Psyllid ID: psy6546

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
DHFLLSPTTNNPSTTNTTPTPTTQTSSTTPTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVLHDVRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKVGATL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccHHHHHHccccccccccccccccccccHHHHHHHHccccccccccccccccccccHHHHHHccccccccccccccccccccHHHHHHHcccccccccccccccccccccHHHHHHcccccccccccccccccccccHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEcccccHHHHccccccccccccccccccEccccHHHEHcHHcccccEEcccccccEcccccHHHHccccHHHHHHHHcccccccccccccccEccccHHHHHHHHccccccccccccccEccccHHHHHHHHccccEEEcccccccEccccHHHEHHHHccccEEEcccccccEccccHHHEHHHHcccccEEcccccccEccccHHHHHHHHccccEEEcccccccEccccHHHHHHHHccccccccccccccEccccHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
dhfllspttnnpsttnttptpttqtssttptrhpcpqcsrdFATVKILKTHLKthegiiypcpecdktflstltgtpqgargRAVYLSRmsttltrhpcpqcsrdFATVKILKTHLKthegiiypcpecdktflstsglrehrKVHAGVRYIchacprefsseATMKAHVashngvqhacdqcdrtfscmpylrqhqklhsgityscpscsksfnrkdRYRMHLKLHQGVRHTCKECSKEfsneynlknhmvLHDVRAYVCELCArqftrvdhfnhhrrlqhdpeeFEKVGATL
Flexible Loop (DISEMBL)
dhfllspttnnpsttnttptpttqtssttptrhpcpqCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTLtgtpqgarGRAVYLSRMSTtltrhpcpqcsRDFATVKILKTHLKThegiiypcpecDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLhsgityscpscsKSFNRKDRYRMHLKLhqgvrhtcKECSKEFSNEYNLKNHMVLHDVRAYVCELCARQFTRVDHFNhhrrlqhdpeefekvgatl
Low Complexity Region (SEG)
DHFLLspttnnpsttnttptpttqtssttptRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVLHDVRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKVGATL
Disordered region (IsUnstruct)
*************************************CSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVLHDVRAYVCELCARQFTRVDHFNHH*****************
Disordered Region (DISOPRED)
DHFLLSPTTNNPSTTNTTPTPTTQTSSTTPTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTLT******RGRAVYLSRMSTTLTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVLHDVRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKVGATL
Disordered Region (DISEMBL)
**********************************CPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVLHDVRAYVCELCARQFTRVDHFNHHRRLQHDPE*********
Disordered Region (DISPRO)
***LLSPTTNNPSTTNTTPTPTTQTSSTTPTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVLHDVRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKVGATL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DHFLLSPTTNNPSTTNTTPTPTTQTSSTTPTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVLHDVRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKVGATL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q8N895	744	Zinc finger protein 366 O	yes	N/A	0.850	0.336	0.347	2e-29
Q8K2R5	619	Zinc finger protein 668 O	no	N/A	0.840	0.399	0.307	3e-29
Q6ZMW2	699	Zinc finger protein 782 O	no	N/A	0.840	0.353	0.319	3e-29
Q5TYW1	1059	Zinc finger protein 658 O	no	N/A	0.850	0.236	0.310	1e-28
O75123	536	Zinc finger protein 623 O	no	N/A	0.833	0.457	0.295	1e-28
Q571J5	560	Zinc finger protein 354C	no	N/A	0.812	0.426	0.321	2e-28
Q5R9F0	642	Zinc finger protein 14 OS	no	N/A	0.840	0.384	0.318	3e-28
Q5R5U3	672	Zinc finger protein 271 O	no	N/A	0.806	0.352	0.330	3e-28
Q4R3I5	619	Zinc finger protein 668 O	N/A	N/A	0.836	0.397	0.301	3e-28
Q14591	655	Zinc finger protein 271 O	no	N/A	0.806	0.361	0.330	4e-28

>sp|Q8N895|ZN366_HUMAN Zinc finger protein 366 OS=Homo sapiens GN=ZNF366 PE=1 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/276 (34%), Positives = 131/276 (47%), Gaps = 26/276 (9%)

Query: 33  HPCPQCSRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTL----------TGTPQGAR 81
           H C  C + F  +  L TH+ TH+G   + C  C K F  T              P   R
Sbjct: 281 HACTHCGKLFKQLSHLHTHMLTHQGTRPHKCQVCHKAFTQTSHLKRHMMQHSEVKPHNCR 340

Query: 82  --GRA-VYLSRMSTTLTRHP------CPQCSRDFATVKILKTHLKTHEG-IIYPCPECDK 131
             GR   Y S +     +H       C +C  DF T+  LK HL TH G I Y C ECDK
Sbjct: 341 VCGRGFAYPSELKAHEAKHASGRENICVECGLDFPTLAQLKRHLTTHRGPIQYNCSECDK 400

Query: 132 TFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGV-QHACDQCDRTFSC 189
           TF   S L+ H   H  +R YIC  C  EF     +K H  +H GV +H C  C R F+ 
Sbjct: 401 TFQYPSQLQNHMMKHKDIRPYICSECGMEFVQPHHLKQHSLTHKGVKEHKCGICGREFTL 460

Query: 190 MPYLRQHQKLHSGI-TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNL 247
           +  +++H  +H+ I  Y C  C KSF +K   + H+ +H  V+   CK C KEF+  +NL
Sbjct: 461 LANMKRHVLIHTNIRAYQCHLCYKSFVQKQTLKAHMIVHSDVKPFKCKLCGKEFNRMHNL 520

Query: 248 KNHMVLH-DVRAYVCELCARQFTRVDHFNHHRRLQH 282
             HM LH D + + C  C  +FT   +   H +++H
Sbjct: 521 MGHMHLHSDSKPFKCLYCPSKFTLKGNLTRHMKVKH 556

Has transcriptional repression activity. Acts as corepressor of ESR1; the function seems to involve CTBP1 and histone deacetylases.
Homo sapiens (taxid: 9606)

>sp|Q8K2R5|ZN668_MOUSE Zinc finger protein 668 OS=Mus musculus GN=Znf668 PE=2 SV=1

 Score =  129 bits (324), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 130/263 (49%), Gaps = 16/263 (6%)

Query: 25  TSSTTPTRHPCPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTLTGTPQGARGR 83
            S   P  + CP C + + T   L++H ++H G   +PCPEC + F+  +          
Sbjct: 76  ASVAKPRPYACPLCPKAYKTAPELRSHGRSHTGEKPFPCPECGRRFMQPVC--------L 127

Query: 84  AVYLSRMSTTLTRHPCPQCSRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTSGLREH 142
            V+L+  +  L    C  C + + T+  LK H + H G   Y CP+C K+F   S  R+H
Sbjct: 128 RVHLASHAGELPFR-CTHCPKAYGTLSKLKIHQRGHTGERPYACPDCGKSFADPSVFRKH 186

Query: 143 RKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLH 200
           R+ HAG+R Y C  C + ++    ++ H  SH G +   C +C ++FS    L  HQ++H
Sbjct: 187 RRTHAGLRPYSCERCGKAYAELKDLRNHERSHTGERPFLCSECGKSFSRSSSLTCHQRIH 246

Query: 201 SGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VR 257
           +    Y CP+C K F +   Y+ H + H G +   C  C + FS+  + + H   H+ V+
Sbjct: 247 AAQKPYRCPACGKGFTQLSSYQSHERTHSGEKPFLCPRCGRMFSDPSSFRRHQRAHEGVK 306

Query: 258 AYVCELCARQFTRVDHFNHHRRL 280
            Y CE C + F +      HRR+
Sbjct: 307 PYRCEKCGKDFRQPADLAMHRRV 329

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|Q6ZMW2|ZN782_HUMAN Zinc finger protein 782 OS=Homo sapiens GN=ZNF782 PE=2 SV=1

 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/263 (31%), Positives = 125/263 (47%), Gaps = 16/263 (6%)

Query: 24  QTSSTTPTRHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTLTGTPQGARG 82
           Q S T    + CP+C + F+    L+ H +TH G   Y C  CDK F          A+ 
Sbjct: 385 QKSHTGEKPYECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAF---------SAKS 435

Query: 83  RAVYLSRMSTTLTRHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLRE 141
                 R  T      C +C + F    IL  H +TH G   + C EC K+F   SGLR 
Sbjct: 436 GLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRN 495

Query: 142 HRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKL 199
           HR+ H G R Y C  C + F  ++ ++ H  +H G + + C+QC + F     LR H ++
Sbjct: 496 HRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRI 555

Query: 200 HSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DV 256
           H+G   Y C  C ++F++K   R+H + H G + + C+EC K F  + NL+ H   H   
Sbjct: 556 HTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGE 615

Query: 257 RAYVCELCARQFTRVDHFNHHRR 279
           + Y C  C + F+       H+R
Sbjct: 616 KPYECNECGKAFSEKSVLRKHQR 638

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q5TYW1|ZN658_HUMAN Zinc finger protein 658 OS=Homo sapiens GN=ZNF658 PE=2 SV=2

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 132/274 (48%), Gaps = 24/274 (8%)

Query: 33  HPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTLTGTPQGARGRAVYLS--- 88
           + C +C + F+    L+ H + H G   Y C EC+KTF                +LS   
Sbjct: 518 YECIECGKTFSKTSHLRAHQRIHTGEKPYECVECEKTF------------SHKTHLSVHQ 565

Query: 89  RMSTTLTRHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHA 147
           R+ T    + C  C + F     L+ H + H G   Y C +C+KTF   S LR H ++H 
Sbjct: 566 RVHTGEKPYECNDCGKSFTYNSALRAHQRIHTGEKPYECSDCEKTFAHNSALRAHHRIHT 625

Query: 148 GVR-YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGIT- 204
           G + Y C+ C R F+  + +KAH   H G + + C++C R+F+    LR HQ++H+G   
Sbjct: 626 GEKPYECNECGRSFAHISVLKAHQRIHTGEKPYECNECGRSFTYNSALRAHQRIHTGRKP 685

Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCE 262
           Y C  C K+F      ++H ++H G + + C EC K F++   L+ H  +H   + Y C 
Sbjct: 686 YECSDCEKTFAHNSALKIHQRIHTGEKPYECNECEKTFAHNSALRAHQNIHTGEKLYECS 745

Query: 263 LCARQFTRVDHFNHHRRLQ--HDPEEFEKVGATL 294
            C + F +    + HRR+     P E  K G T 
Sbjct: 746 ECGKTFFQKTRLSTHRRIHTGEKPYECSKCGKTF 779

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|O75123|ZN623_HUMAN Zinc finger protein 623 OS=Homo sapiens GN=ZNF623 PE=2 SV=2

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 130/261 (49%), Gaps = 16/261 (6%)

Query: 35  CPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTT 93
           C +C + F+   +L  H + H G   Y C EC K+F+ + +          +   ++ T 
Sbjct: 237 CKECGKGFSQSSLLIRHQRIHTGERPYECNECGKSFIRSSS---------LIRHYQIHTE 287

Query: 94  LTRHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVR-Y 151
           + ++ C +C + F     L  H + H G   + C EC K F+ +S L +H+++H G R Y
Sbjct: 288 VKQYECKECGKAFRHRSDLIEHQRIHTGERPFECNECGKAFIRSSKLIQHQRIHTGERPY 347

Query: 152 ICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGI-TYSCPS 209
           +C+ C + FS  +    H   H G + + C++C + F    YL +HQK+H+G   Y C  
Sbjct: 348 VCNECGKRFSQTSNFTQHQRIHTGEKLYECNECGKAFFLSSYLIRHQKIHTGERVYECKE 407

Query: 210 CSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQ 267
           C K+F +K     H K+H G R   CK+C K F     L  H ++H   + YVC  C + 
Sbjct: 408 CGKAFLQKAHLTEHQKIHSGDRPFECKDCGKAFIQSSKLLLHQIIHTGEKPYVCSYCGKG 467

Query: 268 FTRVDHFNHHRRLQHDPEEFE 288
           F +  +F  H+++  + + +E
Sbjct: 468 FIQRSNFLQHQKIHTEEKLYE 488

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q571J5|Z354C_MOUSE Zinc finger protein 354C OS=Mus musculus GN=Znf354c PE=2 SV=2

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/255 (32%), Positives = 125/255 (49%), Gaps = 16/255 (6%)

Query: 33  HPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTLTGTPQGARGRAVYLSRMS 91
           + C +C + F+    L  H +TH G   Y C EC+K F S+ T          +   R+ 
Sbjct: 246 YKCSECGKSFSHRSSLLAHQRTHTGEKPYKCSECEKAFGSSST---------LIKHLRVH 296

Query: 92  TTLTRHPCPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR 150
           T    + C QC + F+    L  H + H G  +Y C ECDK F   + L  H+++H G +
Sbjct: 297 TGEKPYRCRQCGKAFSQCSTLTVHQRIHTGEKLYKCAECDKAFNCRAKLHRHQRIHTGEK 356

Query: 151 -YICHACPREFSSEATMKAHVASHNGVQH-ACDQCDRTFSCMPYLRQHQKLHSGIT-YSC 207
            Y C  C + +S   ++  H   H G Q   C QC RTF+ +  L +HQ++H+G   Y C
Sbjct: 357 PYKCAECGKGYSQFPSLAEHQRLHTGEQLCQCLQCGRTFTRVSTLIEHQRIHTGQKPYQC 416

Query: 208 PSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCELCA 265
             C K+FN+   +  H K+H G + +TC+EC K F  + NL  H  +H   + Y C  C 
Sbjct: 417 NECGKTFNQYSSFNEHRKIHTGEKLYTCEECGKAFGCKSNLYRHQRIHTGEKPYQCNQCG 476

Query: 266 RQFTRVDHFNHHRRL 280
           + F++      H R+
Sbjct: 477 KAFSQYSFLTEHERI 491

May function as a transcription repressor. Suppresses osteogenic effects of RUNX2. Binds to 5'-CCACA-3' core sequence. May be involved in osteoblastic differentiation.

Mus musculus (taxid: 10090)

>sp|Q5R9F0|ZNF14_PONAB Zinc finger protein 14 OS=Pongo abelii GN=ZNF14 PE=2 SV=1

 Score =  125 bits (315), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/273 (31%), Positives = 129/273 (47%), Gaps = 26/273 (9%)

Query: 33  HPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTLTG-----TPQGAR----- 81
           + C +C + F+ +   + H +TH G   Y C EC K F  + +      T  GAR     
Sbjct: 279 YKCKECGKAFSFLSSFRRHKRTHSGEKPYECKECGKAFFYSASFRAHVITHTGARPYKCK 338

Query: 82  --GRAVYLSRMSTTLTR-------HPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDK 131
             G+A   S       R       + C QC + F+    L+ H +TH G   Y C +C K
Sbjct: 339 ECGKAFNSSNSCRVHERTHIGEKPYECKQCGKSFSWSISLRLHERTHTGEKPYECKQCHK 398

Query: 132 TFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSC 189
           TF  +S LREH   H G + Y C  C + FS  ++++ H  +HN  + + C QC + F C
Sbjct: 399 TFSFSSSLREHETTHTGEKPYECKQCGKTFSFSSSLQRHERTHNAEKPYECKQCGKAFRC 458

Query: 190 MPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNL 247
             Y R H++ H+G   Y C  C K F R   +R+H + H G + + CK CSK FS   +L
Sbjct: 459 SSYFRIHERSHTGEKPYECKQCGKVFIRSSSFRLHERTHTGEKPYECKLCSKTFSFSSSL 518

Query: 248 KNHMVLH-DVRAYVCELCARQFTRVDHFNHHRR 279
           + H  +H   + + C+ C + F R      H R
Sbjct: 519 REHEKIHTGNKPFECKQCGKAFLRSSQIRLHER 551

May be involved in transcriptional regulation.

Pongo abelii (taxid: 9601)

>sp|Q5R5U3|ZN271_PONAB Zinc finger protein 271 OS=Pongo abelii GN=ZNF271 PE=2 SV=1

 Score =  125 bits (315), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/257 (33%), Positives = 131/257 (50%), Gaps = 20/257 (7%)

Query: 33  HPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTF--LSTLTGTPQGARGRAVYLSR 89
           + C +C + F    +L  H + H G   YPC +C KTF  LS L           +   R
Sbjct: 303 YKCNECGKAFNQSSVLILHQRIHTGEKPYPCDQCSKTFSRLSDL-----------INHQR 351

Query: 90  MSTTLTRHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAG 148
           + T    +PC QC++ F+    L  H + H G   Y C EC KTF  +S L  H+++H G
Sbjct: 352 IHTGEKPYPCNQCNKMFSRRSDLVKHHRIHTGEKPYECDECGKTFSQSSNLILHQRIHTG 411

Query: 149 VR-YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGIT-Y 205
            + Y C  C + FS  + +  H   H G + +AC+QCD++FS    L +HQ++HSG   Y
Sbjct: 412 EKPYPCSDCTKSFSRRSDLVKHQRIHTGEKPYACNQCDKSFSQSSDLTKHQRVHSGEKPY 471

Query: 206 SCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCEL 263
            C SC K+F++     +H ++H G + + C +CSK FS   +L  H  +H   + Y C  
Sbjct: 472 HCNSCEKAFSQSSDLILHQRIHTGEKPYLCTQCSKSFSQNSDLIKHQRIHTGEKPYKCSE 531

Query: 264 CARQFTRVDHFNHHRRL 280
           C + F++      H+R+
Sbjct: 532 CRKAFSQCSALTLHQRI 548

May be involved in transcriptional regulation.

Pongo abelii (taxid: 9601)

>sp|Q4R3I5|ZN668_MACFA Zinc finger protein 668 OS=Macaca fascicularis GN=ZNF668 PE=2 SV=1

 Score =  125 bits (315), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 129/262 (49%), Gaps = 16/262 (6%)

Query: 26  SSTTPTRHPCPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTLTGTPQGARGRA 84
           S+  P  + CP C + + T   L++H ++H G   +PCPEC + F+  +           
Sbjct: 77  SAAKPRPYACPLCPKAYKTAPELRSHGRSHTGEKPFPCPECGRRFMQPVC--------LR 128

Query: 85  VYLSRMSTTLTRHPCPQCSRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTSGLREHR 143
           V+L+  +  L    C  C + +  +  LK H + H G   Y C +C K+F   S  R+HR
Sbjct: 129 VHLASHAGELPFR-CAHCPKAYGALSKLKIHQRGHTGERPYACADCGKSFADPSVFRKHR 187

Query: 144 KVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHS 201
           + HAG+R Y C  C + ++    ++ H  SH G +   C +C ++FS    L  HQ++H+
Sbjct: 188 RTHAGLRPYSCERCGKAYAELKDLRNHERSHTGERPFLCSECGKSFSRSSSLTCHQRIHA 247

Query: 202 GIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRA 258
               Y CP+C K F +   Y+ H + H G +   C  C + FS+  + + H   H+ V+ 
Sbjct: 248 AQKPYRCPACGKGFTQLSSYQSHERTHSGEKPFLCPRCGRMFSDPSSFRRHQRAHEGVKP 307

Query: 259 YVCELCARQFTRVDHFNHHRRL 280
           Y CE C + F +      HRR+
Sbjct: 308 YHCEKCGKDFRQPADLAMHRRV 329

May be involved in transcriptional regulation.

Macaca fascicularis (taxid: 9541)

>sp|Q14591|ZN271_HUMAN Zinc finger protein 271 OS=Homo sapiens GN=ZNF271 PE=2 SV=4

 Score =  125 bits (314), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/257 (33%), Positives = 131/257 (50%), Gaps = 20/257 (7%)

Query: 33  HPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTF--LSTLTGTPQGARGRAVYLSR 89
           + C +C + F    +L  H + H G   YPC +C KTF  LS L           +   R
Sbjct: 286 YKCNECGKAFNQSSVLILHQRIHTGEKPYPCDQCSKTFSRLSDL-----------INHQR 334

Query: 90  MSTTLTRHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAG 148
           + T    +PC QC++ F+    L  H + H G   Y C EC KTF  +S L  H+++H G
Sbjct: 335 IHTGEKPYPCNQCNKMFSRRSDLVKHHRIHTGEKPYECDECGKTFSQSSNLILHQRIHTG 394

Query: 149 VR-YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGIT-Y 205
            + Y C  C + FS  + +  H   H G + +AC+QCD++FS    L +HQ++HSG   Y
Sbjct: 395 EKPYACSDCTKSFSRRSDLVKHQRIHTGEKPYACNQCDKSFSQSSDLTKHQRVHSGEKPY 454

Query: 206 SCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCEL 263
            C SC K+F++     +H ++H G + + C +CSK FS   +L  H  +H   + Y C  
Sbjct: 455 HCNSCEKAFSQSSDLILHQRIHTGEKYYLCTQCSKSFSQISDLIKHQRIHTGEKPYKCSE 514

Query: 264 CARQFTRVDHFNHHRRL 280
           C + F++      H+R+
Sbjct: 515 CRKAFSQCSALTLHQRI 531

May be involved in transcriptional regulation. Plays a role in the EBV-mediated transformation process.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
256085592	486	zinc finger protein [Schistosoma mansoni	0.836	0.506	0.377	5e-41
353233176	486	putative zinc finger protein [Schistosom	0.816	0.493	0.365	1e-40
260794567	397	hypothetical protein BRAFLDRAFT_57705 [B	0.802	0.594	0.363	4e-36
260788516	344	hypothetical protein BRAFLDRAFT_233347 [	0.795	0.680	0.370	4e-36
260805182	382	hypothetical protein BRAFLDRAFT_80527 [B	0.789	0.607	0.361	7e-34
260795687	945	hypothetical protein BRAFLDRAFT_65421 [B	0.802	0.249	0.355	8e-34
260794579	1068	hypothetical protein BRAFLDRAFT_119633 [	0.846	0.233	0.367	8e-34
260805192	372	hypothetical protein BRAFLDRAFT_80521 [B	0.836	0.661	0.350	8e-34
260794583	1033	hypothetical protein BRAFLDRAFT_71028 [B	0.829	0.236	0.345	8e-34
260795655	416	hypothetical protein BRAFLDRAFT_194454 [	0.809	0.572	0.358	9e-34

>gi|256085592|ref|XP_002579001.1| zinc finger protein [Schistosoma mansoni]

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 99/262 (37%), Positives = 147/262 (56%), Gaps = 16/262 (6%)

Query: 32  RHPCPQCSRDFATVKILKTHLKT-HEGIIYPCPECDKTFLSTLTGTPQGARGRAVYLSRM 90
           +HPC QC R F T   L  H+K  HEG+ +PC EC K F S       GA  R  +L  +
Sbjct: 233 KHPCNQCDRKFGTKSKLNDHIKVAHEGVTFPCDECGKIFSSN------GALCR--HLQSV 284

Query: 91  STTLTRHPCPQCSRDFATVKILKTHLK-THEGIIYPCPECDKTFLSTSGLREHRK-VHAG 148
              + ++PC QC R + +   L  HL+  HEG+ + C  C+K F    GL EH K +H G
Sbjct: 285 HQGI-KYPCNQCDRLYTSRFHLNEHLRANHEGVKFTCDLCNKEFAFKVGLDEHNKNIHKG 343

Query: 149 VRYICHACPREFSSEATMKAHV-ASHNGVQHACDQCDRTFSCMPYLRQHQK-LHSGITYS 206
           ++Y C  C ++FSS+  +  HV A H G+++ C QCDR F+C   L  H K +H GIT+ 
Sbjct: 344 IKYPCDQCSKKFSSKCMLNIHVKAIHKGIKYICKQCDRKFNCKSNLNGHMKSVHEGITFQ 403

Query: 207 CPSCSKSFNRKDRYRMHLK-LHQGVRHTCKECSKEFSNEYNLKNHM-VLHDVRAYVCELC 264
           C  C + F  K +   H++ +H+GVR TC++C K+F+ +  L +H+ V+H+   Y C+ C
Sbjct: 404 CDECDQKFTAKCQLNRHIQSIHEGVRFTCEQCDKKFTKQSTLHDHVKVVHEGLRYSCQFC 463

Query: 265 ARQFTRVDHFNHHRRLQHDPEE 286
            + F+   +   H R  H+ EE
Sbjct: 464 GKSFSTKKYLRKHVRNNHEREE 485

Source: Schistosoma mansoni

Species: Schistosoma mansoni

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|353233176|emb|CCD80531.1| putative zinc finger protein [Schistosoma mansoni]

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 98/268 (36%), Positives = 143/268 (53%), Gaps = 28/268 (10%)

Query: 32  RHPCPQCSRDFATVKILKTHLKT-HEGIIYPCPECDKTFLST------LTGTPQGARGRA 84
           +HPC QC R F T   L  H+K  HEG+ +PC EC K F S       L    QG     
Sbjct: 233 KHPCNQCDRKFGTKSKLNDHIKVAHEGVTFPCDECGKIFSSNSALCRHLQSVHQG----- 287

Query: 85  VYLSRMSTTLTRHPCPQCSRDFATVKILKTHLK-THEGIIYPCPECDKTFLSTSGLREHR 143
                      ++PC QC R + +   L  HL+  HEG+ + C  C+K F    GL EH 
Sbjct: 288 ----------IKYPCNQCDRLYTSRFHLNEHLRANHEGVKFTCDLCNKEFAFKVGLDEHN 337

Query: 144 K-VHAGVRYICHACPREFSSEATMKAHV-ASHNGVQHACDQCDRTFSCMPYLRQHQK-LH 200
           K +H G++Y C  C ++FSS+  +  HV A H G+++ C QCDR F+C   L  H K +H
Sbjct: 338 KNIHKGIKYPCDQCSKKFSSKCMLNIHVKAIHKGIKYICKQCDRKFNCKSNLNGHMKSVH 397

Query: 201 SGITYSCPSCSKSFNRKDRYRMHLK-LHQGVRHTCKECSKEFSNEYNLKNHM-VLHDVRA 258
            GIT+ C  C + F  K +   H++ +H+GVR TC++C K+F+ +  L +H+ V+H+   
Sbjct: 398 EGITFQCDECDQKFTAKCQLNRHIQSIHEGVRFTCEQCDKKFTKQSTLHDHVKVVHEGLR 457

Query: 259 YVCELCARQFTRVDHFNHHRRLQHDPEE 286
           Y C+ C + F+   +   H R  H+ EE
Sbjct: 458 YSCQFCGKSFSTKKYLRKHVRNNHEREE 485

Source: Schistosoma mansoni

Species: Schistosoma mansoni

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|260794567|ref|XP_002592280.1| hypothetical protein BRAFLDRAFT_57705 [Branchiostoma floridae] gi|229277496|gb|EEN48291.1| hypothetical protein BRAFLDRAFT_57705 [Branchiostoma floridae]

 Score =  157 bits (398), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 93/256 (36%), Positives = 141/256 (55%), Gaps = 20/256 (7%)

Query: 33  HPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTF--LSTLTGTPQGARGRAVYLSR 89
           H C +CS+ F+T   LK+HL+TH G   Y C EC K F  LS L    +   G   Y   
Sbjct: 38  HRCEECSKQFSTASKLKSHLRTHTGEKPYKCEECSKQFSHLSDLKKHMRTHTGEKPY--- 94

Query: 90  MSTTLTRHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAG 148
                    C +CS+ F  +  LK H++TH G   Y C EC++ F   S L+ H + H G
Sbjct: 95  --------KCEECSKQFRELGYLKKHMRTHTGEKPYKCEECNRQFSQLSALKTHMRTHTG 146

Query: 149 VR-YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGIT-Y 205
            + Y C  C R+FS+ + +K H+ +H G + + C+ C R FS + +L++H + H+G   Y
Sbjct: 147 EKPYSCEECSRQFSTTSRLKIHLRTHTGEKPYKCEDCSRQFSQLSHLKRHMRTHTGDKPY 206

Query: 206 SCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCEL 263
           SC  C K F      ++H + H G + +TC+ECS++F+ + +LK+HM  H   + Y CE 
Sbjct: 207 SCEECCKQFGTTRNLKIHFRTHTGEKPYTCEECSRQFTTQGHLKSHMRTHTGEKPYTCEE 266

Query: 264 CARQFTRVDHFNHHRR 279
           C+RQF+++ H   H R
Sbjct: 267 CSRQFSQLGHLKEHMR 282

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260788516|ref|XP_002589295.1| hypothetical protein BRAFLDRAFT_233347 [Branchiostoma floridae] gi|229274472|gb|EEN45306.1| hypothetical protein BRAFLDRAFT_233347 [Branchiostoma floridae]

 Score =  157 bits (398), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/254 (37%), Positives = 142/254 (55%), Gaps = 20/254 (7%)

Query: 35  CPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTF--LSTLTGTPQGARGRAVYLSRMS 91
           C +CS+ F+ +  LKTH++TH G+  Y C EC K F  LSTL    +   G   Y     
Sbjct: 40  CEECSKQFSQLGNLKTHMQTHTGVKPYKCEECSKQFSELSTLKKHMRTHTGEKPY----- 94

Query: 92  TTLTRHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVR 150
                  C +C+R F+ +  LK+H++TH G   Y C EC K F     L+EH + H G +
Sbjct: 95  ------KCEECTRQFSQLSHLKSHMRTHTGEKPYMCEECSKQFSRLDHLKEHMRTHTGEK 148

Query: 151 -YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGIT-YSC 207
            Y C  C ++FS+   +K H  +H G + + C++C R FS + +L++H + H+G   Y C
Sbjct: 149 PYRCEECSKQFSTLGNLKKHKRTHTGEKPYKCEECSRQFSHLSHLKRHMQTHTGQKPYKC 208

Query: 208 PSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCELCA 265
             CSK F+R D  + H++ H G + + C+ECS++FS   +LK HM  H   + Y CE C+
Sbjct: 209 EECSKLFSRPDELKKHMQTHTGEKPYRCEECSRQFSELVSLKKHMRTHTGEKPYRCEECS 268

Query: 266 RQFTRVDHFNHHRR 279
           +QF+R+D    H R
Sbjct: 269 KQFSRLDRLKTHMR 282

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260805182|ref|XP_002597466.1| hypothetical protein BRAFLDRAFT_80527 [Branchiostoma floridae] gi|229282731|gb|EEN53478.1| hypothetical protein BRAFLDRAFT_80527 [Branchiostoma floridae]

 Score =  150 bits (379), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 91/252 (36%), Positives = 138/252 (54%), Gaps = 20/252 (7%)

Query: 35  CPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTF--LSTLTGTPQGARGRAVYLSRMS 91
           C +CSR F+ +  LKTHL+TH G   Y C EC + F  L  L    +   G   Y+    
Sbjct: 87  CDECSRQFSQLGDLKTHLRTHTGEKPYRCEECSRQFSRLGHLKSHMRTHTGEKPYM---- 142

Query: 92  TTLTRHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVR 150
                  C +CSR F+ +  LK+H++TH G   Y C EC++ F   S  + H + H G +
Sbjct: 143 -------CEECSRQFSRLDSLKSHIRTHAGEKPYRCEECNRQFSKLSDFKRHMRAHTGEK 195

Query: 151 -YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGIT-YSC 207
            Y C  C ++FS  + +K H+ +H G + + CD+C R FS +  L+ H + H+G   Y C
Sbjct: 196 PYRCEECSKQFSKLSNLKRHMRTHTGEKSYRCDECSRQFSQLGDLKTHLRTHTGEKPYRC 255

Query: 208 PSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCELCA 265
             CSK F+R    + H++ H G + + C+ECS++FS   +LK+H+  H   + Y CE C+
Sbjct: 256 EECSKQFSRLGHLKSHMRTHTGEKPYMCEECSRQFSRLDSLKSHIRTHTGEKPYRCEKCS 315

Query: 266 RQFTRVDHFNHH 277
           RQF+R+ H   H
Sbjct: 316 RQFSRLGHLKKH 327

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260795687|ref|XP_002592836.1| hypothetical protein BRAFLDRAFT_65421 [Branchiostoma floridae] gi|229278060|gb|EEN48847.1| hypothetical protein BRAFLDRAFT_65421 [Branchiostoma floridae]

 Score =  150 bits (378), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 91/256 (35%), Positives = 137/256 (53%), Gaps = 20/256 (7%)

Query: 33  HPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTF--LSTLTGTPQGARGRAVYLSR 89
           + C +CSR F+ +  LKTH++TH G   Y C EC + F  L+TL    +   G   Y   
Sbjct: 580 YKCEECSRQFSQLDSLKTHMRTHTGEKPYRCEECSRQFSQLATLKTHMRTHTGEKPYR-- 637

Query: 90  MSTTLTRHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAG 148
                    C +CSR F+ +  LKTH++TH G   Y C EC + F     L  H + H G
Sbjct: 638 ---------CEECSRQFSVLGALKTHMRTHTGEKPYRCEECSRQFSELGALEIHMRTHTG 688

Query: 149 VR-YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGIT-Y 205
            + Y C  C R+FS    +K H+ +H G + + C++CDR FS +  L++H + H+G   Y
Sbjct: 689 EKPYRCEECDRQFSRLGALKKHMRTHTGEKPYRCEECDRQFSRLDSLKKHMRTHTGEKPY 748

Query: 206 SCPSCSKSFNRKDRYRMHLKLHQG-VRHTCKECSKEFSNEYNLKNHMVLH-DVRAYVCEL 263
            C  C + F+R D  + H++ H G  R+ C+ECS++FS    L  H+  H   + Y C+ 
Sbjct: 749 RCEECDRQFSRLDSLKKHMRTHTGEKRYMCEECSRQFSQLGALNTHIRTHTGEKPYRCDE 808

Query: 264 CARQFTRVDHFNHHRR 279
           C++QF+R+D    H R
Sbjct: 809 CSKQFSRLDTLKSHMR 824

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260794579|ref|XP_002592286.1| hypothetical protein BRAFLDRAFT_119633 [Branchiostoma floridae] gi|229277502|gb|EEN48297.1| hypothetical protein BRAFLDRAFT_119633 [Branchiostoma floridae]

 Score =  150 bits (378), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 101/275 (36%), Positives = 143/275 (52%), Gaps = 26/275 (9%)

Query: 31  TRHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTF--LSTLTGTPQGARGRAVY- 86
           T H C +CS+ F+T   LK HL+TH G   Y C EC K F  LS+L    +   G   Y 
Sbjct: 22  TLHRCEECSKQFSTAHNLKIHLRTHTGEKPYRCEECSKQFSQLSSLKSHMRTHSGEKPYK 81

Query: 87  ---LSR---MSTTLTRH----------PCPQCSRDFATVKILKTHLKTHEGII-YPCPEC 129
               SR    S++L RH           C QC+R F  +  LK H++TH G   Y C  C
Sbjct: 82  CEECSRRFSTSSSLKRHIRTHTGEKPYTCEQCNRQFVELGDLKKHMRTHTGEKPYKCEVC 141

Query: 130 DKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTF 187
              F   S L+ H + H G + Y C  C ++FS+ + +K H+ +H G + + C++C + F
Sbjct: 142 STHFSELSKLKRHMRTHTGEKPYSCQECSKQFSTRSKLKEHMRTHTGEKPYKCEECSKQF 201

Query: 188 SCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGV-RHTCKECSKEFSNEY 245
           S + +L+ H + H+G   Y C  CSK F      + H++ H GV R+ C ECSK+FS + 
Sbjct: 202 SKLNHLKTHMRTHTGEKPYRCEECSKQFTLLHNLKTHMRTHTGVKRYKCNECSKQFSTQG 261

Query: 246 NLKNHMVLH-DVRAYVCELCARQFTRVDHFNHHRR 279
           NLK HM  H   + Y CE C RQF+ + +   H R
Sbjct: 262 NLKKHMHAHTGEKPYRCEECNRQFSELSNLKRHIR 296

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260805192|ref|XP_002597471.1| hypothetical protein BRAFLDRAFT_80521 [Branchiostoma floridae] gi|229282736|gb|EEN53483.1| hypothetical protein BRAFLDRAFT_80521 [Branchiostoma floridae]

 Score =  150 bits (378), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 96/274 (35%), Positives = 143/274 (52%), Gaps = 28/274 (10%)

Query: 33  HPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTF---------LSTLTG-TPQGAR 81
           H C +CSR F+ +  LKTH++TH G   Y C EC + F         + T TG  P    
Sbjct: 78  HKCEECSRQFSVLSTLKTHMRTHTGEKPYMCEECSRQFSLLSNLKTHMRTHTGEKPYSCE 137

