 180
             RF NGFAVTG +GICFPYLGEFQ T YREK LCW+EMFWT G+IVLP +AWL+IP+N 
Sbjct: 121 IFRFFNGFAVTGAMGICFPYLGEFQATKYREKCLCWMEMFWTVGVIVLPLIAWLIIPMNF 180

Query: 181 RIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
              +  F + SWNLFV L ++PSI+L LWL  FPESPKFL ECGE + AL++ + ++S N
Sbjct: 181 MYVSDMFYFKSWNLFVALCALPSIMLGLWLFAFPESPKFLLECGETEAALEVFKWIYSQN 240

Query: 241 TGKEIEHYP 249
           TGK+ + YP
Sbjct: 241 TGKDADSYP 249

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023130|ref|XP_003695380.1| PREDICTED: synaptic vesicle glycoprotein 2B-like [Apis florea]

 Score =  329 bits (844), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 151/249 (60%), Positives = 188/249 (75%)

Query: 1   MGLDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGM 60
           MGLDF     A FE+A+   G+GKFHY+L+   GL+Y   AI +T+LSFVLP+AQCD  M
Sbjct: 1   MGLDFLADGGADFEHAITVTGFGKFHYMLLTICGLIYMDTAIGVTILSFVLPAAQCDLEM 60

Query: 61  TSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFL 120
            S+ KGWL A+PMLGMV GSY WGCLAD +GRKI LI  LL+DG+ G+ SS  QY+ +FL
Sbjct: 61  DSTAKGWLTASPMLGMVVGSYIWGCLADIKGRKIVLIATLLMDGIVGVVSSFVQYFWIFL 120

Query: 121 ALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNL 180
             RF NGFAVTG +GICFPYLGEFQPT YREK LCW+EMFWT G+I+LP +AWL+IP+N 
Sbjct: 121 VFRFFNGFAVTGAMGICFPYLGEFQPTKYREKCLCWMEMFWTVGVILLPLIAWLIIPMNF 180

Query: 181 RIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
              T  F + SWNLFV L ++PS++L LWL  FPESPKFL ECGE D AL++ + ++S N
Sbjct: 181 MYLTDTFYFKSWNLFVALCALPSLMLGLWLFAFPESPKFLLECGETDAALEVFKWIYSQN 240

Query: 241 TGKEIEHYP 249
           TG++ + YP
Sbjct: 241 TGEDPDSYP 249

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345486887|ref|XP_001607777.2| PREDICTED: synaptic vesicle glycoprotein 2B-like [Nasonia vitripennis]

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 152/249 (61%), Positives = 189/249 (75%)

Query: 1   MGLDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGM 60
           MGLDF     A FE+A+   G+GKFHY+L+   GL+Y   AI +T+LSFVLP+AQCD  M
Sbjct: 1   MGLDFLADGGADFEHAITVTGFGKFHYMLLAISGLIYMDTAIGVTILSFVLPAAQCDLEM 60

Query: 61  TSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFL 120
            S+ KGWL AAPMLGMV GSY WGCLADT+GRKI LI  LL+DG+ GI SS  QY+ VFL
Sbjct: 61  DSTSKGWLTAAPMLGMVIGSYIWGCLADTKGRKIVLIATLLMDGIVGILSSFVQYFWVFL 120

Query: 121 ALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNL 180
             RF NGFAVTG +GI FPYLGEFQPT  REK+LCW+EMFWT G+IVLP +AWL++PL+L
Sbjct: 121 VFRFFNGFAVTGAMGIVFPYLGEFQPTKQREKILCWMEMFWTVGVIVLPLIAWLIVPLDL 180

Query: 181 RIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
             +T  F + SWNLFV L ++PS++L LWL  FPESPKFL ECGE + AL++ + +++ N
Sbjct: 181 SYQTSGFDFKSWNLFVALCALPSLMLGLWLFAFPESPKFLLECGETEAALEVFKYIYAQN 240

Query: 241 TGKEIEHYP 249
           TG + + YP
Sbjct: 241 TGNDPDSYP 249

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777882|ref|XP_001122587.2| PREDICTED: synaptic vesicle glycoprotein 2C-like [Apis mellifera]

 Score =  328 bits (840), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 150/249 (60%), Positives = 188/249 (75%)

Query: 1   MGLDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGM 60
           MGLDF     A FE+A+   G+GKFHY+L+   GL+Y   AI +T+LSFVLP+AQCD  M
Sbjct: 1   MGLDFLADGGADFEHAITVTGFGKFHYMLLTICGLIYMDTAIGVTILSFVLPAAQCDLEM 60

Query: 61  TSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFL 120
            S+ KGWL A+PMLGMV GSY WGCLAD +GRK+ LI  LL+DG+ G+ SS  QY+ +FL
Sbjct: 61  DSTAKGWLTASPMLGMVVGSYIWGCLADIKGRKVVLIATLLMDGIVGVVSSFVQYFWIFL 120

Query: 121 ALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNL 180
             RF NGFAVTG +GICFPYLGEFQPT YREK LCW+EMFWT G+I+LP +AWL+IP+N 
Sbjct: 121 VFRFFNGFAVTGAMGICFPYLGEFQPTKYREKCLCWMEMFWTVGVILLPLIAWLIIPMNF 180

Query: 181 RIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
              T  F + SWNLFV L ++PS++L LWL  FPESPKFL ECGE D AL++ + ++S N
Sbjct: 181 MYLTDTFYFKSWNLFVALCALPSLMLGLWLFAFPESPKFLLECGETDAALEVFKWIYSQN 240

Query: 241 TGKEIEHYP 249
           TG++ + YP
Sbjct: 241 TGEDPDSYP 249

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357611405|gb|EHJ67462.1| hypothetical protein KGM_03534 [Danaus plexippus]

 Score =  326 bits (836), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 152/250 (60%), Positives = 190/250 (76%), Gaps = 2/250 (0%)

Query: 1   MGLDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGM 60
           MGLDF E   A FE A++A G+G+FH+ L+   GL+YA  AI IT++SFVLP+A CDF M
Sbjct: 25  MGLDFLEH-GADFEAAISATGFGRFHFCLLAVTGLIYANTAIGITIISFVLPAATCDFKM 83

Query: 61  TSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFL 120
           TS+DKGWL AAPMLGMV GSYFWGCLADT+GRK+ L+  LL+DG  GI SS  Q   +F+
Sbjct: 84  TSADKGWLTAAPMLGMVIGSYFWGCLADTKGRKVVLVSTLLIDGFVGILSSFVQILPIFM 143

Query: 121 ALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLN- 179
           A RFINGF+V G +GICFPYLGEFQ T YREK+LCW+EMFWT G+IVLP +AW +IP+  
Sbjct: 144 ACRFINGFSVAGAMGICFPYLGEFQQTKYREKILCWMEMFWTLGVIVLPLIAWGIIPIQG 203

Query: 180 LRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSA 239
           +RIE+  F Y SWN FV    +PS+LL  WL  FPESPKF+ ECG+YD AL  L++++  
Sbjct: 204 IRIESGSFSYDSWNWFVAACGIPSLLLGFWLFTFPESPKFMMECGDYDDALACLKKIYKQ 263

Query: 240 NTGKEIEHYP 249
           NTG + ++YP
Sbjct: 264 NTGDDPDNYP 273

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214457|gb|EFN89494.1| Synaptic vesicle glycoprotein 2B [Harpegnathos saltator]

 Score =  326 bits (835), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 151/248 (60%), Positives = 188/248 (75%)

Query: 2   GLDFGEQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMT 61
           GLDF     A FE+A+   G+GKFHY+L++  GL+Y   AI +T+LSFVLP+AQCD  M 
Sbjct: 50  GLDFLADGGADFEHAITVTGFGKFHYMLLMICGLIYMDTAIGVTILSFVLPAAQCDLEMD 109

Query: 62  SSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLA 121
           SS KGWL A+PMLGM+ GSY WGCLADT+GRKI LI  LL+DG+ GI SS  QY+ VFL 
Sbjct: 110 SSAKGWLTASPMLGMLIGSYIWGCLADTKGRKIVLIATLLMDGIVGILSSFVQYFWVFLL 169

Query: 122 LRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLR 181
            RF NGFAVTG +GICFPYLGEFQPT YRE+ LCW+EMFWT G+IVLP +AWL+IPLN  
Sbjct: 170 FRFFNGFAVTGAMGICFPYLGEFQPTKYRERCLCWMEMFWTVGVIVLPLIAWLIIPLNFT 229

Query: 182 IETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSANT 241
             +  F + +WNLFV L ++PS++L LWL  FPESPKFL ECGE + AL++ + ++S NT
Sbjct: 230 YVSNMFYFKTWNLFVALCALPSLMLGLWLFAFPESPKFLLECGETEAALEVFKWIYSQNT 289

Query: 242 GKEIEHYP 249
           G + + YP
Sbjct: 290 GADPDTYP 297

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785457|gb|EFZ12128.1| hypothetical protein SINV_09686 [Solenopsis invicta]

 Score =  322 bits (826), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 151/249 (60%), Positives = 189/249 (75%), Gaps = 1/249 (0%)

Query: 2   GLDFGEQFDATFENALAAAG-YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGM 60
           GLDF     A FE+A+   G +G+FHY+L+   GL+Y   AI +T+LSFVLP+AQCD  M
Sbjct: 1   GLDFLADGGADFEHAITITGSFGRFHYMLLTICGLIYMDTAIGVTILSFVLPAAQCDLEM 60

Query: 61  TSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFL 120
            S+ KGWL A+PMLGM+ GSY WGCLADT+GRKI LI  LL+DG+ GIASS  QY+ VFL
Sbjct: 61  DSTAKGWLTASPMLGMLIGSYIWGCLADTKGRKIVLITTLLMDGIVGIASSFVQYFWVFL 120

Query: 121 ALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNL 180
             RF NGFA+TG +GICFPYLGEFQPT +RE+ LCW+EMFWT G+IVLP +AWL+IP++ 
Sbjct: 121 IFRFFNGFAITGAMGICFPYLGEFQPTKFRERCLCWMEMFWTVGVIVLPLIAWLIIPMDF 180

Query: 181 RIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
            I +  F + SWNLFV L ++PSI+L LWL  FPESPKFL ECGE D AL++ + ++S N
Sbjct: 181 TIVSETFYFKSWNLFVALCALPSIMLGLWLFAFPESPKFLLECGETDAALEVFKWIYSRN 240

Query: 241 TGKEIEHYP 249
           TG + E YP
Sbjct: 241 TGADPETYP 249

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
FB|FBgn0029896	632	CG3168 [Drosophila melanogaste	0.955	0.376	0.428	1.3e-52
ZFIN|ZDB-GENE-000607-80	541	id:ibd5037 "id:ibd5037" [Danio	0.955	0.439	0.395	1.7e-43
FB|FBgn0051272	563	CG31272 [Drosophila melanogast	0.975	0.431	0.333	6.3e-37
UNIPROTKB|F1PQU5	724	SV2C "Uncharacterized protein"	0.935	0.321	0.354	7.4e-36
UNIPROTKB|F1P2X3	635	SV2B "Uncharacterized protein"	0.935	0.366	0.388	1.1e-35
MGI|MGI:1922459	727	Sv2c "synaptic vesicle glycopr	0.935	0.320	0.354	1.6e-35
ZFIN|ZDB-GENE-060526-233	745	sv2c "synaptic vesicle glycopr	0.751	0.251	0.357	1.8e-35
UNIPROTKB|E1BVI1	705	SV2B "Uncharacterized protein"	0.935	0.330	0.388	1.8e-35
UNIPROTKB|B3KT41	676	SV2C "cDNA FLJ37598 fis, clone	0.935	0.344	0.354	2e-35
RGD|619718	727	Sv2c "synaptic vesicle glycopr	0.935	0.320	0.354	2.1e-35

FB|FBgn0029896 CG3168 [Drosophila melanogaster (taxid:7227)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 102/238 (42%), Positives = 148/238 (62%)

Query:    11 ATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNA 70
             A FE A+   GYGKFHYIL+   GL+     + +  +SF+LPSA+CD  + +  KGWLN+
Sbjct:   135 ANFERAIELCGYGKFHYILLAICGLVSTSEEMDVISMSFILPSAECDLDLNTETKGWLNS 194

Query:    71 APMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAV 130
                +GM+ G+YFWG +AD+ GRK  LI    ++  C +ASS +Q Y  F+  RF+NG A+
Sbjct:   195 IIFIGMMVGAYFWGSIADSFGRKKVLIVISFMNAFCIVASSFSQTYSFFMLFRFLNGAAL 254

Query:   131 TGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYS 190
              G+  + + Y  EFQP A R  +L ++  FWT G + + ++AWL+IP  +   TPYF Y+
Sbjct:   255 GGSGPVIWSYFAEFQPKAKRGSMLSFMAAFWTFGNLFVASLAWLIIPRTIGFTTPYFTYN 314

Query:   191 SWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSANTGKEIEHY 248
             SW +F+ + S+PS L+   L   PESPKFL   G+ D+AL I R +F  NT +  + Y
Sbjct:   315 SWRIFLLVCSLPSFLVGFLLFYLPESPKFLLTRGKKDRALAIFRGIFVTNTKRRPDEY 372

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-000607-80 id:ibd5037 "id:ibd5037" [Danio rerio (taxid:7955)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 95/240 (39%), Positives = 143/240 (59%)

Query:    12 TFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAA 71
             T+E A+  AG+G FH++L++  G   A  A+ I  +SF+LP+A+CD  ++S+D G L A+
Sbjct:    51 TYEEAVEKAGFGLFHWLLLVVCGWANASDAVEILCVSFLLPTARCDLQLSSADMGILTAS 110

Query:    72 PMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVT 131
               LGM+ G   WG LAD +GR+  L+ +L V+G  G  +S+A  + +FL LRF +G  V 
Sbjct:   111 IFLGMMVGGCVWGFLADRRGRRSVLVVSLAVNGTFGAVASLAPAFWLFLLLRFFSGVGVG 170

Query:   132 GTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP-LNLRIETPYFLYS 190
             G++ + F Y  EFQP   R  ++  L  FW  G I+   VAWL+IP  +L  +  +  + 
Sbjct:   171 GSIPVIFSYFSEFQPCLRRGAMISALATFWMAGNILAAGVAWLVIPRTSLNADWGWLDFQ 230

Query:   191 SWNLFVTLVSVPSILLALWLTRF-PESPKFLFECGEYDQALDILRQMFSANTGKEIEHYP 249
             SW LFV L S+PS+  AL    F PESPKFL E G   +AL + ++++  N     + +P
Sbjct:   231 SWRLFVVLCSIPSLSSALIFRLFMPESPKFLMEAGREMEALTVFQKIYKLNNRGATKPFP 290

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

FB|FBgn0051272 CG31272 [Drosophila melanogaster (taxid:7227)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 81/243 (33%), Positives = 129/243 (53%)

Query:     7 EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
             E+  ATF+ A+  AG+G F+ +L+I      + A    + +S++LP A+CD  +T  DKG
Sbjct:    39 EEGSATFDKAIEGAGFGIFNLMLLIVSIPAQSAAIFESSSMSYILPIAECDLRLTLEDKG 98

Query:    67 WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
              LNA    GM   +  WG LADT+GRK  L    L+D +C   S+++Q + + +  +F+ 
Sbjct:    99 VLNAVAYAGMTISAIAWGYLADTKGRKKILYWGYLIDAVCVFGSALSQNFSMLVMFKFLG 158

Query:   127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPY 186
             G  V G   + F YL E     +R  VL  + M  +   + LP +AW + P +   E   
Sbjct:   159 GLVVNGPAAVLFTYLTEMHGPKHRSSVLMIVGMVTSTATVSLPLLAWGIFPRDWDFEFWG 218

Query:   187 FLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSANTGKEIE 246
                 SW +F+ ++ +PS++  L     PESP+FL   G  ++AL   +Q++  NT K  +
Sbjct:   219 LQVHSWQIFLFVLGIPSLISGLIFCSMPESPRFLMAQGRNEEALQAFKQIYHVNTRKPKD 278

Query:   247 HYP 249
              YP
Sbjct:   279 SYP 281

GO:0030672 "synaptic vesicle membrane" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016298 "lipase activity" evidence=ISS

GO:0006629 "lipid metabolic process" evidence=ISS

UNIPROTKB|F1PQU5 SV2C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 394 (143.8 bits), Expect = 7.4e-36, P = 7.4e-36
 Identities = 84/237 (35%), Positives = 129/237 (54%)

Query:     7 EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
             E+    +E  +   G+G+F + L    G+      + + V+ FVLPSA+ D  + +S  G
Sbjct:   131 EELAQQYELIIQECGHGRFQWALFFVLGMALMADGVEVFVVGFVLPSAETDLCIPNSGSG 190

Query:    67 WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
             WL +   LGM+ G++FWG LAD  GRK +L+  + ++G     SS  Q YG FL  R ++
Sbjct:   191 WLGSIVYLGMMAGAFFWGGLADKIGRKQSLLICMSINGFFAFLSSFVQGYGFFLFCRLLS 250

Query:   127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP---LNLRIE 183
             GF + G +   FPY  E      R + L WL MFW  G I   A+AW +IP    +  + 
Sbjct:   251 GFGIGGAIPTVFPYFAEVLAREKRGEHLSWLCMFWMIGGIYASAMAWAIIPHYGWSFSMG 310

Query:   184 TPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
             + Y  + SW +FV + ++P +   + LT  PESP+FL E G++D+A  IL+ +   N
Sbjct:   311 SAY-QFHSWRVFVIVCALPCVSSVVALTFMPESPRFLLEVGKHDEAWMILKLIHDTN 366

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1P2X3 SV2B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 390 (142.3 bits), Expect = 1.1e-35, P = 1.1e-35
 Identities = 92/237 (38%), Positives = 127/237 (53%)

Query:     7 EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
             EQ    +EN +   G+G+F + L    GL      + + V+ FVLPSA+ D  ++SS+KG
Sbjct:    42 EQLAHQYENIIEECGHGRFQWTLFFVLGLALMADGVELFVVGFVLPSAEKDMCLSSSNKG 101

Query:    67 WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
              L     LGM+ G+   G LAD  GRK  LI +L ++      SS  Q YG FL  R I+
Sbjct:   102 MLGLIVYLGMMVGAVMLGGLADKLGRKKCLIISLAINAAFAFLSSFVQGYGFFLFCRLIS 161

Query:   127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP---LNLRIE 183
             G  + G+L I F Y  EF     R + L WL MFW  G I   A+AW +IP       + 
Sbjct:   162 GLGIGGSLPIVFAYFSEFLSREKRGEHLSWLCMFWMIGGIFASAMAWSIIPHYGWGFSMG 221

Query:   184 TPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
             T Y  +S W +FV + S+P I   + L   PESP+FL E G++D+A  IL+Q+   N
Sbjct:   222 TKYHFHS-WRVFVLVCSLPCIASLVALKFMPESPRFLLEMGKHDEAWMILKQVHDTN 277

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1922459 Sv2c "synaptic vesicle glycoprotein 2c" [Mus musculus (taxid:10090)]

 Score = 391 (142.7 bits), Expect = 1.6e-35, P = 1.6e-35
 Identities = 84/237 (35%), Positives = 128/237 (54%)

Query:     7 EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
             E+    +E  +   G+G+F + L    G+      + + V+ FVLPSA+ D  + +S  G
Sbjct:   132 EELAQQYELIIQECGHGRFQWALFFVLGMALMADGVEVFVVGFVLPSAETDLCIPNSGSG 191

Query:    67 WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
             WL +   LGM+ G++FWG LAD  GRK +L+  + V+G     SS  Q YG FL  R ++
Sbjct:   192 WLGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLVCRLLS 251

Query:   127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP---LNLRIE 183
             GF + G +   F Y  E      R + L WL MFW  G I   A+AW +IP    +  + 
Sbjct:   252 GFGIGGAIPTVFSYFAEVLAREKRGEHLSWLCMFWMIGGIYASAMAWAIIPHYGWSFSMG 311

Query:   184 TPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
             + Y  + SW +FV + ++P +   + LT  PESP+FL E G++D+A  IL+ +   N
Sbjct:   312 SAY-QFHSWRVFVIVCALPCVSSVVALTFMPESPRFLLEVGKHDEAWMILKLIHDTN 367

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0007268 "synaptic transmission" evidence=TAS

GO:0008021 "synaptic vesicle" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-060526-233 sv2c "synaptic vesicle glycoprotein 2C" [Danio rerio (taxid:7955)]

 Score = 305 (112.4 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
 Identities = 69/193 (35%), Positives = 99/193 (51%)

Query:     7 EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
             E+    +E  +   G+G+F + L    GL      + + V+ FVLPSA+ D  +  S  G
Sbjct:   134 EELAQQYELIIQECGHGRFQWQLFFTLGLALMSDGVEVFVVGFVLPSAETDMCVPDSSSG 193

Query:    67 WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
             WL +   LGM+ G++FWG +AD  GR+  L+  + ++G     SS  Q YG+FL  R I 
Sbjct:   194 WLGSIVYLGMMVGAFFWGGMADKVGRRQCLLICMSLNGFFAFLSSFVQGYGLFLLCRMIA 253

Query:   127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETP- 185
             GF + G + I F Y  E      R + L WL MFW  G I   A+AW +IP   +I T  
Sbjct:   254 GFGIGGAVPIVFSYFAEVLAREKRGEHLSWLCMFWMIGEIYASAMAWAIIPHYGQITTAS 313

Query:   186 -----YFLYSSWN 193
                  Y  Y+SW+
Sbjct:   314 SQFINYHHYTSWS 326

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BVI1 SV2B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 390 (142.3 bits), Expect = 1.8e-35, P = 1.8e-35
 Identities = 92/237 (38%), Positives = 127/237 (53%)

Query:     7 EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
             EQ    +EN +   G+G+F + L    GL      + + V+ FVLPSA+ D  ++SS+KG
Sbjct:   111 EQLAHQYENIIEECGHGRFQWTLFFVLGLALMADGVELFVVGFVLPSAEKDMCLSSSNKG 170

Query:    67 WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
              L     LGM+ G+   G LAD  GRK  LI +L ++      SS  Q YG FL  R I+
Sbjct:   171 MLGLIVYLGMMVGAVMLGGLADKLGRKKCLIISLAINAAFAFLSSFVQGYGFFLFCRLIS 230

Query:   127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP---LNLRIE 183
             G  + G+L I F Y  EF     R + L WL MFW  G I   A+AW +IP       + 
Sbjct:   231 GLGIGGSLPIVFAYFSEFLSREKRGEHLSWLCMFWMIGGIFASAMAWSIIPHYGWGFSMG 290

Query:   184 TPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
             T Y  +S W +FV + S+P I   + L   PESP+FL E G++D+A  IL+Q+   N
Sbjct:   291 TKYHFHS-WRVFVLVCSLPCIASLVALKFMPESPRFLLEMGKHDEAWMILKQVHDTN 346

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

UNIPROTKB|B3KT41 SV2C "cDNA FLJ37598 fis, clone BRCOC2008642, highly similar to Synaptic vesicle glycoprotein 2C" [Homo sapiens (taxid:9606)]

 Score = 389 (142.0 bits), Expect = 2.0e-35, P = 2.0e-35
 Identities = 84/237 (35%), Positives = 128/237 (54%)

Query:     7 EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
             E+    +E  +   G+G+F + L    G+      + + V+ FVLPSA+ D  + +S  G
Sbjct:   132 EELAQQYELIIQECGHGRFQWALFFVLGMALMADGVEVFVVGFVLPSAETDLCIPNSGSG 191

Query:    67 WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
             WL +   LGM+ G++FWG LAD  GRK +L+  + V+G     SS  Q YG FL  R ++
Sbjct:   192 WLGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLFCRLLS 251

Query:   127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP---LNLRIE 183
             GF + G +   F Y  E      R + L WL MFW  G I   A+AW +IP    +  + 
Sbjct:   252 GFGIGGAIPTVFSYFAEVLAREKRGEHLSWLCMFWMIGGIYASAMAWAIIPHYGWSFSMG 311

Query:   184 TPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
             + Y  + SW +FV + ++P +   + LT  PESP+FL E G++D+A  IL+ +   N
Sbjct:   312 SAY-QFHSWRVFVIVCALPCVSSVVALTFMPESPRFLLEVGKHDEAWMILKLIHDTN 367

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|619718 Sv2c "synaptic vesicle glycoprotein 2c" [Rattus norvegicus (taxid:10116)]

 Score = 390 (142.3 bits), Expect = 2.1e-35, P = 2.1e-35
 Identities = 84/237 (35%), Positives = 128/237 (54%)

Query:     7 EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
             E+    +E  +   G+G+F + L    G+      + + V+ FVLPSA+ D  + +S  G
Sbjct:   132 EELAQQYELIIQECGHGRFQWALFFVLGMALMADGVEVFVVGFVLPSAETDLCIPNSGSG 191

Query:    67 WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
             WL +   LGM+ G++FWG LAD  GRK +L+  + V+G     SS  Q YG FL  R ++
Sbjct:   192 WLGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLLCRLLS 251

Query:   127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP---LNLRIE 183
             GF + G +   F Y  E      R + L WL MFW  G I   A+AW +IP    +  + 
Sbjct:   252 GFGIGGAIPTVFSYFAEVLAREKRGEHLSWLCMFWMIGGIYASAMAWAIIPHYGWSFSMG 311

Query:   184 TPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
             + Y  + SW +FV + ++P +   + LT  PESP+FL E G++D+A  IL+ +   N
Sbjct:   312 SAY-QFHSWRVFVIVCALPCVSSVVALTFMPESPRFLLEVGKHDEAWMILKLIHDTN 367

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	249
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	6e-45
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	4e-23
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	5e-18
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	1e-16
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-13
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	3e-11
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	1e-09
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	6e-09
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	6e-07
PRK11102	377	PRK11102, PRK11102, bicyclomycin/multidrug efflux	2e-06
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	2e-06
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	6e-06
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	8e-06
TIGR00886	366	TIGR00886, 2A0108, nitrite extrusion protein (nitr	7e-05
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	2e-04
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	3e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-04
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	8e-04
TIGR00900	365	TIGR00900, 2A0121, H+ Antiporter protein	0.001

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score =  160 bits (405), Expect = 6e-45
 Identities = 87/237 (36%), Positives = 125/237 (52%), Gaps = 4/237 (1%)

Query: 7   EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
           E+    +E  +   G+G+F + L    GL      + + V+ FVLPSA+ D  +  S KG
Sbjct: 146 EELAQQYELIIQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKG 205

Query: 67  WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
            L     LGM+ G++FWG LAD  GRK  L+  L V+G     SS  Q YG FL  R ++
Sbjct: 206 MLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLS 265

Query: 127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP---LNLRIE 183
           GF + G + I F Y  EF     R + L WL MFW  G I   A+AW +IP    + ++ 
Sbjct: 266 GFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMG 325

Query: 184 TPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN 240
           + Y  + SW +FV + + P +     LT  PESP+F  E G++D+A  IL+ +   N
Sbjct: 326 SAY-QFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN 381

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 97.0 bits (242), Expect = 4e-23
 Identities = 52/199 (26%), Positives = 89/199 (44%), Gaps = 19/199 (9%)

Query: 46  VLSFVLPSAQCDFGMTSSDKGWLNAAP----MLGMVFGSYFWGCLADTQGRKITLIGALL 101
                  +   ++ +   D  W          +G++ GS+ +G L+D  GRK  L+ + L
Sbjct: 107 SYDTFSSTIVTEWDLVCEDA-WKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTL 165

Query: 102 VDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFW 161
           V  + G+ ++ +  Y VFL  R + G  + G          EF P   R  V   +++F+
Sbjct: 166 VTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFF 225

Query: 162 TGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLF 221
           + G+++LP VA+  IP              W      VS+P+ L  L     PESP++L 
Sbjct: 226 SLGLVLLPLVAY-FIP-------------DWRWLQLAVSLPTFLFFLLSWFVPESPRWLI 271

Query: 222 ECGEYDQALDILRQMFSAN 240
             G  ++AL IL+++   N
Sbjct: 272 SQGRIEEALKILQRIAKIN 290

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 82.0 bits (203), Expect = 5e-18
 Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 10/196 (5%)

Query: 25  FHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWG 84
           + +  +I   L+       +  + F  P+   ++G+     G+L +A ++GM FG+ F+G
Sbjct: 14  YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFG 73

Query: 85  CLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEF 144
            LAD  GR+  L+ ++L+  +  +  ++A      L LRF+ G  + G +      + E+
Sbjct: 74  PLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEY 133

Query: 145 QPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSI 204
            P  +R   +  +   +  G  V   +A  LIP          ++   +LF      P +
Sbjct: 134 APKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP----------VFGWRSLFYVGGIAPLL 183

Query: 205 LLALWLTRFPESPKFL 220
           LL L +   PES  FL
Sbjct: 184 LLLLLMRFLPESIDFL 199

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 51/218 (23%), Positives = 88/218 (40%), Gaps = 18/218 (8%)

Query: 28  ILVIFGGLLYAY--------AAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFG 79
           ++   GG L+ Y          +      F   ++      ++   G + +   +G + G
Sbjct: 3   LVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIG 62

Query: 80  SYFWGCLADTQGRKITLI--GALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGIC 137
           S F G L D  GRK +L+    L V G      +  + + + +  R I G  V G   + 
Sbjct: 63  SLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLV 122

Query: 138 FPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVT 197
             Y+ E  P   R  +    ++  T GI+V   +   L          Y     W + + 
Sbjct: 123 PMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLN--------KYSNSDGWRIPLG 174

Query: 198 LVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQ 235
           L  VP+ILL + L   PESP++L   G+ ++A  +L +
Sbjct: 175 LQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAK 212

Length = 449

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 42/183 (22%), Positives = 74/183 (40%), Gaps = 8/183 (4%)

Query: 30  VIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT 89
           ++   L +  + +   +LS  LP    D G+++S  G + +A  LG   GS   G L+D 
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 90  QGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAY 149
            GR+  L+  LL+  L  +  + A    + L  RF+ G             + E+ P   
Sbjct: 61  FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120

Query: 150 REKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW 209
           R + L      +  G ++ P +  LL             +    L + ++ +   LL L+
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLLA--------ESLGWRWLFLILAILGLLLALLLLF 172

Query: 210 LTR 212
           L R
Sbjct: 173 LLR 175

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 54/223 (24%), Positives = 85/223 (38%), Gaps = 23/223 (10%)

Query: 27  YILVIFGGLLYAYAAI----SITVLSFVLPSAQCDF--------GMTSSDKGWLNAAPML 74
           Y  V    L+ A   +       V+   L     +F          +SS  G + +  ++
Sbjct: 23  YWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLV 82

Query: 75  GMVFGSYFWGCLADTQGRKITL--IGALLVDGLCGI-ASSVAQYYGVFLALRFINGFAVT 131
           G   G+ F G L+D  GRK +L  I  L V G   +  ++ A    + +  R + G  V 
Sbjct: 83  GGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVG 142

Query: 132 GTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSS 191
               +   YL E  P A R  +    ++  T GI+V        + LN  +     L   
Sbjct: 143 IASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQ 202

Query: 192 WNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILR 234
                    +P+ LL L L   PESP++L   G  ++A   L 
Sbjct: 203 L--------IPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLA 237

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 52/233 (22%), Positives = 96/233 (41%), Gaps = 22/233 (9%)

Query: 31  IFGGLLYAY--AAISITVLS---FVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGC 85
             GGLL+ Y  A IS TV S     +          +S  G+  A+ ++G + G    G 
Sbjct: 18  TLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGY 77

Query: 86  LADTQGRKITLIGALLVDGLCGIASSVAQ------------YYGVFLALRFINGFAVTGT 133
            ++  GR+ +L  A ++  +  + S+  +            Y   F+  R I G  V   
Sbjct: 78  CSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLA 137

Query: 134 LGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYS-SW 192
             +   Y+ E  P   R K++ + +     G +V+  V + +     R     +L +  W
Sbjct: 138 SMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFI----ARSGDASWLNTDGW 193

Query: 193 NLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSANTGKEI 245
                  ++P++L  + L   PE+P++L   G+ +QA  ILR++       + 
Sbjct: 194 RYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQA 246

Length = 479

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 55.1 bits (133), Expect = 6e-09
 Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 9/185 (4%)

Query: 35  LLYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRK 93
           L    A +  ++L   LP     D G++ ++ G L  A  LG        G L+D  GR+
Sbjct: 3   LAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRR 62

Query: 94  ITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKV 153
             L+  LL+  L  +    A    + L LR + G             + ++ P   R + 
Sbjct: 63  RVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRA 122

Query: 154 LCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRF 213
           L  L   +  G  + P +  LL           F + +  L + ++++ + +LA  L   
Sbjct: 123 LGLLSAGFGLGAALGPLLGGLLA--------SLFGWRAAFLILAILALLAAVLAALLLPR 174

Query: 214 PESPK 218
           P    
Sbjct: 175 PPPES 179

Length = 346

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 49.5 bits (118), Expect = 6e-07
 Identities = 39/185 (21%), Positives = 71/185 (38%), Gaps = 9/185 (4%)

Query: 35  LLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKI 94
           L +   A    +++ VL     +FG+T+ D   L +A ++   FG+  +G   D  GR++
Sbjct: 19  LGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRL 78

Query: 95  TLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVL 154
            ++ ++++     +A   A  Y      R + G  + G  G    Y+ E  P   R K  
Sbjct: 79  PMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKAS 138

Query: 155 CWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFP 214
             L   +  G +V   V  L++P              W     +  +P I         P
Sbjct: 139 GLLISGYAVGAVVAAQVYSLVVP---------VWGDGWRALFFISILPIIFALWLRKNIP 189

Query: 215 ESPKF 219
           E+  +
Sbjct: 190 EAEDW 194

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system; Provisional

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query: 51  LPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIAS 110
           LP    DFG+++       +A +LG   G  F+G +AD+ GRK  ++G  LV  L  +A 
Sbjct: 14  LPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVAC 73

Query: 111 SVAQYYGVFLALRFINGFA 129
           ++AQ     + +RF++G A
Sbjct: 74  ALAQTIDQLIYMRFLHGLA 92

Length = 377

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 43/190 (22%), Positives = 69/190 (36%), Gaps = 12/190 (6%)

Query: 28  ILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLA 87
              +  G L     + I +     P    D    +S         +LG   G   WG L+
Sbjct: 5   AFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLS 64

Query: 88  DTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPT 147
           D  GR+  L+  L +  L  +  +++      L LRF+  F  +    I    + +  P 
Sbjct: 65  DRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPG 124

Query: 148 AYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWN-LFVTLVSVPSILL 206
               ++   L M       + PAVA LL    L       ++ SW+ +F  L     +L 
Sbjct: 125 EELSRIYSIL-MPVLA---LAPAVAPLLGGYIL-------VWLSWHAIFAFLSLAGILLS 173

Query: 207 ALWLTRFPES 216
           AL     PE+
Sbjct: 174 ALIFFILPET 183

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 49/204 (24%), Positives = 81/204 (39%), Gaps = 19/204 (9%)

Query: 47  LSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC 106
           LSF  P  Q D G++++  G++ +A   G V G +  G L D  G + TL   +++ G+ 
Sbjct: 13  LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVF 72

Query: 107 GIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLC-WLEMFWTGGI 165
               + A  Y     LR + G A           +  + P + R   +  +      GGI
Sbjct: 73  TGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGI 132

Query: 166 IVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLAL----WLTRFPESPKFLF 221
           I  P V W+LI            + SW     +  V  I+  +    ++   P+  K+L 
Sbjct: 133 IGGPLVGWILI------------HFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLT 180

Query: 222 ECGEY--DQALDILRQMFSANTGK 243
           E  +Y     L   +Q    +T K
Sbjct: 181 EEEKYIVVGGLLAEQQGKGPSTPK 204

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 26/78 (33%), Positives = 43/78 (55%)

Query: 57  DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYY 116
           +FG+  +  GW  +A +LG++ G+   G LAD  GRK  LI ++ + GL  +A++ A  +
Sbjct: 44  EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDF 103

Query: 117 GVFLALRFINGFAVTGTL 134
              L  R + G  + G L
Sbjct: 104 PSLLVARLLTGVGLGGAL 121

Length = 406

>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator)

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 57  DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL-CGIASSVAQY 115
           D G++++  G L A P+L         G L D  G + T   +LL+  + C  A    Q 
Sbjct: 31  DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQS 90

Query: 116 YGVFLALRFINGFAVTGTLGICFPYLGEFQP 146
           Y V L LR   G A  G+   C P++  F P
Sbjct: 91  YSVLLLLRLFIGIA-GGSFASCMPWISFFFP 120

[Transport and binding proteins, Anions]. Length = 366

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 23/84 (27%), Positives = 37/84 (44%)

Query: 46  VLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL 105
           V   +LP    D G++    G L  A  LG+  G+     L     R+  L+G L +  +
Sbjct: 31  VPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV 90

Query: 106 CGIASSVAQYYGVFLALRFINGFA 129
             + S++A  + V L  R + G A
Sbjct: 91  SNLLSALAPSFAVLLLARALAGLA 114

Length = 394

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 40/142 (28%), Positives = 57/142 (40%), Gaps = 1/142 (0%)

Query: 35  LLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKI 94
           LLY    + +  L+  LP    + G + S      A    G V GS  +G LAD  G ++
Sbjct: 257 LLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV 316

Query: 95  TLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVL 154
           T +  LL      +  S      + L L  I GF V G     +  +  F PTA R   +
Sbjct: 317 TALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGV 376

Query: 155 CW-LEMFWTGGIIVLPAVAWLL 175
            W + +   G II      +LL
Sbjct: 377 GWAIGIGRLGAIIGPILAGYLL 398

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 35/175 (20%), Positives = 69/175 (39%), Gaps = 3/175 (1%)

Query: 29  LVIFGGLLYAYAAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLA 87
           L++   L +   +     L   LP    +  G+++++ G L +   LG + G+   G L+
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLS 235

Query: 88  DTQGRK-ITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQP 146
           D  GR+ + L+  LL+  L  +  ++A    + L    + GF +            E  P
Sbjct: 236 DRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAP 295

Query: 147 TAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSV 201
              R         F + G  + P +A LL+         + + ++  L   L+ +
Sbjct: 296 PEARGTASGLFNTFGSLGGALGPLLAGLLLD-TGGYGGVFLILAALALLAALLLL 349

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 11/138 (7%)

Query: 35  LLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKI 94
           L Y +      ++ +++   + D G+T  +  +L  A  +G  FG   +G LAD  GRK 
Sbjct: 25  LGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKP 84

Query: 95  TLIGALLV----DGLCGIASSVAQYYGVFLAL-RFINGFAVTGTLGICFPYLGEFQPTAY 149
            ++ +++      GL G+AS V     + L L RFI G  + G       Y  E  P   
Sbjct: 85  LMMWSIVAYSVGTGLSGLASGV-----IMLTLSRFIVGMGMAGEYACASTYAVESWPKHL 139

Query: 150 REKVLCWL-EMFWTGGII 166
           + K   +L   F  G II
Sbjct: 140 KSKASAFLVSGFGIGNII 157

Length = 426

>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 29/140 (20%), Positives = 44/140 (31%), Gaps = 3/140 (2%)

Query: 38  AYAAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITL 96
            +  +    +  + P  Q    G  S+  GW+ AA  LG + G+   G L     R   +
Sbjct: 221 LFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALM 280

Query: 97  IGALLVDGLC-GIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLC 155
            GA+ V GL   +       + +FL L F  G             L    P     +V  
Sbjct: 281 TGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFG 340

Query: 156 WLEMF-WTGGIIVLPAVAWL 174
                      + L     L
Sbjct: 341 AQFSLSHAAWPLGLILAGPL 360

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	249
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.96
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.94
TIGR00891	405	2A0112 putative sialic acid transporter.	99.93
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.93
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.93
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.93
PRK11663	434	regulatory protein UhpC; Provisional	99.92
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.92
TIGR00895	398	2A0115 benzoate transport.	99.92
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.92
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.92
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.92
PRK03545	390	putative arabinose transporter; Provisional	99.92
PRK10642	490	proline/glycine betaine transporter; Provisional	99.92
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.92
PRK12307	426	putative sialic acid transporter; Provisional	99.92
TIGR00898	505	2A0119 cation transport protein.	99.91
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.91
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.91
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.91
PRK03893	496	putative sialic acid transporter; Provisional	99.9
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.9
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.9
KOG0254|consensus	513		99.89
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.89
PRK03699	394	putative transporter; Provisional	99.89
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.89
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.89
PRK10091	382	MFS transport protein AraJ; Provisional	99.89
KOG1330|consensus	493		99.89
TIGR00893	399	2A0114 d-galactonate transporter.	99.89
PRK09952	438	shikimate transporter; Provisional	99.89
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.88
KOG0255|consensus	521		99.88
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.88
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.88
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.88
TIGR00900	365	2A0121 H+ Antiporter protein.	99.88
PRK15075	434	citrate-proton symporter; Provisional	99.88
PLN00028	476	nitrate transmembrane transporter; Provisional	99.87
PRK10504	471	putative transporter; Provisional	99.87
PRK10133	438	L-fucose transporter; Provisional	99.87
PRK12382	392	putative transporter; Provisional	99.87
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.87
PRK11043	401	putative transporter; Provisional	99.87
KOG0569|consensus	485		99.87
PRK05122	399	major facilitator superfamily transporter; Provisi	99.87
PRK09705	393	cynX putative cyanate transporter; Provisional	99.86
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.86
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.86
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.86
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.86
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.86
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.85
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.85
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.85
KOG0253|consensus	528		99.85
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.85
PRK09874	408	drug efflux system protein MdtG; Provisional	99.85
TIGR00805	633	oat sodium-independent organic anion transporter.	99.84
PRK10054	395	putative transporter; Provisional	99.84
PTZ00207	591	hypothetical protein; Provisional	99.83
PRK03633	381	putative MFS family transporter protein; Provision	99.83
KOG2532|consensus	466		99.83
KOG0252|consensus	538		99.83
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.83
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.83
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.82
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.82
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.82
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.82
PRK10642	490	proline/glycine betaine transporter; Provisional	99.82
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.82
PRK10489	417	enterobactin exporter EntS; Provisional	99.82
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.81
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.81
KOG2615|consensus	451		99.8
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.8
KOG2533|consensus	495		99.79
PRK11010	491	ampG muropeptide transporter; Validated	99.77
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.76
PRK11902	402	ampG muropeptide transporter; Reviewed	99.75
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.75
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.75
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.75
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.73
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.73
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.73
KOG3764|consensus	464		99.72
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.72
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.72
PRK15011	393	sugar efflux transporter B; Provisional	99.72
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.72
TIGR00901	356	2A0125 AmpG-related permease.	99.72
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.72
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.72
PRK09528	420	lacY galactoside permease; Reviewed	99.71
PRK15011	393	sugar efflux transporter B; Provisional	99.71
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.7
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.7
PRK05122	399	major facilitator superfamily transporter; Provisi	99.69
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.68
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.68
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.67
PRK10489	417	enterobactin exporter EntS; Provisional	99.66
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.66
PRK09528	420	lacY galactoside permease; Reviewed	99.65
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.65
PRK09874	408	drug efflux system protein MdtG; Provisional	99.64
PRK03545	390	putative arabinose transporter; Provisional	99.64
PRK09952	438	shikimate transporter; Provisional	99.64
KOG2504|consensus	509		99.63
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.63
PRK12382	392	putative transporter; Provisional	99.63
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.63
PRK03699	394	putative transporter; Provisional	99.62
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.62
PRK09705	393	cynX putative cyanate transporter; Provisional	99.62
PRK03633	381	putative MFS family transporter protein; Provision	99.61
TIGR00893	399	2A0114 d-galactonate transporter.	99.61
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.61
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.6
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.6
PRK03893	496	putative sialic acid transporter; Provisional	99.59
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.58
PRK12307	426	putative sialic acid transporter; Provisional	99.58
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.58
TIGR00895	398	2A0115 benzoate transport.	99.56
TIGR00891	405	2A0112 putative sialic acid transporter.	99.56
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.56
PRK10504	471	putative transporter; Provisional	99.55
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.55
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.54
TIGR00900	365	2A0121 H+ Antiporter protein.	99.54
KOG2325|consensus	488		99.54
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.54
TIGR00898	505	2A0119 cation transport protein.	99.53
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.53
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.53
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.53
PRK11663	434	regulatory protein UhpC; Provisional	99.52
PRK11010	491	ampG muropeptide transporter; Validated	99.51
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.51
PRK15075	434	citrate-proton symporter; Provisional	99.51
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.51
PLN00028	476	nitrate transmembrane transporter; Provisional	99.5
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.5
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.49
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.48
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.45
PRK09848	448	glucuronide transporter; Provisional	99.44
KOG0569|consensus	485		99.43
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.42
PRK11902	402	ampG muropeptide transporter; Reviewed	99.42
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.42
PRK10054	395	putative transporter; Provisional	99.42
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.42
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.42
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.41
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.41
PRK10091	382	MFS transport protein AraJ; Provisional	99.4
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.39
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.39
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.39
KOG2504|consensus	509		99.39
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.38
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.38
PRK10429	473	melibiose:sodium symporter; Provisional	99.38
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.37
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.37
PRK09669	444	putative symporter YagG; Provisional	99.37
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.37
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.36
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.36
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.36
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.36
TIGR00901	356	2A0125 AmpG-related permease.	99.35
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.34
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.34
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.34
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.33
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.32
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.32
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.32
PF13347	428	MFS_2: MFS/sugar transport protein	99.32
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.3
KOG4686|consensus	459		99.3
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.29
PRK09669	444	putative symporter YagG; Provisional	99.28
PF13347	428	MFS_2: MFS/sugar transport protein	99.28
PRK10133	438	L-fucose transporter; Provisional	99.28
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.27
PRK10429	473	melibiose:sodium symporter; Provisional	99.27
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.27
KOG0253|consensus	528		99.27
PRK11043	401	putative transporter; Provisional	99.23
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.23
COG2211	467	MelB Na+/melibiose symporter and related transport	99.16
PRK11462	460	putative transporter; Provisional	99.15
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.13
KOG3626|consensus	735		99.12
KOG2563|consensus	480		99.09
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.09
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.08
PRK11462	460	putative transporter; Provisional	99.07
COG0477	338	ProP Permeases of the major facilitator superfamil	99.07
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.06
KOG2532|consensus	466		99.04
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.01
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.01
COG2211	467	MelB Na+/melibiose symporter and related transport	99.01
PRK09848	448	glucuronide transporter; Provisional	99.0
KOG0252|consensus	538		99.0
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.98
KOG2816|consensus	463		98.98
KOG0254|consensus	513		98.97
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.94
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.93
KOG3762|consensus	618		98.89
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.86
KOG3764|consensus	464		98.86
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.86
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.85
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.85
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.84
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.83
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.82
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.76
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.69
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.67
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.66
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.63
KOG4686|consensus	459		98.56
KOG2533|consensus	495		98.54
PF12832	77	MFS_1_like: MFS_1 like family	98.54
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.48
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.48
KOG0255|consensus	521		98.41
KOG2816|consensus	463		98.41
KOG0637|consensus	498		98.36
PTZ00207	591	hypothetical protein; Provisional	98.34
KOG2563|consensus	480		98.22
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.22
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.12
KOG2615|consensus	451		98.08
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.95
KOG1237|consensus	571		97.91
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.87
KOG4332|consensus	454		97.84
KOG3574|consensus	510		97.81
TIGR00805	633	oat sodium-independent organic anion transporter.	97.81
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.7
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.7
KOG3098|consensus	461		97.66
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.58
KOG3098|consensus	461		97.5
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.46
PRK03612	521	spermidine synthase; Provisional	97.41
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.39
KOG1330|consensus	493		97.34
COG3202	509	ATP/ADP translocase [Energy production and convers	97.22
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.18
KOG2325|consensus	488		96.78
KOG3626|consensus	735		96.62
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.46
KOG3762|consensus	618		96.33
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.21
KOG1479|consensus	406		96.05
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	95.95
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.62
KOG3097|consensus	390		95.49
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.2
KOG3810|consensus	433		93.33
KOG0637|consensus	498		93.14
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	93.0
KOG1479|consensus	406		92.11
KOG3880|consensus	409		91.17
COG4262	508	Predicted spermidine synthase with an N-terminal m	90.43
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	89.88
KOG4332|consensus	454		89.7
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	89.52
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	88.11
KOG3880|consensus	409		86.98
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	84.82
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	84.03
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	81.77
KOG3810|consensus	433		80.22

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.96  E-value=2.9e-28  Score=215.37  Aligned_cols=223  Identities=38%  Similarity=0.673  Sum_probs=193.0

Q ss_pred             HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHH
Q psy6455          18 AAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLI   97 (249)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~   97 (249)
                      ++....+++|.+++++.++.+..++....++..+|.+.+++|++..+.+++.+++.++.+++++++|+++||+|||++++
T Consensus       157 ~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~li  236 (742)
T TIGR01299       157 QECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLL  236 (742)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence            44556788888888888888888888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455          98 GALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP  177 (249)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~  177 (249)
                      ++.++.+++.++++++++++.++++|++.|++.|+..+...+++.|++|++.|++.+++.+.++.+|.++++.++..+..
T Consensus       237 i~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~  316 (742)
T TIGR01299       237 ICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIP  316 (742)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998877653


Q ss_pred             ccccc-c-CcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHHHhhCChHHHHHHHHHHHhhc
Q psy6455         178 LNLRI-E-TPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSAN  240 (249)
Q Consensus       178 ~~~~~-~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (249)
                      ..+.. . .......+||+.+++.+++.++..++.+++||+|+|...+++.+++.+.++++.+.+
T Consensus       317 ~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n  381 (742)
T TIGR01299       317 HYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN  381 (742)
T ss_pred             hccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCC
Confidence            22100 0 001123579999999988888888778889999999988888888888887776554

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.94  E-value=1.2e-25  Score=194.13  Aligned_cols=220  Identities=20%  Similarity=0.290  Sum_probs=177.6

Q ss_pred             HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-----CCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcc
Q psy6455          17 LAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDF-----GMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQG   91 (249)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~G   91 (249)
                      .++.++.+++++.+.++.++.+..+++...++...|.+.+++     +.+..+.+++.+.+.++..++++++|+++||+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~G   84 (502)
T TIGR00887         5 ADTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLG   84 (502)
T ss_pred             hhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            355677788888888888999999999999998888776542     344556789999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHH
Q psy6455          92 RKITLIGALLVDGLCGIASSVAQY------YGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGI  165 (249)
Q Consensus        92 rr~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  165 (249)
                      ||++++++.++..++.+++.++++      ++.+++.|++.|++.|...+....+++|++|+++|++++++.+....+|.
T Consensus        85 rr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~  164 (502)
T TIGR00887        85 RKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGI  164 (502)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Confidence            999999999999999888887654      78899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccc-c--Cc---------ccccchhHHHHHHHHHHHHHHHHHhhcccCChhHHHhhCChH-HHHHH
Q psy6455         166 IVLPAVAWLLIPLNLRI-E--TP---------YFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYD-QALDI  232 (249)
Q Consensus       166 ~~~~~l~~~l~~~~~~~-~--~~---------~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  232 (249)
                      .+++.++..+....... +  ..         ....++||+.+.+.++++++..+..+++||+|+|...+++++ ++.+.
T Consensus       165 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~  244 (502)
T TIGR00887       165 LAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASD  244 (502)
T ss_pred             HHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHH
Confidence            99998887664211000 0  00         001247999999988888888777888999999987766543 33443


Q ss_pred             HHHH
Q psy6455         233 LRQM  236 (249)
Q Consensus       233 ~~~~  236 (249)
                      +++.
T Consensus       245 ~~~~  248 (502)
T TIGR00887       245 MSAV  248 (502)
T ss_pred             HHHH
Confidence            4433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.93  E-value=6.4e-25  Score=184.13  Aligned_cols=190  Identities=21%  Similarity=0.335  Sum_probs=169.3

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q psy6455          22 YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALL  101 (249)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~  101 (249)
                      .++++|+.+....+.++...++....++..|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||++++.+.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   85 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV   85 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            45567788888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy6455         102 VDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLR  181 (249)
Q Consensus       102 ~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~  181 (249)
                      +.+++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++.+++.+.+..  
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~--  163 (405)
T TIGR00891        86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW--  163 (405)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998886332  


Q ss_pred             ccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHH
Q psy6455         182 IETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFL  220 (249)
Q Consensus       182 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (249)
                             ..+||+.|++.++..++..+.....||++++.
T Consensus       164 -------~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~  195 (405)
T TIGR00891       164 -------GDGWRALFFISILPIIFALWLRKNIPEAEDWK  195 (405)
T ss_pred             -------CccHHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence                   12599999887777666666566678876543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.93  E-value=8.2e-25  Score=184.39  Aligned_cols=190  Identities=17%  Similarity=0.243  Sum_probs=167.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q psy6455          24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD  103 (249)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~  103 (249)
                      |.+|+.+..+++.+++...+....+...|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~   83 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW   83 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence            44677788888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy6455         104 GLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE  183 (249)
Q Consensus       104 ~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~  183 (249)
                      .++.++++++++++.+++.|++.|++.+...+....++.|++|+++|++++++++....+|..+++.+++++.+...   
T Consensus        84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~---  160 (412)
T TIGR02332        84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG---  160 (412)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---
Confidence            99999999999999999999999999999888888999999999999999999999999999999999998863210   


Q ss_pred             CcccccchhHHHHHHHHHHHHHHHHH-hhcccCChh
Q psy6455         184 TPYFLYSSWNLFVTLVSVPSILLALW-LTRFPESPK  218 (249)
Q Consensus       184 ~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~  218 (249)
                        ..+..+||+.|++.+++.++..++ .+++||+|+
T Consensus       161 --~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       161 --LMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             --CCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence              002358999999988887766554 455688774

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.93  E-value=9.2e-25  Score=187.50  Aligned_cols=201  Identities=19%  Similarity=0.317  Sum_probs=164.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc--------CCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHH
Q psy6455          24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDF--------GMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKIT   95 (249)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~   95 (249)
                      +++++..+++.++.+..+++...+++..|.+.+++        +.+..+.+++.+.+.++..++++++|+++||+|||++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~   87 (479)
T PRK10077          8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (479)
T ss_pred             hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            44566677777788888888888888887777665        8888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh------------hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHH
Q psy6455          96 LIGALLVDGLCGIASSVA------------QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTG  163 (249)
Q Consensus        96 ~~~~~~~~~i~~~~~~~~------------~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  163 (249)
                      ++++.++..++.+.+++.            +.++.+++.|+++|++.|...+...++++|++|+++|++++++.+.+..+
T Consensus        88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~  167 (479)
T PRK10077         88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF  167 (479)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence            999999998888776652            23567889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHHHhhCChH
Q psy6455         164 GIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYD  227 (249)
Q Consensus       164 g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (249)
                      |..+++.++..+......   ..-+..+||+.|++.+++.++..+..+++||+|++...+++.+
T Consensus       168 G~~~~~~~~~~~~~~~~~---~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~  228 (479)
T PRK10077        168 GQLVVYFVNYFIARSGDA---SWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQE  228 (479)
T ss_pred             HHHHHHHHHHHHhccCcc---cccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHH
Confidence            999998887766432100   0002468999999988888887776777899987654444433

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=6.2e-25  Score=179.03  Aligned_cols=177  Identities=20%  Similarity=0.228  Sum_probs=166.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q psy6455          27 YILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC  106 (249)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~  106 (249)
                      +..++.+.++.|..+.........+|.+.+|+|+|...+|+..+.|.++..+++++...+.||+.||++++....++.++
T Consensus        12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~   91 (394)
T COG2814          12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVS   91 (394)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            44556666777888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc
Q psy6455         107 GIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPY  186 (249)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~  186 (249)
                      .+++++++|++.++++|++.|+..|...+...++..++.|+++|++++++...+..++.++|..++.++.          
T Consensus        92 n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig----------  161 (394)
T COG2814          92 NLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLG----------  161 (394)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHH----------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999997          


Q ss_pred             cccchhHHHHHHHHHHHHHHHHH-hhccc
Q psy6455         187 FLYSSWNLFVTLVSVPSILLALW-LTRFP  214 (249)
Q Consensus       187 ~~~~~w~~~~~~~~~~~~~~~~~-~~~~~  214 (249)
                       +..|||+.|++.+.+.++..+. +..+|
T Consensus       162 -~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         162 -QLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             -HHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence             5679999999999999998887 44467

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.92  E-value=4.1e-24  Score=181.39  Aligned_cols=185  Identities=17%  Similarity=0.233  Sum_probs=161.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q psy6455          23 GKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV  102 (249)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~  102 (249)
                      +..++..+....+.++...+.....+..+|.+.+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~   97 (434)
T PRK11663         18 RYWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIA   97 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHH
Confidence            34455566666667777777777888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy6455         103 DGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRI  182 (249)
Q Consensus       103 ~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~  182 (249)
                      ..++.+++.++++++.+++.|++.|++.|...+...+++.|++|+++|++++++++.+..+|..++|.+.+++.      
T Consensus        98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~------  171 (434)
T PRK11663         98 TGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA------  171 (434)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            99999999999999999999999999999888999999999999999999999999999999999999999887      


Q ss_pred             cCcccccchhHHHHHHHHHHHHHHHHH-hhcccCChh
Q psy6455         183 ETPYFLYSSWNLFVTLVSVPSILLALW-LTRFPESPK  218 (249)
Q Consensus       183 ~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~  218 (249)
                           +..+||+.|++.+++.++..+. .++++|+|+
T Consensus       172 -----~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~  203 (434)
T PRK11663        172 -----LHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQ  203 (434)
T ss_pred             -----HcccHHHHHHHHHHHHHHHHHHHHHHcCCCHh
Confidence                 4468999999988776655443 445677664

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.92  E-value=3.3e-24  Score=183.19  Aligned_cols=185  Identities=25%  Similarity=0.287  Sum_probs=153.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccCCC--------CcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q psy6455          30 VIFGGLLYAYAAISITVLSFVLPSAQCDFGMT--------SSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALL  101 (249)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~  101 (249)
                      .+++.+..+...++...+....+.+..+++.+        ..+.+++.+.+.++..++++++|+++||+|||++++++.+
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~  109 (481)
T TIGR00879        30 SLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIAL  109 (481)
T ss_pred             HHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHH
Confidence            33444454556667777778888887777666        7899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh---HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH---HHH
Q psy6455         102 VDGLCGIASSVAQ---YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVA---WLL  175 (249)
Q Consensus       102 ~~~i~~~~~~~~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~---~~l  175 (249)
                      +..++.+++.+..   +++.+++.|++.|++.+...+....++.|++|+++|++++++++.+..+|..+++.++   ...
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~  189 (481)
T TIGR00879       110 LFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSL  189 (481)
T ss_pred             HHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9999988885543   4568999999999999999999999999999999999999999999999999999998   443


Q ss_pred             hcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHHHhhCC
Q psy6455         176 IPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGE  225 (249)
Q Consensus       176 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (249)
                      .           +..+||+.|++.++..++..+..+++||+|++...+++
T Consensus       190 ~-----------~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  228 (481)
T TIGR00879       190 N-----------NTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGR  228 (481)
T ss_pred             C-----------CCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCC
Confidence            2           34699999999777777776667778988765444333

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00895 2A0115 benzoate transport

Probab=99.92  E-value=1.2e-23  Score=175.81  Aligned_cols=190  Identities=24%  Similarity=0.435  Sum_probs=164.4

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHH
Q psy6455          20 AGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGA   99 (249)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~   99 (249)
                      .+.++++++.+....+..+..++.....++..|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~   88 (398)
T TIGR00895         9 QPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWS   88 (398)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHH
Confidence            34455566667777777777777788888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy6455         100 LLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLN  179 (249)
Q Consensus       100 ~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  179 (249)
                      .++..++.++..+.++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+++.+++.+.   
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~---  165 (398)
T TIGR00895        89 ILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI---  165 (398)
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHh---
Confidence            99999999888889999999999999999999999999999999999999999999999999999999999999887   


Q ss_pred             ccccCcccccchhHHHHHHHHHHHHHHHHH-hhcccCChhHH
Q psy6455         180 LRIETPYFLYSSWNLFVTLVSVPSILLALW-LTRFPESPKFL  220 (249)
Q Consensus       180 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  220 (249)
                              +..+|++.+++.++..++..++ ..++||++++.
T Consensus       166 --------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (398)
T TIGR00895       166 --------PVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFL  199 (398)
T ss_pred             --------hcccceeehhhhhhHHHHHHHHHHHhCCCCChHH
Confidence                    4468999998886555554444 55577776543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.92  E-value=4.4e-24  Score=183.95  Aligned_cols=181  Identities=18%  Similarity=0.169  Sum_probs=162.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHH
Q psy6455          26 HYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL  105 (249)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i  105 (249)
                      +|..+..+++..+....+..+++..+|.+.+++|.+.++.+|+.+.+.++..++++++|+++||+|||++++.+.++..+
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~   83 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL   83 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            45667788888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhhccccccccccccccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q psy6455         106 CGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQ-PTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIET  184 (249)
Q Consensus       106 ~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~  184 (249)
                      +.++++++++++.++++|+++|++.+...+.....+.+.+ |+++|+++++++.....+|..+||.+++++.        
T Consensus        84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~--------  155 (495)
T PRK14995         84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL--------  155 (495)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------
Confidence            9999999999999999999999999988887777776665 6789999999999999999999999999998        