Query: 82  GRAVYLSRMSTTLTRH----------PCPQCSRDFATVKILKTHLKTHEGII-YPCPECD 130
           G +   S++S  L RH           C +C++ F+ +  LK H++TH G   Y C EC 
Sbjct: 138 GCSRQFSKLS-NLKRHMRAHTGEKPYRCEECTKQFSQLGDLKRHMRTHTGEKPYTCEECS 196

Query: 131 KTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFS 188
           + F     L+ H + H G + Y C  C R FS    +K H+ +H G + H C++C R FS
Sbjct: 197 RQFSQHGDLKTHMRTHTGEKPYRCEECSRRFSQHGDLKKHMRTHTGEKPHRCEECSRQFS 256

Query: 189 CMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYN 246
            +  L+ H + H+G   Y C  CS+ F++    + H++ H G + + C+ECS++FS   N
Sbjct: 257 QLGNLKTHMRTHTGEKPYKCEECSRRFSQHGDLKTHMRTHTGEKPYRCEECSRQFSQLGN 316

Query: 247 LKNHMVLH-DVRAYVCELCARQFTRVDHFNHHRR 279
           LK HM  H + + Y CE C+RQF++  H   H R
Sbjct: 317 LKTHMRTHTEEKPYRCEECSRQFSQHGHLKTHMR 350

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260794583|ref|XP_002592288.1| hypothetical protein BRAFLDRAFT_71028 [Branchiostoma floridae] gi|229277504|gb|EEN48299.1| hypothetical protein BRAFLDRAFT_71028 [Branchiostoma floridae]

 Score =  150 bits (378), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 92/266 (34%), Positives = 144/266 (54%), Gaps = 22/266 (8%)

Query: 35  CPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTF--LSTLTGTPQGARGRAVYLSRMS 91
           C QC + F+ +  LKTH +TH G   Y C EC K F  L+ L    +   G   Y     
Sbjct: 96  CEQCGKQFSRLDHLKTHKQTHTGEKPYSCEECGKQFCQLANLESHMRTHTGEKPY----- 150

Query: 92  TTLTRHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVR 150
                  C +CSR F+ +  LK H++TH G   Y C EC + F     L+ H + H G +
Sbjct: 151 ------KCEECSRQFSQLGELKKHMRTHTGEKPYRCEECSRQFSELCSLKTHMRTHTGEK 204

Query: 151 -YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGIT-YSC 207
            Y C  C ++FS    +K+H+ +H G + + C++C R FS + +L++H + H+G   Y+C
Sbjct: 205 PYKCEECSKQFSQLGELKSHMRTHTGEKPYGCEECSRQFSRLGHLKRHMRTHTGEKPYNC 264

Query: 208 PSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCELCA 265
             CS+ F+     + H+++H G + + C+ECS++FS   +LK H+  H   ++Y CE C+
Sbjct: 265 EKCSREFSEVGSLKKHMRIHTGEKPYRCEECSRQFSRLGHLKRHIGTHTGDKSYRCEECS 324

Query: 266 RQFTRVDHFNHHRRLQ--HDPEEFEK 289
           RQF+R+DH   H R      P ++EK
Sbjct: 325 RQFSRLDHLKEHMRTHTGEKPYKWEK 350

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260795655|ref|XP_002592820.1| hypothetical protein BRAFLDRAFT_194454 [Branchiostoma floridae] gi|229278044|gb|EEN48831.1| hypothetical protein BRAFLDRAFT_194454 [Branchiostoma floridae]

 Score =  150 bits (378), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 91/254 (35%), Positives = 138/254 (54%), Gaps = 16/254 (6%)

Query: 33  HPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTLTGTPQGARGRAVYLSRMS 91
           + C +CS+ F+ +  LKTH++TH G   Y C EC K F S L        G      R+ 
Sbjct: 169 YSCEECSKQFSQLGDLKTHIRTHTGEKPYRCEECSKQF-SQL--------GDLKKHIRIH 219

Query: 92  TTLTRHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVR 150
           T    + C +CS+ F  ++ LK H++TH G   Y C EC K F     L+ H + H G +
Sbjct: 220 TGEKPYKCEECSKQFNQLRHLKEHMRTHTGEKPYRCEECSKQFSQLDSLKRHMQTHTGEK 279

Query: 151 -YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGIT-YSC 207
            Y C  C R+FS+   +K H+ +H G + + C++C + FS +  L+ H + H+G   Y C
Sbjct: 280 PYGCEECSRQFSTSGNLKTHMRTHTGEKPYKCEECSKQFSEIGALKTHMRTHTGEKPYKC 339

Query: 208 PSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCELCA 265
             CS+ F+  D  + H++ H G + + C+ECS++FS +  LK HM  H   + Y CE C+
Sbjct: 340 EECSRQFSVLDSLKKHMRTHTGEKPYRCEECSRQFSEQGTLKKHMRTHTGEKPYKCEECS 399

Query: 266 RQFTRVDHFNHHRR 279
           RQF+ +DH   H R
Sbjct: 400 RQFSLLDHLKSHMR 413

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
ZFIN|ZDB-GENE-070424-48	419	zgc:162971 "zgc:162971" [Danio	0.802	0.563	0.341	5.3e-40
ZFIN|ZDB-GENE-080723-34	496	zgc:194336 "zgc:194336" [Danio	0.833	0.493	0.339	1.6e-38
ZFIN|ZDB-GENE-030131-9038	364	si:ch211-222k6.2 "si:ch211-222	0.799	0.645	0.335	1.6e-38
ZFIN|ZDB-GENE-110913-148	1029	si:dkey-14o6.6 "si:dkey-14o6.6	0.819	0.234	0.333	1.9e-38
ZFIN|ZDB-GENE-070424-76	347	zgc:162962 "zgc:162962" [Danio	0.802	0.680	0.337	1.5e-37
ZFIN|ZDB-GENE-110913-42	420	si:dkey-176f19.6 "si:dkey-176f	0.833	0.583	0.314	1.9e-37
UNIPROTKB|I3L8J9	631	ZNF77 "Uncharacterized protein	0.829	0.386	0.314	3.7e-37
ZFIN|ZDB-GENE-110914-166	1002	si:ch73-266f23.2 "si:ch73-266f	0.809	0.237	0.326	4.5e-37
ZFIN|ZDB-GENE-070705-202	426	si:ch73-138e16.3 "si:ch73-138e	0.829	0.572	0.314	6.3e-37
ZFIN|ZDB-GENE-110913-140	485	si:dkey-54i3.4 "si:dkey-54i3.4	0.823	0.498	0.305	1.3e-36

ZFIN|ZDB-GENE-070424-48 zgc:162971 "zgc:162971" [Danio rerio (taxid:7955)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 86/252 (34%), Positives = 134/252 (53%)

Query:    35 CPQCSRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTT 93
             C +C + F   K LK H + H G+ ++ C  CDKTF+   +   Q       +L ++ T 
Sbjct:   169 CSECGKRFRIRKNLKDHQRFHTGVNLFSCDHCDKTFVFE-SQLKQ-------HL-KVHTG 219

Query:    94 LTRHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVR-Y 151
                H C  C + F+ ++ L+ H   H G+  + C +C K+F ++S L+ H+ +H G + +
Sbjct:   220 AKPHVCSFCGKGFSRLENLRIHNSVHTGMRPHVCFDCGKSFSTSSHLKTHQMIHTGEKPF 279

Query:   152 ICHACPREFSSEATMKAHVASHNGVQH-ACDQCDRTFSCMPYLRQHQKLHSGIT-YSCPS 209
              C  C + F   + +K H+A+H GV+  +CDQCD+TF C  YLR H+K+H  +  + C  
Sbjct:   280 ACTQCGKRFIYNSVLKDHLATHTGVKSFSCDQCDKTFVCASYLRAHRKVHIPVKPHVCSF 339

Query:   210 CSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQ 267
             C K F R D   +H+ +H GVR H C +C K FS  YNLK H   H   + Y C  C + 
Sbjct:   340 CGKRFLRLDTLEIHMSVHTGVRPHVCSDCGKSFSTSYNLKTHQRTHTGEKPYSCSHCGKS 399

Query:   268 FTRVDHFNHHRR 279
             F  +     H++
Sbjct:   400 FAFLGDLKSHKK 411

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-080723-34 zgc:194336 "zgc:194336" [Danio rerio (taxid:7955)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 89/262 (33%), Positives = 130/262 (49%)

Query:    33 HPCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMST 92
             + C QC + F     L  H + H      C +C K+F       P G   R   L     
Sbjct:   120 YTCDQCGKSFRCRDALTCHRRIHSERCVKCAQCGKSF-------PDGTCMRNHLLVHSGE 172

Query:    93 TLTRHPCPQCSRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTSGLREHRKVHAGVR- 150
                R  C +C + F   + LKTH++ H G  ++ C  C K+F   +GL+ H ++H+G R 
Sbjct:   173 KPFR--C-RCGKSFRFSRNLKTHMRIHSGERLFVCCVCGKSFCHKAGLKNHSRIHSGERP 229

Query:   151 YICHACPREFSSEATMKAHV-ASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG-ITYSC 207
             + C  C + F+ +AT+ AH  A+H G   HAC  C ++FS    L+ H ++HSG + Y C
Sbjct:   230 FSCAECGKSFAYKATLSAHESAAHRGESPHACRHCGKSFSQKGNLKTHMRIHSGEMPYEC 289

Query:   208 PSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCA 265
               C KSF RK+    H   H G   HTCK C K FS + NLK HM +H   R ++C  C 
Sbjct:   290 VQCGKSFRRKETLNTHAHTHTGDSPHTCKLCGKSFSRKGNLKTHMRIHSGERPFICAHCG 349

Query:   266 RQFTRVDHFNHHRRLQHDPEEF 287
             + F+R +  N+H +     + F
Sbjct:   350 QSFSRKETLNYHMKTHSSEDRF 371

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030131-9038 si:ch211-222k6.2 "si:ch211-222k6.2" [Danio rerio (taxid:7955)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 85/253 (33%), Positives = 126/253 (49%)

Query:    35 CPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTL-TGTPQGARGRAVYLSRMST 92
             CPQC + F+  + L  H+K H G   Y C +CDK F  TL T   +  +   ++ ++M  
Sbjct:    60 CPQCGKSFSCDQSLNLHMKFHRGTKPYACDQCDKIF--TLKTNLNEHMK---IHTAKMLY 114

Query:    93 TLTRHPCPQCSRDFATVKILKTHLKTHE-GIIYPCPECDKTFLSTSGLREHRKVHAGVR- 150
             T     C QC   F     L  H+K+H   + + C  C K F       EH K+H G R 
Sbjct:   115 T-----CGQCGTIFTDEGNLNEHMKSHVVEMPFTCGHCGKRFTYKGNFNEHMKIHTGERP 169

Query:   151 YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG-ITYSCP 208
             Y C  C + F+ +  +  H+  H G + H+CDQC + F     L  H K+H+G + Y C 
Sbjct:   170 YACDQCGKRFTHKGNLNKHIIVHTGEKPHSCDQCGKKFKLKHILNDHMKIHTGEMPYMCD 229

Query:   209 SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCELCAR 266
              C  SF + D +R+HL+ H GVR  +C +C K F     LK H+ +H  V+ +VC LC +
Sbjct:   230 QCGTSFRKLDTFRLHLRYHSGVRPFSCDQCGKHFFTSVALKYHVKVHAKVKPHVCSLCGK 289

Query:   267 QFTRVDHFNHHRR 279
              F  +     H++
Sbjct:   290 SFMELSGLKKHQK 302

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-110913-148 si:dkey-14o6.6 "si:dkey-14o6.6" [Danio rerio (taxid:7955)]

 Score = 422 (153.6 bits), Expect = 1.9e-38, P = 1.9e-38
 Identities = 87/261 (33%), Positives = 139/261 (53%)

Query:    35 CPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTT 93
             CPQC + F+    LK H+K H G+  Y C EC+KTF++      +  R +     R+ T 
Sbjct:   682 CPQCGKSFSQ-SYLKKHMKIHTGVREYMCLECEKTFITAA----ELKRHK-----RIHTG 731

Query:    94 LTRHPCPQCSRDFATVKILKTHLKTHEGI-IYPCPECD--KTFLSTSGLREHRKVHAGVR 150
                + C QCS+ FA    LKTH + H G  +Y C  C+  K+F  +S +  H ++H G +
Sbjct:   732 EKPYKCSQCSKRFAHSGTLKTHERIHTGEKLYKCSHCNCGKSFNQSSNINLHMRIHTGEK 791

Query:   151 -YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGIT-YSC 207
              + C  C + FS  +++  H+  H G +   C QC ++FS    L +H ++H+G   ++C
Sbjct:   792 PFTCTQCRKSFSLLSSLNQHMRIHTGEKPFTCTQCGKSFSLSSSLNRHMRIHTGEKPFTC 851

Query:   208 PSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCA 265
               C KSF+    +  H+++H G +  TC +C K FS   +L NHM +H   + ++C  C 
Sbjct:   852 TQCGKSFSLSSSFNQHMRMHTGEKPFTCTQCGKSFSQSSHLYNHMRIHTGEKPFICTQCG 911

Query:   266 RQFTRVDHFNHHRRLQHDPEE 286
             + F+   H NHH R+ H  E+
Sbjct:   912 KSFSYSSHLNHHMRI-HTGEK 931

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

ZFIN|ZDB-GENE-070424-76 zgc:162962 "zgc:162962" [Danio rerio (taxid:7955)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 85/252 (33%), Positives = 126/252 (50%)

Query:    33 HPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTLTGTPQGARGRAVYLSRMS 91
             + CPQC + FA    L+ HL+ H G   Y CP+C K F      T        +++ R+ 
Sbjct:    93 YTCPQCPKSFARKDSLRMHLRLHTGEKPYACPQCAKAFAQKEHLT--------IHI-RIH 143

Query:    92 TTLTRHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVR 150
             T      C QC   FA    LK H + H G+  Y CP C K F      R+H ++H+GV+
Sbjct:   144 TGEKPFVCDQCGSSFARSDSLKNHSRIHTGVKPYSCPHCAKRFTWLHNFRKHIRLHSGVK 203

Query:   151 -YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGIT-YSC 207
              Y C  C ++F S + +K H+ SH+  + H+C  C ++F  +   + HQKLHSG+  + C
Sbjct:   204 PYSCEDCGKKFPSASVLKYHMQSHSEERPHSCSTCGKSFIQLDAFKMHQKLHSGVRPFVC 263

Query:   208 PSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCA 265
               C KSFN+      H ++H G + +TC  C K F++   LK H  +H   + + C  C 
Sbjct:   264 SHCGKSFNKASNLTEHFRIHTGEKPYTCSLCGKSFTHSATLKAHERIHTGEKPHHCTQCG 323

Query:   266 RQFTRVDHFNHH 277
             + F R  H   H
Sbjct:   324 KSFGRASHLLAH 335

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-110913-42 si:dkey-176f19.6 "si:dkey-176f19.6" [Danio rerio (taxid:7955)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 83/264 (31%), Positives = 129/264 (48%)

Query:    33 HP--CPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTLTGTPQGARGRAVYLSR 89
             HP  C QC + F  +  LK H++ H G   Y C +C+K+F        + AR  A ++ R
Sbjct:   108 HPYTCKQCGKSFPKIHFLKAHMRIHIGERPYTCQQCEKSF--------RHARNLAAHM-R 158

Query:    90 MSTTLTRHPCPQCSRDFATVKILKTHLKTH-EGIIYPCPECDKTFLSTSGLREHRKVHAG 148
             + T    + CPQC + F     L+ H++TH E   + C +C K+F     L+ H ++H G
Sbjct:   159 VHTGQKPYSCPQCGKSFKQNNNLEVHMRTHTEERSFTCTQCGKSFAKKQNLKIHMRIHTG 218

Query:   149 VR-YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGIT-Y 205
              + Y C  C + F S++T   H  +H G + + C +C ++F        H ++H+G   Y
Sbjct:   219 EKPYTCTECGKSFRSKSTFNIHKRTHTGEKPYRCTECGKSFPNKSTFNNHMRIHTGEKPY 278

Query:   206 SCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCEL 263
              C  C KSF RK     H++ H G +   C +C K F+ + +L NHM  H     + C+ 
Sbjct:   279 RCTECGKSFIRKSTLNYHMRTHTGEKLFACVQCGKSFTTKLSLMNHMNGHTGTIVFTCDQ 338

Query:   264 CARQFTRVDHFNHHRRLQHDPEEF 287
             C +  TR D    H +  H  E F
Sbjct:   339 CGKSLTRKDSIKQHMQT-HSGERF 361

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|I3L8J9 ZNF77 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 403 (146.9 bits), Expect = 3.7e-37, P = 3.7e-37
 Identities = 82/261 (31%), Positives = 128/261 (49%)

Query:    35 CPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTT 93
             C +C + F+  K  + HLKTH G+  Y C EC K +  +        R       R  + 
Sbjct:   271 CAECGKAFSCPKYFRRHLKTHSGVKPYECTECGKAYSCS-----SSLREHV----RTHSE 321

Query:    94 LTRHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVR-Y 151
                + C  C + F   +  K H++ H G+  Y C EC K +  ++ LREH ++H G R +
Sbjct:   322 EKPYECQHCGKAFRHQRYFKKHVRMHSGVKPYECTECGKAYSCSTSLREHERIHTGERPF 381

Query:   152 ICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPY-LRQHQKLHSGIT-YSCP 208
              C  C + F+  A+++ H+ +H+G + + C QC + F C P  LR+H ++HS    Y C 
Sbjct:   382 ECQHCGKAFTRHASLRGHMRTHSGERAYECTQCGKAF-CWPSSLRKHVRMHSEEKPYGCQ 440

Query:   209 SCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQ 267
              C K+F      R H++ H G  H C+ C K FS    L  H+  H   + Y C+ C + 
Sbjct:   441 QCGKAFWYPANLRGHMRTHTGKIHVCEVCGKSFSYSCQLARHVRTHTGEKPYECQECGKA 500

Query:   268 FTRVDHFNHHRRLQHDPEEFE 288
             FT + HF  H R+    + +E
Sbjct:   501 FTSISHFREHVRMHTGEKPYE 521

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-110914-166 si:ch73-266f23.2 "si:ch73-266f23.2" [Danio rerio (taxid:7955)]

 Score = 409 (149.0 bits), Expect = 4.5e-37, P = 4.5e-37
 Identities = 83/254 (32%), Positives = 129/254 (50%)

Query:    34 PCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTLTGTPQGARGRAVYLSRMST 92
             PC  C + F  ++ LK H+  H G   Y CP C K+F           + +     R+ T
Sbjct:   176 PCQYCGKRFRQLQNLKFHITAHTGEKPYTCPHCPKSF---------DRKKKCEKHIRVHT 226

Query:    93 TLTRHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVR- 150
                   C QC R  A+  +LK HLK H G   Y C EC K+F  T  LR H ++H G R 
Sbjct:   227 GEKPFACQQCGRSLASKDLLKKHLKIHSGERPYTCQECGKSFTETERLRVHMRIHTGERP 286

Query:   151 YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGIT-YSCP 208
             Y C  C + ++ +  +  HV  H G + + C QC ++F C     +H  +H+G   ++C 
Sbjct:   287 YTCSQCGKSYTQKNCLDYHVRIHTGEKPYNCTQCGKSFKCRTSQIRHMNIHTGEKPFACV 346

Query:   209 SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCELCAR 266
              C KSF ++   R H+  H G +  TC +C K F+ + NLK H  +H + ++++C+ C +
Sbjct:   347 QCGKSFAQEFHLRNHVICHTGAKPFTCDQCGKSFTRKDNLKEHKTIHTNDKSFICDQCGK 406

Query:   267 QFTRVDHFNHHRRL 280
              FTR D+ + H ++
Sbjct:   407 GFTRKDYLSQHMKI 420

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-070705-202 si:ch73-138e16.3 "si:ch73-138e16.3" [Danio rerio (taxid:7955)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 82/261 (31%), Positives = 130/261 (49%)

Query:    33 HPCPQCSRDFATVKILKTHLKTH-EGIIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMS 91
             H C +C + F     LK HL+ H +   Y C EC K+F     G     +       ++ 
Sbjct:    91 HTCDRCDKTFLRAADLKIHLRVHTKEKPYSCSECGKSF-----GRQSSLKDH----QKIH 141

Query:    92 TTLTRHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVR 150
             T +  + C QC + F T  +LK H K H G+  + C EC KTF+    L+ H+ +H G +
Sbjct:   142 TGVKEYVCCQCEKTFITAGLLKQHQKIHTGVREFVCFECQKTFIRAEYLKRHQMIHTGEK 201

Query:   151 -YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGIT-YSC 207
              Y C  C + F    T+ AH   H G + + CDQC ++++   +L++H K+H+G   ++C
Sbjct:   202 PYRCSHCDKSFRQSGTLNAHERIHTGEKPYTCDQCLKSYTRWSHLQKHMKIHTGEKQHTC 261

Query:   208 PSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCA 265
               C KS   K   + H+++H G + +TC EC K       LK HM +H   + + C+ C 
Sbjct:   262 TECGKSLRSKQSLQFHMRIHTGEKPYTCTECGKSVRQSSALKIHMRIHTGEKPHKCDQCG 321

Query:   266 RQFTRVDHFNHHRRLQHDPEE 286
             + F    H  +H R+ H  E+
Sbjct:   322 KTFLIHSHLQNHLRV-HTKEK 341

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-110913-140 si:dkey-54i3.4 "si:dkey-54i3.4" [Danio rerio (taxid:7955)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 79/259 (30%), Positives = 130/259 (50%)

Query:    35 CPQCSRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTT 93
             C QC ++F     L  H++ H G  ++ C +C K+F S      Q  R   ++      T
Sbjct:    96 CTQCGKNFNQSSNLNQHMRIHTGEKLFTCTQCGKSF-SNSANLNQHMR---IHTGEKPFT 151

Query:    94 LTRHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVR-Y 151
                  C QC + F+    L  H++ H G   + C +C K+F  +S L  H ++H G + +
Sbjct:   152 -----CTQCGKSFSQSSNLNHHMRIHTGEKPFTCSQCGKSFSQSSSLNLHMRIHTGEKPF 206

Query:   152 ICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGIT-YSCPS 209
              C  C + FS  + +  H+ +H G +   C QC ++FS   YL QH ++H+G   ++C  
Sbjct:   207 TCTQCGKSFSQSSILNIHMRNHTGEKPFTCLQCGKSFSQSTYLNQHMRIHTGENLFTCTQ 266

Query:   210 CSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQ 267
             C KSF+      +H+++H G +  TC +C K FS   NL  HM +H   + + C  C + 
Sbjct:   267 CGKSFSNSANLNLHMRIHTGEKPFTCTQCGKSFSQSSNLNIHMRIHTGEKPFTCSQCGKS 326

Query:   268 FTRVDHFNHHRRLQHDPEE 286
             F++  + NHH R+ H  E+
Sbjct:   327 FSQSPYLNHHMRI-HTGEK 344

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
KOG2462|consensus	279		99.94
KOG2462|consensus	279		99.94
KOG1074|consensus	958		99.94
KOG3608|consensus	467		99.93
KOG3608|consensus	467		99.91
KOG1074|consensus	958		99.87
KOG3623|consensus	1007		99.85
KOG3623|consensus	1007		99.78
KOG3576|consensus	267		99.64
KOG3576|consensus	267		99.58
PLN03086	567	PRLI-interacting factor K; Provisional	99.35
PLN03086	567	PRLI-interacting factor K; Provisional	99.23
PHA00733	128	hypothetical protein	99.12
PHA02768	55	hypothetical protein; Provisional	99.02
KOG3993|consensus	500		98.95
PHA00733	128	hypothetical protein	98.93
PHA02768	55	hypothetical protein; Provisional	98.89
KOG3993|consensus	500		98.82
PHA00616	44	hypothetical protein	98.52
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.39
PHA00732	79	hypothetical protein	98.26
PHA00732	79	hypothetical protein	98.25
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.21
PHA00616	44	hypothetical protein	98.14
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.12
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.91
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.87
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.85
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.79
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.76
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.76
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.68
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.67
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.46
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.46
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.21
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.95
KOG2231|consensus	669		96.93
smart00355	26	ZnF_C2H2 zinc finger.	96.84
smart00355	26	ZnF_C2H2 zinc finger.	96.8
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.79
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.66
KOG2231|consensus	669		96.62
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.62
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.51
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.37
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.31
KOG1146|consensus	1406		96.25
KOG1146|consensus	1406		96.21
PRK04860	160	hypothetical protein; Provisional	95.34
PRK04860	160	hypothetical protein; Provisional	95.28
KOG2785|consensus	390		95.11
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	94.99
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.75
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.49
KOG2482|consensus	423		94.48
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.34
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.21
KOG2785|consensus	390		94.18
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	94.06
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	92.08
KOG2482|consensus	423		90.97
COG4049	65	Uncharacterized protein containing archaeal-type C	90.91
KOG4173|consensus	253		90.88
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	90.77
KOG2893|consensus	341		90.12
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	88.85
COG5048	467	FOG: Zn-finger [General function prediction only]	86.95
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	86.87
KOG2893|consensus	341		86.27
KOG2186|consensus	276		84.27
COG5048	467	FOG: Zn-finger [General function prediction only]	83.85
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	83.49
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	83.46
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	83.08
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	82.8
KOG2186|consensus	276		82.14
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	81.98
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	81.65
KOG4173|consensus	253		81.57

>KOG2462|consensus

Probab=99.94  E-value=4.2e-28  Score=186.19  Aligned_cols=127  Identities=28%  Similarity=0.694  Sum_probs=79.6

Q ss_pred             ccCCCCCcccCCHHHHHHHHHhhcC----CCcccCcchhccCCchHHHhHHhhcCCCceeCCCCccccCCHHHHHHHHHH
Q psy6546         151 YICHACPREFSSEATMKAHVASHNG----VQHACDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKL  226 (294)
Q Consensus       151 ~~C~~C~~~f~~~~~l~~H~~~~~~----~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~  226 (294)
                      |.|+.||+.+.+.+.|.+|.+.|-.    ..+.|++|++++.+...|..|+++|. -+++|.+||+.|.+..-|+.|+++
T Consensus       131 ~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~-l~c~C~iCGKaFSRPWLLQGHiRT  209 (279)
T KOG2462|consen  131 YKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT-LPCECGICGKAFSRPWLLQGHIRT  209 (279)
T ss_pred             eeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC-CCcccccccccccchHHhhccccc
Confidence            5555555555555555555555432    24566666666666666666666665 266666666666666666666666


Q ss_pred             hCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhhhh
Q psy6546         227 HQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNHHR  278 (294)
Q Consensus       227 h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~  278 (294)
                      |+|++ |.|+.|+++|.++++|+.|+++|. .+.|+|..|++.|..++.|.+|.
T Consensus       210 HTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~  263 (279)
T KOG2462|consen  210 HTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHS  263 (279)
T ss_pred             ccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhh
Confidence            66665 666666666666666666666664 56666666666666666666664

>KOG2462|consensus

Probab=99.94  E-value=2.5e-27  Score=181.90  Aligned_cols=137  Identities=28%  Similarity=0.677  Sum_probs=119.9

Q ss_pred             CCCCccCccchhccCCHHHHHHHHHHhCCcccCCccCccchhccccCCCCCCCccchhhcccCCCCCcccCCccCccccC
Q psy6546          29 TPTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSRDFAT  108 (294)
Q Consensus        29 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~  108 (294)
                      ....|+|+.||+.|++...|.+|.+.|-.      .                           ...+.+.|+.|++.|.+
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~------~---------------------------~s~ka~~C~~C~K~YvS  173 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRS------L---------------------------DSKKAFSCKYCGKVYVS  173 (279)
T ss_pred             cCCceeccccccccccccccchhhccccc------c---------------------------cccccccCCCCCceeee
Confidence            34569999999999999999999988731      0                           11456889999999999


Q ss_pred             hHHHHHHHhhccCcccCCcccccccCChHhHHHHHhhhCCCC-ccCCCCCcccCCHHHHHHHHHhhcCC-CcccCcchhc
Q psy6546         109 VKILKTHLKTHEGIIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGV-QHACDQCDRT  186 (294)
Q Consensus       109 ~~~l~~H~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~~~~~-~~~C~~C~~~  186 (294)
                      ...|..|+++|. .+.+|.+||+.|...+.|+.|++.|+|++ |.|+.|++.|.++++|+.||++|.+. +|.|..|+|.
T Consensus       174 mpALkMHirTH~-l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~Ks  252 (279)
T KOG2462|consen  174 MPALKMHIRTHT-LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKS  252 (279)
T ss_pred             hHHHhhHhhccC-CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhH
Confidence            999999999988 67999999999999999999999999988 99999999999999999999999885 8888888888


Q ss_pred             cCCchHHHhHHhh
Q psy6546         187 FSCMPYLRQHQKL  199 (294)
Q Consensus       187 f~~~~~l~~H~~~  199 (294)
                      |...+.|..|...
T Consensus       253 Fsl~SyLnKH~ES  265 (279)
T KOG2462|consen  253 FALKSYLNKHSES  265 (279)
T ss_pred             HHHHHHHHHhhhh
Confidence            8888888888654

>KOG1074|consensus

Probab=99.94  E-value=3.9e-28  Score=210.37  Aligned_cols=142  Identities=27%  Similarity=0.596  Sum_probs=128.6

Q ss_pred             ccCCCCCcccCCHHHHHHHHHhhcCC-CcccCcchhccCCchHHHhHHhhcCCC-----ceeCC---CCccccCCHHHHH
Q psy6546         151 YICHACPREFSSEATMKAHVASHNGV-QHACDQCDRTFSCMPYLRQHQKLHSGI-----TYSCP---SCSKSFNRKDRYR  221 (294)
Q Consensus       151 ~~C~~C~~~f~~~~~l~~H~~~~~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~~-----~~~C~---~C~~~f~~~~~l~  221 (294)
                      ..|-.|.+++.-.+.|+.|.++|+|+ ||+|.+|++.|..+.+|+.|+-.|..+     .+.|+   +|.+.|...-.|.
T Consensus       606 NqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~lp  685 (958)
T KOG1074|consen  606 NQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVTLP  685 (958)
T ss_pred             cceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccccccccccc
Confidence            67999999999999999999999998 999999999999999999999999775     58899   9999999999999


Q ss_pred             HHHHHhCC------------------------------------------------------------------------
Q psy6546         222 MHLKLHQG------------------------------------------------------------------------  229 (294)
Q Consensus       222 ~H~~~h~~------------------------------------------------------------------------  229 (294)
                      +|+++|.+                                                                        
T Consensus       686 QhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~~tp~~~e~~~~~  765 (958)
T KOG1074|consen  686 QHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEELDVTPPPPENSCGR  765 (958)
T ss_pred             ceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccccccccCCCcccccccc
Confidence            99888740                                                                        


Q ss_pred             --------------------------------------------------------------------------------
Q psy6546         230 --------------------------------------------------------------------------------  229 (294)
Q Consensus       230 --------------------------------------------------------------------------------  229 (294)
                                                                                                      
T Consensus       766 ~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~~~l~eg~~t~~  845 (958)
T KOG1074|consen  766 ELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQETSMLNEGLATKT  845 (958)
T ss_pred             ccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhccccccccccccccc
Confidence                                                                                            


Q ss_pred             --------------------------C------ccccccccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhh
Q psy6546         230 --------------------------V------RHTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNH  276 (294)
Q Consensus       230 --------------------------~------~~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~  276 (294)
                                                +      +..|..||+.|...++|..|+++|. ++||.|..|+++|+.+.+|+.
T Consensus       846 n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKv  925 (958)
T KOG1074|consen  846 NEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKV  925 (958)
T ss_pred             ccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhh
Confidence                                      0      1679999999999999999999997 999999999999999999999


Q ss_pred             hhhhccCccccccccc
Q psy6546         277 HRRLQHDPEEFEKVGA  292 (294)
Q Consensus       277 H~~~~h~~~~~~~~~~  292 (294)
                      ||.+|+-..+.--+++
T Consensus       926 HMgtH~w~q~~srrG~  941 (958)
T KOG1074|consen  926 HMGTHMWVQPPSRRGP  941 (958)
T ss_pred             hhccccccCCCccCCC
Confidence            9999998887755544

>KOG3608|consensus

Probab=99.93  E-value=5.5e-26  Score=179.17  Aligned_cols=232  Identities=22%  Similarity=0.495  Sum_probs=192.8

Q ss_pred             CCCCCCccCc--cchhccCCHHHHHHHHHHhCCcccCCccCccchhccccCCCCCCCccchhhcccCCCC---CcccCCc
Q psy6546          27 STTPTRHPCP--QCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTL---TRHPCPQ  101 (294)
Q Consensus        27 ~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~C~~  101 (294)
                      +.-+..|.|.  .|++.|.+...|..|+..|...   |   ...+                  ......+   .+-.+..
T Consensus       129 p~~g~~f~C~WedCe~~F~s~~ef~dHV~~H~l~---c---eyd~------------------~~~~~D~~pv~~C~W~~  184 (467)
T KOG3608|consen  129 PALGQNFRCGWEDCEREFVSIVEFQDHVVKHALF---C---EYDI------------------QKTPEDERPVTMCNWAM  184 (467)
T ss_pred             ccchhhhccChhhcCCcccCHHHHHHHHHHhhhh---h---hhhh------------------hhCCCCCCceeeccchh
Confidence            3345568886  4999999999999999887531   1   1110                  0011111   2234568


Q ss_pred             cCccccChHHHHHHHhhccCc-ccCCcccccccCChHhHHHHHhhhCCC---CccCCCCCcccCCHHHHHHHHHhhcCCC
Q psy6546         102 CSRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTSGLREHRKVHAGV---RYICHACPREFSSEATMKAHVASHNGVQ  177 (294)
Q Consensus       102 C~~~f~~~~~l~~H~~~~~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~~---~~~C~~C~~~f~~~~~l~~H~~~~~~~~  177 (294)
                      |-+.+.++..|..|++.|.++ ...|+.|+..|.+...|-.|++..+..   .|.|..|.+.|.++..|..|+..|-. -
T Consensus       185 Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn-~  263 (467)
T KOG3608|consen  185 CTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN-C  263 (467)
T ss_pred             hhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh-c
Confidence            999999999999999999986 789999999999999999999876653   39999999999999999999999877 7


Q ss_pred             cccCcchhccCCchHHHhHHhhcCC--CceeCCCCccccCCHHHHHHHHHHhCCCcccccc--ccccccCHHHHHHHHhh
Q psy6546         178 HACDQCDRTFSCMPYLRQHQKLHSG--ITYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKE--CSKEFSNEYNLKNHMVL  253 (294)
Q Consensus       178 ~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~--C~~~f~~~~~l~~H~~~  253 (294)
                      |.|+.|+......+.|..|++.-+.  +||+|+.|.+.|.+.+.|.+|+..|....|.|..  |.+.|.+..+|++|.+.
T Consensus       264 ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r~~~q~~~H~~e  343 (467)
T KOG3608|consen  264 YKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVRTYTQMRRHFLE  343 (467)
T ss_pred             ccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccceecCCCCCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999986655  5999999999999999999999999855599988  99999999999999766


Q ss_pred             hc----ccccccccccccccchhhhhhhhhhccC
Q psy6546         254 HD----VRAYVCELCARQFTRVDHFNHHRRLQHD  283 (294)
Q Consensus       254 h~----~~~~~C~~C~~~f~~~~~l~~H~~~~h~  283 (294)
                      ++    +-+|.|-.|++-|+.=-+|..|++..|+
T Consensus       344 vhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~  377 (467)
T KOG3608|consen  344 VHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHG  377 (467)
T ss_pred             hccCCCCCceeeecchhhhccchhHHHHHHHhhc
Confidence            63    5689999999999999999999866554

>KOG3608|consensus

Probab=99.91  E-value=1.2e-23  Score=166.03  Aligned_cols=183  Identities=23%  Similarity=0.506  Sum_probs=165.5

Q ss_pred             CCccCccccChHHHHHHHhhccC-------------c-ccCCc--ccccccCChHhHHHHHhhhCCCC-ccCCCCCcccC
Q psy6546          99 CPQCSRDFATVKILKTHLKTHEG-------------I-IYPCP--ECDKTFLSTSGLREHRKVHAGVR-YICHACPREFS  161 (294)
Q Consensus        99 C~~C~~~f~~~~~l~~H~~~~~~-------------~-~~~C~--~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~  161 (294)
                      +..|++.|.+...+..|+..|.-             + .+.|.  .|.+.|.++..|+.|++.|.+++ ..|+.||..|.
T Consensus       139 WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~  218 (467)
T KOG3608|consen  139 WEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFR  218 (467)
T ss_pred             hhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhc
Confidence            36899999999999999887731             1 24555  48999999999999999999999 89999999999


Q ss_pred             CHHHHHHHHHhhcC---CCcccCcchhccCCchHHHhHHhhcCCCceeCCCCccccCCHHHHHHHHHHh-CCCc-ccccc
Q psy6546         162 SEATMKAHVASHNG---VQHACDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKLH-QGVR-HTCKE  236 (294)
Q Consensus       162 ~~~~l~~H~~~~~~---~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h-~~~~-~~C~~  236 (294)
                      ++..|..|.+..+.   .+|.|..|.+.|..+..|..|+..|-. -|+|+.|.......++|..|++.- ...+ |+|..
T Consensus       219 ~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn-~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~  297 (467)
T KOG3608|consen  219 TKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN-CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDE  297 (467)
T ss_pred             cccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh-cccccccccCCCChHHHHHHHHhhhccCCCccccc
Confidence            99999999987765   389999999999999999999999876 899999999999999999999874 4433 99999


Q ss_pred             ccccccCHHHHHHHHhhhccccccccc--ccccccchhhhhhhhhhcc
Q psy6546         237 CSKEFSNEYNLKNHMVLHDVRAYVCEL--CARQFTRVDHFNHHRRLQH  282 (294)
Q Consensus       237 C~~~f~~~~~l~~H~~~h~~~~~~C~~--C~~~f~~~~~l~~H~~~~h  282 (294)
                      |.+.|...+.|.+|+.+|.+-.|+|..  |.++|.+..+|.+|++.+|
T Consensus       298 Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r~~~q~~~H~~evh  345 (467)
T KOG3608|consen  298 CDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVRTYTQMRRHFLEVH  345 (467)
T ss_pred             hhhhhccHHHHHHHHHhccccceecCCCCCcHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999976  9999999999999999988

>KOG1074|consensus

Probab=99.87  E-value=1.8e-22  Score=175.60  Aligned_cols=161  Identities=28%  Similarity=0.590  Sum_probs=136.0

Q ss_pred             CcccCCccCccccChHHHHHHHhhccCc-ccCCcccccccCChHhHHHHHhhhCCCC-----ccCC---CCCcccCCHHH
Q psy6546          95 TRHPCPQCSRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTSGLREHRKVHAGVR-----YICH---ACPREFSSEAT  165 (294)
Q Consensus        95 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~~~-----~~C~---~C~~~f~~~~~  165 (294)
                      .+-+|-.|.++..-+..|+.|.++|.+. ||+|.+|++.|.++.+|+.||..|....     +.|+   +|-+.|...-.
T Consensus       604 dPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~  683 (958)
T KOG1074|consen  604 DPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVT  683 (958)
T ss_pred             CccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccccccccc
Confidence            4457999999999999999999999996 9999999999999999999999887643     8899   99999999999


Q ss_pred             HHHHHHhhcCC--------------CcccCcchhccCCchHHHhHHhhc-------------------------------
Q psy6546         166 MKAHVASHNGV--------------QHACDQCDRTFSCMPYLRQHQKLH-------------------------------  200 (294)
Q Consensus       166 l~~H~~~~~~~--------------~~~C~~C~~~f~~~~~l~~H~~~h-------------------------------  200 (294)
                      |..|+++|.+.              .-.|..|.+.|.....+..++-.+                               
T Consensus       684 lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~~tp~~~e~~~  763 (958)
T KOG1074|consen  684 LPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEELDVTPPPPENSC  763 (958)
T ss_pred             ccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccccccccCCCcccccc
Confidence            99999998732              135777777776555555443322                               


Q ss_pred             --------------------------------------------------------------------------------
Q psy6546         201 --------------------------------------------------------------------------------  200 (294)
Q Consensus       201 --------------------------------------------------------------------------------  200 (294)
                                                                                                      
T Consensus       764 ~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~~~l~eg~~t  843 (958)
T KOG1074|consen  764 GRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQETSMLNEGLAT  843 (958)
T ss_pred             ccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhccccccccccccc
Confidence                                                                                            


Q ss_pred             --------------------------CCC------ceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHH
Q psy6546         201 --------------------------SGI------TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNL  247 (294)
Q Consensus       201 --------------------------~~~------~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l  247 (294)
                                                .++      ...|.+|++.|.++++|+.|+++|++++ |.|..|++.|...++|
T Consensus       844 ~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnL  923 (958)
T KOG1074|consen  844 KTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNL  923 (958)
T ss_pred             ccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhh
Confidence                                      000      1669999999999999999999999988 9999999999999999


Q ss_pred             HHHHhhhc
Q psy6546         248 KNHMVLHD  255 (294)
Q Consensus       248 ~~H~~~h~  255 (294)
                      +.|+.+|.
T Consensus       924 KvHMgtH~  931 (958)
T KOG1074|consen  924 KVHMGTHM  931 (958)
T ss_pred             hhhhcccc
Confidence            99999995

>KOG3623|consensus

Probab=99.85  E-value=1.2e-21  Score=167.99  Aligned_cols=116  Identities=26%  Similarity=0.517  Sum_probs=89.2

Q ss_pred             CCCccCccchhccCCHHHHHHHHHHhCCc---ccCCccCccchhccccCC----CCCCCccchhhcccCCCCCcccCCcc
Q psy6546          30 PTRHPCPQCSRDFATVKILKTHLKTHEGI---IYPCPECDKTFLSTLTGT----PQGARGRAVYLSRMSTTLTRHPCPQC  102 (294)
Q Consensus        30 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~---~~~c~~c~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~C~~C  102 (294)
                      .....|+.|.+.+.....|+.|++.-+..   -+.|..|...|..+....    .+..................|+|..|
T Consensus       208 sqlltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtEC  287 (1007)
T KOG3623|consen  208 SQLLTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTEC  287 (1007)
T ss_pred             hhhhcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhcccccccc
Confidence            44689999999999999999999865443   688999999997665211    11111111111222234678999999


Q ss_pred             CccccChHHHHHHHhhccCc-ccCCcccccccCChHhHHHHHhh
Q psy6546         103 SRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTSGLREHRKV  145 (294)
Q Consensus       103 ~~~f~~~~~l~~H~~~~~~~-~~~C~~C~~~f~~~~~l~~H~~~  145 (294)
                      +|.|+-+-.|+.|+++|.|. ||.|+.|++.|.....+..||..
T Consensus       288 gKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  288 GKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             chhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccc
Confidence            99999999999999999995 99999999999999998888853

>KOG3623|consensus

Probab=99.78  E-value=3.2e-19  Score=153.22  Aligned_cols=102  Identities=26%  Similarity=0.594  Sum_probs=87.6

Q ss_pred             ccCCccCccccChHHHHHHHhhccCc---ccCCcccccccCChHhHHHHHhhhCCC--------------CccCCCCCcc
Q psy6546          97 HPCPQCSRDFATVKILKTHLKTHEGI---IYPCPECDKTFLSTSGLREHRKVHAGV--------------RYICHACPRE  159 (294)
Q Consensus        97 ~~C~~C~~~f~~~~~l~~H~~~~~~~---~~~C~~C~~~f~~~~~l~~H~~~h~~~--------------~~~C~~C~~~  159 (294)
                      ..|++|.+.+....+|..|++.-+.+   .|.|..|.+.|-.+..|.+||..|...              +|+|..||+.
T Consensus       211 ltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKA  290 (1007)
T KOG3623|consen  211 LTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKA  290 (1007)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchh
Confidence            46999999999999999998877654   688999999999999999999887421              3999999999


Q ss_pred             cCCHHHHHHHHHhhcCC-CcccCcchhccCCchHHHhHHh
Q psy6546         160 FSSEATMKAHVASHNGV-QHACDQCDRTFSCMPYLRQHQK  198 (294)
Q Consensus       160 f~~~~~l~~H~~~~~~~-~~~C~~C~~~f~~~~~l~~H~~  198 (294)
                      |+.+..|+.|+++|.|+ ||.|+.|.+.|..+..+..|+.
T Consensus       291 FKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  291 FKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             hhhHHHHHhhheeecCCCCcCCcccccccccCCccccccc
Confidence            99999999999999997 8999999999988888888854

>KOG3576|consensus

Probab=99.64  E-value=3.5e-17  Score=120.02  Aligned_cols=77  Identities=29%  Similarity=0.719  Sum_probs=45.4

Q ss_pred             ccCCCCCcccCCHHHHHHHHHhhcCC-CcccCcchhccCCchHHHhHHhhcCCC-ceeCCCCccccCCHHHHHHHHHHh
Q psy6546         151 YICHACPREFSSEATMKAHVASHNGV-QHACDQCDRTFSCMPYLRQHQKLHSGI-TYSCPSCSKSFNRKDRYRMHLKLH  227 (294)
Q Consensus       151 ~~C~~C~~~f~~~~~l~~H~~~~~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~h  227 (294)
                      |.|.+|++.|.-...|.+|++-|... .|-|..||+.|...-+|++|.++|++. ||+|..|++.|+..-.|..|++.-
T Consensus       118 ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kv  196 (267)
T KOG3576|consen  118 FTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKV  196 (267)
T ss_pred             eeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHH
Confidence            66666666666555566666655553 555666666666666666666666553 566666666666655566665433

>KOG3576|consensus

Probab=99.58  E-value=9e-16  Score=112.71  Aligned_cols=106  Identities=32%  Similarity=0.649  Sum_probs=57.9

Q ss_pred             cCCcccccccCChHhHHHHHhhhCCCC-ccCCCCCcccCCHHHHHHHHHhhcCC-CcccCcchhccCCchHHHhHHhhcC
Q psy6546         124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGV-QHACDQCDRTFSCMPYLRQHQKLHS  201 (294)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~~~~~-~~~C~~C~~~f~~~~~l~~H~~~h~  201 (294)
                      |.|.+|++.|.-..-|.+|++-|...+ +.|..||+.|.+.-+|.+|+++|+|. ||.|..|++.|...-.|..|.+.-+
T Consensus       118 ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvh  197 (267)
T KOG3576|consen  118 FTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVH  197 (267)
T ss_pred             eeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHc
Confidence            445555555555555555555554433 55555555555555555555555554 5555555555555555555543222


Q ss_pred             C------------CceeCCCCccccCCHHHHHHHHHHhCC
Q psy6546         202 G------------ITYSCPSCSKSFNRKDRYRMHLKLHQG  229 (294)
Q Consensus       202 ~------------~~~~C~~C~~~f~~~~~l~~H~~~h~~  229 (294)
                      +            +.|.|..||+.-.....+..|++.|+.
T Consensus       198 gv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp  237 (267)
T KOG3576|consen  198 GVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP  237 (267)
T ss_pred             CchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence            2            357777777777666667777766554

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.35  E-value=2e-12  Score=112.23  Aligned_cols=145  Identities=19%  Similarity=0.448  Sum_probs=107.3

Q ss_pred             cCCcccccccCChHhHHHHHhhhCCCCccCCC--CCcccCCHHHHHHHHHhhcCCCcccCcchhccCCchHHHhHHhhcC
Q psy6546         124 YPCPECDKTFLSTSGLREHRKVHAGVRYICHA--CPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHS  201 (294)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  201 (294)
                      -.|+.|... ....+|..|..........|+.  |+..|.. ..+..|        +.|+.|++.|. ...|..|+..++
T Consensus       408 V~C~NC~~~-i~l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r-~el~~H--------~~C~~Cgk~f~-~s~LekH~~~~H  476 (567)
T PLN03086        408 VECRNCKHY-IPSRSIALHEAYCSRHNVVCPHDGCGIVLRV-EEAKNH--------VHCEKCGQAFQ-QGEMEKHMKVFH  476 (567)
T ss_pred             EECCCCCCc-cchhHHHHHHhhCCCcceeCCcccccceeec-cccccC--------ccCCCCCCccc-hHHHHHHHHhcC
Confidence            457777665 3345666777776666677874  8888842 233333        48999988885 577889988875


Q ss_pred             CCceeCCCCccccCCHHHHHHHHHHhCCCc-ccccccccccc----------CHHHHHHHHhhhcccccccccccccccc
Q psy6546         202 GITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFS----------NEYNLKNHMVLHDVRAYVCELCARQFTR  270 (294)
Q Consensus       202 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~----------~~~~l~~H~~~h~~~~~~C~~C~~~f~~  270 (294)
                       +++.|+ |++.+ .+..|..|+.+|-+.+ +.|..|+..|.          ....|..|......+++.|..|++.+..
T Consensus       477 -kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrl  553 (567)
T PLN03086        477 -EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVML  553 (567)
T ss_pred             -CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeeee
Confidence             688998 98654 6688999988887766 89999998884          2457889988888999999999998876


Q ss_pred             hhhhhhhhhhccC
Q psy6546         271 VDHFNHHRRLQHD  283 (294)
Q Consensus       271 ~~~l~~H~~~~h~  283 (294)
                      + .|..|+..-|.
T Consensus       554 r-dm~~H~~~~h~  565 (567)
T PLN03086        554 K-EMDIHQIAVHQ  565 (567)
T ss_pred             h-hHHHHHHHhhc
Confidence            5 47778765543

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.23  E-value=1.2e-10  Score=101.47  Aligned_cols=154  Identities=17%  Similarity=0.376  Sum_probs=78.2

Q ss_pred             CCCccCccchhccCCHHHHHHHHHHhCCcccCCcc--CccchhccccCCCCCCCccchhhcccCCCCCcccCCccCcccc
Q psy6546          30 PTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPE--CDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSRDFA  107 (294)
Q Consensus        30 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~c~~--c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~  107 (294)
                      ...-.|+.|.+... ...|..|.....-....|+.  |+..|....                   ....+.|+.|++.|.
T Consensus       405 ~~~V~C~NC~~~i~-l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~e-------------------l~~H~~C~~Cgk~f~  464 (567)
T PLN03086        405 VDTVECRNCKHYIP-SRSIALHEAYCSRHNVVCPHDGCGIVLRVEE-------------------AKNHVHCEKCGQAFQ  464 (567)
T ss_pred             CCeEECCCCCCccc-hhHHHHHHhhCCCcceeCCcccccceeeccc-------------------cccCccCCCCCCccc
Confidence            34457999999887 44555777554444555653  655552211                   112235666666664


Q ss_pred             ChHHHHHHHhhccCcccCCcccccccCChHhHHHHHhhhCCCC-ccCCCCCcccCCHHHHHHHHHhhcCCCcccCcchhc
Q psy6546         108 TVKILKTHLKTHEGIIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQHACDQCDRT  186 (294)
Q Consensus       108 ~~~~l~~H~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~~~~~~~~C~~C~~~  186 (294)
                       ...|..|++.++ .++.|+ |++.+ ....|..|+..|.+.+ +.|..|++.+......         ..+.       
T Consensus       465 -~s~LekH~~~~H-kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~---------~d~~-------  524 (567)
T PLN03086        465 -QGEMEKHMKVFH-EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSA---------MDVR-------  524 (567)
T ss_pred             -hHHHHHHHHhcC-CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccc---------cchh-------
Confidence             455666666553 455665 65433 3455555555554444 5555555555310000         0000       


Q ss_pred             cCCchHHHhHHhhcCCCceeCCCCccccCCHHHHHHHHH
Q psy6546         187 FSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLK  225 (294)
Q Consensus       187 f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~  225 (294)
                       ...+.|..|...+..+++.|..||+.+..+ .+..|+.
T Consensus       525 -d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrlr-dm~~H~~  561 (567)
T PLN03086        525 -DRLRGMSEHESICGSRTAPCDSCGRSVMLK-EMDIHQI  561 (567)
T ss_pred             -hhhhhHHHHHHhcCCcceEccccCCeeeeh-hHHHHHH
Confidence             012355566655555566666666655443 2445543

>PHA00733 hypothetical protein

Probab=99.12  E-value=3.7e-11  Score=85.38  Aligned_cols=79  Identities=19%  Similarity=0.286  Sum_probs=47.5

Q ss_pred             ceeCCCCccccCCHHHH------HHHHHHhCCCccccccccccccCHHHHHHHHhhhcccccccccccccccchhhhhhh
Q psy6546         204 TYSCPSCSKSFNRKDRY------RMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVLHDVRAYVCELCARQFTRVDHFNHH  277 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l------~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H  277 (294)
                      ++.|.+|...|.....|      .+|+..+...+|.|..|++.|.....|..|++.| ..+|.|+.|++.|.....|..|
T Consensus        40 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~~CgK~F~~~~sL~~H  118 (128)
T PHA00733         40 RLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCPVCGKEFRNTDSTLDH  118 (128)
T ss_pred             hHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC-CcCccCCCCCCccCCHHHHHHH
Confidence            44444444444443333      3333333444477777777777777777776655 3457777777777777777777


Q ss_pred             hhhccC
Q psy6546         278 RRLQHD  283 (294)
Q Consensus       278 ~~~~h~  283 (294)
                      +...|+
T Consensus       119 ~~~~h~  124 (128)
T PHA00733        119 VCKKHN  124 (128)
T ss_pred             HHHhcC
Confidence            766665

>PHA02768 hypothetical protein; Provisional

Probab=99.02  E-value=1.5e-10  Score=67.53  Aligned_cols=43  Identities=16%  Similarity=0.346  Sum_probs=30.7

Q ss_pred             cccccccccccCHHHHHHHHhhhcccccccccccccccchhhhh
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHDVRAYVCELCARQFTRVDHFN  275 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~  275 (294)
                      |.|+.||+.|+....|..|+++|. ++|+|..|++.|.+.++|.
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~-k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN-TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC-CcccCCcccceecccceeE
Confidence            667777777777777777777776 5777777777777666554

>KOG3993|consensus

Probab=98.95  E-value=1.1e-10  Score=95.38  Aligned_cols=160  Identities=21%  Similarity=0.281  Sum_probs=103.9

Q ss_pred             cCCcccccccCChHhHHHHHhhhCCCC-ccCCCCCcccCCHHHHHHHHHhhcCCCccc--C-cchhccCCchHHHhHHh-
Q psy6546         124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQHAC--D-QCDRTFSCMPYLRQHQK-  198 (294)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~~~~~~~~C--~-~C~~~f~~~~~l~~H~~-  198 (294)
                      |.|+.|...|.+...|.+|.-...-.. |+|+.|+++|.-..+|..|.+.|..++-.-  . .=.+.-.....+..... 
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~r  347 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAER  347 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccc
Confidence            789999988988888888887666533 899999999999999999988887642111  0 00000000011111110 


Q ss_pred             h---cCCCceeCCCCccccCCHHHHHHHHHHhCCCc--------------------------------------------
Q psy6546         199 L---HSGITYSCPSCSKSFNRKDRYRMHLKLHQGVR--------------------------------------------  231 (294)
Q Consensus       199 ~---h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~--------------------------------------------  231 (294)
                      .   .....|.|.+|++.|.+...|++|+.+|+...                                            
T Consensus       348 sg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~s  427 (500)
T KOG3993|consen  348 SGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAGS  427 (500)
T ss_pred             cCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeecc
Confidence            0   11126999999999999999999988875210                                            


Q ss_pred             ---cccccccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhhhhhhccC
Q psy6546         232 ---HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHD  283 (294)
Q Consensus       232 ---~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~  283 (294)
                         ..|+.|+..+.++..---+.+.-. ...|-|.+|.-.|.....|.+|+..-|.
T Consensus       428 ael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hp  483 (500)
T KOG3993|consen  428 AELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHP  483 (500)
T ss_pred             ccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcCh
Confidence               235555555544433333332222 4458899999999999999999876665

>PHA00733 hypothetical protein

Probab=98.93  E-value=1.2e-09  Score=77.71  Aligned_cols=60  Identities=25%  Similarity=0.389  Sum_probs=32.1

Q ss_pred             HHHHhhcCCCcccCcchhccCCchHHHhHHhhcCCCceeCCCCccccCCHHHHHHHHHHhC
Q psy6546         168 AHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQ  228 (294)
Q Consensus       168 ~H~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~  228 (294)
                      .|+..+...+|.|+.|++.|.....|..|++.+ ..++.|..|++.|.....|..|+...+
T Consensus        64 ~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~~CgK~F~~~~sL~~H~~~~h  123 (128)
T PHA00733         64 KLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCPVCGKEFRNTDSTLDHVCKKH  123 (128)
T ss_pred             hhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC-CcCccCCCCCCccCCHHHHHHHHHHhc
Confidence            333333334555666666666555555555544 234556666666666666666555433

>PHA02768 hypothetical protein; Provisional

Probab=98.89  E-value=8.2e-10  Score=64.44  Aligned_cols=43  Identities=19%  Similarity=0.461  Sum_probs=30.8

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCCccccccccccccCHHHH
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNL  247 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l  247 (294)
                      .|.|+.||+.|...++|..|+++|+ .+|+|..|++.|...+.|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~-k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN-TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC-CcccCCcccceeccccee
Confidence            4677777777777777777777777 457777777777766554

>KOG3993|consensus

Probab=98.82  E-value=3.3e-10  Score=92.77  Aligned_cols=163  Identities=21%  Similarity=0.338  Sum_probs=103.7

Q ss_pred             CCCCCcccCCccCccccChHHHHHHHhhccC-cccCCcccccccCChHhHHHHHhhhCCC--------------------
Q psy6546          91 STTLTRHPCPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGV--------------------  149 (294)
Q Consensus        91 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~--------------------  149 (294)
                      .....-|.|.+|...|.+.-.|.+|.-...- .-|+|++|+++|+...+|..|.++|...                    
T Consensus       262 ~n~iGdyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae  341 (500)
T KOG3993|consen  262 PNVIGDYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAE  341 (500)
T ss_pred             cccHHHHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhh
Confidence            3344668999999999999999999654433 2699999999999999999999998432                    


Q ss_pred             --------------CccCCCCCcccCCHHHHHHHHHhhcCCC------------------cccCcchhccCCchHHHhHH
Q psy6546         150 --------------RYICHACPREFSSEATMKAHVASHNGVQ------------------HACDQCDRTFSCMPYLRQHQ  197 (294)
Q Consensus       150 --------------~~~C~~C~~~f~~~~~l~~H~~~~~~~~------------------~~C~~C~~~f~~~~~l~~H~  197 (294)
                                    .|.|..|++.|.+..-|+.|+.+|....                  +.+..+.-.+.....--.+.
T Consensus       342 ~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~v  421 (500)
T KOG3993|consen  342 VQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEV  421 (500)
T ss_pred             hhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccce
Confidence                          1677777777777777777777665421                  12233322221111111111


Q ss_pred             hhcCC--CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHHHHHhh
Q psy6546         198 KLHSG--ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVL  253 (294)
Q Consensus       198 ~~h~~--~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~  253 (294)
                      ..+.+  .-..|+.||-.+.++..--.+.+.-.... |.|.+|...|.+...|.+|+..
T Consensus       422 l~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~  480 (500)
T KOG3993|consen  422 LYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINK  480 (500)
T ss_pred             eeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhh
Confidence            11111  12446777766655543333322222222 8899999999999999998643

>PHA00616 hypothetical protein

Probab=98.52  E-value=2.8e-08  Score=55.13  Aligned_cols=32  Identities=19%  Similarity=0.353  Sum_probs=24.1

Q ss_pred             ccccccccccccchhhhhhhhhhccCcccccc
Q psy6546         258 AYVCELCARQFTRVDHFNHHRRLQHDPEEFEK  289 (294)
Q Consensus       258 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  289 (294)
                      ||+|+.||+.|.++++|..|++.||+++++.+
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~   32 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTL   32 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccce
Confidence            57777777777777777777777777777654

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.39  E-value=1.9e-07  Score=46.46  Aligned_cols=24  Identities=38%  Similarity=0.908  Sum_probs=16.1

Q ss_pred             HHHHHHhhhc-cccccccccccccc
Q psy6546         246 NLKNHMVLHD-VRAYVCELCARQFT  269 (294)
Q Consensus       246 ~l~~H~~~h~-~~~~~C~~C~~~f~  269 (294)
                      +|..|+++|. ++||.|+.|++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            3666777775 66777777777665

...

>PHA00732 hypothetical protein

Probab=98.26  E-value=7.1e-07  Score=57.47  Aligned_cols=47  Identities=21%  Similarity=0.475  Sum_probs=34.1

Q ss_pred             ceeCCCCccccCCHHHHHHHHHH-hCCCccccccccccccCHHHHHHHHhhhc
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKL-HQGVRHTCKECSKEFSNEYNLKNHMVLHD  255 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~C~~C~~~f~~~~~l~~H~~~h~  255 (294)
                      ||.|..|++.|.+.+.|..|++. |.+  +.|..|++.|.   .|..|.+.+.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~--~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL--TKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC--CccCCCCCEeC---ChhhhhcccC
Confidence            56788888888888888888874 543  57888888887   4677765553

>PHA00732 hypothetical protein

Probab=98.25  E-value=8e-07  Score=57.24  Aligned_cols=43  Identities=33%  Similarity=0.649  Sum_probs=21.8

Q ss_pred             cccCcchhccCCchHHHhHHhh-cCCCceeCCCCccccCCHHHHHHHHH
Q psy6546         178 HACDQCDRTFSCMPYLRQHQKL-HSGITYSCPSCSKSFNRKDRYRMHLK  225 (294)
Q Consensus       178 ~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~C~~C~~~f~~~~~l~~H~~  225 (294)
                      |.|++|++.|.....|..|++. |.  ++.|+.|++.|.   .|..|.+
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~--~~~C~~CgKsF~---~l~~H~~   45 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHT--LTKCPVCNKSYR---RLNQHFY   45 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccC--CCccCCCCCEeC---Chhhhhc
Confidence            4555555555555555555543 32  235555555554   2444543

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.21  E-value=1.2e-06  Score=43.60  Aligned_cols=24  Identities=38%  Similarity=0.798  Sum_probs=15.0

Q ss_pred             HHHHHHHHhCCCc-ccccccccccc
Q psy6546         219 RYRMHLKLHQGVR-HTCKECSKEFS  242 (294)
Q Consensus       219 ~l~~H~~~h~~~~-~~C~~C~~~f~  242 (294)
                      +|.+|+++|++++ |.|+.|++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            3566666666655 66666666664

...

>PHA00616 hypothetical protein

Probab=98.14  E-value=1.2e-06  Score=48.62  Aligned_cols=27  Identities=26%  Similarity=0.450  Sum_probs=13.9

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      ||+|+.||+.|..++.|..|++.|++.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~   27 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQ   27 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCC
Confidence            345555555555555555555554444

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.12  E-value=3.1e-06  Score=50.57  Aligned_cols=49  Identities=33%  Similarity=0.541  Sum_probs=28.8

Q ss_pred             cccccccccccCHHHHHHHHhh-hc--ccccccccccccccchhhhhhhhhhccC
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVL-HD--VRAYVCELCARQFTRVDHFNHHRRLQHD  283 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~-h~--~~~~~C~~C~~~f~~~~~l~~H~~~~h~  283 (294)
                      |.|+.|++ -.+...|..|... |.  .+.+.|++|...++  .+|..|++.+|+
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            56666666 3445566666433 32  34567777766544  367777766653

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.91  E-value=1.1e-05  Score=38.94  Aligned_cols=22  Identities=41%  Similarity=0.976  Sum_probs=11.6

Q ss_pred             eeCCCCccccCCHHHHHHHHHH
Q psy6546         205 YSCPSCSKSFNRKDRYRMHLKL  226 (294)
Q Consensus       205 ~~C~~C~~~f~~~~~l~~H~~~  226 (294)
                      |.|+.|++.|.+...|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            3455555555555555555544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.87  E-value=5.5e-06  Score=56.80  Aligned_cols=71  Identities=23%  Similarity=0.416  Sum_probs=14.0

Q ss_pred             CCCCccccCCHHHHHHHHHHhCCCccccccccccccCHHHHHHHHhhhcccccccccccccccchhhhhhhhhh
Q psy6546         207 CPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVLHDVRAYVCELCARQFTRVDHFNHHRRL  280 (294)
Q Consensus       207 C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~  280 (294)
                      |..|+..|.+...|..|+...++....   ....+.....+..+.+.--...+.|.+|++.|.+...|..|++.
T Consensus         2 C~~C~~~f~~~~~l~~H~~~~H~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen    2 CLFCDESFSSVDDLLQHMKKKHGFDIP---DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRS   72 (100)
T ss_dssp             --------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccc---cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcC
Confidence            556666666666666666554443211   11112223333333222222346666666666666666666654

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.85  E-value=1.1e-05  Score=38.82  Aligned_cols=22  Identities=27%  Similarity=0.807  Sum_probs=11.7

Q ss_pred             cccccccccccchhhhhhhhhh
Q psy6546         259 YVCELCARQFTRVDHFNHHRRL  280 (294)
Q Consensus       259 ~~C~~C~~~f~~~~~l~~H~~~  280 (294)
                      |+|++|++.|.++.+|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4455555555555555555544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.79  E-value=4.7e-05  Score=45.46  Aligned_cols=46  Identities=26%  Similarity=0.473  Sum_probs=23.8

Q ss_pred             eeCCCCccccCCHHHHHHHHHH-hCCCc--cccccccccccCHHHHHHHHhh
Q psy6546         205 YSCPSCSKSFNRKDRYRMHLKL-HQGVR--HTCKECSKEFSNEYNLKNHMVL  253 (294)
Q Consensus       205 ~~C~~C~~~f~~~~~l~~H~~~-h~~~~--~~C~~C~~~f~~~~~l~~H~~~  253 (294)
                      |.|++|++ -.+...|..|... |...+  +.|++|...+.  ..|..|+..
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~   51 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNS   51 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHH
Confidence            55666666 3444556666544 33222  56666655433  255566543

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.76  E-value=2.4e-05  Score=53.60  Aligned_cols=72  Identities=19%  Similarity=0.425  Sum_probs=16.3

Q ss_pred             CCCCCcccCCHHHHHHHHHhhcCCCcccCcchhccCCchHHHhHHhhcCCCceeCCCCccccCCHHHHHHHHHHh
Q psy6546         153 CHACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKLH  227 (294)
Q Consensus       153 C~~C~~~f~~~~~l~~H~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h  227 (294)
                      |..|+..|.....|..|+...++....   ....+.....+..+.+.-....+.|..|++.|.+...|..|++.+
T Consensus         2 C~~C~~~f~~~~~l~~H~~~~H~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    2 CLFCDESFSSVDDLLQHMKKKHGFDIP---DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             --------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccc---cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            556666666666666666554443211   001111222222232222222567777777777777777777653

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.76  E-value=9.9e-06  Score=39.43  Aligned_cols=24  Identities=25%  Similarity=0.784  Sum_probs=12.5

Q ss_pred             cccccccccccchhhhhhhhhhcc
Q psy6546         259 YVCELCARQFTRVDHFNHHRRLQH  282 (294)
Q Consensus       259 ~~C~~C~~~f~~~~~l~~H~~~~h  282 (294)
                      |+|++|++.|.+...|..|++++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            455556666665566665555544

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.68  E-value=1.8e-05  Score=39.79  Aligned_cols=26  Identities=19%  Similarity=0.690  Sum_probs=19.8

Q ss_pred             ccccccccccccchhhhhhhhhhccC
Q psy6546         258 AYVCELCARQFTRVDHFNHHRRLQHD  283 (294)
Q Consensus       258 ~~~C~~C~~~f~~~~~l~~H~~~~h~  283 (294)
                      +|.|..|++.|.....|..|++.|+.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            57788888888888888888777654

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.67  E-value=5.6e-05  Score=36.66  Aligned_cols=23  Identities=43%  Similarity=1.028  Sum_probs=12.7

Q ss_pred             eeCCCCccccCCHHHHHHHHHHh
Q psy6546         205 YSCPSCSKSFNRKDRYRMHLKLH  227 (294)
Q Consensus       205 ~~C~~C~~~f~~~~~l~~H~~~h  227 (294)
                      |.|++|++.|.+...|..|+..|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            45666666666666666666554

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.46  E-value=7.5e-05  Score=37.49  Aligned_cols=24  Identities=29%  Similarity=0.718  Sum_probs=13.5

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHh
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLH  227 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h  227 (294)
                      +|.|..|++.|.+...|..|++.|
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            355555555555555555555544

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.46  E-value=6.1e-05  Score=60.18  Aligned_cols=72  Identities=17%  Similarity=0.304  Sum_probs=48.4

Q ss_pred             CCCCCccCcc--chhccCCHHHHHHHHHHhCCcccCCccCccchhccccCCCCCCCccchhhcccCCCCCcccCCccCcc
Q psy6546          28 TTPTRHPCPQ--CSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSRD  105 (294)
Q Consensus        28 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~  105 (294)
                      .+.+||+|++  |.+.|..+..|+-|+.--+..        .+.....         .......+....+||+|++|+|.
T Consensus       345 ~d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~--------~~~~~~p---------~p~~~~~F~~~~KPYrCevC~KR  407 (423)
T COG5189         345 KDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQN--------QKLHENP---------SPEKMNIFSAKDKPYRCEVCDKR  407 (423)
T ss_pred             ecCceecCCCCCchhhhccccchhhhhhccccC--------cccCCCC---------CccccccccccCCceeccccchh
Confidence            3469999997  999999999999999743321        1110000         11111222345689999999999


Q ss_pred             ccChHHHHHHH
Q psy6546         106 FATVKILKTHL  116 (294)
Q Consensus       106 f~~~~~l~~H~  116 (294)
                      |+....|+.|.
T Consensus       408 YKNlNGLKYHr  418 (423)
T COG5189         408 YKNLNGLKYHR  418 (423)
T ss_pred             hccCccceecc
Confidence            99888887774

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.21  E-value=0.00011  Score=35.69  Aligned_cols=24  Identities=21%  Similarity=0.552  Sum_probs=15.6

Q ss_pred             cccccccccccchhhhhhhhhhccC
Q psy6546         259 YVCELCARQFTRVDHFNHHRRLQHD  283 (294)
Q Consensus       259 ~~C~~C~~~f~~~~~l~~H~~~~h~  283 (294)
                      |+|+.|++..+ ...|..|++.+|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            56777777776 6677777777664

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.95  E-value=0.00022  Score=40.52  Aligned_cols=39  Identities=10%  Similarity=0.284  Sum_probs=22.3

Q ss_pred             HHHHhhhc--ccccccccccccccchhhhhhhhhhccCccc
Q psy6546         248 KNHMVLHD--VRAYVCELCARQFTRVDHFNHHRRLQHDPEE  286 (294)
Q Consensus       248 ~~H~~~h~--~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  286 (294)
                      ..+.+.+.  +.|-.|++|+..+.+..+|.+|+.+.|..++
T Consensus        12 ~~~~k~~~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   12 TKKPKSKSQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             ----CCCCTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             hhHHHHhhccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            34444443  6778888888888888888888888887664

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG2231|consensus

Probab=96.93  E-value=0.0051  Score=55.41  Aligned_cols=50  Identities=20%  Similarity=0.418  Sum_probs=30.2

Q ss_pred             eCCCCccccCCHHHHHHHHHHhCCCcccc---ccccccccCHHHHHHHHhhhc
Q psy6546         206 SCPSCSKSFNRKDRYRMHLKLHQGVRHTC---KECSKEFSNEYNLKNHMVLHD  255 (294)
Q Consensus       206 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~C---~~C~~~f~~~~~l~~H~~~h~  255 (294)
                      .|..|...|.....|.+|++.++..-.-|   ..++.-|.....|..|.+.++
T Consensus       184 ~C~~C~~~fld~~el~rH~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  184 LCKFCHERFLDDDELYRHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             cchhhhhhhccHHHHHHhhccceeheeecCcccccchhcccchHHHHHhhhcC
Confidence            56777777777777777776554433223   233456666677777765553