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHH-hhcccCCh
Q psy6455         185 PYFLYSSWNLFVTLVSVPSILLALW-LTRFPESP  217 (249)
Q Consensus       185 ~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~  217 (249)
                         +..+||+.|++...+.++..++ .+++|+++
T Consensus       156 ---~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~  186 (495)
T PRK14995        156 ---EHFYWGSVFLINVPIVLVVMGLTARYVPRQA  186 (495)
T ss_pred             ---ccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence               4569999999987777666555 34456654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.92  E-value=8.4e-24  Score=177.93  Aligned_cols=186  Identities=22%  Similarity=0.287  Sum_probs=165.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q psy6455          24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD  103 (249)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~  103 (249)
                      +++|..+.+..+..+..+++....+...|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALF   90 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            46777788888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy6455         104 GLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE  183 (249)
Q Consensus       104 ~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~  183 (249)
                      .++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+.       
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-------  163 (406)
T PRK11551         91 GLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA-------  163 (406)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------
Confidence            9998888899999999999999999999989999999999999999999999999999999999999988775       


Q ss_pred             CcccccchhHHHHHHHHHHHHHHHHH-hhcccCChhHH
Q psy6455         184 TPYFLYSSWNLFVTLVSVPSILLALW-LTRFPESPKFL  220 (249)
Q Consensus       184 ~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  220 (249)
                          +..+|++.|++.+++.++..+. ..++||++++.
T Consensus       164 ----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  197 (406)
T PRK11551        164 ----GDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFA  197 (406)
T ss_pred             ----cccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence                4468999999887766655544 44578876543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.92  E-value=1.1e-24  Score=175.98  Aligned_cols=189  Identities=16%  Similarity=0.209  Sum_probs=175.5

Q ss_pred             HcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHH
Q psy6455          19 AAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIG   98 (249)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~   98 (249)
                      +...++++++++....+++....+.....+...|.+.++.++|.++.|++.+.+++.+.++-.+.|.++||.+.|..+..
T Consensus        20 ~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~   99 (448)
T COG2271          20 DKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAF   99 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehH
Confidence            34567888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH--HHHh
Q psy6455          99 ALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVA--WLLI  176 (249)
Q Consensus        99 ~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~--~~l~  176 (249)
                      ++++.++.+++++++++++.+.+..++.|+.+|...|++...+..|+|+++||+..+++++..++|+.+.|.+.  +++.
T Consensus       100 gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~  179 (448)
T COG2271         100 GLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA  179 (448)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988  6665


Q ss_pred             cccccccCcccccchhHHHHHHHHHHHHHHHHHhhc-ccCChh
Q psy6455         177 PLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTR-FPESPK  218 (249)
Q Consensus       177 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~  218 (249)
                                 .+.+||..|++.++++++..++.++ .+|+|+
T Consensus       180 -----------~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq  211 (448)
T COG2271         180 -----------FHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ  211 (448)
T ss_pred             -----------hccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence                       4459999999999999888877444 677765

>PRK03545 putative arabinose transporter; Provisional

Probab=99.92  E-value=1.1e-23  Score=176.44  Aligned_cols=180  Identities=17%  Similarity=0.121  Sum_probs=153.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q psy6455          27 YILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC  106 (249)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~  106 (249)
                      |..+..+.++.+..........+.+|.+.+++|.|.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++..++
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   87 (390)
T PRK03545          8 WLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIAS   87 (390)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            43334444444444444445566789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc
Q psy6455         107 GIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPY  186 (249)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~  186 (249)
                      .+.+.++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.          
T Consensus        88 ~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~----------  157 (390)
T PRK03545         88 HVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG----------  157 (390)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH----------
Confidence            9999999999999999999999988888888999999999999999999999999999999999999886          


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhh-cccCCh
Q psy6455         187 FLYSSWNLFVTLVSVPSILLALWLT-RFPESP  217 (249)
Q Consensus       187 ~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~  217 (249)
                       +..+||+.|++.+++.++..+..+ ..||.+
T Consensus       158 -~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  188 (390)
T PRK03545        158 -QYLGWRTTFLAIGGGALITLLLLIKLLPLLP  188 (390)
T ss_pred             -HHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence             446999999999888777765533 356543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.92  E-value=1.8e-23  Score=179.98  Aligned_cols=191  Identities=19%  Similarity=0.263  Sum_probs=154.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcc-hhhH-----HHHhHHHHHHHHHHHHhhhhhcchhHHHHHHH
Q psy6455          27 YILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSD-KGWL-----NAAPMLGMVFGSYFWGCLADTQGRKITLIGAL  100 (249)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~-----~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~  100 (249)
                      ++.+....++++...++...++...|.+.++++.+.+. .+++     .++..++..+++++.|+++||+|||++++++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            34566777888899999999999999998888654433 2222     46777899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHH--------HHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy6455         101 LVDGLCGIASSVAQYYGV--------FLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVA  172 (249)
Q Consensus       101 ~~~~i~~~~~~~~~~~~~--------l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~  172 (249)
                      ++.+++.++++++++++.        +++.|+++|++.|+.++...++++|++|+++|++..++.+.+..+|..+++.+.
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998764        789999999999999999999999999999999999999888888888888766


Q ss_pred             HHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHH
Q psy6455         173 WLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFL  220 (249)
Q Consensus       173 ~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (249)
                      ..+......   ......+||+.|++.+++.++..++...+||+|++.
T Consensus       175 ~~~~~~~~~---~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~  219 (490)
T PRK10642        175 VLISTIVGE---ANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQ  219 (490)
T ss_pred             HHHHHhcCH---HHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHH
Confidence            554321100   000246999999998776666555556689988764

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.92  E-value=5.2e-24  Score=176.59  Aligned_cols=168  Identities=17%  Similarity=0.101  Sum_probs=139.9

Q ss_pred             HHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy6455          40 AAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVF  119 (249)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l  119 (249)
                      .......+++.+|.+.+|+|+|..+.+++.+.+.+++.+++++.|+++||+|||++++.+......+.......++++.+
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l   82 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL   82 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            34556778889999999999999999999999999999999999999999999988776655555543323333689999


Q ss_pred             HHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHH
Q psy6455         120 LALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLV  199 (249)
Q Consensus       120 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~  199 (249)
                      ++.|++.|++.+. .......++|++|+++|++++++.+.+..+|.++++.+++++.           +..+||+.|++.
T Consensus        83 ~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~-----------~~~gWr~~f~~~  150 (368)
T TIGR00903        83 LACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY-----------TAGGLQLLIIPI  150 (368)
T ss_pred             HHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HccchHHHHHHH
Confidence            9999999999886 4555666799999999999999999999999999999999997           446999999998


Q ss_pred             HHHHHHHHHH-hhcccCChhH
Q psy6455         200 SVPSILLALW-LTRFPESPKF  219 (249)
Q Consensus       200 ~~~~~~~~~~-~~~~~~~~~~  219 (249)
                      +++.++..++ .+++||+|++
T Consensus       151 ~~l~~~~~~~~~~~lp~~p~~  171 (368)
T TIGR00903       151 AAVAAAGIILVLAALPALPFQ  171 (368)
T ss_pred             HHHHHHHHHHHHHHcCCCCCC
Confidence            8877666554 5557887754

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.92  E-value=2e-23  Score=176.65  Aligned_cols=185  Identities=21%  Similarity=0.279  Sum_probs=161.9

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q psy6455          23 GKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV  102 (249)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~  102 (249)
                      ++++++.+..+.+.++..+++.....+..|.+.+++|+++.+.+++.+.+.++..+++++.|+++||+|||++++++.++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~   92 (426)
T PRK12307         13 TRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVA   92 (426)
T ss_pred             CHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            35566667788888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy6455         103 DGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRI  182 (249)
Q Consensus       103 ~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~  182 (249)
                      .+++.+++.++++++.++++|++.|++.+..++....++.|++|+++|+++.++.+.+..+|.++++.+.+.+.      
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~------  166 (426)
T PRK12307         93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA------  166 (426)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc------
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888876      


Q ss_pred             cCcccccchhHHHHHHHHHHHHHHHHHhhcccCChh
Q psy6455         183 ETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPK  218 (249)
Q Consensus       183 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (249)
                           +..+||+.|++..+..++........||+++
T Consensus       167 -----~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~  197 (426)
T PRK12307        167 -----EAYGWRAAFFVGLLPVLLVIYIRARAPESKE  197 (426)
T ss_pred             -----ccCCHHHHHHHHHHHHHHHHHHHHHCCCChH
Confidence                 4468999998865544443333333566544

>TIGR00898 2A0119 cation transport protein

Probab=99.91  E-value=1.6e-23  Score=181.03  Aligned_cols=176  Identities=27%  Similarity=0.507  Sum_probs=158.7

Q ss_pred             hhccccccccCCC---CcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy6455          49 FVLPSAQCDFGMT---SSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFI  125 (249)
Q Consensus        49 ~~~~~~~~~~~~s---~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l  125 (249)
                      +..|.+.+|++++   ..+.+++.+.+.++..+++++.|+++||+|||++++++.++..++.++.+++++++.+++.|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            5678889999998   8899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHH
Q psy6455         126 NGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSIL  205 (249)
Q Consensus       126 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  205 (249)
                      .|++.+...+...+++.|++|+++|+.+.++.+.+..+|.++++.++..+.              +||+.+++.+++.++
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--------------~wr~~~~~~~i~~~~  255 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP--------------DWRWLQLAVSLPTFL  255 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999887763              599999999998888


Q ss_pred             HHHHhhcccCChhHHHhhCChHHHHHHHHHHHh
Q psy6455         206 LALWLTRFPESPKFLFECGEYDQALDILRQMFS  238 (249)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (249)
                      ..+..+++||+|++...+++.+++.+.+++..+
T Consensus       256 ~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~  288 (505)
T TIGR00898       256 FFLLSWFVPESPRWLISQGRIEEALKILQRIAK  288 (505)
T ss_pred             HHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHH
Confidence            877777889999988777777666665555443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.91  E-value=3.7e-23  Score=175.44  Aligned_cols=193  Identities=17%  Similarity=0.172  Sum_probs=150.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccC---CCCcchhh---HHHHhHHHHHHHHHHHHhhhhhcchhHHHH
Q psy6455          24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFG---MTSSDKGW---LNAAPMLGMVFGSYFWGCLADTQGRKITLI   97 (249)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~~---~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~   97 (249)
                      +++++.+....++.+...++...++...|.+.++++   .+..+.+.   +.+..+++..++++++|+++||+|||+++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~   97 (432)
T PRK10406         18 RRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSML   97 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            344555666677888899999999999999999875   44443333   344455566699999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhHH--------HHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q psy6455          98 GALLVDGLCGIASSVAQYY--------GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLP  169 (249)
Q Consensus        98 ~~~~~~~i~~~~~~~~~~~--------~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  169 (249)
                      ++.++..++.+++++++++        ..+++.|+++|++.|..++...++++|++|+++|++..++.+.+...|..+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~  177 (432)
T PRK10406         98 ISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLAL  177 (432)
T ss_pred             HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999887765        36889999999999999999999999999999999999998888888888887


Q ss_pred             HHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhH
Q psy6455         170 AVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKF  219 (249)
Q Consensus       170 ~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (249)
                      .+...+......   ......+||+.|++.+++.++..++....||++++
T Consensus       178 ~~~~~~~~~~~~---~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~  224 (432)
T PRK10406        178 LVVVVLQQTLED---AELREWGWRIPFALGAVLAVVALWLRRQLDETSQQ  224 (432)
T ss_pred             HHHHHHHHhCCH---HHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence            766554321100   00023699999999888887766555557887654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.91  E-value=4.6e-23  Score=172.82  Aligned_cols=181  Identities=17%  Similarity=0.191  Sum_probs=155.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHH
Q psy6455          26 HYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL  105 (249)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i  105 (249)
                      .|+.+..+.++.+......+.....+|.+.+++|.++++.++..+.+.++..+++++.|+++||+|||++++.+.++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~   97 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL   97 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence            45554555555555455555566678889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCc
Q psy6455         106 CGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETP  185 (249)
Q Consensus       106 ~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~  185 (249)
                      +.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.....++|..++|.+++.+.         
T Consensus        98 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~---------  168 (394)
T PRK10213         98 SCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG---------  168 (394)
T ss_pred             HHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            99999999999999999999999999999999999999999999999999999999999999999999997         


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhh-cccCCh
Q psy6455         186 YFLYSSWNLFVTLVSVPSILLALWLT-RFPESP  217 (249)
Q Consensus       186 ~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~  217 (249)
                        +..+||+.|++.+++.++..+... ..||++
T Consensus       169 --~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        169 --ELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             --hhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence              446999999998877766555433 356654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.91  E-value=5.1e-23  Score=173.52  Aligned_cols=174  Identities=19%  Similarity=0.193  Sum_probs=152.2

Q ss_pred             HHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh
Q psy6455          34 GLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA  113 (249)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~  113 (249)
                      .+..+..........+.+|.+.+++|.+..+.++..+++.+++.++++++|+++||+|||++++.+.++..++.+++.++
T Consensus        22 ~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a  101 (413)
T PRK15403         22 ILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT  101 (413)
T ss_pred             HHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc
Confidence            33344455666777888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhH
Q psy6455         114 QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWN  193 (249)
Q Consensus       114 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~  193 (249)
                      ++++.++++|+++|++.+...+....++.|.+|+++|++++++.+....+|..++|.+++.+.           +..+||
T Consensus       102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~-----------~~~gw~  170 (413)
T PRK15403        102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM-----------HFVHWK  170 (413)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhcCHH
Confidence            999999999999999887766777788999999999999999999999999999999999886           446999


Q ss_pred             HHHHHHHHHHHHHHHH-hhcccCChh
Q psy6455         194 LFVTLVSVPSILLALW-LTRFPESPK  218 (249)
Q Consensus       194 ~~~~~~~~~~~~~~~~-~~~~~~~~~  218 (249)
                      +.|++.++..++..+. .+.+||+++
T Consensus       171 ~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        171 VLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            9999998888777665 445787643

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.90  E-value=9.8e-23  Score=175.71  Aligned_cols=186  Identities=20%  Similarity=0.350  Sum_probs=163.6

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q psy6455          23 GKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV  102 (249)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~  102 (249)
                      ++.+++.+..+.+..+...++.....+.+|.+.+++|++..+.+++.+.+.++..++.++.|+++||+|||++++.+.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   94 (496)
T PRK03893         15 NRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL   94 (496)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            34566777778888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy6455         103 DGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRI  182 (249)
Q Consensus       103 ~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~  182 (249)
                      .+++.+++.++++++.+++.|++.|++.+..++....++.|.+|+++|+++.++......+|..++|.+.+.+.      
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~------  168 (496)
T PRK03893         95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV------  168 (496)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence            99999999999999999999999999999989999999999999999999999999999999999999999887      


Q ss_pred             cCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhH
Q psy6455         183 ETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKF  219 (249)
Q Consensus       183 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (249)
                           +..+||+.|++.++..++..+.....||++++
T Consensus       169 -----~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~  200 (496)
T PRK03893        169 -----PVWGWRALFFIGILPIIFALWLRKNLPEAEDW  200 (496)
T ss_pred             -----ccCCHHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence                 44699999987655554444444456776543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.90  E-value=9.6e-23  Score=170.01  Aligned_cols=176  Identities=20%  Similarity=0.345  Sum_probs=153.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH
Q psy6455          32 FGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS  111 (249)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~  111 (249)
                      .+....+..........+..|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||++++.+.++..++.+.+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~   88 (385)
T TIGR00710         9 LLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLA   88 (385)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            33333455566677777888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccch
Q psy6455         112 VAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSS  191 (249)
Q Consensus       112 ~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~  191 (249)
                      ++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+++.+++.+.           +..+
T Consensus        89 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~-----------~~~~  157 (385)
T TIGR00710        89 LSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL-----------VWLS  157 (385)
T ss_pred             HHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999886           4468


Q ss_pred             hHHHHHHHHHHHHHHHHHh-hcccCChh
Q psy6455         192 WNLFVTLVSVPSILLALWL-TRFPESPK  218 (249)
Q Consensus       192 w~~~~~~~~~~~~~~~~~~-~~~~~~~~  218 (249)
                      ||+.+++.++..++..+.. ++.||+++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (385)
T TIGR00710       158 WHAIFAFLSLAGILLSALIFFILPETLP  185 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            9999998887777666654 34566543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.90  E-value=8e-24  Score=181.19  Aligned_cols=199  Identities=13%  Similarity=0.112  Sum_probs=163.2

Q ss_pred             cHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcc
Q psy6455          12 TFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQG   91 (249)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~G   91 (249)
                      +.++.+.+...++..+..+....+.++....+...++...|.+.+++|++..+.|++.+.+.+++.+++++.|+++||+|
T Consensus        13 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g   92 (467)
T PRK09556         13 DLPLEVQRKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKN   92 (467)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccC
Confidence            33444444445566677777788888888888888999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHH
Q psy6455          92 RKITLIGALLVDGLCGIASSV-----AQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGII  166 (249)
Q Consensus        92 rr~~~~~~~~~~~i~~~~~~~-----~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  166 (249)
                      ||+++.++.++.++..+..++     +++++.+++.|++.|++.+...+....+++|++|+++|++++++++.+..+|.+
T Consensus        93 ~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~  172 (467)
T PRK09556         93 TKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGA  172 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhh
Confidence            999998888887777665554     578999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhh-cccCChh
Q psy6455         167 VLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLT-RFPESPK  218 (249)
Q Consensus       167 ~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~  218 (249)
                      +++.+..++....        ...+|+..|.+.+++.++..+..+ +.+++|+
T Consensus       173 l~~~i~~~~~~~~--------~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~  217 (467)
T PRK09556        173 GAGGVALWGANYF--------FDGHVIGMFIFPSIIALIIGFIGLRYGSDSPE  217 (467)
T ss_pred             HHHHHHHHHHHhh--------ccCcchhHHHHHHHHHHHHHHHHHHhCCCChh
Confidence            9998887665321        113689888888877776655533 3455553

>KOG0254|consensus

Probab=99.89  E-value=2.5e-22  Score=173.74  Aligned_cols=166  Identities=27%  Similarity=0.451  Sum_probs=150.4

Q ss_pred             chhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccccccccc
Q psy6455          64 DKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGE  143 (249)
Q Consensus        64 ~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~  143 (249)
                      +.+|+.+...++..+++++.|+++|++|||+.++++.++..++.+++++++|++.++++|++.|+|.|......+.+++|
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE  169 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE  169 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence            44899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHHHhh
Q psy6455         144 FQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFEC  223 (249)
Q Consensus       144 ~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (249)
                      +.|++.||...+..+....+|..++..++....+.          ..+||..+.+..+++++..+..++.||+|++..++
T Consensus       170 iap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~----------~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~  239 (513)
T KOG0254|consen  170 IAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV----------YAGWRIPLGLALIPAVILALGMLFLPESPRWLIEK  239 (513)
T ss_pred             cCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC----------CccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHc
Confidence            99999999999999999999999995555444210          04899999999999999988888889999999998


Q ss_pred             CChHHHHHHHHHHHhh
Q psy6455         224 GEYDQALDILRQMFSA  239 (249)
Q Consensus       224 ~~~~~~~~~~~~~~~~  239 (249)
                      ++.+++++.++++...
T Consensus       240 g~~~~a~~~l~~l~g~  255 (513)
T KOG0254|consen  240 GRLEEAKRSLKRLRGL  255 (513)
T ss_pred             CChHHHHHHHHHHhCC
Confidence            8888888888888763

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.89  E-value=4.5e-22  Score=167.50  Aligned_cols=184  Identities=18%  Similarity=0.151  Sum_probs=156.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q psy6455          24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD  103 (249)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~  103 (249)
                      +..+.......+..+...+....+.+.+|.+.+++|.|..+.++..+.+.+++.+++++.|+++||+|||++++.+.++.
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   88 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF   88 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            33444555555666666667777778888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy6455         104 GLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE  183 (249)
Q Consensus       104 ~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~  183 (249)
                      .++.+.+.++++++.+++.|++.|++.+...+...+++.|.+|+++|.+..++......++..++|.+++.+.       
T Consensus        89 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~-------  161 (406)
T PRK15402         89 ILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI-------  161 (406)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence            9999998899999999999999999988888888899999999999999999988888889999999999886       


Q ss_pred             CcccccchhHHHHHHHHHHHHHHHHHh-hcccCChh
Q psy6455         184 TPYFLYSSWNLFVTLVSVPSILLALWL-TRFPESPK  218 (249)
Q Consensus       184 ~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~  218 (249)
                          +..+||+.+++.++..++..+.. +..||+++
T Consensus       162 ----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        162 ----HVLPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             ----HccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence                34589999998888877766653 34676643

>PRK03699 putative transporter; Provisional

Probab=99.89  E-value=6.6e-22  Score=165.90  Aligned_cols=176  Identities=15%  Similarity=0.136  Sum_probs=156.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHH
Q psy6455          26 HYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL  105 (249)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i  105 (249)
                      |++....+.+..+..+......+..+|.+.+++|+|.++.+++.+.+.+++.+++++.|+++||+|||++++.+.++..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i   84 (394)
T PRK03699          5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMIL   84 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            45666677777888888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCc
Q psy6455         106 CGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETP  185 (249)
Q Consensus       106 ~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~  185 (249)
                      +.+++.++++++.+++.|++.|++.+...+....++.|++|+++|+++.+..+....+|..++|.+.+.+..        
T Consensus        85 ~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--------  156 (394)
T PRK03699         85 AVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA--------  156 (394)
T ss_pred             HHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence            999999999999999999999999998888889999999999999999999888889999999998887752        


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhh
Q psy6455         186 YFLYSSWNLFVTLVSVPSILLALWLT  211 (249)
Q Consensus       186 ~~~~~~w~~~~~~~~~~~~~~~~~~~  211 (249)
                        +..+||+.|.+.+++.++..++.+
T Consensus       157 --~~~gw~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        157 --RSIEWYWVYACIGLVYVAIFILTL  180 (394)
T ss_pred             --ccccHHHHHHHHHHHHHHHHHHHH
Confidence              236899999988887776655443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.89  E-value=2.5e-22  Score=165.30  Aligned_cols=171  Identities=25%  Similarity=0.353  Sum_probs=148.5

Q ss_pred             HHHHHHHHHHHHHHhhcc-ccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh
Q psy6455          35 LLYAYAAISITVLSFVLP-SAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA  113 (249)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~  113 (249)
                      ++.+...+......+.+| .+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||++++++.++.+++.++..++
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~   82 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA   82 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh
Confidence            445556666777788888 7889999999999999999999999999999999999999999999999999996666666


Q ss_pred             hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhH
Q psy6455         114 QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWN  193 (249)
Q Consensus       114 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~  193 (249)
                      ++.+.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.           +..+||
T Consensus        83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~-----------~~~~~~  151 (352)
T PF07690_consen   83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI-----------SYFGWR  151 (352)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHCHHC
T ss_pred             hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh-----------hccccc
Confidence            777799999999999999999999999999999999999999999999999999999999987           446899


Q ss_pred             HHHHHHHHHHHHHHHH-hhcccCC
Q psy6455         194 LFVTLVSVPSILLALW-LTRFPES  216 (249)
Q Consensus       194 ~~~~~~~~~~~~~~~~-~~~~~~~  216 (249)
                      +.|++.+++.++..++ ..+++++
T Consensus       152 ~~~~~~~~~~~~~~il~~~~~~~~  175 (352)
T PF07690_consen  152 WAFLISAILSLIAAILFILFLPEP  175 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCC---
T ss_pred             cccccccchhhhhhhhHhhhhhhc
Confidence            9999999999888775 2334433

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.89  E-value=1.3e-22  Score=174.46  Aligned_cols=177  Identities=18%  Similarity=0.233  Sum_probs=159.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH
Q psy6455          29 LVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGI  108 (249)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  108 (249)
                      .+..+.+..+...++....++.+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++++.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            34556667777888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccc
Q psy6455         109 ASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFL  188 (249)
Q Consensus       109 ~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~  188 (249)
                      ++.++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++++....+|..++|.+++++.           +
T Consensus        83 ~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-----------~  151 (485)
T TIGR00711        83 LCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII-----------E  151 (485)
T ss_pred             HHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc-----------c
Confidence            99999999999999999999999999999999999999999999999999999999999999999987           4


Q ss_pred             cchhHHHHHHHHHHHHHHHHHh-hcccCC
Q psy6455         189 YSSWNLFVTLVSVPSILLALWL-TRFPES  216 (249)
Q Consensus       189 ~~~w~~~~~~~~~~~~~~~~~~-~~~~~~  216 (249)
                      ..+||+.|++.+.+.++..++. ++.||+
T Consensus       152 ~~~w~~~f~~~~~~~~~~~~~~~~~~~~~  180 (485)
T TIGR00711       152 NYHWRWIFLINVPIGIIVVVVAFFILPRD  180 (485)
T ss_pred             CcCceehhhhhhHHHHHHHHHHHHHcCCc
Confidence            4699999999887777666553 335554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.89  E-value=5.1e-22  Score=165.92  Aligned_cols=176  Identities=15%  Similarity=0.081  Sum_probs=154.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHH
Q psy6455          31 IFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIAS  110 (249)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  110 (249)
                      ....+..+..+.......+.+|.+.+++|.+..+.+++.+.+.++..++++++|+++||+|||+++..+.++.+++.+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~   85 (382)
T PRK10091          6 LSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMF   85 (382)
T ss_pred             HHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence            34445556666677788889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccc
Q psy6455         111 SVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYS  190 (249)
Q Consensus       111 ~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~  190 (249)
                      .++++++.+++.|++.|++.+...+....++.|++|+++|+++++++..+..+|..++|.+++++.           +..
T Consensus        86 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~-----------~~~  154 (382)
T PRK10091         86 TLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS-----------QEF  154 (382)
T ss_pred             HHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh-----------hhc
Confidence            999999999999999999999888888889999999999999999999999999999999999886           446


Q ss_pred             hhHHHHHHHHHHHHHHHHH-hhcccCCh
Q psy6455         191 SWNLFVTLVSVPSILLALW-LTRFPESP  217 (249)
Q Consensus       191 ~w~~~~~~~~~~~~~~~~~-~~~~~~~~  217 (249)
                      +||+.|.+.+++.++..+. ..++||.+
T Consensus       155 gwr~~f~~~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        155 SWRYTFLLIAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            8999999988877666554 34467653

>KOG1330|consensus

Probab=99.89  E-value=3.5e-24  Score=174.75  Aligned_cols=182  Identities=19%  Similarity=0.180  Sum_probs=167.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHH
Q psy6455          26 HYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL  105 (249)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i  105 (249)
                      .++...+.++.+.....+.+.+....+.+++.+|++++..|++.+.+.+.+++++|+.|+++||+.||+++.+|..++.+
T Consensus        31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~  110 (493)
T KOG1330|consen   31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTL  110 (493)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHH
Confidence            34566777888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCc
Q psy6455         106 CGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETP  185 (249)
Q Consensus       106 ~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~  185 (249)
                      +.+.++++..+|++.++|.+.|+|.+...+..+++++|.+|.++|++++++++++..+|..+|.+++..+.+..      
T Consensus       111 Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~------  184 (493)
T KOG1330|consen  111 AVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT------  184 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc------
Confidence            99999999999999999999999999999999999999999999999999999999999999999998887543      


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhhcc-cCCh
Q psy6455         186 YFLYSSWNLFVTLVSVPSILLALWLTRF-PESP  217 (249)
Q Consensus       186 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~~  217 (249)
                          ..|||.|...+++.+++.++.+++ +|++
T Consensus       185 ----~~Wr~af~~~avl~vi~~~L~~~f~~eP~  213 (493)
T KOG1330|consen  185 ----FWWRWAFRGSAVLGVIVGLLVFLFVREPE  213 (493)
T ss_pred             ----cceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence                349999999999999998886654 5543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.89  E-value=1.6e-22  Score=168.59  Aligned_cols=168  Identities=21%  Similarity=0.259  Sum_probs=150.0

Q ss_pred             HHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy6455          39 YAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGV  118 (249)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~  118 (249)
                      ....+...++...|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++..++.++++++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~   84 (399)
T TIGR00893         5 INYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVS   84 (399)
T ss_pred             HHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHH
Confidence            34456667777888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHH
Q psy6455         119 FLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTL  198 (249)
Q Consensus       119 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~  198 (249)
                      +++.|++.|++.+...+....++.|++|+++|++++++.+....+|..+++.+++.+.           +..+||+.|++
T Consensus        85 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-----------~~~~~~~~~~~  153 (399)
T TIGR00893        85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL-----------IHFSWQWAFII  153 (399)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH-----------HhCCchHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999876           44689999999


Q ss_pred             HHHHHHHHHHHhh-cccCCh
Q psy6455         199 VSVPSILLALWLT-RFPESP  217 (249)
Q Consensus       199 ~~~~~~~~~~~~~-~~~~~~  217 (249)
                      .+++.++..+..+ ..||++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~  173 (399)
T TIGR00893       154 EGVLGIIWGVLWLKFIPDPP  173 (399)
T ss_pred             HHHHHHHHHHHhhheecCCC
Confidence            8888777666544 345554

>PRK09952 shikimate transporter; Provisional

Probab=99.89  E-value=1.3e-21  Score=166.24  Aligned_cols=190  Identities=17%  Similarity=0.185  Sum_probs=149.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccc-ccccc--CCCCcchhhHH-----HHhHHHHHHHHHHHHhhhhhcchhHHHHH
Q psy6455          27 YILVIFGGLLYAYAAISITVLSFVLPS-AQCDF--GMTSSDKGWLN-----AAPMLGMVFGSYFWGCLADTQGRKITLIG   98 (249)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~s~~~~~~~~-----~~~~i~~~i~~~~~g~l~dr~Grr~~~~~   98 (249)
                      ++.+....+.++...++...++...|. +.+++  +.++. .+++.     +...++..+++++.|+++||+|||+++++
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~   99 (438)
T PRK09952         21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLML   99 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHH
Confidence            456677777888899999888887764 44444  56655 45543     34556678999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhHHH--------HHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Q psy6455          99 ALLVDGLCGIASSVAQYYG--------VFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPA  170 (249)
Q Consensus        99 ~~~~~~i~~~~~~~~~~~~--------~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  170 (249)
                      +.++.+++.++++++++++        .+++.|+++|++.|..++....++.|++|+++|++..+..+.+..+|..++..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~  179 (438)
T PRK09952        100 TVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTG  179 (438)
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998876        58889999999999999999999999999999999999999999999999887


Q ss_pred             HHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHH
Q psy6455         171 VAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFL  220 (249)
Q Consensus       171 l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (249)
                      +...+......   ......+||+.|++.+++.++........||+|++.
T Consensus       180 ~~~~l~~~~~~---~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~  226 (438)
T PRK09952        180 LVSLISMMTTD---EQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFE  226 (438)
T ss_pred             HHHHHHHhCCH---HHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence            77665422100   000236999999998877666544445578887653

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.88  E-value=1.7e-21  Score=163.41  Aligned_cols=181  Identities=16%  Similarity=0.145  Sum_probs=154.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q psy6455          27 YILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC  106 (249)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~  106 (249)
                      ++.+....+...+..+......+.+|.+.+++|.|+.+.+++.+.+.++..++.+++|+++||+|||++++.+.++..++
T Consensus         7 ~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~   86 (394)
T PRK11652          7 VNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILG   86 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence            44455555555566666677778889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc
Q psy6455         107 GIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPY  186 (249)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~  186 (249)
                      .+.+.+.++++.+++.|++.|++.+...+....+..|.+++++|+++.++.+.+..++..++|.+++.+.          
T Consensus        87 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~----------  156 (394)
T PRK11652         87 TLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT----------  156 (394)
T ss_pred             HHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence            9988888999999999999999988777777788899999999999999999999999999999999886          


Q ss_pred             cccchhHHHHHHHHHHHHHHHHH-hhcccCChh
Q psy6455         187 FLYSSWNLFVTLVSVPSILLALW-LTRFPESPK  218 (249)
Q Consensus       187 ~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~  218 (249)
                       +..+||+.|++.++..++..+. .++.||+++
T Consensus       157 -~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        157 -TLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             -hccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence             4458999999987776655444 445677543

>KOG0255|consensus

Probab=99.88  E-value=1.3e-21  Score=169.81  Aligned_cols=171  Identities=31%  Similarity=0.452  Sum_probs=154.6

Q ss_pred             cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccc
Q psy6455          56 CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLG  135 (249)
Q Consensus        56 ~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~  135 (249)
                      +.++.+.....+..+.+.+|..+|++++|+++||+|||++++++.++.+++.++.++++|++.+++.|++.|++.++...
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~  190 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT  190 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence            44666777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccC
Q psy6455         136 ICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPE  215 (249)
Q Consensus       136 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  215 (249)
                      ....++.|++++++|+.+..+ ......++.+++..++++.             .+||+.+++..++.++..+..++.||
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~-------------~~Wr~~~~~~~~~~~~~~~~~~l~~E  256 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT-------------RDWRWLFWIISIPSGLFLLLWFLPPE  256 (521)
T ss_pred             HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH-------------hhHHHHHHHHHHHHHHHHHHHHccCc
Confidence            999999999999999999999 7677777777777777775             48999999999999988888666789


Q ss_pred             ChhHHHhhCChHHHHHHHHHHHhhc
Q psy6455         216 SPKFLFECGEYDQALDILRQMFSAN  240 (249)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~  240 (249)
                      +|+|+..+++.+++.+.+++..+.+
T Consensus       257 s~rwl~~~g~~~~a~~~l~~~a~~n  281 (521)
T KOG0255|consen  257 SPRWLLSKGRIDEAIKILKKIAKLN  281 (521)
T ss_pred             ChHHHHHcCchHHHHHHHHHHHhhc
Confidence            9999999998888888888876654

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.88  E-value=9.6e-22  Score=168.31  Aligned_cols=186  Identities=13%  Similarity=0.159  Sum_probs=159.5

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccc----------------------ccCCCCcchhhHHHHhHHHHHHH
Q psy6455          22 YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQC----------------------DFGMTSSDKGWLNAAPMLGMVFG   79 (249)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~s~~~~~~~~~~~~i~~~i~   79 (249)
                      ..+.++.+..++.++......+....+...+.+.+                      +++++..+.|++.+.+.+++.++
T Consensus        13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~   92 (465)
T TIGR00894        13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII   92 (465)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence            44556677777777777778888888888877766                      78899999999999999999999


Q ss_pred             HHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHH
Q psy6455          80 SYFWGCLADTQGRKITLIGALLVDGLCGIASSVA--QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWL  157 (249)
Q Consensus        80 ~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~  157 (249)
                      +++.|+++||+|||+++..+.++..++.+++.++  .+++.+++.|+++|++.+...+....+++|++|+++|++++++.
T Consensus        93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  172 (465)
T TIGR00894        93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS  172 (465)
T ss_pred             HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence            9999999999999999999999988888776544  45778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccccccCccccc-chhHHHHHHHHHHHHHHHHHhhc-ccCChh
Q psy6455         158 EMFWTGGIIVLPAVAWLLIPLNLRIETPYFLY-SSWNLFVTLVSVPSILLALWLTR-FPESPK  218 (249)
Q Consensus       158 ~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~  218 (249)
                      +.+..+|..+++.+.+.+.           +. .+||+.|++.+++.++..+.++. .+|+|+
T Consensus       173 ~~~~~~g~~i~~~l~~~l~-----------~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~  224 (465)
T TIGR00894       173 TSGFQLGTFIFLPISGWLC-----------ESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPS  224 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----------hccCCCCeehhhhhHHHHHHHHHHHHHhcCCcc
Confidence            9999999999999999887           34 38999999998888777666544 455554

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.88  E-value=2.6e-22  Score=166.53  Aligned_cols=163  Identities=13%  Similarity=0.086  Sum_probs=141.7

Q ss_pred             HHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy6455          43 SITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLAL  122 (249)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  122 (249)
                      ..+..++..|.+.+++|+|..+.+++.+.+.++..+++++.|+++||+|||++++++.++.+++.+++.++++++.+++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (377)
T TIGR00890        18 YVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLT   97 (377)
T ss_pred             HHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHH
Q psy6455         123 RFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVP  202 (249)
Q Consensus       123 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~  202 (249)
                      |++.|++.+..++.....+.|++| ++|+++.++...+..+|..+++.+.+.+.           +..+||+.|++.+++
T Consensus        98 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~f~~~~~~  165 (377)
T TIGR00890        98 YGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVI-----------NLEGVPAAFIYMGII  165 (377)
T ss_pred             HHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHH-----------hcccHHHHHHHHHHH
Confidence            999999999888888888888887 67999999999999999887666666554           346899999999888


Q ss_pred             HHHHHHHhh-cccCCh
Q psy6455         203 SILLALWLT-RFPESP  217 (249)
Q Consensus       203 ~~~~~~~~~-~~~~~~  217 (249)
                      .++..+..+ +.++++
T Consensus       166 ~~~~~~~~~~~~~~~~  181 (377)
T TIGR00890       166 FLLVIVLGAFLIGYPP  181 (377)
T ss_pred             HHHHHHHHHHheecCc
Confidence            877766544 344433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.88  E-value=2e-21  Score=165.75  Aligned_cols=185  Identities=14%  Similarity=0.212  Sum_probs=146.3

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q psy6455          22 YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALL  101 (249)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~  101 (249)
                      .++++|..+....+............+..+|.+.++ |++..+.+++.+.+.+++.+++++.|+++||+|||++++++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~  101 (452)
T PRK11273         23 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI  101 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHH
Confidence            344455555545455555555555567778888887 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh----HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHH-HHHHHHHHHh
Q psy6455         102 VDGLCGIASSVAQ----YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGII-VLPAVAWLLI  176 (249)
Q Consensus       102 ~~~i~~~~~~~~~----~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~l~~~l~  176 (249)
                      +.+++.+.+++.+    +++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+..+|.. .+|+++..+.
T Consensus       102 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~  181 (452)
T PRK11273        102 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMA  181 (452)
T ss_pred             HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            9998888877653    6778899999999999888888888899999999999999999999888864 4555443332


Q ss_pred             cccccccCcccccchhHHHHHHHHHHHHHHHHH-hhcccCChh
Q psy6455         177 PLNLRIETPYFLYSSWNLFVTLVSVPSILLALW-LTRFPESPK  218 (249)
Q Consensus       177 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~  218 (249)
                                 ...+||+.|++.+++.++..++ .+++||+|+
T Consensus       182 -----------~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~  213 (452)
T PRK11273        182 -----------WFNDWHAALYMPAFAAILVALFAFAMMRDTPQ  213 (452)
T ss_pred             -----------HhccHHHHHHHHHHHHHHHHHHHHHHccCCHh
Confidence                       1248999999988777665444 555677664

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.88  E-value=1.9e-21  Score=160.73  Aligned_cols=168  Identities=18%  Similarity=0.045  Sum_probs=146.9

Q ss_pred             HHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhh
Q psy6455          35 LLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ  114 (249)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~  114 (249)
                      ...+...+......+.+|.+..+++.+..+.+++.+.+.++..+++++.|+++||+|||++++.+.++..++.++..+.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   85 (365)
T TIGR00900         6 AAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVA   85 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555566677777888888999999999999999999999999999999999999999999999888888887777


Q ss_pred             -----HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccc
Q psy6455         115 -----YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLY  189 (249)
Q Consensus       115 -----~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~  189 (249)
                           +++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+.           +.
T Consensus        86 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~-----------~~  154 (365)
T TIGR00900        86 LLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY-----------AT  154 (365)
T ss_pred             HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----------HH
Confidence                 89999999999999999999999999999999999999999999999999999999999987           44


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhcc
Q psy6455         190 SSWNLFVTLVSVPSILLALWLTRF  213 (249)
Q Consensus       190 ~~w~~~~~~~~~~~~~~~~~~~~~  213 (249)
                      .+||+.|++.++..++..+..+.+
T Consensus       155 ~g~~~~~~~~~~~~~~~~~~~~~~  178 (365)
T TIGR00900       155 LGIKWAIWVDAVGFAISALLIVSV  178 (365)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhc
Confidence            689999988877776665554443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.88  E-value=4.6e-21  Score=162.78  Aligned_cols=189  Identities=15%  Similarity=0.136  Sum_probs=146.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhH-HHHh-----HHHHHHHHHHHHhhhhhcchhHHHHHH
Q psy6455          26 HYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWL-NAAP-----MLGMVFGSYFWGCLADTQGRKITLIGA   99 (249)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~-----~i~~~i~~~~~g~l~dr~Grr~~~~~~   99 (249)
                      |++.....+++.+...++...+++..|.+.++++.++.+.+.. .+..     .++..+++++.|+++||+|||++++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            3456777888999999999999999999999999888776543 2222     233357899999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhHHH--------HHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q psy6455         100 LLVDGLCGIASSVAQYYG--------VFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAV  171 (249)
Q Consensus       100 ~~~~~i~~~~~~~~~~~~--------~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l  171 (249)
                      .++..++..+++++++++        .+++.|+++|++.+...+....+++|++|+++|++++++.+....+|..+++.+
T Consensus        93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~  172 (434)
T PRK15075         93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL  172 (434)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998876        468899999999999888889999999999999999999998888888888888


Q ss_pred             HHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCCh
Q psy6455         172 AWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESP  217 (249)
Q Consensus       172 ~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  217 (249)
                      ++.+.......   ..+..+||+.|++..+...+..+.....||++
T Consensus       173 g~~l~~~~~~~---~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~  215 (434)
T PRK15075        173 GYLLNQWLSPA---QMAEWGWRIPFLIGCLIVPFIFLIRRSLEETE  215 (434)
T ss_pred             HHHHHHhCCHH---HHhccchHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence            77764211000   00246899999876544333322233345554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.87  E-value=1.9e-21  Score=166.84  Aligned_cols=192  Identities=16%  Similarity=0.180  Sum_probs=152.4

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHH
Q psy6455          20 AGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGA   99 (249)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~   99 (249)
                      ...++++++.+.......+........+.+..|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~  107 (476)
T PLN00028         28 FSFARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFL  107 (476)
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            34555566666666667777777777788889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy6455         100 LLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLN  179 (249)
Q Consensus       100 ~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  179 (249)
                      .++..++.++++++++++.+++.|++.|++.+... ....+++|++|+++|++++++.+....+|..+++.+.+.+....
T Consensus       108 ~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~  186 (476)
T PLN00028        108 LMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLI  186 (476)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888999999999999999999877643 45567899999999999999988777777777766665443210


Q ss_pred             ccccCcccccchhHHHHHHHHHHHHHHHHHhhccc
Q psy6455         180 LRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFP  214 (249)
Q Consensus       180 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  214 (249)
                      ...  +..+..+||+.|++.+++.++..+..++++
T Consensus       187 ~~~--~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~  219 (476)
T PLN00028        187 KDA--GAPSFTAWRIAFFVPGLLHIIMGILVLTLG  219 (476)
T ss_pred             Hhc--CCcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            000  000124899999999988877766655543

>PRK10504 putative transporter; Provisional

Probab=99.87  E-value=2.8e-21  Score=165.71  Aligned_cols=176  Identities=16%  Similarity=0.180  Sum_probs=155.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH
Q psy6455          29 LVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGI  108 (249)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  108 (249)
                      .+..+.+..++..++...+++.+|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++..++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   90 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL   90 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            34455566777788888888999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccc
Q psy6455         109 ASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFL  188 (249)
Q Consensus       109 ~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~  188 (249)
                      .+.++++++.+++.|+++|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+++.+.           +
T Consensus        91 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~-----------~  159 (471)
T PRK10504         91 FCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV-----------E  159 (471)
T ss_pred             HHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-----------h
Confidence            88888999999999999999999999999999999999999999999999999999999999999997           4


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhc-ccC
Q psy6455         189 YSSWNLFVTLVSVPSILLALWLTR-FPE  215 (249)
Q Consensus       189 ~~~w~~~~~~~~~~~~~~~~~~~~-~~~  215 (249)
                      ..+||+.|.+......+..+.... .|+
T Consensus       160 ~~gw~~~f~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        160 YASWHWIFLINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            468999999987776666555433 344

>PRK10133 L-fucose transporter; Provisional

Probab=99.87  E-value=4.3e-21  Score=162.85  Aligned_cols=153  Identities=20%  Similarity=0.172  Sum_probs=136.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q psy6455          24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD  103 (249)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~  103 (249)
                      +.....+....+..+..++......+..|.+++++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~  101 (438)
T PRK10133         22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            33444556666777777888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH---HhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455         104 GLCGIAS---SVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI  176 (249)
Q Consensus       104 ~i~~~~~---~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~  176 (249)
                      +++.+++   .++++++.++++|+++|++.|...+..++++.|+.++++|...+++.+..+.+|..+++.++..+.
T Consensus       102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998775   457899999999999999999999999999999877777777899999999999999999987664

>PRK12382 putative transporter; Provisional

Probab=99.87  E-value=4.3e-21  Score=160.82  Aligned_cols=174  Identities=18%  Similarity=0.205  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH
Q psy6455          31 IFGGLLYAYAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA  109 (249)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  109 (249)
                      ....+..+..........+.+|. +.+++|.|..+.+++.+.+.++..++++++|+++||+|||++++.+.+...++.+.
T Consensus        18 ~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~   97 (392)
T PRK12382         18 FRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLA   97 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            33434445555556666777776 56789999999999999999999999999999999999999999988877665443


Q ss_pred             HH--------hhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy6455         110 SS--------VAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLR  181 (249)
Q Consensus       110 ~~--------~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~  181 (249)
                      ..        ..++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.     
T Consensus        98 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~-----  172 (392)
T PRK12382         98 YLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH-----  172 (392)
T ss_pred             HHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH-----
Confidence            21        13578899999999999998888888889999999999999999999999999999999999886     


Q ss_pred             ccCcccccchhHHHHHHHHHHHHHHHHHhhcccC
Q psy6455         182 IETPYFLYSSWNLFVTLVSVPSILLALWLTRFPE  215 (249)
Q Consensus       182 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  215 (249)
                            +..+|++.+.+..+..++........||
T Consensus       173 ------~~~g~~~~~~~~~~~~~~~~~~~~~~~~  200 (392)
T PRK12382        173 ------SHFGFAALALTTMVLPLLAWAFNGTVRK  200 (392)
T ss_pred             ------hccChHHHHHHHHHHHHHHHHHHHhccC
Confidence                  4458998877665554444333333344

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.87  E-value=5e-21  Score=160.42  Aligned_cols=173  Identities=23%  Similarity=0.257  Sum_probs=150.0

Q ss_pred             HHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh
Q psy6455          34 GLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA  113 (249)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~  113 (249)
                      ....+..........+.+|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+.++.+.++..++...+..+
T Consensus         9 ~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~   88 (392)
T PRK10473          9 FALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA   88 (392)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh
Confidence            33444445555566678999999999999999999999999999999999999999999999999999999999999889


Q ss_pred             hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhH
Q psy6455         114 QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWN  193 (249)
Q Consensus       114 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~  193 (249)
                      ++.+.+++.|++.|++.+...+....++.|.+|+++|+++.++.+....++..++|.+++.+.           +..+|+
T Consensus        89 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~-----------~~~g~~  157 (392)
T PRK10473         89 ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM-----------LKFPWQ  157 (392)
T ss_pred             CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hCcChH
Confidence            999999999999999988888889999999999999999999999999999999999998876           346899


Q ss_pred             HHHHHHHHHHHHHHHH-hhcccCCh
Q psy6455         194 LFVTLVSVPSILLALW-LTRFPESP  217 (249)
Q Consensus       194 ~~~~~~~~~~~~~~~~-~~~~~~~~  217 (249)
                      +.+++.+++.++..++ .+..||++
T Consensus       158 ~~~~~~~~~~~i~~~~~~~~~~~~~  182 (392)
T PRK10473        158 SLFYTMAAMGILVLLLSLFILKETR  182 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9999988777766655 44466654

>PRK11043 putative transporter; Provisional

Probab=99.87  E-value=4.6e-21  Score=161.11  Aligned_cols=170  Identities=18%  Similarity=0.220  Sum_probs=148.0

Q ss_pred             HHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHH
Q psy6455          37 YAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYY  116 (249)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~  116 (249)
                      .....+....+.+.+|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||++++.+.++..++.+.+.+++++
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~   94 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESA   94 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCH
Confidence            34444556667777888889999999999999999999999999999999999999999999999999999988899999


Q ss_pred             HHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHH
Q psy6455         117 GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFV  196 (249)
Q Consensus       117 ~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~  196 (249)
                      +.+++.|++.|++.+...+...+++.|.+|++++++..+.......++..++|.+++++.           +..+||+.|
T Consensus        95 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~-----------~~~g~~~~~  163 (401)
T PRK11043         95 AQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL-----------NHFGWQAIF  163 (401)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hcCChHHHH
Confidence            999999999999888777777888999999999999999888888999999999999987           446899999


Q ss_pred             HHHHHHHHHHHHHhhcccCCh
Q psy6455         197 TLVSVPSILLALWLTRFPESP  217 (249)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~  217 (249)
                      ++.+++.++..+..++++|++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~  184 (401)
T PRK11043        164 ATLFAITLLLILPTLRLKPSK  184 (401)
T ss_pred             HHHHHHHHHHHHHHHHcCCCC
Confidence            998888887777665565543

>KOG0569|consensus

Probab=99.87  E-value=7.3e-21  Score=159.63  Aligned_cols=168  Identities=24%  Similarity=0.320  Sum_probs=146.0

Q ss_pred             hhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHhhhccccccccccc
Q psy6455          65 KGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV---AQYYGVFLALRFINGFAVTGTLGICFPYL  141 (249)
Q Consensus        65 ~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~l~~~~~l~G~~~g~~~~~~~~~~  141 (249)
                      -+.+++.+.+|.++|+.+.|+++||+|||..+.++.++..++.+++.+   .+++++++++|++.|+..|......+.|+
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            367789999999999999999999999999999998888888776665   46899999999999999999999999999


Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHHH
Q psy6455         142 GEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLF  221 (249)
Q Consensus       142 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (249)
                      .|..|++.||....+.+.+..+|..++..++..-.-         ++...|++.+....+++++..+...++||+|++..
T Consensus       142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~il---------Gt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll  212 (485)
T KOG0569|consen  142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLL---------GTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLL  212 (485)
T ss_pred             hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhc---------CCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHH
Confidence            999999999999999999999999999766533221         14468999999999999999999999999999988


Q ss_pred             h-hCChHHHHHHHHHHHhhcC
Q psy6455         222 E-CGEYDQALDILRQMFSANT  241 (249)
Q Consensus       222 ~-~~~~~~~~~~~~~~~~~~~  241 (249)
                      . +++.++++++++.++.+++
T Consensus       213 ~~k~~~~~A~~sl~~y~G~~~  233 (485)
T KOG0569|consen  213 IKKGDEEEARKALKFYRGKED  233 (485)
T ss_pred             HHcCCHHHHHHHHHHHhCCCc
Confidence            7 6777888888887766553

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.87  E-value=3.7e-21  Score=161.56  Aligned_cols=175  Identities=17%  Similarity=0.129  Sum_probs=143.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH
Q psy6455          30 VIFGGLLYAYAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGI  108 (249)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  108 (249)
                      +....+..+..........+.+|. +.+++|.|..+.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+
T Consensus        17 ~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~   96 (399)
T PRK05122         17 IVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGL   96 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHH
Confidence            334445556666677777788886 5678999999999999999999999999999999999999999999988877766


Q ss_pred             HHHhh--------hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy6455         109 ASSVA--------QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNL  180 (249)
Q Consensus       109 ~~~~~--------~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  180 (249)
                      .+.++        .+++.+++.|++.|++.+...+....++.|++|+++|++++++.+....+|.++++.+++.+.    
T Consensus        97 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~----  172 (399)
T PRK05122         97 LYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY----  172 (399)
T ss_pred             HHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH----
Confidence            55432        256788999999999999989988899999999999999999999999999999999999887    


Q ss_pred             cccCcccccchhHHHHHHHHHHHHHHHHHhhcccC
Q psy6455         181 RIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPE  215 (249)
Q Consensus       181 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  215 (249)
                             +..+|++.+++..+..++..+.....|+
T Consensus       173 -------~~~g~~~~~~~~~~~~~~~~~~~~~~~~  200 (399)
T PRK05122        173 -------HWGGLAGLGLLIMLLALLGLLLARPRPA  200 (399)
T ss_pred             -------HcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence                   4468999888777666554444333343

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.86  E-value=4.7e-21  Score=160.67  Aligned_cols=155  Identities=14%  Similarity=0.133  Sum_probs=138.4

Q ss_pred             HHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy6455          44 ITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALR  123 (249)
Q Consensus        44 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~  123 (249)
                      ....++.+|.+.+++|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+.++++++++.++++|
T Consensus        25 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r  104 (393)
T PRK09705         25 LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSA  104 (393)
T ss_pred             hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHH
Confidence            36677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHH
Q psy6455         124 FINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPS  203 (249)
Q Consensus       124 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~  203 (249)
                      +++|++.+...+....++.+++| ++|+++++++..+..+|..+++.+++++.+..          .+||+.+.+.++..
T Consensus       105 ~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~----------~~w~~~~~~~~~~~  173 (393)
T PRK09705        105 LLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS----------ETWYQTLAWWALPA  173 (393)
T ss_pred             HHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHH
Confidence            99999999989988999999997 78999999999999999999999998876321          48999887766655


Q ss_pred             HHHHHH
Q psy6455         204 ILLALW  209 (249)
Q Consensus       204 ~~~~~~  209 (249)
                      ++..+.
T Consensus       174 ~~~~~~  179 (393)
T PRK09705        174 VVALFA  179 (393)
T ss_pred             HHHHHH
Confidence            544443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.86  E-value=3.4e-22  Score=165.96  Aligned_cols=170  Identities=16%  Similarity=0.230  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHH
Q psy6455          37 YAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYY  116 (249)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~  116 (249)
                      ++.........+...|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++++.++..++.+++.+++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~   83 (379)
T TIGR00881         4 YAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSL   83 (379)
T ss_pred             hhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhH
Confidence            44555667778888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHH-HHHHHHhcccccccCcccccchhHHH
Q psy6455         117 GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLP-AVAWLLIPLNLRIETPYFLYSSWNLF  195 (249)
Q Consensus       117 ~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~l~~~l~~~~~~~~~~~~~~~~w~~~  195 (249)
                      +.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+++ .++..+.           +..+||+.
T Consensus        84 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~  152 (379)
T TIGR00881        84 WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIA-----------ELYSWHWV  152 (379)
T ss_pred             HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHH-----------hcCCchhH
Confidence            99999999999999999999999999999999999999999999999999999 4665554           34689999


Q ss_pred             HHHHHHHHHHHHHH-hhcccCCh
Q psy6455         196 VTLVSVPSILLALW-LTRFPESP  217 (249)
Q Consensus       196 ~~~~~~~~~~~~~~-~~~~~~~~  217 (249)
                      |++.+++.++..+. .++.+|++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~  175 (379)
T TIGR00881       153 FIVPGIIAIIVSLICFLLLRDSP  175 (379)
T ss_pred             HHHHHHHHHHHHHHHheeeCCCc
Confidence            99888777666554 44456554

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.86  E-value=6.3e-21  Score=158.40  Aligned_cols=163  Identities=10%  Similarity=0.005  Sum_probs=143.6

Q ss_pred             HHHHHHhhccccccccCCCCcc-hhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy6455          43 SITVLSFVLPSAQCDFGMTSSD-KGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLA  121 (249)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~  121 (249)
                      .....+...|.+.+++|++..+ .|.+.+.+..+++++.++.|+++||+|.|+++.++.+...+..++.++++++..+.+
T Consensus        41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i  120 (511)
T TIGR00806        41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQL  120 (511)
T ss_pred             hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566778888999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHH---HH
Q psy6455         122 LRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFV---TL  198 (249)
Q Consensus       122 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~---~~  198 (249)
                      .|++.|++.|... ....++..++|+++|+++.++...+..+|.++++++++++.            ..+||+..   ++
T Consensus       121 ~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~------------s~gWr~y~~Ln~I  187 (511)
T TIGR00806       121 MEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV------------TLGWISYSTLNII  187 (511)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hcCchhHHHHHHH
Confidence            9999999999999 89999999999999999999999999999999999999853            24677643   44


Q ss_pred             HHHHHHHHHHHhhcccCChh
Q psy6455         199 VSVPSILLALWLTRFPESPK  218 (249)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~  218 (249)
                      ......++.++.+++|..++
T Consensus       188 sl~s~~~a~~~a~~LP~~~~  207 (511)
T TIGR00806       188 SLVFMTFSVFLALFLKRPKR  207 (511)
T ss_pred             HHHHHHHHHHHHHhCCCCch
Confidence            45555555666777775443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.86  E-value=4.1e-20  Score=155.53  Aligned_cols=190  Identities=14%  Similarity=0.002  Sum_probs=151.4

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q psy6455          23 GKFHYILVIFGGLLYAYAAISITVLSFVLPSAQC-DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALL  101 (249)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~  101 (249)
                      ++-.++.+....+..+........+++..+.+.+ ++|+|.++.+++.+++.+++.++.++.|++.||+|.|+++.++.+
T Consensus        29 ~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~l  108 (462)
T PRK15034         29 KHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTA  108 (462)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence            3334556677777777777788888888888766 799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh-----hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455         102 VDGLCGIASSVA-----QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI  176 (249)
Q Consensus       102 ~~~i~~~~~~~~-----~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~  176 (249)
                      +..+..+.++++     ++++.+++.|++.|++ +..++.....+++++|+++||+++++.....++|..+++++...+.
T Consensus       109 l~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i  187 (462)
T PRK15034        109 ILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI  187 (462)
T ss_pred             HHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999999988876     7999999999999998 7788999999999999999999999997667777776666655433


Q ss_pred             c-----cccc-cc-CcccccchhHHHHHHHHHHHHHHHHHhhcc
Q psy6455         177 P-----LNLR-IE-TPYFLYSSWNLFVTLVSVPSILLALWLTRF  213 (249)
Q Consensus       177 ~-----~~~~-~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  213 (249)
                      .     ..+. .. ...++..+|+.+.++..++.++..++.+++
T Consensus       188 ~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~  231 (462)
T PRK15034        188 FVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG  231 (462)
T ss_pred             HHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1     1100 00 001134568888888888777776665444

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.86  E-value=1.4e-20  Score=158.46  Aligned_cols=181  Identities=18%  Similarity=0.096  Sum_probs=152.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH
Q psy6455          30 VIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA  109 (249)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  109 (249)
                      +..++...+..++.....++.+|.+++++|++..+.+++.+.+.+++.+++++.|++.||+|||++++++.++.+++.++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l   84 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            44555667777888888889999999999999999999999999999999999999999999999999999999999877


Q ss_pred             HHh---hhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc---
Q psy6455         110 SSV---AQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE---  183 (249)
Q Consensus       110 ~~~---~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~---  183 (249)
                      +..   .++++.+++.|++.|++.|..++..++++.+..|+++|++..++.+....+|..++|.+++.+........   
T Consensus        85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~  164 (410)
T TIGR00885        85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD  164 (410)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            543   35789999999999999999999999999999999999999999999999999999999988853210000   


Q ss_pred             ------------CcccccchhHHHHHHHHHHHHHHHHHh
Q psy6455         184 ------------TPYFLYSSWNLFVTLVSVPSILLALWL  210 (249)
Q Consensus       184 ------------~~~~~~~~w~~~~~~~~~~~~~~~~~~  210 (249)
                                  ....+..+||++|.+.+++.++..++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        000123479999998888777665554

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.86  E-value=5.4e-21  Score=162.50  Aligned_cols=182  Identities=14%  Similarity=0.242  Sum_probs=147.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHH
Q psy6455          26 HYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL  105 (249)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i  105 (249)
                      ++..+....+.+..............|.+.+ .|+++++.+++.+.+.++..+++++.|+++||+|||++++.+.++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~  103 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA  103 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence            4555555555555555555556667777765 599999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHhh----hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy6455         106 CGIASSVA----QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLR  181 (249)
Q Consensus       106 ~~~~~~~~----~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~  181 (249)
                      +.+.+.+.    ++++.+.+.|++.|++.+..++.....+.|++|+++|++++++++....+|..+++.+.+....    
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~----  179 (438)
T TIGR00712       104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA----  179 (438)
T ss_pred             HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH----
Confidence            88776654    4677788899999999998888888999999999999999999999999999999887765442    


Q ss_pred             ccCcccccchhHHHHHHHHHHHHHHHHH-hhcccCChh
Q psy6455         182 IETPYFLYSSWNLFVTLVSVPSILLALW-LTRFPESPK  218 (249)
Q Consensus       182 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~  218 (249)
                            +..+||..|++.+++.++..+. .+++||+|+
T Consensus       180 ------~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~  211 (438)
T TIGR00712       180 ------WFNDWHAALYFPAICAIIVALFAFAMMRDTPQ  211 (438)
T ss_pred             ------HhhhhHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence                  2258999999988887776544 455677654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.85  E-value=1.1e-20  Score=157.35  Aligned_cols=164  Identities=24%  Similarity=0.436  Sum_probs=146.8

Q ss_pred             HHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy6455          43 SITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLAL  122 (249)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  122 (249)
                      ....+.+.+|.+.+++|+++.+.+++.+.+.++..++.+++|+++||+|||+++..+.++.+++.+.+.+.++++.+++.
T Consensus         6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   85 (377)
T PRK11102          6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM   85 (377)
T ss_pred             HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            34556688888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHH
Q psy6455         123 RFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVP  202 (249)
Q Consensus       123 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~  202 (249)
                      |++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.           +..+|++.|++.+++
T Consensus        86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-----------~~~~~~~~~~~~~~~  154 (377)
T PRK11102         86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL-----------VWFSWHAIFWVLALA  154 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHcChHHHHHHHHHH
Confidence            999999999888889999999999999999999999999999999999999887           445899999988887