>smart00355 ZnF_C2H2 zinc finger

Probab=96.84  E-value=0.001  Score=32.59  Aligned_cols=19  Identities=47%  Similarity=0.896  Sum_probs=7.6

Q ss_pred             cccccccccCHHHHHHHHh
Q psy6546         234 CKECSKEFSNEYNLKNHMV  252 (294)
Q Consensus       234 C~~C~~~f~~~~~l~~H~~  252 (294)
                      |..|++.|.....|..|++
T Consensus         3 C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        3 CPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCcchhCCHHHHHHHHH
Confidence            3344444444444444433

>smart00355 ZnF_C2H2 zinc finger

Probab=96.80  E-value=0.0014  Score=32.08  Aligned_cols=24  Identities=38%  Similarity=0.952  Sum_probs=18.1

Q ss_pred             eeCCCCccccCCHHHHHHHHHHhC
Q psy6546         205 YSCPSCSKSFNRKDRYRMHLKLHQ  228 (294)
Q Consensus       205 ~~C~~C~~~f~~~~~l~~H~~~h~  228 (294)
                      |.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            467788888888888888877554

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.79  E-value=0.00036  Score=55.90  Aligned_cols=68  Identities=24%  Similarity=0.644  Sum_probs=40.6

Q ss_pred             CCceeCCC--CccccCCHHHHHHHHHH-hCCCc-cccccccccccCHHHHHHHH-hhhcccccccccccccccchhhhhh
Q psy6546         202 GITYSCPS--CSKSFNRKDRYRMHLKL-HQGVR-HTCKECSKEFSNEYNLKNHM-VLHDVRAYVCELCARQFTRVDHFNH  276 (294)
Q Consensus       202 ~~~~~C~~--C~~~f~~~~~l~~H~~~-h~~~~-~~C~~C~~~f~~~~~l~~H~-~~h~~~~~~C~~C~~~f~~~~~l~~  276 (294)
                      ++||+|++  |++.+.....|+-|+.. |.... ..=+          .-..|. ..-..+||+|++|++.+...-.|+.
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p----------~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKY  416 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENP----------SPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKY  416 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCC----------CccccccccccCCceeccccchhhccCcccee
Confidence            35777744  77777777777777653 21111 0000          000000 0112589999999999999999999


Q ss_pred             hhh
Q psy6546         277 HRR  279 (294)
Q Consensus       277 H~~  279 (294)
                      |+.
T Consensus       417 Hr~  419 (423)
T COG5189         417 HRK  419 (423)
T ss_pred             ccc
Confidence            963

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.66  E-value=0.0012  Score=32.29  Aligned_cols=22  Identities=36%  Similarity=0.836  Sum_probs=12.4

Q ss_pred             eeCCCCccccCCHHHHHHHHHH
Q psy6546         205 YSCPSCSKSFNRKDRYRMHLKL  226 (294)
Q Consensus       205 ~~C~~C~~~f~~~~~l~~H~~~  226 (294)
                      |.|.+|+..|.+...|..|+++
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            4455566666665555555543

>KOG2231|consensus

Probab=96.62  E-value=0.0092  Score=53.82  Aligned_cols=102  Identities=20%  Similarity=0.419  Sum_probs=61.7

Q ss_pred             cCCccCccccChHHHHHHHhhccCcccCCccccc---------ccCChHhHHHHHhhhCC-CC-----ccCCCCCcccCC
Q psy6546          98 PCPQCSRDFATVKILKTHLKTHEGIIYPCPECDK---------TFLSTSGLREHRKVHAG-VR-----YICHACPREFSS  162 (294)
Q Consensus        98 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~C~~C~~---------~f~~~~~l~~H~~~h~~-~~-----~~C~~C~~~f~~  162 (294)
                      .|..| -.|.....|+.|+...+.. +.|.+|-.         ...+...|+.|++.--. .+     -.|..|...|..
T Consensus       117 ~~~~c-~~~~s~~~Lk~H~~~~H~~-~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld  194 (669)
T KOG2231|consen  117 ECLHC-TEFKSVENLKNHMRDQHKL-HLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFLD  194 (669)
T ss_pred             CCccc-cchhHHHHHHHHHHHhhhh-hccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhhcc
Confidence            46666 6667778888888655543 45555432         22345566677653322 22     457777777777


Q ss_pred             HHHHHHHHHhhcCCCcccC---cchhccCCchHHHhHHhhcC
Q psy6546         163 EATMKAHVASHNGVQHACD---QCDRTFSCMPYLRQHQKLHS  201 (294)
Q Consensus       163 ~~~l~~H~~~~~~~~~~C~---~C~~~f~~~~~l~~H~~~h~  201 (294)
                      ...|..|++.++.....|+   .++..|..-..|..|.+..+
T Consensus       195 ~~el~rH~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  195 DDELYRHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             HHHHHHhhccceeheeecCcccccchhcccchHHHHHhhhcC
Confidence            7777777777666544442   34455566667777766654

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.62  E-value=0.002  Score=31.10  Aligned_cols=22  Identities=50%  Similarity=0.928  Sum_probs=11.6

Q ss_pred             eeCCCCccccCCHHHHHHHHHHh
Q psy6546         205 YSCPSCSKSFNRKDRYRMHLKLH  227 (294)
Q Consensus       205 ~~C~~C~~~f~~~~~l~~H~~~h  227 (294)
                      |+|+.|++... ...|.+|++.+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhh
Confidence            45666666665 55666666554

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.51  E-value=0.0035  Score=35.75  Aligned_cols=28  Identities=21%  Similarity=0.478  Sum_probs=18.2

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      .|..|++|+..+.+..+|++|+...++.
T Consensus        23 ~PatCP~C~a~~~~srnLrRHle~~H~~   50 (54)
T PF09237_consen   23 QPATCPICGAVIRQSRNLRRHLEIRHFK   50 (54)
T ss_dssp             --EE-TTT--EESSHHHHHHHHHHHTTT
T ss_pred             CCCCCCcchhhccchhhHHHHHHHHhcc
Confidence            4788888888888888888888766553

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.37  E-value=0.0014  Score=32.00  Aligned_cols=22  Identities=23%  Similarity=0.809  Sum_probs=12.3

Q ss_pred             cccccccccccchhhhhhhhhh
Q psy6546         259 YVCELCARQFTRVDHFNHHRRL  280 (294)
Q Consensus       259 ~~C~~C~~~f~~~~~l~~H~~~  280 (294)
                      |.|.+|++.|.+...|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            4455555555555555555543

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.31  E-value=0.0021  Score=32.11  Aligned_cols=22  Identities=18%  Similarity=0.726  Sum_probs=17.4

Q ss_pred             cccccccccccchhhhhhhhhh
Q psy6546         259 YVCELCARQFTRVDHFNHHRRL  280 (294)
Q Consensus       259 ~~C~~C~~~f~~~~~l~~H~~~  280 (294)
                      |.|..|++.|.+...|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6788888888888888888765

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG1146|consensus

Probab=96.25  E-value=0.0026  Score=60.80  Aligned_cols=104  Identities=18%  Similarity=0.290  Sum_probs=71.5

Q ss_pred             CCccCccchhccCCHHHHHHHHHHhCCcccCCccCccchhccccCCCCCCCccchhhcccCCCCCcccCCccCccccChH
Q psy6546          31 TRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSRDFATVK  110 (294)
Q Consensus        31 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~  110 (294)
                      +.++|+.|++.|.....|..||+..+...-. .+|.-.-..          .+...-......-++|.|..|...+....
T Consensus       464 kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~-~~c~~gq~~----------~~~arg~~~~~~~~p~~C~~C~~stttng  532 (1406)
T KOG1146|consen  464 KTLKCPKCNWHYKLAQTLGVHMRSKHPESQS-AYCKAGQNH----------PRLARGEVYRCPGKPYPCRACNYSTTTNG  532 (1406)
T ss_pred             ccccCCccchhhhhHHHhhhcccccccccch-hHhHhcccc----------ccccccccccCCCCcccceeeeeeeecch
Confidence            5589999999999999999999864332111 222111100          01222222344568899999999999999


Q ss_pred             HHHHHHhhcc--------------------------------------------CcccCCcccccccCChHhHHHHHhh
Q psy6546         111 ILKTHLKTHE--------------------------------------------GIIYPCPECDKTFLSTSGLREHRKV  145 (294)
Q Consensus       111 ~l~~H~~~~~--------------------------------------------~~~~~C~~C~~~f~~~~~l~~H~~~  145 (294)
                      .|.+|++...                                            ..+|.|.+|++..+-..+|+.||..
T Consensus       533 ~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmts  611 (1406)
T KOG1146|consen  533 NLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMTA  611 (1406)
T ss_pred             HHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcchhhhhhcccccccc
Confidence            9999986641                                            0147899998888888888888853

>KOG1146|consensus

Probab=96.21  E-value=0.0011  Score=63.14  Aligned_cols=99  Identities=18%  Similarity=0.332  Sum_probs=60.3

Q ss_pred             CcccccccCChHhHHHHHhhh-CCCC-ccCCCCCcccCCHHHHHHHHHhhcCCCcccCcchhccCCchHHHh-HHhhcCC
Q psy6546         126 CPECDKTFLSTSGLREHRKVH-AGVR-YICHACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQ-HQKLHSG  202 (294)
Q Consensus       126 C~~C~~~f~~~~~l~~H~~~h-~~~~-~~C~~C~~~f~~~~~l~~H~~~~~~~~~~C~~C~~~f~~~~~l~~-H~~~h~~  202 (294)
                      |.-++..+.....+..|+..- ...+ +.|+.|+..|+....|..||+..+.+.-. .+|... ..-..+.+ -.....+
T Consensus       439 ~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~-~~c~~g-q~~~~~arg~~~~~~~  516 (1406)
T KOG1146|consen  439 LTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQS-AYCKAG-QNHPRLARGEVYRCPG  516 (1406)
T ss_pred             ccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccch-hHhHhc-cccccccccccccCCC
Confidence            333444444444444444322 2223 89999999999999999999986664222 333221 11111111 1123334


Q ss_pred             CceeCCCCccccCCHHHHHHHHHH
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKL  226 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~  226 (294)
                      ++|.|..|+..++...+|..|++.
T Consensus       517 ~p~~C~~C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  517 KPYPCRACNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             CcccceeeeeeeecchHHHHHHHH
Confidence            689999999999999999999864

>PRK04860 hypothetical protein; Provisional

Probab=95.34  E-value=0.0081  Score=44.53  Aligned_cols=36  Identities=22%  Similarity=0.607  Sum_probs=24.1

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccccccC
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSN  243 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~  243 (294)
                      +|.|. |+.   ....+.+|.++|.++. |.|..|+..|..
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF  155 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence            67776 776   4555677777777755 777777766654

>PRK04860 hypothetical protein; Provisional

Probab=95.28  E-value=0.013  Score=43.53  Aligned_cols=35  Identities=20%  Similarity=0.562  Sum_probs=20.3

Q ss_pred             cccccccccccCHHHHHHHHhhhc-ccccccccccccccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTR  270 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~  270 (294)
                      |.|. |+.   ....+..|.++|. +++|.|..|+..|..
T Consensus       120 Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        120 YRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF  155 (160)
T ss_pred             EEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence            6665 654   4455566666664 455666666665543

>KOG2785|consensus

Probab=95.11  E-value=0.016  Score=48.23  Aligned_cols=82  Identities=18%  Similarity=0.340  Sum_probs=49.7

Q ss_pred             CccCccchhccCCHHHHHHHHHHhCCc------ccC-CccCccchhccccCCCCCCCccchhhcccCCCCCcccCCccCc
Q psy6546          32 RHPCPQCSRDFATVKILKTHLKTHEGI------IYP-CPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSR  104 (294)
Q Consensus        32 ~~~C~~C~~~f~~~~~l~~H~~~~~~~------~~~-c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~  104 (294)
                      .|.|.-|...|.+...-+.|++.-+..      ... -++-...|.......      ..........+..++.|..|.+
T Consensus         3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~------~~~~~~~~e~~~~~~~c~~c~k   76 (390)
T KOG2785|consen    3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSD------DSEKEENLEEAESVVYCEACNK   76 (390)
T ss_pred             cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhh------hhhhhhhhhhcccceehHHhhc
Confidence            589999999999999999999754331      111 111222232221000      0000011234566788999999


Q ss_pred             cccChHHHHHHHhhc
Q psy6546         105 DFATVKILKTHLKTH  119 (294)
Q Consensus       105 ~f~~~~~l~~H~~~~  119 (294)
                      .|........|+..-
T Consensus        77 ~~~s~~a~~~hl~Sk   91 (390)
T KOG2785|consen   77 SFASPKAHENHLKSK   91 (390)
T ss_pred             cccChhhHHHHHHHh
Confidence            999998888887654

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=94.99  E-value=0.01  Score=29.51  Aligned_cols=21  Identities=48%  Similarity=0.825  Sum_probs=13.1

Q ss_pred             cccccccccccCHHHHHHHHh
Q psy6546         232 HTCKECSKEFSNEYNLKNHMV  252 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~  252 (294)
                      |.|..|++.|.+...|..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            456666666666666666654

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.75  E-value=0.038  Score=26.91  Aligned_cols=22  Identities=41%  Similarity=0.797  Sum_probs=18.3

Q ss_pred             CccCccchhccCCHHHHHHHHHH
Q psy6546          32 RHPCPQCSRDFATVKILKTHLKT   54 (294)
Q Consensus        32 ~~~C~~C~~~f~~~~~l~~H~~~   54 (294)
                      ...|+.||+.| ....|..|+..
T Consensus         2 l~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    2 LVPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CCcCCCCCCEE-CHHHHHHHHHh
Confidence            46899999999 68889999764

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.49  E-value=0.048  Score=44.71  Aligned_cols=79  Identities=20%  Similarity=0.340  Sum_probs=45.9

Q ss_pred             eCCCCccccCCHHHHHHHHHHhCCCcccccccc----ccccCHHHHHHHHhhhc-cccc-cccccc-ccccchhhhhhhh
Q psy6546         206 SCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECS----KEFSNEYNLKNHMVLHD-VRAY-VCELCA-RQFTRVDHFNHHR  278 (294)
Q Consensus       206 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~----~~f~~~~~l~~H~~~h~-~~~~-~C~~C~-~~f~~~~~l~~H~  278 (294)
                      .|..|+..|.+...|..|++..+..-|.|..-+    .-|.+..+|..|-+.-+ .-.| .|.+-. +.|....+|..|+
T Consensus       222 ~C~FC~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~~hy~ct~qtc~~~k~~vf~~~~el~~h~  301 (493)
T COG5236         222 LCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFRNAHYCCTFQTCRVGKCYVFPYHTELLEHL  301 (493)
T ss_pred             hhhhccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhhcCceEEEEEEEecCcEEEeccHHHHHHHH
Confidence            577788888888888888777666556665544    24556666666633221 1111 121111 2567777777777


Q ss_pred             hhccCc
Q psy6546         279 RLQHDP  284 (294)
Q Consensus       279 ~~~h~~  284 (294)
                      ..-|+.
T Consensus       302 ~~~h~~  307 (493)
T COG5236         302 TRFHKV  307 (493)
T ss_pred             HHHhhc
Confidence            666554

>KOG2482|consensus

Probab=94.48  E-value=0.33  Score=39.95  Aligned_cols=63  Identities=25%  Similarity=0.395  Sum_probs=39.9

Q ss_pred             HHHHHHhhccCc--ccCCccccccc-CChHhHHHHHhhhCCC-----------------------CccCCCCCcccCCHH
Q psy6546         111 ILKTHLKTHEGI--IYPCPECDKTF-LSTSGLREHRKVHAGV-----------------------RYICHACPREFSSEA  164 (294)
Q Consensus       111 ~l~~H~~~~~~~--~~~C~~C~~~f-~~~~~l~~H~~~h~~~-----------------------~~~C~~C~~~f~~~~  164 (294)
                      .|..+++...+.  ..+|-.|...+ .+++.+..|+-.-++-                       ++.|-.|.+.|+.+.
T Consensus       130 aLeqqQ~Eredt~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkn  209 (423)
T KOG2482|consen  130 ALEQQQKEREDTIFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKN  209 (423)
T ss_pred             HHHHHHHHhcCCeeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcH
Confidence            344555554443  56788887654 4567777776432211                       267888888888888


Q ss_pred             HHHHHHHhh
Q psy6546         165 TMKAHVASH  173 (294)
Q Consensus       165 ~l~~H~~~~  173 (294)
                      .|+.||+..
T Consensus       210 tLkeHMrkK  218 (423)
T KOG2482|consen  210 TLKEHMRKK  218 (423)
T ss_pred             HHHHHHHhc
Confidence            888887763

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.34  E-value=0.15  Score=41.90  Aligned_cols=137  Identities=22%  Similarity=0.336  Sum_probs=83.0

Q ss_pred             CccCcc--chhccCCHHHHHHHHHHhCCcccCCccCc---cchhccccCCCCCCCccchhhcccCC---C-CCcccCCcc
Q psy6546          32 RHPCPQ--CSRDFATVKILKTHLKTHEGIIYPCPECD---KTFLSTLTGTPQGARGRAVYLSRMST---T-LTRHPCPQC  102 (294)
Q Consensus        32 ~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~c~~c~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~C~~C  102 (294)
                      .|.||.  |.........|..|.+..++. +.|..|.   +.|....+...+   ..+..+.....   + .+--.|..|
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~-~~C~~C~~nKk~F~~E~~lF~~---~~Lr~H~~~G~~e~GFKGHP~C~FC  226 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHGF-VLCSECIGNKKDFWNEIRLFRS---STLRDHKNGGLEEEGFKGHPLCIFC  226 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcCc-EEhHhhhcCcccCccceeeeec---ccccccccCCccccCcCCCchhhhc
Confidence            378985  888888899999999877664 3355553   233222111100   01111111111   1 222369999


Q ss_pred             CccccChHHHHHHHhhccCcccCCccccc-------ccCChHhHHHHHhhhCCCC--ccCCC-CCcccCCHHHHHHHHHh
Q psy6546         103 SRDFATVKILKTHLKTHEGIIYPCPECDK-------TFLSTSGLREHRKVHAGVR--YICHA-CPREFSSEATMKAHVAS  172 (294)
Q Consensus       103 ~~~f~~~~~l~~H~~~~~~~~~~C~~C~~-------~f~~~~~l~~H~~~h~~~~--~~C~~-C~~~f~~~~~l~~H~~~  172 (294)
                      ..-|.+...|..|++..+..   |-+|++       -|.+...|..|.+.-+.--  -.|.. =-.+|+....|..|+..
T Consensus       227 ~~~FYdDDEL~~HcR~~HE~---ChICD~v~p~~~QYFK~Y~~Le~HF~~~hy~ct~qtc~~~k~~vf~~~~el~~h~~~  303 (493)
T COG5236         227 KIYFYDDDELRRHCRLRHEA---CHICDMVGPIRYQYFKSYEDLEAHFRNAHYCCTFQTCRVGKCYVFPYHTELLEHLTR  303 (493)
T ss_pred             cceecChHHHHHHHHhhhhh---hhhhhccCccchhhhhCHHHHHHHhhcCceEEEEEEEecCcEEEeccHHHHHHHHHH
Confidence            99999999999999998875   555543       4666677777776433211  11221 12578899999999877


Q ss_pred             hcC
Q psy6546         173 HNG  175 (294)
Q Consensus       173 ~~~  175 (294)
                      -++
T Consensus       304 ~h~  306 (493)
T COG5236         304 FHK  306 (493)
T ss_pred             Hhh
Confidence            654

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.21  E-value=0.053  Score=26.38  Aligned_cols=19  Identities=42%  Similarity=0.945  Sum_probs=12.1

Q ss_pred             eCCCCccccCCHHHHHHHHH
Q psy6546         206 SCPSCSKSFNRKDRYRMHLK  225 (294)
Q Consensus       206 ~C~~C~~~f~~~~~l~~H~~  225 (294)
                      .|+.||+.| ..+.|.+|+.
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            567777777 4555666654

>KOG2785|consensus

Probab=94.18  E-value=0.18  Score=42.12  Aligned_cols=49  Identities=22%  Similarity=0.417  Sum_probs=39.7

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCC------------------------cccccccc---ccccCHHHHHHHHh
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGV------------------------RHTCKECS---KEFSNEYNLKNHMV  252 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~------------------------~~~C~~C~---~~f~~~~~l~~H~~  252 (294)
                      |-.|..|+..+.+-..-..||..+||.                        .+.|-.|+   +.|.+..+.+.|+.
T Consensus       166 Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~  241 (390)
T KOG2785|consen  166 PTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMR  241 (390)
T ss_pred             CcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHh
Confidence            577999999999988889999887752                        16788888   88888888888863

>smart00451 ZnF_U1 U1-like zinc finger

Probab=94.06  E-value=0.049  Score=28.89  Aligned_cols=23  Identities=26%  Similarity=0.506  Sum_probs=16.8

Q ss_pred             ceeCCCCccccCCHHHHHHHHHH
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKL  226 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~  226 (294)
                      +|.|..|+..|.+...+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            56777888888777777777653

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=92.08  E-value=0.14  Score=27.04  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=16.2

Q ss_pred             cccCCccCccccChHHHHHHHhh
Q psy6546          96 RHPCPQCSRDFATVKILKTHLKT  118 (294)
Q Consensus        96 ~~~C~~C~~~f~~~~~l~~H~~~  118 (294)
                      +|.|..|++.|.+...+..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            46677777777777777777644

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2482|consensus

Probab=90.97  E-value=0.39  Score=39.58  Aligned_cols=53  Identities=23%  Similarity=0.416  Sum_probs=38.1

Q ss_pred             CCcccCCccCcccc-ChHHHHHHHhhccC----c-------------------ccCCcccccccCChHhHHHHHhhh
Q psy6546          94 LTRHPCPQCSRDFA-TVKILKTHLKTHEG----I-------------------IYPCPECDKTFLSTSGLREHRKVH  146 (294)
Q Consensus        94 ~~~~~C~~C~~~f~-~~~~l~~H~~~~~~----~-------------------~~~C~~C~~~f~~~~~l~~H~~~h  146 (294)
                      ....+|-.|...+. .++.+..|+-.-++    .                   .++|-.|++.|+++..|+.||+..
T Consensus       142 ~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK  218 (423)
T KOG2482|consen  142 IFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKK  218 (423)
T ss_pred             eeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhc
Confidence            34567999976554 44556667644332    1                   378999999999999999999753

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=90.91  E-value=0.14  Score=29.78  Aligned_cols=30  Identities=23%  Similarity=0.406  Sum_probs=25.3

Q ss_pred             CCCCCccCccchhccCCHHHHHHHHHHhCC
Q psy6546          28 TTPTRHPCPQCSRDFATVKILKTHLKTHEG   57 (294)
Q Consensus        28 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~   57 (294)
                      .+...++||.|+..|+.+.+...|+...++
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            456678999999999999999999975544

>KOG4173|consensus

Probab=90.88  E-value=0.17  Score=38.37  Aligned_cols=46  Identities=24%  Similarity=0.574  Sum_probs=20.0

Q ss_pred             ccCCC--CCcccCCHHHHHHHHHhhcCCCcccCcchhccCCchHHHhHHh
Q psy6546         151 YICHA--CPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQK  198 (294)
Q Consensus       151 ~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~C~~C~~~f~~~~~l~~H~~  198 (294)
                      +.|..  |-..|........|-.+.++  ..|..|.+.|.+...|-.|+.
T Consensus        80 ~~cqvagc~~~~d~lD~~E~hY~~~h~--~sCs~C~r~~Pt~hLLd~HI~  127 (253)
T KOG4173|consen   80 FACQVAGCCQVFDALDDYEHHYHTLHG--NSCSFCKRAFPTGHLLDAHIL  127 (253)
T ss_pred             ccccccchHHHHhhhhhHHHhhhhccc--chhHHHHHhCCchhhhhHHHH
Confidence            44444  33444433333333333222  245555555555555555443

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=90.77  E-value=0.12  Score=27.10  Aligned_cols=11  Identities=36%  Similarity=1.216  Sum_probs=5.2

Q ss_pred             eeCCCCccccC
Q psy6546         205 YSCPSCSKSFN  215 (294)
Q Consensus       205 ~~C~~C~~~f~  215 (294)
                      |+|..||..+.
T Consensus         2 ~~C~~CGy~y~   12 (33)
T cd00350           2 YVCPVCGYIYD   12 (33)
T ss_pred             EECCCCCCEEC
Confidence            44555554443

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG2893|consensus

Probab=90.12  E-value=0.092  Score=40.74  Aligned_cols=42  Identities=38%  Similarity=0.709  Sum_probs=34.4

Q ss_pred             cCCccCccccChHHHHHHHhhccCcccCCcccccccCChHhHHHH
Q psy6546          98 PCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTSGLREH  142 (294)
Q Consensus        98 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~C~~C~~~f~~~~~l~~H  142 (294)
                      .|=.|++.|.+..-|.+|++.-+   |+|.+|.+.+.+--.|..|
T Consensus        12 wcwycnrefddekiliqhqkakh---fkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKAKH---FKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeeecccccchhhhhhhhhhhcc---ceeeeehhhhccCCCceee
Confidence            68899999999999999987754   8999998887666666555

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=88.85  E-value=0.46  Score=32.91  Aligned_cols=80  Identities=16%  Similarity=0.291  Sum_probs=46.3

Q ss_pred             CceeCCCCccccCCHHHHHHHHHH-hCCCc-cccccccccccCHHHH-HHHHhhh----------c---cccccc----c
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKL-HQGVR-HTCKECSKEFSNEYNL-KNHMVLH----------D---VRAYVC----E  262 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~-~~C~~C~~~f~~~~~l-~~H~~~h----------~---~~~~~C----~  262 (294)
                      +-..|..|+....- +.+..|++. |+..+ ..-..=.+.+.....| .....+-          +   ..-|.|    +
T Consensus        10 ~vlIC~~C~~av~~-~~v~~HL~~~H~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~p~~~~~Pi~gLp~~~G~~C~~~~~   88 (109)
T PF12013_consen   10 RVLICRQCQYAVQP-SEVESHLRKRHHILKSQERQRIVEAIRQWPDLLPDPDDLQIPPDPSPPIPGLPVYDGYRCQCDPP   88 (109)
T ss_pred             CEEEeCCCCcccCc-hHHHHHHHHhcccccHHHHHHHHHHHHhhhhcccCccccCCCCCCCCcCCCCCCCCCeeeecCCC
Confidence            35789999988876 789999985 43321 1000000111111111 0000000          0   123889    9


Q ss_pred             cccccccchhhhhhhhhhccC
Q psy6546         263 LCARQFTRVDHFNHHRRLQHD  283 (294)
Q Consensus       263 ~C~~~f~~~~~l~~H~~~~h~  283 (294)
                      .|++.+.+...+..|.+.+|+
T Consensus        89 ~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   89 HCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CCCcEeccHHHHHHHHHHhcC
Confidence            999999999999999998885

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=86.95  E-value=0.099  Score=45.86  Aligned_cols=53  Identities=26%  Similarity=0.607  Sum_probs=28.2

Q ss_pred             cCCcccccccCChHhHHHHHh--hhCCC--C-ccCC--CCCcccCCHHHHHHHHHhhcCC
Q psy6546         124 YPCPECDKTFLSTSGLREHRK--VHAGV--R-YICH--ACPREFSSEATMKAHVASHNGV  176 (294)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~--~h~~~--~-~~C~--~C~~~f~~~~~l~~H~~~~~~~  176 (294)
                      +.|..|...|.....|..|..  .|.++  + +.|+  .|++.|.....+..|...+++.
T Consensus       290 ~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  349 (467)
T COG5048         290 IKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSI  349 (467)
T ss_pred             CCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCC
Confidence            445555555555555555555  45544  3 5555  4555555555555555555543

>TIGR00622 ssl1 transcription factor ssl1

Probab=86.87  E-value=0.67  Score=31.91  Aligned_cols=20  Identities=20%  Similarity=0.375  Sum_probs=12.2

Q ss_pred             CCccCccchhccCCHHHHHH
Q psy6546          31 TRHPCPQCSRDFATVKILKT   50 (294)
Q Consensus        31 ~~~~C~~C~~~f~~~~~l~~   50 (294)
                      -|..|+.||...-....|.+
T Consensus        14 LP~~CpiCgLtLVss~HLAR   33 (112)
T TIGR00622        14 LPVECPICGLTLILSTHLAR   33 (112)
T ss_pred             CCCcCCcCCCEEeccchHHH
Confidence            35667777776665555553

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2893|consensus

Probab=86.27  E-value=0.21  Score=38.87  Aligned_cols=47  Identities=26%  Similarity=0.540  Sum_probs=31.7

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCCccccccccccccCHHHHHHH-Hhhh
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNH-MVLH  254 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H-~~~h  254 (294)
                      +| |=+|++-|....-|.+|++..   -|+|-+|.+.+-+.-.|..| +.+|
T Consensus        11 pw-cwycnrefddekiliqhqkak---hfkchichkkl~sgpglsihcmqvh   58 (341)
T KOG2893|consen   11 PW-CWYCNREFDDEKILIQHQKAK---HFKCHICHKKLFSGPGLSIHCMQVH   58 (341)
T ss_pred             ce-eeecccccchhhhhhhhhhhc---cceeeeehhhhccCCCceeehhhhh
Confidence            44 667788888777777776541   17788887776666666666 4555

>KOG2186|consensus

Probab=84.27  E-value=0.57  Score=36.97  Aligned_cols=45  Identities=18%  Similarity=0.522  Sum_probs=24.8

Q ss_pred             cCCcccccccCChHhHHHHHhhhCCCCccCCCCCcccCCHHHHHHHH
Q psy6546         124 YPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHV  170 (294)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~  170 (294)
                      |.|..||.... +..+.+|+...++..|.|-.|++.|.. .....|.
T Consensus         4 FtCnvCgEsvK-Kp~vekH~srCrn~~fSCIDC~k~F~~-~sYknH~   48 (276)
T KOG2186|consen    4 FTCNVCGESVK-KPQVEKHMSRCRNAYFSCIDCGKTFER-VSYKNHT   48 (276)
T ss_pred             Eehhhhhhhcc-ccchHHHHHhccCCeeEEeeccccccc-chhhhhh
Confidence            45666665533 234445666666655666666666655 3444443

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=83.85  E-value=0.34  Score=42.49  Aligned_cols=58  Identities=26%  Similarity=0.509  Sum_probs=43.1

Q ss_pred             ccccccccccccCHHHHHHHHh--hhc-c--cccccc--cccccccchhhhhhhhhhccCccccc
Q psy6546         231 RHTCKECSKEFSNEYNLKNHMV--LHD-V--RAYVCE--LCARQFTRVDHFNHHRRLQHDPEEFE  288 (294)
Q Consensus       231 ~~~C~~C~~~f~~~~~l~~H~~--~h~-~--~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~  288 (294)
                      ++.|..|...|.....|..|.+  .|. +  +++.|+  .|++.|.....+..|...|.+..+..
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAK  353 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccc
Confidence            3677777777877777777777  665 5  677777  68888888877777777777766553

>TIGR00622 ssl1 transcription factor ssl1

Probab=83.49  E-value=2.3  Score=29.34  Aligned_cols=49  Identities=18%  Similarity=0.385  Sum_probs=32.7

Q ss_pred             cCCccCccccChHHHHHHHhhccCcccCCcccccccCChHhHHHHHhhhC
Q psy6546          98 PCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTSGLREHRKVHA  147 (294)
Q Consensus        98 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  147 (294)
                      .|..|...|........-. ......|+|+.|...|-..-++-.|...|.
T Consensus        57 ~C~~C~~~f~~~~~~~~~~-~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~  105 (112)
T TIGR00622        57 FCFGCQGPFPKPPVSPFDE-LKDSHRYVCAVCKNVFCVDCDVFVHESLHC  105 (112)
T ss_pred             cccCcCCCCCCcccccccc-cccccceeCCCCCCccccccchhhhhhccC
Confidence            4999999887653211110 112236999999999988888877776654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=83.46  E-value=0.5  Score=37.36  Aligned_cols=26  Identities=12%  Similarity=0.285  Sum_probs=17.5

Q ss_pred             ccccccccccccccchhhhhhhhhhc
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQ  281 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~  281 (294)
                      .+++.|+.|++..+.-..|.--.|+|
T Consensus       207 ~k~~PCPKCg~et~eTkdLSmStR~h  232 (314)
T PF06524_consen  207 GKPIPCPKCGYETQETKDLSMSTRSH  232 (314)
T ss_pred             CCCCCCCCCCCcccccccceeeeecc
Confidence            56777777777777766666555444

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=83.08  E-value=0.74  Score=22.59  Aligned_cols=6  Identities=50%  Similarity=1.591  Sum_probs=2.2

Q ss_pred             CCCCcc
Q psy6546         207 CPSCSK  212 (294)
Q Consensus       207 C~~C~~  212 (294)
                      |+.||+
T Consensus        17 Cp~CG~   22 (26)
T PF10571_consen   17 CPHCGY   22 (26)
T ss_pred             CCCCCC
Confidence            333333

Several members are annotated as putative helicases.