Q ss_pred             HHHHHHH-hhcccCCh
Q psy6455         203 SILLALW-LTRFPESP  217 (249)
Q Consensus       203 ~~~~~~~-~~~~~~~~  217 (249)
                      .++..++ .++.||++
T Consensus       155 ~~~~~~~~~~~~~~~~  170 (377)
T PRK11102        155 AILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHHHHhCCccC
Confidence            7776555 44566653

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.85  E-value=2.1e-20  Score=154.97  Aligned_cols=184  Identities=21%  Similarity=0.195  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHH
Q psy6455          32 FGGLLYAYAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIAS  110 (249)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  110 (249)
                      ..++..+..........+..|. +.+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+.++++.++..++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~   84 (366)
T TIGR00886         5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA   84 (366)
T ss_pred             HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            3445555556667778888995 889999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhh-HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccc
Q psy6455         111 SVAQ-YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLY  189 (249)
Q Consensus       111 ~~~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~  189 (249)
                      .+++ +++.+++.|++.|++.+ ..+...+++.|++|+++|+++.++......+|..+++.+++.+........ +..+.
T Consensus        85 ~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~-~~~~~  162 (366)
T TIGR00886        85 GLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGA-GLPAH  162 (366)
T ss_pred             HHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc-ccccc
Confidence            9999 99999999999999855 456678899999999999999999987777888877777766643110000 00023


Q ss_pred             chhHHHH-HHHHHHHHHHHHH-hhcccCCh
Q psy6455         190 SSWNLFV-TLVSVPSILLALW-LTRFPESP  217 (249)
Q Consensus       190 ~~w~~~~-~~~~~~~~~~~~~-~~~~~~~~  217 (249)
                      .+||+.+ ...+++..+..++ ....+|+|
T Consensus       163 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (366)
T TIGR00886       163 LAWGWAFVIVPAGILLLPALLIFFVGADTP  192 (366)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhcccCC
Confidence            4799988 4434444443333 34445544

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.85  E-value=3.7e-20  Score=155.23  Aligned_cols=168  Identities=15%  Similarity=0.074  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhH
Q psy6455          36 LYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQY  115 (249)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~  115 (249)
                      ..+...+.........+.+.+++|.+..+.+++.+.+.+++.++++++|+++||+|||++++++.++.+++.+.+.+..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~   90 (393)
T PRK11195         11 AQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH   90 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            33444443333444444556889989899999999999999999999999999999999999999999988887776665


Q ss_pred             HHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHH
Q psy6455         116 YGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLF  195 (249)
Q Consensus       116 ~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~  195 (249)
                      .   ++.|+++|++.+...|...+++.|++|+++|+++.++.+....+|.++||.+++++.+            ..|+..
T Consensus        91 ~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~------------~~~~~~  155 (393)
T PRK11195         91 P---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD------------PHAEAA  155 (393)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH
Confidence            4   6789999999999999999999999999999999999999999999999999999962            247777


Q ss_pred             HHHHHHHHHHHHHHhhcccCChh
Q psy6455         196 VTLVSVPSILLALWLTRFPESPK  218 (249)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~  218 (249)
                      +.+.+...++..+..+.+||+++
T Consensus       156 ~~i~~~~~~~~~~~~~~l~~~~~  178 (393)
T PRK11195        156 LAVCALIYLLAALFNLFIPRLGA  178 (393)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcc
Confidence            76666555555555556777643

>KOG0253|consensus

Probab=99.85  E-value=3.9e-20  Score=147.13  Aligned_cols=218  Identities=27%  Similarity=0.496  Sum_probs=195.4

Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcch
Q psy6455          13 FENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGR   92 (249)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Gr   92 (249)
                      .++......+.+++|.........++...+-....+.+.|...+..|.+.-+..++......++.+++..+|..+|++||
T Consensus        63 v~ea~~aigfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~gr  142 (528)
T KOG0253|consen   63 VDEAMNAIGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGR  142 (528)
T ss_pred             ehhhhhhcCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhc
Confidence            34556667788999999999999998888877777888888888899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy6455          93 KITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVA  172 (249)
Q Consensus        93 r~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~  172 (249)
                      |+.+..+.....+...+...++|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.+....++
T Consensus       143 r~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~la  220 (528)
T KOG0253|consen  143 RKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLA  220 (528)
T ss_pred             chhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998 888889999999999998877777 88999999999998


Q ss_pred             HHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHHHhhCChHHHHHHHHHHHhhcCCC
Q psy6455         173 WLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMFSANTGK  243 (249)
Q Consensus       173 ~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (249)
                      ....           ...||||.......+..+.++..+++||+|++...++++.++.+.++++.+.|+..
T Consensus       221 w~vm-----------~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~q  280 (528)
T KOG0253|consen  221 WGVM-----------SNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQ  280 (528)
T ss_pred             HHHH-----------HhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCC
Confidence            8877           44599999988888888888889999999999999999999999999998887754

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.85  E-value=3.8e-24  Score=182.42  Aligned_cols=194  Identities=24%  Similarity=0.399  Sum_probs=160.8

Q ss_pred             HHHHHHHHHHHHHhhccccc--cccCCCC---------cchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH
Q psy6455          36 LYAYAAISITVLSFVLPSAQ--CDFGMTS---------SDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDG  104 (249)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~--~~~~~s~---------~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~  104 (249)
                      +.+..+++...++...+...  .+++.+.         .+.++..+...+|..+|+++.|+++||+|||+.++++.++..
T Consensus         8 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~   87 (451)
T PF00083_consen    8 GGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMI   87 (451)
T ss_pred             HHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccccc
Confidence            33556666666655544433  2222222         246789999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhh---HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy6455         105 LCGIASSVAQ---YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLR  181 (249)
Q Consensus       105 i~~~~~~~~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~  181 (249)
                      ++.++..+++   +++.+.++|++.|++.|+..+....++.|..|+++|++..++.+..+.+|..++..++..+.+..  
T Consensus        88 i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~--  165 (451)
T PF00083_consen   88 IGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS--  165 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence            9999999999   99999999999999999999999999999999999999999999999999998888765553222  


Q ss_pred             ccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHHHhhCChHHHHHHHHHHH
Q psy6455         182 IETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQMF  237 (249)
Q Consensus       182 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (249)
                            +...||..+.+.+++.++..+..+++||+|+|...+++.+++++.+++..
T Consensus       166 ------~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~  215 (451)
T PF00083_consen  166 ------DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLR  215 (451)
T ss_pred             ------ccccccccccccccccccccccccccccccceeccccccccccccccccc
Confidence                  23569999999999998888888889999999988888888777776643

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.85  E-value=7.6e-20  Score=153.89  Aligned_cols=173  Identities=22%  Similarity=0.181  Sum_probs=145.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhccccccccCCCCcc-----hhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q psy6455          32 FGGLLYAYAAISITVLSFVLPSAQCDFGMTSSD-----KGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC  106 (249)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~  106 (249)
                      ...+..++.........+++|.+.+++|.+..+     .+++.+.+.++..++.++.|+++||+|||++++.+.++.+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   97 (408)
T PRK09874         18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIV   97 (408)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHH
Confidence            334455556667777888899998999988665     388899999999999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc
Q psy6455         107 GIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPY  186 (249)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~  186 (249)
                      .+++.+.++++.+++.|++.|++.+ ..+....++.|.+|+++|+++.++.+....+|..++|.+++.+.          
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----------  166 (408)
T PRK09874         98 MVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLA----------  166 (408)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence            8888888999999999999999754 46777788899999999999999999999999999999999886          


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHh-hcccCC
Q psy6455         187 FLYSSWNLFVTLVSVPSILLALWL-TRFPES  216 (249)
Q Consensus       187 ~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~  216 (249)
                       +..+||+.|++.+++.++..+.. ++.+|+
T Consensus       167 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        167 -DSYGLRPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             -HHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence             44589999999888777666553 335554

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.84  E-value=1.5e-20  Score=165.63  Aligned_cols=186  Identities=14%  Similarity=0.173  Sum_probs=154.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHH
Q psy6455          31 IFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIAS  110 (249)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  110 (249)
                      +...+..+.........+..++.++++++++..+.|++.+.+.++++++.++.+++.||+|||+.+.++.++.+++.+++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~  115 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL  115 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence            34444566666677888899999999999999999999999999999999999999999999999999999999999988


Q ss_pred             Hhhh---------------------------------------------------HHHHHHHHHHHHHhhhccccccccc
Q psy6455         111 SVAQ---------------------------------------------------YYGVFLALRFINGFAVTGTLGICFP  139 (249)
Q Consensus       111 ~~~~---------------------------------------------------~~~~l~~~~~l~G~~~g~~~~~~~~  139 (249)
                      ++.+                                                   .+..++++|+++|+|.+..++...+
T Consensus       116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~  195 (633)
T TIGR00805       116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS  195 (633)
T ss_pred             hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence            7653                                                   2456789999999999999999999


Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-----------cCcccccchhHHHHHHHHHHHHHHHH
Q psy6455         140 YLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRI-----------ETPYFLYSSWNLFVTLVSVPSILLAL  208 (249)
Q Consensus       140 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~-----------~~~~~~~~~w~~~~~~~~~~~~~~~~  208 (249)
                      ++.|++|+++|+..+++++....+|.++|+++++++.+.....           +.+......|+..|++.+++.++..+
T Consensus       196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v  275 (633)
T TIGR00805       196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI  275 (633)
T ss_pred             hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999987543100           00101112488889998888888777


Q ss_pred             HhhcccCC
Q psy6455         209 WLTRFPES  216 (249)
Q Consensus       209 ~~~~~~~~  216 (249)
                      .++++|++
T Consensus       276 ~l~~~p~~  283 (633)
T TIGR00805       276 PFFFFPKA  283 (633)
T ss_pred             HHHhCccc
Confidence            66666654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10054 putative transporter; Provisional

Probab=99.84  E-value=7.3e-20  Score=153.55  Aligned_cols=170  Identities=15%  Similarity=0.074  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHHHHHhhccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh
Q psy6455          35 LLYAYAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA  113 (249)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~  113 (249)
                      ...++.........+++|. +.+++|++..+.+++.+.+.++..+++++.|+++||+|||++++++.++..++.+...+.
T Consensus        14 ~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~   93 (395)
T PRK10054         14 ASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV   93 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH
Confidence            3444445555666665554 556799999999999999999999999999999999999999999999999998888899


Q ss_pred             hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhH
Q psy6455         114 QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWN  193 (249)
Q Consensus       114 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~  193 (249)
                      ++++.+++.+++.|.+.+...+...++..|..|+++|+++.++.+...++|..++|.+++++.           + .+|+
T Consensus        94 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~-----------~-~g~~  161 (395)
T PRK10054         94 NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV-----------M-QSIN  161 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H-hccC
Confidence            999988888988888777777888899999999999999999999999999999999999885           2 4799


Q ss_pred             HHHHHHHHHHHHHHHHh-hcccCC
Q psy6455         194 LFVTLVSVPSILLALWL-TRFPES  216 (249)
Q Consensus       194 ~~~~~~~~~~~~~~~~~-~~~~~~  216 (249)
                      ..|.+.++..++..+.. +++||+
T Consensus       162 ~~f~~~~~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        162 LPFWLAAICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99998887777765543 335544

>PTZ00207 hypothetical protein; Provisional

Probab=99.83  E-value=1.6e-19  Score=155.94  Aligned_cols=173  Identities=8%  Similarity=0.050  Sum_probs=137.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q psy6455          24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD  103 (249)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~  103 (249)
                      .++|..+....+...+.+ ..+.++.+.+.+.+++|+|..+.+++.+.. .....++++.|+++||+|+|++++++.++.
T Consensus        24 ~~Rw~~lva~~~~~~~~g-~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~  101 (591)
T PTZ00207         24 PRRFALLVLGAFCSICTS-FMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVF  101 (591)
T ss_pred             cchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            344555554444444433 345667778889999999999999988774 345567888999999999999999999999


Q ss_pred             HHHHHHHHhh------hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q psy6455         104 GLCGIASSVA------QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIV-LPAVAWLLI  176 (249)
Q Consensus       104 ~i~~~~~~~~------~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~l~~~l~  176 (249)
                      .++.++++++      ++++.+.+.|++.|++.+...+.....+.+++| ++||++.++.....++|+++ +++...++.
T Consensus       102 ~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        102 CLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             HHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999887      589999999999999998888888889999997 78999999999999999976 555555542


Q ss_pred             cccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455         177 PLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTR  212 (249)
Q Consensus       177 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  212 (249)
                                   .+|+..|++.+++.++..++...
T Consensus       181 -------------~~~~~~fl~l~vl~~vv~ll~~~  203 (591)
T PTZ00207        181 -------------DNTSAYFFFLMSFALVVGILAIV  203 (591)
T ss_pred             -------------HhHHHHHHHHHHHHHHHHHHHHh
Confidence                         36788888888777777665333

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.83  E-value=1.8e-19  Score=150.59  Aligned_cols=147  Identities=15%  Similarity=0.109  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH
Q psy6455          30 VIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA  109 (249)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  109 (249)
                      +.......+.........++.+|.+.+++|.|..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~   87 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG   87 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444666667788888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455         110 SSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI  176 (249)
Q Consensus       110 ~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~  176 (249)
                      +.++++++.+++.|++.|++.+...+.....+.+..++++|+++++.++....+|..++|.+++.+.
T Consensus        88 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  154 (381)
T PRK03633         88 LGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS  154 (381)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999998888887777888899999999999999999999999999999885

>KOG2532|consensus

Probab=99.83  E-value=4.8e-19  Score=149.82  Aligned_cols=154  Identities=19%  Similarity=0.301  Sum_probs=139.5

Q ss_pred             cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHhhhccc
Q psy6455          56 CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQY--YGVFLALRFINGFAVTGT  133 (249)
Q Consensus        56 ~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~--~~~l~~~~~l~G~~~g~~  133 (249)
                      .++++++.+.+++.+.++.|+.+++++.|+++||+|-|+++..+.++.+++.++..++.+  ++.+++.|+++|++.|..
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~  145 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL  145 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence            358889999999999999999999999999999999999999999999999999888754  457799999999999999


Q ss_pred             ccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhc-
Q psy6455         134 LGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTR-  212 (249)
Q Consensus       134 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-  212 (249)
                      +|....+.++|.|+++|++..++...+..+|.+++-.+++++.+..          .||+++|++.+++.++..+++++ 
T Consensus       146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~----------~GW~sifY~~g~~g~i~~~~w~~~  215 (466)
T KOG2532|consen  146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESS----------LGWPSIFYVFGIVGLIWFILWFLF  215 (466)
T ss_pred             HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC----------CCCchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998432          79999999999999988887555 


Q ss_pred             ccCChhH
Q psy6455         213 FPESPKF  219 (249)
Q Consensus       213 ~~~~~~~  219 (249)
                      ..|+|..
T Consensus       216 ~~d~P~~  222 (466)
T KOG2532|consen  216 YSDSPSK  222 (466)
T ss_pred             hcCCccc
Confidence            4666653

>KOG0252|consensus

Probab=99.83  E-value=1.5e-20  Score=153.27  Aligned_cols=199  Identities=21%  Similarity=0.313  Sum_probs=159.6

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-cC-------CCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchh
Q psy6455          22 YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCD-FG-------MTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRK   93 (249)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr   93 (249)
                      .++++...+.++..+.+.++++...++...|.+... +|       +++...+.+..+..+|..+|+++.|++.||+|||
T Consensus        35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK  114 (538)
T KOG0252|consen   35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRK  114 (538)
T ss_pred             hhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence            357778888999999999999999999888776443 22       4455678999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHH
Q psy6455          94 ITLIGALLVDGLCGIASSVAQ-------YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGII  166 (249)
Q Consensus        94 ~~~~~~~~~~~i~~~~~~~~~-------~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  166 (249)
                      +++...+++.+++++++++..       -.+++...|++.|+|.|+.+|...+..+|....+.||...+..-....+|..
T Consensus       115 ~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil  194 (538)
T KOG0252|consen  115 KVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGIL  194 (538)
T ss_pred             hhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence            999999999999998777642       2578899999999999999999999999999999999999976655566666


Q ss_pred             HHHHHHHHHhcccc----cccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHH
Q psy6455         167 VLPAVAWLLIPLNL----RIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFL  220 (249)
Q Consensus       167 ~~~~l~~~l~~~~~----~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (249)
                      .|.+++..+.....    ...+...-..-||..+.+.++++++.....+.+||++++.
T Consensus       195 aG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~  252 (538)
T KOG0252|consen  195 AGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYT  252 (538)
T ss_pred             hccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHH
Confidence            65555544432221    1111112335699999999999999888888899999876

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.83  E-value=6.7e-20  Score=156.44  Aligned_cols=177  Identities=12%  Similarity=0.079  Sum_probs=145.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH
Q psy6455          25 FHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDG  104 (249)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~  104 (249)
                      ++|.++..+.+...........++.++|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++..
T Consensus        16 ~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~   95 (455)
T TIGR00892        16 WGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLAS   95 (455)
T ss_pred             cchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHH
Confidence            34555555444444333333456777888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHH-HHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy6455         105 LCGIASSVAQYYGVFLA-LRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE  183 (249)
Q Consensus       105 i~~~~~~~~~~~~~l~~-~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~  183 (249)
                      ++.++++++++++.+++ .|++.|++.+...+....++.++++ ++|+++.++.+.+..+|..++|.+++.+.       
T Consensus        96 ~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~-------  167 (455)
T TIGR00892        96 LGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLF-------  167 (455)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHH-------
Confidence            99999989999888765 5689999988766667778889986 78999999999999999999999999887       


Q ss_pred             CcccccchhHHHHHHHHHHHHHHHHHhhcc
Q psy6455         184 TPYFLYSSWNLFVTLVSVPSILLALWLTRF  213 (249)
Q Consensus       184 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  213 (249)
                          +..+||+.|++.+++.++..+..+++
T Consensus       168 ----~~~gwr~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       168 ----ESFGWRGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             ----HHhChHHHHHHHHHHHHHHHHHHHHh
Confidence                44689999999988877665554443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.83  E-value=1.3e-19  Score=148.69  Aligned_cols=168  Identities=25%  Similarity=0.328  Sum_probs=150.8

Q ss_pred             HHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh
Q psy6455          33 GGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV  112 (249)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~  112 (249)
                      ..+..+..........+..|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.++.+.++..++.+...+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~   83 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF   83 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence            33455566777778888888898999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchh
Q psy6455         113 AQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSW  192 (249)
Q Consensus       113 ~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w  192 (249)
                      .++++.+++.|++.|++.+...+...+++.|++|+++|++..++.+....+|..++|.+++.+.           +..+|
T Consensus        84 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------~~~~~  152 (352)
T cd06174          84 ASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA-----------ESLGW  152 (352)
T ss_pred             hccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH-----------HHhhH
Confidence            9999999999999999999999999999999999999999999999999999999999999997           34579


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q psy6455         193 NLFVTLVSVPSILLALWLT  211 (249)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~  211 (249)
                      ++.+++.++..++..+...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~  171 (352)
T cd06174         153 RWLFLILAILGLLLALLLL  171 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999888877766655543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.82  E-value=6.8e-19  Score=142.74  Aligned_cols=184  Identities=19%  Similarity=0.191  Sum_probs=156.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q psy6455          23 GKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV  102 (249)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~  102 (249)
                      ++.+.+.+....+........++.++++.+.+.+++|+|+.|.+++..+..+...+..++.|.+.||+|.|+...++.++
T Consensus         9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l   88 (417)
T COG2223           9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLL   88 (417)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHH
Confidence            34445566666667777777788888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh---HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy6455         103 DGLCGIASSVAQ---YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLN  179 (249)
Q Consensus       103 ~~i~~~~~~~~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  179 (249)
                      ..+-.+..+++.   +++.+++.+++.|++ |+.+++..+++++++|+|++|.+++++. ..++|..+..+++..+... 
T Consensus        89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~-  165 (417)
T COG2223          89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA-  165 (417)
T ss_pred             HHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH-
Confidence            999999888875   455999999999997 7789999999999999999999999998 7788888888888887633 


Q ss_pred             ccccCcccccch---hHHHHHHHHHHHHHHHHHhh-cccCChhH
Q psy6455         180 LRIETPYFLYSS---WNLFVTLVSVPSILLALWLT-RFPESPKF  219 (249)
Q Consensus       180 ~~~~~~~~~~~~---w~~~~~~~~~~~~~~~~~~~-~~~~~~~~  219 (249)
                                .+   |+.+..+..+..++..+..+ ...|.|++
T Consensus       166 ----------~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~  199 (417)
T COG2223         166 ----------FGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEH  199 (417)
T ss_pred             ----------HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence                      35   99998888888888766644 45666654

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.82  E-value=2e-19  Score=149.62  Aligned_cols=172  Identities=15%  Similarity=0.122  Sum_probs=138.7

Q ss_pred             HHHHHHHHHHHHHhhccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHH-HHHHHHHHHHHHHhh
Q psy6455          36 LYAYAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIG-ALLVDGLCGIASSVA  113 (249)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~i~~~~~~~~  113 (249)
                      .++...+......+.+|. +.+++|.|..+.+++.+.+.++..+.+++.|+++||+||||.++. +.++..++.+++.++
T Consensus         5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~   84 (375)
T TIGR00899         5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN   84 (375)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc
Confidence            345555666667777776 467899999999999999999999999999999999999887654 566666777788888


Q ss_pred             hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHH--HHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccch
Q psy6455         114 QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKV--LCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSS  191 (249)
Q Consensus       114 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~  191 (249)
                      ++++.+++.|++.|.+.+...+...++..|+.|+++|+..  .+.......+|.+++|.+++.+.           +..+
T Consensus        85 ~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~-----------~~~~  153 (375)
T TIGR00899        85 RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLA-----------LGFG  153 (375)
T ss_pred             chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHH-----------Hhcc
Confidence            9999999999998887777778788888898887777654  57777888999999999999987           4468


Q ss_pred             hHHHHHHHHHHHHHHHHHh-hcccCChh
Q psy6455         192 WNLFVTLVSVPSILLALWL-TRFPESPK  218 (249)
Q Consensus       192 w~~~~~~~~~~~~~~~~~~-~~~~~~~~  218 (249)
                      ||+.|++.+++.++..+.. +++||.|+
T Consensus       154 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T TIGR00899       154 FTVMFLTAALAFVLCGVLVWLFLPSYPR  181 (375)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            9999999988877766654 44677654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.82  E-value=2.1e-19  Score=154.17  Aligned_cols=174  Identities=10%  Similarity=-0.062  Sum_probs=141.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHH
Q psy6455          28 ILVIFGGLLYAYAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT-QGRKITLIGALLVDGL  105 (249)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i  105 (249)
                      +.+..+++..+...+.++.+...++. +.+++|.+..+.+++.+.+.....+..+++|+++|| +||||+++++.++.++
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~   93 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAI   93 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHH
Confidence            33444445555566666666655544 567799999999999999998888999999999999 9999999999999999


Q ss_pred             HHHHHHhhhHHHH-HHHHHHHHHhhhcccccccccccccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy6455         106 CGIASSVAQYYGV-FLALRFINGFAVTGTLGICFPYLGEFQPTA--YREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRI  182 (249)
Q Consensus       106 ~~~~~~~~~~~~~-l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~  182 (249)
                      +.+.+.++.+... +.++|+++|++.|...+...+++.|.+|++  +|..+.++++.+.++|..++|.+++++.      
T Consensus        94 g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~------  167 (489)
T PRK10207         94 GYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA------  167 (489)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH------
Confidence            9999988765443 558899999999999999999999999887  4577899999999999999999999997      


Q ss_pred             cCcccccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455         183 ETPYFLYSSWNLFVTLVSVPSILLALWLTR  212 (249)
Q Consensus       183 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  212 (249)
                           +..|||+.|++.++..++..+.+..
T Consensus       168 -----~~~gw~~~F~i~~i~~~~~~~~~~~  192 (489)
T PRK10207        168 -----DKFGYSVTYNLCGAGLIIALLVYFA  192 (489)
T ss_pred             -----HhhChHHHHHHHHHHHHHHHHHHHH
Confidence                 4468999999876544444433333

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.82  E-value=5.4e-19  Score=148.52  Aligned_cols=161  Identities=14%  Similarity=0.063  Sum_probs=139.5

Q ss_pred             HHHHHHhhcc-ccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy6455          43 SITVLSFVLP-SAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLA  121 (249)
Q Consensus        43 ~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~  121 (249)
                      ......++++ ++.+++|.|..+.|++.+...+...+.+++.|+++||+|||++++.+.++.+++.+.+.+.++++.+++
T Consensus        25 ~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~  104 (400)
T PRK11646         25 GFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWL  104 (400)
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            3344444444 456789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHH
Q psy6455         122 LRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSV  201 (249)
Q Consensus       122 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~  201 (249)
                      .|++.|++.+...+...+++.|.+|+++|+++.++.+....+|..+||.+++++.            ..+|++.|++.++
T Consensus       105 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~------------~~g~~~~f~~~~~  172 (400)
T PRK11646        105 SCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL------------QYDFRLVCATGAV  172 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhhHHHHHHHHHH
Confidence            9999999988888888899999999999999999999999999999999999985            2589999998887


Q ss_pred             HHHHHHHH-hhcccC
Q psy6455         202 PSILLALW-LTRFPE  215 (249)
Q Consensus       202 ~~~~~~~~-~~~~~~  215 (249)
                      ..++..++ .++.||
T Consensus       173 ~~~~~~i~~~~~~~~  187 (400)
T PRK11646        173 LFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHHHHHHHhCCc
Confidence            77666544 334454

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.82  E-value=4.9e-19  Score=152.57  Aligned_cols=188  Identities=16%  Similarity=0.128  Sum_probs=137.4

Q ss_pred             HHHHHHHHHhhccccc-cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH-H--HhhhH
Q psy6455          40 AAISITVLSFVLPSAQ-CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA-S--SVAQY  115 (249)
Q Consensus        40 ~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~-~--~~~~~  115 (249)
                      .....+....++|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||++++++.++..++... .  ..+++
T Consensus       262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  341 (490)
T PRK10642        262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNV  341 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3344555556667655 567888888888888889999999999999999999999988877654433322 1  22345


Q ss_pred             HHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHH
Q psy6455         116 YGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLF  195 (249)
Q Consensus       116 ~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~  195 (249)
                      ...+++++++.|++.+...+....++.|.+|++.|++++++.+....+++.++|.+.+++.+..          .+|+.+
T Consensus       342 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~----------~~~~~~  411 (490)
T PRK10642        342 IGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST----------QNLMMP  411 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCchHH
Confidence            6677788888888777767777788899999999999999744334556678888888886322          356777


Q ss_pred             HHHHHHHHHHHHHHhhcccCChhHHHhh-----CChHHHHHHHHHHH
Q psy6455         196 VTLVSVPSILLALWLTRFPESPKFLFEC-----GEYDQALDILRQMF  237 (249)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  237 (249)
                      +++..+++++..+..+++||+|++..++     ++.+|+++.+++++
T Consensus       412 ~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~  458 (490)
T PRK10642        412 AYYLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHY  458 (490)
T ss_pred             HHHHHHHHHHHHHHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence            7777777777777777789998876543     56667776666553

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.82  E-value=3.1e-19  Score=152.88  Aligned_cols=171  Identities=12%  Similarity=-0.023  Sum_probs=144.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccc-cc--cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHHH
Q psy6455          31 IFGGLLYAYAAISITVLSFVLPSAQ-CD--FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT-QGRKITLIGALLVDGLC  106 (249)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~  106 (249)
                      ..+.+..++..+..+.+.+.+|.+. ++  +|++..+.+++.+.+.++..++++++|+++|| +|||++++++.++.+++
T Consensus        13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g   92 (475)
T TIGR00924        13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLG   92 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            3444555566666666777777664 44  89999999999999999999999999999999 89999999999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccch---hHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy6455         107 GIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAY---REKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE  183 (249)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~  183 (249)
                      .++.+++++.+.+.+++++.|++.|...+...++++|++|+++   |+++.++++...++|..+||.+++++.       
T Consensus        93 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~-------  165 (475)
T TIGR00924        93 HFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA-------  165 (475)
T ss_pred             HHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH-------
Confidence            9999888888888899999999999989999999999998754   888999999999999999999999997       


Q ss_pred             CcccccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455         184 TPYFLYSSWNLFVTLVSVPSILLALWLTR  212 (249)
Q Consensus       184 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  212 (249)
                          +..+|++.|.+.++..++..+....
T Consensus       166 ----~~~g~~~~f~~~~~~~~~~~l~~~~  190 (475)
T TIGR00924       166 ----ENYGYHVGFNLAAVGMVIGLLTFFA  190 (475)
T ss_pred             ----HhcChHHHHHHHHHHHHHHHHHHHH
Confidence                4458999999888666555444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.82  E-value=1.4e-19  Score=152.99  Aligned_cols=168  Identities=18%  Similarity=0.107  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh-----h
Q psy6455          39 YAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV-----A  113 (249)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----~  113 (249)
                      ...+......+.+|.+.++++.+..+.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+....     .
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~  107 (417)
T PRK10489         28 ISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPE  107 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCC
Confidence            34445556677788888888889999999999999999999999999999999999999888777766554432     4


Q ss_pred             hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhH
Q psy6455         114 QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWN  193 (249)
Q Consensus       114 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~  193 (249)
                      ++++.+++.|++.|++.+...+...+++.|+.|+++|+++.++.+....+|..+||.+++.+.           +..+|+
T Consensus       108 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~-----------~~~~~~  176 (417)
T PRK10489        108 PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI-----------AAGGVA  176 (417)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH-----------HHHhhH
Confidence            578888899999999988888888899999999999999999999999999999999999987           335899


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCh
Q psy6455         194 LFVTLVSVPSILLALWLTRFPESP  217 (249)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~  217 (249)
                      +.+++.++..++..++.+.+|+++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~l~~~~  200 (417)
T PRK10489        177 WNYGLAAAGTFITLLPLLRLPALP  200 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999888887777776666677654

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.81  E-value=5.5e-19  Score=151.93  Aligned_cols=160  Identities=21%  Similarity=0.236  Sum_probs=131.3

Q ss_pred             HHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy6455          41 AISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFL  120 (249)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~  120 (249)
                      .+........++.+..++|- .....|+.+...++..+..++.|+++|.||||.+++.+.++..++.++++-++|...++
T Consensus        57 ~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~i  135 (599)
T PF06609_consen   57 YFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFI  135 (599)
T ss_pred             HHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHH
Confidence            34444445667788889985 57888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHH
Q psy6455         121 ALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVS  200 (249)
Q Consensus       121 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~  200 (249)
                      ++..+.|+|.|.... ....++|+.|.+.|..+..+...........++.++..+.           .+.+|||.|++.+
T Consensus       136 ag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~-----------~~~~WRw~~~~~~  203 (599)
T PF06609_consen  136 AGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA-----------AHSGWRWIFYIFI  203 (599)
T ss_pred             HHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc-----------cCCCcchHHHHHH
Confidence            999999999777654 4556899999999988887766655555556777776654           3469999999998


Q ss_pred             HHHHHHHHHhhcc
Q psy6455         201 VPSILLALWLTRF  213 (249)
Q Consensus       201 ~~~~~~~~~~~~~  213 (249)
                      +...+.++..+++
T Consensus       204 i~~~i~~vl~~~f  216 (599)
T PF06609_consen  204 IWSGIALVLIFFF  216 (599)
T ss_pred             HHHHHHHHHHHHH
Confidence            8877776664443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00897 2A0118 polyol permease family

Probab=99.81  E-value=1.2e-18  Score=146.50  Aligned_cols=130  Identities=13%  Similarity=0.067  Sum_probs=112.1

Q ss_pred             HHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH---h-hhHHHHHHHH
Q psy6455          47 LSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS---V-AQYYGVFLAL  122 (249)
Q Consensus        47 ~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~-~~~~~~l~~~  122 (249)
                      ...+++.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+++.   . .++++.+++.
T Consensus        32 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  111 (402)
T TIGR00897        32 EQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLF  111 (402)
T ss_pred             HHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHH
Confidence            33445556688999999999999999999999999999999999999999999999888866542   3 2578888899


Q ss_pred             HHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHh
Q psy6455         123 RFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGI-IVLPAVAWLLI  176 (249)
Q Consensus       123 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~l~~~l~  176 (249)
                      |++.|++.+...+....++.+.+|+++|++++|+.+....+|. .++|.+++.+.
T Consensus       112 ~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~  166 (402)
T TIGR00897       112 YGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI  166 (402)
T ss_pred             HHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999998887777777888899999999999999999999996 57899888876

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG2615|consensus

Probab=99.80  E-value=2.5e-19  Score=143.07  Aligned_cols=119  Identities=22%  Similarity=0.370  Sum_probs=109.6

Q ss_pred             cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccc
Q psy6455          58 FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGIC  137 (249)
Q Consensus        58 ~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~  137 (249)
                      .+.+....|.+.+.+++...+.++.+|.++||+|||.++++|++..++...+.+.++|+..++++|++.|+.-| ...+.
T Consensus        63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~  141 (451)
T KOG2615|consen   63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVI  141 (451)
T ss_pred             ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHH
Confidence            44456678999999999999999999999999999999999999999999999999999777788999999865 56778


Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455         138 FPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP  177 (249)
Q Consensus       138 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~  177 (249)
                      -++++|.+++++|+.+++..+..+++|.++||++++++..
T Consensus       142 rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  142 RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            8999999999999999999999999999999999999975

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.80  E-value=1.9e-18  Score=144.25  Aligned_cols=177  Identities=21%  Similarity=0.277  Sum_probs=133.3

Q ss_pred             HHHHHHHHHhhccccccccC--CCCcchhhHHHH-----hHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh
Q psy6455          40 AAISITVLSFVLPSAQCDFG--MTSSDKGWLNAA-----PMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV  112 (249)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~-----~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~  112 (249)
                      +.++...+++..+.+.+++.  .++.+.+.+.+.     ..++..+++++.|+++||+|||++++.+.++..++.+++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~   84 (394)
T TIGR00883         5 EWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGL   84 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence            34455555655555555533  444555554433     33344578999999999999999999999999999999988


Q ss_pred             hhHHH--------HHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q psy6455         113 AQYYG--------VFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIET  184 (249)
Q Consensus       113 ~~~~~--------~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~  184 (249)
                      +++++        .+++.|+++|++.+...+....++.|++|+++|++..++.+.+..+|..+++.++..+......   
T Consensus        85 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~---  161 (394)
T TIGR00883        85 LPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGD---  161 (394)
T ss_pred             CCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH---
Confidence            87754        4788999999999999999999999999999999999999999999999999887766421100   


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhcccCChhH
Q psy6455         185 PYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKF  219 (249)
Q Consensus       185 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (249)
                      ...+..+||+.|++.+++.++..+.....+|+++.
T Consensus       162 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (394)
T TIGR00883       162 DALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVF  196 (394)
T ss_pred             HHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhH
Confidence            00023689999998887777666655566776543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG2533|consensus

Probab=99.79  E-value=5.1e-18  Score=144.09  Aligned_cols=164  Identities=20%  Similarity=0.254  Sum_probs=143.5

Q ss_pred             hccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy6455          50 VLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFA  129 (249)
Q Consensus        50 ~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~  129 (249)
                      .+..+.+|.+....+.+.+.++++++++++.++++.|.||++..+.+....++..+..++.....|++.+++.|++.|+.
T Consensus        68 ~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~  147 (495)
T KOG2533|consen   68 SLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLF  147 (495)
T ss_pred             HHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            33346688899999999999999999999999999999999988888888888887777777789999999999999999


Q ss_pred             hcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH
Q psy6455         130 VTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW  209 (249)
Q Consensus       130 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  209 (249)
                      ++...|....++..++.+++|+..++++.....+|+++|.+++..+....     +.+...||||.|++.+++.++..++
T Consensus       148 es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~-----~~~~~~gW~~~FiI~G~i~~~~gi~  222 (495)
T KOG2533|consen  148 ESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLN-----GSGGLAGWRWLFIIEGVITLVLGIV  222 (495)
T ss_pred             hcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhc-----CCCCcCCceeehhHHHHHHHHHHhe
Confidence            99999999999999999999999999999999999999999998865322     1113469999999999999888877


Q ss_pred             -hhcccCChh
Q psy6455         210 -LTRFPESPK  218 (249)
Q Consensus       210 -~~~~~~~~~  218 (249)
                       .+++|+.|.
T Consensus       223 ~f~~lp~~P~  232 (495)
T KOG2533|consen  223 VFFFLPDNPS  232 (495)
T ss_pred             EEEEecCChh
Confidence             455788876

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.77  E-value=1.9e-17  Score=142.51  Aligned_cols=176  Identities=15%  Similarity=0.098  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc-----chhHH-HHHHHHHHH
Q psy6455          31 IFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ-----GRKIT-LIGALLVDG  104 (249)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~-----Grr~~-~~~~~~~~~  104 (249)
                      .......+..+......+..+|.+.++.|.|.++++.. +.....+ ++.+++|+++||+     |||+. ++.+.+..+
T Consensus        15 ~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~   92 (491)
T PRK11010         15 AILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLL   92 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHH
Confidence            34445556667777888888999989999998898886 3333333 6899999999999     99986 557777777


Q ss_pred             HHHHHHHhh---hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy6455         105 LCGIASSVA---QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLR  181 (249)
Q Consensus       105 i~~~~~~~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~  181 (249)
                      ++...+++.   ++++.+.+.+++.|++.+...+...++..|++|+++|+++.++...+..+|.++++.++.++.+.   
T Consensus        93 ~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~---  169 (491)
T PRK11010         93 VAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR---  169 (491)
T ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence            776666664   46888888999999998888888999999999999999999999999999999999999888731   


Q ss_pred             ccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChh
Q psy6455         182 IETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPK  218 (249)
Q Consensus       182 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (249)
                             ..|||..|++.+++.++..+..++.||+++
T Consensus       170 -------~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~  199 (491)
T PRK11010        170 -------YLGWQGMYWLMAALLIPCIIATLLAPEPTD  199 (491)
T ss_pred             -------ccCHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence                   259999999999888777666666777643

>TIGR00896 CynX cyanate transporter

Probab=99.76  E-value=3.9e-18  Score=141.13  Aligned_cols=151  Identities=19%  Similarity=0.171  Sum_probs=130.0

Q ss_pred             HHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy6455          45 TVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRF  124 (249)
Q Consensus        45 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~  124 (249)
                      ...++.+|.+.+++|++.++.+++.+.+.++..+++++.|+++||+|||+++.++.++..++.+.+ ..++.+.+++.|+
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~   95 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA   95 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence            456778899999999999999999999999999999999999999999999999998888877776 6788888999999


Q ss_pred             HHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHH
Q psy6455         125 INGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSI  204 (249)
Q Consensus       125 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  204 (249)
                      +.|++.+...+.....+.|+++ ++|+++.++++....+|..+++.+.+.+.+..         ..+||+.|.+.+++.+
T Consensus        96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~---------~~~w~~~f~~~~~~~~  165 (355)
T TIGR00896        96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS---------GGHWQQALAWWALPAL  165 (355)
T ss_pred             HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHHH
Confidence            9999998888888888889886 68999999999999999999999988876321         1249998887766554


Q ss_pred             HH
Q psy6455         205 LL  206 (249)
Q Consensus       205 ~~  206 (249)
                      +.
T Consensus       166 ~~  167 (355)
T TIGR00896       166 LA  167 (355)
T ss_pred             HH
Confidence            44

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.75  E-value=5e-17  Score=136.76  Aligned_cols=173  Identities=15%  Similarity=0.059  Sum_probs=143.2

Q ss_pred             HHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc-----chhH-HHHHHHHHHHHHH
Q psy6455          34 GLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ-----GRKI-TLIGALLVDGLCG  107 (249)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~-----Grr~-~~~~~~~~~~i~~  107 (249)
                      ...++.++.........+|.+.++.|+|.+++|++......  .+..+++|+++||+     |||| .++++.++.+++.
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~   82 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI   82 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence            45567778888888899999999999999999999777765  69999999999999     8876 6778888887777


Q ss_pred             HHHHhh---hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q psy6455         108 IASSVA---QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIET  184 (249)
Q Consensus       108 ~~~~~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~  184 (249)
                      ..+.+.   .+++.+.+..++.+++.+...+...+++.|++|+++|+++.++...+..+|..+++.++..+.+.      
T Consensus        83 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~------  156 (402)
T PRK11902         83 AAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR------  156 (402)
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc------
Confidence            776665   35777777777888887888888999999999999999999999999999999999998888632      


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhcccCChh
Q psy6455         185 PYFLYSSWNLFVTLVSVPSILLALWLTRFPESPK  218 (249)
Q Consensus       185 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (249)
                          ..+||..|++.++..++..+..++.||+++
T Consensus       157 ----~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~  186 (402)
T PRK11902        157 ----VLGWGNTYLLMAGLMLAGALTTLWAPEPEV  186 (402)
T ss_pred             ----ccCHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence                148999999988887776666566676543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.75  E-value=3.6e-17  Score=145.31  Aligned_cols=140  Identities=14%  Similarity=0.128  Sum_probs=120.8

Q ss_pred             hHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccc
Q psy6455          67 WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQP  146 (249)
Q Consensus        67 ~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~  146 (249)
                      +...+..++..++.++.|+++||+|||++++++.++.+++.++..+.++...+++.+++.|++.++..+...++++|++|
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P  678 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP  678 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34566678889999999999999999999999999999999988888877778888888888888888889999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChh
Q psy6455         147 TAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPK  218 (249)
Q Consensus       147 ~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (249)
                      ++.|++++|+.+....+|.+++|.+++.+..            .+...+|++.+++.++++++.+++||+..
T Consensus       679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~------------~~~~~pf~i~a~~lll~~ll~~~LPET~~  738 (742)
T TIGR01299       679 SDKRATAFGFLNALCKAAAVLGILIFGSFVG------------ITKAAPILFASAALACGGLLALKLPDTRG  738 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hhhHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            9999999999999999999999999988752            23456788888888887777777888743

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.75  E-value=3.8e-17  Score=139.00  Aligned_cols=171  Identities=14%  Similarity=0.032  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc-chhHHHHHHHHHHHHH
Q psy6455          29 LVIFGGLLYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ-GRKITLIGALLVDGLC  106 (249)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~  106 (249)
                      .+..+++..+...+..+.+..++|.+ .+++|.+..+.+.+.+.+.....++.+++|+++||+ |||++++++.++.+++
T Consensus        10 ~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg   89 (493)
T PRK15462         10 AIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIG   89 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence            34444455555666666676667665 456899999999999999999999999999999999 9999999999999988


Q ss_pred             HHHHHhhh-HHHHHHHHHHHHHhhhcccccccccccccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy6455         107 GIASSVAQ-YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTA--YREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE  183 (249)
Q Consensus       107 ~~~~~~~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~  183 (249)
                      .+++...+ +...+.++..+.+++.|...+...+++.|.+|++  +|.++.++++...++|+.++|.+.+++.       
T Consensus        90 ~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~-------  162 (493)
T PRK15462         90 HVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ-------  162 (493)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH-------
Confidence            77665433 2233444444555666666777788999999876  6999999999999999999999999997       


Q ss_pred             CcccccchhHHHHHHHHHHHHHHHHHh
Q psy6455         184 TPYFLYSSWNLFVTLVSVPSILLALWL  210 (249)
Q Consensus       184 ~~~~~~~~w~~~~~~~~~~~~~~~~~~  210 (249)
                          +..||++.|.+.++..+++.+..
T Consensus       163 ----~~~Gw~~~F~iaaigm~l~li~~  185 (493)
T PRK15462        163 ----EEYSWAMGFGLAAVGMIAGLVIF  185 (493)
T ss_pred             ----hhhChHHHHHHHHHHHHHHHHHH
Confidence                44689999998776655555443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.75  E-value=3.4e-17  Score=141.17  Aligned_cols=166  Identities=11%  Similarity=-0.049  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHHHHHH
Q psy6455          32 FGGLLYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT-QGRKITLIGALLVDGLCGIA  109 (249)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~  109 (249)
                      .+++..++..+..+.+...++.+ .+++|++..+.+++.+.+........+++|+++|| +|||+.++++.++.+++..+
T Consensus        25 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l  104 (500)
T PRK09584         25 LIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYAL  104 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            34444455555555566655554 57799999999888888776666667899999999 59999999999999999888


Q ss_pred             HHhhh-HHHHHHHHHHHHHhhhcccccccccccccccccch--hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc
Q psy6455         110 SSVAQ-YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAY--REKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPY  186 (249)
Q Consensus       110 ~~~~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~  186 (249)
                      +.+++ +.+.+.+++++.|++.|...+...+++.|++|+++  |..+.++++.+.++|..++|.+++++.          
T Consensus       105 ~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~----------  174 (500)
T PRK09584        105 VAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA----------  174 (500)
T ss_pred             HHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH----------
Confidence            88764 45667788999999999888888899999998653  456788889999999999999999997          


Q ss_pred             cccchhHHHHHHHHHHHHHHHH
Q psy6455         187 FLYSSWNLFVTLVSVPSILLAL  208 (249)
Q Consensus       187 ~~~~~w~~~~~~~~~~~~~~~~  208 (249)
                       +..|||+.|.+.++..++..+
T Consensus       175 -~~~g~~~~F~i~~i~~~i~~i  195 (500)
T PRK09584        175 -AKYGWSVAFALSVVGMLITVV  195 (500)
T ss_pred             -HhhCHHHHHHHHHHHHHHHHH
Confidence             446899999988765555443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.73  E-value=5.1e-17  Score=135.80  Aligned_cols=162  Identities=9%  Similarity=-0.046  Sum_probs=125.3

Q ss_pred             HHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchh----HHHHHHHHHHHHHHHHHHhhhH
Q psy6455          40 AAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRK----ITLIGALLVDGLCGIASSVAQY  115 (249)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr----~~~~~~~~~~~i~~~~~~~~~~  115 (249)
                      .........+++|.+.+++|.|..++|++.+.+.++..++++++|+++||+|||    +.+.+..++.  ........++
T Consensus        16 ~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~   93 (382)
T PRK11128         16 YFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHS   93 (382)
T ss_pred             HHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhccc
Confidence            344567777888888899999999999999999999999999999999999984    3333222222  2223334578


Q ss_pred             HHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHH
Q psy6455         116 YGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLF  195 (249)
Q Consensus       116 ~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~  195 (249)
                      ++.+++.|++.|++.+...+...++..++  .++|+++.+.......+|..++|.+++++.           +..+||..
T Consensus        94 ~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~-----------~~~g~~~~  160 (382)
T PRK11128         94 FWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLV-----------SWFGEQAI  160 (382)
T ss_pred             HHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHH-----------HHcChhHH
Confidence            99999999999998888888877777766  356788888888888999999999999997           44699999


Q ss_pred             HHHHHHHHHHHHHHhhcccCC
Q psy6455         196 VTLVSVPSILLALWLTRFPES  216 (249)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~  216 (249)
                      |++.++..++..++.++.||.
T Consensus       161 f~~~~~~~~~~~~~~~~~~~~  181 (382)
T PRK11128        161 LWILTAGVASMLLGQLLRPTI  181 (382)
T ss_pred             HHHHHHHHHHHHHHHHccCCC
Confidence            988876655555444444543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.73  E-value=5.2e-17  Score=115.92  Aligned_cols=135  Identities=21%  Similarity=0.257  Sum_probs=119.5

Q ss_pred             HHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccccccccccccc
Q psy6455          68 LNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPT  147 (249)
Q Consensus        68 ~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~  147 (249)
                      +.+.+.++..+++++.|++.||+|||+.+..+..+..++.+.....++.+.+.+.+++.|++.+...+....++.|.+|+
T Consensus         3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   82 (141)
T TIGR00880         3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP   82 (141)
T ss_pred             EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence            44567788999999999999999999999999999999888888888999999999999999998899999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcc
Q psy6455         148 AYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRF  213 (249)
Q Consensus       148 ~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  213 (249)
                      ++|++..++.+....+|..++|.+.+.+.           +..+|++.+.+.++..++..+...++
T Consensus        83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880        83 EERGVALGLMSAGIALGPLLGPPLGGVLA-----------QFLGWRAPFLFLAILALAAFILLAFL  137 (141)
T ss_pred             hhhhHHHHHHHHhHHHHHHHhHHhHHHHh-----------cccchHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999987           44589999998888777776664443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.73  E-value=1.5e-16  Score=133.96  Aligned_cols=159  Identities=21%  Similarity=0.135  Sum_probs=130.0

Q ss_pred             HHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy6455          45 TVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRF  124 (249)
Q Consensus        45 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~  124 (249)
                      .......|.+.++.|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+.+...++.+...+.++.+.+.+..+
T Consensus       237 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (406)
T PRK11551        237 YFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGF  316 (406)
T ss_pred             HHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            33444567777788999999999999999999999999999999999999988877777777666666677777777788


Q ss_pred             HHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHH
Q psy6455         125 INGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSI  204 (249)
Q Consensus       125 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  204 (249)
                      +.|++.++..+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..          .+|...+++.....+
T Consensus       317 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~----------~~~~~~~~~~~~~~~  386 (406)
T PRK11551        317 AAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG----------RSTVGVIGASIPVIL  386 (406)
T ss_pred             HHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC----------CchHHHHHHHHHHHH
Confidence            8888877778888899999999999999999999999999999999999987432          456666766666666


Q ss_pred             HHHHHhhcc
Q psy6455         205 LLALWLTRF  213 (249)
Q Consensus       205 ~~~~~~~~~  213 (249)
                      +..++.+++
T Consensus       387 ~~~~~~~~~  395 (406)
T PRK11551        387 VAALAALLL  395 (406)
T ss_pred             HHHHHHHHH
Confidence            655554444

>KOG3764|consensus

Probab=99.72  E-value=8.1e-18  Score=135.26  Aligned_cols=146  Identities=19%  Similarity=0.218  Sum_probs=136.5

Q ss_pred             ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccc
Q psy6455          57 DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGI  136 (249)
Q Consensus        57 ~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~  136 (249)
                      +.+-+.+++|++.....+.+.+.+++.|.+.||+|+|..+++|+++...+.+++++.++++.++++|.++|+|.+...+.
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ts  179 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTS  179 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhh
Confidence            34556778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcc
Q psy6455         137 CFPYLGEFQPTAY-REKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRF  213 (249)
Q Consensus       137 ~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  213 (249)
                      ..+++++.+|++. |++++|+.-.+.++|..+||.+++.+.           +..|.+.+|++.+++.++...+.+++
T Consensus       180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilY-----------e~~Gk~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILY-----------EFAGKSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchH-----------hhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence            9999999999876 799999999999999999999999998           55699999999999999998886665

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.72  E-value=1e-16  Score=129.53  Aligned_cols=184  Identities=18%  Similarity=0.116  Sum_probs=155.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH
Q psy6455          29 LVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGI  108 (249)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  108 (249)
                      .+..+...++..++......+.+|++.+.++++..+++++...++.++.+.+++.|++.+|+|+|+-++.|+.+.+++++
T Consensus        14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~   93 (422)
T COG0738          14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAA   93 (422)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            34455566677788888888999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHH---hhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc--
Q psy6455         109 ASS---VAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE--  183 (249)
Q Consensus       109 ~~~---~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~--  183 (249)
                      +..   ...++..++++.++.|.|.+..++..++++..+.+++.....+++.+..+.+|.+++|.+++.+...+....  
T Consensus        94 lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~  173 (422)
T COG0738          94 LFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMS  173 (422)
T ss_pred             HHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccC
Confidence            874   456789999999999999999999999999999999888999999999999999999999999875320000  


Q ss_pred             ------CcccccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455         184 ------TPYFLYSSWNLFVTLVSVPSILLALWLTR  212 (249)
Q Consensus       184 ------~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  212 (249)
                            ....+...|+.+|...+...++..+....
T Consensus       174 ~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~  208 (422)
T COG0738         174 AAQILAIKGADASSVQFPYLILAGLLVLLAVLILL  208 (422)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence                  01112345888888888777777666544

>TIGR00889 2A0110 nucleoside transporter

Probab=99.72  E-value=8.6e-17  Score=135.90  Aligned_cols=149  Identities=11%  Similarity=0.008  Sum_probs=121.1

Q ss_pred             cchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHhhhcccccccc
Q psy6455          63 SDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ----YYGVFLALRFINGFAVTGTLGICF  138 (249)
Q Consensus        63 ~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~----~~~~l~~~~~l~G~~~g~~~~~~~  138 (249)
                      +..+.+.+...++..++.++.|+++||+|+|++++++.++..++........    +.+.+++.+++.|++.+...+...
T Consensus       251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~  330 (418)
T TIGR00889       251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS  330 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5668899999999999999999999999999999999998888766665532    245667789999999888888888


Q ss_pred             cccccccccchhHHHHHHHH-HHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH-hhcccCC
Q psy6455         139 PYLGEFQPTAYREKVLCWLE-MFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW-LTRFPES  216 (249)
Q Consensus       139 ~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~  216 (249)
                      .+++|.+|++.|++++++.+ ....+|..+||.+++++.+..+..     ...||+..|.+.+++.++..++ .++++|+
T Consensus       331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~-----~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAY-----GTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc-----cCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999999997 678899999999999997542000     1146999999888887777666 4445655

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.72  E-value=2e-16  Score=132.69  Aligned_cols=156  Identities=13%  Similarity=0.099  Sum_probs=126.0

Q ss_pred             Hhhccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy6455          48 SFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN  126 (249)
Q Consensus        48 ~~~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~  126 (249)
                      ....|. +.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+.+...+........++.+.+++.+++.
T Consensus       236 ~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  315 (393)
T PRK15011        236 IINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLN  315 (393)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            344554 4456899988999988888888888999999999999999988877766665555555567777777888888


Q ss_pred             HhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHH
Q psy6455         127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILL  206 (249)
Q Consensus       127 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  206 (249)
                      +++.|...+....+..|.+|+ +|+++.++++....+|..++|.+++.+.           +..+|+..+.+.+++.++.
T Consensus       316 ~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~-----------~~~g~~~~~~~~~~~~~~~  383 (393)
T PRK15011        316 AIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVA-----------EIWNYHAVFWFALVMIIAT  383 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhhhHHHHHHHHHHHHHH
Confidence            887777667777888899885 5899999998888999999999999997           4458999999888888888


Q ss_pred             HHHhhcccC
Q psy6455         207 ALWLTRFPE  215 (249)
Q Consensus       207 ~~~~~~~~~  215 (249)
                      .+..++.||
T Consensus       384 ~~~~~~~~~  392 (393)
T PRK15011        384 LFCLLRIKD  392 (393)
T ss_pred             HHHHHhhcC
Confidence            877776664

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.72  E-value=7.4e-17  Score=134.86  Aligned_cols=157  Identities=11%  Similarity=0.012  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHH----HHHHHHHHHHHHHH
Q psy6455          35 LLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITL----IGALLVDGLCGIAS  110 (249)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~----~~~~~~~~i~~~~~  110 (249)
                      +.++..........+++|.+.+++|.|..+++++.+.+.+...++++++|+++||+||++..    ..+..+..+  ..+
T Consensus        11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~   88 (382)
T TIGR00902        11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFS   88 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHH
Confidence            34444455567778889999999999999999999999999999999999999999985433    222222222  233


Q ss_pred             HhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccc
Q psy6455         111 SVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYS  190 (249)
Q Consensus       111 ~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~  190 (249)
                      ..+++++.+++.|++.|.+.+...+...++..+.  .++|++..+......++|.+++|.+++.+.           +..
T Consensus        89 ~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~-----------~~~  155 (382)
T TIGR00902        89 AGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLI-----------GMF  155 (382)
T ss_pred             HhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHH-----------HHc
Confidence            4678899999999999988888888887777654  477899999999999999999999999997           446


Q ss_pred             hhHHHHHHHHHHHHHH
Q psy6455         191 SWNLFVTLVSVPSILL  206 (249)
Q Consensus       191 ~w~~~~~~~~~~~~~~  206 (249)
                      |||..|.+.++..++.
T Consensus       156 g~~~~f~~~~~~~~~~  171 (382)
T TIGR00902       156 DEQNILAILTAGLAFM  171 (382)
T ss_pred             ChhHHHHHHHHHHHHH
Confidence            9999988876554333

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.72  E-value=9e-17  Score=132.99  Aligned_cols=167  Identities=13%  Similarity=0.075  Sum_probs=129.5

Q ss_pred             HHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc-----chhHHH-HHHHHHHHHHHHHHHhh---hH
Q psy6455          45 TVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ-----GRKITL-IGALLVDGLCGIASSVA---QY  115 (249)
Q Consensus        45 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~-----Grr~~~-~~~~~~~~i~~~~~~~~---~~  115 (249)
                      ...++.+|.+.+++|+|.++.++..+. .+...+ .+++|+++||+     ||||.+ +.+.++.++....+.+.   .+
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~   82 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD   82 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence            456677888899999999999999755 444444 99999999998     899974 56677777776666665   45


Q ss_pred             HHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHH
Q psy6455         116 YGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLF  195 (249)
Q Consensus       116 ~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~  195 (249)
                      .+.+....++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.+++.+....+.   .....++||..
T Consensus        83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~---~~~~~~~wr~~  159 (356)
T TIGR00901        83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFA---NTGLITLWGYI  159 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccc---ccccccccHHH
Confidence            666777777888888888888899999999999999999999999999999999999888643310   00123459999


Q ss_pred             HHHHHHHHHHHHHHhhc-ccCC
Q psy6455         196 VTLVSVPSILLALWLTR-FPES  216 (249)
Q Consensus       196 ~~~~~~~~~~~~~~~~~-~~~~  216 (249)
                      |++.++..++..+..++ .||+
T Consensus       160 f~i~ai~~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       160 FFWTALLILPGLLVTLFLAKEP  181 (356)
T ss_pred             HHHHHHHHHHHHHHHHHhccCC
Confidence            99998887776666544 4664

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.72  E-value=2.9e-16  Score=147.96  Aligned_cols=173  Identities=14%  Similarity=-0.019  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHhhcc-ccccccCCCC-cchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHH---HHHHHHHHHH
Q psy6455          34 GLLYAYAAISITVLSFVLP-SAQCDFGMTS-SDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIG---ALLVDGLCGI  108 (249)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~-~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~---~~~~~~i~~~  108 (249)
                      ++..+...+....+..+.. .+..+.+.+. ...++..+.+.+.+.++++++|+++||+|||+++..   +.++..+..+
T Consensus        21 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~  100 (1140)
T PRK06814         21 FFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAI  100 (1140)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence            3333433333333333332 3334444333 346888889999999999999999999999997643   2222222223


Q ss_pred             HHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccc
Q psy6455         109 ASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFL  188 (249)
Q Consensus       109 ~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~  188 (249)
                      .....++++.++++|+++|++.+...+...+++.+++++++|++++++.+++..+|.++||.+++++.           +
T Consensus       101 ~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~-----------~  169 (1140)
T PRK06814        101 YGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT-----------I  169 (1140)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH-----------h
Confidence            33344789999999999999999999999999999999999999999999999999999999999998           4


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhcccCCh
Q psy6455         189 YSSWNLFVTLVSVPSILLALWLTRFPESP  217 (249)
Q Consensus       189 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  217 (249)
                      ..+|++.|+..++..++..++.+++++++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (1140)
T PRK06814        170 SGNFVILVALLMGIAVLGWLASLFIPKTG  198 (1140)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            45899998666566666555566666543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.72  E-value=1.2e-16  Score=132.56  Aligned_cols=148  Identities=14%  Similarity=0.010  Sum_probs=124.0

Q ss_pred             hhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHH
Q psy6455          49 FVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQY--YGVFLALRFIN  126 (249)
Q Consensus        49 ~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~--~~~l~~~~~l~  126 (249)
                      ...+.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+.++.++..++.+...+.++  ...+.+..++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (377)
T TIGR00890       226 GLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV  305 (377)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Confidence            3344456778888888999999999999999999999999999999999998888888777666553  23344567788


Q ss_pred             HhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHH
Q psy6455         127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILL  206 (249)
Q Consensus       127 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  206 (249)
                      |++.+...+....++.|.+|+++|++..++.+....+|..++|.+.+.+.           +..+|++.|.+.+++.+++
T Consensus       306 g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~-----------~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHAL-----------TEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH-----------hhhchhhHHHHHHHHHHHh
Confidence            88888888888889999999999999999999999999999999999987           4468999998888777665


Q ss_pred             H
Q psy6455         207 A  207 (249)
Q Consensus       207 ~  207 (249)
                      .
T Consensus       375 ~  375 (377)
T TIGR00890       375 L  375 (377)
T ss_pred             c
Confidence            4

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.71  E-value=1.4e-16  Score=134.88  Aligned_cols=145  Identities=16%  Similarity=0.054  Sum_probs=123.6

Q ss_pred             ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccc
Q psy6455          57 DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGI  136 (249)
Q Consensus        57 ~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~  136 (249)
                      +.+.+..+.+++.+...++..++.+++|+++||+|+|+.+..+.++..++.++..++++.+.+++.+++.|++.+...+.
T Consensus       256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~  335 (420)
T PRK09528        256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG  335 (420)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            34566677899999999999999999999999999999999999988888888888888888889999999988877777