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=82.80  E-value=0.94  Score=26.98  Aligned_cols=31  Identities=16%  Similarity=0.309  Sum_probs=14.7

Q ss_pred             cccccccccccCHHHHHHHHhhhcccccccccccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHDVRAYVCELCAR  266 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~  266 (294)
                      |.|+.||+.-.....-    -.....+|+|+.||+
T Consensus        28 F~CPnCGe~~I~Rc~~----CRk~g~~Y~Cp~CGF   58 (61)
T COG2888          28 FPCPNCGEVEIYRCAK----CRKLGNPYRCPKCGF   58 (61)
T ss_pred             eeCCCCCceeeehhhh----HHHcCCceECCCcCc
Confidence            5566665443333221    111245666666664

>KOG2186|consensus

Probab=82.14  E-value=0.93  Score=35.80  Aligned_cols=47  Identities=28%  Similarity=0.647  Sum_probs=30.7

Q ss_pred             cccCcchhccCCchHHHhHHhhcCCCceeCCCCccccCCHHHHHHHHHH
Q psy6546         178 HACDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKL  226 (294)
Q Consensus       178 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~  226 (294)
                      |.|..||.... +..+..|+...++.-|.|..|++.|.. .....|.+-
T Consensus         4 FtCnvCgEsvK-Kp~vekH~srCrn~~fSCIDC~k~F~~-~sYknH~kC   50 (276)
T KOG2186|consen    4 FTCNVCGESVK-KPQVEKHMSRCRNAYFSCIDCGKTFER-VSYKNHTKC   50 (276)
T ss_pred             Eehhhhhhhcc-ccchHHHHHhccCCeeEEeeccccccc-chhhhhhhh
Confidence            56777775544 345556777777777777777777776 445566543

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=81.98  E-value=3.4  Score=28.53  Aligned_cols=27  Identities=22%  Similarity=0.534  Sum_probs=24.3

Q ss_pred             CCccC----ccchhccCCHHHHHHHHHHhCC
Q psy6546          31 TRHPC----PQCSRDFATVKILKTHLKTHEG   57 (294)
Q Consensus        31 ~~~~C----~~C~~~f~~~~~l~~H~~~~~~   57 (294)
                      ..|.|    ..|+....+...+..|++.+|+
T Consensus        79 ~G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   79 DGYRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CCeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            56999    9999999999999999987764

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=81.65  E-value=0.7  Score=24.36  Aligned_cols=9  Identities=22%  Similarity=0.781  Sum_probs=4.4

Q ss_pred             ccccccccc
Q psy6546         258 AYVCELCAR  266 (294)
Q Consensus       258 ~~~C~~C~~  266 (294)
                      |..|++|+.
T Consensus        18 p~~CP~Cg~   26 (34)
T cd00729          18 PEKCPICGA   26 (34)
T ss_pred             CCcCcCCCC
Confidence            344555554

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG4173|consensus

Probab=81.57  E-value=0.72  Score=35.15  Aligned_cols=81  Identities=23%  Similarity=0.541  Sum_probs=60.8

Q ss_pred             CcccCc--chhccCCchHHHhHHhhcCCCceeCCCCccccCCHHHHHHHHHHhC----------CCc-ccc--ccccccc
Q psy6546         177 QHACDQ--CDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQ----------GVR-HTC--KECSKEF  241 (294)
Q Consensus       177 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~----------~~~-~~C--~~C~~~f  241 (294)
                      .+.|+.  |...|.+...+..|...-++.  .|..|.+.|.+.--|..|+...+          |.. |.|  ..|+..|
T Consensus        79 ~~~cqvagc~~~~d~lD~~E~hY~~~h~~--sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KF  156 (253)
T KOG4173|consen   79 AFACQVAGCCQVFDALDDYEHHYHTLHGN--SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKF  156 (253)
T ss_pred             cccccccchHHHHhhhhhHHHhhhhcccc--hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhh
Confidence            467865  778888888888887554443  69999999999999999976433          333 888  5699999


Q ss_pred             cCHHHHHHHH-hhhc-cccc
Q psy6546         242 SNEYNLKNHM-VLHD-VRAY  259 (294)
Q Consensus       242 ~~~~~l~~H~-~~h~-~~~~  259 (294)
                      .....-..|. ++|. ...|
T Consensus       157 kT~r~RkdH~I~~Hk~Pa~f  176 (253)
T KOG4173|consen  157 KTSRDRKDHMIRMHKYPADF  176 (253)
T ss_pred             hhhhhhhhHHHHhccCCcce
Confidence            9999988894 6664 4433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	294
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		6e-25
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		7e-14
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		6e-09
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		8e-09
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		8e-08
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		2e-04
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		1e-07
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		4e-07
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		8e-07
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		3e-06
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		2e-04
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		4e-06
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		4e-04
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		5e-06
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		6e-06
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		7e-06
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		2e-05
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		3e-04
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		7e-06
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		8e-06
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		1e-04
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		9e-06
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		6e-05
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		1e-05
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		5e-05
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		1e-05
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		4e-05
1tf6_A	190	Co-crystal Structure Of Xenopus Tfiiia Zinc Finger		3e-05
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		4e-05
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		1e-04
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		5e-05
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		6e-04
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		3e-04
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		5e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score =  110 bits (276), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 88/161 (54%), Gaps = 5/161 (3%)
Query: 99  CPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHAC 156
           CP+C + F+    L  H +TH G   Y CPEC K+F     L  H++ H G + Y C  C
Sbjct: 24  CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 157 PREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSF 214
            + FS  A ++AH  +H G + +AC +C ++FS + +LR HQ+ H+G   Y CP C KSF
Sbjct: 84  GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSF 143
Query: 215 NRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
           +R+D    H + H G + + C EC K FS    L  H   H
Sbjct: 144 SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 159 EFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRK 217
           EF S +++           +AC +C ++FS   +L +HQ+ H+G   Y CP C KSF+ K
Sbjct: 3   EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 218 DRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFN 275
                H + H G + + C EC K FS   NL+ H   H   + Y C  C + F+++ H  
Sbjct: 63  KDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLR 122
Query: 276 HHRR 279
            H+R
Sbjct: 123 AHQR 126

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HACD 181
           Y CPEC K+F  +S L++H++ H G + Y C  C + FS  + ++ H  +H G + + C 
Sbjct: 5   YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 182 QCDRTFSCMPYLRQHQKLH 200
           +C ++FS   +L +HQ+ H
Sbjct: 65  ECGKSFSRSDHLSRHQRTH 83

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCE 262
           Y CP C KSF++    + H + H G + + C EC K FS   +L+ H   H   + Y C 
Sbjct: 5   YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 263 LCARQFTRVDHFNHHRR 279
            C + F+R DH + H+R
Sbjct: 65  ECGKSFSRSDHLSRHQR 81

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 124 YPCP--ECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HA 179
           Y CP   CD+ F   + L  H ++H G + + C  C R FS +A++ AH+ +H G +  A
Sbjct: 5   YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 180 CDQCDRTFSCMPYLRQHQKLH 200
           CD C R F+ +    +H K+H
Sbjct: 65  CDICGRKFATLHTRTRHTKIH 85

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 205 YSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYV 260
           Y+CP  SC + F++K     H+++H G +   C+ C + FS + +L  H+  H   + + 
Sbjct: 5   YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 261 CELCARQF----TRVDHFNHHRR 279
           C++C R+F    TR  H   H R
Sbjct: 65  CDICGRKFATLHTRTRHTKIHLR 87

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 155 ACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG-ITYSC--PSCS 211
            C + F   + M+ H+ +H    H C +C + F     L++HQ +H+G   + C    C 
Sbjct: 12  GCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 212 KSFNRKDRYRMHLKLHQGVR-HTC--KECSKEFSNEYNLKNHMVLH 254
           K F+     R H+++H G R + C    C+K+F+   NLK+H++ H
Sbjct: 72  KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 25/105 (23%)
Query: 179 ACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKEC 237
           AC+ C + F  + +L +H+  HSG   YSCP C   F RKDR   H++ H G        
Sbjct: 9   ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV------ 62
Query: 238 SKEFSNEYNLKNHMVLHDVRAYVCELCARQFTRVDHFNHHRRLQH 282
                              + Y+C+ C + F+R DH N H +  H
Sbjct: 63  ------------------GKPYICQSCGKGFSRPDHLNGHIKQVH 89

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 210 CSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQ 267
           C KSF  K +   H+ +H G+R + C  C K+F  +++L  HM +H  ++ Y C +CA++
Sbjct: 15  CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 268 FTRVDHFNHH 277
           F   D F+ H
Sbjct: 75  FMWRDSFHRH 84

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 124 YPCP--ECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HA 179
           Y CP   CD+ F  +S L  H ++H G + + C  C R FS    +  H+ +H G +  A
Sbjct: 5   YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 180 CDQCDRTFSCMPYLRQHQKLH 200
           CD C R F+     ++H K+H
Sbjct: 65  CDICGRKFARSDERKRHTKIH 85

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 205 YSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYV 260
           Y+CP  SC + F+       H+++H G +   C+ C + FS   +L  H+  H   + + 
Sbjct: 5   YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 261 CELCARQFTRVDHFNHHRRL 280
           C++C R+F R D    H ++
Sbjct: 65  CDICGRKFARSDERKRHTKI 84

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 124 YPCP--ECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HA 179
           Y CP   CD+ F   + L  H ++H G + + C  C R FS    +  H+ +H G +  A
Sbjct: 5   YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 180 CDQCDRTFSCMPYLRQHQKLH 200
           CD C R F+ +    +H K+H
Sbjct: 65  CDICGRKFATLHTRDRHTKIH 85

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 205 YSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYV 260
           Y+CP  SC + F++K     H+++H G +   C+ C + FS    L  H+  H   + + 
Sbjct: 5   YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 261 CELCARQFTRVDHFNHHRRL 280
           C++C R+F  +   + H ++
Sbjct: 65  CDICGRKFATLHTRDRHTKI 84

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 205 YSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYV 260
           Y+CP  SC + F+R D    H+++H G +   C+ C + FS   +L  H+  H   + + 
Sbjct: 4   YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 261 CELCARQFTRVDHFNHHRRL 280
           C++C R+F R D    H ++
Sbjct: 64  CDICGRKFARSDERKRHTKI 83

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 205 YSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYV 260
           Y+CP  SC + F+R D    H+++H G +   C+ C + FS   +L  H+  H   + + 
Sbjct: 5   YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 261 CELCARQFTRVDHFNHHRRL 280
           C++C R+F R D    H ++
Sbjct: 65  CDICGRKFARSDERKRHTKI 84

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 28/132 (21%)
Query: 100 PQCSRDFATVKILKTHLKTHEG-IIYPC--PECDKTFLSTSGLREHRKVHAGVR-YICHA 155
           P C++ +  +  L+ H + H G   Y C   +C++ F  +  L+ H++ H GV+ + C  
Sbjct: 12  PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT 71
Query: 156 CPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFN 215
           C R+FS    +K H  +H G        ++ FSC                  PSC K F 
Sbjct: 72  CQRKFSRSDHLKTHTRTHTG--------EKPFSC----------------RWPSCQKKFA 107
Query: 216 RKDRYRMHLKLH 227
           R D    H  +H
Sbjct: 108 RSDELVRHHNMH 119

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 155 ACPREFSSEATMKAHVASHNGVQ-HACD--QCDRTFSCMPYLRQHQKLHSGIT-YSCPSC 210
            C + +   + ++ H   H G + + CD   C+R FS    L++HQ+ H+G+  + C +C
Sbjct: 13  GCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTC 72
Query: 211 SKSFNRKDRYRMHLKLHQGVR-HTCK--ECSKEFSNEYNLKNHMVLH 254
            + F+R D  + H + H G +  +C+   C K+F+    L  H  +H
Sbjct: 73  QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 208 PSCSKSFNRKDRYRMHLKLHQGVR-HTC--KECSKEFSNEYNLKNHMVLH-DVRAYVCEL 263
           P C+K + +    +MH + H G + + C  K+C + FS    LK H   H  V+ + C+ 
Sbjct: 12  PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT 71
Query: 264 CARQFTRVDHFNHHRR 279
           C R+F+R DH   H R
Sbjct: 72  CQRKFSRSDHLKTHTR 87

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 205 YSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYV 260
           Y+CP  SC + F+R D    H+++H G +   C+ C + FS   +L  H+  H   + + 
Sbjct: 5   YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 261 CELCARQFTRVDHFNHHRRL 280
           C++C R+F R D    H ++
Sbjct: 65  CDICGRKFARSDERKRHTKI 84

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 124 YPCP--ECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HA 179
           Y CP   CD+ F  +  L  H ++H G + + C  C R FS    +  H+ +H G +  A
Sbjct: 5   YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 180 CDQCDRTFSCMPYLRQHQKLH 200
           CD C R F+     ++H K+H
Sbjct: 65  CDICGRKFARSDERKRHTKIH 85

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 205 YSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYV 260
           Y+CP  SC + F++      H+++H G +   C+ C + FS   +L  H+  H   + + 
Sbjct: 5   YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 261 CELCARQFTRVDHFNHHRRL 280
           C++C R+F R D    H ++
Sbjct: 65  CDICGRKFARSDERKRHTKI 84

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 124 YPCP--ECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HA 179
           Y CP   CD+ F  ++ L  H ++H G + + C  C R FS    +  H+ +H G +  A
Sbjct: 5   YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 180 CDQCDRTFSCMPYLRQHQKLH 200
           CD C R F+     ++H K+H
Sbjct: 65  CDICGRKFARSDERKRHTKIH 85

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 205 YSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYV 260
           Y+CP  SC + F+R      H+++H G +   C+ C + FS   +L  H+  H   + + 
Sbjct: 5   YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 261 CELCARQFTRVDHFNHHRRL 280
           C++C R+F R D    H ++
Sbjct: 65  CDICGRKFARSDERKRHTKI 84

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 97  HPCPQCSRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTSGLREHRKVHAGVR-YICH 154
           H C  C + F+    LKTH++ H G+  Y C  CD     +S L +H ++H+  R + C 
Sbjct: 9   HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 155 ACPREFSSEATMKAHVASHNG 175
            CP    + + +  H+ SH G
Sbjct: 69  ICPYASRNSSQLTVHLRSHTG 89

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 207 CPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCELC 264
           C  C K F+RKD+ + H++ H GV+ + CK C    ++  +L  H+ +H D R + C++C
Sbjct: 11  CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 124 YPCP--ECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HA 179
           Y CP   CD+ F  ++ L  H ++H G + + C  C R FS    +  H+ +H G +  A
Sbjct: 5   YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 180 CDQCDRTFSCMPYLRQHQKLH 200
           CD C R F+     ++H K+H
Sbjct: 65  CDICGRKFARSDERKRHTKIH 85

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 205 YSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYV 260
           Y+CP  SC + F+R      H+++H G +   C+ C + FS   +L  H+  H   + + 
Sbjct: 5   YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 261 CELCARQFTRVDHFNHHRRL 280
           C++C R+F R D    H ++
Sbjct: 65  CDICGRKFARSDERKRHTKI 84

>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain Bound To The 5s Ribosomal Rna Gene Internal Control Region Length = 190

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 14/142 (9%)
Query: 102 CSRDFATVKILKTHLKTHEG-IIYPCPE--CDKTFLSTSGLREHRKVHAGVR-YICHA-- 155
           C   +     L+ HL  H G   +PC E  C+K F S   L  H   H G + + C +  
Sbjct: 20  CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 156 CPREFSSEATMKAHVASHNGVQ---HAC--DQCDRTFSCMPYLRQHQKLHSG-ITYSCP- 208
           C   F+++A MK H    + ++   + C  + C + F     L+ HQ  H+  + Y CP 
Sbjct: 80  CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 209 -SCSKSFNRKDRYRMHLKLHQG 229
             C K F+   R + H K+H G
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAG 161

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HACD 181
           + C  C K+F  +S L  H  +H+  R Y C  C + F  ++ MK H   H G + H C 
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 182 QCDRTFSCMPYLRQHQKLHSG 202
            C + FS    L  H + H+G
Sbjct: 62  VCGKAFSQSSNLITHSRKHTG 82

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 204 TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVC 261
           ++ C  C KSF R      HL +H   R + C+ C K F  + ++K H  +H   + + C
Sbjct: 1   SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 262 ELCARQFTRVDHFNHHRR 279
           ++C + F++  +   H R
Sbjct: 61  QVCGKAFSQSSNLITHSR 78

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 126 CPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVA----SHNGVQHAC 180
           CP C K FLS   L+ H + H G + + C  C + +  +  +  H A    + +     C
Sbjct: 10  CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 181 DQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHL-KLHQG 229
             C  TF     LR H   H+G + Y C SCS+ F +K   + H+ KLH G
Sbjct: 70  SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query: 171 ASHNGVQHACDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
           +  +GV+  C  C + F    YL+ H + H+G   + CP C K + RK+    H   +  
Sbjct: 3   SGSSGVE--CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM 60
Query: 230 VRH----TCKECSKEFSNEYNLKNHMVLHDVRA-YVCELCARQFTRVDHFNHH 277
            R     TC  C + F     L+ HMV H     Y C  C++QF +      H
Sbjct: 61  NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 155 ACPREFSSEATMKAHVASHNGVQ-HAC--DQCDRTFSCMPYLRQHQKLHSGIT-YSCPSC 210
            C + ++  + +KAH+ +H G + + C  + CD  F+    L +H + H+G   + C  C
Sbjct: 22  GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 211 SKSFNRKDRYRMHLKLHQ 228
           ++SF+R D   +H+K HQ
Sbjct: 82  NRSFSRSDHLALHMKRHQ 99

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 234 CKECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFNHHRRLQHDPEEFE 288
           CK C + F+  YNL  H   H D R Y C++C + F R DH   HR +    + F+
Sbjct: 20  CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-22
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	8e-22
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	6e-19
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	4e-18
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	5e-11
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	8e-16
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-13
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-07
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	3e-06
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	3e-15
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-11
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	7e-11
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-04
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	8e-15
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-10
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-14
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	9e-10
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-09
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	5e-09
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	7e-14
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	7e-13
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-10
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-06
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	7e-13
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-11
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-10
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-09
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	5e-04
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	4e-12
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	3e-09
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	6e-06
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	5e-12
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-11
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	8e-11
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-07
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	7e-07
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	5e-12
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-11
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-08
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	3e-06
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	6e-12
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	3e-09
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	5e-09
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	6e-05
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	5e-11
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	1e-08
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	1e-05
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	5e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	1e-10
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-10
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	5e-07
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	9e-05
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-10
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-09
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	4e-09
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-06
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	6e-05
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	3e-10
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	3e-09
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	1e-08
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	6e-05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	7e-10
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-08
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-08
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	6e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-09
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-08
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	8e-07
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	1e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	7e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-08
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-04
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-08
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	8e-08
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-05
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	7e-08
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-06
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	6e-06
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	1e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	2e-07
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	4e-07
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	9e-06
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	3e-05
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	7e-04
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	3e-07
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	1e-06
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	1e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	6e-07
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	6e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	7e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	3e-04
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	6e-07
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	7e-05
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	1e-06
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	4e-06
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	1e-04
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-04
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	3e-06
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	3e-05
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-04
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	6e-06
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	1e-05
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	4e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	7e-06
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	6e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	1e-05
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	7e-04
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	4e-05
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	4e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	7e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	7e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	4e-04
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	5e-04
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	9e-04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	8e-05
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	1e-04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	2e-04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	4e-04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	5e-04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	1e-04

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 90.6 bits (226), Expect = 3e-22
 Identities = 62/174 (35%), Positives = 88/174 (50%), Gaps = 6/174 (3%)

Query: 112 LKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAH 169
                    G   Y CPEC K+F  +  L EH++ H G + Y C  C + FS +  +  H
Sbjct: 9   SVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH 68

Query: 170 VASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLH 227
             +H G + + C +C ++FS    LR HQ+ H+G   Y+CP C KSF++    R H + H
Sbjct: 69  QRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH 128

Query: 228 QGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFNHHRR 279
            G + + C EC K FS E NL  H   H   + Y C  C + F+R D  N H+R
Sbjct: 129 TGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 89.4 bits (223), Expect = 8e-22
 Identities = 62/161 (38%), Positives = 88/161 (54%), Gaps = 5/161 (3%)

Query: 99  CPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHAC 156
           CP+C + F+    L  H +TH G   Y CPEC K+F     L  H++ H G + Y C  C
Sbjct: 24  CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83

Query: 157 PREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGI-TYSCPSCSKSF 214
            + FS  A ++AH  +H G + +AC +C ++FS + +LR HQ+ H+G   Y CP C KSF
Sbjct: 84  GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSF 143

Query: 215 NRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
           +R+D    H + H G + + C EC K FS    L  H   H
Sbjct: 144 SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 81.7 bits (203), Expect = 6e-19
 Identities = 64/197 (32%), Positives = 89/197 (45%), Gaps = 34/197 (17%)

Query: 48  LKTHLKTHEG-IIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRH--------- 97
                    G   Y CPEC K+F                     S  L  H         
Sbjct: 9   SVAQAALEPGEKPYACPECGKSF-------------------SRSDHLAEHQRTHTGEKP 49

Query: 98  -PCPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR-YICH 154
             CP+C + F+  K L  H +TH G   Y CPEC K+F   + LR H++ H G + Y C 
Sbjct: 50  YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACP 109

Query: 155 ACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSK 212
            C + FS  A ++AH  +H G + + C +C ++FS    L  HQ+ H+G   Y CP C K
Sbjct: 110 ECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGK 169

Query: 213 SFNRKDRYRMHLKLHQG 229
           SF+R+D   +H + H G
Sbjct: 170 SFSRRDALNVHQRTHTG 186

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 79.4 bits (197), Expect = 4e-18
 Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 5/153 (3%)

Query: 132 TFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSC 189
           +   +S       +  G + Y C  C + FS    +  H  +H G + + C +C ++FS 
Sbjct: 2   SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61

Query: 190 MPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNL 247
              L +HQ+ H+G   Y CP C KSF+++   R H + H G + + C EC K FS   +L
Sbjct: 62  KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121

Query: 248 KNHMVLH-DVRAYVCELCARQFTRVDHFNHHRR 279
           + H   H   + Y C  C + F+R D+ + H+R
Sbjct: 122 RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR 154

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 59.8 bits (146), Expect = 5e-11
 Identities = 49/180 (27%), Positives = 70/180 (38%), Gaps = 57/180 (31%)

Query: 35  CPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTT 93
           CP+C + F+  K L  H +TH G   Y CPEC K+F                        
Sbjct: 52  CPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSF-------------------SQRAN 92

Query: 94  LTRH----------PCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREH 142
           L  H           CP+C + F+ +  L+ H +TH G   Y CPEC K+F     L  H
Sbjct: 93  LRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH 152

Query: 143 RKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG 202
           ++ H G +      P                    + C +C ++FS    L  HQ+ H+G
Sbjct: 153 QRTHTGEK------P--------------------YKCPECGKSFSRRDALNVHQRTHTG 186

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 71.4 bits (176), Expect = 8e-16
 Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 10/116 (8%)

Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAH---VASHNGVQ-H 178
             CP C K FLS   L+ H + H G + + C  C + +  +  +  H      +   Q  
Sbjct: 8   VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67

Query: 179 ACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
            C  C  TF     LR H   H+G + Y C SCS+ F +K      L+ H    H+
Sbjct: 68  TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKK----DLQSHMIKLHS 119

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 65.2 bits (160), Expect = 1e-13
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 14/108 (12%)

Query: 180 CDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR--HT--- 233
           C  C + F    YL+ H + H+G   + CP C K + RK+    +L  H+     +    
Sbjct: 10  CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKE----NLLEHEARNCMNRSEQ 65

Query: 234 ---CKECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFNHH 277
              C  C + F     L+ HMV H     Y C  C++QF +      H
Sbjct: 66  VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 48.7 bits (117), Expect = 1e-07
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHDV----RAY 259
             CP+C K F  K   ++H + H G +   C +C K +  + NL  H   + +    + +
Sbjct: 8   VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67

Query: 260 VCELCARQFTRVDHFNHHRR 279
            C +C   F R      H  
Sbjct: 68  TCSVCQETFRRRMELRLHMV 87

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 44.4 bits (106), Expect = 3e-06
 Identities = 31/130 (23%), Positives = 46/130 (35%), Gaps = 35/130 (26%)

Query: 35  CPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTT 93
           CP C + F +   LK H + H G   + CP+C K +                        
Sbjct: 10  CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCY-------------------FRKEN 50

Query: 94  LTRH-------------PCPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGL 139
           L  H              C  C   F     L+ H+ +H G + Y C  C + F+    L
Sbjct: 51  LLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDL 110

Query: 140 REH-RKVHAG 148
           + H  K+H+G
Sbjct: 111 QSHMIKLHSG 120

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 70.8 bits (174), Expect = 3e-15
 Identities = 33/160 (20%), Positives = 57/160 (35%), Gaps = 24/160 (15%)

Query: 102 CSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREF 160
                  +K   +     E  +  P   CD+TF +   L  H  +               
Sbjct: 3   SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVG----------- 51

Query: 161 SSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG-ITYSC--PSCSKSFNRK 217
                      +H      C +  ++F     L  H ++H+G   + C  P C K F R 
Sbjct: 52  ------GPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARS 105

Query: 218 DRYRMHLKLHQGVR-HTC--KECSKEFSNEYNLKNHMVLH 254
           +  ++H + H G +   C  + C + F+N  + K HM +H
Sbjct: 106 ENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 33/141 (23%), Positives = 45/141 (31%), Gaps = 17/141 (12%)

Query: 156 CPREFSSEATMKAHVASHNG-VQHACDQCDRTFSCMPYLRQHQKLHSG----------IT 204
                       +        +      CDRTFS M  L  H  +               
Sbjct: 3   SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62

Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCK--ECSKEFSNEYNLKNHMVLH-DVRAYV 260
             CP   KSF  K +   H+++H G +   C    C K F+   NLK H   H   + + 
Sbjct: 63  EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122

Query: 261 CEL--CARQFTRVDHFNHHRR 279
           CE   C R+F        H  
Sbjct: 123 CEFEGCDRRFANSSDRKKHMH 143

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 58.5 bits (142), Expect = 7e-11
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 16/130 (12%)

Query: 89  RMSTTLTRHPCPQCSRDFATVKILKTHLKTHEG----------IIYPCPECDKTFLSTSG 138
            +       P   C R F+T+  L TH+                   CP   K+F +   
Sbjct: 18  WIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYK 77

Query: 139 LREHRKVHAGVR-YICHA--CPREFSSEATMKAHVASHNGVQ-HAC--DQCDRTFSCMPY 192
           L  H +VH G + + C    C + F+    +K H  +H G +   C  + CDR F+    
Sbjct: 78  LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSD 137

Query: 193 LRQHQKLHSG 202
            ++H  +H+ 
Sbjct: 138 RKKHMHVHTS 147

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 12/82 (14%), Positives = 21/82 (25%), Gaps = 11/82 (13%)

Query: 209 SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH----------DVR 257
           S   S     +      + +       K C + FS  + L  H+ +              
Sbjct: 2   SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61

Query: 258 AYVCELCARQFTRVDHFNHHRR 279
              C    + F       +H R
Sbjct: 62  WEECPREGKSFKAKYKLVNHIR 83

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 70.3 bits (173), Expect = 8e-15
 Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 20/173 (11%)

Query: 100 PQCSRDFATVKILKTHLKTHEG-IIYPCPE--CDKTFLSTSGLREHRKVHAGVR-YIC-- 153
             C   +     L+ HL  H G   +PC E  C+K F S   L  H   H G + + C  
Sbjct: 18  ADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS 77

Query: 154 HACPREFSSEATMKAHVASHNGVQHA-----CDQCDRTFSCMPYLRQHQKLHSG-ITYSC 207
             C   F+++A MK H    + ++        + C + F     L+ HQ  H+  + Y C
Sbjct: 78  DGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC 137

Query: 208 --PSCSKSFNRKDRYRMHLKLHQGVR----HTCKECSKEFSNEYNLKNHMVLH 254
               C K F+   R + H K+H G       +C    K ++    LK+    H
Sbjct: 138 PHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTL--YLKHVAECH 188

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 32/180 (17%), Positives = 55/180 (30%), Gaps = 40/180 (22%)

Query: 115 HLKTHEG-IIYPC--PECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHV 170
                     Y C   +C   +     L+ H   H G + + C                 
Sbjct: 3   EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKE--------------- 47

Query: 171 ASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG-ITYSC--PSCSKSFNRKDRYRMHLKLH 227
                     + C++ F+ + +L +H   H+G   ++C    C   F  K   + H    
Sbjct: 48  ----------EGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 97

Query: 228 QGVRH-----TCKECSKEFSNEYNLKNHMVLH-DVRAYVC--ELCARQFTRVDHFNHHRR 279
             ++        + C K F     LK H   H     Y C  E C ++F+       H +
Sbjct: 98  HNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 157

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 68.4 bits (168), Expect = 2e-14
 Identities = 40/170 (23%), Positives = 65/170 (38%), Gaps = 36/170 (21%)

Query: 124 YPCPECDKTFLSTSGLREH---RKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQHA 179
                C + F S   L  H     +H   + ++CH                         
Sbjct: 4   CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWG----------------------G 41

Query: 180 CDQCDRTFSCMPYLRQHQKLHSGIT-YSCPS--CSKSFNRKDRYRMHLKLHQGVR-HTCK 235
           C +  R F     L  H + H+G   + C    C KS++R +  + HL+ H G + + C+
Sbjct: 42  CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101

Query: 236 E--CSKEFSNEYNLKNHMV-LH-DVRAYVCEL--CARQFTRVDHFNHHRR 279
              CSK FSN  +   H    H + + YVC+L  C +++T       H +
Sbjct: 102 HEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 55.3 bits (134), Expect = 9e-10
 Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 23/152 (15%)

Query: 99  CPQCSRDFATVKILKTHLKTHEGII------YPCPECD-----KTFLSTSGLREHRKVHA 147
              CS++F + + L  H+ +    I      + C         + F +   L  H + H 
Sbjct: 6   WDGCSQEFDSQEQLVHHINSE--HIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63

Query: 148 GVR-YICHA--CPREFSSEATMKAHVASHNGVQ-HACDQ--CDRTFSCMPYLRQHQK-LH 200
           G + + C    C + +S    +K H+ SH G + + C+   C + FS      +HQ   H
Sbjct: 64  GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123

Query: 201 SGIT-YSC--PSCSKSFNRKDRYRMHLKLHQG 229
           S    Y C  P C+K +      R H+K   G
Sbjct: 124 SNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 35/184 (19%), Positives = 64/184 (34%), Gaps = 50/184 (27%)

Query: 35  CPQCSRDFATVKILKTHLKTHEGII------YPCPECDKTFLSTLTGTPQGARGRAVYLS 88
              CS++F + + L  H+ +    I      + C                          
Sbjct: 6   WDGCSQEFDSQEQLVHHINSE--HIHGERKEFVCHWGG---------------------- 41

Query: 89  RMSTTLTRHPCPQCSRDFATVKILKTHLKTHEG-IIYPCP--ECDKTFLSTSGLREHRKV 145
                     C +  R F    +L  H++ H G   + C    C K++     L+ H + 
Sbjct: 42  ----------CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS 91

Query: 146 HAGVR-YICH--ACPREFSSEATMKAHVA-SHNGVQ-HACD--QCDRTFSCMPYLRQHQK 198
           H G + Y+C    C + FS+ +    H   +H+  + + C    C + ++    LR+H K
Sbjct: 92  HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151

Query: 199 LHSG 202
              G
Sbjct: 152 TVHG 155

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 53.4 bits (129), Expect = 5e-09
 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 15/118 (12%)

Query: 180 CDQCDRTFSCMPYLRQH---QKLHSGIT-YSC-----PSCSKSFNRKDRYRMHLKLHQGV 230
            D C + F     L  H   + +H     + C         + F  +    +H++ H G 
Sbjct: 6   WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 65

Query: 231 R-HTCK--ECSKEFSNEYNLKNHMVLH-DVRAYVCE--LCARQFTRVDHFNHHRRLQH 282
           + H C    C K +S   NLK H+  H   + Y+CE   C++ F+       H+   H
Sbjct: 66  KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 66.0 bits (162), Expect = 7e-14
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 9/111 (8%)

Query: 178 HACDQ--CDRTFSCMPYLRQHQKLHSGIT-YSC--PSCSKSFNRKDRYRMHLKLHQGVR- 231
             C    C++ +  + +L+ H + H+G   Y C    C + F+R D+ + H + H GV+ 
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66

Query: 232 HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCEL--CARQFTRVDHFNHHRR 279
             CK C ++FS   +LK H   H   + + C    C ++F R D    H  
Sbjct: 67  FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 62.9 bits (154), Expect = 7e-13
 Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 32/138 (23%)

Query: 124 YPCPE--CDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQHAC 180
           + C    C+K +   S L+ H + H G + Y C                           
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDF------------------------- 41

Query: 181 DQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCK--E 236
             C+R FS    L++HQ+ H+G+  + C +C + F+R D  + H + H G +  +C+   
Sbjct: 42  KDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPS 101

Query: 237 CSKEFSNEYNLKNHMVLH 254
           C K+F+    L  H  +H
Sbjct: 102 CQKKFARSDELVRHHNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 7/108 (6%)

Query: 100 PQCSRDFATVKILKTHLKTHEG-IIYPC--PECDKTFLSTSGLREHRKVHAGVR-YICHA 155
           P C++ +  +  L+ H + H G   Y C   +C++ F  +  L+ H++ H GV+ + C  
Sbjct: 12  PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT 71

Query: 156 CPREFSSEATMKAHVASHNGVQ-HAC--DQCDRTFSCMPYLRQHQKLH 200
           C R+FS    +K H  +H G +  +C    C + F+    L +H  +H
Sbjct: 72  CQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 44.0 bits (105), Expect = 4e-06
 Identities = 33/127 (25%), Positives = 47/127 (37%), Gaps = 35/127 (27%)

Query: 36  PQCSRDFATVKILKTHLKTHEG-IIYPC--PECDKTFLSTLTGTPQGARGRAVYLSRMST 92
           P C++ +  +  L+ H + H G   Y C   +C++ F                     S 
Sbjct: 12  PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRF-------------------SRSD 52

Query: 93  TLTRH----------PCPQCSRDFATVKILKTHLKTHEG-IIYPC--PECDKTFLSTSGL 139
            L RH           C  C R F+    LKTH +TH G   + C  P C K F  +  L
Sbjct: 53  QLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDEL 112

Query: 140 REHRKVH 146
             H  +H
Sbjct: 113 VRHHNMH 119

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 62.1 bits (152), Expect = 7e-13
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 181 DQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECS 238
           + CDR FS    L +H ++H+G   + C  C ++F+R D    H++ H G +   C  C 
Sbjct: 10  ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69

Query: 239 KEFSNEYNLKNHMVLH 254
           ++F+     K H  +H
Sbjct: 70  RKFARSDERKRHTKIH 85

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 57.9 bits (141), Expect = 3e-11
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 205 YSCPS--CSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHDV-RAYV 260
           Y+CP   C + F++      H+++H G +   C+ C + FS   +L  H+  H   + + 
Sbjct: 5   YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64

Query: 261 CELCARQFTRVDHFNHHRR 279
           C++C R+F R D    H +
Sbjct: 65  CDICGRKFARSDERKRHTK 83

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 55.2 bits (134), Expect = 2e-10
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 124 YPCP--ECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HA 179
           Y CP   CD+ F  +  L  H ++H G + + C  C R FS    +  H+ +H G +  A
Sbjct: 5   YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64

Query: 180 CDQCDRTFSCMPYLRQHQKLHSG 202
           CD C R F+     ++H K+H  
Sbjct: 65  CDICGRKFARSDERKRHTKIHLR 87

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 53.6 bits (130), Expect = 1e-09
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 151 YICHA--CPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGIT-YS 206
           Y C    C R FS   ++  H+  H G +   C  C R FS   +L  H + H+G   ++
Sbjct: 5   YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64

Query: 207 CPSCSKSFNRKDRYRMHLKLHQG 229
           C  C + F R D  + H K+H  
Sbjct: 65  CDICGRKFARSDERKRHTKIHLR 87

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 37.4 bits (88), Expect = 5e-04
 Identities = 23/96 (23%), Positives = 28/96 (29%), Gaps = 30/96 (31%)

Query: 37  QCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLT 95
            C R F+    L  H++ H G   + C  C + F                     S  LT
Sbjct: 11  SCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNF-------------------SRSDHLT 51

Query: 96  RH----------PCPQCSRDFATVKILKTHLKTHEG 121
            H           C  C R FA     K H K H  
Sbjct: 52  THIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 60.2 bits (147), Expect = 4e-12
 Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 11/83 (13%)

Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVRHT------CKECSKEFSNEYNLKNHMVLHDVRA 258
           + C  C ++F+R D    HL  H    HT      C  C ++F+     K H  +  +  
Sbjct: 4   FQCRICMRNFSRSD----HLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDIQHILP 58

Query: 259 YVCELCARQFTRVDHFNHHRRLQ 281
            + +      ++  H  +     
Sbjct: 59  ILEDKVEELLSKNYHLENEVARL 81

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 52.1 bits (126), Expect = 3e-09
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQHACDQ 182
           + C  C + F  +  L  H + H G + + C  C R+F+     K H    + +    D+
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDK 63

Query: 183 CDRTFSCMPYLRQHQK 198
            +   S   +L     
Sbjct: 64  VEELLSKNYHLENEVA 79

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 42.9 bits (102), Expect = 6e-06
 Identities = 17/95 (17%), Positives = 23/95 (24%), Gaps = 29/95 (30%)

Query: 60  YPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRH----------PCPQCSRDFATV 109
           + C  C + F                  SR S  LT H           C  C R FA  
Sbjct: 4   FQCRICMRNF------------------SR-SDHLTTHIRTHTGEKPFACDICGRKFARS 44

Query: 110 KILKTHLKTHEGIIYPCPECDKTFLSTSGLREHRK 144
              K H      +     + ++       L     
Sbjct: 45  DERKRHRDIQHILPILEDKVEELLSKNYHLENEVA 79

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 61.0 bits (149), Expect = 5e-12
 Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 16/111 (14%)

Query: 180 CDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGVRHT------ 233
              C + F     +R+H   H    + C  C K+F         LK HQ V HT      
Sbjct: 10  HKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESS----KLKRHQLV-HTGEKPFQ 64

Query: 234 --CKECSKEFSNEYNLKNHMVLHD-VRAYVCEL--CARQFTRVDHFNHHRR 279
              + C K FS ++NL+ H+ +H   R YVC    C ++F +  +   H  
Sbjct: 65  CTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 59.1 bits (144), Expect = 2e-11
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 6/108 (5%)

Query: 153 CHACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPS-- 209
              C + F   + M+ H+ +H    H C +C + F     L++HQ +H+G   + C    
Sbjct: 10  HKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG 69

Query: 210 CSKSFNRKDRYRMHLKLHQGVR-HTC--KECSKEFSNEYNLKNHMVLH 254
           C K F+     R H+++H G R + C    C+K+F+   NLK+H++ H
Sbjct: 70  CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 57.5 bits (140), Expect = 8e-11
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 29/136 (21%)

Query: 98  PCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHAC 156
           P   C++ F     ++ HL TH   ++ C EC K F+ +S L+ H+ VH G + + C   
Sbjct: 9   PHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF- 67

Query: 157 PREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPS--CSKS 213
                                   + C + FS    LR H ++H+G   Y CP   C+K 
Sbjct: 68  ------------------------EGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKK 103

Query: 214 FNRKDRYRMHLKLHQG 229
           F +    + H+  H  
Sbjct: 104 FAQSTNLKSHILTHAK 119

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 48.3 bits (116), Expect = 2e-07
 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 204 TYSCPS--CSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAY 259
           T +CP   C+K F      R HL  H G R H C EC K F     LK H ++H   + +
Sbjct: 5   TIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPF 63

Query: 260 VCEL--CARQFTRVDHFNHHRR 279
            C    C ++F+   +   H R
Sbjct: 64  QCTFEGCGKRFSLDFNLRTHVR 85

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 46.4 bits (111), Expect = 7e-07
 Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 34/134 (25%)

Query: 30  PTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTLTGTPQGARGRAVYLSR 89
               P   C++ F     ++ HL TH   ++ C EC K F                    
Sbjct: 5   TIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAF-------------------V 45

Query: 90  MSTTLTRH------------PCPQCSRDFATVKILKTHLKTHEGII-YPCP--ECDKTFL 134
            S+ L RH                C + F+    L+TH++ H G   Y CP   C+K F 
Sbjct: 46  ESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFA 105

Query: 135 STSGLREHRKVHAG 148
            ++ L+ H   HA 
Sbjct: 106 QSTNLKSHILTHAK 119

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 60.1 bits (147), Expect = 5e-12
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCK 235
           H C+ C + FS    L+ H + H+G+  Y C +C  +         HL++H   R   C+
Sbjct: 9   HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68

Query: 236 ECSKEFSNEYNLKNHMVLH 254
            C     N   L  H+  H
Sbjct: 69  ICPYASRNSSQLTVHLRSH 87

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 58.6 bits (143), Expect = 2e-11
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HACD 181
           + C  C K F     L+ H + H GV+ Y C  C    +  +++  H+  H+  +   C 
Sbjct: 9   HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68

Query: 182 QCDRTFSCMPYLRQHQKLHSG 202
            C         L  H + H+G
Sbjct: 69  ICPYASRNSSQLTVHLRSHTG 89

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 50.1 bits (121), Expect = 2e-08
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH-DVRAYVCE 262
           + C  C K F+RKD+ + H++ H GV+ + CK C    ++  +L  H+ +H D R + C+
Sbjct: 9   HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68

Query: 263 LCARQFTRVDHFNHHRR 279
           +C            H R
Sbjct: 69  ICPYASRNSSQLTVHLR 85

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 44.0 bits (105), Expect = 3e-06
 Identities = 20/100 (20%), Positives = 26/100 (26%), Gaps = 30/100 (30%)

Query: 60  YPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRH----------PCPQCSRDFATV 109
           + C  C K F                        L  H           C  C    A  
Sbjct: 9   HKCEVCGKCF-------------------SRKDKLKTHMRCHTGVKPYKCKTCDYAAADS 49

Query: 110 KILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
             L  HL+ H     + C  C     ++S L  H + H G
Sbjct: 50  SSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTG 89

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 59.8 bits (146), Expect = 6e-12
 Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR---HT 233
            AC+ C + F  + +L +H+  HSG   YSCP C   F RKDR   H++ H G     + 
Sbjct: 8   VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67

Query: 234 CKECSKEFSNEYNLKNHM 251
           C+ C K FS   +L  H+
Sbjct: 68  CQSCGKGFSRPDHLNGHI 85

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 52.1 bits (126), Expect = 3e-09
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH---DVRAYV 260
            +C  C K F        H   H G + ++C  C   F  +  +  H+  H     + Y+
Sbjct: 8   VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67

Query: 261 CELCARQFTRVDHFNHHRRLQH 282
           C+ C + F+R DH N H +  H
Sbjct: 68  CQSCGKGFSRPDHLNGHIKQVH 89

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 51.7 bits (125), Expect = 5e-09
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ---HA 179
             C  C K F     L  H+  H+G + Y C  C   F  +  M  HV SH+G     + 
Sbjct: 8   VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67

Query: 180 CDQCDRTFSCMPYLRQH-QKLHSG 202
           C  C + FS   +L  H +++HSG
Sbjct: 68  CQSCGKGFSRPDHLNGHIKQVHSG 91

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 99  CPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR---YICH 154
           C  C + F  V  L  H  +H G   Y CP C   F     +  H + H G     YIC 
Sbjct: 10  CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69

Query: 155 ACPREFSSEATMKAH 169
           +C + FS    +  H
Sbjct: 70  SCGKGFSRPDHLNGH 84

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 40.2 bits (95), Expect = 6e-05
 Identities = 25/103 (24%), Positives = 34/103 (33%), Gaps = 33/103 (32%)

Query: 60  YPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRH----------PCPQCSRDFATV 109
             C  C K F                   R    L RH           CP C   F   
Sbjct: 8   VACEICGKIF-------------------RDVYHLNRHKLSHSGEKPYSCPVCGLRFKRK 48

Query: 110 KILKTHLKTHEGII---YPCPECDKTFLSTSGLREH-RKVHAG 148
             +  H+++H+G +   Y C  C K F     L  H ++VH+G
Sbjct: 49  DRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 57.8 bits (141), Expect = 5e-11
 Identities = 29/133 (21%), Positives = 45/133 (33%), Gaps = 41/133 (30%)

Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACDQC 183
           YPC +C K+F   S    H  +H G+R      P                      C  C
Sbjct: 11  YPC-QCGKSFTHKSQRDRHMSMHLGLR------PYG--------------------CGVC 43

Query: 184 DRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT------CKE 236
            + F    +L  H K+H+GI  Y C  C+K F  +D        H+ V  +        +
Sbjct: 44  GKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRD------SFHRHV-TSCTKSYEAAK 96

Query: 237 CSKEFSNEYNLKN 249
             +  +      +
Sbjct: 97  AEQNTTEASGPSS 109

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 50.9 bits (123), Expect = 1e-08
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 182 QCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSK 239
           QC ++F+      +H  +H G+  Y C  C K F  K     H+K+H G++ + C  C+K
Sbjct: 14  QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73

Query: 240 EFSNEYNLKNHMVLHD-VRAYVCELCARQFTR 270
            F    +   H  +    ++Y      +  T 
Sbjct: 74  RFMWRDSF--HRHVTSCTKSYEAAKAEQNTTE 103

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 42.8 bits (102), Expect = 1e-05
 Identities = 24/119 (20%), Positives = 37/119 (31%), Gaps = 30/119 (25%)

Query: 101 QCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVRYICHACPRE 159
           QC + F        H+  H G+  Y C  C K F     L  H K+H G++      P E
Sbjct: 14  QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK------PYE 67

Query: 160 FSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRK 217
                               C+ C + F        H+ + S   +Y      ++    
Sbjct: 68  --------------------CNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEA 104

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 40.9 bits (97), Expect = 5e-05
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE 262
           Y C  C KSF  K +   H+ +H G+R + C  C K+F  +++L  HM +H  ++ Y C 
Sbjct: 11  YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69

Query: 263 LCARQFTRVDHFNHH 277
           +CA++F   D F+ H
Sbjct: 70  ICAKRFMWRDSFHRH 84

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 55.9 bits (136), Expect = 1e-10
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 180 CDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKEC 237
           C  C ++F     L  H  +HS    Y C  C K F++K   + H  +H G + H C+ C
Sbjct: 4   CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63

Query: 238 SKEFSNEYNLKNHMVLH 254
            K FS   NL  H   H
Sbjct: 64  GKAFSQSSNLITHSRKH 80

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 55.5 bits (135), Expect = 2e-10
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HACD 181
           + C  C K+F  +S L  H  +H+  R Y C  C + F  ++ MK H   H G + H C 
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61

Query: 182 QCDRTFSCMPYLRQHQKLHSG 202
            C + FS    L  H + H+G
Sbjct: 62  VCGKAFSQSSNLITHSRKHTG 82

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 45.9 bits (110), Expect = 5e-07
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 204 TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVC 261
           ++ C  C KSF R      HL +H   R + C+ C K F  + ++K H  +H   + + C
Sbjct: 1   SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60

Query: 262 ELCARQFTRVDHFNHHRR 279
           ++C + F++  +   H R
Sbjct: 61  QVCGKAFSQSSNLITHSR 78

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 39.3 bits (93), Expect = 9e-05
 Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 30/100 (30%)

Query: 60  YPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRH----------PCPQCSRDFATV 109
           + C  C K+F                   + S+TL+ H          PC  C + F   
Sbjct: 2   FDCKICGKSF-------------------KRSSTLSTHLLIHSDTRPYPCQYCGKRFHQK 42

Query: 110 KILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
             +K H   H G   + C  C K F  +S L  H + H G
Sbjct: 43  SDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 56.3 bits (137), Expect = 2e-10
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 180 CDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKEC 237
           C  C R F+    L  H++ H+    Y+C  C K+F R+D  R H  +H   +   C+EC
Sbjct: 20  CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79

Query: 238 SKEFSNEYNLKNHMVLH 254
            K F     L  H  LH
Sbjct: 80  GKGFCQSRTLAVHKTLH 96

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 53.2 bits (129), Expect = 2e-09
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 137 SGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLR 194
           SG    R      + +IC  C R F+    +  H  +H   + + CD C + F    +LR
Sbjct: 3   SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLR 62

Query: 195 QHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
            H+ +HS    + C  C K F +     +H  LH  
Sbjct: 63  DHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQ 98

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 52.4 bits (127), Expect = 4e-09
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 192 YLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKN 249
                +        + C  C + F +     +H + H   R +TC  C K F  + +L++
Sbjct: 4   GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63

Query: 250 HMVLH-DVRAYVCELCARQFTRVDHFNHHRR 279
           H  +H   + + C+ C + F +      H+ 
Sbjct: 64  HRYIHSKEKPFKCQECGKGFCQSRTLAVHKT 94

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 45.1 bits (108), Expect = 2e-06
 Identities = 27/123 (21%), Positives = 38/123 (30%), Gaps = 37/123 (30%)

Query: 91  STTLTRH----------PCPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGL 139
           S+  +             C  C R F     L  H +TH     Y C  C K F     L
Sbjct: 2   SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61

Query: 140 REHRKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKL 199
           R+HR +H+  +      P +                    C +C + F     L  H+ L
Sbjct: 62  RDHRYIHSKEK------PFK--------------------CQECGKGFCQSRTLAVHKTL 95

Query: 200 HSG 202
           H  
Sbjct: 96  HMQ 98

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 40.5 bits (96), Expect = 6e-05
 Identities = 20/113 (17%), Positives = 29/113 (25%), Gaps = 31/113 (27%)

Query: 48  LKTHLKTHEGII-YPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRH--------- 97
                   +    + C  C + F                     S  L  H         
Sbjct: 5   SSGGRLPSKTKKEFICKFCGRHF-------------------TKSYNLLIHERTHTDERP 45

Query: 98  -PCPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAG 148
             C  C + F     L+ H   H     + C EC K F  +  L  H+ +H  
Sbjct: 46  YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQ 98

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 55.3 bits (134), Expect = 3e-10
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 7/98 (7%)

Query: 186 TFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTC--KECSKEFS 242
           +        + +++H       P C+K + +    + HL+ H G + + C  + C   F+
Sbjct: 2   SSGSSGPDLEKRRIHYC---DYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFA 58

Query: 243 NEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFNHHRR 279
               L  H   H   + + C +C R F+R DH   H +
Sbjct: 59  RSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 52.6 bits (127), Expect = 3e-09
 Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 30/119 (25%)

Query: 112 LKTHLKTHEGIIYPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHV 170
                + H       P C K +  +S L+ H + H G + Y C                 
Sbjct: 9   DLEKRRIHYC---DYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTW--------------- 50

Query: 171 ASHNGVQHACDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQ 228
                     + CD  F+    L +H + H+G   + C  C++SF+R D   +H+K HQ
Sbjct: 51  ----------EGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 160 FSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSGIT-YSC--PSCSKSFNR 216
             S          H         C + ++   +L+ H + H+G   Y C    C   F R
Sbjct: 3   SGSSGPDLEKRRIHYC---DYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFAR 59

Query: 217 KDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
            D    H + H G +   C  C++ FS   +L  HM  H
Sbjct: 60  SDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 21/112 (18%), Positives = 30/112 (26%), Gaps = 35/112 (31%)

Query: 48  LKTHLKTHEGIIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRH---------- 97
                + H       P C K +                     S+ L  H          
Sbjct: 9   DLEKRRIHYC---DYPGCTKVY-------------------TKSSHLKAHLRTHTGEKPY 46

Query: 98  --PCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVH 146
                 C   FA    L  H + H G   + C  C+++F  +  L  H K H
Sbjct: 47  KCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 54.1 bits (131), Expect = 7e-10
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 28/112 (25%)

Query: 119 HEGI-IYPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGV 176
                      C KT+  +S L+ H + H G + Y C                       
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDW--------------------- 40

Query: 177 QHACDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLH 227
               D C   F+    L +H + H+G   + C  C ++F+R D   +H+K H
Sbjct: 41  ----DGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 50.6 bits (122), Expect = 1e-08
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 180 CDQCDRTFSCMPYLRQHQKLHSGIT-YSC--PSCSKSFNRKDRYRMHLKLHQGVR-HTCK 235
              C +T++   +L+ H + H+G   Y C    C   F R D    H + H G R   C+
Sbjct: 10  YAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ 69

Query: 236 ECSKEFSNEYNLKNHMVLH 254
           +C + FS   +L  HM  H
Sbjct: 70  KCDRAFSRSDHLALHMKRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 50.2 bits (121), Expect = 1e-08
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCK--ECSKEFSNEYNLKNHMVLH-DVRAYV 260
                C K++ +    + HL+ H G + + C    C  +F+    L  H   H   R + 
Sbjct: 8   CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67

Query: 261 CELCARQFTRVDHFNHHRR 279
           C+ C R F+R DH   H +
Sbjct: 68  CQKCDRAFSRSDHLALHMK 86

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 37.1 bits (87), Expect = 6e-04
 Identities = 25/119 (21%), Positives = 34/119 (28%), Gaps = 41/119 (34%)

Query: 32  RHPCPQCSRDFATVKILKTHLKTHEGII-YPC--PECDKTFLSTLTGTPQGARGRAVYLS 88
                 C + +     LK HL+TH G   Y C    C   F                  +
Sbjct: 7   TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKF------------------A 48

Query: 89  RMSTTLTRHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVH 146
           R                      L  H + H G   + C +CD+ F  +  L  H K H
Sbjct: 49  RSDE-------------------LTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 52.5 bits (127), Expect = 2e-09
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGIT-----YSCPSCSKSFNRKDRYRMHLKLHQGVR- 231
           +AC  CD+TF     L  H K +         + C  C K+F R++    H     G   
Sbjct: 16  YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75

Query: 232 HTCKECSKEF 241
              +      
Sbjct: 76  VEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 49.4 bits (119), Expect = 2e-08
 Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 24/105 (22%)

Query: 112 LKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHV 170
             +  +TH G   Y C  CDKTF     L  H K +                     A V
Sbjct: 3   SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD-------------PNFVPAAFV 49

Query: 171 ASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSF 214
                    C +C +TF+    + +H    +G       +   S 
Sbjct: 50  ---------CSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 45.2 bits (108), Expect = 8e-07
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 193 LRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-----HTCKECSKEFSNEYN 246
                + H+G   Y+C  C K+F +K    MH K +           C +C K F+    
Sbjct: 3   SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62

Query: 247 LKNHMVLH 254
           +  H    
Sbjct: 63  MARHADNC 70

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 16/68 (23%), Positives = 21/68 (30%), Gaps = 12/68 (17%)

Query: 223 HLKLHQGVRHT------CKECSKEFSNEYNLKNHMVLH-----DVRAYVCELCARQFTRV 271
                    HT      C  C K F  +  L  H   +        A+VC  C + FTR 
Sbjct: 2   SSGSSGRT-HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60

Query: 272 DHFNHHRR 279
           +    H  
Sbjct: 61  NTMARHAD 68

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 37.1 bits (87), Expect = 7e-04
 Identities = 22/118 (18%), Positives = 30/118 (25%), Gaps = 40/118 (33%)

Query: 48  LKTHLKTHEG-IIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSRDF 106
             +  +TH G   Y C  CDKTF                   R    L  H         
Sbjct: 3   SGSSGRTHTGEKPYACSHCDKTF-------------------RQKQLLDMH--------- 34

Query: 107 ATVKILKTHLKTHEGII---YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREF 160
                 K +       +   + C +C KTF   + +  H    AG             
Sbjct: 35  -----FKRY--HDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 4/61 (6%)

Query: 232 HTCKECSKEFSNEYNLKNHMVLHDVRA----YVCELCARQFTRVDHFNHHRRLQHDPEEF 287
             C+ C      + +L  H   H        + CE C ++F + D    HR   H     
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 288 E 288
            
Sbjct: 68  A 68

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 4/54 (7%)

Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR----HTCKECSKEFSNEYNLKNHMVLH 254
             C  C  +  +K     H + H          C+ C K F    ++  H    
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 13/66 (19%), Positives = 18/66 (27%), Gaps = 5/66 (7%)

Query: 97  HPCPQCSRDFATVKILKTHLKTHEGII----YPCPECDKTFLSTSGLREH-RKVHAGVRY 151
             C  C         L  H + H   +    +PC  C K F     +  H  K H  +  
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 152 ICHACP 157
                 
Sbjct: 68  APQESS 73

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 4/67 (5%)

Query: 151 YICHACPREFSSEATMKAHVASHNGVQ----HACDQCDRTFSCMPYLRQHQKLHSGITYS 206
             C  C      +A++  H   H          C+ C + F     +  H+         
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 207 CPSCSKS 213
            P  S  
Sbjct: 68  APQESSG 74

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR----YICHACPREFSSEATMKAHVASHNGVQHA 179
             C  C  T    + L  H++ HA       + C  C + F    ++ AH +  +     
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 180 CDQC 183
             Q 
Sbjct: 68  APQE 71

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 49.4 bits (119), Expect = 2e-08
 Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 10/69 (14%)

Query: 223 HLKLHQGVRHT------CKECSKEFSNEYNLKNHMVLH---DVRAYVCELCARQFTRVDH 273
                    H+      C  C   F+    +K H++     +V  + C  C     R   
Sbjct: 2   SSGSSGRT-HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60

Query: 274 FNHHRRLQH 282
              H R QH
Sbjct: 61  LGVHLRKQH 69

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 47.9 bits (115), Expect = 8e-08
 Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 7/57 (12%)

Query: 180 CDQCDRTFSCMPYLRQHQKLHSGIT---YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
           C  C   F+    ++ H           + CP C     RK      L +H   +H+
Sbjct: 18  CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKS----DLGVHLRKQHS 70

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 4/54 (7%)

Query: 99  CPQCSRDFATVKILKTHLKTHEGII---YPCPECDKTFLSTSGLREH-RKVHAG 148
           C  C   F     +K H+          + CP CD      S L  H RK H+ 
Sbjct: 18  CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 4/63 (6%)

Query: 112 LKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR---YICHACPREFSSEATMK 167
             +  +TH G   Y C  C   F  +  ++ H           + C  C    + ++ + 
Sbjct: 3   SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62

Query: 168 AHV 170
            H+
Sbjct: 63  VHL 65

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 47.8 bits (115), Expect = 7e-08
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 192 YLRQHQKLHSGI-TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKN 249
           +   H  +      Y C  C  SF  K     H  +H G + + C  C  +F+   NLK 
Sbjct: 4   HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63

Query: 250 HMVLH 254
           H  +H
Sbjct: 64  HTRIH 68

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 43.6 bits (104), Expect = 2e-06
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 180 CDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
           CD+C  +F     L  H+ +H+G   Y C  C   FNR    + H ++H G
Sbjct: 20  CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 42.4 bits (101), Expect = 6e-06
 Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 27/92 (29%)

Query: 112 LKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHV 170
              H         Y C  C  +F     L  H+ VH G +      P             
Sbjct: 5   HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEK------P------------- 45

Query: 171 ASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG 202
                  + C+ C   F+    L+ H ++HSG
Sbjct: 46  -------YRCNICGAQFNRPANLKTHTRIHSG 70

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 223 HLKLHQGVRHT------CKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFN 275
           H   H  +         C  C   F  + NL +H  +H   + Y C +C  QF R  +  
Sbjct: 4   HHHHHSHM-THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62

Query: 276 HHRR 279
            H R
Sbjct: 63  THTR 66

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 47.6 bits (112), Expect = 2e-07
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 95  TRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLSTSGLREHRKVHAGVRYICH 154
             + C  C+   +++    +H +        CP C   F S    +EH       +  C 
Sbjct: 15  EVYQCRLCNAKLSSLLEQGSHERLCRNA-AVCPYCSLRFFSPELKQEHESKCEYKKLTCL 73

Query: 155 ACPREFSSEATMKAHVAS 172
            C R F S  ++  H   
Sbjct: 74  ECMRTFKSSFSIWRHQVE 91

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 46.8 bits (110), Expect = 4e-07
 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 1/88 (1%)

Query: 196 HQKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVLHD 255
              + +   Y C  C+   +       H +L +     C  CS  F +    + H    +
Sbjct: 8   ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR-NAAVCPYCSLRFFSPELKQEHESKCE 66

Query: 256 VRAYVCELCARQFTRVDHFNHHRRLQHD 283
            +   C  C R F        H+   H+
Sbjct: 67  YKKLTCLECMRTFKSSFSIWRHQVEVHN 94

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 43.0 bits (100), Expect = 9e-06
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 1/84 (1%)

Query: 115 HLKTHEGIIYPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHVASHN 174
                   +Y C  C+    S      H ++      +C  C   F S    + H +   
Sbjct: 8   ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR-NAAVCPYCSLRFFSPELKQEHESKCE 66

Query: 175 GVQHACDQCDRTFSCMPYLRQHQK 198
             +  C +C RTF     + +HQ 
Sbjct: 67  YKKLTCLECMRTFKSSFSIWRHQV 90

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 19/99 (19%), Positives = 29/99 (29%), Gaps = 5/99 (5%)

Query: 135 STSGLREHRKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLR 194
            +SG      V     Y C  C  + SS     +H          C  C   F      +
Sbjct: 1   GSSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR-NAAVCPYCSLRFFSPELKQ 59

Query: 195 QHQKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
           +H+        +C  C ++F         +  HQ   H 
Sbjct: 60  EHESKCEYKKLTCLECMRTFK----SSFSIWRHQVEVHN 94

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 37.6 bits (86), Expect = 7e-04
 Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 11/94 (11%)

Query: 51  HLKTHEGIIYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSRDFATVK 110
                   +Y C  C+    S L              S          CP CS  F + +
Sbjct: 8   ASPVENKEVYQCRLCNAKLSSLLE-----------QGSHERLCRNAAVCPYCSLRFFSPE 56

Query: 111 ILKTHLKTHEGIIYPCPECDKTFLSTSGLREHRK 144
           + + H    E     C EC +TF S+  +  H+ 
Sbjct: 57  LKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQV 90

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 46.3 bits (111), Expect = 3e-07
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 193 LRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNH 250
                 +HSG   Y C  C K+F+R      H ++H G + + C EC K FS    L NH
Sbjct: 2   SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61

Query: 251 MVLH 254
             +H
Sbjct: 62  QRIH 65

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 138 GLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQ 195
           G      +H+G + Y C  C + FS  + +  H   H G + + C +C + FS    L  
Sbjct: 1   GSSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLIN 60

Query: 196 HQKLHSG 202
           HQ++H+ 
Sbjct: 61  HQRIHTS 67

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 180 CDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQG 229
           C +C + FS    L QHQ++H+G   Y C  C K+F++      H ++H  
Sbjct: 17  CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 45.2 bits (108), Expect = 6e-07
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 232 HTCKECSKEFSNEYNLKNHMVLHD---VRAYVCELCARQFTRVDHFNHHRRLQH 282
           + CK CS+ +++  N   H V      V+ Y C  C ++FTR D+   H ++ H
Sbjct: 11  YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 180 CDQCDRTFSCMPYLRQHQ--KLHSGI-TYSCPSCSKSFNRKDRYRMHLKLHQGV 230
           C  C R ++ +    +H        +  Y CP C K F RKD    H+K+   +
Sbjct: 13  CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 42.2 bits (100), Expect = 6e-06
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 205 YSCPSCSKSFNRKDRYRMHL--KLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
           Y C  CS+ +     +  H      + V+ + C  C KEF+ + N+  H+ + 
Sbjct: 11  YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 39.1 bits (92), Expect = 7e-05
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 99  CPQCSRDFATVKILKTHLKT--HEGII-YPCPECDKTFLSTSGLREHRKVHAGV 149
           C  CSR +  +     H  T     +  YPCP C K F     +  H K+   +
Sbjct: 13  CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 151 YICHACPREFSSEATMKAH--VASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSGI 203
           Y C  C R ++  +    H   +    V+ + C  C + F+    +  H K+   I
Sbjct: 11  YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 45.7 bits (109), Expect = 6e-07
 Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 98  PCPQCSRDFATVKILKTHLKTHEGI-IYPC--PECDKTFLSTSGLREHRKVHAGVR-YIC 153
               C + F     LK H  +H     Y C    CDK F   S L+ H KVHAG      
Sbjct: 5   HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64

Query: 154 HACPREFSSEATMKAHV 170
            +C     +      HV
Sbjct: 65  DSCSFVGKTWTLYLKHV 81

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 206 SCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKE--CSKEFSNEYNLKNHMVLHD-VRAYVC 261
              +C K+F + ++ ++H   H     + C    C K FS    LK H  +H        
Sbjct: 5   HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64

Query: 262 ELCARQFTRVDHFNHHRRLQH 282
           + C+        +  H    H
Sbjct: 65  DSCSFVGKTWTLYLKHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 39.9 bits (94), Expect = 7e-05
 Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 29/107 (27%)

Query: 123 IYPC--PECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQHA 179
           +Y C    C K F   + L+ H+  H     Y C                   H G    
Sbjct: 1   MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC------------------PHEG---- 38

Query: 180 CDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLK 225
              CD+ FS    L++H+K+H+G       SCS        Y  H+ 
Sbjct: 39  ---CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 180 CDQCDRTFSCMPYLRQHQKL-HSGI-TYSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTC 234
              C R FS   YL  H+K  H    ++SCP  +C KSFN K   + H+KLH   R + C
Sbjct: 12  FPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71

Query: 235 KECSKEF 241
           +      
Sbjct: 72  EFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 42.9 bits (102), Expect = 4e-06
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 15/75 (20%)

Query: 205 YSC--PSCSKSFNRKDRYRMHLKLHQGVRHT------CKE--CSKEFSNEYNLKNHMVLH 254
             C  P C + F+ +     +L  H+  +H       C E  C K F+ + +LK HM LH
Sbjct: 8   MPCDFPGCGRIFSNRQ----YLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63

Query: 255 -DVRAYVCELCARQF 268
            D R Y+CE      
Sbjct: 64  SDTRDYICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 98  PCPQCSRDFATVKILKTHLK-THEGII-YPCPE--CDKTFLSTSGLREHRKVHAGVR-YI 152
             P C R F+  + L  H K  H     + CPE  C K+F     L+EH K+H+  R YI
Sbjct: 11  DFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYI 70

Query: 153 CHACPREF 160
           C       
Sbjct: 71  CEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 30/96 (31%)

Query: 124 YPC--PECDKTFLSTSGLREH-RKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQHA 179
            PC  P C + F +   L  H +  H   + + C                          
Sbjct: 8   MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPE------------------------ 43

Query: 180 CDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSF 214
              C ++F+   +L++H KLHS    Y C     S 
Sbjct: 44  -PACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 44.4 bits (104), Expect = 3e-06
 Identities = 13/102 (12%), Positives = 28/102 (27%), Gaps = 8/102 (7%)

Query: 135 STSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYL 193
           S S  + +  +  G   + C  C   + +   +  H+      +    + D         
Sbjct: 3   SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62

Query: 194 RQHQKLHSGIT-------YSCPSCSKSFNRKDRYRMHLKLHQ 228
            + + L              C  C  SF       +H+   +
Sbjct: 63  PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 41.7 bits (97), Expect = 3e-05
 Identities = 12/93 (12%), Positives = 29/93 (31%), Gaps = 8/93 (8%)

Query: 193 LRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHM 251
            + +  + +G + + C  CS +++      +H+      R    E        ++     
Sbjct: 7   GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66

Query: 252 VLHD-------VRAYVCELCARQFTRVDHFNHH 277
            L +        +   C  C   F  +   + H
Sbjct: 67  SLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 13/93 (13%), Positives = 22/93 (23%), Gaps = 8/93 (8%)

Query: 112 LKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHV 170
            K +     G   + C +C   + +   L  H       R   H          +     
Sbjct: 7   GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66

Query: 171 ASHNGVQ-------HACDQCDRTFSCMPYLRQH 196
           +               C  C  +F  +  L  H
Sbjct: 67  SLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 42.4 bits (101), Expect = 6e-06
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 193 LRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNH 250
             + +        Y C  C KSF+       H + H G + + C EC K F    +L  H
Sbjct: 6   SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65

Query: 251 MVLH 254
             +H
Sbjct: 66  HRVH 69

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 180 CDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
           CD+C ++FS    L +H++ H+G   Y C  C K+F +    R HL  H  V HT
Sbjct: 21  CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ----RSHLIGHHRV-HT 70

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 40.1 bits (95), Expect = 4e-05
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 27/92 (29%)

Query: 112 LKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHV 170
                        Y C EC K+F  +S L +HR+ H G +      P +           
Sbjct: 6   SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEK------PYK----------- 48

Query: 171 ASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG 202
                    CD+C + F    +L  H ++H+G
Sbjct: 49  ---------CDECGKAFIQRSHLIGHHRVHTG 71

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 42.1 bits (100), Expect = 7e-06
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
             C  CS S + K   R+H ++H   R   C  CS +     NL  HM   
Sbjct: 10  EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 180 CDQCDRTFSCMPYLRQHQKLHSGI-TYSCPSCSKSFNRKDRYRMHLKLHQG 229
           C +C  + S    LR H+++H     + C  CS    +      H+K   G
Sbjct: 12  CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 39.4 bits (93), Expect = 6e-05
 Identities = 16/79 (20%), Positives = 22/79 (27%), Gaps = 26/79 (32%)

Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACDQC 183
             C EC  +  S + LR H ++H   R      P                      C+ C
Sbjct: 10  EKCSECSYSCSSKAALRIHERIHCTDR------P--------------------FKCNYC 43

Query: 184 DRTFSCMPYLRQHQKLHSG 202
                    L +H K   G
Sbjct: 44  SFDTKQPSNLSKHMKKFHG 62

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 99  CPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAG 148
           C +CS   ++   L+ H + H     + C  C       S L +H K   G
Sbjct: 12  CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 178 HACDQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
             C+ C R F+   +L++H + H+    Y C  C+++F R+D     L  H    H+
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRD----LLIRHAQKIHS 55

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 36.3 bits (85), Expect = 7e-04
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 27/80 (33%)

Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHVASHNGVQHACDQC 183
           + C  C + F     L+ H + H   +      P                    + C  C
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEK------P--------------------YPCGLC 36

Query: 184 DRTFSCMPYLRQH-QKLHSG 202
           +R F+    L +H QK+HSG
Sbjct: 37  NRAFTRRDLLIRHAQKIHSG 56

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 41.8 bits (97), Expect = 4e-05
 Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 5/122 (4%)

Query: 112 LKTHLKTHEGIIYPCPECDKTFLSTSGLREHRK-VHAGVRYICHACPREFSSEATMKAHV 170
            K +L  H+GI        +       L   +K +   +       P+     + +   +
Sbjct: 10  SKKYLSNHKGIF--IHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL 67

Query: 171 ASHNGVQHACDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHL-KLHQG 229
           AS    Q  C  C   FS    L+QH +     T  CP C K F   D    H+ K H  
Sbjct: 68  ASKAISQFVCPLCLMPFSSSVSLKQHIRYTEH-TKVCPVCKKEFTSTDSALDHVCKKHNI 126

Query: 230 VR 231
             
Sbjct: 127 CV 128

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 41.5 bits (96), Expect = 4e-05
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 1/86 (1%)

Query: 197 QKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVLHDV 256
           ++L   I  +     +  +        L      +  C  C   FS+  +LK H+   + 
Sbjct: 40  KRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE- 98

Query: 257 RAYVCELCARQFTRVDHFNHHRRLQH 282
              VC +C ++FT  D    H   +H
Sbjct: 99  HTKVCPVCKKEFTSTDSALDHVCKKH 124

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 187 FSCMPYLRQHQKLHSGITYSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSN 243
              M  L  +        Y+CP  SC + F+R D    H+++H G +   C+ C + FS 
Sbjct: 3   PHPMNNLLNYVVPKMR-PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR 61

Query: 244 EYNLKNHMVLH 254
             +L  H+  H
Sbjct: 62  SDHLTTHIRTH 72

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 211 SKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFT 269
               N  +     ++ +       + C + FS    L  H+ +H   + + C +C R F+
Sbjct: 4   HPMNNLLNYVVPKMRPY---ACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60

Query: 270 RVDHFNHHRR 279
           R DH   H R
Sbjct: 61  RSDHLTTHIR 70

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 181 DQCDRTFSCMPYLRQHQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT 233
           + CDR FS    L +H ++H+G   + C  C ++F+R D    HL  H    HT
Sbjct: 25  ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD----HLTTHIR-THT 73

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 98  PCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVH 146
           P   C R F+    L  H++ H G   + C  C + F  +  L  H + H
Sbjct: 23  PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 36.5 bits (85), Expect = 9e-04
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 112 LKTHLKTHEGIIYPCP--ECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKA 168
           L  ++       Y CP   CD+ F  +  L  H ++H G + + C  C R FS    +  
Sbjct: 9   LLNYVVPKMRP-YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67

Query: 169 HVASH 173
           H+ +H
Sbjct: 68  HIRTH 72

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 38.9 bits (90), Expect = 8e-05
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 150 RYICHACPREFSSEATMKAHVASHNGVQ-HACDQCDRTFSCMPYLRQHQKLHSG 202
           +YIC  C       + +K H+ +H  V+ + C  C+ +F     L +H K  + 
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 124 YPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNG 175
           Y C EC       S L++H + H  VR Y C  C   F ++  +  H+ S   
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH 254
           Y C  C     +    + H++ H  VR + C  C+  F  + NL  HM   
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 37.0 bits (85), Expect = 4e-04
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 96  RHPCPQCSRDFATVKILKTHLKTHEGII-YPCPECDKTFLSTSGLREHRKVHAG 148
           ++ C +C        +LK H++TH  +  Y C  C+ +F +   L +H K  A 
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 36.6 bits (84), Expect = 5e-04
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 231 RHTCKECSKEFSNEYNLKNHMVLH-DVRAYVCELCARQFTRVDHFNHHRR 279
           ++ C+EC         LK H+  H DVR Y C  C   F    +   H +
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 11/55 (20%)

Query: 196 HQKLHSGIT-YSCPSCSKSFNRKDRYRMHLKLHQGVRHT------CKECSKEFSN 243
                S    Y C SC K F+R D    HL  H    HT      C+      S+
Sbjct: 3   SGSSGSVGKPYICQSCGKGFSRPD----HLNGHIKQVHTSERPHKCQVWVSGPSS 53