Q ss_pred             cccccccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455         137 CFPYLGEFQPTAYREKVLCW-LEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTR  212 (249)
Q Consensus       137 ~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  212 (249)
                      ...++.|.+|++.|++..+. ++....+|.+++|.+.+++.           +..||+..|.+.+++.++..++.++
T Consensus       336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~-----------~~~G~~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLY-----------DSIGFQGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHH-----------HhhCchHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999887765 67788899999999999998           4458999999888877766655433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.71  E-value=4.6e-16  Score=130.54  Aligned_cols=169  Identities=14%  Similarity=0.130  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHhhccc-cccccCCCCcchhhHHHHhHH-HHHHHHHHHHhhhhhcchhHHH-HHHHHHHHHHHHHHHhh
Q psy6455          37 YAYAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPML-GMVFGSYFWGCLADTQGRKITL-IGALLVDGLCGIASSVA  113 (249)
Q Consensus        37 ~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~i-~~~i~~~~~g~l~dr~Grr~~~-~~~~~~~~i~~~~~~~~  113 (249)
                      .+..........+.+|. +.+++|.|.++.|++.+...+ +..++.+.+++ +||+||||.+ +.+.++..++..+..++
T Consensus        24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~  102 (393)
T PRK15011         24 AFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN  102 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence            34444455555565555 567899999999999876655 55555545555 9999999875 45566666777777888


Q ss_pred             hHHHHHHHHHHHHHhhhcccccccccccccccccchh--HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccch
Q psy6455         114 QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYR--EKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSS  191 (249)
Q Consensus       114 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~  191 (249)
                      ++++.+++.+.+.|...+...+....+..|+.+++.|  +...++.+.+.++|.+++|.+++.+.           +..|
T Consensus       103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~-----------~~~g  171 (393)
T PRK15011        103 RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALA-----------MGFS  171 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHH-----------HhcC
Confidence            8888876665554444456677777888887776655  34457888899999999999999997           4469


Q ss_pred             hHHHHHHHHHHHHHHHHH-hhcccCCh
Q psy6455         192 WNLFVTLVSVPSILLALW-LTRFPESP  217 (249)
Q Consensus       192 w~~~~~~~~~~~~~~~~~-~~~~~~~~  217 (249)
                      ||..|+..++..++..+. .+++||.+
T Consensus       172 w~~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        172 FTVMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence            999999988877766655 44467654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.70  E-value=5.9e-16  Score=145.96  Aligned_cols=129  Identities=15%  Similarity=0.045  Sum_probs=109.3

Q ss_pred             hccccccccCCCC--cchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHH
Q psy6455          50 VLPSAQCDFGMTS--SDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS---VAQYYGVFLALRF  124 (249)
Q Consensus        50 ~~~~~~~~~~~s~--~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~~~~~~~l~~~~~  124 (249)
                      ..+.+..+++.+.  ...+++.+++.+++.++++++|+++||+|||++++++.++.+++.++..   ..++++.++++|+
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  111 (1146)
T PRK08633         32 IQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTF  111 (1146)
T ss_pred             HHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            3334444555543  3468999999999999999999999999999999998877665555433   3467899999999


Q ss_pred             HHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy6455         125 INGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL  178 (249)
Q Consensus       125 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~  178 (249)
                      +.|++.+...+...+++.|++|+++|++++++.+.+..+|.++|+.+++++...
T Consensus       112 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        112 LLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999998743

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.70  E-value=9.8e-16  Score=125.76  Aligned_cols=164  Identities=21%  Similarity=0.263  Sum_probs=143.6

Q ss_pred             HHHHHHHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhH-HHHHHHHHHHHHHHHHHhhhHH
Q psy6455          39 YAAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKI-TLIGALLVDGLCGIASSVAQYY  116 (249)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~-~~~~~~~~~~i~~~~~~~~~~~  116 (249)
                      .............|.+.++ +|.+..+.+++.+...++..++.++.+++.||+|||+ .+..+.++..++.+.....++.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  265 (352)
T cd06174         186 LLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL  265 (352)
T ss_pred             HHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccH
Confidence            3334444555566666655 4889999999999999999999999999999999999 9999999999999988888888


Q ss_pred             HHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHH
Q psy6455         117 GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFV  196 (249)
Q Consensus       117 ~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~  196 (249)
                      +...+..++.|++.+...+....++.|..|+++|++..++.+....+|..+++.+.+.+.           +..+|+..+
T Consensus       266 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~-----------~~~~~~~~~  334 (352)
T cd06174         266 ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL-----------DTGGYGGVF  334 (352)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------cccCcchHH
Confidence            888999999999999999999999999999999999999999999999999999999997           446899999


Q ss_pred             HHHHHHHHHHHHHhhcc
Q psy6455         197 TLVSVPSILLALWLTRF  213 (249)
Q Consensus       197 ~~~~~~~~~~~~~~~~~  213 (249)
                      .+.+++.++..+..+++
T Consensus       335 ~~~~~~~~i~~i~~~~~  351 (352)
T cd06174         335 LILAALALLAALLLLLL  351 (352)
T ss_pred             HHHHHHHHHHHHHheec
Confidence            99999888887765543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.69  E-value=1.6e-15  Score=127.51  Aligned_cols=155  Identities=14%  Similarity=0.010  Sum_probs=127.7

Q ss_pred             hhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q psy6455          49 FVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGF  128 (249)
Q Consensus        49 ~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~  128 (249)
                      .+++.+.++.|.  ...++..+.+.++..++.++.|++.||+|+|+.+..+..+..++.+...+.++.+.+++..++.|+
T Consensus       237 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~  314 (399)
T PRK05122        237 TFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGF  314 (399)
T ss_pred             HHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            334444445555  345677778888999999999999999999999999888888887777777888888888999999


Q ss_pred             hhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHH
Q psy6455         129 AVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLAL  208 (249)
Q Consensus       129 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  208 (249)
                      +.+..++.....+.|..|+++|+++.++++....+|..+++.+.+.+.           +..+|+..+++.+++.++..+
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~-----------~~~g~~~~~~~~~~~~~~~~~  383 (399)
T PRK05122        315 GFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVA-----------SWFGYPSIFLAAALAALLGLA  383 (399)
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHcCHHHHHHHHHHHHHHHHH
Confidence            988888877778889999999999999999999999999999988887           445899999998888888777


Q ss_pred             HhhcccCC
Q psy6455         209 WLTRFPES  216 (249)
Q Consensus       209 ~~~~~~~~  216 (249)
                      ..++++++
T Consensus       384 ~~~~~~~~  391 (399)
T PRK05122        384 LTWLLYRR  391 (399)
T ss_pred             HHHHhccc
Confidence            76555443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.68  E-value=3.3e-15  Score=124.26  Aligned_cols=154  Identities=15%  Similarity=0.101  Sum_probs=126.4

Q ss_pred             hcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q psy6455          50 VLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGF  128 (249)
Q Consensus        50 ~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~  128 (249)
                      ..|.+ .+++|.++.+.+++.....+...++.++.|++.||+|||+.+.++.++..+......+.++.+.+.+.+++.|+
T Consensus       221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  300 (375)
T TIGR00899       221 NMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAI  300 (375)
T ss_pred             hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34443 46689999999988888777788889999999999999999888877766665555666778878888899999


Q ss_pred             hhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHH
Q psy6455         129 AVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLAL  208 (249)
Q Consensus       129 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  208 (249)
                      +.+...+....++.|..|+ +++++.++++....+|..++|.+++.+.           +..+|+..+++.++..++..+
T Consensus       301 ~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~-----------~~~g~~~~~~~~~~~~~~~~~  368 (375)
T TIGR00899       301 FIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILA-----------ERWSYHAVYWFAIVMLIVALF  368 (375)
T ss_pred             HHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhccchhHHHHHHHHHHHHHH
Confidence            8888888888889999875 5679999999998999999999999987           445899999999888888877


Q ss_pred             HhhcccC
Q psy6455         209 WLTRFPE  215 (249)
Q Consensus       209 ~~~~~~~  215 (249)
                      ...+++|
T Consensus       369 ~~~~~~~  375 (375)
T TIGR00899       369 CLLLIKD  375 (375)
T ss_pred             HHheecC
Confidence            7665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.68  E-value=1.1e-15  Score=128.33  Aligned_cols=167  Identities=15%  Similarity=0.077  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHH---H
Q psy6455          36 LYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIAS---S  111 (249)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~  111 (249)
                      ..++.........+++|.+ .+++|.++.+.+++.+.+.++..+++++.|+++||+|||+.++.+.+..+++....   .
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~   89 (396)
T TIGR00882        10 FFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYV   89 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555666666665 45689999999999999999999999999999999999999988766665443322   1


Q ss_pred             hh-----hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc
Q psy6455         112 VA-----QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPY  186 (249)
Q Consensus       112 ~~-----~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~  186 (249)
                      +.     +......+.+++.|++.+...+....+..|..+  +++...+......++|.+++|.+++.+.          
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~----------  157 (396)
T TIGR00882        90 FGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILF----------  157 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhh----------
Confidence            11     123345667888888888777777777666533  3345667777778899999999998874          


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhhc-ccCC
Q psy6455         187 FLYSSWNLFVTLVSVPSILLALWLTR-FPES  216 (249)
Q Consensus       187 ~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~  216 (249)
                        ..+|+..|++.+++.++..++.+. .+|+
T Consensus       158 --~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  186 (396)
T TIGR00882       158 --SIDPQIVFWLGSGFALILMLLLMFAKPKA  186 (396)
T ss_pred             --ccCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence              248999999988888777665544 3443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.67  E-value=2.7e-15  Score=125.42  Aligned_cols=152  Identities=11%  Similarity=0.002  Sum_probs=131.0

Q ss_pred             HHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy6455          46 VLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFI  125 (249)
Q Consensus        46 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l  125 (249)
                      ......|.+.++.|.+..+.+++.+...++..++.++.+++.||+|+|+.+.++.+...+..+..++.++.+.+++.+++
T Consensus       223 ~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l  302 (382)
T TIGR00902       223 AYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQIL  302 (382)
T ss_pred             HHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHH
Confidence            33445555557799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccccccccccccccccchhHHHHHHHH-HHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHH
Q psy6455         126 NGFAVTGTLGICFPYLGEFQPTAYREKVLCWLE-MFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSI  204 (249)
Q Consensus       126 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  204 (249)
                      .|++.+...+....++++. |+++|++++++++ ....+|..++|.++|++.           +..++ ..|.+.+++++
T Consensus       303 ~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~-----------~~~g~-~~~~~~~~~~~  369 (382)
T TIGR00902       303 HCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIY-----------PTLGA-GTFVFMAIIAA  369 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhccH-HHHHHHHHHHH
Confidence            9999999999999999998 9999999999986 567899999999999998           34465 56777777776


Q ss_pred             HHHHHh
Q psy6455         205 LLALWL  210 (249)
Q Consensus       205 ~~~~~~  210 (249)
                      ++.++.
T Consensus       370 ~~~~~~  375 (382)
T TIGR00902       370 AAFFLI  375 (382)
T ss_pred             HHHHHH
Confidence            665544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.66  E-value=3.6e-15  Score=126.12  Aligned_cols=160  Identities=14%  Similarity=0.064  Sum_probs=131.6

Q ss_pred             HHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy6455          47 LSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFI  125 (249)
Q Consensus        47 ~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l  125 (249)
                      .....|.+.++ +|.+..+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+...+..++
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLAL  321 (417)
T ss_pred             HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            34456666666 89999999999999999999999999999999888888888888888887777778888777888889


Q ss_pred             HHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHH
Q psy6455         126 NGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSIL  205 (249)
Q Consensus       126 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  205 (249)
                      .|++.+...+...+++.|..|++.|+++.++++....+|..++|.+.+++.           +..+++..+.+.++..++
T Consensus       322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~-----------~~~g~~~~~~~~~~~~~~  390 (417)
T PRK10489        322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLG-----------AMMTPVASASASGFGLLI  390 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHH-----------HHhchhhHHHHHHHHHHH
Confidence            999888777777889999999999999999999999999999999999997           445777777777666555


Q ss_pred             HHHH-hhcccCCh
Q psy6455         206 LALW-LTRFPESP  217 (249)
Q Consensus       206 ~~~~-~~~~~~~~  217 (249)
                      ..+. ....++.+
T Consensus       391 ~~~~~~~~~~~~~  403 (417)
T PRK10489        391 IGVLLLLVLGELR  403 (417)
T ss_pred             HHHHHHHhccccc
Confidence            5444 44456543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.66  E-value=3.2e-15  Score=128.25  Aligned_cols=181  Identities=14%  Similarity=0.054  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH-
Q psy6455          32 FGGLLYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA-  109 (249)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~-  109 (249)
                      ...+..++...........+|.+ .+++|.|..+.++..+...++..++.+++|+++||+|||+.++....+..++... 
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~  341 (467)
T PRK09556        262 LLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLG  341 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHH
Confidence            33444444444444556667765 4669999999999999999999999999999999999998776654444433222 


Q ss_pred             -HHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHhcc-c-ccccCc
Q psy6455         110 -SSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTG-GIIVLPAVAWLLIPL-N-LRIETP  185 (249)
Q Consensus       110 -~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l~~~-~-~~~~~~  185 (249)
                       ....++.....+.+++.|++.............|.+|++.|+++.++.+....+ |..++|.+.|++.+. . ++... 
T Consensus       342 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~-  420 (467)
T PRK09556        342 VYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIF-  420 (467)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccc-
Confidence             223345556667788888654443333345677999999999999999888776 779999999999861 1 00000 


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhhcc
Q psy6455         186 YFLYSSWNLFVTLVSVPSILLALWLTRF  213 (249)
Q Consensus       186 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~  213 (249)
                      .....+|+..|.+.++..+++.+..+++
T Consensus       421 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        421 GYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             cccccChHHHHHHHHHHHHHHHHHHHHH
Confidence            0013579999998888877776665443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.65  E-value=2.6e-15  Score=127.09  Aligned_cols=166  Identities=13%  Similarity=0.008  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH---
Q psy6455          36 LYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS---  111 (249)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---  111 (249)
                      ..++.........+++|.+ .+++|+|..+.|++.+.+.++..++++++|+++||+|||++++++..+.+++.....   
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~   97 (420)
T PRK09528         18 FFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYV   97 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444555556554 455999999999999999999999999999999999999998887665554432211   


Q ss_pred             hhhHHH-HHHHHHHHHHhhhcccccccccccccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccc
Q psy6455         112 VAQYYG-VFLALRFINGFAVTGTLGICFPYLGEFQP--TAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFL  188 (249)
Q Consensus       112 ~~~~~~-~l~~~~~l~G~~~g~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~  188 (249)
                      ..+... ......++.++..+.........+.++.+  .++++...+.......+|..++|.+++.+.+           
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-----------  166 (420)
T PRK09528         98 FAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN-----------  166 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh-----------
Confidence            111111 01112222233333222222222333322  2456667788888889999999999998852           


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhcc
Q psy6455         189 YSSWNLFVTLVSVPSILLALWLTRF  213 (249)
Q Consensus       189 ~~~w~~~~~~~~~~~~~~~~~~~~~  213 (249)
                       .+|++.|++.+++.++..+..++.
T Consensus       167 -~~~~~~f~~~~~~~~~~~~~~~~~  190 (420)
T PRK09528        167 -INPQINFWLGSGSALILLVLLFFA  190 (420)
T ss_pred             -cCchHhHHHHHHHHHHHHHHHhcc
Confidence             378999988887777766665554

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.65  E-value=1.1e-15  Score=130.65  Aligned_cols=157  Identities=13%  Similarity=0.150  Sum_probs=123.9

Q ss_pred             HHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc--chhHHHHH--HHHHHHHHHHHHHhhhHHHH
Q psy6455          43 SITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ--GRKITLIG--ALLVDGLCGIASSVAQYYGV  118 (249)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~--Grr~~~~~--~~~~~~i~~~~~~~~~~~~~  118 (249)
                      .......++|.+.++.|.+..+.+++.+...++..+++++.|+++||.  ++|+...+  +.++..++.+++.+.++++.
T Consensus       256 ~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~  335 (455)
T TIGR00892       256 GFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTG  335 (455)
T ss_pred             HccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            333334455666677899999999999999999999999999999973  34443333  33434444555566778888


Q ss_pred             HHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHH
Q psy6455         119 FLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTL  198 (249)
Q Consensus       119 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~  198 (249)
                      +++.+++.|++.+...+...+++.|.+|++++++.+++++....+|..++|.+++.+.+..          .+|++.|++
T Consensus       336 ~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~----------g~~~~~f~~  405 (455)
T TIGR00892       336 LVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT----------KNYKYIFYA  405 (455)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc----------CCcchHHHH
Confidence            8889999999999888888999999999999999999999999999999999999887322          368899988


Q ss_pred             HHHHHHHHHHH
Q psy6455         199 VSVPSILLALW  209 (249)
Q Consensus       199 ~~~~~~~~~~~  209 (249)
                      .+++.+++.+.
T Consensus       406 ~~~~~li~~~~  416 (455)
T TIGR00892       406 SGSIVVSAGLF  416 (455)
T ss_pred             hhHHHHHHHHH
Confidence            88877666554

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.64  E-value=3.7e-15  Score=125.43  Aligned_cols=137  Identities=18%  Similarity=0.149  Sum_probs=118.7

Q ss_pred             hhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccc
Q psy6455          65 KGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEF  144 (249)
Q Consensus        65 ~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~  144 (249)
                      .+.+.+...++..++.+..|+++||+|||+.+..+.++..++.+...+.++.+.+.+.+++.|++.+...+...+.+.+.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            45566677788889999999999999999999999888887777777777888888899999999998888888888999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455         145 QPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTR  212 (249)
Q Consensus       145 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  212 (249)
                      .|+++|++..++++....+|..++|.+++.+.           +..+|+..|++.+++.++..+..++
T Consensus       340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~-----------~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS-----------ANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             CCcccceeeehHHHHHHHHHHHhhHHHHHHHH-----------hhcchhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999997           4468999999998888887776544

>PRK03545 putative arabinose transporter; Provisional

Probab=99.64  E-value=1.4e-14  Score=121.50  Aligned_cols=149  Identities=13%  Similarity=0.042  Sum_probs=119.3

Q ss_pred             ccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHhh
Q psy6455          51 LPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGI-ASSVAQYYGVFLALRFINGFA  129 (249)
Q Consensus        51 ~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~-~~~~~~~~~~l~~~~~l~G~~  129 (249)
                      .|.+.+++|.+..+.+++.+...++..+++++.|+++||+|||+..+ +..+..++.. .....++.+.+.+..++.|++
T Consensus       229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~  307 (390)
T PRK03545        229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIA  307 (390)
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            34455558999999999999999999999999999999999887544 4444444333 334566777788888899998


Q ss_pred             hcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH
Q psy6455         130 VTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW  209 (249)
Q Consensus       130 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  209 (249)
                      .+...+.....+.|..| ++|++++++++....+|..+||.+++.+.           +..+++..+.+.+++.+++++.
T Consensus       308 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~-----------~~~g~~~~~~~~~~~~~~~~~~  375 (390)
T PRK03545        308 IMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVS-----------LHLGLSSIGYVGAALALAALVW  375 (390)
T ss_pred             HhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hccChhHHHHHHHHHHHHHHHH
Confidence            77766777778888876 68899999999999999999999999998           5579999999998888887776


Q ss_pred             hhc
Q psy6455         210 LTR  212 (249)
Q Consensus       210 ~~~  212 (249)
                      ...
T Consensus       376 ~~~  378 (390)
T PRK03545        376 SIL  378 (390)
T ss_pred             HHH
Confidence            544

>PRK09952 shikimate transporter; Provisional

Probab=99.64  E-value=1.4e-14  Score=123.33  Aligned_cols=164  Identities=13%  Similarity=0.081  Sum_probs=119.8

Q ss_pred             HHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh---h-hHHHH
Q psy6455          44 ITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV---A-QYYGV  118 (249)
Q Consensus        44 ~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~-~~~~~  118 (249)
                      .+......|.+ .+++|.+......+.....+...++.++.|+++||+|||+.++.+.++.+++.+....   . ++.+.
T Consensus       266 ~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (438)
T PRK09952        266 MYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWI  345 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence            33344444444 4568888766656666667777889999999999999999988887766555433322   1 23444


Q ss_pred             HHHHHHHHHhhhcccccccccccccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHH
Q psy6455         119 FLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCW-LEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVT  197 (249)
Q Consensus       119 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~  197 (249)
                      +++..++.+++.+...+..+++++|.+|++.|+++.++ ++.+..+|+.++|.+.+++.+..         ..+|...+.
T Consensus       346 ~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~---------~~~~~~~~~  416 (438)
T PRK09952        346 VFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF---------GGSWHSVAI  416 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---------CCCchHHHH
Confidence            45566677888777788888999999999999999998 45556689999999999987432         135888888


Q ss_pred             HHHHHHHHHHHHhhcccCC
Q psy6455         198 LVSVPSILLALWLTRFPES  216 (249)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~  216 (249)
                      +.++..++..+..+.++|+
T Consensus       417 ~~~~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        417 YLLAGCLISAMTALLMKDN  435 (438)
T ss_pred             HHHHHHHHHHHHHHHcccc
Confidence            8888888887776666654

>KOG2504|consensus

Probab=99.63  E-value=6.8e-16  Score=132.26  Aligned_cols=179  Identities=16%  Similarity=0.121  Sum_probs=153.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q psy6455          24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD  103 (249)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~  103 (249)
                      -+-|.+.+..++............+.+.+.+.++++.+.++++|+.++......+..++.+.+.||+|.|.+.++|.++.
T Consensus        42 G~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~  121 (509)
T KOG2504|consen   42 GWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVA  121 (509)
T ss_pred             CeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHH
Confidence            34465555555555554444555667778889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHH-HHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy6455         104 GLCGIASSVAQYYGVFLALR-FINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRI  182 (249)
Q Consensus       104 ~i~~~~~~~~~~~~~l~~~~-~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~  182 (249)
                      .++.++.++++++|.+++.. ++.|+|.|..+....+.+..+|+ ++|+.+.++...+.++|..+-|.+..++.      
T Consensus       122 ~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~------  194 (509)
T KOG2504|consen  122 ALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLL------  194 (509)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHH------
Confidence            99999999999999888766 88899999999999999998885 78999999999999999999999999998      


Q ss_pred             cCcccccchhHHHHHHHHHHHHHHHHHhhccc
Q psy6455         183 ETPYFLYSSWNLFVTLVSVPSILLALWLTRFP  214 (249)
Q Consensus       183 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  214 (249)
                           +..|||..+++.+.+.+-.++.....+
T Consensus       195 -----~~~G~r~~~l~~~~~~l~~~~~~~~~r  221 (509)
T KOG2504|consen  195 -----SKYGWRGALLIFGGISLNVLVAGALLR  221 (509)
T ss_pred             -----HHhCcHHHHHHHHHHHHHHHHHHHHcC
Confidence                 557999999999988877777755543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.63  E-value=1.5e-14  Score=122.76  Aligned_cols=184  Identities=16%  Similarity=0.116  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhh----hcchhHHHHHH-HHHHHHHHH
Q psy6455          34 GLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD----TQGRKITLIGA-LLVDGLCGI  108 (249)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~d----r~Grr~~~~~~-~~~~~i~~~  108 (249)
                      ....+...+.+....+.++.+.+++|.+....+++..+..+...+.+++.|+++|    |+||||.++++ .+..+++..
T Consensus        10 ~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~   89 (477)
T TIGR01301        10 ASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVI   89 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHH
Confidence            3344444556666666677777889999999999999999999999999999999    59999998875 566666666


Q ss_pred             HHHhhhHHH-----------------HHHHHHHHHHhhhcccccccccccccccccchh--HHHHHHHHHHHHHHHHHHH
Q psy6455         109 ASSVAQYYG-----------------VFLALRFINGFAVTGTLGICFPYLGEFQPTAYR--EKVLCWLEMFWTGGIIVLP  169 (249)
Q Consensus       109 ~~~~~~~~~-----------------~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~  169 (249)
                      +++++++.+                 ..+++..+..++....+++..++++|.+|+++|  +.+.++.+...++|.++++
T Consensus        90 ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~  169 (477)
T TIGR01301        90 LIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGY  169 (477)
T ss_pred             HHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            666655532                 233344445567777888889999999998865  5788999999999999999


Q ss_pred             HHHHHHh--ccccc--ccCcccccchhHHHHHHHHHHHHHHHHH-hhcccCCh
Q psy6455         170 AVAWLLI--PLNLR--IETPYFLYSSWNLFVTLVSVPSILLALW-LTRFPESP  217 (249)
Q Consensus       170 ~l~~~l~--~~~~~--~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~  217 (249)
                      .++++..  +....  ......-..+.+..|++.++..++..++ .+..+|.|
T Consensus       170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       170 AAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence            9998751  11000  0000001136789999988888777766 44467764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK12382 putative transporter; Provisional

Probab=99.63  E-value=1.4e-14  Score=121.47  Aligned_cols=153  Identities=16%  Similarity=0.020  Sum_probs=126.9

Q ss_pred             HHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy6455          47 LSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN  126 (249)
Q Consensus        47 ~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~  126 (249)
                      ...+.|.+.++.|.+  ..++..+.+.++..+++++.|++.||+|+|+.+..+..+..++.++..+.++.+.+.+..++.
T Consensus       235 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (392)
T PRK12382        235 IGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALT  312 (392)
T ss_pred             HHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            333444444555554  356667778888899999999999999999999999888888887777777887788889999


Q ss_pred             HhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHH
Q psy6455         127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILL  206 (249)
Q Consensus       127 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  206 (249)
                      |++.+...+.....+.|.+|+++|+++.++++....+|..++|.+.+++.           +..+|+..|.+.+++.++.
T Consensus       313 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~-----------~~~g~~~~~~~~~~~~~~~  381 (392)
T PRK12382        313 GAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLA-----------TSFGYPSVFLAGAISAVLG  381 (392)
T ss_pred             HHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhCchHHHHHHHHHHHHH
Confidence            99988888888888899999999999999999999999999999999997           4468999999998888777


Q ss_pred             HHHhhc
Q psy6455         207 ALWLTR  212 (249)
Q Consensus       207 ~~~~~~  212 (249)
                      .+..++
T Consensus       382 ~~~~~~  387 (392)
T PRK12382        382 IIVTIL  387 (392)
T ss_pred             HHHHHh
Confidence            776543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.63  E-value=1e-14  Score=124.65  Aligned_cols=161  Identities=11%  Similarity=0.025  Sum_probs=122.3

Q ss_pred             HHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh-----h-----
Q psy6455          45 TVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA-----Q-----  114 (249)
Q Consensus        45 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----~-----  114 (249)
                      .....+.|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++.++..+.     +     
T Consensus       301 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (481)
T TIGR00879       301 NAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKS  380 (481)
T ss_pred             eehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc
Confidence            344556677778889998888999999999999999999999999999999999888877776665521     1     


Q ss_pred             -HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhH
Q psy6455         115 -YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWN  193 (249)
Q Consensus       115 -~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~  193 (249)
                       +...+....++.+.......+....++.|.+|++.|+++.++.+....+|.+++|.+.+.+.           +..+|+
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~-----------~~~~~~  449 (481)
T TIGR00879       381 SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTML-----------ESIGVG  449 (481)
T ss_pred             hhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhcCcc
Confidence             22222233333332222334666778899999999999999999999999999999999886           345788


Q ss_pred             HHHHHHHHHHHHHHHHhhc-ccCC
Q psy6455         194 LFVTLVSVPSILLALWLTR-FPES  216 (249)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~-~~~~  216 (249)
                      +.|++.++++++..++.++ .||+
T Consensus       450 ~~f~~~~~~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       450 GVFIFFGGLNVLGLIFVYFFLPET  473 (481)
T ss_pred             ceehhHHHHHHHHHHHHheecccC
Confidence            8888888888777776544 5654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03699 putative transporter; Provisional

Probab=99.62  E-value=4.5e-15  Score=124.60  Aligned_cols=162  Identities=10%  Similarity=-0.012  Sum_probs=128.4

Q ss_pred             HHHHHHHhhccccc-cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy6455          42 ISITVLSFVLPSAQ-CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFL  120 (249)
Q Consensus        42 ~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~  120 (249)
                      ........+.|.+. +++|.|..+.+++.+.+.++..++.++.|+++||++||+.+.....+..+..++....++.+.+.
T Consensus       219 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  298 (394)
T PRK03699        219 LAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLL  298 (394)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence            33444556677666 56899999999999999999999999999999999999998888777777666666666766666


Q ss_pred             HHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHH
Q psy6455         121 ALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVS  200 (249)
Q Consensus       121 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~  200 (249)
                      +..++.|++.+..++...++..|..| +.+++..+.......+|..++|.+.+++.           +..|++..++..+
T Consensus       299 ~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~-----------~~~g~~~~~~~~~  366 (394)
T PRK03699        299 YAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIV-----------AHFGLQAALLTAN  366 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHH-----------HHhCchhhhhhhH
Confidence            77788898888777877777778776 44677788888888899999999999997           4458888888888


Q ss_pred             HHHHHHHHHhhcccC
Q psy6455         201 VPSILLALWLTRFPE  215 (249)
Q Consensus       201 ~~~~~~~~~~~~~~~  215 (249)
                      ++.+++.+....+++
T Consensus       367 ~~~~~~~~~~~~~~~  381 (394)
T PRK03699        367 GLYAVVFVMCILLGF  381 (394)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            887777665555443

>TIGR00897 2A0118 polyol permease family

Probab=99.62  E-value=2.6e-14  Score=120.36  Aligned_cols=163  Identities=14%  Similarity=0.119  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHH-HHHHHHHHHHHHHHh----
Q psy6455          38 AYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLI-GALLVDGLCGIASSV----  112 (249)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~-~~~~~~~i~~~~~~~----  112 (249)
                      ++............|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+...++.+.+..    
T Consensus       232 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~  311 (402)
T TIGR00897       232 IINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH  311 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            333344445556677777889999999999999999999999999999999999988764 333333333322222    


Q ss_pred             -hhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccch
Q psy6455         113 -AQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSS  191 (249)
Q Consensus       113 -~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~  191 (249)
                       .++.+...+..++.|++.+...+ ....+.|.. +++|+++.++.+....+|..++|.+.+.+.           +..|
T Consensus       312 ~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~-----------~~~g  378 (402)
T TIGR00897       312 FGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFI-----------GFFG  378 (402)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhcc
Confidence             23556667778888887776544 345666765 468999999999999999999999999998           4458


Q ss_pred             hHHHHHHHHHHHHHHHHHhhcc
Q psy6455         192 WNLFVTLVSVPSILLALWLTRF  213 (249)
Q Consensus       192 w~~~~~~~~~~~~~~~~~~~~~  213 (249)
                      |...+++.+++.++..+...++
T Consensus       379 ~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       379 AIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999988888877765554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.62  E-value=1.8e-14  Score=121.01  Aligned_cols=165  Identities=16%  Similarity=0.137  Sum_probs=123.6

Q ss_pred             HHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhh-HHHHHH
Q psy6455          42 ISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ-YYGVFL  120 (249)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~  120 (249)
                      ..........|.+.+++|.+..+.+...+.+.++..++.++.|++.||+|||+.++.+..+..++..+....+ +...+ 
T Consensus       219 ~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-  297 (393)
T PRK09705        219 GGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL-  297 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH-
Confidence            3344455556666667899999999999999999999999999999999999999888877777665544322 22222 


Q ss_pred             HHHHHHHhhhcccccccccccccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHH
Q psy6455         121 ALRFINGFAVTGTLGICFPYLGEFQP-TAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLV  199 (249)
Q Consensus       121 ~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~  199 (249)
                       ..++.|++.+...+.......+..+ +++|++..++.+....++..++|.+.+++.+..          .+|...+.+.
T Consensus       298 -~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~----------g~~~~~~~~~  366 (393)
T PRK09705        298 -WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS----------GNYLMDWAFH  366 (393)
T ss_pred             -HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCchHHHHHH
Confidence             2345678777777777666667764 578999999999999999999999999998543          3577778877


Q ss_pred             HHHHHHHHHH-hhcccCChh
Q psy6455         200 SVPSILLALW-LTRFPESPK  218 (249)
Q Consensus       200 ~~~~~~~~~~-~~~~~~~~~  218 (249)
                      ++..++..++ ..+.||+++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~  386 (393)
T PRK09705        367 ALCVVGLMIITLRFAPARFP  386 (393)
T ss_pred             HHHHHHHHHHHHHhcccccc
Confidence            7777666665 334566654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.61  E-value=2.8e-14  Score=119.25  Aligned_cols=151  Identities=23%  Similarity=0.186  Sum_probs=121.4

Q ss_pred             hhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q psy6455          49 FVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGF  128 (249)
Q Consensus        49 ~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~  128 (249)
                      .++|.+.++.|.+..+.+++.+...++..+++++.|+++||+|+|+++..+..+..++.....  . ........++.|+
T Consensus       221 ~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~  297 (381)
T PRK03633        221 GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGA  297 (381)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHH
Confidence            445666677899988999999999999999999999999999999999888877777654432  2 2233456677787


Q ss_pred             hhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHH
Q psy6455         129 AVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLAL  208 (249)
Q Consensus       129 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  208 (249)
                      +.+...|...+++.|..|+++++...+.++....+|..++|.+++++.           +..+|++.|.+.+.+.++..+
T Consensus       298 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~-----------~~~g~~~~f~~~~~~~l~~~~  366 (381)
T PRK03633        298 AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLM-----------QNYSDNLLFIMIASVSFIYLL  366 (381)
T ss_pred             HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhCccHHHHHHHHHHHHHHH
Confidence            766778888888999999888888888888889999999999999997           446889999988888877766


Q ss_pred             Hhhcc
Q psy6455         209 WLTRF  213 (249)
Q Consensus       209 ~~~~~  213 (249)
                      ..++.
T Consensus       367 ~~~~~  371 (381)
T PRK03633        367 MLLRK  371 (381)
T ss_pred             HHHhc
Confidence            55543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.61  E-value=3.6e-14  Score=118.27  Aligned_cols=167  Identities=18%  Similarity=0.106  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHHHHhhccccc-cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhH--HHH------HHHHHH
Q psy6455          33 GGLLYAYAAISITVLSFVLPSAQ-CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKI--TLI------GALLVD  103 (249)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~--~~~------~~~~~~  103 (249)
                      ..+..+.............|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+  ...      .+.++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (399)
T TIGR00893       220 LALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVL  299 (399)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence            33344444444555555666554 558889899999999999999999999999999999996  111      111111


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy6455         104 GLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE  183 (249)
Q Consensus       104 ~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~  183 (249)
                      .+........++.+.......+.+++.+ ..+...++++|.+|+++|+++.++.+....+|..++|.+.+.+.+      
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~------  372 (399)
T TIGR00893       300 SLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAA------  372 (399)
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhcc------
Confidence            1111112222344444444444444444 688889999999999999999999999999999999999999974      


Q ss_pred             Ccccccch-hHHHHHHHHHHHHHHHHHhh
Q psy6455         184 TPYFLYSS-WNLFVTLVSVPSILLALWLT  211 (249)
Q Consensus       184 ~~~~~~~~-w~~~~~~~~~~~~~~~~~~~  211 (249)
                           ..+ |+..+.+.++..++..+..+
T Consensus       373 -----~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       373 -----TTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             -----CCCchhHHHHHHHHHHHHHHHHHH
Confidence                 345 88888888887777666543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.61  E-value=5.6e-14  Score=121.61  Aligned_cols=181  Identities=17%  Similarity=0.078  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHhhccccccccCCCCcchhh------------HHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH
Q psy6455          37 YAYAAISITVLSFVLPSAQCDFGMTSSDKGW------------LNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDG  104 (249)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~------------~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~  104 (249)
                      .+...+..+......|.+.++.|.+....+.            ......++..++.++.++++||+|||++++++.++.+
T Consensus       297 ~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~  376 (502)
T TIGR00887       297 WFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILT  376 (502)
T ss_pred             HHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Confidence            3333334444555577777777876543221            1233445666788899999999999999988887777


Q ss_pred             HHHHHHHhhhH----HHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy6455         105 LCGIASSVAQY----YGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNL  180 (249)
Q Consensus       105 i~~~~~~~~~~----~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  180 (249)
                      ++..+..+..+    ...+...-+...++..+..+....+.+|.+|++.|+++.++.+....++..++|.+.+++.+...
T Consensus       377 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~  456 (502)
T TIGR00887       377 VLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGD  456 (502)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccc
Confidence            76655544321    11111111122222223455667788999999999999999999999999999999998874320


Q ss_pred             cccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChh
Q psy6455         181 RIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPK  218 (249)
Q Consensus       181 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (249)
                      .. .+.....++...|++.+++.++..+..+++||++.
T Consensus       457 ~~-~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~  493 (502)
T TIGR00887       457 PT-KGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKG  493 (502)
T ss_pred             cc-ccccccccchHHHHHHHHHHHHHHHHheEeccCCC
Confidence            00 00000134556777777777777666666788743

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.60  E-value=2.3e-14  Score=123.41  Aligned_cols=169  Identities=17%  Similarity=0.131  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh-
Q psy6455          35 LLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA-  113 (249)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-  113 (249)
                      .+.....+...+....++-+..+..-|+...+++..+..+...+.++++|.++||++||++++.+.++.++......+. 
T Consensus        17 ~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~   96 (524)
T PF05977_consen   17 IAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLA   96 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444555666688899999999999999999999999999999999999988877665544332 


Q ss_pred             ----hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccc
Q psy6455         114 ----QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLY  189 (249)
Q Consensus       114 ----~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~  189 (249)
                          .+.+.+++..++.|++.+...|...+++.|+.|+++...++++.+...++..++||.++|.+.           ..
T Consensus        97 ~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv-----------a~  165 (524)
T PF05977_consen   97 FFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV-----------AF  165 (524)
T ss_pred             HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH-----------HH
Confidence                367888999999999999999999999999999999999999999999999999999999987           33


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhccc
Q psy6455         190 SSWNLFVTLVSVPSILLALWLTRFP  214 (249)
Q Consensus       190 ~~w~~~~~~~~~~~~~~~~~~~~~~  214 (249)
                      .|-.+.|.+.++..++..+.+...+
T Consensus       166 ~G~~~~f~inalsfl~~i~~l~~~~  190 (524)
T PF05977_consen  166 FGAAAAFLINALSFLISILALLRWK  190 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            4777888888776666655555554

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.60  E-value=8.6e-14  Score=119.66  Aligned_cols=167  Identities=16%  Similarity=-0.024  Sum_probs=120.2

Q ss_pred             HHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhh--H-H-HHHHH
Q psy6455          46 VLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ--Y-Y-GVFLA  121 (249)
Q Consensus        46 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~-~-~~l~~  121 (249)
                      ....+.|.+.++.|.+.....+......++..++.++.|+++||+|||++++.+.++.+++.+++....  + . .....
T Consensus       289 ~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~  368 (479)
T PRK10077        289 VVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL  368 (479)
T ss_pred             HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence            334556777788898887778888888889999999999999999999999999999888877665432  1 1 12233


Q ss_pred             HHHHHHhhhcc-cccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHH
Q psy6455         122 LRFINGFAVTG-TLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVS  200 (249)
Q Consensus       122 ~~~l~G~~~g~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~  200 (249)
                      +.++.+++.+. ..+..+.+++|.+|+++|++++++.+....+|..+++.+.+.+.+.. .    ..+..+|+..|++.+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~-~----~~~~~~~~~~~~~~~  443 (479)
T PRK10077        369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNS-W----LVAHFHNGFSYWIYG  443 (479)
T ss_pred             HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-c----hhhhccCccHHHHHH
Confidence            34444444443 23667899999999999999999999999999988877766543100 0    003457788888877


Q ss_pred             HHHHHHHHHhh-cccCCh
Q psy6455         201 VPSILLALWLT-RFPESP  217 (249)
Q Consensus       201 ~~~~~~~~~~~-~~~~~~  217 (249)
                      ++.++.+++.+ +.||++
T Consensus       444 ~~~~~~~~~~~~~~~e~~  461 (479)
T PRK10077        444 CMGVLAALFMWKFVPETK  461 (479)
T ss_pred             HHHHHHHHHHHhccccCC
Confidence            77766666644 456653

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.59  E-value=1.1e-14  Score=125.70  Aligned_cols=145  Identities=19%  Similarity=0.151  Sum_probs=111.4

Q ss_pred             Hhhccccc-cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHH
Q psy6455          48 SFVLPSAQ-CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA--QYYGVFLALRF  124 (249)
Q Consensus        48 ~~~~~~~~-~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~~~  124 (249)
                      ...+|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||++++.+.++..+..+.....  .+.+.+.+..+
T Consensus       295 ~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (496)
T PRK03893        295 QALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLF  374 (496)
T ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            34566666 5789999999999999999999999999999999999999888877666655443332  33444444455


Q ss_pred             HHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHH
Q psy6455         125 INGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPS  203 (249)
Q Consensus       125 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~  203 (249)
                      +.++...+..+..++++.|.+|+++|++.+++.+....+|..++|.+++.+.           +..+|+..+...+...
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~-----------~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        375 FQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIA-----------QRLDLGTALASLSFSL  442 (496)
T ss_pred             HHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHh-----------ccCChHHHHHHHHHHH
Confidence            5444333445667788999999999999999999988999999999999997           4457877775554433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.58  E-value=8.5e-15  Score=122.18  Aligned_cols=159  Identities=15%  Similarity=0.151  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHhhccccc-cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHH--HHHHh
Q psy6455          36 LYAYAAISITVLSFVLPSAQ-CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCG--IASSV  112 (249)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~--~~~~~  112 (249)
                      ..+.............|.+. +++|.+..+.+.+.....++..++.++.|+++||+|||+.+..+..+..+..  ....+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~  306 (394)
T TIGR00883       227 LVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMAL  306 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444455555666655 6688999999999999999999999999999999999998776554444332  12222


Q ss_pred             --hhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccCccccc
Q psy6455         113 --AQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCW-LEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLY  189 (249)
Q Consensus       113 --~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~  189 (249)
                        .++.+.+.+..++.|++.+...+...+++.|.+|+++|+++.++ ++....+|..++|.+++++.+..          
T Consensus       307 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~----------  376 (394)
T TIGR00883       307 LDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMT----------  376 (394)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHc----------
Confidence              24566667778888988888889999999999999999999998 56667789999999999997432          


Q ss_pred             chhHHHHHHHHHHHH
Q psy6455         190 SSWNLFVTLVSVPSI  204 (249)
Q Consensus       190 ~~w~~~~~~~~~~~~  204 (249)
                      ..|+..++...+..+
T Consensus       377 g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       377 GDWYAIGYYLAALAL  391 (394)
T ss_pred             CcchhHHHHHHHHHH
Confidence            237776666555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.58  E-value=1.5e-13  Score=116.46  Aligned_cols=130  Identities=21%  Similarity=0.148  Sum_probs=97.4

Q ss_pred             HHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy6455          47 LSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN  126 (249)
Q Consensus        47 ~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~  126 (249)
                      +...+|.+.++.|.+..+.+.+.+...++..++.++.|++.||+|||+.+..+.++..+..+.....++.....+..++.
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF  329 (426)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            34456666667788888899999999999999999999999999999999888877766555443322111112222333


Q ss_pred             Hh--hhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455         127 GF--AVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI  176 (249)
Q Consensus       127 G~--~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~  176 (249)
                      |+  +..+..+..+.++.|.+|++.|++++|+......++..++|.+.+++.
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~  381 (426)
T PRK12307        330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLG  381 (426)
T ss_pred             HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence            33  222334455678899999999999999998888999999999999997

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.58  E-value=3.4e-14  Score=120.70  Aligned_cols=164  Identities=10%  Similarity=-0.021  Sum_probs=124.3

Q ss_pred             hccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhh----cchhH-HHHHHHHHHHHHHHHHHhhhH------HHH
Q psy6455          50 VLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT----QGRKI-TLIGALLVDGLCGIASSVAQY------YGV  118 (249)
Q Consensus        50 ~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr----~Grr~-~~~~~~~~~~i~~~~~~~~~~------~~~  118 (249)
                      ..+.+.+++|+++.++|++.++..+..++..++.|+++||    +|||| .++.+....+++.+++...++      ...
T Consensus        22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~  101 (437)
T TIGR00792        22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY  101 (437)
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence            3444566799999999999999999999999999999997    68755 566777777777776665542      456


Q ss_pred             HHHHHHHHHhhhccccccccccccccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHH
Q psy6455         119 FLALRFINGFAVTGTLGICFPYLGEFQ-PTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVT  197 (249)
Q Consensus       119 l~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~  197 (249)
                      +++.+++.+++.+....+..++..|+. ++++|++..++.+.+..+|..+++.+.+.+......    ..+..+|++.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~----~~~~~g~~~~~~  177 (437)
T TIGR00792       102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGG----GDDKFGWFMFAL  177 (437)
T ss_pred             HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CcccccHHHHHH
Confidence            677788888888877778888889987 568899999998888888888877766655432100    013468999999


Q ss_pred             HHHHHHHHHHHHh-hcccCCh
Q psy6455         198 LVSVPSILLALWL-TRFPESP  217 (249)
Q Consensus       198 ~~~~~~~~~~~~~-~~~~~~~  217 (249)
                      +.+++.++..+.. +..+|++
T Consensus       178 i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       178 VLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             HHHHHHHHHHHHHHcCCEecC
Confidence            9888887776653 4456654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00895 2A0115 benzoate transport

Probab=99.56  E-value=9.5e-14  Score=116.09  Aligned_cols=137  Identities=27%  Similarity=0.294  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy6455          39 YAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGV  118 (249)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~  118 (249)
                      .............|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+....+......++.....+.+.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (398)
T TIGR00895       261 MLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTL  340 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHH
Confidence            33444445556667777889999999999999999999999999999999999995544444433333333333456667


Q ss_pred             HHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455         119 FLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLL  175 (249)
Q Consensus       119 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l  175 (249)
                      ..+..++.|++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+++++
T Consensus       341 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       341 LLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            778888999999999999999999999999999999999999999999999998875

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.56  E-value=8.5e-14  Score=116.79  Aligned_cols=133  Identities=24%  Similarity=0.310  Sum_probs=107.1

Q ss_pred             HHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHH
Q psy6455          46 VLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGI-ASSVAQYYGVFLALR  123 (249)
Q Consensus        46 ~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~-~~~~~~~~~~l~~~~  123 (249)
                      ......|.+ .+++|.+..+.+++.+...++..++.++.|+++||+|||+.+.++.++..+..+ .....++.+.+.+..
T Consensus       256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (405)
T TIGR00891       256 PIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGL  335 (405)
T ss_pred             hhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence            333445554 456899999999999999999999999999999999999998888766533322 233345566666676


Q ss_pred             HHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy6455         124 FINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL  178 (249)
Q Consensus       124 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~  178 (249)
                      ++.|++.+...+....++.|.+|+++|++++|+.+....+|..++|.+.+++.+.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~  390 (405)
T TIGR00891       336 FFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR  390 (405)
T ss_pred             HHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777777777788888999999999999999999999999999999999999843

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.56  E-value=2.2e-13  Score=116.22  Aligned_cols=159  Identities=15%  Similarity=0.107  Sum_probs=135.0

Q ss_pred             HhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchh--HHHHHHHHHHHHHHHHHHh--------hhHHH
Q psy6455          48 SFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRK--ITLIGALLVDGLCGIASSV--------AQYYG  117 (249)
Q Consensus        48 ~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr--~~~~~~~~~~~i~~~~~~~--------~~~~~  117 (249)
                      .....+..+++|++..+...+.....+...+|++++|++.||+|.|  ++++++.++..+..+...+        .++.+
T Consensus       302 ~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~  381 (477)
T PF11700_consen  302 SFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPW  381 (477)
T ss_pred             HHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHH
Confidence            3333344557999999999999999999999999999999999999  8888888877655554444        45677


Q ss_pred             HHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHH
Q psy6455         118 VFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVT  197 (249)
Q Consensus       118 ~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~  197 (249)
                      .+.+.-++.|+..|..++..-++.+|+.|+++.+...|++....-..+.+||++.+.+.+..          .+-|+.+.
T Consensus       382 ~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t----------g~~r~g~~  451 (477)
T PF11700_consen  382 EFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT----------GSQRYGFL  451 (477)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCchhHHH
Confidence            78888899999999999999999999999999999999999999999999999999998654          45788888


Q ss_pred             HHHHHHHHHHHHhhcccCC
Q psy6455         198 LVSVPSILLALWLTRFPES  216 (249)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~  216 (249)
                      ...++.++.++++++++.+
T Consensus       452 ~l~~lf~~gl~ll~~v~~~  470 (477)
T PF11700_consen  452 FLLVLFLIGLILLFFVDVE  470 (477)
T ss_pred             HHHHHHHHHHHHHhhccch
Confidence            8888888888887776543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10504 putative transporter; Provisional

Probab=99.55  E-value=1.1e-13  Score=118.80  Aligned_cols=139  Identities=16%  Similarity=0.144  Sum_probs=112.4

Q ss_pred             HHHHHHHHhhcccccc-ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh---hHH
Q psy6455          41 AISITVLSFVLPSAQC-DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA---QYY  116 (249)
Q Consensus        41 ~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---~~~  116 (249)
                      ...........|++.+ .+|.++.+.+++.....++..++.++.|++.||+|||+++..+.++.++...+..+.   ++.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (471)
T PRK10504        274 RIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWY  353 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccH
Confidence            3334445556676665 488899999999999999999999999999999999999998888777776655543   334


Q ss_pred             HHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy6455         117 GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLN  179 (249)
Q Consensus       117 ~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  179 (249)
                      +.+.+..++.|++.+...+.....+.+..|++.++.+.++.++...+|..+|+.+.+.+.+..
T Consensus       354 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~  416 (471)
T PRK10504        354 YLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF  416 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444556677888888888888899999999999999999999999999999999999886543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.55  E-value=1.6e-13  Score=118.32  Aligned_cols=153  Identities=18%  Similarity=0.115  Sum_probs=134.8

Q ss_pred             HHhhcccccc-ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy6455          47 LSFVLPSAQC-DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFI  125 (249)
Q Consensus        47 ~~~~~~~~~~-~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l  125 (249)
                      +...+|.+.+ ++|.++...|++.+.+.+|..+|+++.+++.+|+++++.+..+.++.+++.+..++.++.+...+..++
T Consensus       237 ~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l  316 (524)
T PF05977_consen  237 VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFL  316 (524)
T ss_pred             HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            3455777664 589999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHH
Q psy6455         126 NGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSIL  205 (249)
Q Consensus       126 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  205 (249)
                      .|++.........+.+.+..|++.||+.++++++....+..+|..+.|.+.           +..|.+..+.+.++..++
T Consensus       317 ~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la-----------~~~g~~~al~~a~~~lll  385 (524)
T PF05977_consen  317 AGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA-----------DHFGVRTALLIAGAALLL  385 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhCHHHHHHHHHHHHHH
Confidence            999988888888999999999999999999999999999999999999997           445778888877766655


Q ss_pred             HHHHh
Q psy6455         206 LALWL  210 (249)
Q Consensus       206 ~~~~~  210 (249)
                      ..++.
T Consensus       386 ~~~~~  390 (524)
T PF05977_consen  386 SALIA  390 (524)
T ss_pred             HHHHH
Confidence            55553

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.54  E-value=2e-13  Score=114.13  Aligned_cols=146  Identities=10%  Similarity=0.010  Sum_probs=119.7

Q ss_pred             ccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Q psy6455          51 LPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAV  130 (249)
Q Consensus        51 ~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~  130 (249)
                      .|.+.++.|.+..+.+.+.+...++..+...+.|++.||+|+|+++..+.+..+++.+.....++.+.+++..++.|++.
T Consensus       228 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  307 (382)
T PRK11128        228 SAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTF  307 (382)
T ss_pred             HHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            34444678999889999999998999999999999999999999999999998888888888889998899999999998


Q ss_pred             cccccccccccccccccchhHHHHHHHH-HHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH
Q psy6455         131 TGTLGICFPYLGEFQPTAYREKVLCWLE-MFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW  209 (249)
Q Consensus       131 g~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  209 (249)
                      +...+....++.+. +++++++..+.++ ....+|..++|.++|.+.+           ..++ ..++..+++.+++++.
T Consensus       308 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~-----------~~g~-~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        308 TVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ-----------HLGA-GVFWVMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hccH-HHHHHHHHHHHHHHHH
Confidence            88888888888887 5566788888875 5567888999999999984           3455 4566666666555444

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.54  E-value=1.3e-13  Score=113.85  Aligned_cols=129  Identities=22%  Similarity=0.220  Sum_probs=115.1

Q ss_pred             hhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHH
Q psy6455          49 FVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQY-YGVFLALRFIN  126 (249)
Q Consensus        49 ~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~-~~~l~~~~~l~  126 (249)
                      ...|.+.++ +|.+..+.+++.+...++..++.++.+++.||+|||+.+..+..+.+++.....+.++ .+.+.+..++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI  311 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence            556776665 8999999999999999999999999999999999999999888777777777777664 77888889999


Q ss_pred             HhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455         127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP  177 (249)
Q Consensus       127 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~  177 (249)
                      |++.+...+...+++.|..|+++|++..++.+....++..++|.+++.+.+
T Consensus       312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998899999999999999999999999999999999999999998863

>KOG2325|consensus

Probab=99.54  E-value=5.3e-14  Score=117.93  Aligned_cols=197  Identities=17%  Similarity=0.193  Sum_probs=150.6

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcch-hHHHH
Q psy6455          21 GYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCD--FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGR-KITLI   97 (249)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Gr-r~~~~   97 (249)
                      .-++.+|+.+.+..+..+.......++.+..-.+.++  .+.+.+..|++.++..++.+++++..|+.+.|.+. |+.++
T Consensus        27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli  106 (488)
T KOG2325|consen   27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLI  106 (488)
T ss_pred             cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHH
Confidence            3456678888888888888888877777666555566  66777889999999999999999999999999997 88999


Q ss_pred             HHHHHHHHHHHHH-Hhh---h-HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy6455          98 GALLVDGLCGIAS-SVA---Q-YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVA  172 (249)
Q Consensus        98 ~~~~~~~i~~~~~-~~~---~-~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~  172 (249)
                      .+.++.+++.++. .+.   + ..+.++++|++.|+|.| ..+..-+|+++....++|.++++..+.+..+|.++||.+.
T Consensus       107 ~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q  185 (488)
T KOG2325|consen  107 VSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQ  185 (488)
T ss_pred             HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHH
Confidence            9999999999887 332   3 57889999999999865 4677889999988889999999999999999999999998


Q ss_pred             HHHhccccccc--CcccccchhHHHHHHHHHHHHHHHHHh-hcccCChh
Q psy6455         173 WLLIPLNLRIE--TPYFLYSSWNLFVTLVSVPSILLALWL-TRFPESPK  218 (249)
Q Consensus       173 ~~l~~~~~~~~--~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~  218 (249)
                      ..+.....+..  .......-+..+-++.+++.++.++++ ++++|..+
T Consensus       186 ~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  186 LAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             HHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence            88875553221  000111223445566666666666653 34566543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.54  E-value=7.1e-13  Score=108.78  Aligned_cols=162  Identities=20%  Similarity=0.146  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh-hHH
Q psy6455          38 AYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA-QYY  116 (249)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~  116 (249)
                      +..+..+..+.++-|.+.+..|.|.+..+++...+.++..+|+.+.|+++|| +.|+.+.....+.++..+...+. ++.
T Consensus       222 l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~  300 (394)
T COG2814         222 LFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASP  300 (394)
T ss_pred             HHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchH
Confidence            3344455666777888888899999999999999999999999999999999 99999888877777777666554 456


Q ss_pred             HHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHH
Q psy6455         117 GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFV  196 (249)
Q Consensus       117 ~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~  196 (249)
                      +..++.-++.|+..+.........+++ ..++.+..+.+++...+++|..+|..+++.+.           ++.|+....
T Consensus       301 ~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~-----------~~~g~~~~~  368 (394)
T COG2814         301 ALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVL-----------DALGYAATG  368 (394)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhchHHHH
Confidence            666677777888877777777777777 44688999999999999999999999999998           557999999


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy6455         197 TLVSVPSILLALWLTR  212 (249)
Q Consensus       197 ~~~~~~~~~~~~~~~~  212 (249)
                      ++.+++.+++.++.+.
T Consensus       369 ~~~a~l~~~a~~~~~~  384 (394)
T COG2814         369 WVGAALLLLALLLALL  384 (394)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999998888887654

>TIGR00898 2A0119 cation transport protein

Probab=99.53  E-value=3.9e-13  Score=116.41  Aligned_cols=148  Identities=19%  Similarity=0.151  Sum_probs=114.7

Q ss_pred             cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHhhhc
Q psy6455          54 AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYY--GVFLALRFINGFAVT  131 (249)
Q Consensus        54 ~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~~~l~G~~~g  131 (249)
                      ..++++.+.   .+......+...++.++.+++.||+|||+.+.++.++.+++.++..+.++.  +...+..++.+++.+
T Consensus       349 ~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  425 (505)
T TIGR00898       349 DLGNLGGNI---YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGIT  425 (505)
T ss_pred             cccccCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence            334444442   334445566778889999999999999999999998888887777665532  444555566677777


Q ss_pred             ccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhh
Q psy6455         132 GTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLT  211 (249)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  211 (249)
                      ..++..+.+.+|.+|++.|++++++.+....+|.+++|.+.+ +.            ..++...+.+.++..++..+..+
T Consensus       426 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~------------~~~~~~~~~~~~~~~~~~~~~~~  492 (505)
T TIGR00898       426 SAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LG------------EKWLFLPLVLFGGLALLAGILTL  492 (505)
T ss_pred             HHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HH------------HHHHhhHHHHHHHHHHHHHHHHH
Confidence            778888899999999999999999999999999999999988 42            24566778888888888877777


Q ss_pred             cccCCh
Q psy6455         212 RFPESP  217 (249)
Q Consensus       212 ~~~~~~  217 (249)
                      ++||+.
T Consensus       493 ~lpet~  498 (505)
T TIGR00898       493 FLPETK  498 (505)
T ss_pred             cCcCCC
Confidence            888864

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.53  E-value=3.6e-13  Score=114.49  Aligned_cols=134  Identities=15%  Similarity=0.154  Sum_probs=106.9

Q ss_pred             HHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHH
Q psy6455          45 TVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA-QYYGVFLAL  122 (249)
Q Consensus        45 ~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~  122 (249)
                      .......+.+.++ ++ +....+++.+...++..++.+++++++||+|+|+++.++.++.+++.+...+. ++.+.+++.
T Consensus       239 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (437)
T TIGR00792       239 NIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVL  317 (437)
T ss_pred             HHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHH
Confidence            3333344555443 44 55667788888899999999999999999999999999988888877766554 356666777


Q ss_pred             HHHHHhhhcccccccccccccccc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy6455         123 RFINGFAVTGTLGICFPYLGEFQP-------TAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLN  179 (249)
Q Consensus       123 ~~l~G~~~g~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  179 (249)
                      .++.|++.+...+...++++|..+       ++.+|...++++....+|..+++.+.+.+.+..
T Consensus       318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~  381 (437)
T TIGR00792       318 IILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII  381 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            888899988888888899988865       456799999999999999999999999987543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.53  E-value=2.1e-13  Score=116.54  Aligned_cols=162  Identities=14%  Similarity=0.075  Sum_probs=109.5

Q ss_pred             HHHHHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc--chhHHH-HHHHHHHHHHHHHHHh--hh
Q psy6455          41 AISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ--GRKITL-IGALLVDGLCGIASSV--AQ  114 (249)
Q Consensus        41 ~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~--Grr~~~-~~~~~~~~i~~~~~~~--~~  114 (249)
                      ....+....++|.+.++ .|.+..+.+++...+.++..++.++.|+++||+  +||+.. +....+..++.+...+  ..
T Consensus       266 ~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~  345 (452)
T PRK11273        266 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAG  345 (452)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhccc
Confidence            33344455667776554 788888999999999999999999999999999  555432 2222223333222222  22


Q ss_pred             HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHH-HHHHHHHHHhcccccccCcccccchhH
Q psy6455         115 YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGII-VLPAVAWLLIPLNLRIETPYFLYSSWN  193 (249)
Q Consensus       115 ~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~l~~~l~~~~~~~~~~~~~~~~w~  193 (249)
                      +.+...+..++.|.+..........+..|.+|++.|+++.++.+....+|+. .+|.+.+.+.           +..||+
T Consensus       346 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~-----------~~~g~~  414 (452)
T PRK11273        346 NPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV-----------DFFGWD  414 (452)
T ss_pred             ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHH-----------HHhcch
Confidence            3444444555555543332233345677999999999999999888777765 4799999987           445899


Q ss_pred             HHHHHHHHHHHHHHHHhhcc
Q psy6455         194 LFVTLVSVPSILLALWLTRF  213 (249)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~  213 (249)
                      ..|.+.++.++++++....+
T Consensus       415 ~~f~~~~~~~~~~~~~~~~~  434 (452)
T PRK11273        415 GGFMVMIGGSILAVILLIVV  434 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99988888877776665443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.53  E-value=3.5e-13  Score=113.97  Aligned_cols=158  Identities=13%  Similarity=0.096  Sum_probs=110.6