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.97
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.97
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.93
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.92
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.89
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.88
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.88
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.87
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.85
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.85
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.85
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.84
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.84
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.84
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.8
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.78
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.78
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.77
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.76
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.76
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.73
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.72
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.71
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.7
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.7
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.69
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.68
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.68
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.67
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.67
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.67
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.66
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.65
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.65
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.64
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.62
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.6
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.6
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.57
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.57
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.56
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.55
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.54
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.52
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.52
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.52
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.48
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.46
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.46
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.46
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.46
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.45
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.43
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.42
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.42
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.42
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.41
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.41
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.4
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.4
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.4
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.38
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.37
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.35
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.32
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.32
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.32
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.31
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.3
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.3
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.29
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.28
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.26
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.25
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.23
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.23
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.22
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.19
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.15
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.12
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.12
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.05
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.02
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.01
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.99
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.99
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.97
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.96
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.96
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.96
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.96
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.96
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.95
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.95
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.95
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.95
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.95
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.95
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.95
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.95
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.95
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.95
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.95
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.94
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.94
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.94
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.94
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.94
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.94
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.94
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.94
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.94
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.94
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.94
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.94
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.93
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.93
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.93
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.93
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.93
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.92
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.92
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.92
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.91
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.91
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.91
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.91
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.91
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.91
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.91
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.91
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.9
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.9
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.9
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.9
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.9
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.9
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.9
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.9
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.9
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.9
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.9
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.9
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.9
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.9
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.9
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.89
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.89
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.89
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.89
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.89
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.89
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.89
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.89
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.89
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.89
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.89
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.89
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.89
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.89
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.89
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.88
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.88
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.88
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.88
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.88
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.88
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.88
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.88
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.88
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.88
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.88
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.88
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.88
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.88
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.88
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.88
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.88
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.88
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.88
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.87
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.87
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.87
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.87
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.87
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.87
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.87
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.87
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.87
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.87
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.87
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.86
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.86
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.86
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.86
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.86
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.86
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.86
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.86
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.85
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.85
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.85
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.85
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.85
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.85
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.85
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.84
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.84
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.84
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.84
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.83
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.83
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.82
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.82
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.82
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.81
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.81
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.8
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.79
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.79
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.79
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.78
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.78
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.78
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.78
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.78
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.77
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.77
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.77
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.76
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.76
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.76
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.76
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.76
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.76
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.76
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.76
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.76
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.76
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.75
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.75
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.75
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.75
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.74
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.74
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.73
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.73
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.73
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.73
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.72
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.71
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.71
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.71
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.71
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.7
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.69
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.68
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.68
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.68
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.67
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.67
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.67
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.67
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.67
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.66
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.66
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.66
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.65
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.65
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.61
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.6
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.6
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.59
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.58
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.58
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.58
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.58
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.57
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.57
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.55
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.55
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.53
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.52
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.51
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.51
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.49
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.44
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.44
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.41
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.33
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.33
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.32
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.31
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.31
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.31
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.3
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.3
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.29
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.29
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.28
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.28
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.59
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.26
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.26
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.25
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.25
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.24
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.24
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.55
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.24
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.23
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.23
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.23
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.22
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.21
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.21
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.21
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.2
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.19
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.18
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.16
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.15
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.14
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.41
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.11
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.11
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.1
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.1
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.1
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.1
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.09
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.09
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.09
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.07
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.07
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.06
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.06
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.05
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.04
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.04
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.04
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.02
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.01
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.01
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.01
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.01
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.99
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.97
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.97
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.2
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.93
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.9
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.1
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.86
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.85
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.06
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.81
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.79
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.76
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.73
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.68
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.99
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.9
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.55
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.91
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.67
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.47
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.44
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.41
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	94.06
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	93.72
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	93.36
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	91.74
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	90.1
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.62
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	86.7
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	85.62
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	82.79
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	82.63
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	81.34
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	80.78

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=2.5e-37  Score=239.29  Aligned_cols=178  Identities=35%  Similarity=0.724  Sum_probs=131.8

Q ss_pred             HHHHHHHhhccCc-ccCCcccccccCChHhHHHHHhhhCCCC-ccCCCCCcccCCHHHHHHHHHhhcCC-CcccCcchhc
Q psy6546         110 KILKTHLKTHEGI-IYPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAHVASHNGV-QHACDQCDRT  186 (294)
Q Consensus       110 ~~l~~H~~~~~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~~~~~-~~~C~~C~~~  186 (294)
                      ..|..|++.+.+. +|.|..|++.|.....|..|++.|.+++ |.|+.|++.|.....|..|+..|+++ +|.|+.|++.
T Consensus         7 ~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   86 (190)
T 2i13_A            7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKS   86 (190)
T ss_dssp             ------------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCE
T ss_pred             ccchhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCc
Confidence            4566677777664 7888888888888888888888887765 88888888888888888888888775 7888889988


Q ss_pred             cCCchHHHhHHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHHHHHhhhc-cccccccc
Q psy6546         187 FSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCEL  263 (294)
Q Consensus       187 f~~~~~l~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~  263 (294)
                      |.....|..|++.|.+ ++|.|+.|++.|.+...|..|+++|++++ |.|..|++.|.....|..|+++|. +++|.|++
T Consensus        87 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  166 (190)
T 2i13_A           87 FSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPE  166 (190)
T ss_dssp             ESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTT
T ss_pred             cCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCC
Confidence            8888889999888876 48999999999999999999999998866 999999999999999999999996 88999999


Q ss_pred             ccccccchhhhhhhhhhccCcccc
Q psy6546         264 CARQFTRVDHFNHHRRLQHDPEEF  287 (294)
Q Consensus       264 C~~~f~~~~~l~~H~~~~h~~~~~  287 (294)
                      |++.|.+...|..|+++|+++++|
T Consensus       167 C~~~f~~~~~L~~H~~~H~~~k~~  190 (190)
T 2i13_A          167 CGKSFSRRDALNVHQRTHTGKKTS  190 (190)
T ss_dssp             TCCEESSHHHHHHHHTTC------
T ss_pred             CCCccCCHHHHHHHHHhcCCCCCC
Confidence            999999999999999999999875

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=3.4e-35  Score=227.23  Aligned_cols=175  Identities=36%  Similarity=0.758  Sum_probs=140.7

Q ss_pred             hhhcccCCCCCcccCCccCccccChHHHHHHHhhccCc-ccCCcccccccCChHhHHHHHhhhCCCC-ccCCCCCcccCC
Q psy6546          85 VYLSRMSTTLTRHPCPQCSRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSS  162 (294)
Q Consensus        85 ~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~  162 (294)
                      ..+...+.+.++|.|+.|++.|.+...|..|++.|.+. +|.|..|++.|.+...|..|++.|.+++ |.|+.|++.|..
T Consensus        10 ~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   89 (190)
T 2i13_A           10 VAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQ   89 (190)
T ss_dssp             ---------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESC
T ss_pred             hhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCC
Confidence            34445667788999999999999999999999999874 9999999999999999999999998876 999999999999


Q ss_pred             HHHHHHHHHhhcCC-CcccCcchhccCCchHHHhHHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccc
Q psy6546         163 EATMKAHVASHNGV-QHACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSK  239 (294)
Q Consensus       163 ~~~l~~H~~~~~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~  239 (294)
                      ...|..|+..|+++ +|.|++|++.|.....|..|++.|++ ++|.|+.|++.|.+...|..|+++|++++ |.|..|++
T Consensus        90 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~  169 (190)
T 2i13_A           90 RANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGK  169 (190)
T ss_dssp             HHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCC
T ss_pred             HHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCC
Confidence            99999999999876 89999999999999999999999987 59999999999999999999999998876 99999999


Q ss_pred             cccCHHHHHHHHhhhc-cccc
Q psy6546         240 EFSNEYNLKNHMVLHD-VRAY  259 (294)
Q Consensus       240 ~f~~~~~l~~H~~~h~-~~~~  259 (294)
                      .|.....|..|+++|. ++||
T Consensus       170 ~f~~~~~L~~H~~~H~~~k~~  190 (190)
T 2i13_A          170 SFSRRDALNVHQRTHTGKKTS  190 (190)
T ss_dssp             EESSHHHHHHHHTTC------
T ss_pred             ccCCHHHHHHHHHhcCCCCCC
Confidence            9999999999999996 6665

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.97  E-value=1.2e-30  Score=201.63  Aligned_cols=164  Identities=29%  Similarity=0.580  Sum_probs=106.8

Q ss_pred             CCCcccC--CccCccccChHHHHHHHhhccCc-ccCC--cccccccCChHhHHHHHhhhCCCC-ccCC--CCCcccCCHH
Q psy6546          93 TLTRHPC--PQCSRDFATVKILKTHLKTHEGI-IYPC--PECDKTFLSTSGLREHRKVHAGVR-YICH--ACPREFSSEA  164 (294)
Q Consensus        93 ~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~-~~~C--~~C~~~f~~~~~l~~H~~~h~~~~-~~C~--~C~~~f~~~~  164 (294)
                      ..++|.|  ..|++.|.+...|..|++.|.+. +|.|  ..|++.|.....|..|++.|.+++ |.|.  .|++.|.+..
T Consensus         9 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~   88 (190)
T 1tf6_A            9 VYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKA   88 (190)
T ss_dssp             -CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHH
T ss_pred             CCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHH
Confidence            3456666  46666666666666666666553 6666  556666666666666666555543 5555  4555555555


Q ss_pred             HHHHHHHhhcCCCcccCcchhccCCchHHHhHHhhcC--CCceeC--CCCccccCCHHHHHHHHHHhCCCc-ccccc--c
Q psy6546         165 TMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHS--GITYSC--PSCSKSFNRKDRYRMHLKLHQGVR-HTCKE--C  237 (294)
Q Consensus       165 ~l~~H~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~--C  237 (294)
                      .|..|+.                          +.|.  .++|.|  +.|++.|.+...|..|+++|++++ |.|..  |
T Consensus        89 ~l~~H~~--------------------------~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C  142 (190)
T 1tf6_A           89 NMKKHFN--------------------------RFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGC  142 (190)
T ss_dssp             HHHHHHH--------------------------TTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSC
T ss_pred             HHHHHHH--------------------------HhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCC
Confidence            5555542                          2331  236777  667777777777777777777665 77766  7


Q ss_pred             cccccCHHHHHHHHhhhccccccccc---ccccccchhhhhhhhhhccCc
Q psy6546         238 SKEFSNEYNLKNHMVLHDVRAYVCEL---CARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       238 ~~~f~~~~~l~~H~~~h~~~~~~C~~---C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      ++.|.....|..|+++|.+  |.|..   |++.|.+...|..|+++||++
T Consensus       143 ~k~F~~~~~L~~H~~~H~~--~~C~~~~~C~~~f~~~~~l~~H~~~h~~e  190 (190)
T 1tf6_A          143 DKRFSLPSRLKRHEKVHAG--YPCKKDDSCSFVGKTWTLYLKHVAECHQD  190 (190)
T ss_dssp             CCBCSSHHHHHHHHTSSCS--CCCCSTTTCCCCCSCHHHHHHHHTTCC--
T ss_pred             CchhcCHHHHHHHHHHhCC--CcCCCCCcCCCccccHHHHHHHHHhhcCC
Confidence            7777777777777777766  77777   888888888888888777763

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.97  E-value=1e-29  Score=196.40  Aligned_cols=161  Identities=27%  Similarity=0.578  Sum_probs=135.1

Q ss_pred             cccCC--ccCccchhccccCCCCCCCccchhhcccCCCCCcccC--CccCccccChHHHHHHHhhccCc-ccCCc--ccc
Q psy6546          58 IIYPC--PECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPC--PQCSRDFATVKILKTHLKTHEGI-IYPCP--ECD  130 (294)
Q Consensus        58 ~~~~c--~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~-~~~C~--~C~  130 (294)
                      .+|.|  +.|++.|....         .+..+...+.+.++|.|  ..|++.|.+...|..|++.|.+. +|.|.  .|+
T Consensus        11 ~~~~C~~~~C~~~f~~~~---------~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~   81 (190)
T 1tf6_A           11 KRYICSFADCGAAYNKNW---------KLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCD   81 (190)
T ss_dssp             CCCBCSSTTTCCBCSSHH---------HHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCC
T ss_pred             cceeCCCCCCcchhCCHH---------HHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCC
Confidence            37999  68999997765         67777778888999999  89999999999999999999884 99999  899


Q ss_pred             cccCChHhHHHHH-hhhC-CCC-ccC--CCCCcccCCHHHHHHHHHhhcCC-CcccCc--chhccCCchHHHhHHhhcCC
Q psy6546         131 KTFLSTSGLREHR-KVHA-GVR-YIC--HACPREFSSEATMKAHVASHNGV-QHACDQ--CDRTFSCMPYLRQHQKLHSG  202 (294)
Q Consensus       131 ~~f~~~~~l~~H~-~~h~-~~~-~~C--~~C~~~f~~~~~l~~H~~~~~~~-~~~C~~--C~~~f~~~~~l~~H~~~h~~  202 (294)
                      +.|.+...|..|+ +.|. +.. |.|  ..|++.|.....|..|+++|+++ +|.|+.  |++.|.....|..|+++|++
T Consensus        82 ~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A           82 LRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             CEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             CccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC
Confidence            9999999999999 5553 333 888  88999999988899998888876 788866  88888888888888887776


Q ss_pred             CceeCCC---CccccCCHHHHHHHHHHhCC
Q psy6546         203 ITYSCPS---CSKSFNRKDRYRMHLKLHQG  229 (294)
Q Consensus       203 ~~~~C~~---C~~~f~~~~~l~~H~~~h~~  229 (294)
                        |.|..   |++.|.+...|..|+++|++
T Consensus       162 --~~C~~~~~C~~~f~~~~~l~~H~~~h~~  189 (190)
T 1tf6_A          162 --YPCKKDDSCSFVGKTWTLYLKHVAECHQ  189 (190)
T ss_dssp             --CCCCSTTTCCCCCSCHHHHHHHHTTCC-
T ss_pred             --CcCCCCCcCCCccccHHHHHHHHHhhcC
Confidence              77777   88888888888888777765

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=1.1e-25  Score=167.94  Aligned_cols=133  Identities=29%  Similarity=0.609  Sum_probs=105.1

Q ss_pred             ccCCCCCcccCCHHHHHHHHH---hhcCC-Cccc-----CcchhccCCchHHHhHHhhcCC-CceeCCC--CccccCCHH
Q psy6546         151 YICHACPREFSSEATMKAHVA---SHNGV-QHAC-----DQCDRTFSCMPYLRQHQKLHSG-ITYSCPS--CSKSFNRKD  218 (294)
Q Consensus       151 ~~C~~C~~~f~~~~~l~~H~~---~~~~~-~~~C-----~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~--C~~~f~~~~  218 (294)
                      +.|..|++.|.+...|..|+.   ++.++ +|.|     ..|++.|.....|..|++.|.+ ++|.|++  |++.|.+..
T Consensus         4 ~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~   83 (155)
T 2gli_A            4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLE   83 (155)
T ss_dssp             CCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHH
T ss_pred             CCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHH
Confidence            445555555555555555555   23332 4544     4455888888888888888876 4899985  999999999


Q ss_pred             HHHHHHHHhCCCc-ccccc--ccccccCHHHHHHHH-hhhc-cccccccc--ccccccchhhhhhhhhhccC
Q psy6546         219 RYRMHLKLHQGVR-HTCKE--CSKEFSNEYNLKNHM-VLHD-VRAYVCEL--CARQFTRVDHFNHHRRLQHD  283 (294)
Q Consensus       219 ~l~~H~~~h~~~~-~~C~~--C~~~f~~~~~l~~H~-~~h~-~~~~~C~~--C~~~f~~~~~l~~H~~~~h~  283 (294)
                      .|..|+++|.+++ |.|..  |++.|.....|..|+ ++|. +++|.|++  |++.|.+...|..|+++||+
T Consensus        84 ~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A           84 NLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             HHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             HHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            9999999988766 99998  999999999999998 7886 78999988  99999999999999999885

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=2e-24  Score=161.19  Aligned_cols=134  Identities=27%  Similarity=0.518  Sum_probs=75.7

Q ss_pred             CcccCCccCccccChHHHHHHHh---hccC-cccCCcccc-----cccCChHhHHHHHhhhCCCC-ccCCC--CCcccCC
Q psy6546          95 TRHPCPQCSRDFATVKILKTHLK---THEG-IIYPCPECD-----KTFLSTSGLREHRKVHAGVR-YICHA--CPREFSS  162 (294)
Q Consensus        95 ~~~~C~~C~~~f~~~~~l~~H~~---~~~~-~~~~C~~C~-----~~f~~~~~l~~H~~~h~~~~-~~C~~--C~~~f~~  162 (294)
                      .+|.|..|++.|.+...|..|++   .|.+ .+|.|.+|+     +.|.+...|..|++.|.+++ |.|..  |++.|..
T Consensus         2 ~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~   81 (155)
T 2gli_A            2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSR   81 (155)
T ss_dssp             CBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSS
T ss_pred             CcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccC
Confidence            45778888888888888888887   4444 367776542     55555555555555555443 55543  5555555


Q ss_pred             HHHHHHHHHhhcCC-CcccCc--chhccCCchHHHhHH-hhcCC-CceeCCC--CccccCCHHHHHHHHHHhC
Q psy6546         163 EATMKAHVASHNGV-QHACDQ--CDRTFSCMPYLRQHQ-KLHSG-ITYSCPS--CSKSFNRKDRYRMHLKLHQ  228 (294)
Q Consensus       163 ~~~l~~H~~~~~~~-~~~C~~--C~~~f~~~~~l~~H~-~~h~~-~~~~C~~--C~~~f~~~~~l~~H~~~h~  228 (294)
                      ...|..|+++|+++ +|.|++  |++.|.....|..|+ +.|.+ ++|.|++  |++.|.+.+.|..|+++|+
T Consensus        82 ~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A           82 LENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             HHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhc
Confidence            55555555555443 455554  555555555555554 44443 2455544  5555555555555555444

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.89  E-value=2.6e-23  Score=155.01  Aligned_cols=88  Identities=28%  Similarity=0.543  Sum_probs=80.6

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCCc-ccccc--ccccccCHHHHHHHHhhhc-cccccccc--ccccccchhhhhhh
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKE--CSKEFSNEYNLKNHMVLHD-VRAYVCEL--CARQFTRVDHFNHH  277 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~--C~~~f~~~~~l~~H~~~h~-~~~~~C~~--C~~~f~~~~~l~~H  277 (294)
                      +|.|..|++.|.+...|..|+++|++++ |.|..  |++.|.....|..|+++|. +++|.|.+  |++.|.....|..|
T Consensus        62 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H  141 (155)
T 2rpc_A           62 WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKH  141 (155)
T ss_dssp             BTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHS
T ss_pred             ccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHH
Confidence            3789999999999999999999998766 99988  9999999999999999996 88999997  99999999999999


Q ss_pred             hhhccCcccccccc
Q psy6546         278 RRLQHDPEEFEKVG  291 (294)
Q Consensus       278 ~~~~h~~~~~~~~~  291 (294)
                      +++|+++++|+|.+
T Consensus       142 ~~~H~~~k~~~c~g  155 (155)
T 2rpc_A          142 MHVHTSDKSGPSSG  155 (155)
T ss_dssp             STTTTSCCCSCSCC
T ss_pred             HHHhcCCCCCCCCC
Confidence            99999999998864

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.88  E-value=3.8e-23  Score=148.21  Aligned_cols=112  Identities=27%  Similarity=0.591  Sum_probs=96.2

Q ss_pred             CCcccC--cchhccCCchHHHhHHhhcCCCceeCCCCccccCCHHHHHHHHHHhCCCc-ccccc--ccccccCHHHHHHH
Q psy6546         176 VQHACD--QCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKE--CSKEFSNEYNLKNH  250 (294)
Q Consensus       176 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~--C~~~f~~~~~l~~H  250 (294)
                      .+|.|+  .|++.|.+...|..|++.|..++|.|+.|++.|.+...|..|++.|.+++ |.|..  |++.|.....|..|
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H   83 (124)
T 1ubd_C            4 RTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH   83 (124)
T ss_dssp             -CEECCSTTCCCEESSHHHHHHHHGGGSCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHH
T ss_pred             CcccCCCCCCcCccCCHHHHHHHHHHcCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHH
Confidence            368888  89999999999999999886679999999999999999999999998876 99975  99999999999999


Q ss_pred             Hhhhc-ccccccc--cccccccchhhhhhhhhhccCcccc
Q psy6546         251 MVLHD-VRAYVCE--LCARQFTRVDHFNHHRRLQHDPEEF  287 (294)
Q Consensus       251 ~~~h~-~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~  287 (294)
                      +++|. +++|.|+  .|++.|.+...|..|+++|++++++
T Consensus        84 ~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           84 VRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             HHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             HHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            99996 8899995  5999999999999999999998765

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=1.5e-22  Score=145.07  Aligned_cols=108  Identities=29%  Similarity=0.628  Sum_probs=87.2

Q ss_pred             CcccCcchhccCCchHHHhHHhhcCC-CceeCCCCccccCCHHHHHHHHHHh---CCCc-cccccccccccCHHHHHHHH
Q psy6546         177 QHACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLH---QGVR-HTCKECSKEFSNEYNLKNHM  251 (294)
Q Consensus       177 ~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h---~~~~-~~C~~C~~~f~~~~~l~~H~  251 (294)
                      +|.|++|++.|.....|..|++.|.+ ++|.|+.|++.|.+...|..|+..+   .+.. |.|..|++.|.....|..|+
T Consensus         7 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   86 (124)
T 2dlq_A            7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHM   86 (124)
T ss_dssp             SCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHH
T ss_pred             CCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHH
Confidence            67788888888888888888877776 4888888888888888888888763   3333 88888888888888888888


Q ss_pred             hhhc-ccccccccccccccchhhhhhhhhhccCc
Q psy6546         252 VLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       252 ~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      ++|. +++|.|++|++.|.+...|..|++..|+.
T Consensus        87 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           87 VSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             HHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             HHcCCCCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence            8886 78889999999999888999998765554

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.87  E-value=2e-22  Score=143.31  Aligned_cols=105  Identities=30%  Similarity=0.752  Sum_probs=88.5

Q ss_pred             CcccCc--chhccCCchHHHhHHhhcCC-CceeCC--CCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHHHH
Q psy6546         177 QHACDQ--CDRTFSCMPYLRQHQKLHSG-ITYSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNH  250 (294)
Q Consensus       177 ~~~C~~--C~~~f~~~~~l~~H~~~h~~-~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H  250 (294)
                      +|.|.+  |++.|.....|..|++.|.+ ++|.|+  .|++.|.+...|..|+++|++++ |.|..|++.|.....|..|
T Consensus         6 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   85 (119)
T 2jp9_A            6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH   85 (119)
T ss_dssp             CBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHH
T ss_pred             eeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHHHH
Confidence            678876  88888888888888887765 488888  68888888888888988887766 8899999999999999999


Q ss_pred             Hhhhc-cccccc--ccccccccchhhhhhhhhhc
Q psy6546         251 MVLHD-VRAYVC--ELCARQFTRVDHFNHHRRLQ  281 (294)
Q Consensus       251 ~~~h~-~~~~~C--~~C~~~f~~~~~l~~H~~~~  281 (294)
                      +++|. +++|.|  +.|++.|.+...|..|+++|
T Consensus        86 ~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           86 TRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            88886 778888  78999999999999988775

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.85  E-value=2.5e-22  Score=144.74  Aligned_cols=102  Identities=27%  Similarity=0.474  Sum_probs=86.8

Q ss_pred             HHhhcCC-CcccCcchhccCCchHHHhHHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHH
Q psy6546         170 VASHNGV-QHACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYN  246 (294)
Q Consensus       170 ~~~~~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~  246 (294)
                      ..++.|+ +|.|++|++.|...+.|..|+++|.+ ++|.|++|++.|.+...|..|+++|.+++ |.|..|++.|.....
T Consensus        14 ~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~   93 (133)
T 2lt7_A           14 ELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQF   93 (133)
T ss_dssp             EEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHH
T ss_pred             eeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHH
Confidence            3456666 79999999999999999999999976 48999999999999999999999998876 999999999999999


Q ss_pred             HHHHHhhhc-------ccccccccccccccch
Q psy6546         247 LKNHMVLHD-------VRAYVCELCARQFTRV  271 (294)
Q Consensus       247 l~~H~~~h~-------~~~~~C~~C~~~f~~~  271 (294)
                      |..|+++|.       .++|+|..|++.|...
T Consensus        94 L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           94 MSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             HHHHHHHHTCCCTTSSSCCEEECCCCSSCCCC
T ss_pred             HHHHhHHhcCCCCCCCCCCeecCCCCchhhhc
Confidence            999988874       2568899998877543

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.85  E-value=1.8e-21  Score=145.08  Aligned_cols=85  Identities=27%  Similarity=0.634  Sum_probs=70.1

Q ss_pred             cccCcchhccCCchHHHhHHhhcCC-CceeCCC--CccccCCHHHHHHHHHHhCCCc-ccccc--ccccccCHHHHHHHH
Q psy6546         178 HACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPS--CSKSFNRKDRYRMHLKLHQGVR-HTCKE--CSKEFSNEYNLKNHM  251 (294)
Q Consensus       178 ~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~-~~C~~--C~~~f~~~~~l~~H~  251 (294)
                      |.|.+|++.|.....|..|++.|.+ ++|.|.+  |++.|.....|..|+++|++++ |.|..  |++.|.....|..|+
T Consensus        63 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~  142 (155)
T 2rpc_A           63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM  142 (155)
T ss_dssp             TTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSS
T ss_pred             cCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHH
Confidence            6777788888877788888777765 4888887  8888888888888888888766 88886  888888888888888


Q ss_pred             hhhc-ccccccc
Q psy6546         252 VLHD-VRAYVCE  262 (294)
Q Consensus       252 ~~h~-~~~~~C~  262 (294)
                      ++|. ++||.|+
T Consensus       143 ~~H~~~k~~~c~  154 (155)
T 2rpc_A          143 HVHTSDKSGPSS  154 (155)
T ss_dssp             TTTTSCCCSCSC
T ss_pred             HHhcCCCCCCCC
Confidence            8886 7888885

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.85  E-value=8e-22  Score=142.08  Aligned_cols=101  Identities=24%  Similarity=0.485  Sum_probs=76.0

Q ss_pred             hhhCCCC-ccCCCCCcccCCHHHHHHHHHhhcCC-CcccCcchhccCCchHHHhHHhhcCC-CceeCCCCccccCCHHHH
Q psy6546         144 KVHAGVR-YICHACPREFSSEATMKAHVASHNGV-QHACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRY  220 (294)
Q Consensus       144 ~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~~~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~C~~~f~~~~~l  220 (294)
                      .++.|++ |.|.+|++.|.....|..|+++|+++ +|.|++|++.|.....|..|+++|.+ +||.|++|++.|...+.|
T Consensus        15 ~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L   94 (133)
T 2lt7_A           15 LIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFM   94 (133)
T ss_dssp             EEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHH
T ss_pred             eecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHH
Confidence            4566665 78888888888888888888887765 78888888888888888888887765 478888888888888888


Q ss_pred             HHHHHHhCCC-------ccccccccccccCH
Q psy6546         221 RMHLKLHQGV-------RHTCKECSKEFSNE  244 (294)
Q Consensus       221 ~~H~~~h~~~-------~~~C~~C~~~f~~~  244 (294)
                      ..|+++|+++       .|+|..|++.|...
T Consensus        95 ~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           95 SSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             HHHHHHHTCCCTTSSSCCEEECCCCSSCCCC
T ss_pred             HHHhHHhcCCCCCCCCCCeecCCCCchhhhc
Confidence            8888777643       17788887776543

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.84  E-value=1.2e-20  Score=135.14  Aligned_cols=110  Identities=30%  Similarity=0.623  Sum_probs=62.4

Q ss_pred             CCCcccCCccCccccChHHHHHHHhhccCc-ccCCcccccccCChHhHHHHHhhhCCCCccCCCCCcccCCHHHHHHHHH
Q psy6546          93 TLTRHPCPQCSRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKAHVA  171 (294)
Q Consensus        93 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~  171 (294)
                      +.++|.|..|++.|.+...|..|++.|.+. +|.|.+|++.|.....|..|+..++.                       
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~-----------------------   60 (124)
T 2dlq_A            4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM-----------------------   60 (124)
T ss_dssp             CCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCC-----------------------
T ss_pred             CCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhc-----------------------
Confidence            345566666666666666666666665543 55555555555555555555553210                       


Q ss_pred             hhcC-CCcccCcchhccCCchHHHhHHhhcCC-CceeCCCCccccCCHHHHHHHHHH
Q psy6546         172 SHNG-VQHACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKL  226 (294)
Q Consensus       172 ~~~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~  226 (294)
                       +.+ .+|.|++|++.|.....|..|++.|++ ++|.|++|++.|.+...|..|++.
T Consensus        61 -~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  116 (124)
T 2dlq_A           61 -NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIK  116 (124)
T ss_dssp             -CSCCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             -CCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHH
Confidence             111 245555555555555555555555554 366777777777777777777653

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.84  E-value=5.2e-21  Score=135.95  Aligned_cols=108  Identities=32%  Similarity=0.761  Sum_probs=57.9

Q ss_pred             CCcccCCc--cCccccChHHHHHHHhhccCc-ccCCc--ccccccCChHhHHHHHhhhCCCCccCCCCCcccCCHHHHHH
Q psy6546          94 LTRHPCPQ--CSRDFATVKILKTHLKTHEGI-IYPCP--ECDKTFLSTSGLREHRKVHAGVRYICHACPREFSSEATMKA  168 (294)
Q Consensus        94 ~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~-~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~  168 (294)
                      +++|.|..  |++.|.+...|..|++.|.+. +|.|.  .|++.|.+...|..|++.|++++                  
T Consensus         4 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~------------------   65 (119)
T 2jp9_A            4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK------------------   65 (119)
T ss_dssp             SCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCC------------------
T ss_pred             CeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCC------------------
Confidence            44555554  555555555555555555442 55555  35555555555555555544433                  


Q ss_pred             HHHhhcCCCcccCcchhccCCchHHHhHHhhcCC-CceeC--CCCccccCCHHHHHHHHHHh
Q psy6546         169 HVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG-ITYSC--PSCSKSFNRKDRYRMHLKLH  227 (294)
Q Consensus       169 H~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~C--~~C~~~f~~~~~l~~H~~~h  227 (294)
                              +|.|++|++.|.....|..|++.|++ ++|.|  +.|++.|.+...|..|+++|
T Consensus        66 --------~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           66 --------PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             --------CEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             --------CccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence                    45555555555555555555555444 25666  55666666666666666544

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.84  E-value=6.4e-21  Score=136.54  Aligned_cols=109  Identities=30%  Similarity=0.712  Sum_probs=83.5

Q ss_pred             ccCC--CCCcccCCHHHHHHHHHhhcCCCcccCcchhccCCchHHHhHHhhcCC-CceeCCC--CccccCCHHHHHHHHH
Q psy6546         151 YICH--ACPREFSSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPS--CSKSFNRKDRYRMHLK  225 (294)
Q Consensus       151 ~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~--C~~~f~~~~~l~~H~~  225 (294)
                      |.|+  .|++.|.+...|..|+.+|...+|.|++|++.|.....|..|++.|.+ ++|.|..  |++.|.+...|..|++
T Consensus         6 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~   85 (124)
T 1ubd_C            6 IACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR   85 (124)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHGGGSCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHH
T ss_pred             ccCCCCCCcCccCCHHHHHHHHHHcCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHH
Confidence            6777  677777777777777777744577888888888888888888887776 4888875  8888888888888888


Q ss_pred             HhCCCc-cccc--cccccccCHHHHHHHHhhhc-cccc
Q psy6546         226 LHQGVR-HTCK--ECSKEFSNEYNLKNHMVLHD-VRAY  259 (294)
Q Consensus       226 ~h~~~~-~~C~--~C~~~f~~~~~l~~H~~~h~-~~~~  259 (294)
                      +|++++ |.|.  .|++.|.....|..|+++|. ++++
T Consensus        86 ~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           86 IHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             HHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             HhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            887765 8885  58888888888888888886 5554

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.80  E-value=1e-19  Score=126.48  Aligned_cols=88  Identities=22%  Similarity=0.539  Sum_probs=82.8

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhhhhhh
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNHHRRL  280 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~  280 (294)
                      ++|.|.+|++.|.....|..|++.|.+++ |.|..|++.|.....|..|+++|. +++|.|.+|++.|.+...|..|+++
T Consensus        16 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~   95 (106)
T 2ee8_A           16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTL   95 (106)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHHHH
Confidence            48999999999999999999999998876 999999999999999999999997 8899999999999999999999999


Q ss_pred             ccCccccccc
Q psy6546         281 QHDPEEFEKV  290 (294)
Q Consensus       281 ~h~~~~~~~~  290 (294)
                      |+++++|.+.
T Consensus        96 H~~~~~~~~~  105 (106)
T 2ee8_A           96 HMQTSSPTAA  105 (106)
T ss_dssp             TTSCCCCCCC
T ss_pred             hCCCCCCcCC
Confidence            9999998764

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.78  E-value=2.5e-19  Score=122.16  Aligned_cols=85  Identities=26%  Similarity=0.589  Sum_probs=76.3

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhhhhhh
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNHHRRL  280 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~  280 (294)
                      ++|.|.+|++.|.+...|..|++.|.+.+ |.|..|++.|.....|..|+++|. +++|+|.+|++.|.....|..|+++
T Consensus         7 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   86 (96)
T 2dmd_A            7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRS   86 (96)
T ss_dssp             CCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHHHTT
T ss_pred             cCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHH
Confidence            58999999999999999999999888765 999999999999999999999986 7899999999999999999999999


Q ss_pred             ccCcccc
Q psy6546         281 QHDPEEF  287 (294)
Q Consensus       281 ~h~~~~~  287 (294)
                      |++++.-
T Consensus        87 h~~~~~p   93 (96)
T 2dmd_A           87 HTGDSGP   93 (96)
T ss_dssp             CCSCCCC
T ss_pred             hcCCCCC
Confidence            9988754

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.78  E-value=2.8e-19  Score=118.13  Aligned_cols=80  Identities=28%  Similarity=0.695  Sum_probs=72.3

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhhhhhhc
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQ  281 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~  281 (294)
                      ||.|+.|++.|.+...|..|++.|.+.+ |.|..|++.|.....|..|+++|. +++|.|+.|++.|.+...|..|+++|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            6889999999999999999999988766 999999999999999999999986 88999999999999999999999988


Q ss_pred             cC
Q psy6546         282 HD  283 (294)
Q Consensus       282 h~  283 (294)
                      ++
T Consensus        81 ~g   82 (82)
T 2kmk_A           81 TG   82 (82)
T ss_dssp             C-
T ss_pred             CC
Confidence            75

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.77  E-value=6.3e-19  Score=118.59  Aligned_cols=83  Identities=28%  Similarity=0.781  Sum_probs=75.9

Q ss_pred             CceeCC--CCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhhhh
Q psy6546         203 ITYSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNHHR  278 (294)
Q Consensus       203 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~  278 (294)
                      ++|.|+  .|++.|.....|..|+++|.+.+ |.|..|++.|.....|..|+++|. +++|.|++|++.|.....|..|+
T Consensus         3 k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   82 (90)
T 1a1h_A            3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT   82 (90)
T ss_dssp             CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHH
T ss_pred             CceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHHH
Confidence            589998  59999999999999999998766 999999999999999999999996 88999999999999999999999


Q ss_pred             hhccCcc
Q psy6546         279 RLQHDPE  285 (294)
Q Consensus       279 ~~~h~~~  285 (294)
                      ++|++++
T Consensus        83 ~~H~~~k   89 (90)
T 1a1h_A           83 KIHLRQK   89 (90)
T ss_dssp             GGGGC--
T ss_pred             HHhcccC
Confidence            9999875

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=4.1e-19  Score=123.58  Aligned_cols=94  Identities=17%  Similarity=0.267  Sum_probs=82.4

Q ss_pred             HhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCccccccccccccCHHHHHHHHhhhc-ccccccccccccccchhhh
Q psy6546         197 QKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHF  274 (294)
Q Consensus       197 ~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l  274 (294)
                      ++.|.+ ++|.|.+|++.|.....|..|+++|. .+|.|..|++.|.....|..|++ |. +++|+|.+|++.|.....|
T Consensus         8 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~-~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L   85 (107)
T 1wjp_A            8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR-NAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSI   85 (107)
T ss_dssp             CCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH-HSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHH
T ss_pred             CcccCCCcCeECCCCCCccCCHHHHHHHHHHCC-CCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHH
Confidence            345555 48999999999999999999999984 46999999999999999999985 76 8899999999999999999