Q ss_pred             HHHHHH-HhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcch-hHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy6455          42 ISITVL-SFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGR-KITLIGALLVDGLCGIASSVAQYYGVF  119 (249)
Q Consensus        42 ~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~~~~~~~~~~l  119 (249)
                      .....+ ++..+.+.+++|++..+.|++.+.+.++..++++++|+++||+|| |+++.++.++..++..+..+.++++.+
T Consensus        16 ~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (418)
T TIGR00889        16 FIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGM   95 (418)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            334444 444455667799999999999999999999999999999999965 778888888888888888888889989


Q ss_pred             HHHHHHHHhhhccccccccccc----c----cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccch
Q psy6455         120 LALRFINGFAVTGTLGICFPYL----G----EFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSS  191 (249)
Q Consensus       120 ~~~~~l~G~~~g~~~~~~~~~~----~----~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~  191 (249)
                      .+.|++.|++.+...+...+..    .    |......|.+..+      .+|.+++|.+++.+.           ....
T Consensus        96 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~-----------~~~~  158 (418)
T TIGR00889        96 FPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLD-----------IELS  158 (418)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhc-----------ccch
Confidence            9999999987665555444332    1    2222223333333      367788888887762           1124


Q ss_pred             hHHHHHHHHHHHHHHHHHhhcccCCh
Q psy6455         192 WNLFVTLVSVPSILLALWLTRFPESP  217 (249)
Q Consensus       192 w~~~~~~~~~~~~~~~~~~~~~~~~~  217 (249)
                      |. +|++.++..++..+..+++||+|
T Consensus       159 ~~-~f~~~~~~~~~~~~~~~~~~e~~  183 (418)
T TIGR00889       159 NI-QLYITAGSSALLGVFALTLPDIP  183 (418)
T ss_pred             hH-HHHHHHHHHHHHHHHHhcCCCCC
Confidence            54 35555555555555556678765

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.52  E-value=3.7e-13  Score=114.47  Aligned_cols=160  Identities=15%  Similarity=0.045  Sum_probs=109.5

Q ss_pred             HHHHHHHHhhccccc-cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc--chhHHH-HH---HHHHHHHHHHHHHhh
Q psy6455          41 AISITVLSFVLPSAQ-CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ--GRKITL-IG---ALLVDGLCGIASSVA  113 (249)
Q Consensus        41 ~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~--Grr~~~-~~---~~~~~~i~~~~~~~~  113 (249)
                      ..........+|.+. +++|.+..+.++..+.+.++..++.++.|+++||+  ++|+.. ..   +.++..++..... .
T Consensus       256 ~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~  334 (434)
T PRK11663        256 YVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-F  334 (434)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-c
Confidence            333444555666655 56899999999999999999999999999999999  333222 22   2121221111111 2


Q ss_pred             hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhH
Q psy6455         114 QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWN  193 (249)
Q Consensus       114 ~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~  193 (249)
                      .+.....+..+..|++...........+.|.+|+++|++++++.+....+|..++|.+.+++.           +..+|+
T Consensus       335 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~-----------~~~g~~  403 (434)
T PRK11663        335 ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVL-----------EIWHWT  403 (434)
T ss_pred             ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHH-----------HhcccH
Confidence            233333344444555433223333456789999999999999999999999999999999997           445899


Q ss_pred             HHHHHHHHHHHHHHHHhhc
Q psy6455         194 LFVTLVSVPSILLALWLTR  212 (249)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~  212 (249)
                      ..|++.+++.++..+....
T Consensus       404 ~~f~~~~~~~~~~~~~~~~  422 (434)
T PRK11663        404 GFFVVISIAAGISALLLLP  422 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999998888777665543

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.51  E-value=8.6e-13  Score=113.80  Aligned_cols=155  Identities=14%  Similarity=0.147  Sum_probs=117.6

Q ss_pred             ccccccccCCCCcchhhHHH-HhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHH---Hhh-hHHHHHHHHHHH
Q psy6455          51 LPSAQCDFGMTSSDKGWLNA-APMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIAS---SVA-QYYGVFLALRFI  125 (249)
Q Consensus        51 ~~~~~~~~~~s~~~~~~~~~-~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~-~~~~~l~~~~~l  125 (249)
                      .|.+.+++|.+..+.+++.. ...++..++.+++|+++||+|+|+.++++.++.+++.+..   ... ++.+.+.+..++
T Consensus       246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l  325 (491)
T PRK11010        246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFF  325 (491)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            34445678999999999874 5668999999999999999999998777666555543322   222 344444555566


Q ss_pred             HHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHH
Q psy6455         126 NGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSIL  205 (249)
Q Consensus       126 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  205 (249)
                      ..++.|...+...++..+..+++.+++..++.+....+|..+++.+.+++.           +..||+..|.+.+++.++
T Consensus       326 ~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~-----------~~~G~~~~f~~~~~~~l~  394 (491)
T PRK11010        326 ENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFV-----------EAHGWPTFYLFSVAAAVP  394 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhChHHHHHHHHHHHHH
Confidence            555555555666788889999999999999999999999998888899987           445899999999988888


Q ss_pred             HHHHhhcccCC
Q psy6455         206 LALWLTRFPES  216 (249)
Q Consensus       206 ~~~~~~~~~~~  216 (249)
                      +.+...+++++
T Consensus       395 ~l~~~~~~~~~  405 (491)
T PRK11010        395 GLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHhc
Confidence            87776665543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.51  E-value=8.3e-13  Score=110.74  Aligned_cols=175  Identities=15%  Similarity=-0.015  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhH--HHHhHHHHHHHHHHHHh-hhhhcchhHHHHHHHHHH-HH
Q psy6455          30 VIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWL--NAAPMLGMVFGSYFWGC-LADTQGRKITLIGALLVD-GL  105 (249)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~i~~~i~~~~~g~-l~dr~Grr~~~~~~~~~~-~i  105 (249)
                      +..+...++.++.......+.+|.+.++.|.|.+++|+.  .+...+...+.+++++. .+||+||||.+++...+. .+
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~   82 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence            445566778889999999999999999999999999997  46668888888988854 799999999876655332 22


Q ss_pred             HHHHHH---hhhH-HHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy6455         106 CGIASS---VAQY-YGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLR  181 (249)
Q Consensus       106 ~~~~~~---~~~~-~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~  181 (249)
                      ......   ...+ ...++...++.++..+...+....+..|..++++++...+....+..+|..+++.+.+++.     
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~-----  157 (390)
T TIGR02718        83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLF-----  157 (390)
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            222222   1222 3333444455556666666677778888888888888888888888999999998888876     


Q ss_pred             ccCcccccchhHHHHHHHHHHHHHHHHHhhcccC
Q psy6455         182 IETPYFLYSSWNLFVTLVSVPSILLALWLTRFPE  215 (249)
Q Consensus       182 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  215 (249)
                            +..+||..|++.+++.++..+..++.+|
T Consensus       158 ------~~~gw~~~f~~~a~l~~~~~~~~~~~~~  185 (390)
T TIGR02718       158 ------GKFGQRPAFLLVACVPLASLVCVLWLKD  185 (390)
T ss_pred             ------HHhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                  4469999999999888777666555544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.51  E-value=7.1e-13  Score=112.75  Aligned_cols=139  Identities=18%  Similarity=0.147  Sum_probs=100.3

Q ss_pred             HHHHHHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH-HH---hhh
Q psy6455          40 AAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA-SS---VAQ  114 (249)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~-~~---~~~  114 (249)
                      ..........+.|.+.++ +|.+..+.+++...+.++..++.+++|+++||+|||++++.+.++..+..+. ..   ..+
T Consensus       250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  329 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAP  329 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            344455566667776554 8999888999999999999999999999999999999888765544332211 11   123


Q ss_pred             HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHH-HHHHHHHHHHHHHHHHHHhcc
Q psy6455         115 YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWL-EMFWTGGIIVLPAVAWLLIPL  178 (249)
Q Consensus       115 ~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~l~~~l~~~  178 (249)
                      +.....+..++.|++.+...+....++.|.+|++.|+++.++. +.+..+++.++|.+.+++.+.
T Consensus       330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~  394 (434)
T PRK15075        330 SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV  394 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh
Confidence            3333444455566666666666678899999999999999985 445555678899999988743

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.51  E-value=5.8e-13  Score=111.90  Aligned_cols=140  Identities=16%  Similarity=0.094  Sum_probs=117.7

Q ss_pred             CCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccc
Q psy6455          59 GMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICF  138 (249)
Q Consensus        59 ~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~  138 (249)
                      +.+....+.+.+...+...++.++.|++.||+|+|+.+.++.++.++...+....++.+.+++.+++.|++.........
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556778888888899999999999999999999999999888888777767788888888889999998766666666


Q ss_pred             cccccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH
Q psy6455         139 PYLGEFQPTAYREKVLCW-LEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW  209 (249)
Q Consensus       139 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  209 (249)
                      .+..+..+++.+++..+. ++....+|..+++.+++++.           +..||+..|.+.+++.++..+.
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~-----------~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMY-----------DSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHH-----------HhcccHHHHHHHHHHHHHHHHH
Confidence            778888888888887776 67889999999999999998           4458999999988888777665

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.50  E-value=4.4e-13  Score=115.27  Aligned_cols=152  Identities=16%  Similarity=0.082  Sum_probs=106.1

Q ss_pred             hccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchh-------HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy6455          50 VLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRK-------ITLIGALLVDGLCGIASSVAQYYGVFLA  121 (249)
Q Consensus        50 ~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr-------~~~~~~~~~~~i~~~~~~~~~~~~~l~~  121 (249)
                      .+|. +.+++|.+..+.+.+.+.+.++..++.+++|+++||+|||       ....+..++..+..++....++.+..++
T Consensus       274 ~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~  353 (476)
T PLN00028        274 IIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIV  353 (476)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            3444 3456899999999999999999999999999999999876       2333333333333344444555555555


Q ss_pred             HHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHH
Q psy6455         122 LRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSV  201 (249)
Q Consensus       122 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~  201 (249)
                      ..++.+++.+...+...+++.+..| ++|+...++.+.+..+|+.+++.+.+    ..        +..+|+..|++.++
T Consensus       354 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~----~~--------~~~~y~~~f~~~~~  420 (476)
T PLN00028        354 VMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF----TG--------SSYSTETGISLMGV  420 (476)
T ss_pred             HHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH----hc--------CCccHhhHHHHHHH
Confidence            5666666655555666667777654 68999999987766677766665533    11        23579999999988


Q ss_pred             HHHHHHHHhhccc
Q psy6455         202 PSILLALWLTRFP  214 (249)
Q Consensus       202 ~~~~~~~~~~~~~  214 (249)
                      +.+++.++.++.+
T Consensus       421 ~~~i~~~~~~~~~  433 (476)
T PLN00028        421 MIIACTLPVAFIH  433 (476)
T ss_pred             HHHHHHHHHHhee
Confidence            8888877766654

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.50  E-value=3.3e-13  Score=107.98  Aligned_cols=171  Identities=16%  Similarity=0.082  Sum_probs=146.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH
Q psy6455          30 VIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA  109 (249)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  109 (249)
                      +..+.+..+--=-....+.+.++.+.+++|+|.+.+|+++++..+...+.+++..+++.|+|.++.+..++++.+++.++
T Consensus        14 i~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~i   93 (395)
T COG2807          14 LAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILI   93 (395)
T ss_pred             HHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            33333333333334566788999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccc
Q psy6455         110 SSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLY  189 (249)
Q Consensus       110 ~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~  189 (249)
                      -... +...++.+..+.|.+.+......+..+.+.+| ++-+..+++|++..++|+.+++.+.-.+.+..          
T Consensus        94 R~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~----------  161 (395)
T COG2807          94 RSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHS----------  161 (395)
T ss_pred             Hhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh----------
Confidence            8776 77788999999999999999999999999998 45799999999999999999998888886332          


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhc
Q psy6455         190 SSWNLFVTLVSVPSILLALWLTR  212 (249)
Q Consensus       190 ~~w~~~~~~~~~~~~~~~~~~~~  212 (249)
                      .+||....+-+.+++++.+.++.
T Consensus       162 ~gW~~aL~~WAl~allAl~~WlP  184 (395)
T COG2807         162 GGWRGALGFWALLALLALLIWLP  184 (395)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhh
Confidence            48999999999999888887554

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.49  E-value=9.8e-13  Score=111.80  Aligned_cols=160  Identities=13%  Similarity=-0.002  Sum_probs=102.4

Q ss_pred             HHHHHhhccccc-cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH--h--hhHHHH
Q psy6455          44 ITVLSFVLPSAQ-CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS--V--AQYYGV  118 (249)
Q Consensus        44 ~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~--~--~~~~~~  118 (249)
                      .+....++|.+. +++|.+..+.++..+...++..+++++.|+++||+|||+.++++.++.++......  .  .++...
T Consensus       259 ~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (432)
T PRK10406        259 FYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYA  338 (432)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            344455566654 56888888888888888888899999999999999999988776655433332211  1  122222


Q ss_pred             HHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHH-HHHHHHHHHHHHHHHhcccccccCcccccchhHHHHH
Q psy6455         119 FLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMF-WTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVT  197 (249)
Q Consensus       119 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~  197 (249)
                      .+....+.+++.+...+....+++|++|++.|++++|+.+.. ..+.+...|.+.+.+..           ...|...++
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~-----------~g~~~~~~~  407 (432)
T PRK10406        339 AFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS-----------IGMETAFFW  407 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHH-----------hCCCcHHHH
Confidence            222222222333333455667889999999999999996654 44445557787776531           123555666


Q ss_pred             HHHHHHHHHHHHhhccc
Q psy6455         198 LVSVPSILLALWLTRFP  214 (249)
Q Consensus       198 ~~~~~~~~~~~~~~~~~  214 (249)
                      +.++..++..+..++++
T Consensus       408 ~~~~~~~i~~~~~~~l~  424 (432)
T PRK10406        408 YVTLMAVVAFLVSLMLH  424 (432)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            66666666666555443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.48  E-value=1.1e-12  Score=109.97  Aligned_cols=149  Identities=14%  Similarity=-0.022  Sum_probs=111.0

Q ss_pred             hccccccccCCCCcchhhHHHHhH-HHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh------hhHHHHHHHH
Q psy6455          50 VLPSAQCDFGMTSSDKGWLNAAPM-LGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV------AQYYGVFLAL  122 (249)
Q Consensus        50 ~~~~~~~~~~~s~~~~~~~~~~~~-i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~------~~~~~~l~~~  122 (249)
                      +.+.+.+|.|.++++.+++..... +...++.++.|++.||+|+|+.+..+.++..+..+....      .++...+...
T Consensus       230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (390)
T TIGR02718       230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC  309 (390)
T ss_pred             HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence            344555678999999999888775 466778899999999999999988877665333222211      1223333444


Q ss_pred             HHHHHhhhccccccccccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHH
Q psy6455         123 RFINGFAVTGTLGICFPYLGEFQPT-AYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSV  201 (249)
Q Consensus       123 ~~l~G~~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~  201 (249)
                      ..+.+++.+...+...+.+.+..++ +++++.+++.+....+|..++|.+++.+.           +..|++..|...++
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~-----------~~~G~~~~f~~~~~  378 (390)
T TIGR02718       310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLT-----------DRFGYAGGFLSGTV  378 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHccHHHHHHHHH
Confidence            4555666677777777777777766 88999999999999999999999999997           44588888888877


Q ss_pred             HHHHHHHH
Q psy6455         202 PSILLALW  209 (249)
Q Consensus       202 ~~~~~~~~  209 (249)
                      +.++..+.
T Consensus       379 ~~l~a~~~  386 (390)
T TIGR02718       379 LAVLAILL  386 (390)
T ss_pred             HHHHHHHH
Confidence            77666554

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.45  E-value=4.1e-12  Score=107.08  Aligned_cols=129  Identities=11%  Similarity=-0.048  Sum_probs=102.3

Q ss_pred             Hhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh-----hHHHHHHH
Q psy6455          48 SFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA-----QYYGVFLA  121 (249)
Q Consensus        48 ~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~l~~  121 (249)
                      ....|.+ .+++|.++.+.++......++..++.++.|+++||+|+|+.+.++.++..++.++..+.     .+.+.+++
T Consensus       235 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  314 (406)
T PRK15402        235 IALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTA  314 (406)
T ss_pred             HHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHH
Confidence            3334544 45689998888988888888899999999999999999999998888777776665543     24566677


Q ss_pred             HHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455         122 LRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP  177 (249)
Q Consensus       122 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~  177 (249)
                      ..++.|++.+...+........ .++++|++..+..+....+|..+|+.+.+.+.+
T Consensus       315 ~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~  369 (406)
T PRK15402        315 GLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL  369 (406)
T ss_pred             HHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            8888999888777666555443 345889999999999999999999999999863

>PRK09848 glucuronide transporter; Provisional

Probab=99.44  E-value=1.4e-11  Score=105.27  Aligned_cols=135  Identities=10%  Similarity=-0.027  Sum_probs=105.0

Q ss_pred             HHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhh--HHHHHH
Q psy6455          44 ITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ--YYGVFL  120 (249)
Q Consensus        44 ~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~  120 (249)
                      ........|++.++ +|.++...++......++..++.++++++.||+|+|+.+.++.++.+++.+...+.+  +.+.+.
T Consensus       244 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~  323 (448)
T PRK09848        244 TFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVAL  323 (448)
T ss_pred             HHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHH
Confidence            33444456665544 776655555555555677888999999999999999999999988888777666543  566677


Q ss_pred             HHHHHHHhhhcccccccccccccccccc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy6455         121 ALRFINGFAVTGTLGICFPYLGEFQPTA-------YREKVLCWLEMFWTGGIIVLPAVAWLLIPL  178 (249)
Q Consensus       121 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~  178 (249)
                      +..++.|+|.+...+...++.+|..|.+       ++|...++++....+|..+++.+.+.+.+.
T Consensus       324 ~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        324 VALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788899999999999999999988754       358889999999999999999998887644

>KOG0569|consensus

Probab=99.43  E-value=1.1e-11  Score=104.63  Aligned_cols=180  Identities=16%  Similarity=0.073  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q psy6455          27 YILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC  106 (249)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~  106 (249)
                      +...+.+.+....+.-....+..+...+.++-|++..++.+++....+...+.++++..+.||+|||+.++.+..+..+.
T Consensus       269 ~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~  348 (485)
T KOG0569|consen  269 RPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVA  348 (485)
T ss_pred             HHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            34333333333434444455566667788889999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHhhh---H-H--H---HHHHHHHHHHhhhccc-ccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455         107 GIASSVAQ---Y-Y--G---VFLALRFINGFAVTGT-LGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI  176 (249)
Q Consensus       107 ~~~~~~~~---~-~--~---~l~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~  176 (249)
                      .+++....   + .  |   ..+++.++..++.+.. -|..+-+.+|++|++.|..++++......+...+-.+.-..+.
T Consensus       349 ~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~  428 (485)
T KOG0569|consen  349 LLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQ  428 (485)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77665431   1 1  1   2344455554444433 5777789999999999999999988887777777666655554


Q ss_pred             cccccccCcccccchhHHHHHHHHHHHHHHHHH-hhcccCChh
Q psy6455         177 PLNLRIETPYFLYSSWNLFVTLVSVPSILLALW-LTRFPESPK  218 (249)
Q Consensus       177 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~  218 (249)
                      +.           .|- +.|+...++..+..+. +..+||++.
T Consensus       429 ~~-----------~g~-~~filF~i~~~~~~i~~~~~lPETkg  459 (485)
T KOG0569|consen  429 NV-----------IGP-YVFILFVIPLAIFLIYLYRYLPETKG  459 (485)
T ss_pred             HH-----------hcc-hhhHHHHHHHHHHHHHHHHhCcccCC
Confidence            22           232 5666666666666555 555899853

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.42  E-value=4.1e-12  Score=106.95  Aligned_cols=155  Identities=12%  Similarity=0.011  Sum_probs=115.7

Q ss_pred             HhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy6455          48 SFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD-TQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN  126 (249)
Q Consensus        48 ~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~d-r~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~  126 (249)
                      ...+|.+.++.+.++.+.+++.+...++..++..+.+++.| |++.++.+..+.++..++.++..+.++.+.+.+..++.
T Consensus       228 ~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~  307 (400)
T PRK11646        228 MLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLF  307 (400)
T ss_pred             HHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            34567766665557788888888877777666666666665 56767777788888888877777788887777777888


Q ss_pred             HhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHH
Q psy6455         127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILL  206 (249)
Q Consensus       127 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  206 (249)
                      |++.+...+...+++.|..|+++|++..++.+....+|..+||.+++++.+...       ........+...++..++.
T Consensus       308 ~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~-------~~~~~~~~~~~~~~~~~~~  380 (400)
T PRK11646        308 YIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK-------ALNQPELPWMMLGIIGLIT  380 (400)
T ss_pred             HHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh-------hcCCcchHHHHHHHHHHHH
Confidence            888888888889999999999999999999999999999999999999975430       0011234455555555555


Q ss_pred             HHH
Q psy6455         207 ALW  209 (249)
Q Consensus       207 ~~~  209 (249)
                      .+.
T Consensus       381 ~~~  383 (400)
T PRK11646        381 LLA  383 (400)
T ss_pred             HHH
Confidence            444

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.42  E-value=4.8e-12  Score=106.58  Aligned_cols=147  Identities=12%  Similarity=0.086  Sum_probs=104.8

Q ss_pred             cccccccCCCCcchhhHHHHhH-HHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHH---Hhh-hHHHHHHHHH---
Q psy6455          52 PSAQCDFGMTSSDKGWLNAAPM-LGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIAS---SVA-QYYGVFLALR---  123 (249)
Q Consensus        52 ~~~~~~~~~s~~~~~~~~~~~~-i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~-~~~~~l~~~~---  123 (249)
                      +.+.+++|.++++.+++..... ++..++.+++|++.||+|+|+.+..+.++..+..+..   ++. ++.+.+.+..   
T Consensus       234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  313 (402)
T PRK11902        234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE  313 (402)
T ss_pred             HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            3455678999999999886654 5688999999999999999998877776665554332   333 3455555444   


Q ss_pred             -HHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHH
Q psy6455         124 -FINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVP  202 (249)
Q Consensus       124 -~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~  202 (249)
                       +..|++.+...+....++.+.+|.+++    ++++....++..+++.+++.+.           +..||+..|.+.+++
T Consensus       314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~-----------~~~G~~~~f~~~~~~  378 (402)
T PRK11902        314 NLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLV-----------EAYGWPGFYLMTVVI  378 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHH-----------HHhChHHHHHHHHHH
Confidence             345666666677777788888776554    4455455667766667888887           557999999999888


Q ss_pred             HHHHHHHhhcc
Q psy6455         203 SILLALWLTRF  213 (249)
Q Consensus       203 ~~~~~~~~~~~  213 (249)
                      +++..++....
T Consensus       379 ~~~~~~~~~~~  389 (402)
T PRK11902        379 ALPGLALLWLM  389 (402)
T ss_pred             HHHHHHHHHHH
Confidence            88876665444

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.42  E-value=3.1e-12  Score=108.13  Aligned_cols=161  Identities=15%  Similarity=0.136  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHHHHHhhcccccccc--CCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHH-HHHHHHHHHHHHHH
Q psy6455          33 GGLLYAYAAISITVLSFVLPSAQCDF--GMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKIT-LIGALLVDGLCGIA  109 (249)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~-~~~~~~~~~i~~~~  109 (249)
                      ..+.+++.......+...+|.+.+++  +.+..+.+++.....++..++.+++|+++||+++|+. .+...++..++..+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~  326 (412)
T TIGR02332       247 YTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLL  326 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHH
Confidence            33444444455556667788877764  5677788999999999999999999999999997774 33444344433322


Q ss_pred             HHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccc
Q psy6455         110 SSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLY  189 (249)
Q Consensus       110 ~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~  189 (249)
                      ....++.....++-++.+++.....+.......|.+|+++|+++.++.+....+|..++|.+.+.+.+..          
T Consensus       327 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~----------  396 (412)
T TIGR02332       327 ASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDAT----------  396 (412)
T ss_pred             HHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccC----------
Confidence            2222222222222223333333333444566678899999999999999999999999999998887432          


Q ss_pred             chhHHHHHHHHHHH
Q psy6455         190 SSWNLFVTLVSVPS  203 (249)
Q Consensus       190 ~~w~~~~~~~~~~~  203 (249)
                      .+|++.+.+.++..
T Consensus       397 g~~~~~~~~~~~~~  410 (412)
T TIGR02332       397 GSFNSGLWFVAALL  410 (412)
T ss_pred             CCCchhHHHHHHHH
Confidence            35888887766544

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10054 putative transporter; Provisional

Probab=99.42  E-value=4.1e-12  Score=106.78  Aligned_cols=142  Identities=7%  Similarity=-0.061  Sum_probs=112.4

Q ss_pred             cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhhhcccc
Q psy6455          56 CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA-QYYGVFLALRFINGFAVTGTL  134 (249)
Q Consensus        56 ~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~~~l~G~~~g~~~  134 (249)
                      .+.+.+....+++.....+.....+++.|++.||+++|+.+..+.++..++.....+. ++.+.+.+..++.|++.+...
T Consensus       237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  316 (395)
T PRK10054        237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA  316 (395)
T ss_pred             cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence            3456666677888888888778888999999999999999999988888877666654 567767778889999988878


Q ss_pred             cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH
Q psy6455         135 GICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW  209 (249)
Q Consensus       135 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  209 (249)
                      +.....+.+..|++.|++..+..+ ...+|..+||.+++.+.           +..+....|++.+....+..+.
T Consensus       317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~-----------~~~g~~~~~~~~~~~~~~~~~~  379 (395)
T PRK10054        317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVIL-----------TTLPPWSLFVILALAIVAAWLL  379 (395)
T ss_pred             hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHH-----------HHcChhhHHHHHHHHHHHHHHH
Confidence            888889999999999999988765 45589999999999998           4456667777665555444444

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.42  E-value=7e-12  Score=103.93  Aligned_cols=167  Identities=15%  Similarity=0.131  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHH
Q psy6455          38 AYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYG  117 (249)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~  117 (249)
                      ....++.. ...+...+.++-+.+....|.+.+...+.-++...+..++.+|+|.|+.++++.++.++=.++++++++.+
T Consensus       235 ~Y~vfdqq-f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~  313 (412)
T PF01306_consen  235 IYDVFDQQ-FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPW  313 (412)
T ss_dssp             HHHHHHHH-HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHH
T ss_pred             HHHHHHHH-HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchH
Confidence            33444433 33333334445555566789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcccccccccccccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHH
Q psy6455         118 VFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCW-LEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFV  196 (249)
Q Consensus       118 ~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~  196 (249)
                      .+.+.+.+.|+-.+........|+++.+|+|..++...+ ++....+|..+.+.++|.+.           |+.|.+..|
T Consensus       314 ~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly-----------d~~G~~~ty  382 (412)
T PF01306_consen  314 VISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY-----------DRIGFQHTY  382 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH-----------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH-----------hhcCcHHHH
Confidence            999999999999999999999999999999998888888 57889999999999999998           667999999


Q ss_pred             HHHHHHHHHHHHH-hhcccCC
Q psy6455         197 TLVSVPSILLALW-LTRFPES  216 (249)
Q Consensus       197 ~~~~~~~~~~~~~-~~~~~~~  216 (249)
                      ++.+.+.++..+. .+.++++
T Consensus       383 limg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  383 LIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHS--S
T ss_pred             HHHHHHHHHHHHHheeeecCC
Confidence            9888887777666 4445543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.42  E-value=5.1e-12  Score=119.50  Aligned_cols=149  Identities=19%  Similarity=0.146  Sum_probs=121.7

Q ss_pred             Hhhccc-cccccCCCCc-chhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy6455          48 SFVLPS-AQCDFGMTSS-DKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFI  125 (249)
Q Consensus        48 ~~~~~~-~~~~~~~s~~-~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l  125 (249)
                      ...+|. +.+.+|.+.. ..+++.+...++..+++++.|+++||+++++.+.++.++.+++.++..+..+.+.+++..++
T Consensus       252 ~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (1146)
T PRK08633        252 QANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFL  331 (1146)
T ss_pred             HHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            334444 4456899988 89999999999999999999999999999999988888888888888777888888888999


Q ss_pred             HHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHH
Q psy6455         126 NGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSIL  205 (249)
Q Consensus       126 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  205 (249)
                      .|++.+...+...+++.+..|++.|++++++.++...+|.++++.+++.+....          .++...+++.+.+.++
T Consensus       332 ~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        332 FGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLG----------LSPAGLFYLIALVTLI  401 (1146)
T ss_pred             HHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhc----------cCHHHHHHHHHHHHHH
Confidence            999999888888999999999999999999999999999988888877764211          3455556555554443


Q ss_pred             H
Q psy6455         206 L  206 (249)
Q Consensus       206 ~  206 (249)
                      .
T Consensus       402 ~  402 (1146)
T PRK08633        402 G  402 (1146)
T ss_pred             H
Confidence            3

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.41  E-value=1.8e-11  Score=102.86  Aligned_cols=147  Identities=10%  Similarity=-0.091  Sum_probs=112.9

Q ss_pred             hccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy6455          50 VLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFA  129 (249)
Q Consensus        50 ~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~  129 (249)
                      ..|.+.+++|.+..+.+++...+.++..++.++.+++.||.+++..+....+......++....++.+.+.+..++.|++
T Consensus       239 ~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~  318 (394)
T PRK10213        239 IRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLT  318 (394)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34666778899999999999999999999999999999996544444433333444444445566777778888999999


Q ss_pred             hcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHH
Q psy6455         130 VTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLAL  208 (249)
Q Consensus       130 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  208 (249)
                      .+...+...+++.+..| +++++..+.......+|..+|+.+++++.           +..|++..+...+++.++..+
T Consensus       319 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~-----------~~~g~~~~~~~~~~~~~~~~~  385 (394)
T PRK10213        319 FALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYAL-----------DNIGLTSPLMLSGTLMLLTAL  385 (394)
T ss_pred             HHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hccChhhHHHHHHHHHHHHHH
Confidence            98888888888998887 55677788888888999999999999998           445777777777665544443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.41  E-value=8.5e-12  Score=101.37  Aligned_cols=154  Identities=12%  Similarity=0.026  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcccccc---ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH
Q psy6455          33 GGLLYAYAAISITVLSFVLPSAQC---DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA  109 (249)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  109 (249)
                      ..+..++.......+..+.+.+.+   .+|+++.+.++..+.+..+..+|.++.+++.||+|+|+.+.++.++.+++.++
T Consensus       145 ~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l  224 (310)
T TIGR01272       145 GALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIG  224 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            333444433334444444555443   36899999999999999999999999999999999999998888888877765


Q ss_pred             HHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccc
Q psy6455         110 SSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLY  189 (249)
Q Consensus       110 ~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~  189 (249)
                      ....++... ....++.|++.+..+|...+...+..|++ .+.+.++. ....+|+.+.|.+.|.+.           |.
T Consensus       225 ~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~la-----------d~  290 (310)
T TIGR01272       225 AALTHGYVA-MWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLA-----------DC  290 (310)
T ss_pred             HHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHH-----------Hh
Confidence            555444332 34556889999999999999888888754 45666665 456689999999999987           33


Q ss_pred             chhHHHHHHHH
Q psy6455         190 SSWNLFVTLVS  200 (249)
Q Consensus       190 ~~w~~~~~~~~  200 (249)
                      .+.+..+++..
T Consensus       291 ~g~~~a~~v~~  301 (310)
T TIGR01272       291 LGIQLAFALPV  301 (310)
T ss_pred             ccchHHHHHHH
Confidence            46677766443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.40  E-value=1.9e-11  Score=102.33  Aligned_cols=150  Identities=13%  Similarity=0.020  Sum_probs=108.5

Q ss_pred             ccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhh
Q psy6455          51 LPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV-AQYYGVFLALRFINGFA  129 (249)
Q Consensus        51 ~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~l~G~~  129 (249)
                      .|.+.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+...+..++.+++
T Consensus       223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g  302 (382)
T PRK10091        223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAG  302 (382)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            34555568999999999999999999999999999999999999999888887777655543 44555555566666665


Q ss_pred             hcccccccc-cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHH
Q psy6455         130 VTGTLGICF-PYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLAL  208 (249)
Q Consensus       130 ~g~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  208 (249)
                      .....+... ....+..+++.++.+  ..+....+|..+||.+++++.+..          .+|++.+.+.++..++...
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~----------~~~~~~~~~~~~~~~~~~~  370 (382)
T PRK10091        303 LFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLG----------LAYNYVALPAALLSFAAMS  370 (382)
T ss_pred             HHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcc----------cCcchHHHHHHHHHHHHHH
Confidence            544444333 334444444555544  346677899999999999987432          5788888888777766655


Q ss_pred             Hhhc
Q psy6455         209 WLTR  212 (249)
Q Consensus       209 ~~~~  212 (249)
                      ....
T Consensus       371 ~~~~  374 (382)
T PRK10091        371 SLLL  374 (382)
T ss_pred             HHHH
Confidence            5443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.39  E-value=2.5e-12  Score=105.05  Aligned_cols=152  Identities=16%  Similarity=0.179  Sum_probs=132.7

Q ss_pred             ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccc
Q psy6455          55 QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTL  134 (249)
Q Consensus        55 ~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~  134 (249)
                      ..++|++..+..++....++..++|++++|+|.||+|-|+++..+.++..+.++...+......+.+.-++.|...|..+
T Consensus       280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~q  359 (438)
T COG2270         280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQ  359 (438)
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence            34899999999999999999999999999999999999999999999888877766665555555666788999999999


Q ss_pred             cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhccc
Q psy6455         135 GICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFP  214 (249)
Q Consensus       135 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  214 (249)
                      +..-++.+++.|+++-++..|+++.....++.+||.+.+.+.+..          .+-|..+....++.++..+.+.++|
T Consensus       360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iT----------g~~r~g~~~i~vll~iGl~~L~~v~  429 (438)
T COG2270         360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQIT----------GSSRAGVLSIIVLLLIGLLLLLRVK  429 (438)
T ss_pred             HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHh----------cchhhHHHHHHHHHHhhHhhEEeec
Confidence            999999999999999999999999999999999999999998765          4567777777788888877777776


Q ss_pred             CC
Q psy6455         215 ES  216 (249)
Q Consensus       215 ~~  216 (249)
                      ++
T Consensus       430 ~~  431 (438)
T COG2270         430 VP  431 (438)
T ss_pred             CC
Confidence            54

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.39  E-value=3.2e-11  Score=100.58  Aligned_cols=126  Identities=18%  Similarity=0.187  Sum_probs=96.6

Q ss_pred             HHHhhccccc-cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh-----hHHHHH
Q psy6455          46 VLSFVLPSAQ-CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA-----QYYGVF  119 (249)
Q Consensus        46 ~~~~~~~~~~-~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~l  119 (249)
                      ......|.+. +++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++..++...     ++...+
T Consensus       224 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (385)
T TIGR00710       224 AFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMI  303 (385)
T ss_pred             HHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence            3344456544 4689999999999999999999999999999999999999888877777766555443     234445


Q ss_pred             HHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHH-HHHHHHHHHH
Q psy6455         120 LALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWT-GGIIVLPAVA  172 (249)
Q Consensus       120 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~l~  172 (249)
                      ....++.|++.+...+.......|..| ++|+++.++.+.... .|.+.++.++
T Consensus       304 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       304 IGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            556778888888888888888888886 678999999876654 4555556554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.39  E-value=9.6e-12  Score=104.19  Aligned_cols=170  Identities=14%  Similarity=0.111  Sum_probs=128.8

Q ss_pred             HHHHHHHHhhccccccccC-CCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh-hHHHH
Q psy6455          41 AISITVLSFVLPSAQCDFG-MTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA-QYYGV  118 (249)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~  118 (249)
                      +........+.+.+.++.| .+....+.+.+...++=.+.-.+.+++..|+|.|++++++.+..++=..+.+.. ++.+.
T Consensus       220 ~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~  299 (400)
T PF03825_consen  220 GISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPF  299 (400)
T ss_pred             HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence            3334444444555566766 677777887788788888888999999999999999999999999988888877 44443


Q ss_pred             HH----HHHHHHHhhhcccccccccccccccccchhHHHHHHHHH-HHHHHHHHHHHHHHHHhcccccccCcccccchhH
Q psy6455         119 FL----ALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEM-FWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWN  193 (249)
Q Consensus       119 l~----~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~  193 (249)
                      ..    +...+.|++.+........++.+..|++.|++++++++. ..++|..+|..++|++.+..+..     ....|.
T Consensus       300 ~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~-----~~~~~~  374 (400)
T PF03825_consen  300 IVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR-----GMFDWS  374 (400)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch-----hhhhHH
Confidence            33    334569999999999999999999999999999999775 57899999999999998654211     123466


Q ss_pred             HHHHHHHHHHHHHHHHh-hcccC
Q psy6455         194 LFVTLVSVPSILLALWL-TRFPE  215 (249)
Q Consensus       194 ~~~~~~~~~~~~~~~~~-~~~~~  215 (249)
                      ..+.+.+++.++..++. ++++|
T Consensus       375 ~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  375 AVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccC
Confidence            67777777666665553 33444

>KOG2504|consensus

Probab=99.39  E-value=1.2e-12  Score=112.31  Aligned_cols=176  Identities=21%  Similarity=0.264  Sum_probs=152.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcc--hhHHHHHHHHHHHHH
Q psy6455          29 LVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQG--RKITLIGALLVDGLC  106 (249)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~i~  106 (249)
                      .++...+...+..........++|.+.++.+.+..+.+.+.++..+...++.++.|+++|+..  ++.+..++.++.+++
T Consensus       299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~  378 (509)
T KOG2504|consen  299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLA  378 (509)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHH
Confidence            344555555556666777778888888999999999999999999999999999999999988  455777788888888


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc
Q psy6455         107 GIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPY  186 (249)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~  186 (249)
                      ...++++++++.++..-.+.|++.|.........+.|+.+.++-..+.|+.....+++..+||.+++.+.+..       
T Consensus       379 ~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t-------  451 (509)
T KOG2504|consen  379 RLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT-------  451 (509)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc-------
Confidence            8888999999999999999999999988888889999999999999999999999999999999999887544       


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhhccc
Q psy6455         187 FLYSSWNLFVTLVSVPSILLALWLTRFP  214 (249)
Q Consensus       187 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~  214 (249)
                         .+|...|+..++..++..++++..+
T Consensus       452 ---g~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  452 ---GNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             ---CCeeeehhhcChHHHHHHHHHHHhH
Confidence               4588889999999888888776665

>TIGR00788 fbt folate/biopterin transporter

Probab=99.38  E-value=3.9e-12  Score=109.06  Aligned_cols=175  Identities=13%  Similarity=0.027  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-hhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcc-----hhHHHHHHHHH
Q psy6455          29 LVIFGGLLYAYAAISITVLS-FVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQG-----RKITLIGALLV  102 (249)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~G-----rr~~~~~~~~~  102 (249)
                      .+.+....++..+.. .... ...+.+.+++|+|.++.+...+...+...+-.+ +|.++||++     ||+.++++.++
T Consensus        27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence            444555567777777 4444 444556667999999999999999999988555 999999998     77777777766


Q ss_pred             H-HHHHHHHHhhhHH-HHHHHHHHHHHhhhcccccccccccccccccchhHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Q psy6455         103 D-GLCGIASSVAQYY-GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCW---LEMFWTGGIIVLPAVAWLLIP  177 (249)
Q Consensus       103 ~-~i~~~~~~~~~~~-~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~l~~~l~~  177 (249)
                      . .++....+..++. ....+..++.+++.+......-++..|..+ +++....+.   ......+|..+++.+++.+. 
T Consensus       105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~-  182 (468)
T TIGR00788       105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL-  182 (468)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH-
Confidence            6 3443334433443 344447889999988888889999999998 555443333   33334589999999999987 


Q ss_pred             ccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCCh
Q psy6455         178 LNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESP  217 (249)
Q Consensus       178 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  217 (249)
                                +..+|+..|++.+++.++..+..++++|++
T Consensus       183 ----------~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~  212 (468)
T TIGR00788       183 ----------DKTLTRILFLITAALLLLQLFVSNLSKERR  212 (468)
T ss_pred             ----------HhcCcchHHHHHHHHHHHHHHHHHhccccc
Confidence                      445899999999888888866667778753

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.38  E-value=5.1e-12  Score=107.63  Aligned_cols=161  Identities=12%  Similarity=0.049  Sum_probs=105.0

Q ss_pred             HHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH---HHHHHHHh--hhHHHH
Q psy6455          45 TVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDG---LCGIASSV--AQYYGV  118 (249)
Q Consensus        45 ~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~---i~~~~~~~--~~~~~~  118 (249)
                      +....+.|.+.++ .|.+..+.+++...+.++..++.+++|+++||+++++....+..+..   ++.+....  ..+.+.
T Consensus       268 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (438)
T TIGR00712       268 YGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLV  347 (438)
T ss_pred             HHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence            3444556665554 78999999999999999999999999999999975432222322221   11111111  123333


Q ss_pred             HHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHH-HHHHHHHHHHHhcccccccCcccccchhHHHHH
Q psy6455         119 FLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGG-IIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVT  197 (249)
Q Consensus       119 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~  197 (249)
                      .....++.|++.............|.+|++.|+++.++.+....+| ..++|.+.+.+.           +..+|...++
T Consensus       348 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~-----------~~~g~~~~~~  416 (438)
T TIGR00712       348 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV-----------DFFGWDGGFM  416 (438)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHH-----------HhccchHHHH
Confidence            3344455555433222222345779999999999999998777766 578999999987           4457888888


Q ss_pred             HHHHHHHHHHHH-hhcccCC
Q psy6455         198 LVSVPSILLALW-LTRFPES  216 (249)
Q Consensus       198 ~~~~~~~~~~~~-~~~~~~~  216 (249)
                      +.++..+++.+. ++.++|.
T Consensus       417 ~~~~~~~~~~~~~~~~~~~~  436 (438)
T TIGR00712       417 VMIGGSILAVILLIVVMIGE  436 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhhc
Confidence            877766666555 3334553

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.38  E-value=1.5e-10  Score=99.57  Aligned_cols=137  Identities=8%  Similarity=-0.053  Sum_probs=103.3

Q ss_pred             HHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh-----hhHH
Q psy6455          42 ISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV-----AQYY  116 (249)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----~~~~  116 (249)
                      ......+...+++.+...-+....+++.+...++..++.+++++++||+|+|+.++++.++.+++.+...+     .++.
T Consensus       245 ~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (473)
T PRK10429        245 IASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNA  324 (473)
T ss_pred             HHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhH
Confidence            34444555556666654435566677777777889999999999999999999999888776665554432     2456


Q ss_pred             HHHHHHHHHHHhhhcccccccccccccccc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy6455         117 GVFLALRFINGFAVTGTLGICFPYLGEFQP-------TAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL  178 (249)
Q Consensus       117 ~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~  178 (249)
                      +.+++..++.|++.+...+...++++|..+       .+..|...+......-+|..+++.+.+++.+.
T Consensus       325 ~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~  393 (473)
T PRK10429        325 LLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL  393 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777788899988888888999999966       33346678888888999999999999888654

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.37  E-value=1.4e-11  Score=105.78  Aligned_cols=176  Identities=15%  Similarity=0.123  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccc-cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHH--------HHHHH
Q psy6455          30 VIFGGLLYAYAAISITVLSFVLPSAQ-CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKIT--------LIGAL  100 (249)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~--------~~~~~  100 (249)
                      +....+..+...........++|.+. +.+|.+..+.++..+...++..++.++.|+++||+++|+.        +..+.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  342 (465)
T TIGR00894       263 VWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGI  342 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            34444455555555555666777765 4589999999999999999999999999999999875521        11111


Q ss_pred             HHH--HHHHHHHHh-hhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455         101 LVD--GLCGIASSV-AQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP  177 (249)
Q Consensus       101 ~~~--~i~~~~~~~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~  177 (249)
                      ...  .+..+.... ..+....++...+.+.+.+...+.......|..| +.+|...++.+....+|+.++|.+.+.+.+
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~  421 (465)
T TIGR00894       343 GGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILS  421 (465)
T ss_pred             HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeC
Confidence            111  111111111 2233444444555555555555555555667766 489999999999999999999999988864


Q ss_pred             ccccccCcccccchhHHHHHHHHHHHHHHHHHhhccc
Q psy6455         178 LNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFP  214 (249)
Q Consensus       178 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  214 (249)
                      ..        +..+|+..|.+.++..++..++....+
T Consensus       422 ~~--------~~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       422 QD--------SKNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             CC--------CchHHHHHHHHHHHHHHHHHHHeeeee
Confidence            32        224699999999888888877655543

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.37  E-value=1.4e-12  Score=108.53  Aligned_cols=174  Identities=15%  Similarity=0.077  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccc-cccc----cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc-chhHHHHHHHHHH
Q psy6455          30 VIFGGLLYAYAAISITVLSFVLPS-AQCD----FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ-GRKITLIGALLVD  103 (249)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~  103 (249)
                      +..+...-+..-+.++.+...+.. +..+    +|.|++++.-+.+.|..-.-+..+++||++||+ |+|+.++.|.++.
T Consensus        23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~  102 (498)
T COG3104          23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILM  102 (498)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            334445555555555555543332 3333    449988888888887777778899999999995 9999999999999


Q ss_pred             HHHHHHHHhhh--HHHHHHHHHHHHHhhhcccccccccccccccccch--hHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy6455         104 GLCGIASSVAQ--YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAY--REKVLCWLEMFWTGGIIVLPAVAWLLIPLN  179 (249)
Q Consensus       104 ~i~~~~~~~~~--~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  179 (249)
                      +++-++.+...  +...+.++..+.++|.|..=+....++.|.+|+++  |-.+.+++.++.++|+.++|.+.+++.   
T Consensus       103 ~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~---  179 (498)
T COG3104         103 AIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLA---  179 (498)
T ss_pred             HHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHH---
Confidence            99999998874  67888999999999999999999999999998754  566777888999999999999999998   


Q ss_pred             ccccCcccccchhHHHHHHHHHHHHHHHHHhhccc
Q psy6455         180 LRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFP  214 (249)
Q Consensus       180 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  214 (249)
                              +..+|+..|...++-..+.++.....+
T Consensus       180 --------~~~g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         180 --------INYGWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             --------HhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence                    556999999999998888888765544

>PRK09669 putative symporter YagG; Provisional

Probab=99.37  E-value=7e-12  Score=106.96  Aligned_cols=162  Identities=11%  Similarity=0.015  Sum_probs=114.7

Q ss_pred             ccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhh----cchhHH-HHHHHHHHHHHHHHHHhhh------HHHHH
Q psy6455          51 LPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT----QGRKIT-LIGALLVDGLCGIASSVAQ------YYGVF  119 (249)
Q Consensus        51 ~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr----~Grr~~-~~~~~~~~~i~~~~~~~~~------~~~~l  119 (249)
                      ..++.+++|++...+|.+.++..+..++..|+.|+++||    +||||. ++++.+..+++..+....+      ....+
T Consensus        33 ~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~  112 (444)
T PRK09669         33 AYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYA  112 (444)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence            344566799999999999999999999999999999998    788655 4456666666655444333      24555


Q ss_pred             HHHHHHHHhhhccccccccccccccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHH
Q psy6455         120 LALRFINGFAVTGTLGICFPYLGEFQ-PTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTL  198 (249)
Q Consensus       120 ~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~  198 (249)
                      .+..++.+.+......+..++.+|+. ++++|.+..++......+|..+++.+...+....+.    .....+|+..+.+
T Consensus       113 ~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~----~~~~~g~~~~~~i  188 (444)
T PRK09669        113 CVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGK----GDEQKGYFYAMMV  188 (444)
T ss_pred             HHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CchhhhHHHHHHH
Confidence            66666667666667777888999988 557899988888888888888877665544322110    0123589888888


Q ss_pred             HHHHHHHHHHHhhc-ccCC
Q psy6455         199 VSVPSILLALWLTR-FPES  216 (249)
Q Consensus       199 ~~~~~~~~~~~~~~-~~~~  216 (249)
                      .+++.++..+..++ .+|.
T Consensus       189 ~~ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        189 MGLLGVVLFFCCFFMTKER  207 (444)
T ss_pred             HHHHHHHHHHHHhCCeEEe
Confidence            88777666554333 4443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.37  E-value=2.8e-11  Score=101.70  Aligned_cols=122  Identities=14%  Similarity=0.065  Sum_probs=100.8

Q ss_pred             cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccc
Q psy6455          54 AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGT  133 (249)
Q Consensus        54 ~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~  133 (249)
                      ..+.+|.++.+.|++.+...++..+++++.+++.||.++|+++..+.. ..+......+.++++...+..++.|++.+..
T Consensus       232 ~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~  310 (393)
T PRK11195        232 APVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFF  310 (393)
T ss_pred             HHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Confidence            345589999999999999999999999999999999999988887754 3444444555667777777788899988888


Q ss_pred             ccccccccccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455         134 LGICFPYLGEFQPTAY-REKVLCWLEMFWTGGIIVLPAVAWLLI  176 (249)
Q Consensus       134 ~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~l~~~l~  176 (249)
                      .+...+.+.|..|++. +|++.++.+....++..++..+.+.+.
T Consensus       311 ~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~  354 (393)
T PRK11195        311 VVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV  354 (393)
T ss_pred             hhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            8888888888766654 799999999999999999999988774

>TIGR00896 CynX cyanate transporter

Probab=99.36  E-value=6.6e-12  Score=103.93  Aligned_cols=134  Identities=13%  Similarity=0.068  Sum_probs=103.3

Q ss_pred             HHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc-chhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy6455          44 ITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ-GRKITLIGALLVDGLCGIASSVAQYYGVFLAL  122 (249)
Q Consensus        44 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  122 (249)
                      ......++|.+.++.|.+..+.+.+.+...++..++.++.|+++||+ +||+.+.++.++.+++...+.+.++..... .
T Consensus       213 ~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  291 (355)
T TIGR00896       213 YYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-W  291 (355)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-H
Confidence            33444556777677899999999999999999999999999999999 566677777777777766666554333222 4


Q ss_pred             HHHHHhhhccccccccccccccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy6455         123 RFINGFAVTGTLGICFPYLGEFQ-PTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL  178 (249)
Q Consensus       123 ~~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~  178 (249)
                      .++.|++.|...+...+.+.+.. ++++++...++.+....++..++|.+.+++.+.
T Consensus       292 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~  348 (355)
T TIGR00896       292 ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI  348 (355)
T ss_pred             HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56789998888887777666544 456678888988888888999999999999754

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.36  E-value=2.7e-11  Score=100.73  Aligned_cols=164  Identities=18%  Similarity=0.170  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchh---HHHHH-HHHHHHHHHHHH
Q psy6455          35 LLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRK---ITLIG-ALLVDGLCGIAS  110 (249)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr---~~~~~-~~~~~~i~~~~~  110 (249)
                      +..++.....+.+...+|.+.++.|.+.. .+...+...+...++   .++++||.+||   +.... ..++.++.....
T Consensus       199 ~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~  274 (368)
T TIGR00903       199 AILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLAL  274 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            33444444555566678887777777754 555555555544444   47777776543   33332 333334444444


Q ss_pred             HhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccc
Q psy6455         111 SVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYS  190 (249)
Q Consensus       111 ~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~  190 (249)
                      .+..+....++...+.|++....++..+++.+|.+|++.|+++.++.+....+|+.++|.+.+.+.             .
T Consensus       275 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~-------------~  341 (368)
T TIGR00903       275 AFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI-------------S  341 (368)
T ss_pred             HHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh-------------c
Confidence            444444444555566777777777778889999999999999999999999999999999888775             2


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhcccC
Q psy6455         191 SWNLFVTLVSVPSILLALWLTRFPE  215 (249)
Q Consensus       191 ~w~~~~~~~~~~~~~~~~~~~~~~~  215 (249)
                      +.+..|.+.+++.++..+.....++
T Consensus       342 ~~~~~f~~~~~~~~i~~~~~~~~~~  366 (368)
T TIGR00903       342 SAEAYFTFLAILITIAFAIALLLPN  366 (368)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            5566777777777777766544444

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.36  E-value=3.2e-12  Score=106.08  Aligned_cols=134  Identities=18%  Similarity=0.067  Sum_probs=96.1

Q ss_pred             HHHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcch-hHH-HHHHH-HHHHHHHHHHHh--hhHH
Q psy6455          43 SITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGR-KIT-LIGAL-LVDGLCGIASSV--AQYY  116 (249)
Q Consensus        43 ~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Gr-r~~-~~~~~-~~~~i~~~~~~~--~~~~  116 (249)
                      .........|.+ .+++|.+..+.+++.+...++..++.++.|+++||..+ |+. +.... ....++......  ..+.
T Consensus       231 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (379)
T TIGR00881       231 VRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANP  310 (379)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhH
Confidence            334444455554 45689999999999999999999999999999998643 332 22221 222222222222  2344


Q ss_pred             HHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455         117 GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI  176 (249)
Q Consensus       117 ~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~  176 (249)
                      ....+..++.|+......+....+..|.+|+++|+++.++.+....+|..++|.+.+.+.
T Consensus       311 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  370 (379)
T TIGR00881       311 LMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLA  370 (379)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHH
Confidence            555566677777655556666778899999999999999999999999999999999997

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.36  E-value=9e-12  Score=96.93  Aligned_cols=147  Identities=14%  Similarity=0.084  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q psy6455          27 YILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC  106 (249)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~  106 (249)
                      |..+..........+ ..+..+.+-|.+.+.+|+|.++...+.+...+|..+ .++.|.+.|++|++.++++|.+...++
T Consensus         2 W~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~G   79 (250)
T PF06813_consen    2 WLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVG   79 (250)
T ss_pred             hhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            455555555554444 466778888899999999999999999999999986 588999999999999999999999999


Q ss_pred             HHHHHhh-------hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455         107 GIASSVA-------QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI  176 (249)
Q Consensus       107 ~~~~~~~-------~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~  176 (249)
                      ..+...+       .+.|.+.+..++.|.+.+...+.......+.|| ++||++.++.-...++++.+-..+...+.
T Consensus        80 Y~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen   80 YGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             HHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence            8876543       356777777778888766666666666778887 58999999999999999888777766664

>TIGR00901 2A0125 AmpG-related permease

Probab=99.35  E-value=9.5e-12  Score=102.99  Aligned_cols=121  Identities=9%  Similarity=0.080  Sum_probs=97.2

Q ss_pred             HHHHHHHhhccccccccCCCCcchhhHHHHhH-HHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh-------
Q psy6455          42 ISITVLSFVLPSAQCDFGMTSSDKGWLNAAPM-LGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA-------  113 (249)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-------  113 (249)
                      ..........|.+.+++|.+..+.+.+.+... ++..++.+++|++.||+|||+.++.+.++.++...+..+.       
T Consensus       223 ~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  302 (356)
T TIGR00901       223 LGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHD  302 (356)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            33444455566665668999999988887665 6778999999999999999999888888877766654442       


Q ss_pred             ----hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHH
Q psy6455         114 ----QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWT  162 (249)
Q Consensus       114 ----~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  162 (249)
                          ++.+.+....++.+++.+...+...+++.|.+|+++|++.+++.+...+
T Consensus       303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       303 GITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence                3456777788899999999999999999999999999999999876643

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.34  E-value=9.4e-12  Score=107.16  Aligned_cols=137  Identities=12%  Similarity=0.015  Sum_probs=113.4

Q ss_pred             HHHHHHHHHhhcccccc-ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh----hh
Q psy6455          40 AAISITVLSFVLPSAQC-DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV----AQ  114 (249)
Q Consensus        40 ~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~----~~  114 (249)
                      ..+.......++|.+.+ .+|.++.+.++......++..++.++.|++.||+|||+.+.++.++.+++..+..+    ..
T Consensus       267 ~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  346 (485)
T TIGR00711       267 LGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDT  346 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence            33344444555666554 48999999999999999999999999999999999999999998888888776652    12


Q ss_pred             HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455         115 YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI  176 (249)
Q Consensus       115 ~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~  176 (249)
                      +.+.+....++.|++.+...+.......+..|+++|+++.++.+....+|..+|+.+.+.+.
T Consensus       347 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~  408 (485)
T TIGR00711       347 PFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTIL  408 (485)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666677888999988887777777888899999999999999999999999999988886

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.34  E-value=3.9e-11  Score=96.68  Aligned_cols=182  Identities=18%  Similarity=0.108  Sum_probs=122.3

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q psy6455          22 YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALL  101 (249)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~  101 (249)
                      +++.++.-+.+-.+...    ....-+++.-.+.+++|.+..+++.+........++..++.|.++||+|||+..++..+
T Consensus        32 f~~Fqr~yl~vY~La~~----aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~ci  107 (354)
T PF05631_consen   32 FRRFQRKYLLVYLLAMA----ADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCI  107 (354)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            34444444433333333    23334444444567899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccc-cc----cccchhHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy6455         102 VDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLG-EF----QPTAYREKVLCWLE-MFWTGGIIVLPAVAWLL  175 (249)
Q Consensus       102 ~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~-~~----~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l  175 (249)
                      +..++++ +-..++++.++++|++.|++....+..--++.. |.    +|++..+.-.+... ..+++-.+++..++.++
T Consensus       108 ly~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l  186 (354)
T PF05631_consen  108 LYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVL  186 (354)
T ss_pred             HHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence            9998886 445688999999999999998888877766543 43    22222233333222 22344455555666665


Q ss_pred             hcccccccCcccccchhHHHHHHHHHHHHHHHHHhhc-ccCCh
Q psy6455         176 IPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTR-FPESP  217 (249)
Q Consensus       176 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~  217 (249)
                      .+..         ..+-..+|.....+.+++.+++.. .+|+.
T Consensus       187 ~~~~---------~~g~vaPF~~a~~~l~~~~~~I~~~W~ENy  220 (354)
T PF05631_consen  187 ADWF---------GFGPVAPFDAAIVLLAVAAVLILKTWPENY  220 (354)
T ss_pred             HHHh---------CCCCcchHHHHHHHHHHHHHHHHhcccccC
Confidence            5322         123467788777777777666543 56653

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.34  E-value=3.1e-11  Score=98.59  Aligned_cols=166  Identities=17%  Similarity=0.089  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh-
Q psy6455          36 LYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA-  113 (249)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-  113 (249)
                      .++........++..+|.+ .++|+.++.+.+.+...+.+...+..+.+|+++||+|.+|+..+.....+++..+.++. 
T Consensus       226 lY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~  305 (417)
T COG2223         226 LYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFL  305 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccc
Confidence            3333333445556666664 45699999999999999999999999999999999999999999999999888877765 


Q ss_pred             ------hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccc
Q psy6455         114 ------QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYF  187 (249)
Q Consensus       114 ------~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~  187 (249)
                            .+....++..+..+++.|.....++.++..++|+ +-|.+.++.....++|+..-|...+...+..        
T Consensus       306 ~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t--------  376 (417)
T COG2223         306 TGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT--------  376 (417)
T ss_pred             cccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhc--------
Confidence                  3455555556666666666677788888888874 6788999999999999988888888776443        


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455         188 LYSSWNLFVTLVSVPSILLALWLTR  212 (249)
Q Consensus       188 ~~~~w~~~~~~~~~~~~~~~~~~~~  212 (249)
                        ..+...|++.....+++.++.+.
T Consensus       377 --g~~~~~f~~~~~~~~~a~v~~~~  399 (417)
T COG2223         377 --GSYTGAFMLLLAFYLVALVLTWA  399 (417)
T ss_pred             --ccHHHHHHHHHHHHHHHHHHHHH
Confidence              46888898888888888776544

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.33  E-value=1.5e-11  Score=116.36  Aligned_cols=152  Identities=17%  Similarity=0.121  Sum_probs=117.9

Q ss_pred             HHHHhhcccccc-ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh----------
Q psy6455          45 TVLSFVLPSAQC-DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA----------  113 (249)
Q Consensus        45 ~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----------  113 (249)
                      ..+...+|.+.+ .+|.+....+++.+.+.++..+++++.|+++|+.++++.+..+.++..++.+.+.+.          
T Consensus       242 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  321 (1140)
T PRK06814        242 AVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQ  321 (1140)
T ss_pred             HHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccccc
Confidence            334445666554 489999999999999999999999999999998887776666665555554433332          


Q ss_pred             ----------hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy6455         114 ----------QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE  183 (249)
Q Consensus       114 ----------~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~  183 (249)
                                ++.+.+.+..++.|++.+...+...+++.+.+|++.||+++|..++...+|..+++.+.+.+....    
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~----  397 (1140)
T PRK06814        322 LKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG----  397 (1140)
T ss_pred             ccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence                      566777888889999999888889999999999999999999999999999999999988885322    


Q ss_pred             CcccccchhHHHHHHHHHHHHHH
Q psy6455         184 TPYFLYSSWNLFVTLVSVPSILL  206 (249)
Q Consensus       184 ~~~~~~~~w~~~~~~~~~~~~~~  206 (249)
                            .++...+++.++..++.
T Consensus       398 ------~~~~~~~~~~~~~~~~~  414 (1140)
T PRK06814        398 ------FSIPWIILFIALANLIV  414 (1140)
T ss_pred             ------cCHHHHHHHHHHHHHHH
Confidence                  35555555554443333

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.32  E-value=8e-12  Score=102.06  Aligned_cols=174  Identities=17%  Similarity=0.118  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccc-cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc--chhHHHH-HHHHHH
Q psy6455          28 ILVIFGGLLYAYAAISITVLSFVLPSAQ-CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ--GRKITLI-GALLVD  103 (249)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~--Grr~~~~-~~~~~~  103 (249)
                      +.++.+.+.++......+.+.-..|.+. +..|.|..++.+..+.+-++...|++++|+++||+  |||.... +..++.
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i  331 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI  331 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            4556677777777888888888888755 45899999999999999999999999999999996  6776544 444444


Q ss_pred             HHHHHHHHhhh--HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHhcccc
Q psy6455         104 GLCGIASSVAQ--YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTG-GIIVLPAVAWLLIPLNL  180 (249)
Q Consensus       104 ~i~~~~~~~~~--~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l~~~~~  180 (249)
                      .++....-+++  |++...++.++.|+...+.+........|..|++.-|++.|+...+..+ |...+....+++.    
T Consensus       332 ~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~----  407 (448)
T COG2271         332 TASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIA----  407 (448)
T ss_pred             HHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeE----
Confidence            55555555554  4588888889999988888888888899999999999999999988887 8888888888876    


Q ss_pred             cccCcccccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455         181 RIETPYFLYSSWNLFVTLVSVPSILLALWLTR  212 (249)
Q Consensus       181 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  212 (249)
                             |..||...|++..+.++++.++...
T Consensus       408 -------d~~gW~g~Fi~~~~~a~l~~lll~~  432 (448)
T COG2271         408 -------DTWGWDGGFIVLSIAALLAILLLLP  432 (448)
T ss_pred             -------ecCCCcchHHHHHHHHHHHHHHHHH
Confidence                   4469999998888877777666433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.32  E-value=1.3e-11  Score=106.67  Aligned_cols=137  Identities=15%  Similarity=0.146  Sum_probs=113.4

Q ss_pred             HHHHHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh---hHH
Q psy6455          41 AISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA---QYY  116 (249)
Q Consensus        41 ~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---~~~  116 (249)
                      .........+.|.+ ++.+|.|+.+.++......++..++.++.|++.||+|+|+.+..+.++.+++.++....   ++.
T Consensus       272 ~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~  351 (495)
T PRK14995        272 MITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQ  351 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence            33344444555554 44589999999999999999999999999999999999999988888887776655432   345


Q ss_pred             HHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455         117 GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP  177 (249)
Q Consensus       117 ~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~  177 (249)
                      +...+..++.|++.|...+.....+.+..|+++++.+.+++++...+|..+|+.+.+.+.+
T Consensus       352 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        352 WQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566778899999998888888888999999999999999999999999999999888864

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.32  E-value=1.6e-10  Score=96.35  Aligned_cols=124  Identities=11%  Similarity=-0.042  Sum_probs=86.4

Q ss_pred             hhccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH---hh-hHHHHHHHHH
Q psy6455          49 FVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS---VA-QYYGVFLALR  123 (249)
Q Consensus        49 ~~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~~-~~~~~l~~~~  123 (249)
                      ...|. +.+++|.++.+.+++.....++..++.++.|++.||+|||+.+..+..+..+..+...   .. .+.+...++.
T Consensus       215 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (377)
T PRK11102        215 TAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGV  294 (377)
T ss_pred             HcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            33444 4455899999999999999999999999999999999999999888766544333222   22 2344444444


Q ss_pred             HHHHhhhcccccccccccccccccchhHHHHHHHHHH-HHHHHHHHHHHHH
Q psy6455         124 FINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMF-WTGGIIVLPAVAW  173 (249)
Q Consensus       124 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~l~~  173 (249)
                      .+.+.+.+.........+.|..| +.++++.++.+.. ..+|..+++.++.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        295 AAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44444445555555566777766 7899999986543 5677777776654

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.32  E-value=6.3e-11  Score=100.63  Aligned_cols=141  Identities=18%  Similarity=0.149  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhh--
Q psy6455          38 AYAAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ--  114 (249)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--  114 (249)
                      ++........+...+++.++ +|.+ ...+.+.....++..++.+++++++||+|+|+.+..+.++.+++.++..+.+  
T Consensus       235 ~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~  313 (428)
T PF13347_consen  235 FLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPG  313 (428)
T ss_pred             HHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhh
Confidence            33344444555555666555 4543 6778888899999999999999999999999999999999999998888776  


Q ss_pred             HHHHHHHHHHHHHhhhccccccccccccccccc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy6455         115 YYGVFLALRFINGFAVTGTLGICFPYLGEFQPT-------AYREKVLCWLEMFWTGGIIVLPAVAWLLIPLN  179 (249)
Q Consensus       115 ~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  179 (249)
                      +.+.+++..++.|++.+...+...++++|..+.       ++.|...+.++....++..+++.+.+.+.+..
T Consensus       314 ~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~  385 (428)
T PF13347_consen  314 SPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV  385 (428)
T ss_pred             hHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999999999999874       33588888999999999999999888876543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.30  E-value=5.7e-11  Score=99.67  Aligned_cols=121  Identities=10%  Similarity=-0.030  Sum_probs=80.5

Q ss_pred             ccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy6455          51 LPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFA  129 (249)
Q Consensus        51 ~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~  129 (249)
                      .|. +.+++|.+..+.+.+.+...++..++.++.+++.||+|||+.++++.++..++.....+.++.+.......+.+.+
T Consensus       226 ~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  305 (392)
T PRK10473        226 SPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAG  305 (392)
T ss_pred             CHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444 3456899988999999999999999999999999999999999999988888877777665554444444444444


Q ss_pred             hcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455         130 VTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI  176 (249)
Q Consensus       130 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~  176 (249)
                      .+...+.  ....+..|.++|+   +.......++..+++.+++++.
T Consensus       306 ~~~~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~  347 (392)
T PRK10473        306 FSVGFGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLA  347 (392)
T ss_pred             HHHHhHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHH
Confidence            3333332  2334455554443   3333334455555555555554

>KOG4686|consensus

Probab=99.30  E-value=2.6e-11  Score=94.22  Aligned_cols=174  Identities=13%  Similarity=0.109  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHH
Q psy6455          28 ILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCG  107 (249)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~  107 (249)
                      +.+..++.++.+..+.+....+.  .+++.+|+|+..++-+.+....-.++.+++.|.++||+|++...+.+..+..+..
T Consensus       267 w~~~iicv~yyva~fPFi~lg~~--fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~  344 (459)
T KOG4686|consen  267 WVLVIICVLYYVAWFPFITLGPM--FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLG  344 (459)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHH--HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHH
Confidence            34445555555544444444332  3677899999999999999999999999999999999999998888776665543


Q ss_pred             -HHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc
Q psy6455         108 -IASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPY  186 (249)
Q Consensus       108 -~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~  186 (249)
                       ....++  .+.=..+..+.|++........++.++...|+++.|++.+..+...++|-.+.|++++.+.+-.       
T Consensus       345 H~~l~Ft--~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~-------  415 (459)
T KOG4686|consen  345 HSGLFFT--FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD-------  415 (459)
T ss_pred             hhhHHhh--hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC-------
Confidence             222222  2222345567788766666667888999999999999999999999999999999999997544       


Q ss_pred             cccchh-HHHHHHHHHHHHHHHHHhhcc
Q psy6455         187 FLYSSW-NLFVTLVSVPSILLALWLTRF  213 (249)
Q Consensus       187 ~~~~~w-~~~~~~~~~~~~~~~~~~~~~  213 (249)
                       ....| ...|.+...+++....+++.+
T Consensus       416 -g~y~~le~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  416 -GSYDNLEAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             -CchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence             11234 334444455555554444444

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.29  E-value=2.4e-11  Score=100.01  Aligned_cols=127  Identities=25%  Similarity=0.300  Sum_probs=105.7

Q ss_pred             HHHHHHhhcccc-ccccCCC-CcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh---hHHH
Q psy6455          43 SITVLSFVLPSA-QCDFGMT-SSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA---QYYG  117 (249)
Q Consensus        43 ~~~~~~~~~~~~-~~~~~~s-~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---~~~~  117 (249)
                      .........|.+ .+++|.+ ..+.+++.+...++..++.++.|+++||+|+|+..........+..+...+.   ++..
T Consensus       221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (352)
T PF07690_consen  221 VFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPV  300 (352)
T ss_dssp             HHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHH
T ss_pred             HHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            344456666664 7779998 7888999999999999999999999999999887777766666665555443   3456


Q ss_pred             HHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q psy6455         118 VFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLP  169 (249)
Q Consensus       118 ~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  169 (249)
                      ..++..++.|++.+...+...+++.|..|+++|+++.++.+....+|..++|
T Consensus       301 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  301 WLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            6777888899999999999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK09669 putative symporter YagG; Provisional

Probab=99.28  E-value=5.6e-10  Score=95.30  Aligned_cols=131  Identities=10%  Similarity=-0.032  Sum_probs=96.1

Q ss_pred             hhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHH
Q psy6455          49 FVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV--AQYYGVFLALRFIN  126 (249)
Q Consensus        49 ~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~--~~~~~~l~~~~~l~  126 (249)
                      ...+++.++.--+.+..+.+.....+...++.+++++++||+|+|+.+.++.++.++......+  .++.+.+++..++.
T Consensus       250 ~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  329 (444)
T PRK09669        250 GATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILF  329 (444)
T ss_pred             hhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence            3334444442223334455666667788889999999999999999999887766654433222  34677777888899


Q ss_pred             Hhhhccccccccccccccccc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy6455         127 GFAVTGTLGICFPYLGEFQPT-------AYREKVLCWLEMFWTGGIIVLPAVAWLLIPLN  179 (249)
Q Consensus       127 G~~~g~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  179 (249)
                      |++.+...+...++++|..+.       +..|...+..+....+|..+++.+++.+.+..
T Consensus       330 g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~  389 (444)
T PRK09669        330 NFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV  389 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999998862       23466778888889999999999999887544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.28  E-value=1.3e-11  Score=104.90  Aligned_cols=161  Identities=14%  Similarity=0.082  Sum_probs=124.0

Q ss_pred             hccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhh----hcchhHHHH-HHHHHHHHHHHHHHhh-h-------HH
Q psy6455          50 VLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD----TQGRKITLI-GALLVDGLCGIASSVA-Q-------YY  116 (249)
Q Consensus        50 ~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~d----r~Grr~~~~-~~~~~~~i~~~~~~~~-~-------~~  116 (249)
                      ..+.+.+..|+++...+.+....-+..++..|+.|.++|    |+||||.++ ++.+..+++.+++... +       ..
T Consensus        24 ~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~  103 (428)
T PF13347_consen   24 LLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKL  103 (428)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHH
Confidence            344455668999999999999999999999999999999    899888655 5778888877776655 3       23


Q ss_pred             HHHHHHHHHHHhhhccccccccccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccc-chhHH
Q psy6455         117 GVFLALRFINGFAVTGTLGICFPYLGEFQPT-AYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLY-SSWNL  194 (249)
Q Consensus       117 ~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~-~~w~~  194 (249)
                      ..+.+..++..++.........++..|+.++ ++|.+..+..+.+..+|..+...+.+.+.+..+..     +. .+|++
T Consensus       104 ~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~-----~~~~~~~~  178 (428)
T PF13347_consen  104 VWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGG-----DTSNGYRW  178 (428)
T ss_pred             HHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccC-----ccchHHHH
Confidence            3456677777888888899999999999974 68999999988888888877777766665433110     12 27999


Q ss_pred             HHHHHHHHHHHHHHHh-hcccC
Q psy6455         195 FVTLVSVPSILLALWL-TRFPE  215 (249)
Q Consensus       195 ~~~~~~~~~~~~~~~~-~~~~~  215 (249)
                      ...+.+++.++..+.. +..+|
T Consensus       179 ~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  179 MALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHHHHHHhhhhhheeee
Confidence            9998888888777664 44577

>PRK10133 L-fucose transporter; Provisional

Probab=99.28  E-value=9.5e-11  Score=99.80  Aligned_cols=140  Identities=11%  Similarity=-0.080  Sum_probs=107.4

Q ss_pred             ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccc
Q psy6455          55 QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTL  134 (249)
Q Consensus        55 ~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~  134 (249)
                      ++.+|.++.+.++....+.++..++.++.|++.||+|+|+++..+.++.+++..+..+.++.. .++...+.|++.+..+
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~  365 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQY  365 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHH
Confidence            346899999999999999999999999999999999999999988887777666655555432 3456678899999999


Q ss_pred             cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccch-hHHHHHHHHHHHHHHHH
Q psy6455         135 GICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSS-WNLFVTLVSVPSILLAL  208 (249)
Q Consensus       135 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~  208 (249)
                      |...+...|..++ +.+.+.++..+ ..+|..++|.+.+.+.+           ..| -+..|++..+..+...+
T Consensus       366 P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~-----------~~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        366 PTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSD-----------AAGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             HHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHH-----------hccchHHHHHHHHHHHHHHHH
Confidence            9999999998875 45677777654 34678888888888863           234 56677655444444433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.27  E-value=3.4e-10  Score=95.91  Aligned_cols=157  Identities=10%  Similarity=-0.043  Sum_probs=106.9

Q ss_pred             HHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH-hh-----hHHHH
Q psy6455          45 TVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS-VA-----QYYGV  118 (249)
Q Consensus        45 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~-~~-----~~~~~  118 (249)
                      ...+..+|.+.++ ..+............+...+..+++|+++||+|+|++++++.+...++..... ..     .+++.
T Consensus       269 vg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~  347 (462)
T PRK15034        269 IGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIA  347 (462)
T ss_pred             HHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence            3344455554443 22222333334455677888999999999999999999998887777654322 12     24666


Q ss_pred             HHHHHHHHHhhhccccccccccccccccc---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455         119 FLALRFINGFAVTGTLGICFPYLGEFQPT---------------------AYREKVLCWLEMFWTGGIIVLPAVAWLLIP  177 (249)
Q Consensus       119 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~---------------------~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~  177 (249)
                      +.+..+...++.|........++.+.+|+                     ++-|.+.|+......+|+.+.|.+.+...+
T Consensus       348 ~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~  427 (462)
T PRK15034        348 FYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLN  427 (462)
T ss_pred             HHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHH
Confidence            66666666666777777788888888874                     156778888888899999999977666654


Q ss_pred             ccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455         178 LNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTR  212 (249)
Q Consensus       178 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  212 (249)
                      ..          .++...|+...+..+++.++.++
T Consensus       428 ~~----------g~~~~~~~~~~~~~~~~~~~~w~  452 (462)
T PRK15034        428 MT----------GSPVGAMKVFLIFYIVCVLLTWL  452 (462)
T ss_pred             Hc----------CCcHHHHHHHHHHHHHHHHHHHH
Confidence            32          46777788877777777666443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.27  E-value=9.3e-11  Score=100.88  Aligned_cols=177  Identities=11%  Similarity=0.003  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhh----hcchhH-HHHHHHHHHHHHHHH
Q psy6455          36 LYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD----TQGRKI-TLIGALLVDGLCGIA  109 (249)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~d----r~Grr~-~~~~~~~~~~i~~~~  109 (249)
                      +.+...+.......+++.+ .+.+|+++..+|.+..+.-+.-++..|+.|+++|    |+|||| .++++.+..+++..+
T Consensus        14 g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~l   93 (473)
T PRK10429         14 GAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFL   93 (473)
T ss_pred             chhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHH
Confidence            3333344445555545444 4557999999999999999999999999999999    669955 555677776766555


Q ss_pred             HHhhh------HHHHHHHHHHHHHhhhccccccccccccccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy6455         110 SSVAQ------YYGVFLALRFINGFAVTGTLGICFPYLGEFQ-PTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRI  182 (249)
Q Consensus       110 ~~~~~------~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~  182 (249)
                      +...+      .+..+.+..++.+++......+..++..|+. ++++|.+..++...+..+|..+.+.+...+....+. 
T Consensus        94 lf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~-  172 (473)
T PRK10429         94 LFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGG-  172 (473)
T ss_pred             HHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence            54322      1334556666778888888888899999998 688999999886666677766665554433221100 


Q ss_pred             cCcccccchhHHHHHHHHHHHHHHHHHhhc-ccCC
Q psy6455         183 ETPYFLYSSWNLFVTLVSVPSILLALWLTR-FPES  216 (249)
Q Consensus       183 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~  216 (249)
                         ..+..+|+....+.+++.++..+..++ .+|.
T Consensus       173 ---~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        173 ---GDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             ---CchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence               002246787777777776665554333 5664

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.27  E-value=5.2e-13  Score=115.47  Aligned_cols=184  Identities=16%  Similarity=0.170  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh
Q psy6455          33 GGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV  112 (249)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~  112 (249)
                      .++..+.+..........+.++++.|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-+|.++.+++.+++++
T Consensus         8 ~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~l   87 (539)
T PF03137_consen    8 LCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFAL   87 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhc
Confidence            33444444666777778889999999999999999999999999999999999999988888989999999999887764


Q ss_pred             --------------------------h-------------------h-----HHHHHHHHHHHHHhhhcccccccccccc
Q psy6455         113 --------------------------A-------------------Q-----YYGVFLALRFINGFAVTGTLGICFPYLG  142 (249)
Q Consensus       113 --------------------------~-------------------~-----~~~~l~~~~~l~G~~~g~~~~~~~~~~~  142 (249)
                                                .                   .     .+..++++.++.|+|....++...+|+-
T Consensus        88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiD  167 (539)
T PF03137_consen   88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYID  167 (539)
T ss_dssp             ----------------------------------------------------------------SSS-------------
T ss_pred             cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeec
Confidence                                      1                   0     1356788999999999999999999999


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-----------CcccccchhHHHHHHHHHHHHHHHHHhh
Q psy6455         143 EFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE-----------TPYFLYSSWNLFVTLVSVPSILLALWLT  211 (249)
Q Consensus       143 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~-----------~~~~~~~~w~~~~~~~~~~~~~~~~~~~  211 (249)
                      |..++++-+...|+......+|.++|-++++.+.+......           .+...-+.|+.-|++.+++.++..+.++
T Consensus       168 Dnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~  247 (539)
T PF03137_consen  168 DNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLF  247 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988875431111           1112224688889999999888888888


Q ss_pred             cccCC
Q psy6455         212 RFPES  216 (249)
Q Consensus       212 ~~~~~  216 (249)
                      .+|+.
T Consensus       248 ~FPk~  252 (539)
T PF03137_consen  248 FFPKK  252 (539)
T ss_dssp             -----
T ss_pred             cCCcc
Confidence            87765

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG0253|consensus

Probab=99.27  E-value=1.3e-10  Score=93.53  Aligned_cols=131  Identities=21%  Similarity=0.226  Sum_probs=102.4

Q ss_pred             hHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhH
Q psy6455          72 PMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYRE  151 (249)
Q Consensus        72 ~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~  151 (249)
                      ..+.-..|.++.+++.||+|||+.+..+++++.++.++...+.+-....+..+..-++..+.+.+.+.|..|.+|+..|+
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa  469 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA  469 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence            34556789999999999999999999999999999888777655444444444444555666778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccC
Q psy6455         152 KVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPE  215 (249)
Q Consensus       152 ~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  215 (249)
                      .+.|.......+|+++.|+++ ...            ..+-..+..+.+...+++.++..++|-
T Consensus       470 tgvGtcSsmaRIggI~~p~iA-~~~------------e~s~sl~i~vy~~~~ilagIavcffPi  520 (528)
T KOG0253|consen  470 TGVGTCSSMARIGGIFSPVIA-MRA------------ELSTSLPIFVYGALFILAGIAVCFFPI  520 (528)
T ss_pred             cchhhhhhHHhhhhhhhhHHH-HHh------------ccceeehHHHHHHHHHHHHHHheeeee
Confidence            999999999999999999998 332            123344566677777778777777764

>PRK11043 putative transporter; Provisional

Probab=99.23  E-value=4.1e-10  Score=94.78  Aligned_cols=128  Identities=15%  Similarity=0.030  Sum_probs=97.5

Q ss_pred             HhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH---h--hhHHHHHHHH
Q psy6455          48 SFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS---V--AQYYGVFLAL  122 (249)
Q Consensus        48 ~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~--~~~~~~l~~~  122 (249)
                      ....|.+.+++|.+..+.++......++..++..+.+++.||+|+|+.+....+..+++.+...   .  .++.+.+++.
T Consensus       223 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (401)
T PRK11043        223 LTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIP  302 (401)
T ss_pred             HHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            3445666677899998999988888889999999999999999999877665555444433221   1  2345555566


Q ss_pred             HHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455         123 RFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI  176 (249)
Q Consensus       123 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~  176 (249)
                      ..+.|++.+..++.......|..| ++|+++.++.+.....+...++.+.+.+.
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~  355 (401)
T PRK11043        303 FCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALI  355 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            677888888888888777777776 57999999999888888888888888775

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.23  E-value=1.9e-10  Score=96.47  Aligned_cols=167  Identities=20%  Similarity=0.217  Sum_probs=114.3

Q ss_pred             HHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcc-hhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy6455          41 AISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQG-RKITLIGALLVDGLCGIASSVAQYYGVF  119 (249)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~G-rr~~~~~~~~~~~i~~~~~~~~~~~~~l  119 (249)
                      .+......++++.+.++.|.|..++|.+.+...+...+.++++|.++||.+ +|+++.+..++.++........++++.+
T Consensus        15 f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~   94 (400)
T PF03825_consen   15 FFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWL   94 (400)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            344555667788888999999999999999999999999999999999986 5777778777777777777777888888


Q ss_pred             HHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHH-HHHHhcccccccCcccccchhHHHHHH
Q psy6455         120 LALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAV-AWLLIPLNLRIETPYFLYSSWNLFVTL  198 (249)
Q Consensus       120 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l-~~~l~~~~~~~~~~~~~~~~w~~~~~~  198 (249)
                      ++..++..+......|...++..+...+  ++.-.+-.-...++|-+++... +..+....        +..+....+++
T Consensus        95 ~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~--------~~~~~~~~~~i  164 (400)
T PF03825_consen   95 FVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYL--------GISGTSLIFYI  164 (400)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhh--------ccccccHHHHH
Confidence            8888888887777777777777777653  2333444444444555544332 22222111        11233345566


Q ss_pred             HHHHHHHHHHHhhcccCCh
Q psy6455         199 VSVPSILLALWLTRFPESP  217 (249)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~  217 (249)
                      .+...++.....+.+|+.|
T Consensus       165 ~~~~~~ll~~~~l~lp~~~  183 (400)
T PF03825_consen  165 AAILSLLLAGFALFLPKTP  183 (400)
T ss_pred             HHHHHHHHHHHHHhCCCCc
Confidence            6665555555555677766

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.16  E-value=5.2e-09  Score=87.98  Aligned_cols=180  Identities=11%  Similarity=0.063  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhh
Q psy6455          36 LYAYAAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ  114 (249)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~  114 (249)
                      ..++......+.+....++.+. +|.+.....+.......+..++.+++.++.+|+|+|+++.++.++.+++..+..+.+
T Consensus       244 ~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~  323 (467)
T COG2211         244 MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP  323 (467)
T ss_pred             HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc
Confidence            3344444555566666666554 676666777788888888888899999999999999999999999999998887765


Q ss_pred             --HHHHHHHHHHHHHhhhccccccccccccccccc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCc
Q psy6455         115 --YYGVFLALRFINGFAVTGTLGICFPYLGEFQPT-------AYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETP  185 (249)
Q Consensus       115 --~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~  185 (249)
                        +.+.+++..++.+++.+...+...++++|..+-       +.-|...+..+...=+|..++..+.+++....+--++.
T Consensus       324 ~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv~~~  403 (467)
T COG2211         324 AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYVPNV  403 (467)
T ss_pred             CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence              688888899999999999999999999988754       22366667777777888888888877776543211111


Q ss_pred             ----ccccchhHHHHHHH-HHHHHHHHHHhhcccC
Q psy6455         186 ----YFLYSSWNLFVTLV-SVPSILLALWLTRFPE  215 (249)
Q Consensus       186 ----~~~~~~w~~~~~~~-~~~~~~~~~~~~~~~~  215 (249)
                          ...-.+-+..+.+. ++..++.++...+.|-
T Consensus       404 ~~Q~~~al~gI~~~~~~~Pa~l~l~~~i~~~~y~L  438 (467)
T COG2211         404 SAQSASALFGIRFLFIILPALLLLLAAIIIFFYKL  438 (467)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence                11123444444444 4444444554444443

>PRK11462 putative transporter; Provisional

Probab=99.15  E-value=1.1e-09  Score=93.84  Aligned_cols=172  Identities=13%  Similarity=-0.018  Sum_probs=121.7

Q ss_pred             HHHHHHHHhhccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhh----cchhHHHH-HHHHHHHHHHHHHHhhh
Q psy6455          41 AISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT----QGRKITLI-GALLVDGLCGIASSVAQ  114 (249)
Q Consensus        41 ~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr----~Grr~~~~-~~~~~~~i~~~~~~~~~  114 (249)
                      .......+.++.. +.+..|+++..+|.+..+.-+.-++.-|+.|.++||    +||||..+ ++.+..+++..++...+
T Consensus        22 ~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p  101 (460)
T PRK11462         22 HIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP  101 (460)
T ss_pred             hHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC
Confidence            3334444444444 445589999999999999999999999999999995    79987665 56667777666554433


Q ss_pred             H------HHHHHHHHHHHHhhhcccccccccccccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccc
Q psy6455         115 Y------YGVFLALRFINGFAVTGTLGICFPYLGEFQP-TAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYF  187 (249)
Q Consensus       115 ~------~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~  187 (249)
                      +      ...+.+...+..++......+..++.+|+.+ +++|++..++...+..+|..+++.+...+....+..    .
T Consensus       102 ~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~----~  177 (460)
T PRK11462        102 DLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGD----N  177 (460)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----c
Confidence            2      3445566667788888888888899999987 688999999999998888888877765554322110    1


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhc-ccCC
Q psy6455         188 LYSSWNLFVTLVSVPSILLALWLTR-FPES  216 (249)
Q Consensus       188 ~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~  216 (249)
                      +..+|+....+.+++.+++.++.+. .+|.
T Consensus       178 ~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~  207 (460)
T PRK11462        178 KPLGFQGGIAVLSVVAFMMLAFCFFTTKER  207 (460)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence            2247888777777777666555433 4554

>TIGR00788 fbt folate/biopterin transporter

Probab=99.13  E-value=3.9e-10  Score=96.78  Aligned_cols=156  Identities=15%  Similarity=0.011  Sum_probs=121.2

Q ss_pred             cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHH
Q psy6455          56 CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV----------AQYYGVFLALRFI  125 (249)
Q Consensus        56 ~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~----------~~~~~~l~~~~~l  125 (249)
                      +.+|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++......          .++.+.+....++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            468999999999999999999999999999999999999999999999887755321          1333445566778


Q ss_pred             HHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHH-HHHHHHHHHH
Q psy6455         126 NGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNL-FVTLVSVPSI  204 (249)
Q Consensus       126 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~  204 (249)
                      .+++.+....+...++.+..|++.+++..++.+...++|..+++.+++.+.+..+...    ++.+..+ ...+..+..+
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~----~~~~~~~~~i~i~~~~~l  436 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITC----DNSNNLWLLILGHSLAPL  436 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----ccccchHHHHHHHHHHHH
Confidence            8888888888899999999999999999999999999999999999999976543211    1222222 3334445555


Q ss_pred             HHHHHhhcccC
Q psy6455         205 LLALWLTRFPE  215 (249)
Q Consensus       205 ~~~~~~~~~~~  215 (249)
                      +.+...+++|+
T Consensus       437 ~~l~~~~llP~  447 (468)
T TIGR00788       437 LPLPLLHLLPR  447 (468)
T ss_pred             HHHHHHHhCCC
Confidence            55555667785

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3626|consensus

Probab=99.12  E-value=7.4e-10  Score=97.06  Aligned_cols=189  Identities=15%  Similarity=0.145  Sum_probs=159.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH
Q psy6455          29 LVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGI  108 (249)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  108 (249)
                      .+.+..+..+.+++....+...+.++.+.|+++.++.|++.+.+-++..+...+..+...|..|-+.+-+|.++.+++.+
T Consensus        98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl  177 (735)
T KOG3626|consen   98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL  177 (735)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence            34555666677777778888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhh--------------------h-------------------------------HHH-HHHHHHHHHHhhhcccccc
Q psy6455         109 ASSVA--------------------Q-------------------------------YYG-VFLALRFINGFAVTGTLGI  136 (249)
Q Consensus       109 ~~~~~--------------------~-------------------------------~~~-~l~~~~~l~G~~~g~~~~~  136 (249)
                      ++++-                    +                               .++ .++++.++.|+|....++.
T Consensus       178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl  257 (735)
T KOG3626|consen  178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL  257 (735)
T ss_pred             HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence            87751                    0                               022 5677889999999999999


Q ss_pred             cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--------cCcccccchhHHHHHHHHHHHHHHHH
Q psy6455         137 CFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRI--------ETPYFLYSSWNLFVTLVSVPSILLAL  208 (249)
Q Consensus       137 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~--------~~~~~~~~~w~~~~~~~~~~~~~~~~  208 (249)
                      ..+|+-|...+++-...+|+......+|.++|-++++++.+..-..        +.+...-+.|+.-|++.+.+.++..+
T Consensus       258 GisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~  337 (735)
T KOG3626|consen  258 GISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAV  337 (735)
T ss_pred             CCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987654222        12333445788899999999999999


Q ss_pred             HhhcccCCh
Q psy6455         209 WLTRFPESP  217 (249)
Q Consensus       209 ~~~~~~~~~  217 (249)
                      .++++|+..
T Consensus       338 p~f~fPk~l  346 (735)
T KOG3626|consen  338 PLFFFPKEL  346 (735)
T ss_pred             HHHhCcccC
Confidence            988887653

>KOG2563|consensus

Probab=99.09  E-value=2.8e-09  Score=87.98  Aligned_cols=157  Identities=15%  Similarity=0.096  Sum_probs=129.0

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q psy6455          22 YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALL  101 (249)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~  101 (249)
                      ..++||..+++..+..+.+++.+..+.+...+....|| +.+.+-|...+|.+.+....+.+-|+.|++|-|...+++..
T Consensus        39 Vy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~  117 (480)
T KOG2563|consen   39 VYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTV  117 (480)
T ss_pred             cchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHH
Confidence            44667777778888888887777777777666666678 77788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh------hHHH--HHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455         102 VDGLCGIASSVA------QYYG--VFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAW  173 (249)
Q Consensus       102 ~~~i~~~~~~~~------~~~~--~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~  173 (249)
                      +..++..+-..+      +.++  ....+..+.+..+-.....-.....-|+++++|..+..+-.++..+|.+++.++..
T Consensus       118 ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llpp  197 (480)
T KOG2563|consen  118 LNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPP  197 (480)
T ss_pred             HHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccc
Confidence            999998875543      2344  66778888888776666665677788999999999999999999999999999988


Q ss_pred             HHhccc
Q psy6455         174 LLIPLN  179 (249)
Q Consensus       174 ~l~~~~  179 (249)
                      .+....
T Consensus       198 ilV~~~  203 (480)
T KOG2563|consen  198 ILVPSS  203 (480)
T ss_pred             eecCCC
Confidence            887543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.09  E-value=5.4e-09  Score=89.96  Aligned_cols=137  Identities=9%  Similarity=0.055  Sum_probs=108.5

Q ss_pred             hhhHHHHhHHHHHHHHHHHHh----hhhh-cchhHHH--HHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHh
Q psy6455          65 KGWLNAAPMLGMVFGSYFWGC----LADT-QGRKITL--IGALLVDGLCGIASSV---------AQYYGVFLALRFINGF  128 (249)
Q Consensus        65 ~~~~~~~~~i~~~i~~~~~g~----l~dr-~Grr~~~--~~~~~~~~i~~~~~~~---------~~~~~~l~~~~~l~G~  128 (249)
                      .+++.+...+...+.+++..+    +.|| .+.+...  .+|.++.+++.....+         ..|++++++..++.|+
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            678888888888888888664    4444 2333333  6788888887776654         3588999999999999


Q ss_pred             hhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHH
Q psy6455         129 AVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLAL  208 (249)
Q Consensus       129 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  208 (249)
                      |.....|...+++.+..|++.|++.++++.....+|..+++.+.....           +..+|...|...++..++..+
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~  462 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGA-----------VPQGVTGVFGKIGLVTLLVGV  462 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------cccchhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998887765           234677788777777766666


Q ss_pred             Hhhc
Q psy6455         209 WLTR  212 (249)
Q Consensus       209 ~~~~  212 (249)
                      ..++
T Consensus       463 ~~~~  466 (475)
T TIGR00924       463 VMAL  466 (475)
T ss_pred             HHHH
Confidence            5433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.08  E-value=6.5e-09  Score=83.71  Aligned_cols=163  Identities=15%  Similarity=0.098  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc-chhHHHHHHHHHHHHHHHHHHhhhHHH
Q psy6455          39 YAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ-GRKITLIGALLVDGLCGIASSVAQYYG  117 (249)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~~~  117 (249)
                      .+.+..++....+|.+..|.|+|+.+.|++.+...+.....++....+.+|. ++|+..+...+...++...+.+.+.-.
T Consensus       219 lqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~  298 (395)
T COG2807         219 LQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQL  298 (395)
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhH
Confidence            3455667778889999999999999999999999999999999999999965 566677777777777777777766433


Q ss_pred             HHHHHHHHHHhhhcccccccccccccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHH
Q psy6455         118 VFLALRFINGFAVTGTLGICFPYLGEFQPTAY-REKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFV  196 (249)
Q Consensus       118 ~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~  196 (249)
                      .+.. -++.|+|.|..++.....+.+-.+..+ -++-.++.|....+=...||.+.|++-|..          .+|+...
T Consensus       299 ~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~----------gsw~~~~  367 (395)
T COG2807         299 PILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT----------GSWSAPL  367 (395)
T ss_pred             HHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc----------CChHHHH
Confidence            2222 489999999999999998887765544 455555677777778888999999997654          7899988


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy6455         197 TLVSVPSILLALWLTR  212 (249)
Q Consensus       197 ~~~~~~~~~~~~~~~~  212 (249)
                      +..+...++..+.-+.
T Consensus       368 ~~l~~~~i~m~i~Gl~  383 (395)
T COG2807         368 VLLALATLLMLIFGLR  383 (395)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            8888777777666443

>PRK11462 putative transporter; Provisional

Probab=99.07  E-value=3.3e-08  Score=84.81  Aligned_cols=117  Identities=9%  Similarity=-0.031  Sum_probs=80.5

Q ss_pred             CcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHhhhccccccccc
Q psy6455          62 SSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ--YYGVFLALRFINGFAVTGTLGICFP  139 (249)
Q Consensus        62 ~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~~~l~G~~~g~~~~~~~~  139 (249)
                      ....+.+.+.+.++..++.+++++++||+|+|+.+..+..+..+..++..+.+  +...+.+.-++.|++.+...+...+
T Consensus       262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~  341 (460)
T PRK11462        262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV  341 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677788888999999999999999999987765554444333332322  2333444556678777666666677


Q ss_pred             ccccccc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy6455         140 YLGEFQP-------TAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL  178 (249)
Q Consensus       140 ~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~  178 (249)
                      +++|..+       .+.-|...+......-+|..+++.+++.+...
T Consensus       342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~  387 (460)
T PRK11462        342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY  387 (460)
T ss_pred             HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777766       33335556677778889999999988887654

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=99.07  E-value=4.9e-09  Score=83.81  Aligned_cols=156  Identities=28%  Similarity=0.360  Sum_probs=121.3

Q ss_pred             HHHHHHHhhccccccccCCCC--cchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhH--HH
Q psy6455          42 ISITVLSFVLPSAQCDFGMTS--SDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQY--YG  117 (249)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~s~--~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~--~~  117 (249)
                      ..........+.+..+++.+.  ...+++.+.+.++..++.++.|+++||+|||+.++.+.....++.+...+..+  .+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
T COG0477          16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA   95 (338)
T ss_pred             HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence            444445555666666666555  47899999999999999999999999999998888888765555556665555  88


Q ss_pred             HHHHHHHHHHhhhccccccccccccccccc-chhHHHHHHHHH-HHHHHHHHHHHHHHHHhcccccccCcccccchhHHH
Q psy6455         118 VFLALRFINGFAVTGTLGICFPYLGEFQPT-AYREKVLCWLEM-FWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLF  195 (249)
Q Consensus       118 ~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~  195 (249)
                      .+++.|++.|++.+...+...+++.|..|+ ++|+...+.... ...+|..+++.+++.+...         ...+|+..
T Consensus        96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~  166 (338)
T COG0477          96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA---------LLWGWRAA  166 (338)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhcchHHH
Confidence            899999999999998899999999999987 678888888777 5788889998887777532         12478886


Q ss_pred             HHHHHHHHHHH
Q psy6455         196 VTLVSVPSILL  206 (249)
Q Consensus       196 ~~~~~~~~~~~  206 (249)
                      +..........
T Consensus       167 ~~~~~~~~~~~  177 (338)
T COG0477         167 FLLAALLGLLL  177 (338)
T ss_pred             HHHHHHHHHHH
Confidence            66666555433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.06  E-value=2e-08  Score=84.37  Aligned_cols=126  Identities=14%  Similarity=0.010  Sum_probs=93.8

Q ss_pred             hccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHH-HHHHHHHHHHHh--hhHHHHHHHHHHH
Q psy6455          50 VLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGAL-LVDGLCGIASSV--AQYYGVFLALRFI  125 (249)
Q Consensus        50 ~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~-~~~~i~~~~~~~--~~~~~~l~~~~~l  125 (249)
                      ..+.+.++ +|.+..+.+++.....++..+++.+.+++.||++++....... ....+.......  ..+.+.+.+..++
T Consensus       229 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (394)
T PRK11652        229 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAAL  308 (394)
T ss_pred             hChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            34444444 8989889999998889999999999999999998443332222 222222222221  2345667777888


Q ss_pred             HHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455         126 NGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI  176 (249)
Q Consensus       126 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~  176 (249)
                      .|++.+...+....+..|..| ++++...++.+....+|..+++.+++.+.
T Consensus       309 ~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~  358 (394)
T PRK11652        309 FFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLP  358 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            999999889999999999887 57899999999999999999999988874

>KOG2532|consensus

Probab=99.04  E-value=1.9e-09  Score=91.75  Aligned_cols=175  Identities=14%  Similarity=0.104  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcch---------hHHHHH
Q psy6455          29 LVIFGGLLYAYAAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGR---------KITLIG   98 (249)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Gr---------r~~~~~   98 (249)
                      .++.+.+..+........+..++|.+.++ +|.+..+.|++.++..+.+.+..+++|.++||.-+         |..=.+
T Consensus       259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i  338 (466)
T KOG2532|consen  259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTI  338 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhH
Confidence            45667777788888888888899998776 99999999999999999999999999999998754         233334


Q ss_pred             HHHHHHHHHHHHHhhhH--H-HHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455          99 ALLVDGLCGIASSVAQY--Y-GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLL  175 (249)
Q Consensus        99 ~~~~~~i~~~~~~~~~~--~-~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l  175 (249)
                      +....+++.+.+++.++  . ..++..-+..++ .|...+..+.-..+. .+++-+..+++.+....+.+.++|.+.+.+
T Consensus       339 ~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~-~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~  416 (466)
T KOG2532|consen  339 AFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGL-SGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGII  416 (466)
T ss_pred             HHHHHHHHHHeeeecCCCcchHHHHHHHHHHHH-cccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeE
Confidence            55555666666666552  2 122222222222 122233233233332 457889999999999999999999999999


Q ss_pred             hcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcc
Q psy6455         176 IPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRF  213 (249)
Q Consensus       176 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  213 (249)
                      ....        +...|+.+|++.+++.++..+.+.++
T Consensus       417 ~~~~--------t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  417 VTDN--------TREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             eCCC--------CHHHHHHHHHHHHHHHHHhchheeEe
Confidence            7422        34689999999999999988765554

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.01  E-value=3.5e-08  Score=85.53  Aligned_cols=145  Identities=9%  Similarity=0.063  Sum_probs=103.9

Q ss_pred             hhhHHHHhHHHHHHHHHHH----HhhhhhcchhHHHHHHHHHHHHHHHHHHhhhH---------HHHHHHHHHHHHhhhc
Q psy6455          65 KGWLNAAPMLGMVFGSYFW----GCLADTQGRKITLIGALLVDGLCGIASSVAQY---------YGVFLALRFINGFAVT  131 (249)
Q Consensus        65 ~~~~~~~~~i~~~i~~~~~----g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~---------~~~l~~~~~l~G~~~g  131 (249)
                      .+++.+...+...+.+++.    +++.+|++.++.+.+|.++.+++.+...+..+         .+++++..++.|++.+
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            5666677776666666665    67777777778899999999999888776654         4678899999999999


Q ss_pred             ccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHh
Q psy6455         132 GTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWL  210 (249)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  210 (249)
                      ...|....++.+..|++.|++.+|++.....+|..++..+........... +......+..+.|...++..++..++.
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~a~~~  475 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVT-DPLMSLEVYGRVFLQIGIATAVIAVLM  475 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-cchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988877777777766664332000000 000011236677877777666554443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.01  E-value=7.7e-09  Score=87.40  Aligned_cols=126  Identities=10%  Similarity=-0.034  Sum_probs=94.0

Q ss_pred             hhcccccccc--CCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy6455          49 FVLPSAQCDF--GMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN  126 (249)
Q Consensus        49 ~~~~~~~~~~--~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~  126 (249)
                      ..++.+.++.  +.+....+...+.+..+..+|.++++++.||+++|+++.++.++.++..++..+.++... ....++.
T Consensus       253 s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~  331 (410)
T TIGR00885       253 TFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLC  331 (410)
T ss_pred             HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence            3444444443  334444455666667788999999999999999999999998888888887777666443 5666777


Q ss_pred             HhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455         127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP  177 (249)
Q Consensus       127 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~  177 (249)
                      |++.+..+|...+...+..+++.+.....+.. . .+|+.+.|.+.+++.+
T Consensus       332 glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~-~-~~Gga~~p~l~G~~~d  380 (410)
T TIGR00885       332 SAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM-A-IIGGGIVPPLQGFIID  380 (410)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH-H-HhccchHHHHHHHHHH
Confidence            88888889999999999998765433333333 3 3899999999999985

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.01  E-value=1.7e-08  Score=84.91  Aligned_cols=179  Identities=13%  Similarity=0.037  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHHHHhhcccccc-ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhh----hcchhHHHH-HHHHHHHHHHH
Q psy6455          35 LLYAYAAISITVLSFVLPSAQC-DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD----TQGRKITLI-GALLVDGLCGI  108 (249)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~d----r~Grr~~~~-~~~~~~~i~~~  108 (249)
                      +.-+...........++..+.. ..|+++..+|.+..+.=+--++.-|+.|.++|    |+||+|.++ ++.+..++...
T Consensus        19 ~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~   98 (467)
T COG2211          19 LGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV   98 (467)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHH
Confidence            3444444555555566666554 48999999999999999999999999999999    578876554 56677777777


Q ss_pred             HHHhhh------HHHHHHHHHHHHHhhhcccccccccccccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy6455         109 ASSVAQ------YYGVFLALRFINGFAVTGTLGICFPYLGEFQP-TAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLR  181 (249)
Q Consensus       109 ~~~~~~------~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~  181 (249)
                      ++..++      +.....+...+.+++......+..++.+|+.+ +++|.+..++.+.+..+|..+...+...+....++
T Consensus        99 l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~  178 (467)
T COG2211          99 LLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGG  178 (467)
T ss_pred             HHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            776665      34556677888899999998889999999974 47899999999999888988877777666554422


Q ss_pred             ccCcccccchhHHHHHHHHHHHHHHHHHhhc-ccCCh
Q psy6455         182 IETPYFLYSSWNLFVTLVSVPSILLALWLTR-FPESP  217 (249)
Q Consensus       182 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~  217 (249)
                      .+    ...||+....+.+++..+..++.++ .+|.+
T Consensus       179 ~~----~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~  211 (467)
T COG2211         179 GD----KALGYQGTALVLGVIGVILLLFCFFNVKERV  211 (467)
T ss_pred             Cc----chhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            21    2468998888888888777776554 56654

>PRK09848 glucuronide transporter; Provisional

Probab=99.00  E-value=1.2e-08  Score=87.35  Aligned_cols=123  Identities=10%  Similarity=-0.050  Sum_probs=83.4

Q ss_pred             ccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc----chhHHH-HHHHHHHHHHHHHHH-h----hh--HHHH
Q psy6455          51 LPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ----GRKITL-IGALLVDGLCGIASS-V----AQ--YYGV  118 (249)
Q Consensus        51 ~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~----Grr~~~-~~~~~~~~i~~~~~~-~----~~--~~~~  118 (249)
                      .+++.+..|++..++|.+.+...+..++..++.|+++||.    ||||.+ +++.+...+...+.. .    ..  ....
T Consensus        32 ~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (448)
T PRK09848         32 LSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVY  111 (448)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHH
Confidence            3445566899999999999999999999999999999996    777755 455554444433322 1    11  2233


Q ss_pred             HHHHHHHHHhhhccccccccccccccccc-chhHHHHHHHHHHHH-----HHHHHHHHHHH
Q psy6455         119 FLALRFINGFAVTGTLGICFPYLGEFQPT-AYREKVLCWLEMFWT-----GGIIVLPAVAW  173 (249)
Q Consensus       119 l~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~-----~g~~~~~~l~~  173 (249)
                      ..+..++.+++.+...+...++..|+..+ ++|.+..++...+..     ++..++|.+..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~  172 (448)
T PRK09848        112 AYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKN  172 (448)
T ss_pred             HHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555677888888887777777777654 678887776654433     44455555554

>KOG0252|consensus

Probab=99.00  E-value=1.7e-09  Score=89.39  Aligned_cols=186  Identities=16%  Similarity=0.052  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhh--------HHHH-hHHHHHHHHHHHHhhhhhcchhHHHHH
Q psy6455          28 ILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGW--------LNAA-PMLGMVFGSYFWGCLADTQGRKITLIG   98 (249)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--------~~~~-~~i~~~i~~~~~g~l~dr~Grr~~~~~   98 (249)
                      +.++.....++..-...+..+.....+.++.++.+.....        ...+ ...++..|-.+...+.|++|||++.+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            5556666777777777777777777777877776655433        1111 112223355566779999999999999


Q ss_pred             HHHHHHHHHHHHHhhhH----HHHHHHHHHHHHh-hhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455          99 ALLVDGLCGIASSVAQY----YGVFLALRFINGF-AVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAW  173 (249)
Q Consensus        99 ~~~~~~i~~~~~~~~~~----~~~l~~~~~l~G~-~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~  173 (249)
                      +.++..+..+..+...+    ...+++...+..+ +.-+..+....+.+|.+|.+.|++.-++.....-.|++++.....
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~  463 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL  463 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence            99999998888776544    1222222222222 222345666778899999999999999999999999999998888


Q ss_pred             HHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhH
Q psy6455         174 LLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKF  219 (249)
Q Consensus       174 ~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (249)
                      ++.+-.      .....+.++++++.+.++++..+..+++||+..+
T Consensus       464 ~~t~~~------yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~  503 (538)
T KOG0252|consen  464 YLTDHN------YPPNIGVRNVFIILAGCMLLGILFTLLIPETKGK  503 (538)
T ss_pred             Hhhhcc------CCccccchHHHHHHHHHHHHhHheeEEeeccccc
Confidence            876421      1134688999999999999999998889988653

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.98  E-value=3.2e-09  Score=88.31  Aligned_cols=162  Identities=15%  Similarity=0.138  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH--HHHHHH-Hhh
Q psy6455          38 AYAAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDG--LCGIAS-SVA  113 (249)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~--i~~~~~-~~~  113 (249)
                      +...+...+..++.+.+.++ .|+|.+++|.+.+...+...+.+++.|.++||.|.||-++....+..  .+.+.. .+.
T Consensus        17 f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~   96 (412)
T PF01306_consen   17 FFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFG   96 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344466666777776665 89999999999999999999999999999999997776554433322  222221 222


Q ss_pred             hHH-HHHHHHHHHHHhhhcccc----cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccc
Q psy6455         114 QYY-GVFLALRFINGFAVTGTL----GICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFL  188 (249)
Q Consensus       114 ~~~-~~l~~~~~l~G~~~g~~~----~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~  188 (249)
                      +-. .-+.++-++.|+..+..+    +..-+++.+..  ++.+.-.|-.-+..++|.+++..++|.+.+.          
T Consensus        97 pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i----------  164 (412)
T PF01306_consen   97 PLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI----------  164 (412)
T ss_dssp             HHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee----------
Confidence            211 112223333334333333    33333332222  2334445556677889999999999998632          


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhcc
Q psy6455         189 YSSWNLFVTLVSVPSILLALWLTRF  213 (249)
Q Consensus       189 ~~~w~~~~~~~~~~~~~~~~~~~~~  213 (249)
                        +-+..|++....+++..++.++.
T Consensus       165 --~p~~~fwi~s~~~~il~lll~~~  187 (412)
T PF01306_consen  165 --NPNIIFWIASAAAIILLLLLLLL  187 (412)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             --CccHHHHHHHHHHHHHHHHHHHc
Confidence              34566776666555555554444

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2816|consensus

Probab=98.98  E-value=2.3e-08  Score=85.05  Aligned_cols=132  Identities=23%  Similarity=0.373  Sum_probs=106.1

Q ss_pred             HhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhcccccccccccccccccc
Q psy6455          71 APMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGF--AVTGTLGICFPYLGEFQPTA  148 (249)
Q Consensus        71 ~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~--~~g~~~~~~~~~~~~~~~~~  148 (249)
                      ...+...+.++..|.++||+|||..+.+..+...+..+...+.. +|.++    +.++  +.+.......++++|....+
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~  144 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE  144 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence            34677889999999999999999999999998888877776666 33333    3333  23455788889999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH-hhcccCChh
Q psy6455         149 YREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW-LTRFPESPK  218 (249)
Q Consensus       149 ~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~  218 (249)
                      .|....++.+..+..+..++|.+++.+..           ..+.-.+|.+.++..++..+. .+++||+..
T Consensus       145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~-----------~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~  204 (463)
T KOG2816|consen  145 ERSSSIGLLSGTFGAGLVIGPALGGYLVK-----------FLGIALVFLIAAASGILSLLYMLLFLPESLQ  204 (463)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------hcCchHHHHHHHHHHHHHHHHHhhccccccC
Confidence            99999999999999999999999999973           357778888888888887776 455787743

>KOG0254|consensus

Probab=98.97  E-value=3.8e-08  Score=85.62  Aligned_cols=178  Identities=15%  Similarity=0.022  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHH
Q psy6455          28 ILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCG  107 (249)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~  107 (249)
                      +.+..+.+..+.+.........+.+.+.+..|.+... .+......+...++..+...+.||+|||+.++.+.....++.
T Consensus       295 ~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~  373 (513)
T KOG0254|consen  295 RLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICL  373 (513)
T ss_pred             HHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHH
Confidence            3444444444544444455566677777777766444 666667777788888888999999999999999999999998


Q ss_pred             HHHHhhhH-------------HHHHH-HHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455         108 IASSVAQY-------------YGVFL-ALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAW  173 (249)
Q Consensus       108 ~~~~~~~~-------------~~~l~-~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~  173 (249)
                      ++++....             ...+. ...++..+. .+..+....+.+|.+|.+.|+.+.++......+...+-.....
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~-~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~  452 (513)
T KOG0254|consen  374 VILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFA-IGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFP  452 (513)
T ss_pred             HHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHh-cccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            87764321             11122 222333333 3345566678899999999999999866554444433333333


Q ss_pred             HHhcccccccCcccccchhHHHHHHHHHHHHHHHH--HhhcccCChh
Q psy6455         174 LLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLAL--WLTRFPESPK  218 (249)
Q Consensus       174 ~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~--~~~~~~~~~~  218 (249)
                      .....           .++...|...+..+.+...  ..+++||+..
T Consensus       453 ~~~~~-----------~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg  488 (513)
T KOG0254|consen  453 FITEA-----------LGIGGTFGYFGGICLLSLIIFVFFFVPETKG  488 (513)
T ss_pred             HHHHh-----------ccccchHHHHHHHHHHHHHHHheEEcccCCC
Confidence            33211           1123444444444444444  4666798743

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.94  E-value=2.4e-09  Score=88.76  Aligned_cols=117  Identities=15%  Similarity=0.099  Sum_probs=86.5

Q ss_pred             HHhhccccc-cccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh--hh--HHHHHHH
Q psy6455          47 LSFVLPSAQ-CDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV--AQ--YYGVFLA  121 (249)
Q Consensus        47 ~~~~~~~~~-~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~--~~--~~~~l~~  121 (249)
                      .....|.+. +.+|.+..+.+++.+...++..++.+++|+++||+|+|+.+..+......+..+..+  .+  +.+...+
T Consensus       244 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (366)
T TIGR00886       244 VSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIV  323 (366)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence            334444444 558999999999999999999999999999999999998887777666665554443  22  5555555


Q ss_pred             HHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHH
Q psy6455         122 LRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGG  164 (249)
Q Consensus       122 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  164 (249)
                      ...+.+++.|...+...+.+++..| ++++...|+.+....+|
T Consensus       324 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       324 LFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            5555666666666777788888887 68999999987766554

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.93  E-value=1.6e-07  Score=77.22  Aligned_cols=161  Identities=15%  Similarity=0.007  Sum_probs=130.1

Q ss_pred             ccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHH
Q psy6455          51 LPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD-TQGRKITLIGALLVDGLCGIASSV---AQYYGVFLALRFIN  126 (249)
Q Consensus        51 ~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~d-r~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~l~~~~~l~  126 (249)
                      -|+=.+-+|++..+...++.....|..++....|++.. |.++++.-.+++.+.+++..+..+   ..+.+.+...-++.
T Consensus       232 EPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~  311 (403)
T PF03209_consen  232 EPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLL  311 (403)
T ss_pred             CCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            34445569999999999999999999999999998877 778888888888887777665444   35778899999999


Q ss_pred             HhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHH
Q psy6455         127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILL  206 (249)
Q Consensus       127 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  206 (249)
                      |++.|.......+.+.++..+++.|..+|.+...+.++..++..+++.+.|........ ....+|-.+|.+-++..+++
T Consensus       312 G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~-~~~~aY~~VF~lEa~ll~~a  390 (403)
T PF03209_consen  312 GLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGN-SPALAYGVVFALEAVLLLAA  390 (403)
T ss_pred             HHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHH
Confidence            99999988888899999999999999999999999999999999999987654222110 13457888888888887777


Q ss_pred             HHHhhc
Q psy6455         207 ALWLTR  212 (249)
Q Consensus       207 ~~~~~~  212 (249)
                      +++...
T Consensus       391 ~~ll~~  396 (403)
T PF03209_consen  391 LVLLGR  396 (403)
T ss_pred             HHHHHH
Confidence            776543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG3762|consensus

Probab=98.89  E-value=2e-09  Score=90.49  Aligned_cols=147  Identities=13%  Similarity=0.054  Sum_probs=126.5

Q ss_pred             cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccc
Q psy6455          54 AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGT  133 (249)
Q Consensus        54 ~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~  133 (249)
                      ..+|.+-.+...|........+-...=++.+++..|+|+-+++..++....+=.+..++..|.|+.+...+++|+..+..
T Consensus       397 Hled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~ali  476 (618)
T KOG3762|consen  397 HLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALI  476 (618)
T ss_pred             HHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHH
Confidence            35677767777787667777777888889999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccccchhHHHHHHHHH-HHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhh
Q psy6455         134 LGICFPYLGEFQPTAYREKVLCWLEM-FWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLT  211 (249)
Q Consensus       134 ~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  211 (249)
                      +....+|++...|++.|.++.++.+. ..++|-.+|.++++.+.           +..+-|..|.+.++.+++.++...
T Consensus       477 Waa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v-----------~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  477 WAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVV-----------ERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             HHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhh-----------eeehhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999765 46899999999999997           445777888887777766665533

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.86  E-value=1.7e-07  Score=79.35  Aligned_cols=132  Identities=12%  Similarity=0.017  Sum_probs=85.5

Q ss_pred             HHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH-----hhhHHH
Q psy6455          44 ITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS-----VAQYYG  117 (249)
Q Consensus        44 ~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~-----~~~~~~  117 (249)
                      ........|.+.++ +|.++.+.++.......+..++..+.+++.++..+++.......+..++..+..     ..++++
T Consensus       234 ~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~  313 (413)
T PRK15403        234 MMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWL  313 (413)
T ss_pred             HHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHH
Confidence            34455566765554 799999999998888888888888888876554444433222222222222221     123343


Q ss_pred             HHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455         118 VFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI  176 (249)
Q Consensus       118 ~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~  176 (249)
                      ..++..++.++|.+...+......-+ -....+|++.++.+.....+..+++.+.+++.
T Consensus       314 ~~~~~~~l~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~  371 (413)
T PRK15403        314 WSVLGTSLYAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLW  371 (413)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677788888888877776632211 12224788899988888888888888888885

>KOG3764|consensus

Probab=98.86  E-value=1.9e-09  Score=87.67  Aligned_cols=160  Identities=17%  Similarity=0.165  Sum_probs=125.5

Q ss_pred             HHHHHHhhccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcc--hhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy6455          43 SITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQG--RKITLIGALLVDGLCGIASSVAQYYGVF  119 (249)
Q Consensus        43 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~i~~~~~~~~~~~~~l  119 (249)
                      .....-+.++. +.+++..+.-+.|+......+.+.++..+.|.++||++  |-...+.+++...+++....+++++..+
T Consensus       285 ~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L  364 (464)
T KOG3764|consen  285 SLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQL  364 (464)
T ss_pred             hHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHH
Confidence            33444455555 34557755558999999999999999999999999999  5555556677777777788899999999


Q ss_pred             HHHHHHHHhhhcccccccccccccccccch------hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhH
Q psy6455         120 LALRFINGFAVTGTLGICFPYLGEFQPTAY------REKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWN  193 (249)
Q Consensus       120 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~  193 (249)
                      .+-++..|++.+...+.......+..+.++      .|...++.+..+.+|..+||.+++.+.           +..|++
T Consensus       365 ~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv-----------~~iGF~  433 (464)
T KOG3764|consen  365 WVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLV-----------EAIGFE  433 (464)
T ss_pred             hhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhe-----------eehhHH
Confidence            999988888888777777766666665543      467888899999999999999999998           557999


Q ss_pred             HHHHHHHHHHHHHHHHhhcc
Q psy6455         194 LFVTLVSVPSILLALWLTRF  213 (249)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~  213 (249)
                      |...+.++..++-..+...+
T Consensus       434 wl~~iig~~n~iyapvl~ll  453 (464)
T KOG3764|consen  434 WLMTIIGILNLIYAPVLLLL  453 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99888888887776665443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.86  E-value=7.9e-08  Score=79.03  Aligned_cols=125  Identities=18%  Similarity=0.167  Sum_probs=97.9

Q ss_pred             cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcc-----hhHHHHH-HHHHHHHHHHHHHhh-----h--------
Q psy6455          54 AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQG-----RKITLIG-ALLVDGLCGIASSVA-----Q--------  114 (249)
Q Consensus        54 ~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~G-----rr~~~~~-~~~~~~i~~~~~~~~-----~--------  114 (249)
                      +..|++++....+.+.....+.. ...+.+|+.||+.+     ||..+++ |.++...+..+..++     .        
T Consensus         6 MIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            34678888888888888887665 56999999999999     8887775 455555554444331     2        


Q ss_pred             H-H--HHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy6455         115 Y-Y--GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLN  179 (249)
Q Consensus       115 ~-~--~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  179 (249)
                      . .  ....+..++.|+|.+...+...++++|..|+|+|+++.++......+|.+++..+.+.+.+.+
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~  152 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF  152 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            1 1  234556688899999999999999999999999999999988888899999999988887543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.85  E-value=1.6e-07  Score=81.89  Aligned_cols=190  Identities=13%  Similarity=0.089  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccc-cCCCC---cchhhHHHHhHHHHHHHHHHHHhhhhhcch-hHHHHHHHHHH
Q psy6455          29 LVIFGGLLYAYAAISITVLSFVLPSAQCD-FGMTS---SDKGWLNAAPMLGMVFGSYFWGCLADTQGR-KITLIGALLVD  103 (249)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~---~~~~~~~~~~~i~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~  103 (249)
                      .+....+..++.++.++....+.|..... ++-+.   ...++....+.++..+++.+.|.+..+++| |+.++++.++.
T Consensus       311 ~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~  390 (599)
T PF06609_consen  311 GFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLM  390 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence            34444455555666666666666664333 44443   357888889999999999999999998887 44556777776


Q ss_pred             HHHHHHHHhh--hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-
Q psy6455         104 GLCGIASSVA--QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNL-  180 (249)
Q Consensus       104 ~i~~~~~~~~--~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-  180 (249)
                      .++.-.++..  +|....+...++.|++.|..........+-..|++.-+.+.++......+|+.+|..+..-+..... 
T Consensus       391 ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~  470 (599)
T PF06609_consen  391 TAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLP  470 (599)
T ss_pred             HHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhh
Confidence            6554444432  3445556778899999998888888888888999999999999999988888888776544432110 


Q ss_pred             -------------------------------ccc-----Ccc--------------cccchhHHHHHHHHHHHHHHHHHh
Q psy6455         181 -------------------------------RIE-----TPY--------------FLYSSWNLFVTLVSVPSILLALWL  210 (249)
Q Consensus       181 -------------------------------~~~-----~~~--------------~~~~~w~~~~~~~~~~~~~~~~~~  210 (249)
                                                     ..+     .+.              .-..++|++|+....+..++.++.
T Consensus       471 ~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa  550 (599)
T PF06609_consen  471 KELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAA  550 (599)
T ss_pred             HhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                           000     000              011368899999999999999998


Q ss_pred             hcccCChh
Q psy6455         211 TRFPESPK  218 (249)
Q Consensus       211 ~~~~~~~~  218 (249)
                      +++++..+
T Consensus       551 ~fl~d~~~  558 (599)
T PF06609_consen  551 LFLGDIDK  558 (599)
T ss_pred             HHcCChHH
Confidence            88877544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.85  E-value=1.7e-07  Score=83.19  Aligned_cols=155  Identities=12%  Similarity=-0.002  Sum_probs=120.5

Q ss_pred             cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHH
Q psy6455          54 AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT-QGRKITLIGALLVDGLCGIASSVAQ--------YYGVFLALRF  124 (249)
Q Consensus        54 ~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~--------~~~~l~~~~~  124 (249)
                      +.+.+|.+.+.+..+...+....-+..+++|+++|+ +||++.++++.++..++..+.++..        .....+++..
T Consensus        14 l~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLa   93 (654)
T TIGR00926        14 FLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLA   93 (654)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHH
Confidence            334588888888888888888888999999999996 6999999999999999888776542        1233566777


Q ss_pred             HHHhhhcccccccccccccccccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHH
Q psy6455         125 INGFAVTGTLGICFPYLGEFQPTA---YREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSV  201 (249)
Q Consensus       125 l~G~~~g~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~  201 (249)
                      +..+|.|+.-+...+...|.++++   +|-....++..+.++|+.+++.+.+++.+..+    .++++.+|...|.+.++
T Consensus        94 Lia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~----~fg~~~~~~~aF~i~~i  169 (654)
T TIGR00926        94 LIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVG----CFGCQDCYPLAFGVPAI  169 (654)
T ss_pred             HHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccccCcchHHHHHHHHH
Confidence            888899999999999999998754   36777888888999999999999888852210    01123579999999998


Q ss_pred             HHHHHHHHhhc
Q psy6455         202 PSILLALWLTR  212 (249)
Q Consensus       202 ~~~~~~~~~~~  212 (249)
                      .++++.++...
T Consensus       170 ~m~ia~lvf~~  180 (654)
T TIGR00926       170 LMILALIVFMA  180 (654)
T ss_pred             HHHHHHHHHHH
Confidence            88888776443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.84  E-value=1.2e-07  Score=81.94  Aligned_cols=147  Identities=9%  Similarity=0.004  Sum_probs=106.0

Q ss_pred             hhhHHHHhHHHHHHHHHHHHhhhhhcchhHH-------HHHHHHHHHHHHHHHH-----hh-----hHHHHHHHHHHHHH
Q psy6455          65 KGWLNAAPMLGMVFGSYFWGCLADTQGRKIT-------LIGALLVDGLCGIASS-----VA-----QYYGVFLALRFING  127 (249)
Q Consensus        65 ~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~-------~~~~~~~~~i~~~~~~-----~~-----~~~~~l~~~~~l~G  127 (249)
                      .+++.+...+...+.+++.+++.||+++|+.       +.+|.++.+++.+...     +.     .+.++++...++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            3566666777788999999999999999973       6677777766654321     11     35677888899999


Q ss_pred             hhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHH
Q psy6455         128 FAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLA  207 (249)
Q Consensus       128 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  207 (249)
                      +|.+...+....++.+..|++.++.++++++....+|..++..++.......... +.......+.+.|...++..++..
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~  469 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNIT-DPLETLPVYTNVFGKIGLVTLGVA  469 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-cchhhhhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988887663111000 000011135566777776666665


Q ss_pred             HHhhc
Q psy6455         208 LWLTR  212 (249)
Q Consensus       208 ~~~~~  212 (249)
                      ++.+.
T Consensus       470 v~~~~  474 (489)
T PRK10207        470 VVMAL  474 (489)
T ss_pred             HHHHH
Confidence            55443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.83  E-value=5.7e-12  Score=107.61  Aligned_cols=161  Identities=16%  Similarity=0.086  Sum_probs=103.8

Q ss_pred             HHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH--h---hhH----
Q psy6455          45 TVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS--V---AQY----  115 (249)
Q Consensus        45 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~--~---~~~----  115 (249)
                      .....+.+.+.++.+.+..  -.......+...++.++...+.||+|||++++.+.++.+++.+.+.  .   .++    
T Consensus       270 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (451)
T PF00083_consen  270 NFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWW  347 (451)
T ss_pred             ccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3445566777777777766  2333344455667777778999999999999999988888777664  1   111    


Q ss_pred             HHHHHHHHHHHHhhhc-ccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHH
Q psy6455         116 YGVFLALRFINGFAVT-GTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNL  194 (249)
Q Consensus       116 ~~~l~~~~~l~G~~~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~  194 (249)
                      -...++.-.+..++.+ +..+....+..|.+|++.|.++.++......++..+++.+...+.+.           .+-..
T Consensus       348 ~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~-----------~~~~~  416 (451)
T PF00083_consen  348 SILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN-----------LGGWG  416 (451)
T ss_pred             ccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccc-----------ccccc
Confidence            1111222222222222 34566668899999999999999998888788888888877666522           23123


Q ss_pred             HHHHHHHHHHHHH-HHhhcccCChh
Q psy6455         195 FVTLVSVPSILLA-LWLTRFPESPK  218 (249)
Q Consensus       195 ~~~~~~~~~~~~~-~~~~~~~~~~~  218 (249)
                      .+.+.+++.++.. +..+++||+..
T Consensus       417 ~~~i~~~~~~i~~i~~~~~lpET~g  441 (451)
T PF00083_consen  417 VFLIFAGVCLIAIIFVYFFLPETKG  441 (451)
T ss_pred             cchhhHHHHHHHHhheeEEEeeCCC
Confidence            4444444444444 44666899853

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.82  E-value=1.7e-08  Score=64.58  Aligned_cols=80  Identities=25%  Similarity=0.369  Sum_probs=73.5

Q ss_pred             HHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy6455          40 AAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVF  119 (249)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l  119 (249)
                      .+.....+.+.+|.+.+|.++|.++.+++.+..++|+.+|++...++.++..+++.+..+++...+..+.+++.++.+.+
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            35667788899999999999999999999999999999999999999999899999999999999999999998877654

Note that many members are hypothetical proteins.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.76  E-value=5.8e-08  Score=79.39  Aligned_cols=150  Identities=14%  Similarity=0.076  Sum_probs=112.7

Q ss_pred             HHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy6455          44 ITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLAL  122 (249)
Q Consensus        44 ~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  122 (249)
                      ......+++.+..+ .|.+..+.+...+.+..+.++|..++.++..|+...|.+.+..++..+.++...++++... +.+
T Consensus       252 Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~-~~~  330 (422)
T COG0738         252 EVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVA-LYA  330 (422)
T ss_pred             HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHH-HHH
Confidence            33344444554444 8889999999999999999999999999999999999999999888888888888888554 455


Q ss_pred             HHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHH
Q psy6455         123 RFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVP  202 (249)
Q Consensus       123 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~  202 (249)
                      .++.|+..+..+|...+...+..+ ++ ....|..-....+|+++.|.+.|++.+.           .+-...+.....+
T Consensus       331 l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d~-----------~g~~~~~~~~pll  397 (422)
T COG0738         331 LFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIADM-----------FGIQLTFLIVPLL  397 (422)
T ss_pred             HHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHHh-----------hhhHHHHHHHHHH
Confidence            667888899999999999999998 33 3334444444567888999999999843           4555555544444


Q ss_pred             HHHHH
Q psy6455         203 SILLA  207 (249)
Q Consensus       203 ~~~~~  207 (249)
                      +.+..
T Consensus       398 c~lyV  402 (422)
T COG0738         398 CYLYV  402 (422)
T ss_pred             HHHHH
Confidence            43333

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.69  E-value=1.6e-06  Score=74.29  Aligned_cols=143  Identities=13%  Similarity=-0.028  Sum_probs=110.7

Q ss_pred             hhHHHHhHHHHHHHHHHHHhhhhhcc-hhHHHHHHHHHHHHHHHHHHhhhH---------------------HHHHHHHH
Q psy6455          66 GWLNAAPMLGMVFGSYFWGCLADTQG-RKITLIGALLVDGLCGIASSVAQY---------------------YGVFLALR  123 (249)
Q Consensus        66 ~~~~~~~~i~~~i~~~~~g~l~dr~G-rr~~~~~~~~~~~i~~~~~~~~~~---------------------~~~l~~~~  123 (249)
                      .+....+++...+.+++..++.+|+| ||++..++.++.+++.+...+..+                     .+..++..
T Consensus       308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  387 (477)
T TIGR01301       308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF  387 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence            34555566666677888899999999 477889998888888887765443                     36677788


Q ss_pred             HHHHhhhcccccccccccccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHH
Q psy6455         124 FINGFAVTGTLGICFPYLGEFQPTA--YREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSV  201 (249)
Q Consensus       124 ~l~G~~~g~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~  201 (249)
                      .+.|+..+..+..-++++++..+++  +.|..+|++|.+..+.+++..+..+.+.+..+         .+-.+.+.+.++
T Consensus       388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g---------~~~~~~~~~~gv  458 (477)
T TIGR01301       388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG---------GGNLPAFVVGAV  458 (477)
T ss_pred             HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC---------CCCeeHHHHHHH
Confidence            8999999999999999999999954  45999999999999999999988777654431         134567888888


Q ss_pred             HHHHHHHHhhc-ccCCh
Q psy6455         202 PSILLALWLTR-FPESP  217 (249)
Q Consensus       202 ~~~~~~~~~~~-~~~~~  217 (249)
                      .++++.+..++ +|+.+
T Consensus       459 ~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       459 AAFVSGLLALILLPRPR  475 (477)
T ss_pred             HHHHHHHHHHHhCCCCC
Confidence            88888877544 56543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.67  E-value=1.7e-06  Score=62.65  Aligned_cols=117  Identities=9%  Similarity=0.026  Sum_probs=95.7

Q ss_pred             CCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccc
Q psy6455          59 GMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICF  138 (249)
Q Consensus        59 ~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~  138 (249)
                      ++++..--.-.++.+....+..++.+.+.+++|.|+.++++.+...+-... .+-++.+.++.+-.+.|++.+...+...
T Consensus        33 ~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg  111 (156)
T PF05978_consen   33 SISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQG  111 (156)
T ss_pred             cccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhh
Confidence            344444444556667778888899999999999999999999988865443 3556778889999999999999999999


Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455         139 PYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI  176 (249)
Q Consensus       139 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~  176 (249)
                      .++.+..+++.|++..+++-.....+.++|.++.-.+.
T Consensus       112 ~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  112 TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988888888888887766553

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.66  E-value=3.1e-06  Score=72.71  Aligned_cols=151  Identities=16%  Similarity=0.078  Sum_probs=104.8

Q ss_pred             hhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHH-HHHHHHHHHHHHhh-h-HHHHHHHHHHHHHhhhccccccccccc
Q psy6455          65 KGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGA-LLVDGLCGIASSVA-Q-YYGVFLALRFINGFAVTGTLGICFPYL  141 (249)
Q Consensus        65 ~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~-~~~~~i~~~~~~~~-~-~~~~l~~~~~l~G~~~g~~~~~~~~~~  141 (249)
                      .++..++..+..++..|+.|.++|+-|+||.++.. ..+..++..++.+. + +++...+..++.-++.+......++++
T Consensus        72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L  151 (477)
T PF11700_consen   72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL  151 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46778888889999999999999999988766654 44444555555553 3 344444555555677888889999999


Q ss_pred             ccccccchh--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHH
Q psy6455         142 GEFQPTAYR--------------------------EKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLF  195 (249)
Q Consensus       142 ~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~  195 (249)
                      .|+.+++.+                          ++..+.-.....+|+++.-.+.-.+.......   ..+..+.|..
T Consensus       152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~---~~~~~~~r~~  228 (477)
T PF11700_consen  152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST---ASNTWAIRVA  228 (477)
T ss_pred             HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc---cccchhhhHH
Confidence            999999888                          78888866677788877776655553222111   1123456888


Q ss_pred             HHHHHHHHHHHHHH-hhcccCChh
Q psy6455         196 VTLVSVPSILLALW-LTRFPESPK  218 (249)
Q Consensus       196 ~~~~~~~~~~~~~~-~~~~~~~~~  218 (249)
                      +.+.++.-++..+. .+++||.|+
T Consensus       229 ~~~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  229 FLIVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCC
Confidence            88888777666665 455677654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.63  E-value=1.7e-07  Score=76.25  Aligned_cols=101  Identities=20%  Similarity=0.130  Sum_probs=79.2

Q ss_pred             hhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-----Ccc
Q psy6455         112 VAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIE-----TPY  186 (249)
Q Consensus       112 ~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~-----~~~  186 (249)
                      ...+++.++++.++.|.|.+..++..++++++..++|++++.+++.+..+++|..++|.+++.+........     ...
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            457899999999999999999999999999999999999999999999999999999999998874321100     000


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455         187 FLYSSWNLFVTLVSVPSILLALWLTR  212 (249)
Q Consensus       187 ~~~~~w~~~~~~~~~~~~~~~~~~~~  212 (249)
                      .+...|+++|++.+.+.++..+.+.+
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~  111 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAF  111 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            01257999999776665555554434

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG4686|consensus

Probab=98.56  E-value=1.7e-08  Score=78.81  Aligned_cols=150  Identities=15%  Similarity=0.007  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHHH
Q psy6455          28 ILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT-QGRKITLIGALLVDGLC  106 (249)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~  106 (249)
                      ..++.+++..+...+++........++..+.+++.++..++.+.++.-..+-..++|++.|| +|.|..-++-.++..++
T Consensus        44 m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~G  123 (459)
T KOG4686|consen   44 MALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLG  123 (459)
T ss_pred             HHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHH
Confidence            33444555555555666555666677778888888899999999999999999999999996 67776555555555556


Q ss_pred             HHHHH---hhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455         107 GIASS---VAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP  177 (249)
Q Consensus       107 ~~~~~---~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~  177 (249)
                      -++.+   ..+.+|.+.++|++.|+|.-......+.|..-++..++.+.++|+......+|+.+--.+.+++.+
T Consensus       124 qliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~  197 (459)
T KOG4686|consen  124 QLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYD  197 (459)
T ss_pred             HHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHH
Confidence            55543   467899999999999998777778889999999999999999999888888888776666666653

>KOG2533|consensus

Probab=98.54  E-value=1.4e-07  Score=80.95  Aligned_cols=141  Identities=16%  Similarity=0.080  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhh----cchhHHHHHHHHHHH
Q psy6455          30 VIFGGLLYAYAAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT----QGRKITLIGALLVDG  104 (249)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr----~Grr~~~~~~~~~~~  104 (249)
                      +....++.++.....+.....+|.+.++ .|.|..++..+.+.+.++.+++.+++|.++||    ..+|..+.....+..
T Consensus       275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~  354 (495)
T KOG2533|consen  275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYA  354 (495)
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            4455566666677777788888887777 67999999999999999999999999999999    677777776666655


Q ss_pred             HHH-HHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHH-HHHHHHHHHHHHHHH
Q psy6455         105 LCG-IASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLC-WLEMFWTGGIIVLPA  170 (249)
Q Consensus       105 i~~-~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~~g~~~~~~  170 (249)
                      +.. ......++........+....+.+...+......++....+.|..... ....+.+.++.++|.
T Consensus       355 ~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~  422 (495)
T KOG2533|consen  355 IIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQ  422 (495)
T ss_pred             HHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhh
Confidence            544 444333333333333444444556667777788888876665544333 344444444444433

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.54  E-value=4.8e-07  Score=57.36  Aligned_cols=66  Identities=26%  Similarity=0.377  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q psy6455          37 YAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV  102 (249)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~  102 (249)
                      ++..........+++|.+.++.|+|..++|.+.++..+...++.+++|.++||+++++..+....+
T Consensus         9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    9 YFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            333444566677888888899999999999999999999999999999999999999887766544

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.48  E-value=1.4e-06  Score=74.23  Aligned_cols=153  Identities=13%  Similarity=0.105  Sum_probs=112.1

Q ss_pred             hhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcc----hhH-HHHHHHHHHHHHHHHHHhh----hHHHHH
Q psy6455          49 FVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQG----RKI-TLIGALLVDGLCGIASSVA----QYYGVF  119 (249)
Q Consensus        49 ~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~G----rr~-~~~~~~~~~~i~~~~~~~~----~~~~~l  119 (249)
                      ...|.+.+++|+++++...+.+...+.. ..-++.|.++|.+-    ||| -++++.++..++.+.++..    .+....
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~   89 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA   89 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence            3455677889999999988888877766 55789999999773    444 4555666665555544443    245666


Q ss_pred             HHHHHHHHhhhccccccccccccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHH
Q psy6455         120 LALRFINGFAVTGTLGICFPYLGEFQ--PTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVT  197 (249)
Q Consensus       120 ~~~~~l~G~~~g~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~  197 (249)
                      .+..++..+|........-+.+.|..  .++.|+...+.......+|.+++..++|.+.           +..+++..|.
T Consensus        90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~-----------~~~~~~~~f~  158 (433)
T PF03092_consen   90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLL-----------DSFGPQGVFL  158 (433)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh-----------hcCCCeEEeh
Confidence            66777788888888888888888887  3334788888888889999999999999887           3457777888


Q ss_pred             HHHHHHHHHHHHhhcc
Q psy6455         198 LVSVPSILLALWLTRF  213 (249)
Q Consensus       198 ~~~~~~~~~~~~~~~~  213 (249)
                      +.+++.++..+..+++
T Consensus       159 i~~~~~~l~~~~~~~~  174 (433)
T PF03092_consen  159 ISAALPLLMLIVALFL  174 (433)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8877777666554444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.48  E-value=3.9e-06  Score=69.81  Aligned_cols=157  Identities=13%  Similarity=-0.003  Sum_probs=120.2

Q ss_pred             cccccc-cCCCCcchh-hHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q psy6455          52 PSAQCD-FGMTSSDKG-WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFA  129 (249)
Q Consensus        52 ~~~~~~-~~~s~~~~~-~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~  129 (249)
                      |++.+. .|++..++. -+.=...-.+....++...+.|..+.|++++++.+...+...+..+.++...+-+..+..|++
T Consensus        28 ~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~  107 (412)
T PF01770_consen   28 PYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLA  107 (412)
T ss_pred             HHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence            333443 677766653 233333345677888999999999999999999999999989999999999999999999998


Q ss_pred             hcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH
Q psy6455         130 VTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW  209 (249)
Q Consensus       130 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  209 (249)
                      .+. .....+|+-...|+++--++.+......-+|..++..++-.+...         +..+++...++......++.++
T Consensus       108 ~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~---------~~~sy~~L~~isl~~~~~a~~~  177 (412)
T PF01770_consen  108 TAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF---------GGVSYFQLNYISLASVSLALLI  177 (412)
T ss_pred             HHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHHHHHH
Confidence            665 667778888888998888888888887777878887777777643         2346777777777766777777


Q ss_pred             hhcccCChh
Q psy6455         210 LTRFPESPK  218 (249)
Q Consensus       210 ~~~~~~~~~  218 (249)
                      .+++|..++
T Consensus       178 ~~fLP~~~~  186 (412)
T PF01770_consen  178 ALFLPMPKR  186 (412)
T ss_pred             HHHcCCCCc
Confidence            777776543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG0255|consensus

Probab=98.41  E-value=7.9e-06  Score=71.35  Aligned_cols=137  Identities=20%  Similarity=0.204  Sum_probs=96.6

Q ss_pred             HHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHhhhcccccccccccccccc
Q psy6455          70 AAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYG---VFLALRFINGFAVTGTLGICFPYLGEFQP  146 (249)
Q Consensus        70 ~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~---~l~~~~~l~G~~~g~~~~~~~~~~~~~~~  146 (249)
                      ..............+.+.|++|||.....+.++..++.+...+..+..   ...+...+..++.+..+.....+.+|.+|
T Consensus       357 ~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p  436 (521)
T KOG0255|consen  357 TLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIP  436 (521)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            333334555556668999999999999999999999999888765432   34444455555556666667899999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH-hhcccCChh
Q psy6455         147 TAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW-LTRFPESPK  218 (249)
Q Consensus       147 ~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~  218 (249)
                      +..|..+.+.......+|.+++|.+........          ..+  .+.+.+....+..++ ..++||+..
T Consensus       437 t~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~----------~~~--~~~~~~~~~~l~~~~~~~~lpet~~  497 (521)
T KOG0255|consen  437 TVVRNTAVGAISAAARLGSILAPLFPLLLRQMF----------PLL--GLILFGWLALLLGLLSLLLLPETKG  497 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----------ccc--hHHHHHHHHHHHHHHHHhcCcccCC
Confidence            999999999999999999999999876654211          112  222234444444433 477888754

>KOG2816|consensus

Probab=98.41  E-value=6e-06  Score=70.43  Aligned_cols=124  Identities=15%  Similarity=0.037  Sum_probs=110.2

Q ss_pred             cccccCCCCcchhhHHHHhHHHHHHHHHHHH-hhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcc
Q psy6455          54 AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWG-CLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTG  132 (249)
Q Consensus        54 ~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g-~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~  132 (249)
                      ....++++..+.+...+...+...+++.+.. .+...+|-|+++..|+....+.....+++.+.|+......+.++. +.
T Consensus       268 l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~~  346 (463)
T KOG2816|consen  268 LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-GI  346 (463)
T ss_pred             EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-cc
Confidence            3445999999999999998888889988777 788889999999999999999999999999999988888888775 67


Q ss_pred             cccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy6455         133 TLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL  178 (249)
Q Consensus       133 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~  178 (249)
                      ..+...+.++.+.+++++|+..++.+....+..+++|.+-+.+...
T Consensus       347 ~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~  392 (463)
T KOG2816|consen  347 VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL  392 (463)
T ss_pred             hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence            7899999999999999999999999999999999999988777543

>KOG0637|consensus

Probab=98.36  E-value=3.4e-07  Score=75.97  Aligned_cols=144  Identities=15%  Similarity=0.066  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhh----hcchhHHHHHH-HHHHHHH
Q psy6455          32 FGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD----TQGRKITLIGA-LLVDGLC  106 (249)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~d----r~Grr~~~~~~-~~~~~i~  106 (249)
                      ......+...+.+..=..+.+.+.++.|++....+.+-...-+...+.+++.|..+|    |+||||.++.. .+..+++
T Consensus        36 ~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~  115 (498)
T KOG0637|consen   36 SVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVS  115 (498)
T ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHH
Confidence            333344444555555556777788899999999998888888889999999999999    68999977765 4555666


Q ss_pred             HHHHHhhhHH-----------------HHHHHHHHHHHhhhcccccccccccccccccchhHH-HHHHHHHHHHHHHHHH
Q psy6455         107 GIASSVAQYY-----------------GVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREK-VLCWLEMFWTGGIIVL  168 (249)
Q Consensus       107 ~~~~~~~~~~-----------------~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~  168 (249)
                      .+++.++.++                 ..++++.-+.=++....+.+.-+++.|....+++.+ +.+.+....++|+.+|
T Consensus       116 l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLG  195 (498)
T KOG0637|consen  116 LFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLG  195 (498)
T ss_pred             HhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceee
Confidence            6666665433                 344445555556666788889999999998887777 9999999999999999


Q ss_pred             HHHHHHH
Q psy6455         169 PAVAWLL  175 (249)
Q Consensus       169 ~~l~~~l  175 (249)
                      ..++++.
T Consensus       196 Y~~g~y~  202 (498)
T KOG0637|consen  196 YALGSYL  202 (498)
T ss_pred             eeccccc
Confidence            8887644

>PTZ00207 hypothetical protein; Provisional

Probab=98.34  E-value=8.7e-06  Score=71.40  Aligned_cols=158  Identities=11%  Similarity=-0.099  Sum_probs=107.5

Q ss_pred             ccccccc-CCCCcc--hhhHHHHhHHHHHHHHHHHHhhhhh---------cchhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy6455          52 PSAQCDF-GMTSSD--KGWLNAAPMLGMVFGSYFWGCLADT---------QGRKITLIGALLVDGLCGIASSVAQYYGVF  119 (249)
Q Consensus        52 ~~~~~~~-~~s~~~--~~~~~~~~~i~~~i~~~~~g~l~dr---------~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l  119 (249)
                      .++.+.+ |.+.+.  .....+.++++..+|.+..|.++..         +.|--.+.+..+ ..++.+++.+.-....+
T Consensus       377 ~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L  455 (591)
T PTZ00207        377 RFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAAL  455 (591)
T ss_pred             HHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHh
Confidence            3455666 653322  2337889999999999999988722         222222333333 55555555544333678


Q ss_pred             HHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHH-HHHHHHHhccccccc----CcccccchhHH
Q psy6455         120 LALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVL-PAVAWLLIPLNLRIE----TPYFLYSSWNL  194 (249)
Q Consensus       120 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~l~~~l~~~~~~~~----~~~~~~~~w~~  194 (249)
                      .+..++.|++.|...+.....++|+|. ++-|+-..+......+|+.+- -.+.|.+.+......    |.  ...=++.
T Consensus       456 ~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~--G~~C~~~  532 (591)
T PTZ00207        456 PLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCT--ERVCVVM  532 (591)
T ss_pred             HHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeC--CceeeHh
Confidence            999999999999999999999999999 888998888888888888776 556777764332110    10  1112678


Q ss_pred             HHHHHHHHHHHHHHHhhcc
Q psy6455         195 FVTLVSVPSILLALWLTRF  213 (249)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~  213 (249)
                      .|++.+.+++++.+....+
T Consensus       533 ~~~v~~~~~~~g~~~s~~l  551 (591)
T PTZ00207        533 PLAFLLGLSFLAFITSTYV  551 (591)
T ss_pred             HHHHHHHHHHHHHHHHhhe
Confidence            8999988888888774443

>KOG2563|consensus

Probab=98.22  E-value=1.8e-05  Score=65.95  Aligned_cols=177  Identities=18%  Similarity=0.089  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcch-hHHHHHHHHHHHHHHHHH
Q psy6455          32 FGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGR-KITLIGALLVDGLCGIAS  110 (249)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~~  110 (249)
                      +..+++......++.+...+....+.-|.+....|++.....++.++++.+.|.+.||... |.+.++......++....
T Consensus       270 il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l  349 (480)
T KOG2563|consen  270 ILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLML  349 (480)
T ss_pred             HHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            3333333333444555555554555667777899999999999999999999999999865 556666666666653222


Q ss_pred             -Hhh---hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc
Q psy6455         111 -SVA---QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPY  186 (249)
Q Consensus       111 -~~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~  186 (249)
                       .+.   ...+.+...-.+.|++..+.+|+..-+-.|..-|..=+...|+.+....+-+++-..+-+...+..       
T Consensus       350 ~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~-------  422 (480)
T KOG2563|consen  350 LTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDL-------  422 (480)
T ss_pred             HHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhcc-------
Confidence             221   234455666677888888889999999999876666667777776665555555556655554332       


Q ss_pred             cccch-hHHHHHHHHHHHHHHHHHhhcccCC
Q psy6455         187 FLYSS-WNLFVTLVSVPSILLALWLTRFPES  216 (249)
Q Consensus       187 ~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~  216 (249)
                       ...+ |...-+......++.+.+..+++++
T Consensus       423 -~~~~~~~~~~i~~~~~~~l~~~lva~~r~~  452 (480)
T KOG2563|consen  423 -GPPGNTFPANIFLTVSALLGAILVAFFRPD  452 (480)
T ss_pred             -CCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence             1112 3333444445555555555555543

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.22  E-value=0.00043  Score=59.33  Aligned_cols=151  Identities=7%  Similarity=-0.051  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccccc-ccCCCCcchhhHHHHhHHHHHHH-HHHHHhhhhhcchhHHHHHHHHHHH
Q psy6455          27 YILVIFGGLLYAYAAISITVLSFVLPSAQC-DFGMTSSDKGWLNAAPMLGMVFG-SYFWGCLADTQGRKITLIGALLVDG  104 (249)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~i~~~i~-~~~~g~l~dr~Grr~~~~~~~~~~~  104 (249)
                      ++.++.+.+..++..+.+++.-+.-..+.- ..+.+.+...++-+...+...+. .++.+++++|++|++++-+....+.
T Consensus         6 ~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~   85 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFL   85 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHH
Confidence            344455555556656666655554433321 12334457788888777776666 8999999999999998887766666


Q ss_pred             HHHHHHHhh--h-----------------------------HHHHHHHHHHHHHhhhccccc-ccccccccccccchhHH
Q psy6455         105 LCGIASSVA--Q-----------------------------YYGVFLALRFINGFAVTGTLG-ICFPYLGEFQPTAYREK  152 (249)
Q Consensus       105 i~~~~~~~~--~-----------------------------~~~~l~~~~~l~G~~~g~~~~-~~~~~~~~~~~~~~r~~  152 (249)
                      ....+..+.  +                             +.|...+..+...+-.....+ .-+.+++|.+..++-.+
T Consensus        86 ~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakR  165 (472)
T TIGR00769        86 GFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKR  165 (472)
T ss_pred             HHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            555544432  0                             012222333344443333344 67889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455         153 VLCWLEMFWTGGIIVLPAVAWLLIP  177 (249)
Q Consensus       153 ~~~~~~~~~~~g~~~~~~l~~~l~~  177 (249)
                      ..+++..+.++|..+++.+..++.+
T Consensus       166 fy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       166 FYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888763

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.12  E-value=0.00028  Score=60.92  Aligned_cols=143  Identities=4%  Similarity=-0.040  Sum_probs=96.4

Q ss_pred             chhhHHHHhHHHHHHHHHHHHhhhhhcch--hH-----HHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHHH
Q psy6455          64 DKGWLNAAPMLGMVFGSYFWGCLADTQGR--KI-----TLIGALLVDGLCGIASSVA---------QYYGVFLALRFING  127 (249)
Q Consensus        64 ~~~~~~~~~~i~~~i~~~~~g~l~dr~Gr--r~-----~~~~~~~~~~i~~~~~~~~---------~~~~~l~~~~~l~G  127 (249)
                      ..+|..+...+...+.+|+.+++=.|.+|  |.     =+.+|+++.+++.+.+.+.         .+.+++++..++.+
T Consensus       309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t  388 (493)
T PRK15462        309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG  388 (493)
T ss_pred             CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            36788888888888888888887666633  21     1556777777776555431         25677889999999


Q ss_pred             hhhcccccccccccccccccchhHHHHHHHHHH-HHHHHHHHHHHHHHHhcccccccCc-ccccchhHHHHHHHHHHHHH
Q psy6455         128 FAVTGTLGICFPYLGEFQPTAYREKVLCWLEMF-WTGGIIVLPAVAWLLIPLNLRIETP-YFLYSSWNLFVTLVSVPSIL  205 (249)
Q Consensus       128 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~l~~~l~~~~~~~~~~-~~~~~~w~~~~~~~~~~~~~  205 (249)
                      +|.-...|+..+.+++..|++.|+..+|.+... ..+|..++..+++...........+ ..+...+...|...+...++
T Consensus       389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  468 (493)
T PRK15462        389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALA  468 (493)
T ss_pred             HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998653 3567666666665542111000000 00112456667776666555


Q ss_pred             H
Q psy6455         206 L  206 (249)
Q Consensus       206 ~  206 (249)
                      .
T Consensus       469 ~  469 (493)
T PRK15462        469 C  469 (493)
T ss_pred             H
Confidence            5

>KOG2615|consensus

Probab=98.08  E-value=3.5e-05  Score=63.02  Aligned_cols=147  Identities=15%  Similarity=0.057  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcc--hhHHHHHHHHHHHHHHH
Q psy6455          32 FGGLLYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQG--RKITLIGALLVDGLCGI  108 (249)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~i~~~  108 (249)
                      ...+..+........+....+.+ ...+|.++.+.|-+.+...+++.+.+....+..||..  -+-.+..+..+..-...
T Consensus       265 i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~l  344 (451)
T KOG2615|consen  265 IFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFL  344 (451)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHH
Confidence            33344444444444444444444 3569999999999999999999999999999999887  66677777777766667


Q ss_pred             HHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy6455         109 ASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPL  178 (249)
Q Consensus       109 ~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~  178 (249)
                      +.+.++....+..+..+..++.+...+....++....|.++||...|+......++-.+||.++|.+...
T Consensus       345 lls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  345 LLSLARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             HHhccccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence            7777888888888889999988888888889999999999999999999999999999999999888643

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.95  E-value=0.00015  Score=60.23  Aligned_cols=154  Identities=11%  Similarity=-0.011  Sum_probs=102.0

Q ss_pred             chhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHH-HHHHHHHHHHHHHhhhH---HHHHHHHHHHHHhhhccccccccc
Q psy6455          64 DKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIG-ALLVDGLCGIASSVAQY---YGVFLALRFINGFAVTGTLGICFP  139 (249)
Q Consensus        64 ~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~i~~~~~~~~~~---~~~l~~~~~l~G~~~g~~~~~~~~  139 (249)
                      ..+...++..+..++-+|+.|..+|+.|+||..+. ...+..++.+.+.+.++   ++..++...+..++.........+
T Consensus        59 ~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds  138 (438)
T COG2270          59 YWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDS  138 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhh
Confidence            45677788888889999999999999998876554 45555556666666543   445556667888888888999999


Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHHH--HHHhc-ccccc----cCcccccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455         140 YLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVA--WLLIP-LNLRI----ETPYFLYSSWNLFVTLVSVPSILLALWLTR  212 (249)
Q Consensus       140 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~--~~l~~-~~~~~----~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  212 (249)
                      ++.+..++++.++..++-.....+|+.+.-++.  ..+.. .....    .-+..+...-|..+.+.++..++..+..++
T Consensus       139 ~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~  218 (438)
T COG2270         139 MLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMIL  218 (438)
T ss_pred             HhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHh
Confidence            999999998888887775444555665554432  11111 00000    001113345688888888877777766444


Q ss_pred             -ccCCh
Q psy6455         213 -FPESP  217 (249)
Q Consensus       213 -~~~~~  217 (249)
                       .++.+
T Consensus       219 ~v~~~~  224 (438)
T COG2270         219 NVHDAE  224 (438)
T ss_pred             cccccc
Confidence             45543

>KOG1237|consensus

Probab=97.91  E-value=0.0006  Score=59.91  Aligned_cols=155  Identities=14%  Similarity=0.104  Sum_probs=118.0

Q ss_pred             HHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHHHHHHHHhhhH----------
Q psy6455          47 LSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT-QGRKITLIGALLVDGLCGIASSVAQY----------  115 (249)
Q Consensus        47 ~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~----------  115 (249)
                      ....+.++..++|.+...+.-..+.+.-......++++.++|- +||-+.+.++.++..++.++..++..          
T Consensus        57 ~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~  136 (571)
T KOG1237|consen   57 VSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCK  136 (571)
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Confidence            3455666777888887777777777777778888999999996 48999999999988888665443211          


Q ss_pred             ---------------HHHHHHHHHHHHhhhcccccccccccccccc---cc---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455         116 ---------------YGVFLALRFINGFAVTGTLGICFPYLGEFQP---TA---YREKVLCWLEMFWTGGIIVLPAVAWL  174 (249)
Q Consensus       116 ---------------~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~---~~---~r~~~~~~~~~~~~~g~~~~~~l~~~  174 (249)
                                     ...+..+..+..+|.|+.-+...++-+|-++   ++   .+...+.++....++|..++..+.-+
T Consensus       137 ~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vy  216 (571)
T KOG1237|consen  137 FKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVY  216 (571)
T ss_pred             CCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHh
Confidence                           1355666677788999999999999999998   32   22366777888889999999888877


Q ss_pred             HhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455         175 LIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTR  212 (249)
Q Consensus       175 l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  212 (249)
                      +-           ++.+|.+.|.+..+..+++.++.+.
T Consensus       217 iq-----------~~~~w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  217 IQ-----------DNVGWKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             hh-----------hcccceeeccHHHHHHHHHHHHHHc
Confidence            75           4569999998888877777666443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.87  E-value=6.3e-05  Score=62.88  Aligned_cols=109  Identities=13%  Similarity=0.109  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHHHhhhcccccccccccccccccc---hhHHHHHHHHHHH
Q psy6455          94 ITLIGALLVDGLCGIASSVAQ---------YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTA---YREKVLCWLEMFW  161 (249)
Q Consensus        94 ~~~~~~~~~~~i~~~~~~~~~---------~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~  161 (249)
                      |.++++.++..+|.++..++.         +.+.+.++.++.++|.|+.=+...++.+|.++++   +|.+...++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567788888888887744432         2367888999999999999999999999999876   4677777889999


Q ss_pred             HHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcc
Q psy6455         162 TGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRF  213 (249)
Q Consensus       162 ~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  213 (249)
                      ++|..+++.+.+++.           ++.+|.+.|.+.++..+++.+..+.-
T Consensus        82 n~G~~~~~~~~~~i~-----------~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQ-----------QNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHH-----------HCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhc-----------cccchhhhhhHHHHHHHHHHHHHHhC
Confidence            999999999998886           55799999999998888887765543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG4332|consensus

Probab=97.84  E-value=4.5e-05  Score=59.67  Aligned_cols=101  Identities=21%  Similarity=0.179  Sum_probs=76.9

Q ss_pred             HHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy6455          44 ITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALR  123 (249)
Q Consensus        44 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~  123 (249)
                      ...-.+++-++.++++....+++.+.....-..++...+.|.++|+-|||+..+.-.+-..++++ .-.++.+-.++++|
T Consensus        53 DWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR  131 (454)
T KOG4332|consen   53 DWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGR  131 (454)
T ss_pred             hhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehh
Confidence            34455667677888999999999888887778888999999999999999976655544444432 33467788899999


Q ss_pred             HHHHhhhccccccccc-cccccc
Q psy6455         124 FINGFAVTGTLGICFP-YLGEFQ  145 (249)
Q Consensus       124 ~l~G~~~g~~~~~~~~-~~~~~~  145 (249)
                      .+.|+.....+..--+ +++|..
T Consensus       132 ~LGGiaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen  132 VLGGIATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhh
Confidence            9999988877766655 455655

>KOG3574|consensus

Probab=97.81  E-value=0.00023  Score=58.33  Aligned_cols=143  Identities=13%  Similarity=0.067  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhh-----hcchhHHHHH-H
Q psy6455          26 HYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD-----TQGRKITLIG-A   99 (249)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~d-----r~Grr~~~~~-~   99 (249)
                      .++.+..+.+.+..++....... .+|.+.+.-|+|-++.+....++.  -.---++|.++.|     |+||||..++ +
T Consensus        29 d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~  105 (510)
T KOG3574|consen   29 DRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPC  105 (510)
T ss_pred             hhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeeh
Confidence            34456666778888888888877 889988888888777665544432  1233468888888     9999987654 2


Q ss_pred             HHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHH
Q psy6455         100 LLVDGLCGIASSV-----------AQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVL  168 (249)
Q Consensus       100 ~~~~~i~~~~~~~-----------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  168 (249)
                      ..+....+...+.           .++...+....++.-+..+.--..+=.+.-.+.++++-|.+......+...|..++
T Consensus       106 q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~  185 (510)
T KOG3574|consen  106 QYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLG  185 (510)
T ss_pred             HHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhh
Confidence            2333333333332           12333444455555665554445555677777888887777666666666666555


Q ss_pred             HHH
Q psy6455         169 PAV  171 (249)
Q Consensus       169 ~~l  171 (249)
                      ..+
T Consensus       186 ~~i  188 (510)
T KOG3574|consen  186 NVV  188 (510)
T ss_pred             cce
Confidence            443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.81  E-value=0.00066  Score=60.77  Aligned_cols=150  Identities=16%  Similarity=0.064  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccc-ccCCCCcchhhHHHHhHH-HHHHHHHHHHhhhhhcc--hhHHHHHHHHHHHH
Q psy6455          30 VIFGGLLYAYAAISITVLSFVLPSAQC-DFGMTSSDKGWLNAAPML-GMVFGSYFWGCLADTQG--RKITLIGALLVDGL  105 (249)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~i-~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~i  105 (249)
                      ++...+..+........+..++|.+.+ ++|.++.+++++.....+ +..++.+++|+++||++  .|+.+.++.++..+
T Consensus       332 f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~  411 (633)
T TIGR00805       332 YMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTL  411 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHH
Confidence            333444444445555556666776554 599999999999988776 67899999999999998  45666666666555


Q ss_pred             HHHHHH------------------------------h-------------------------------------------
Q psy6455         106 CGIASS------------------------------V-------------------------------------------  112 (249)
Q Consensus       106 ~~~~~~------------------------------~-------------------------------------------  112 (249)
                      +.++..                              -                                           
T Consensus       412 ~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y  491 (633)
T TIGR00805       412 SYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVY  491 (633)
T ss_pred             HHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCccee
Confidence            533311                              0                                           


Q ss_pred             ------------------h----hH-HHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHH-HHHHHHHHHH
Q psy6455         113 ------------------A----QY-YGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLE-MFWTGGIIVL  168 (249)
Q Consensus       113 ------------------~----~~-~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~  168 (249)
                                        .    ++ +..+++..++..+..+....+....+-...|+++|..++|+.. ....+|.+-+
T Consensus       492 ~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~  571 (633)
T TIGR00805       492 TNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPA  571 (633)
T ss_pred             cccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCCh
Confidence                              0    01 2233344444445445556666677788899999999999955 4567888999


Q ss_pred             HHHHHHHhccc
Q psy6455         169 PAVAWLLIPLN  179 (249)
Q Consensus       169 ~~l~~~l~~~~  179 (249)
                      |++-|++++..
T Consensus       572 pi~fG~~iD~s  582 (633)
T TIGR00805       572 PILFGLLIDVS  582 (633)
T ss_pred             hHHHhhhhhch
Confidence            99999998654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.70  E-value=0.00024  Score=60.60  Aligned_cols=154  Identities=15%  Similarity=0.094  Sum_probs=110.2

Q ss_pred             CCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHhh
Q psy6455          60 MTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV----------AQYYGVFLALRFINGFA  129 (249)
Q Consensus        60 ~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~----------~~~~~~l~~~~~l~G~~  129 (249)
                      .|+...+.+..+..++..+|..+..++.-+..-|+++.++.++.++..+.-..          .++.+..+..-++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            77778888888888999999999988888888899998888877766553221          11222233344555555


Q ss_pred             hcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH
Q psy6455         130 VTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW  209 (249)
Q Consensus       130 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  209 (249)
                      .+..+-+...+++|++|+..-|+..++.....++|..++..++..+.+......+   +..+-.+..++..+..++...+
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~---~f~~l~~lili~~~~~ll~l~l  408 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRD---DFSNLWLLILICSVIQLLPLPL  408 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc---cccchHHHHHHHHHHHHHHHHH
Confidence            5666667778999999999999999999999999999999999888765432221   2334445566666666666666


Q ss_pred             hhcccCC
Q psy6455         210 LTRFPES  216 (249)
Q Consensus       210 ~~~~~~~  216 (249)
                      ..++|+.
T Consensus       409 l~lLp~~  415 (433)
T PF03092_consen  409 LFLLPPQ  415 (433)
T ss_pred             HHHcCCC
Confidence            6667764

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.70  E-value=0.0012  Score=55.30  Aligned_cols=111  Identities=16%  Similarity=0.069  Sum_probs=80.2

Q ss_pred             CCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHH--HHH---HHHhhhHHHHHHHHHHHHHhhhccccc
Q psy6455          61 TSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL--CGI---ASSVAQYYGVFLALRFINGFAVTGTLG  135 (249)
Q Consensus        61 s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i--~~~---~~~~~~~~~~l~~~~~l~G~~~g~~~~  135 (249)
                      ..++..+....+.+|..++.--...+  |+  |++.+.+.+-.+-  ..+   ..-+.++.|..++.-+..|+..|..+.
T Consensus       279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV  354 (402)
T PF02487_consen  279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV  354 (402)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence            34566777788877766654432221  33  4444444332222  222   222457888888899999999999999


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455         136 ICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLL  175 (249)
Q Consensus       136 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l  175 (249)
                      -....+.|-.++++|..+++..+.+.++|..++.+++-.+
T Consensus       355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998888766

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3098|consensus

Probab=97.66  E-value=0.0028  Score=53.96  Aligned_cols=106  Identities=10%  Similarity=-0.014  Sum_probs=89.8

Q ss_pred             HHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccc
Q psy6455          69 NAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTA  148 (249)
Q Consensus        69 ~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~  148 (249)
                      .++.+....+..++.+.+.|+.|.|+.++++............+. |-+.++++..+.|+|.+..+.....+++|..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            677788889999999999999999999999999888776655544 4667789999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455         149 YREKVLCWLEMFWTGGIIVLPAVAWLL  175 (249)
Q Consensus       149 ~r~~~~~~~~~~~~~g~~~~~~l~~~l  175 (249)
                      .+.+..++.-.....+.++|..+...+
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~  161 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIY  161 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheee
Confidence            999999997777777777776554444

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.58  E-value=0.00042  Score=57.86  Aligned_cols=132  Identities=11%  Similarity=-0.077  Sum_probs=94.3

Q ss_pred             hhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccccccccccc
Q psy6455          66 GWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQ  145 (249)
Q Consensus        66 ~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~  145 (249)
                      +.+..+-.+-..+.-+++.++.+|+..+.=+..+.++.+++.++.+++++.+.-+++-.+.+++.|........+.+ .+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence            44555556667777788889999998766566677788889999999999998889999999998888777766644 55


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455         146 PTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTR  212 (249)
Q Consensus       146 ~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  212 (249)
                      ++    ...+-+..+.+.++++|...-..+....          .+.|..+.+...+.++..+.+++
T Consensus       141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g----------~s~~~tll~~~~lp~~~~~~~f~  193 (402)
T PF02487_consen  141 GK----SSLSAWSSGTGGAGLVGALYYLGLTTLG----------LSPRTTLLIMLVLPAIFLLSYFF  193 (402)
T ss_pred             Cc----cccccccCCcChhhHHHHHHHHHHHHhC----------cCHHHHHHHHHHHHHHHHHHHHH
Confidence            53    2466677777777888877665554321          34566777777666666555444

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3098|consensus

Probab=97.50  E-value=0.0062  Score=51.95  Aligned_cols=140  Identities=14%  Similarity=0.184  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHhhcccccc---ccCCCCc-chhhHHHHhHHHHHHHHHHHHhhh---hhcchhHHHHHHHHHHHHHH
Q psy6455          35 LLYAYAAISITVLSFVLPSAQC---DFGMTSS-DKGWLNAAPMLGMVFGSYFWGCLA---DTQGRKITLIGALLVDGLCG  107 (249)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~-~~~~~~~~~~i~~~i~~~~~g~l~---dr~Grr~~~~~~~~~~~i~~  107 (249)
                      ...+..+.....+....|.-..   ..+.+.. ..+.......++..++..+.+.++   +++||++.+.++.++..++.
T Consensus       247 ~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~  326 (461)
T KOG3098|consen  247 PFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGF  326 (461)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHH
Confidence            3334444444445545554222   2222222 223333444555556666666666   46789999999988888887


Q ss_pred             HHHHhh------------------hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q psy6455         108 IASSVA------------------QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLP  169 (249)
Q Consensus       108 ~~~~~~------------------~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  169 (249)
                      ++..+.                  ++.....+.-++.|++-+......+.++.+.. +++|..+.+++-.-..++..++-
T Consensus       327 ~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~  405 (461)
T KOG3098|consen  327 LLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAF  405 (461)
T ss_pred             HHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHh
Confidence            765532                  13456677778999999999999999999999 57788888888777777777665


Q ss_pred             HHHHHH
Q psy6455         170 AVAWLL  175 (249)
Q Consensus       170 ~l~~~l  175 (249)
                      ......
T Consensus       406 f~~~~~  411 (461)
T KOG3098|consen  406 FFSPYL  411 (461)
T ss_pred             hhhhhh
Confidence            554433

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.46  E-value=0.0034  Score=53.30  Aligned_cols=128  Identities=12%  Similarity=-0.006  Sum_probs=94.6

Q ss_pred             HhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHh---h---h----HHH
Q psy6455          48 SFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSV---A---Q----YYG  117 (249)
Q Consensus        48 ~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~---~----~~~  117 (249)
                      ...+..+...-|+++..+|..-+...+....+.....++.+|+|..|.=+++......+..++..   .   +    +..
T Consensus       278 ~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~  357 (432)
T PF06963_consen  278 GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAY  357 (432)
T ss_pred             cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHH
Confidence            33444455566999999999999999999999999999999999999888887766655544332   1   1    233


Q ss_pred             HHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455         118 VFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLL  175 (249)
Q Consensus       118 ~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l  175 (249)
                      .++.+-.+.=+|.=+..-...-++.|..|+++||...+..+...++..++...+.-.+
T Consensus       358 ~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  358 LLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3333333433555555666778999999999999999998888888888776665433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK03612 spermidine synthase; Provisional

Probab=97.41  E-value=0.0077  Score=52.65  Aligned_cols=118  Identities=11%  Similarity=0.018  Sum_probs=71.0

Q ss_pred             ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH---HHHHH----hhhHH-HHHHHHHHHHHh
Q psy6455          57 DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC---GIASS----VAQYY-GVFLALRFINGF  128 (249)
Q Consensus        57 ~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~---~~~~~----~~~~~-~~l~~~~~l~G~  128 (249)
                      -+|-+....+.+.+.+..|..+|+.+++++.++.-++.. .+-..+..++   ..+..    +.... ..+....++.++
T Consensus        44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~  122 (521)
T PRK03612         44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGL  122 (521)
T ss_pred             HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367777788999999999999999999988744333322 2211111111   11111    11111 122334456678


Q ss_pred             hhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6455         129 AVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI  176 (249)
Q Consensus       129 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~  176 (249)
                      ..|+..|....+..+... ++-+...|-......+|+++|.++.+++.
T Consensus       123 l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vL  169 (521)
T PRK03612        123 LIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLL  169 (521)
T ss_pred             HHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence            888877776665554322 22355677777788888888888877765

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.39  E-value=0.0072  Score=51.52  Aligned_cols=142  Identities=15%  Similarity=0.137  Sum_probs=95.5

Q ss_pred             chhhHHHHhHHHHHHHHHHHHhhhhhcchh-------HHHHHHHHHHHHHHHHHHhh----------hHHHHHHHHHHHH
Q psy6455          64 DKGWLNAAPMLGMVFGSYFWGCLADTQGRK-------ITLIGALLVDGLCGIASSVA----------QYYGVFLALRFIN  126 (249)
Q Consensus        64 ~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr-------~~~~~~~~~~~i~~~~~~~~----------~~~~~l~~~~~l~  126 (249)
                      ..+|..+...+...+.+++..++-.+.+++       .=+-++..+...+.++....          .+.++++...+++
T Consensus       325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~  404 (498)
T COG3104         325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ  404 (498)
T ss_pred             CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence            457778888888888888888888875544       22334444444444443322          2578899999999


Q ss_pred             HhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHH
Q psy6455         127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILL  206 (249)
Q Consensus       127 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  206 (249)
                      ++|.=...|+..+++....|+.-.+..++.+-.....|..++..+++.-...+     ...+.......|...+...++.
T Consensus       405 s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~-----~~~~~~~~~~~F~~~g~v~i~~  479 (498)
T COG3104         405 SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTD-----PAYTAFIEGRVFGTIGVVAIVI  479 (498)
T ss_pred             HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccc-----hhhhhhhhhhhHHHHHHHHHHH
Confidence            99999999999999999999998899999888777777777766655321100     0002223344566666655555


Q ss_pred             HHHh
Q psy6455         207 ALWL  210 (249)
Q Consensus       207 ~~~~  210 (249)
                      .+..
T Consensus       480 ~~~~  483 (498)
T COG3104         480 GILL  483 (498)
T ss_pred             HHHH
Confidence            5543

>KOG1330|consensus

Probab=97.34  E-value=0.00099  Score=56.07  Aligned_cols=121  Identities=15%  Similarity=0.084  Sum_probs=74.3

Q ss_pred             cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcch-------hHHHHHHH----HHHHHHHHHHH-hhhHHHHHHHHHHH
Q psy6455          58 FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGR-------KITLIGAL----LVDGLCGIASS-VAQYYGVFLALRFI  125 (249)
Q Consensus        58 ~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Gr-------r~~~~~~~----~~~~i~~~~~~-~~~~~~~l~~~~~l  125 (249)
                      .|.+..+..+...++..+..+|.+++|.++||+-|       .+.--+..    .+.+...++.. +..+...+.+..++
T Consensus       278 ~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~  357 (493)
T KOG1330|consen  278 IGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFL  357 (493)
T ss_pred             hCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            34455566667777888889999999999998433       22111111    11121111211 12233334445555


Q ss_pred             HHhhh-cccccccccccccccccchhHHHHHHHHHH-HHHHHHHHHHHHHHHhcc
Q psy6455         126 NGFAV-TGTLGICFPYLGEFQPTAYREKVLCWLEMF-WTGGIIVLPAVAWLLIPL  178 (249)
Q Consensus       126 ~G~~~-g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~l~~~l~~~  178 (249)
                      .|... -...+.......|..|+++|.++.++.... ..+|..-+|.+.|.+.+.
T Consensus       358 ~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~  412 (493)
T KOG1330|consen  358 VGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDK  412 (493)
T ss_pred             HHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHH
Confidence            66533 344677778899999999999999996544 456666677677777653

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.22  E-value=0.071  Score=45.62  Aligned_cols=157  Identities=9%  Similarity=-0.031  Sum_probs=102.5

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHH-HHHHHHHHHHhhhhhcchhHHHHH
Q psy6455          20 AGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPML-GMVFGSYFWGCLADTQGRKITLIG   98 (249)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i-~~~i~~~~~g~l~dr~Grr~~~~~   98 (249)
                      .+.++..+..++.+.+..++..+.....-..-..+.-. ..++....++=+..-+ +..+..++.+++.++..+.+++-.
T Consensus        19 wpi~r~E~~kflpl~Ll~f~I~~ny~~lR~lKDslvv~-~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~   97 (509)
T COG3202          19 WPIRRYELKKFLPLALLFFCILFNYNLLRSLKDSLVVT-RQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYI   97 (509)
T ss_pred             eeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheEee-cCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHH
Confidence            34566667777767777777666666555443333222 2345566677666666 678889999999999999998877


Q ss_pred             HHHHHHHHHHHHHhh---------------hH-----------------HHHHHHHHHHHHhhhcccc-ccccccccccc
Q psy6455          99 ALLVDGLCGIASSVA---------------QY-----------------YGVFLALRFINGFAVTGTL-GICFPYLGEFQ  145 (249)
Q Consensus        99 ~~~~~~i~~~~~~~~---------------~~-----------------~~~l~~~~~l~G~~~g~~~-~~~~~~~~~~~  145 (249)
                      -...+....+++++.               ++                 -|...+...+.-+-..... -.-.....|.+
T Consensus        98 ~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeit  177 (509)
T COG3202          98 ILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEIT  177 (509)
T ss_pred             HHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            666666555555431               10                 0222222222222112222 24566788999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455         146 PTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP  177 (249)
Q Consensus       146 ~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~  177 (249)
                      ..++-.+..++++.+.+++..++..+..++..
T Consensus       178 t~~eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         178 TIEEAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999888888753

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.18  E-value=0.13  Score=44.57  Aligned_cols=157  Identities=8%  Similarity=-0.015  Sum_probs=98.7

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHH-HHHHHHHHHHhhhhhcchhHHHHH
Q psy6455          20 AGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPML-GMVFGSYFWGCLADTQGRKITLIG   98 (249)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i-~~~i~~~~~g~l~dr~Grr~~~~~   98 (249)
                      .+..+..++-++.+.+..++..+.+...-..-..+.-+-. +++.+..+=....+ +..+...+..+++++++|++++-+
T Consensus        16 ~pi~~~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~-gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~   94 (491)
T PF03219_consen   16 WPIHRSELKKFLPLALMFFFILFNYTILRDLKDTLVVTAQ-GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYI   94 (491)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            3445666666777777777777776665555444322211 34444444443333 445667889999999999998776


Q ss_pred             HHHHHHHHHHHHHhh---------h----------------------HHHHHHHHHHHHHhhhccccc-ccccccccccc
Q psy6455          99 ALLVDGLCGIASSVA---------Q----------------------YYGVFLALRFINGFAVTGTLG-ICFPYLGEFQP  146 (249)
Q Consensus        99 ~~~~~~i~~~~~~~~---------~----------------------~~~~l~~~~~l~G~~~g~~~~-~~~~~~~~~~~  146 (249)
                      ....+.....+.++.         +                      +.|...+..+..-+-.....+ .-+.+..|.++
T Consensus        95 ~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt  174 (491)
T PF03219_consen   95 IIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITT  174 (491)
T ss_pred             HHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            655555444433321         0                      112222333333332222233 45788999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455         147 TAYREKVLCWLEMFWTGGIIVLPAVAWLLIP  177 (249)
Q Consensus       147 ~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~  177 (249)
                      .++-.+..+++..+.++|.+++..+..++.+
T Consensus       175 ~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  175 VEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888888875

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG2325|consensus

Probab=96.78  E-value=0.0016  Score=55.73  Aligned_cols=179  Identities=10%  Similarity=-0.013  Sum_probs=104.5

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccccCCCCcchhhHHHHh----HHHHHHHHHHHHhhh-hhcchh
Q psy6455          20 AGYGKFHYILVIFGGLLYAYAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAP----MLGMVFGSYFWGCLA-DTQGRK   93 (249)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~----~i~~~i~~~~~g~l~-dr~Grr   93 (249)
                      .+..+..|...+++.+..+...+....+....+. ....++.+.++.-+..+..    .+-.....+..+... -++.+|
T Consensus       254 ~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r  333 (488)
T KOG2325|consen  254 VKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKR  333 (488)
T ss_pred             hccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            3444556666666777777666666554444433 3445777777665544443    322333333333332 333446


Q ss_pred             HHHHHHHHHHHHHHHHHHh----h---------------------------hHHHHHHHHH-HHHHhhhccccccccccc
Q psy6455          94 ITLIGALLVDGLCGIASSV----A---------------------------QYYGVFLALR-FINGFAVTGTLGICFPYL  141 (249)
Q Consensus        94 ~~~~~~~~~~~i~~~~~~~----~---------------------------~~~~~l~~~~-~l~G~~~g~~~~~~~~~~  141 (249)
                      +.+..+.++......+...    .                           .+.+.++..+ ++.|.+.=.......+.-
T Consensus       334 ~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tly  413 (488)
T KOG2325|consen  334 RIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLY  413 (488)
T ss_pred             eeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHH
Confidence            6656554444433332211    0                           0112233332 445555555556677788


Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH
Q psy6455         142 GEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW  209 (249)
Q Consensus       142 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  209 (249)
                      +|...+++.+.+.++++....++..++|++.....           ...|.|++..+.....++...+
T Consensus       414 SkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~-----------~~~g~~~v~~~~~~~~l~~~~l  470 (488)
T KOG2325|consen  414 SKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIF-----------TLSGPRPVWIILLCLLLVVAAL  470 (488)
T ss_pred             HHHhCCccccceeEEEEeccchhhhhhHHHHhhhH-----------HhcCccHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999988876           3346677666665555555444

>KOG3626|consensus

Probab=96.62  E-value=0.067  Score=48.20  Aligned_cols=152  Identities=16%  Similarity=0.106  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccc-ccccCCCCcchhhHHHHhHH-HHHHHHHHHHhhhhhcc--hhHHHHHHHHHH
Q psy6455          28 ILVIFGGLLYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPML-GMVFGSYFWGCLADTQG--RKITLIGALLVD  103 (249)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i-~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~  103 (249)
                      ++++...+...+.......+..++|.+ +++|+.+.+.+..+.....+ +.++|..++|++..|+-  .|....+..+..
T Consensus       392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~  471 (735)
T KOG3626|consen  392 PIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCS  471 (735)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHH
Confidence            355666677777777777777888875 45699999999988865554 45788899999999875  344444444444


Q ss_pred             HHHHHH---HHh--------------------------------------------------------------------
Q psy6455         104 GLCGIA---SSV--------------------------------------------------------------------  112 (249)
Q Consensus       104 ~i~~~~---~~~--------------------------------------------------------------------  112 (249)
                      .+..+.   ..+                                                                    
T Consensus       472 ~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~  551 (735)
T KOG3626|consen  472 VLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTS  551 (735)
T ss_pred             HHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCC
Confidence            433333   111                                                                    


Q ss_pred             -----------hh--------------------HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHH-HH
Q psy6455         113 -----------AQ--------------------YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLE-MF  160 (249)
Q Consensus       113 -----------~~--------------------~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~  160 (249)
                                 .+                    .+..+++..++.-+..+...++....+-...++|+|..++|+.. ..
T Consensus       552 ~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~i  631 (735)
T KOG3626|consen  552 DGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLI  631 (735)
T ss_pred             CCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHH
Confidence                       00                    01233444444445555556777778889999999999999955 55


Q ss_pred             HHHHHHHHHHHHHHHhccc
Q psy6455         161 WTGGIIVLPAVAWLLIPLN  179 (249)
Q Consensus       161 ~~~g~~~~~~l~~~l~~~~  179 (249)
                      ..+|.+-+|++-|++++..
T Consensus       632 rllg~IPsPIifG~~ID~t  650 (735)
T KOG3626|consen  632 RLLGFIPSPIIFGAVIDTT  650 (735)
T ss_pred             HHHhcCCchHhhhhhHhhH
Confidence            6788899999999998765

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.46  E-value=0.00072  Score=59.24  Aligned_cols=151  Identities=17%  Similarity=0.116  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccc-ccccCCCCcchhhHHHHhHH-HHHHHHHHHHhhhhhcc--hhHHHHHHHHHH
Q psy6455          28 ILVIFGGLLYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPML-GMVFGSYFWGCLADTQG--RKITLIGALLVD  103 (249)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i-~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~  103 (249)
                      +.++...++.....+....+..++|.+ +.+|+.++++++++.....+ +.++|.+++|++..|+.  .|+.+.+..+..
T Consensus       305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~  384 (539)
T PF03137_consen  305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVS  384 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHH
Confidence            455566666666666677777777775 55699999999998877666 66889999999999875  344544444444


Q ss_pred             HHHHHHHH---h--h-------------------------------------------------hHHHHHHHHHHHHHhh
Q psy6455         104 GLCGIASS---V--A-------------------------------------------------QYYGVFLALRFINGFA  129 (249)
Q Consensus       104 ~i~~~~~~---~--~-------------------------------------------------~~~~~l~~~~~l~G~~  129 (249)
                      .++.+...   +  +                                                 +.+..+++..++.-+.
T Consensus       385 ~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~  464 (539)
T PF03137_consen  385 IVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFF  464 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHH
Confidence            44333211   0  0                                                 0112333444444444


Q ss_pred             hcccccccccccccccccchhHHHHHHHH-HHHHHHHHHHHHHHHHHhcc
Q psy6455         130 VTGTLGICFPYLGEFQPTAYREKVLCWLE-MFWTGGIIVLPAVAWLLIPL  178 (249)
Q Consensus       130 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l~~~  178 (249)
                      .+.........+-...|+++|..++|+.. ....+|.+-+|++-|.+.+.
T Consensus       465 ~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  465 TFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             --------------------------------------------------
T ss_pred             HHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            45555666666778889999999999965 45578888899998888743

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3762|consensus

Probab=96.33  E-value=0.00087  Score=57.43  Aligned_cols=73  Identities=19%  Similarity=0.205  Sum_probs=57.5

Q ss_pred             HHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHH-HHHHHHHHHHHHhh
Q psy6455          41 AISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGA-LLVDGLCGIASSVA  113 (249)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~-~~~~~i~~~~~~~~  113 (249)
                      +.....+.+.++.+.+++|+++.+.|.+...--+..+++.|++|.++||+-+||.++++ ++......+++.+.
T Consensus        24 ~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv   97 (618)
T KOG3762|consen   24 GARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV   97 (618)
T ss_pred             eecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence            34455566778888899999999999999999999999999999999999887766555 55555555555543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.21  E-value=0.31  Score=41.68  Aligned_cols=164  Identities=13%  Similarity=0.071  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHhhccccccccCC-CCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH--
Q psy6455          35 LLYAYAAISITVLSFVLPSAQCDFGM-TSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS--  111 (249)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~--  111 (249)
                      ...+......-.+.+..+.+..+..- +---.+.....-.+...++++..|.+.||..|.+++..+.+..-++.....  
T Consensus         9 ~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~   88 (432)
T PF06963_consen    9 LSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCAL   88 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555555555432 333344455555667788999999999999999887777655433322211  


Q ss_pred             ----hh--h-----H--HHHHHHHHHHHHh----h-hccccccccccccccc--ccchhHHHHHHHHHHHHHHHHHHHHH
Q psy6455         112 ----VA--Q-----Y--YGVFLALRFINGF----A-VTGTLGICFPYLGEFQ--PTAYREKVLCWLEMFWTGGIIVLPAV  171 (249)
Q Consensus       112 ----~~--~-----~--~~~l~~~~~l~G~----~-~g~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~g~~~~~~l  171 (249)
                          +.  +     +  ...+++.-.+.|.    + .+.....---++..+.  +++.+.+..+...-.--+..+++|++
T Consensus        89 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~  168 (432)
T PF06963_consen   89 FLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLF  168 (432)
T ss_pred             HHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                10  1     1  1111222222221    1 1111122222333333  44556666666666677899999999


Q ss_pred             HHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH
Q psy6455         172 AWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW  209 (249)
Q Consensus       172 ~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  209 (249)
                      .|.+..           ..+.+....+.++..++..+.
T Consensus       169 vG~l~t-----------~~s~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  169 VGLLMT-----------FASPVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             HHHHhh-----------ccCHHHHHHHHHHHHHHHHHH
Confidence            999973           346777777777777666655

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG1479|consensus

Probab=96.05  E-value=0.23  Score=41.75  Aligned_cols=88  Identities=16%  Similarity=0.149  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHH---HHHHhcccccccCcccccchh
Q psy6455         116 YGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAV---AWLLIPLNLRIETPYFLYSSW  192 (249)
Q Consensus       116 ~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l---~~~l~~~~~~~~~~~~~~~~w  192 (249)
                      +...++.-.+.+++.|..+.......+++ |+|.-...++-    .++++++...+   .....+.         +..+-
T Consensus       117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytqavm~G----~a~aG~l~Sl~~i~tka~~~~---------~~~sA  182 (406)
T KOG1479|consen  117 FLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQAVMSG----QALAGTLTSLLRILTKAAFSD---------SRTSA  182 (406)
T ss_pred             HHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHHHHHhc----chhHhHHHHHHHHHHHHhcCC---------CCcee
Confidence            45556666778888888888777666654 55554333332    22333332222   1111111         12333


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCh
Q psy6455         193 NLFVTLVSVPSILLALWLTRFPESP  217 (249)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~  217 (249)
                      ...|.+..++.+++.+++..+|+.|
T Consensus       183 ~~yF~~s~~~~llC~i~y~~l~~lp  207 (406)
T KOG1479|consen  183 LIYFITSTVILLLCFVLYLVLPKLP  207 (406)
T ss_pred             ehhHHHHHHHHHHHHHHHHHhhcch
Confidence            4456666666666666666566555

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=95.95  E-value=0.056  Score=46.38  Aligned_cols=144  Identities=13%  Similarity=0.020  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhccccccc--cCCCCcchhhHH---HHhHHHHHHHHHHHHhhhhhcchhHHHHHHH-HHHHH
Q psy6455          32 FGGLLYAYAAISITVLSFVLPSAQCD--FGMTSSDKGWLN---AAPMLGMVFGSYFWGCLADTQGRKITLIGAL-LVDGL  105 (249)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~---~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~-~~~~i  105 (249)
                      ++.+.++.++.........+|.+.++  -++|-++.+...   -.+++=..=..++=...+.|+||||..++=. .+.++
T Consensus         4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~   83 (544)
T PF13000_consen    4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGI   83 (544)
T ss_pred             HHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHH
Confidence            45566777777766655667887776  566666654432   2233222222222233455999999877532 33333


Q ss_pred             HHHHHHhhh------------------------HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHH
Q psy6455         106 CGIASSVAQ------------------------YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFW  161 (249)
Q Consensus       106 ~~~~~~~~~------------------------~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  161 (249)
                      .++..+...                        +...+....++.=+..+.---.+=.+.-.+.++++++.+..-.+.+.
T Consensus        84 ~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~  163 (544)
T PF13000_consen   84 LMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQ  163 (544)
T ss_pred             HHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHh
Confidence            333322111                        11123333333333333333334456667778888887777766667


Q ss_pred             HHHHHHHHHHHHHH
Q psy6455         162 TGGIIVLPAVAWLL  175 (249)
Q Consensus       162 ~~g~~~~~~l~~~l  175 (249)
                      +.|..++..+.-.+
T Consensus       164 ~~Gyfls~tvFlal  177 (544)
T PF13000_consen  164 TAGYFLSFTVFLAL  177 (544)
T ss_pred             hhhHHHHHHHHHhh
Confidence            77766665544333

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.62  E-value=0.5  Score=40.55  Aligned_cols=109  Identities=11%  Similarity=-0.054  Sum_probs=70.1

Q ss_pred             hhHHHHhHHHHHHHHHHHHhhhhhcchh--HHHHHHH--HHHHHHHHHHHh---------hhHHHHHHHHHHHHHhhhcc
Q psy6455          66 GWLNAAPMLGMVFGSYFWGCLADTQGRK--ITLIGAL--LVDGLCGIASSV---------AQYYGVFLALRFINGFAVTG  132 (249)
Q Consensus        66 ~~~~~~~~i~~~i~~~~~g~l~dr~Grr--~~~~~~~--~~~~i~~~~~~~---------~~~~~~l~~~~~l~G~~~g~  132 (249)
                      -.+...++++=.+|..+..+.. .-++|  ++++.+.  +++....++|..         .++-+..++..++.|+..|-
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy  388 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY  388 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence            3455666666667666554321 11222  3333222  223333333322         23445566778999999998


Q ss_pred             cccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455         133 TLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLL  175 (249)
Q Consensus       133 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l  175 (249)
                      ..+....+..+..++++|..+..+...+..+|..+|..++-.+
T Consensus       389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888899999999999998888888888888887775443

>KOG3097|consensus

Probab=95.49  E-value=0.46  Score=38.81  Aligned_cols=102  Identities=19%  Similarity=0.209  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccccccccccccc--chh
Q psy6455          73 MLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPT--AYR  150 (249)
Q Consensus        73 ~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~--~~r  150 (249)
                      .+..+...++.+.+..++|-|+.+.++....... +..-+-+.+..++..-...|++.+......-+|++++-..  ++|
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~  146 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQR  146 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhh
Confidence            3445566667778999999999999888777653 3334556788899999999999999999888898887644  234


Q ss_pred             ---------HH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy6455         151 ---------EK----VLCWLEMFWTGGIIVLPAVAWLL  175 (249)
Q Consensus       151 ---------~~----~~~~~~~~~~~g~~~~~~l~~~l  175 (249)
                               .+    ...+++....+|..++.++-...
T Consensus       147 ~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~~~~  184 (390)
T KOG3097|consen  147 GEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIMTLF  184 (390)
T ss_pred             hhhccCceeeeehhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     22    33445555555655555554443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.20  E-value=0.7  Score=39.67  Aligned_cols=96  Identities=14%  Similarity=0.040  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHH
Q psy6455         115 YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNL  194 (249)
Q Consensus       115 ~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~  194 (249)
                      .++..++.-++.|++.+..+.....+.+ .+|++.    +..+..+.+++++++..+.-......   .++.+...+-..
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~~s~~~ii~~a~~---~~~~~~~~~a~~  176 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVLTSLAMILVKASG---NDSHGLKKSALG  176 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHHHHHHHHHHHHhc---CCccchhhhhhh
Confidence            4566677778889998888888887776 455544    33344444445544443322211111   000001122233


Q ss_pred             HHHHHHHHHHHHHHHhhcccCChh
Q psy6455         195 FVTLVSVPSILLALWLTRFPESPK  218 (249)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~  218 (249)
                      .|.+..++.+++++++..+++.|.
T Consensus       177 YF~~a~~v~l~~i~~~~~l~k~~~  200 (437)
T TIGR00939       177 YFGTPCVVQLICIVCYLLLPKLPF  200 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHH
Confidence            455555556666666555665543

>KOG3810|consensus

Probab=93.33  E-value=0.24  Score=40.80  Aligned_cols=133  Identities=16%  Similarity=0.077  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHH
Q psy6455          75 GMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVL  154 (249)
Q Consensus        75 ~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~  154 (249)
                      .+.+.-.+.=.+.|-.-.|++++.-.+.....-.+..+.++.+.+-+.-+..|...+ .....++++-+..+++++-++.
T Consensus        54 SYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrvt  132 (433)
T KOG3810|consen   54 SYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKRVT  132 (433)
T ss_pred             HHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHHHH
Confidence            345556666678998888998888877777777778888899888888889898654 4666888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCCh
Q psy6455         155 CWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESP  217 (249)
Q Consensus       155 ~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  217 (249)
                      +..-...-.|..+|..++..+....         ..++...-.+...-..+..++..++|..+
T Consensus       133 ~y~RaA~L~g~~~g~vlaQlLvs~~---------~~sy~~LN~ISL~~~~ia~~~A~fLP~v~  186 (433)
T KOG3810|consen  133 GYCRAAFLVGKFVGSVLAQLLVSLE---------TLSYTTLNYISLAEVTIAVLLALFLPRVK  186 (433)
T ss_pred             HHhHHHHHHHhHHHhHHHHHHhhhc---------ccchhhhchhhHHHHHHHHHHHhhCCCCc
Confidence            9877777777777777777776432         24555555555555555555566666554

>KOG0637|consensus

Probab=93.14  E-value=0.21  Score=42.48  Aligned_cols=113  Identities=15%  Similarity=-0.038  Sum_probs=66.4

Q ss_pred             hhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcc-------------
Q psy6455          66 GWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTG-------------  132 (249)
Q Consensus        66 ~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~-------------  132 (249)
                      .|=..++.+...+.+....++.+|+|-|+.++.+...+.++.-+....++.+.....+-..|+-.+.             
T Consensus       335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~  414 (498)
T KOG0637|consen  335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA  414 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence            4556777888899999999999999976666666554555555555555544444444444433222             


Q ss_pred             --------cccccccccccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy6455         133 --------TLGICFPYLGEFQPTA--YREKVLCWLEMFWTGGIIVLPAVAWLLIPL  178 (249)
Q Consensus       133 --------~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~  178 (249)
                              .+.+-++..+......  .+|...++.+....+.+++...-.|.+.+.
T Consensus       415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~  470 (498)
T KOG0637|consen  415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQL  470 (498)
T ss_pred             HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhh
Confidence                    2222333332222222  235555667777777777766655555543

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=93.00  E-value=0.95  Score=38.33  Aligned_cols=98  Identities=15%  Similarity=-0.091  Sum_probs=73.0

Q ss_pred             CcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccccc
Q psy6455          62 SSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLI--GALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFP  139 (249)
Q Consensus        62 ~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~--~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~  139 (249)
                      ..--|.+-....+..+++++..|++..++++..-+.  ...++.+...+++...+++|...++.++.+.......+....
T Consensus       284 ~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~  363 (412)
T PF01770_consen  284 SVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASF  363 (412)
T ss_pred             cccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344588888888889999999999988887754444  334555566677788899999999998888777777777777


Q ss_pred             ccccccccchhHHHHHHHHH
Q psy6455         140 YLGEFQPTAYREKVLCWLEM  159 (249)
Q Consensus       140 ~~~~~~~~~~r~~~~~~~~~  159 (249)
                      -++.....+.-+...|+.++
T Consensus       364 qIA~~l~~e~yaLVFGiNtf  383 (412)
T PF01770_consen  364 QIAKNLSEERYALVFGINTF  383 (412)
T ss_pred             HHHHhccccceeeeeeeHHH
Confidence            77777776666666666443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG1479|consensus

Probab=92.11  E-value=0.64  Score=39.13  Aligned_cols=107  Identities=16%  Similarity=0.052  Sum_probs=72.2

Q ss_pred             hhhHHHH-hHHHHHHHHHHHHhhhhhcchhHHHHHHHH-HHHHHHHH-H------HhhhHHHHHHHHHHHHHhhhccccc
Q psy6455          65 KGWLNAA-PMLGMVFGSYFWGCLADTQGRKITLIGALL-VDGLCGIA-S------SVAQYYGVFLALRFINGFAVTGTLG  135 (249)
Q Consensus        65 ~~~~~~~-~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~-~~~i~~~~-~------~~~~~~~~l~~~~~l~G~~~g~~~~  135 (249)
                      ....... +++.-.+|.+.+.++-++= ||...+.... +..+-.+. |      .+..+-++.++...+.|+..|-...
T Consensus       284 ~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlts  362 (406)
T KOG1479|consen  284 ALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTS  362 (406)
T ss_pred             HHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhh
Confidence            3444555 7888888877777777654 3433333222 22222222 1      1234566778888999999998888


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy6455         136 ICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVA  172 (249)
Q Consensus       136 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~  172 (249)
                      ....+..+-.+++++..+..+.......|..+|..++
T Consensus       363 l~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  363 LIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             heehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            8889999999999988887777777777777776654

>KOG3880|consensus

Probab=91.17  E-value=0.16  Score=41.08  Aligned_cols=135  Identities=10%  Similarity=-0.081  Sum_probs=82.7

Q ss_pred             hhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccccccccccc
Q psy6455          65 KGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEF  144 (249)
Q Consensus        65 ~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~  144 (249)
                      .|.+..+-.+-..+..+.+..+.||+---.=+.+..++.+.+.++.+++++.++-+++-.+..++.|.....-..+.+. 
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~-  142 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR-  142 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-
Confidence            4555555566667777788888888754444455666788888899999999998888888888877766554444332 


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcc
Q psy6455         145 QPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRF  213 (249)
Q Consensus       145 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  213 (249)
                      +++.    ..+.++.+.+..+.+|..--..+.+.         ...+-+...++...+.++.++.++++
T Consensus       143 Y~~~----~i~~WSSGTGgAGliGa~SYa~lT~~---------~~~spk~Tlli~l~lP~lfa~~yf~l  198 (409)
T KOG3880|consen  143 YPSI----VIAGWSSGTGGAGLIGASSYAFLTSW---------ANLSPKSTLLIMLFLPALFAFAYFFL  198 (409)
T ss_pred             CCCc----eeccccCCCCcchhhhhhHHHHHhhh---------cCCChhhHHHHHHHHHHHHHHHHHhe
Confidence            3322    23333333344444444333333321         11456677777777666666665553

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=90.43  E-value=9.4  Score=31.85  Aligned_cols=86  Identities=19%  Similarity=0.134  Sum_probs=59.4

Q ss_pred             cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH----HH-Hh----hhHHHHHHHHHHHHHh
Q psy6455          58 FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGI----AS-SV----AQYYGVFLALRFINGF  128 (249)
Q Consensus        58 ~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~----~~-~~----~~~~~~l~~~~~l~G~  128 (249)
                      .|-+.-+.+.+.+.+..++.+|+...-++.|.--.-+.+.+-+++..++..    +. .|    .++-+.+.+..++.|.
T Consensus        38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~  117 (508)
T COG4262          38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGV  117 (508)
T ss_pred             cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            455566888999999999999999999988854433333333333333321    11 12    2466778888899999


Q ss_pred             hhccccccccccccc
Q psy6455         129 AVTGTLGICFPYLGE  143 (249)
Q Consensus       129 ~~g~~~~~~~~~~~~  143 (249)
                      -.|...|....++..
T Consensus       118 LVG~EiPL~mrml~~  132 (508)
T COG4262         118 LVGAEIPLLMRMLQR  132 (508)
T ss_pred             HHhcchHHHHHHHHH
Confidence            999999988887765

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=89.88  E-value=13  Score=32.48  Aligned_cols=73  Identities=8%  Similarity=-0.020  Sum_probs=51.1

Q ss_pred             HHHHHhhhcccccccccccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHH
Q psy6455         123 RFINGFAVTGTLGICFPYLGEFQPTA-YREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSV  201 (249)
Q Consensus       123 ~~l~G~~~g~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~  201 (249)
                      -++.|+.....+......+.|.+|.+ +|+..++-++...++...+..++++.+.           ...||.....+.-+
T Consensus       273 vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~-----------~~~Gw~~~a~i~Pi  341 (472)
T TIGR00769       273 VIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVI-----------RKYGWLTAALITPL  341 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhhHHHHHHHHHH
Confidence            34556666666777777788887654 5788888887777777766666667776           45699887777666


Q ss_pred             HHHHH
Q psy6455         202 PSILL  206 (249)
Q Consensus       202 ~~~~~  206 (249)
                      +.++.
T Consensus       342 i~lit  346 (472)
T TIGR00769       342 VMLLT  346 (472)
T ss_pred             HHHHH
Confidence            65553

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG4332|consensus

Probab=89.70  E-value=9.4  Score=30.76  Aligned_cols=134  Identities=12%  Similarity=0.060  Sum_probs=81.8

Q ss_pred             hhhHHHHhHHHHHHHHHHHHhhhhhcchhH--HHHHHHHHHHHHHHHHH----hhh---HHHHHHHHHHHHHhhhccccc
Q psy6455          65 KGWLNAAPMLGMVFGSYFWGCLADTQGRKI--TLIGALLVDGLCGIASS----VAQ---YYGVFLALRFINGFAVTGTLG  135 (249)
Q Consensus        65 ~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~--~~~~~~~~~~i~~~~~~----~~~---~~~~l~~~~~l~G~~~g~~~~  135 (249)
                      -|.+.+.+.++.++|+-+..++..|-..|.  .+.+..+.......+..    .++   +...-+++..+.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            488899999999999999998888766552  33333333333222211    122   233335666677778889999


Q ss_pred             ccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHH
Q psy6455         136 ICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALW  209 (249)
Q Consensus       136 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  209 (249)
                      ...-+=++..|.+.|...+.++-.-..+-.-++-    +-.+.+.       -..+-|..|-+..+...++.+.
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvL----ynlh~~~-------~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVL----YNLHVDA-------FPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhh----eeccccc-------CccccchhhhhhHHHHHHHHHH
Confidence            9999999999999999888876543332222211    1101110       1124566777777666666544

>TIGR00806 rfc RFC reduced folate carrier

Probab=89.52  E-value=5  Score=34.98  Aligned_cols=97  Identities=11%  Similarity=-0.078  Sum_probs=73.1

Q ss_pred             chhhHHHHhHHHHHHHHHHHHhhhhhcchh--HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccccccc
Q psy6455          64 DKGWLNAAPMLGMVFGSYFWGCLADTQGRK--ITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYL  141 (249)
Q Consensus        64 ~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr--~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~  141 (249)
                      .=|.+-.+..+..++.++..|++-.++.+-  ..+-+..++.+...+++..++|+|..+++.++.+.......++...-+
T Consensus       299 yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~i  378 (511)
T TIGR00806       299 YNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQI  378 (511)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666777777889999999998777553  333344455555567778889999999999999998888888888888


Q ss_pred             ccccccchhHHHHHHHHHH
Q psy6455         142 GEFQPTAYREKVLCWLEMF  160 (249)
Q Consensus       142 ~~~~~~~~r~~~~~~~~~~  160 (249)
                      ++....+.-|...|+.++.
T Consensus       379 A~~L~~~~~aLvFGiNtfv  397 (511)
T TIGR00806       379 ASSLSKELCALVFGINTFV  397 (511)
T ss_pred             HHHhcccceEEEEecHHHH
Confidence            8888777667777765543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=88.11  E-value=6.1  Score=26.85  Aligned_cols=43  Identities=21%  Similarity=0.267  Sum_probs=30.2

Q ss_pred             chhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q psy6455          64 DKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC  106 (249)
Q Consensus        64 ~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~  106 (249)
                      ..+.......++..++..+.+.+.|..|.+..+.+...+..+.
T Consensus        88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (141)
T TIGR00880        88 ALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA  130 (141)
T ss_pred             HHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence            3456667777888888888888888888777666555444443

>KOG3880|consensus

Probab=86.98  E-value=2.2  Score=34.83  Aligned_cols=106  Identities=14%  Similarity=0.030  Sum_probs=71.5

Q ss_pred             chhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHH-------HHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccc
Q psy6455          64 DKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV-------DGLCGIASSVAQYYGVFLALRFINGFAVTGTLGI  136 (249)
Q Consensus        64 ~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~-------~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~  136 (249)
                      +.-|....+.+|..+.     +-+-|+=+-+ ++..+.+       +.+.-.+..+.++++...+.-+.-|+-.|..+.-
T Consensus       289 qYRwyqvlYQlGVFiS-----RSS~~~~~~p-~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVN  362 (409)
T KOG3880|consen  289 QYRWYQVLYQLGVFIS-----RSSINLFTMP-YLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVN  362 (409)
T ss_pred             cchhhheeeeeeEEEE-----eccceEEech-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHH
Confidence            4678888888765432     2222222222 2222221       1222223446778888888888889987888888


Q ss_pred             cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455         137 CFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLL  175 (249)
Q Consensus       137 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l  175 (249)
                      ..--+.+-.++++|..+++.....-.+|..++.+++-.+
T Consensus       363 Tf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  363 TFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            888888888899999999999988888888887776544

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=84.82  E-value=0.24  Score=40.33  Aligned_cols=106  Identities=15%  Similarity=0.094  Sum_probs=3.6

Q ss_pred             HHHHhHHHHHHHHHHHHhhhhh-cchhHHHHHHH--HHHHHHHHHHHh----------hhHHHHHHHHHHHHHhhhcccc
Q psy6455          68 LNAAPMLGMVFGSYFWGCLADT-QGRKITLIGAL--LVDGLCGIASSV----------AQYYGVFLALRFINGFAVTGTL  134 (249)
Q Consensus        68 ~~~~~~i~~~i~~~~~g~l~dr-~Grr~~~~~~~--~~~~i~~~~~~~----------~~~~~~l~~~~~l~G~~~g~~~  134 (249)
                      ....++++-.+|..+.++.-=+ ..+|++++.+.  +++....+++..          .++-+..++..++.|+..|-..
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~  266 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS  266 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence            4567888888888877764211 13444444321  222222222311          2244566777889999999988


Q ss_pred             cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6455         135 GICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAW  173 (249)
Q Consensus       135 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~  173 (249)
                      +....+..+..++++|..+..+......+|..+|..++-
T Consensus       267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~  305 (309)
T PF01733_consen  267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF  305 (309)
T ss_dssp             HHHH-----------------------------------
T ss_pred             hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988888888777888777776653

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=84.03  E-value=20  Score=28.55  Aligned_cols=101  Identities=18%  Similarity=0.258  Sum_probs=52.2

Q ss_pred             HHHhHHHHHHHHHHHHhhhhh-cchhHHHH----HHHHHHHHHHHHHHh-h----hHHHHHHHHHHHHHhhhcccccccc
Q psy6455          69 NAAPMLGMVFGSYFWGCLADT-QGRKITLI----GALLVDGLCGIASSV-A----QYYGVFLALRFINGFAVTGTLGICF  138 (249)
Q Consensus        69 ~~~~~i~~~i~~~~~g~l~dr-~Grr~~~~----~~~~~~~i~~~~~~~-~----~~~~~l~~~~~l~G~~~g~~~~~~~  138 (249)
                      .-.+..|..+|....|.++.. +.||+.+.    .+.++.++..+.... .    .+...+.+.-++.|++.=+.+++..
T Consensus       147 ~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ViL  226 (267)
T PF07672_consen  147 QILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGVIL  226 (267)
T ss_pred             HHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            334445555666666666653 34554333    222333332222111 1    1356677888899988777787776


Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHH
Q psy6455         139 PYLGEFQPTAYREKVLCWLEMFWTGGIIVLPA  170 (249)
Q Consensus       139 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  170 (249)
                      ..-.|.= ...+-+..-.++..+++|.+.-.+
T Consensus       227 ~lPhEyK-~~~pk~ig~~Fg~iWGfGY~~yTi  257 (267)
T PF07672_consen  227 NLPHEYK-GYNPKKIGIQFGLIWGFGYIFYTI  257 (267)
T ss_pred             cChhhhc-CCCcceehhHHHHHHHHHHHHHHH
Confidence            5655552 222222222356666666655433

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=81.77  E-value=36  Score=29.93  Aligned_cols=75  Identities=9%  Similarity=0.075  Sum_probs=49.0

Q ss_pred             HHHHHhhhcccccccccccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHH
Q psy6455         123 RFINGFAVTGTLGICFPYLGEFQPTA-YREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSV  201 (249)
Q Consensus       123 ~~l~G~~~g~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~  201 (249)
                      -+..|++........-..+.+.+|.+ .+...+|-++...++-..+-.++++.+.           ...||+....+.-+
T Consensus       289 vi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~ii-----------r~~GW~~~AlitPi  357 (491)
T PF03219_consen  289 VIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNII-----------RRFGWRTAALITPI  357 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhhHHHHHHHhHH
Confidence            34556666666777777777777664 4566677666665655555557777776           45699988777655


Q ss_pred             HHHHHHH
Q psy6455         202 PSILLAL  208 (249)
Q Consensus       202 ~~~~~~~  208 (249)
                      +.++..+
T Consensus       358 v~lit~~  364 (491)
T PF03219_consen  358 VILITGL  364 (491)
T ss_pred             HHHHHHH
Confidence            5554443

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3810|consensus

Probab=80.22  E-value=16  Score=30.59  Aligned_cols=94  Identities=15%  Similarity=-0.089  Sum_probs=69.6

Q ss_pred             hhHHHHhHHHHHHHHHHHHhhhhhcchhH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccccccccc
Q psy6455          66 GWLNAAPMLGMVFGSYFWGCLADTQGRKI--TLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGE  143 (249)
Q Consensus        66 ~~~~~~~~i~~~i~~~~~g~l~dr~Grr~--~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~  143 (249)
                      |.+-....+..+++.+..|++.-++.|..  .+.++.+..+-..+++.-++++|...++.++.+.......++...-+++
T Consensus       274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~  353 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR  353 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence            45555666778899999999988888764  4444555555556677778889999999888887777777777777888


Q ss_pred             ccccchhHHHHHHHHH
Q psy6455         144 FQPTAYREKVLCWLEM  159 (249)
Q Consensus       144 ~~~~~~r~~~~~~~~~  159 (249)
                      ..+.+.-|...|+.+.
T Consensus       354 nL~~e~~gLvFGiNTF  369 (433)
T KOG3810|consen  354 NLSSELFGLVFGINTF  369 (433)
T ss_pred             hhhhhhheeeeehHHH
Confidence            8777777776666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	249
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		2e-06

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 107/249 (42%), Gaps = 34/249 (13%)
Query: 28  ILVIFGGLLYAY--AAISITVLS----FVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSY 81
           ++   GGLL+ Y  A IS TV S    FV P    +    +S  G+  A+ ++G + G  
Sbjct: 15  LVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSE-SAANSLLGFCVASALIGCIIGGA 73
Query: 82  FWGCLADTQGRKITLIGALLVDGLCGIASS------------------VAQYYGVFLALR 123
             G  ++  GR+ +L  A ++  + G+ S+                  +A Y   F+  R
Sbjct: 74  LGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR 133
Query: 124 FINGFAVTGTLGICFP-YLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRI 182
            I G  V G   +  P Y+ E  P   R K++ + +     G +++  V + +       
Sbjct: 134 IIGGIGV-GLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSG--- 189
Query: 183 ETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQM----FS 238
           +  +     W        +P++L  + L   PESP++L   G+ +QA  ILR++     +
Sbjct: 190 DASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLA 249
Query: 239 ANTGKEIEH 247
               +EI+H
Sbjct: 250 TQAVQEIKH 258

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	249
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	8e-06
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-04

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 45.3 bits (108), Expect = 8e-06
 Identities = 17/101 (16%), Positives = 38/101 (37%)

Query: 29  LVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD 88
           L++   LL A   ++ T+    +     D  +       +  A +L       F+G ++D
Sbjct: 1   LLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISD 60

Query: 89  TQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFA 129
             GR+  ++  + +  L  + +       V +A   + G  
Sbjct: 61  RVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMG 101

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 5/112 (4%)

Query: 22  YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSY 81
           Y +  + + +     YA   +     +  +P    + G +  D G+  +   +   F  +
Sbjct: 22  YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKF 80

Query: 82  FWGCLADTQGRKITLIGALLVDGLC----GIASSVAQYYGVFLALRFINGFA 129
             G ++D    ++ L   L++        G          V   L F+ G+ 
Sbjct: 81  IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWF 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	249
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.95
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.94
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.92
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.9
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.87
2xut_A	524	Proton/peptide symporter family protein; transport	99.83
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.73
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.68
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.63
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.56
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.56
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.56
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.4
2xut_A	524	Proton/peptide symporter family protein; transport	99.07

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.95  E-value=1.2e-26  Score=197.99  Aligned_cols=210  Identities=22%  Similarity=0.353  Sum_probs=175.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCC--------CCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHH
Q psy6455          24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGM--------TSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKIT   95 (249)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~   95 (249)
                      ++.+.+.+++.++.+..+++..+++..+|.+.++++.        +....+++.+.+.+|..+|++++|+++||+|||++
T Consensus         8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~   87 (491)
T 4gc0_A            8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            4445555666777788889999999888888776643        23456899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH------------------hhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHH
Q psy6455          96 LIGALLVDGLCGIASS------------------VAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWL  157 (249)
Q Consensus        96 ~~~~~~~~~i~~~~~~------------------~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~  157 (249)
                      ++++.++..++.++++                  ++++++.++++|+++|++.|+..+....+++|+.|+++|++..++.
T Consensus        88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~  167 (491)
T 4gc0_A           88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN  167 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence            9999999999999887                  4789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhcccCChhHHHhhCChHHHHHHHHHH
Q psy6455         158 EMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTRFPESPKFLFECGEYDQALDILRQM  236 (249)
Q Consensus       158 ~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (249)
                      +.+..+|..+++.++..+......   .......||..+.+..+..++..+..++.||+|++...+++.+++++.+++.
T Consensus       168 ~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~  243 (491)
T 4gc0_A          168 QFAIIFGQLLVYCVNYFIARSGDA---SWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKI  243 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCT---TTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhcchhhcccccc---ccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHh
Confidence            999999999999988777543211   1112357899998888888888888888999999998888777766555544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.94  E-value=6.7e-26  Score=190.65  Aligned_cols=194  Identities=19%  Similarity=0.146  Sum_probs=161.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH
Q psy6455          25 FHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDG  104 (249)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~  104 (249)
                      +++..+..+.+..+..++.....++.+|.+.+++|++..+.+++.+.+.++..++++++|+++||+|||++++++.++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~  102 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA  102 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence            34455666667777788888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH---HhhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-cccc
Q psy6455         105 LCGIAS---SVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLI-PLNL  180 (249)
Q Consensus       105 i~~~~~---~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~-~~~~  180 (249)
                      ++.+++   .++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+. +...
T Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  182 (438)
T 3o7q_A          103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP  182 (438)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999988   788999999999999999999999999999999999999999999999999999999999999987 3321


Q ss_pred             ccc--------Cc------ccccchhHHHHHHHHHHHHHHHHHhhc--ccCChh
Q psy6455         181 RIE--------TP------YFLYSSWNLFVTLVSVPSILLALWLTR--FPESPK  218 (249)
Q Consensus       181 ~~~--------~~------~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~  218 (249)
                      ...        ..      .....+||+.|++.+++.++..+..++  .||+++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~  236 (438)
T 3o7q_A          183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS  236 (438)
T ss_dssp             CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred             cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence            000        00      000012999998887777666655444  355543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.92  E-value=1.9e-25  Score=188.44  Aligned_cols=184  Identities=14%  Similarity=0.198  Sum_probs=164.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q psy6455          24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD  103 (249)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~  103 (249)
                      +.+++.+....+..+...+......+.+|.+.+++ .+..+.+++.+.+.++..++++++|+++||+|||++++++.++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~  102 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence            44566677777778888888888889999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh----hhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy6455         104 GLCGIASSV----AQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLN  179 (249)
Q Consensus       104 ~i~~~~~~~----~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  179 (249)
                      +++.+++++    +++++.++++|++.|++.+...+...+++.|++|+++|++++++.+....+|.+++|.+++++.   
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~---  179 (451)
T 1pw4_A          103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM---  179 (451)
T ss_dssp             HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH---
T ss_pred             HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            999999999    8999999999999999999999999999999999999999999999999999999999999876   


Q ss_pred             ccccCcccccch-hHHHHHHHHHHHHHHHHH-hhcccCChhH
Q psy6455         180 LRIETPYFLYSS-WNLFVTLVSVPSILLALW-LTRFPESPKF  219 (249)
Q Consensus       180 ~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~~-~~~~~~~~~~  219 (249)
                              +..+ ||+.|++.+++.++..++ .+++||+++.
T Consensus       180 --------~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~  213 (451)
T 1pw4_A          180 --------AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQS  213 (451)
T ss_dssp             --------HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred             --------HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhh
Confidence                    3356 999999998888776655 4557776653

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.90  E-value=7.1e-24  Score=175.05  Aligned_cols=177  Identities=14%  Similarity=0.130  Sum_probs=159.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHH
Q psy6455          32 FGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASS  111 (249)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~  111 (249)
                      ...+..+...+......+.+|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||++++.+.++..++.++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~   83 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV   83 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence            34455666677788888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccch
Q psy6455         112 VAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSS  191 (249)
Q Consensus       112 ~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~  191 (249)
                      ++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++++.           +..+
T Consensus        84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-----------~~~~  152 (375)
T 2gfp_A           84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD-----------TMWN  152 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS-----------CHHH
T ss_pred             HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----------Hhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999986           4468


Q ss_pred             hHHHHHHHHHHHHHHHHH-hhcccCChhH
Q psy6455         192 WNLFVTLVSVPSILLALW-LTRFPESPKF  219 (249)
Q Consensus       192 w~~~~~~~~~~~~~~~~~-~~~~~~~~~~  219 (249)
                      ||+.|++.++..++..+. .+++||+++.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T 2gfp_A          153 WRACYLFLLVLCAGVTFSMARWMPETRPV  181 (375)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence            999999998888777774 4556776543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.87  E-value=9e-22  Score=167.98  Aligned_cols=143  Identities=10%  Similarity=-0.001  Sum_probs=132.3

Q ss_pred             cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccc
Q psy6455          58 FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT-QGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGI  136 (249)
Q Consensus        58 ~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~  136 (249)
                      +|.+..+.+++.+.+.++..++++++|+++|| +|||++++++.++.+++.+++.++++++.++++|++.|++.+...+.
T Consensus        49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  128 (491)
T 4aps_A           49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN  128 (491)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence            99999999999999999999999999999999 89999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccch--hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhh
Q psy6455         137 CFPYLGEFQPTAY--REKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLT  211 (249)
Q Consensus       137 ~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  211 (249)
                      ..++++|++|+++  |+.+.++++....+|..++|.+++.+.           +..+||+.|++.++..++..+..+
T Consensus       129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-----------~~~g~~~~f~~~~~~~~~~~~~~~  194 (491)
T 4aps_A          129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ-----------EAAGYHVAFSLAAIGMFIGLLVYY  194 (491)
T ss_dssp             HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH-----------hhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988  778888899999999999999999997           446899999998877776666544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.83  E-value=2.6e-20  Score=160.27  Aligned_cols=163  Identities=11%  Similarity=0.043  Sum_probs=139.6

Q ss_pred             HHHHHHHHHHhhccc-cccccC------CCCcchhhHHHHhHHHHHHHHHHHHhhhhhc-chhHHHHHHHHHHHHHHHHH
Q psy6455          39 YAAISITVLSFVLPS-AQCDFG------MTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ-GRKITLIGALLVDGLCGIAS  110 (249)
Q Consensus        39 ~~~~~~~~~~~~~~~-~~~~~~------~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~  110 (249)
                      +..+..+.....++. +.+++|      .+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++.+++.+++
T Consensus        23 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~  102 (524)
T 2xut_A           23 CERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFL  102 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            333344444444443 566788      9999999999999999999999999999999 99999999999999999999


Q ss_pred             Hhhh-HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHH---HHHHHHHHHHHHHHHHHHHhcccccccCcc
Q psy6455         111 SVAQ-YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCW---LEMFWTGGIIVLPAVAWLLIPLNLRIETPY  186 (249)
Q Consensus       111 ~~~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~  186 (249)
                      .+++ +++.+++.|++.|++.+...+...+++.|++|+++|+++.+.   ++....+|..++|.+++.+.          
T Consensus       103 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~----------  172 (524)
T 2xut_A          103 AIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL----------  172 (524)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH----------
T ss_pred             HHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence            9998 999999999999999999999999999999999999876666   88889999999999998886          


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhhc
Q psy6455         187 FLYSSWNLFVTLVSVPSILLALWLTR  212 (249)
Q Consensus       187 ~~~~~w~~~~~~~~~~~~~~~~~~~~  212 (249)
                       +..+|++.|++.+++.++..+..++
T Consensus       173 -~~~g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          173 -KNFGAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             -HTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             -ccccHHHHHHHHHHHHHHHHHHHHH
Confidence             3458999999988887776665443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.73  E-value=1.5e-16  Score=133.86  Aligned_cols=170  Identities=12%  Similarity=0.063  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHHHHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhc--chhHHHHHHHHHHH-HHHH
Q psy6455          33 GGLLYAYAAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ--GRKITLIGALLVDG-LCGI  108 (249)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~--Grr~~~~~~~~~~~-i~~~  108 (249)
                      ..+..++..........+.|.+.++ +|.+..+.+++.+...++..++.++.|+++||+  |||+.+.++.++.. ++.+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  336 (451)
T 1pw4_A          257 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI  336 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            3334444444555566667776665 899999999999999999999999999999999  99999888877766 6666


Q ss_pred             HHHhh--hHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccccCc
Q psy6455         109 ASSVA--QYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTG-GIIVLPAVAWLLIPLNLRIETP  185 (249)
Q Consensus       109 ~~~~~--~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l~~~~~~~~~~  185 (249)
                      +..+.  .+.+.+.+..++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.         
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~---------  407 (451)
T 1pw4_A          337 VYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV---------  407 (451)
T ss_dssp             HTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred             HHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            65555  36777778888999988888888889999999999999999999999999 9999999999997         


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhhcc
Q psy6455         186 YFLYSSWNLFVTLVSVPSILLALWLTRF  213 (249)
Q Consensus       186 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~  213 (249)
                        +..+|+..|++.+++.++..++.++.
T Consensus       408 --~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          408 --DFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             --HSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence              44578999998888888777765544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.68  E-value=2.4e-16  Score=132.02  Aligned_cols=145  Identities=15%  Similarity=0.086  Sum_probs=119.1

Q ss_pred             CcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccccccc
Q psy6455          62 SSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYL  141 (249)
Q Consensus        62 ~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~  141 (249)
                      ....++..+...++..++.++.|+++||+|||+++..+.++.+++.+...+.++.+.+++..++.+++.+...+....++
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  337 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI  337 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567778888888899999999999999999999998888888777777777777777777788887666667778899


Q ss_pred             ccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHHHHHHHHHhhc-ccCCh
Q psy6455         142 GEFQPTAYREKVLCW-LEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLALWLTR-FPESP  217 (249)
Q Consensus       142 ~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~  217 (249)
                      +|.+|++.|+++.++ ++....+|..++|.+++++.           +..+++..|.+.+++.++..+..++ .||++
T Consensus       338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~-----------~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY-----------ESIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH-----------HHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH-----------HhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            999999999999998 58888899999999999887           3357888888888888877766444 45543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.63  E-value=2.1e-15  Score=126.54  Aligned_cols=154  Identities=10%  Similarity=-0.065  Sum_probs=122.0

Q ss_pred             HHHHHhhcccc-ccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy6455          44 ITVLSFVLPSA-QCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLA  121 (249)
Q Consensus        44 ~~~~~~~~~~~-~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~  121 (249)
                      ........|.+ .++ +|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++.+++.++..+.++.+.+..
T Consensus       274 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (438)
T 3o7q_A          274 QTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA  353 (438)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            33444445555 544 6999999999999999999999999999999999999999999999988888888777665444


Q ss_pred             HHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccch-hHHHHHHHH
Q psy6455         122 LRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSS-WNLFVTLVS  200 (249)
Q Consensus       122 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~-w~~~~~~~~  200 (249)
                       .++.|++.+...+...++..|.+|++ ++.+.++.. ...+|..++|.+.+++.+           ..+ ++..|++.+
T Consensus       354 -~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~-----------~~g~~~~~~~~~~  419 (438)
T 3o7q_A          354 -LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD-----------AAGNIPTAELIPA  419 (438)
T ss_dssp             -HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH-----------HHTSSGGGGHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH-----------HhcchHHHHHHHH
Confidence             47888988988999999999999866 888888766 556999999999999973           345 777777765


Q ss_pred             HHHHHHHHHhh
Q psy6455         201 VPSILLALWLT  211 (249)
Q Consensus       201 ~~~~~~~~~~~  211 (249)
                      +..++..+..+
T Consensus       420 ~~~~~~~~~~~  430 (438)
T 3o7q_A          420 LCFAVIFIFAR  430 (438)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            55555444433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.56  E-value=5.9e-15  Score=125.67  Aligned_cols=171  Identities=16%  Similarity=0.051  Sum_probs=120.1

Q ss_pred             HHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhh-----HH
Q psy6455          42 ISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQ-----YY  116 (249)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-----~~  116 (249)
                      .....+..+.+.+.++.+.+............+...++.++.+++.||+|||+.++.+.....++.+......     +.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~  370 (491)
T 4gc0_A          291 VGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI  370 (491)
T ss_dssp             TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             hhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchH
Confidence            3344455566777777887777777788888889999999999999999999999999888887776654321     22


Q ss_pred             HHHH-HHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHH
Q psy6455         117 GVFL-ALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLF  195 (249)
Q Consensus       117 ~~l~-~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~  195 (249)
                      ..+. ...+..+++. ...+..+.+.+|.+|++.|++++++.+....++..+++.+.+.+.+....     ....++...
T Consensus       371 ~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~-----~~~~~~~~~  444 (491)
T 4gc0_A          371 VALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL-----VAHFHNGFS  444 (491)
T ss_dssp             HHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH-----HHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhhhhHH
Confidence            2222 2222223332 33466778999999999999999999999899999988877666421100     011244556


Q ss_pred             HHHHHHHHHHHHHH-hhcccCChh
Q psy6455         196 VTLVSVPSILLALW-LTRFPESPK  218 (249)
Q Consensus       196 ~~~~~~~~~~~~~~-~~~~~~~~~  218 (249)
                      |++.++++++..+. ++++||++.
T Consensus       445 ~~i~~~~~~~~~i~~~~~~PETkg  468 (491)
T 4gc0_A          445 YWIYGCMGVLAALFMWKFVPETKG  468 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred             HHHHHHHHHHHHHHHHheecCCCC
Confidence            77777777777665 566899854

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.56  E-value=2.8e-16  Score=131.57  Aligned_cols=160  Identities=15%  Similarity=0.035  Sum_probs=108.8

Q ss_pred             HHHHHHhhcccc-ccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH---HHhhhHHH-
Q psy6455          43 SITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA---SSVAQYYG-  117 (249)
Q Consensus        43 ~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~---~~~~~~~~-  117 (249)
                      ......+++|.+ .+++|.+..+.+++.+.+.++..++++++|+++||+|||++++++.++..+....   ..+.+... 
T Consensus        22 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~  101 (417)
T 2cfq_A           22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY  101 (417)
T ss_dssp             HHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445566664 4569999999999999999999999999999999999999999888776543211   12222211 


Q ss_pred             HHHHHHHHHHhhhccccccccccccccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHH
Q psy6455         118 VFLALRFINGFAVTGTLGICFPYLGEFQPT--AYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLF  195 (249)
Q Consensus       118 ~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~  195 (249)
                      .+...+++.|++.+...+.....+.++.++  ++|+...+.......+|..++|.+++++.           + .+|++.
T Consensus       102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~-----------~-~~~~~~  169 (417)
T 2cfq_A          102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF-----------T-INNQFV  169 (417)
T ss_dssp             TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHH-----------H-HCSHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH-----------H-hchhHH
Confidence            133455555555554444444444455443  34566667777777889999999999885           2 468999


Q ss_pred             HHHHHHHHHHHHHHhhccc
Q psy6455         196 VTLVSVPSILLALWLTRFP  214 (249)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~  214 (249)
                      |++.++..++..+..++.+
T Consensus       170 f~~~~~~~~~~~~~~~~~~  188 (417)
T 2cfq_A          170 FWLGSGCALILAVLLFFAK  188 (417)
T ss_dssp             HTTTTTTTTTHHHHSCSSC
T ss_pred             HHHHHHHHHHHHHHHHHcC
Confidence            9887776555555444443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.56  E-value=8.9e-15  Score=124.63  Aligned_cols=157  Identities=11%  Similarity=0.073  Sum_probs=121.6

Q ss_pred             HHHHhhcccccc-ccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHH-----HHHHHHHHHHHHHHhhh----
Q psy6455          45 TVLSFVLPSAQC-DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLI-----GALLVDGLCGIASSVAQ----  114 (249)
Q Consensus        45 ~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~-----~~~~~~~i~~~~~~~~~----  114 (249)
                      ......+|.+.+ .++.+....+++.+...++..++.++.|++.||+|||+...     .+.++.+++.++..+..    
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (491)
T 4aps_A          300 EQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG  379 (491)
T ss_dssp             GGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCC
T ss_pred             hhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            333444444443 46777678899999999999999999999999999986554     77777777766665543    


Q ss_pred             -----HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccc
Q psy6455         115 -----YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLY  189 (249)
Q Consensus       115 -----~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~  189 (249)
                           +.+.+.+..++.|++.+...+....++.|.+|++.|+++.++.+....+|..+++.+.+.+.+            
T Consensus       380 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~------------  447 (491)
T 4aps_A          380 TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA------------  447 (491)
T ss_dssp             CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG------------
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------
Confidence                 566777888899999998899999999999999999999999999999999999999888742            


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhcc
Q psy6455         190 SSWNLFVTLVSVPSILLALWLTRF  213 (249)
Q Consensus       190 ~~w~~~~~~~~~~~~~~~~~~~~~  213 (249)
                      .++...|.+.+++.++..+..+++
T Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~  471 (491)
T 4aps_A          448 KSEVAYFSYFGLGSVVLGIVLVFL  471 (491)
T ss_dssp             SSTTHHHHHTHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567777777777666654443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.40  E-value=1.6e-13  Score=112.97  Aligned_cols=154  Identities=12%  Similarity=-0.008  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhccccccc-cCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHH-HHHHHH-
Q psy6455          32 FGGLLYAYAAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV-DGLCGI-  108 (249)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~-~~i~~~-  108 (249)
                      ...+..+.............|.+.++ +|.++.+.+++.+...++..++.++.+++.||+|++  +..+... ...+.. 
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~  280 (375)
T 2gfp_A          203 CYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLM  280 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence            33344444455566667778887666 899999999999999999999999999999999983  2333332 222222 


Q ss_pred             -HHHh--hhHHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCc
Q psy6455         109 -ASSV--AQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETP  185 (249)
Q Consensus       109 -~~~~--~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~  185 (249)
                       ....  .++.+.+.+..++.|++.+...+...+++.|..| ++|+++.++.+....+|..++|.+.+.+.         
T Consensus       281 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~---------  350 (375)
T 2gfp_A          281 WIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLP---------  350 (375)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHH---------
T ss_pred             HHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence             2222  2366777788889999999999999999999998 89999999999999999999999988886         


Q ss_pred             ccccchhHHHHHHH
Q psy6455         186 YFLYSSWNLFVTLV  199 (249)
Q Consensus       186 ~~~~~~w~~~~~~~  199 (249)
                        +..+|...+.+.
T Consensus       351 --~~~~~~~~~~~~  362 (375)
T 2gfp_A          351 --QTGQGSLGLLMT  362 (375)
T ss_dssp             --HHHHHHHHHHHH
T ss_pred             --cCCcccHHHHHH
Confidence              334676666654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.07  E-value=6.2e-11  Score=101.68  Aligned_cols=141  Identities=11%  Similarity=0.035  Sum_probs=101.5

Q ss_pred             chhhHHHHhHHHHHHHHHHHHhhh----hhcch----hHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHH
Q psy6455          64 DKGWLNAAPMLGMVFGSYFWGCLA----DTQGR----KITLIGALLVDGLCGIASSVA---------QYYGVFLALRFIN  126 (249)
Q Consensus        64 ~~~~~~~~~~i~~~i~~~~~g~l~----dr~Gr----r~~~~~~~~~~~i~~~~~~~~---------~~~~~l~~~~~l~  126 (249)
                      ..+++.....++..++.++.+++.    ||.|+    ++.+.++.++.+++.++..+.         .+.+.+++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            456677777777778888887765    55543    356677777777777766653         2566777888999


Q ss_pred             HhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccchh---------HHHHH
Q psy6455         127 GFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSW---------NLFVT  197 (249)
Q Consensus       127 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w---------~~~~~  197 (249)
                      |++.+...+...+++.|..|++.|++++++.+....+|..++|.+.+.+.+..         ..+|         +..|+
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~---------~~~~~~~~~~~~~~~~~~  486 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT---------VTEQIVQTGMSVTAFQMF  486 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCH---------HHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc---------cccccccccccccccHHH
Confidence            99999999999999999999999999999999999999999999999886321         0123         33366


Q ss_pred             HHHHHHHHHHHHhhcc
Q psy6455         198 LVSVPSILLALWLTRF  213 (249)
Q Consensus       198 ~~~~~~~~~~~~~~~~  213 (249)
                      +.+++.++..++.+++
T Consensus       487 ~~~~~~~~~~~~~~~~  502 (524)
T 2xut_A          487 FFAGFAILAAIVFALY  502 (524)
T ss_dssp             HHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666666666554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	249
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	4e-11
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	5e-05

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 60.1 bits (144), Expect = 4e-11
 Identities = 25/197 (12%), Positives = 59/197 (29%), Gaps = 5/197 (2%)

Query: 22  YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSY 81
           Y +  + + +     YA   +     +  +P    + G +  D G+  +   +   F  +
Sbjct: 19  YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKF 77

Query: 82  FWGCLADTQGRKITLIGALLVDGL----CGIASSVAQYYGVFLALRFINGFAVTGTLGIC 137
             G ++D    ++ L   L++        G          V   L F+ G+        C
Sbjct: 78  IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 137

Query: 138 FPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVT 197
              +  +     R  ++         G  + P +  L +          ++ +   + V 
Sbjct: 138 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA 197

Query: 198 LVSVPSILLALWLTRFP 214
           L +   +         P
Sbjct: 198 LFAFAMMRDTPQSCGLP 214

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (96), Expect = 5e-05
 Identities = 24/191 (12%), Positives = 47/191 (24%)

Query: 29  LVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD 88
             +FG   + Y  I      F          ++ SD G + AA  L  +     +G L+D
Sbjct: 9   FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD 68

Query: 89  TQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAVTGTLGICFPYLGEFQPTA 148
             G +  L+  +    +      +  +  +      +        LG CF          
Sbjct: 69  KLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAF 128

Query: 149 YREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVPSILLAL 208
             +        F    +      A     + +                 L+    +  A 
Sbjct: 129 IEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAK 188

Query: 209 WLTRFPESPKF 219
                  +   
Sbjct: 189 TDAPSSATVAN 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	249
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.93
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.75
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.65
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.6

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.2e-26  Score=193.05  Aligned_cols=186  Identities=15%  Similarity=0.225  Sum_probs=158.0

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q psy6455          22 YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALL  101 (249)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~  101 (249)
                      .++++|..+..++++++....+...++...|.+. |+|+|.++.|++.+.+.+++.++++++|+++||+|||++++++.+
T Consensus        19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   97 (447)
T d1pw4a_          19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI   97 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            3456777777777777777777777777788765 689999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh----HHHHHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6455         102 VDGLCGIASSVAQ----YYGVFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTGGIIVLPAVAWLLIP  177 (249)
Q Consensus       102 ~~~i~~~~~~~~~----~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~  177 (249)
                      +.+++.+++++++    +++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|..+++.+++.+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  177 (447)
T d1pw4a_          98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  177 (447)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence            9999988887654    567899999999999999999999999999999999999999999999999999998887753


Q ss_pred             ccccccCcccccchhHHHHHHHHHHHHHHHHHh-hcccCChh
Q psy6455         178 LNLRIETPYFLYSSWNLFVTLVSVPSILLALWL-TRFPESPK  218 (249)
Q Consensus       178 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~  218 (249)
                      ..          .+||+.+++.+++.++..+.. ++.+++|+
T Consensus       178 ~~----------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (447)
T d1pw4a_         178 WF----------NDWHAALYMPAFCAILVALFAFAMMRDTPQ  209 (447)
T ss_dssp             HT----------CCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             hh----------hcccccchhhhhhHHHHHHHHHHhcccchh
Confidence            32          589999888887777766654 44555443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=5.2e-18  Score=137.99  Aligned_cols=161  Identities=14%  Similarity=0.045  Sum_probs=136.6

Q ss_pred             HHHHHhhccccccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy6455          44 ITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALR  123 (249)
Q Consensus        44 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~  123 (249)
                      ............++.+.+....+.......++..++..+.+++.||+|+|+.+.++.++.+++.+...+.++.+.+++..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (417)
T d1pv7a_         240 DQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILK  319 (417)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred             hccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHH
Confidence            33334444445555666777788888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcccccccccccccccccchhHHHHHHH-HHHHHHHHHHHHHHHHHHhcccccccCcccccchhHHHHHHHHHH
Q psy6455         124 FINGFAVTGTLGICFPYLGEFQPTAYREKVLCWL-EMFWTGGIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFVTLVSVP  202 (249)
Q Consensus       124 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~  202 (249)
                      ++.|++.+...+...+++.|.+|++.|++..++. +....+|..++|.+.+++.           +..|++..|++.+++
T Consensus       320 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~-----------~~~g~~~~~~~~~~~  388 (417)
T d1pv7a_         320 TLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY-----------ESIGFQGAYLVLGLV  388 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH-----------HHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHCHHHHHHHHHHH
Confidence            9999999999999999999999999999999984 5677899999999999997           556899999998888


Q ss_pred             HHHHHHHhhc-ccC
Q psy6455         203 SILLALWLTR-FPE  215 (249)
Q Consensus       203 ~~~~~~~~~~-~~~  215 (249)
                      .++..++..+ +++
T Consensus       389 ~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         389 ALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHhhcC
Confidence            8777766444 443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=5.7e-17  Score=131.73  Aligned_cols=171  Identities=13%  Similarity=0.068  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHhhccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHhh
Q psy6455          35 LLYAYAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVA  113 (249)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~  113 (249)
                      +..+...+......+++|. +.+++|+|.++.|++.+.+.++..++++++|+++||+|||++++++..+..++..+..+.
T Consensus        14 ~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~   93 (417)
T d1pv7a_          14 LFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF   93 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence            3334444555566677776 456699999999999999999999999999999999999999999999998888887776


Q ss_pred             hHHHHHH----HHHHHHHhhhccccccccccccccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccc
Q psy6455         114 QYYGVFL----ALRFINGFAVTGTLGICFPYLGEFQPT--AYREKVLCWLEMFWTGGIIVLPAVAWLLIPLNLRIETPYF  187 (249)
Q Consensus       114 ~~~~~l~----~~~~l~G~~~g~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~  187 (249)
                      .+.....    +.+.+.+.+.+...........+..++  +++....+........+..+++.+++.+.+          
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------  163 (417)
T d1pv7a_          94 IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----------  163 (417)
T ss_dssp             THHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred             hhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc----------
Confidence            6554433    334444444343333333333333332  234455666777788888999999988852          


Q ss_pred             ccchhHHHHHHHHHHHHH-HHHHhhcccCCh
Q psy6455         188 LYSSWNLFVTLVSVPSIL-LALWLTRFPESP  217 (249)
Q Consensus       188 ~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~  217 (249)
                        .+|+..+........+ ..+..+..++++
T Consensus       164 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (417)
T d1pv7a_         164 --INNQFVFWLGSGCALILAVLLFFAKTDAP  192 (417)
T ss_dssp             --HCHHHHHHHHHHHHHHHHHHHHSSCCCSC
T ss_pred             --ccccccccchhhHHHHHHHHHHHHhcccc
Confidence              3444445444444444 444455555543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=6.4e-15  Score=121.46  Aligned_cols=159  Identities=14%  Similarity=0.058  Sum_probs=118.9

Q ss_pred             HHHHHhhccc-cccccCCCCcchhhHHHHhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH---HHHHH--hhhHHH
Q psy6455          44 ITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC---GIASS--VAQYYG  117 (249)
Q Consensus        44 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~i~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~---~~~~~--~~~~~~  117 (249)
                      ........|. +.+.++.+..+.++..+...++..++.++.|+++||++||+..........+.   .....  ...+.+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (447)
T d1pw4a_         265 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPT  344 (447)
T ss_dssp             HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHH
T ss_pred             hhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHH
Confidence            3334444444 45668899999999999999999999999999999999875443333322222   22211  234677


Q ss_pred             HHHHHHHHHHhhhcccccccccccccccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccccCcccccchhHHHH
Q psy6455         118 VFLALRFINGFAVTGTLGICFPYLGEFQPTAYREKVLCWLEMFWTG-GIIVLPAVAWLLIPLNLRIETPYFLYSSWNLFV  196 (249)
Q Consensus       118 ~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l~~~~~~~~~~~~~~~~w~~~~  196 (249)
                      ...+..++.|++.+...+....+..|.+|++.|+++.++.+....+ |.+++|.+.+++.           +..||+..+
T Consensus       345 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~-----------~~~g~~~~~  413 (447)
T d1pw4a_         345 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV-----------DFFGWDGGF  413 (447)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HSSCSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhChHHHH
Confidence            7778888889988888888899999999999999999998877665 5677899999887           446899888


Q ss_pred             HHHHHHHHHHHHHhhcc
Q psy6455         197 TLVSVPSILLALWLTRF  213 (249)
Q Consensus       197 ~~~~~~~~~~~~~~~~~  213 (249)
                      ++.++..++..++...+
T Consensus       414 ~~~~~~~~~~~~~~~~~  430 (447)
T d1pw4a_         414 MVMIGGSILAVILLIVV  430 (447)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88877777776664443