Q ss_pred             hhhhh-hccCccccccccc
Q psy6546         275 NHHRR-LQHDPEEFEKVGA  292 (294)
Q Consensus       275 ~~H~~-~~h~~~~~~~~~~  292 (294)
                      ..|++ .|.++++|.+.++
T Consensus        86 ~~H~~~~H~~~~~~~~~~p  104 (107)
T 1wjp_A           86 WRHQVEVHNQNNMAPTSGP  104 (107)
T ss_dssp             HHHHHHTSCCCCCCCCCCS
T ss_pred             HHHHHHHcCCCCCCCCCCC
Confidence            99997 8889999987765

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=6.2e-20  Score=129.55  Aligned_cols=100  Identities=14%  Similarity=0.265  Sum_probs=88.8

Q ss_pred             chHHHhHHhhcCC-CceeCCCCccccCCHHHHHHHHHH--hCCCc--cccccccccc--cCHHHHHHHHhhhc-cccccc
Q psy6546         190 MPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKL--HQGVR--HTCKECSKEF--SNEYNLKNHMVLHD-VRAYVC  261 (294)
Q Consensus       190 ~~~l~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~--~~C~~C~~~f--~~~~~l~~H~~~h~-~~~~~C  261 (294)
                      ...|..|+++|.+ ++|.|++|++.|.+...|..|++.  |.+.+  +.|..|++.|  .....|..|+++|. ++||.|
T Consensus         4 ~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C   83 (115)
T 2dmi_A            4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKC   83 (115)
T ss_dssp             CCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBC
T ss_pred             chhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceEC
Confidence            4567788888887 499999999999999999999998  65554  5699999999  89999999999997 899999


Q ss_pred             ccccccccchhhhhhhhhhccCcccccc
Q psy6546         262 ELCARQFTRVDHFNHHRRLQHDPEEFEK  289 (294)
Q Consensus       262 ~~C~~~f~~~~~l~~H~~~~h~~~~~~~  289 (294)
                      ++|++.|.+...|..|+++||.......
T Consensus        84 ~~C~k~f~~~~~L~~H~~~hh~~~~~~~  111 (115)
T 2dmi_A           84 MYCGHSFESLQDLSVHMIKTKHYQKVSG  111 (115)
T ss_dssp             SSSCCBCSSHHHHHHHHHHTTTTTCSCC
T ss_pred             CCCCCccCCHHHHHHHHHHhCCcccCCC
Confidence            9999999999999999999998776543

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.73  E-value=7.4e-18  Score=114.51  Aligned_cols=81  Identities=28%  Similarity=0.613  Sum_probs=69.9

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHHHHHhhhc-c--cccccccccccccchhhhhhhh
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-V--RAYVCELCARQFTRVDHFNHHR  278 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~--~~~~C~~C~~~f~~~~~l~~H~  278 (294)
                      ++|.|.+|++.|.+...|..|+++|.+++ |.|..|++.|.....|..|+++|. +  ++|.|++|++.|.+...|..|+
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~   85 (95)
T 2yt9_A            6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHI   85 (95)
T ss_dssp             SCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHH
T ss_pred             CCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHH
Confidence            58899999999999999999999888766 999999999999999999998886 3  7899999999999999999998


Q ss_pred             hhccC
Q psy6546         279 RLQHD  283 (294)
Q Consensus       279 ~~~h~  283 (294)
                      +..|.
T Consensus        86 ~~~H~   90 (95)
T 2yt9_A           86 KQVHS   90 (95)
T ss_dssp             HHTSC
T ss_pred             HHhcC
Confidence            64443

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.72  E-value=1.4e-18  Score=116.27  Aligned_cols=81  Identities=17%  Similarity=0.458  Sum_probs=74.6

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHHHHHhhhcccccccccccccccchhhhhhhhhhc
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHDVRAYVCELCARQFTRVDHFNHHRRLQ  281 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~  281 (294)
                      +||.|++|++.|.+...|..|+++|.+++ |.|..|++.|.....|..|+++|.+.+|.|..|++.|.....|..|++.+
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~L~~H~~~~   81 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVARL   81 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhhhHHHHHHH
Confidence            58999999999999999999999998876 99999999999999999999999889999999999999999999999887


Q ss_pred             cC
Q psy6546         282 HD  283 (294)
Q Consensus       282 h~  283 (294)
                      |+
T Consensus        82 h~   83 (88)
T 1llm_C           82 KK   83 (88)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=7e-18  Score=117.93  Aligned_cols=82  Identities=33%  Similarity=0.723  Sum_probs=73.0

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhhhhhh
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNHHRRL  280 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~  280 (294)
                      ++|.| .|++.|.+...|..|++.|.+++ |.|..|++.|.....|..|+++|. +++|+|.+|++.|.....|..|+++
T Consensus         9 k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   87 (110)
T 2csh_A            9 KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTS   87 (110)
T ss_dssp             CCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHHHHHH
Confidence            48999 89999999999999999988766 999999999999999999999986 7899999999999999999999998


Q ss_pred             ccCcc
Q psy6546         281 QHDPE  285 (294)
Q Consensus       281 ~h~~~  285 (294)
                      |+...
T Consensus        88 ~~~~~   92 (110)
T 2csh_A           88 CTKSY   92 (110)
T ss_dssp             HHHHH
T ss_pred             ccccc
Confidence            88654

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.70  E-value=8.1e-18  Score=116.97  Aligned_cols=89  Identities=21%  Similarity=0.404  Sum_probs=71.9

Q ss_pred             hhcCC-CcccCcchhccCCchHHHhHHhhcCCCceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHHH
Q psy6546         172 SHNGV-QHACDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKN  249 (294)
Q Consensus       172 ~~~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~  249 (294)
                      +++++ +|.|.+|++.|.....|..|++.|. ++|.|.+|++.|.....|..|+. |.+++ |.|..|++.|.....|..
T Consensus        10 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~-~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L~~   87 (107)
T 1wjp_A           10 PVENKEVYQCRLCNAKLSSLLEQGSHERLCR-NAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIWR   87 (107)
T ss_dssp             CCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH-HSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHHHH
T ss_pred             ccCCCcCeECCCCCCccCCHHHHHHHHHHCC-CCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHHHH
Confidence            34444 7888888888888888888888773 58889999999999889999985 77766 899999999999999999


Q ss_pred             HHh-hhc-ccccccc
Q psy6546         250 HMV-LHD-VRAYVCE  262 (294)
Q Consensus       250 H~~-~h~-~~~~~C~  262 (294)
                      |++ +|. +++|.|+
T Consensus        88 H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           88 HQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHHTSCCCCCCCCC
T ss_pred             HHHHHcCCCCCCCCC
Confidence            986 775 7788774

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.70  E-value=1e-16  Score=111.16  Aligned_cols=89  Identities=29%  Similarity=0.555  Sum_probs=77.6

Q ss_pred             CCCCCcccCCccCccccChHHHHHHHhhccCc-ccCCcccccccCChHhHHHHHhhhCCCC-ccCCCCCcccCCHHHHHH
Q psy6546          91 STTLTRHPCPQCSRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKA  168 (294)
Q Consensus        91 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~  168 (294)
                      ....++|.|..|++.|.....|..|++.|.+. +|.|.+|++.|.....|..|++.|.+++ |.|..|++.|.....|..
T Consensus        12 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~   91 (106)
T 2ee8_A           12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAV   91 (106)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHH
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHH
Confidence            34567899999999999999999999998874 8999999999999999999999998876 899999999999999999


Q ss_pred             HHHhhcCC-Ccc
Q psy6546         169 HVASHNGV-QHA  179 (294)
Q Consensus       169 H~~~~~~~-~~~  179 (294)
                      |+++|+++ +|.
T Consensus        92 H~~~H~~~~~~~  103 (106)
T 2ee8_A           92 HKTLHMQTSSPT  103 (106)
T ss_dssp             HHHHTTSCCCCC
T ss_pred             HHHHhCCCCCCc
Confidence            99988876 443

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.69  E-value=2.6e-17  Score=108.51  Aligned_cols=79  Identities=33%  Similarity=0.676  Sum_probs=52.2

Q ss_pred             CcccCcchhccCCchHHHhHHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHHHHHhhh
Q psy6546         177 QHACDQCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH  254 (294)
Q Consensus       177 ~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h  254 (294)
                      +|.|++|++.|.....|..|++.|.+ ++|.|+.|++.|.+...|..|++.|++++ |.|..|++.|.....|..|+++|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            35566666666666666666666654 36677777777777777777776666554 77777777777777777776666


Q ss_pred             c
Q psy6546         255 D  255 (294)
Q Consensus       255 ~  255 (294)
                      .
T Consensus        81 ~   81 (82)
T 2kmk_A           81 T   81 (82)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.68  E-value=7.5e-17  Score=110.58  Aligned_cols=81  Identities=26%  Similarity=0.647  Sum_probs=73.2

Q ss_pred             CceeCCC--CccccCCHHHHHHHHHHhCCCc-cccc--cccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhh
Q psy6546         203 ITYSCPS--CSKSFNRKDRYRMHLKLHQGVR-HTCK--ECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNH  276 (294)
Q Consensus       203 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~-~~C~--~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~  276 (294)
                      ++|.|.+  |++.|.....|..|++.|.+++ |.|.  .|++.|.....|..|+++|. +++|.|++|++.|.....|..
T Consensus        14 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   93 (100)
T 2ebt_A           14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLAL   93 (100)
T ss_dssp             CCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHHH
T ss_pred             cceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHHH
Confidence            4799986  9999999999999999998766 9996  69999999999999999996 889999999999999999999


Q ss_pred             hhhhccC
Q psy6546         277 HRRLQHD  283 (294)
Q Consensus       277 H~~~~h~  283 (294)
                      |+++|++
T Consensus        94 H~~~H~~  100 (100)
T 2ebt_A           94 HMKRHQN  100 (100)
T ss_dssp             HHHHHCC
T ss_pred             HHHHhCC
Confidence            9998864

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.68  E-value=9e-17  Score=109.32  Aligned_cols=85  Identities=31%  Similarity=0.682  Sum_probs=69.2

Q ss_pred             CCCCcccCCccCccccChHHHHHHHhhccCc-ccCCcccccccCChHhHHHHHhhhCCCC-ccCCCCCcccCCHHHHHHH
Q psy6546          92 TTLTRHPCPQCSRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAH  169 (294)
Q Consensus        92 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H  169 (294)
                      .+.++|.|..|++.|.+...|..|++.|.+. +|.|.+|++.|.....|..|++.|++++ |.|..|++.|.....|..|
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   83 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH   83 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHH
Confidence            4567788888888888888888888888764 7888888888888888888888887765 8888888888888888888


Q ss_pred             HHhhcCC
Q psy6546         170 VASHNGV  176 (294)
Q Consensus       170 ~~~~~~~  176 (294)
                      +++|+++
T Consensus        84 ~~~h~~~   90 (96)
T 2dmd_A           84 LRSHTGD   90 (96)
T ss_dssp             HTTCCSC
T ss_pred             HHHhcCC
Confidence            8887765

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.67  E-value=7.1e-17  Score=98.54  Aligned_cols=54  Identities=22%  Similarity=0.480  Sum_probs=33.1

Q ss_pred             ccccccccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhhhhhhccCc
Q psy6546         231 RHTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       231 ~~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      ||.|.+||+.|...+.|..|+++|. ++||.|.+|+++|.+.++|..|+++|.++
T Consensus         4 py~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            3566666666666666666666664 55666666666666666666666666554

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.67  E-value=7.7e-17  Score=108.02  Aligned_cols=79  Identities=29%  Similarity=0.684  Sum_probs=68.4

Q ss_pred             CceeCCC--CccccCCHHHHHHHHHHhCCCc-cccc--cccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhh
Q psy6546         203 ITYSCPS--CSKSFNRKDRYRMHLKLHQGVR-HTCK--ECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNH  276 (294)
Q Consensus       203 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~-~~C~--~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~  276 (294)
                      ++|.|++  |++.|.+...|..|++.|.+++ |.|.  .|++.|.....|..|+++|. +++|.|+.|++.|.....|..
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   83 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLAL   83 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHH
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHH
Confidence            4788888  9999999999999998888766 8896  59999999999999988886 788999999999999999999


Q ss_pred             hhhhc
Q psy6546         277 HRRLQ  281 (294)
Q Consensus       277 H~~~~  281 (294)
                      |+++|
T Consensus        84 H~~~H   88 (89)
T 2wbs_A           84 HMKRH   88 (89)
T ss_dssp             HGGGG
T ss_pred             HHHhh
Confidence            98876

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.67  E-value=4.6e-17  Score=99.38  Aligned_cols=57  Identities=25%  Similarity=0.607  Sum_probs=53.3

Q ss_pred             CCceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHHHHHhhhcccc
Q psy6546         202 GITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHDVRA  258 (294)
Q Consensus       202 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~  258 (294)
                      ++||.|.+|++.|...+.|..|+++|++++ |.|.+||+.|...+.|..|+++|.++|
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            579999999999999999999999999887 999999999999999999999997554

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.66  E-value=1.2e-16  Score=106.13  Aligned_cols=77  Identities=27%  Similarity=0.512  Sum_probs=68.3

Q ss_pred             ceeC--CCCccccCCHHHHHHHHHHhCCCc-ccccc--ccccccCHHHHHHHHhhhccccccccc---ccccccchhhhh
Q psy6546         204 TYSC--PSCSKSFNRKDRYRMHLKLHQGVR-HTCKE--CSKEFSNEYNLKNHMVLHDVRAYVCEL---CARQFTRVDHFN  275 (294)
Q Consensus       204 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~C~~---C~~~f~~~~~l~  275 (294)
                      ||.|  +.|++.|.+...|..|+++|.+++ |.|..  |++.|.....|..|+++|..  |.|..   |++.|.....|.
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--~~C~~~~~C~~~f~~~~~l~   78 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCSFVGKTWTLYL   78 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS--EECCSCSSCCCEESSHHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC--CCCCCCCCCCCccCCHHHHH
Confidence            5889  889999999999999999888766 99988  99999999999999988877  89988   999999999999


Q ss_pred             hhhhhcc
Q psy6546         276 HHRRLQH  282 (294)
Q Consensus       276 ~H~~~~h  282 (294)
                      .|+++||
T Consensus        79 ~H~~~hh   85 (85)
T 2j7j_A           79 KHVAECH   85 (85)
T ss_dssp             HHHHHCC
T ss_pred             HHHHhcC
Confidence            9998876

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.65  E-value=1.9e-16  Score=106.35  Aligned_cols=83  Identities=28%  Similarity=0.622  Sum_probs=61.7

Q ss_pred             CCcccCC--ccCccccChHHHHHHHhhccCc-ccCCcccccccCChHhHHHHHhhhCCCC-ccCCCCCcccCCHHHHHHH
Q psy6546          94 LTRHPCP--QCSRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMKAH  169 (294)
Q Consensus        94 ~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H  169 (294)
                      +++|.|+  .|++.|.....|..|++.|.+. +|.|..|++.|.....|..|++.|++++ |.|..|++.|.....|..|
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   81 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH   81 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHH
Confidence            4567786  5888888888888888777663 7778888777777777777777777665 7777777777777777777


Q ss_pred             HHhhcCC
Q psy6546         170 VASHNGV  176 (294)
Q Consensus       170 ~~~~~~~  176 (294)
                      +++|+++
T Consensus        82 ~~~H~~~   88 (90)
T 1a1h_A           82 TKIHLRQ   88 (90)
T ss_dssp             HGGGGC-
T ss_pred             HHHhccc
Confidence            7777664

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=2.5e-17  Score=116.03  Aligned_cols=95  Identities=13%  Similarity=0.282  Sum_probs=71.1

Q ss_pred             HhHHHHHhhhCCCC-ccCCCCCcccCCHHHHHHHHHh--hcCC-C-cccCcchhcc--CCchHHHhHHhhcCC-CceeCC
Q psy6546         137 SGLREHRKVHAGVR-YICHACPREFSSEATMKAHVAS--HNGV-Q-HACDQCDRTF--SCMPYLRQHQKLHSG-ITYSCP  208 (294)
Q Consensus       137 ~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~--~~~~-~-~~C~~C~~~f--~~~~~l~~H~~~h~~-~~~~C~  208 (294)
                      ..|..|++.|++++ |.|..|++.|.....|..|+++  +.+. + +.|++|++.|  .....|..|+++|.+ ++|.|+
T Consensus         5 ~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~   84 (115)
T 2dmi_A            5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCM   84 (115)
T ss_dssp             CCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCS
T ss_pred             hhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECC
Confidence            45666777777765 8888888888888888888887  4443 3 3488888877  777888888888775 488888


Q ss_pred             CCccccCCHHHHHHHHHHhCCCc
Q psy6546         209 SCSKSFNRKDRYRMHLKLHQGVR  231 (294)
Q Consensus       209 ~C~~~f~~~~~l~~H~~~h~~~~  231 (294)
                      +|++.|.....|..|++.|+...
T Consensus        85 ~C~k~f~~~~~L~~H~~~hh~~~  107 (115)
T 2dmi_A           85 YCGHSFESLQDLSVHMIKTKHYQ  107 (115)
T ss_dssp             SSCCBCSSHHHHHHHHHHTTTTT
T ss_pred             CCCCccCCHHHHHHHHHHhCCcc
Confidence            88888888888888887766543

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.64  E-value=6.4e-16  Score=104.83  Aligned_cols=85  Identities=29%  Similarity=0.649  Sum_probs=67.4

Q ss_pred             CCCCcccCCccCccccChHHHHHHHhhccCc-ccCCcccccccCChHhHHHHHhhhCCC--C-ccCCCCCcccCCHHHHH
Q psy6546          92 TTLTRHPCPQCSRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTSGLREHRKVHAGV--R-YICHACPREFSSEATMK  167 (294)
Q Consensus        92 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~~--~-~~C~~C~~~f~~~~~l~  167 (294)
                      .+.++|.|..|++.|.+...|..|++.|.+. +|.|.+|++.|.....|..|++.|+++  + |.|..|++.|.....|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~   82 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN   82 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHH
Confidence            4567788888888888888888888888764 788888888888888888888888774  3 88888888888888888


Q ss_pred             HHHH-hhcCC
Q psy6546         168 AHVA-SHNGV  176 (294)
Q Consensus       168 ~H~~-~~~~~  176 (294)
                      .|++ .|.++
T Consensus        83 ~H~~~~H~~~   92 (95)
T 2yt9_A           83 GHIKQVHSGP   92 (95)
T ss_dssp             HHHHHTSCCC
T ss_pred             HHHHHhcCCC
Confidence            8875 55553

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=9e-16  Score=107.08  Aligned_cols=85  Identities=31%  Similarity=0.618  Sum_probs=75.3

Q ss_pred             cCCCCCcccCCccCccccChHHHHHHHhhccCc-ccCCcccccccCChHhHHHHHhhhCCCC-ccCCCCCcccCCHHHHH
Q psy6546          90 MSTTLTRHPCPQCSRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEATMK  167 (294)
Q Consensus        90 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~  167 (294)
                      .+.+.++|.| .|++.|.....|..|++.|.+. +|.|.+|++.|.....|..|++.|++++ |.|..|++.|.....|.
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFH   82 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHH
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHH
Confidence            4567788999 8999999999999999998874 8999999999999999999999998876 99999999999999999


Q ss_pred             HHHHhhcC
Q psy6546         168 AHVASHNG  175 (294)
Q Consensus       168 ~H~~~~~~  175 (294)
                      .|++.++.
T Consensus        83 ~H~~~~~~   90 (110)
T 2csh_A           83 RHVTSCTK   90 (110)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHccc
Confidence            99988765

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.60  E-value=1.7e-16  Score=106.10  Aligned_cols=79  Identities=24%  Similarity=0.472  Sum_probs=68.8

Q ss_pred             CCcccCcchhccCCchHHHhHHhhcCCC-ceeCCCCccccCCHHHHHHHHHHhCCCccccccccccccCHHHHHHHHhhh
Q psy6546         176 VQHACDQCDRTFSCMPYLRQHQKLHSGI-TYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVLH  254 (294)
Q Consensus       176 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h  254 (294)
                      ++|.|++|++.|.....|..|+++|.+. +|.|+.|++.|.....|..|++.|++.+|.|..|++.|.....|..|++.+
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~L~~H~~~~   81 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVARL   81 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhhhHHHHHHH
Confidence            3688888888888888888888888764 899999999999999999999998887799999999999999999997654

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.60  E-value=1.5e-15  Score=101.63  Aligned_cols=78  Identities=35%  Similarity=0.755  Sum_probs=65.4

Q ss_pred             CcccCc--chhccCCchHHHhHHhhcCC-CceeCC--CCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHHHH
Q psy6546         177 QHACDQ--CDRTFSCMPYLRQHQKLHSG-ITYSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNH  250 (294)
Q Consensus       177 ~~~C~~--C~~~f~~~~~l~~H~~~h~~-~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H  250 (294)
                      .|.|+.  |++.|.....|..|++.|.+ ++|.|+  .|++.|.+...|..|++.|.+++ |.|..|++.|.....|..|
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   84 (89)
T 2wbs_A            5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALH   84 (89)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHH
T ss_pred             CeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHHH
Confidence            577877  88888888888888888776 488886  58889988888888988888766 8899999999999999988


Q ss_pred             Hhhh
Q psy6546         251 MVLH  254 (294)
Q Consensus       251 ~~~h  254 (294)
                      +++|
T Consensus        85 ~~~H   88 (89)
T 2wbs_A           85 MKRH   88 (89)
T ss_dssp             GGGG
T ss_pred             HHhh
Confidence            8877

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.57  E-value=2.8e-15  Score=99.36  Aligned_cols=76  Identities=30%  Similarity=0.569  Sum_probs=55.5

Q ss_pred             Cccc--CcchhccCCchHHHhHHhhcCC-CceeCCC--CccccCCHHHHHHHHHHhCCCcccccc---ccccccCHHHHH
Q psy6546         177 QHAC--DQCDRTFSCMPYLRQHQKLHSG-ITYSCPS--CSKSFNRKDRYRMHLKLHQGVRHTCKE---CSKEFSNEYNLK  248 (294)
Q Consensus       177 ~~~C--~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~C~~---C~~~f~~~~~l~  248 (294)
                      +|.|  +.|++.|.....|..|++.|.+ ++|.|++  |++.|.+...|..|+++|++  |.|..   |++.|.....|.
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--~~C~~~~~C~~~f~~~~~l~   78 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCSFVGKTWTLYL   78 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS--EECCSCSSCCCEESSHHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC--CCCCCCCCCCCccCCHHHHH
Confidence            3566  6677777777777777777665 3777766  77777777777777777777  77777   777777777777


Q ss_pred             HHHhhh
Q psy6546         249 NHMVLH  254 (294)
Q Consensus       249 ~H~~~h  254 (294)
                      .|+++|
T Consensus        79 ~H~~~h   84 (85)
T 2j7j_A           79 KHVAEC   84 (85)
T ss_dssp             HHHHHC
T ss_pred             HHHHhc
Confidence            777665

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.57  E-value=1.2e-14  Score=99.41  Aligned_cols=84  Identities=31%  Similarity=0.668  Sum_probs=68.7

Q ss_pred             CCCCcccCCc--cCccccChHHHHHHHhhccCc-ccCCc--ccccccCChHhHHHHHhhhCCCC-ccCCCCCcccCCHHH
Q psy6546          92 TTLTRHPCPQ--CSRDFATVKILKTHLKTHEGI-IYPCP--ECDKTFLSTSGLREHRKVHAGVR-YICHACPREFSSEAT  165 (294)
Q Consensus        92 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~-~~~C~--~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~  165 (294)
                      ...++|.|..  |++.|.....|..|++.|.+. +|.|.  .|++.|.....|..|++.|++++ |.|..|++.|.....
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   90 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDH   90 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHH
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHH
Confidence            4456788886  999999999999998888764 88886  58888888888888888888766 888888888888888


Q ss_pred             HHHHHHhhcC
Q psy6546         166 MKAHVASHNG  175 (294)
Q Consensus       166 l~~H~~~~~~  175 (294)
                      |..|+++|++
T Consensus        91 l~~H~~~H~~  100 (100)
T 2ebt_A           91 LALHMKRHQN  100 (100)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhCC
Confidence            8888887753

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.56  E-value=2e-16  Score=113.79  Aligned_cols=79  Identities=20%  Similarity=0.337  Sum_probs=63.7

Q ss_pred             ceeCCCCcccc------CCHHHHHHHHHHhCC-CccccccccccccCHHHHHHHHhhhcccccccccccccccchhhhhh
Q psy6546         204 TYSCPSCSKSF------NRKDRYRMHLKLHQG-VRHTCKECSKEFSNEYNLKNHMVLHDVRAYVCELCARQFTRVDHFNH  276 (294)
Q Consensus       204 ~~~C~~C~~~f------~~~~~l~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~  276 (294)
                      .+.|++|++.|      .....|..|++ |++ .+|.|..|++.|.....|..|+++| ++||.|++|++.|.....|..
T Consensus        41 ~~~c~~~~~~~~~~~~~~~~~~l~~h~~-h~~~~~~~C~~C~k~f~~~~~l~~H~~~H-~~~~~C~~C~k~f~~~~~l~~  118 (129)
T 2wbt_A           41 RLIRAIVKTLIHNPQLLDESSYLYRLLA-SKAISQFVCPLCLMPFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALD  118 (129)
T ss_dssp             HHHHHHHHHHHHCGGGTTTHHHHHHHHH-HHHHCSEECTTTCCEESSHHHHHHHHHHT-CCCCBCTTTCCBCSSHHHHHH
T ss_pred             cccchhhhcccCCCcccCCHHHHHHHHH-hCCCCCeECCCCCcccCCHhHHHHHHHHC-CCCCCCCCCCcccCCHHHHHH
Confidence            44555555444      46777777775 544 4499999999999999999999999 889999999999999999999


Q ss_pred             hhhhccCc
Q psy6546         277 HRRLQHDP  284 (294)
Q Consensus       277 H~~~~h~~  284 (294)
                      |+++||+.
T Consensus       119 H~~~h~~~  126 (129)
T 2wbt_A          119 HVCKKHNI  126 (129)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHHCCc
Confidence            99999885

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=9.8e-16  Score=104.44  Aligned_cols=77  Identities=18%  Similarity=0.263  Sum_probs=59.2

Q ss_pred             cCCHHHHHHHHHHhCCCc-ccccccccccc-CHHHHHHHHhhhc--ccccccccccccccchhhhhhhhhhccCcccccc
Q psy6546         214 FNRKDRYRMHLKLHQGVR-HTCKECSKEFS-NEYNLKNHMVLHD--VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEK  289 (294)
Q Consensus       214 f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~-~~~~l~~H~~~h~--~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  289 (294)
                      +.....+..|+++|.+++ |.|..|++.|. ....|..|+++|.  +++|.|.+|++.|.....|..|+++||++++...
T Consensus         6 ~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~~   85 (98)
T 2gqj_A            6 SGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDA   85 (98)
T ss_dssp             CCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSCC
T ss_pred             CCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCCC
Confidence            344455667778877765 88888888888 8888888888874  6788888888888888888888888888877644


Q ss_pred             c
Q psy6546         290 V  290 (294)
Q Consensus       290 ~  290 (294)
                      .
T Consensus        86 ~   86 (98)
T 2gqj_A           86 E   86 (98)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=9.5e-15  Score=95.36  Aligned_cols=67  Identities=31%  Similarity=0.639  Sum_probs=58.7

Q ss_pred             CceeCCC--CccccCCHHHHHHHHH-HhCCCc-ccccc--ccccccCHHHHHHHHhhhc-cccccccccccccc
Q psy6546         203 ITYSCPS--CSKSFNRKDRYRMHLK-LHQGVR-HTCKE--CSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFT  269 (294)
Q Consensus       203 ~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~-~~C~~--C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~  269 (294)
                      ++|.|..  |++.|.+...|..|++ .|.+++ |.|..  |++.|.....|..|+++|. +++|.|++|++.|.
T Consensus         6 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             SSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            5788876  9999999999999998 687765 99998  9999999999999999996 88999999999883

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=8.8e-15  Score=97.17  Aligned_cols=76  Identities=22%  Similarity=0.416  Sum_probs=60.4

Q ss_pred             HHhHHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCC-----ccccccccccccCHHHHHHHHhhhc-cccccccccc
Q psy6546         193 LRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGV-----RHTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCA  265 (294)
Q Consensus       193 l~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----~~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~  265 (294)
                      +..|+++|.+ ++|.|.+|++.|.....|..|++.++..     +|.|..|++.|.....|..|+++|. ++++.|..|+
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~   82 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSG   82 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCC
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCC
Confidence            4567777776 4888888888888888888888776653     3888888888888888888888886 7788888888


Q ss_pred             ccc
Q psy6546         266 RQF  268 (294)
Q Consensus       266 ~~f  268 (294)
                      .+|
T Consensus        83 ~~~   85 (86)
T 1x6h_A           83 PSS   85 (86)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            765

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=1e-14  Score=94.68  Aligned_cols=58  Identities=28%  Similarity=0.600  Sum_probs=42.7

Q ss_pred             cccccccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhhhhhhccCcccccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEK  289 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  289 (294)
                      |.|..|++.|.....|..|+++|. +++|.|++|++.|.....|..|+++|+++++|.|
T Consensus        19 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             SBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             EECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            777777777777777777777775 6677777777777777777777777777777765

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=7.9e-15  Score=99.20  Aligned_cols=68  Identities=15%  Similarity=0.195  Sum_probs=34.1

Q ss_pred             CCHHHHHHHHHHhCCCc-cccccccccc-cCHHHHHHHHhhhcccccccccccccccchhhhhhh-hhhcc
Q psy6546         215 NRKDRYRMHLKLHQGVR-HTCKECSKEF-SNEYNLKNHMVLHDVRAYVCELCARQFTRVDHFNHH-RRLQH  282 (294)
Q Consensus       215 ~~~~~l~~H~~~h~~~~-~~C~~C~~~f-~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H-~~~~h  282 (294)
                      .....|..|++.+.+++ |.|..|++.| .....|..|+++|.+++|.|.+|++.|.....|..| +++|.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~   87 (96)
T 2ctd_A           17 AAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHN   87 (96)
T ss_dssp             CTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             CCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCCHHHHHHHhHHhcC
Confidence            33444444544444333 5555555555 555555555555544455555555555555555555 44443

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.48  E-value=2.9e-14  Score=91.73  Aligned_cols=56  Identities=27%  Similarity=0.683  Sum_probs=37.5

Q ss_pred             cccccccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhhhhhhccCcccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEF  287 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~  287 (294)
                      |.|..|++.|.....|..|+++|. +++|+|.+|++.|.....|..|+++|+++++|
T Consensus        18 ~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             BCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             eECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            666666666666666666666664 56666777777777666777777666666654

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=2.8e-14  Score=90.73  Aligned_cols=57  Identities=23%  Similarity=0.417  Sum_probs=45.1

Q ss_pred             cccccccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhhhhhhccCccccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFE  288 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  288 (294)
                      |.|..|++.|.....|..|+++|. +++|+|.+|++.|.....|..|+++|+++++..
T Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A           10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             eECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            778888888888888888877775 777888888888888888888888888877653

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=2.3e-14  Score=95.08  Aligned_cols=74  Identities=24%  Similarity=0.449  Sum_probs=51.6

Q ss_pred             HHHHhhcCC-CcccCcchhccCCchHHHhHHhhcCC-----CceeCCCCccccCCHHHHHHHHHHhCCCc-ccccccccc
Q psy6546         168 AHVASHNGV-QHACDQCDRTFSCMPYLRQHQKLHSG-----ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKE  240 (294)
Q Consensus       168 ~H~~~~~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~-----~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~  240 (294)
                      .|+++|+++ +|.|.+|++.|.....|..|++.++.     ++|.|.+|++.|.....|..|+++|+++. +.|..|+..
T Consensus         5 ~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~   84 (86)
T 1x6h_A            5 SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPS   84 (86)
T ss_dssp             CCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCCCC
T ss_pred             cccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCCCC
Confidence            355555554 56666666666666666666655443     46888888888888888888888887766 888888765


Q ss_pred             c
Q psy6546         241 F  241 (294)
Q Consensus       241 f  241 (294)
                      +
T Consensus        85 ~   85 (86)
T 1x6h_A           85 S   85 (86)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=9.5e-14  Score=93.86  Aligned_cols=74  Identities=19%  Similarity=0.301  Sum_probs=55.8

Q ss_pred             hccCCchHHHhHHhhcCC-CceeCCCCcccc-CCHHHHHHHHHHhCCCc-cccccccccccCHHHHHHH-Hhhhccccc
Q psy6546         185 RTFSCMPYLRQHQKLHSG-ITYSCPSCSKSF-NRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNH-MVLHDVRAY  259 (294)
Q Consensus       185 ~~f~~~~~l~~H~~~h~~-~~~~C~~C~~~f-~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H-~~~h~~~~~  259 (294)
                      ..|.....+..|++.+.+ ++|.|+.|++.| .....|..|+++| +++ |.|.+|++.|.....|..| +++|.++||
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSS
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCC
Confidence            345566667777766655 478888888888 7888888888888 554 8888888888888888888 778876554

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.46  E-value=1.4e-14  Score=103.97  Aligned_cols=69  Identities=26%  Similarity=0.386  Sum_probs=43.8

Q ss_pred             CCHHHHHHHHHhhcCCCcccCcchhccCCchHHHhHHhhcCCCceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         161 SSEATMKAHVASHNGVQHACDQCDRTFSCMPYLRQHQKLHSGITYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       161 ~~~~~l~~H~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      .....|..|+..+...+|.|++|++.|.....|..|+++| .+||.|++|++.|...+.|..|+++|++.
T Consensus        58 ~~~~~l~~h~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H-~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           58 DESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             TTHHHHHHHHHHHHHCSEECTTTCCEESSHHHHHHHHHHT-CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHhCCCCCeECCCCCcccCCHhHHHHHHHHC-CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            4455566665422233666666666666666666666666 55677777777777777777777666653

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=8.9e-14  Score=90.19  Aligned_cols=59  Identities=29%  Similarity=0.564  Sum_probs=52.3

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHHHHHhhhc-cccccc
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVC  261 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C  261 (294)
                      ++|.|++|++.|.....|..|+++|.+++ |.|..|++.|.....|..|+++|. ++||+|
T Consensus        17 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            58999999999999999999999888766 999999999999999999999986 788887

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=1.4e-13  Score=93.59  Aligned_cols=64  Identities=19%  Similarity=0.320  Sum_probs=53.0

Q ss_pred             CceeCCCCccccCCHHHHHHHHHH-h---CCCc-cccccccccccCHHHHHHH-Hhhhc-ccccccccccc
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKL-H---QGVR-HTCKECSKEFSNEYNLKNH-MVLHD-VRAYVCELCAR  266 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~-h---~~~~-~~C~~C~~~f~~~~~l~~H-~~~h~-~~~~~C~~C~~  266 (294)
                      +||.|..|++.|..++.|..|++. |   .+++ |.|..||+.|.....|..| +++|. ++||.|.++..
T Consensus        17 kpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~~   87 (102)
T 2ghf_A           17 GGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKR   87 (102)
T ss_dssp             SSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECCC
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcccC
Confidence            489999999999999999999874 7   3344 9999999999999999999 78886 88999987543

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=1.4e-14  Score=94.02  Aligned_cols=63  Identities=25%  Similarity=0.483  Sum_probs=37.5

Q ss_pred             HHHHHhCCCc-cccccccccccCHHHHHHHHh-hhc--ccccccccccccccchhhhhhhhhhccCc
Q psy6546         222 MHLKLHQGVR-HTCKECSKEFSNEYNLKNHMV-LHD--VRAYVCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       222 ~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~-~h~--~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      +|+++|.+++ |.|..|++.|.....|..|++ .|.  .++|+|++|++.|.....|..|++++|+.
T Consensus         5 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A            5 SSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             CCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             ccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            3455555544 666666666666666666654 443  25666666666666666666666665554

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.42  E-value=1.3e-13  Score=83.81  Aligned_cols=54  Identities=26%  Similarity=0.559  Sum_probs=39.3

Q ss_pred             cccccccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhhhhhhccCcc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPE  285 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  285 (294)
                      |.|..|++.|.....|..|+++|. +++|.|+.|++.|.....|..|+++|++++
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            667777777777777777777775 667777777777777777777777777654

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=1.1e-13  Score=94.00  Aligned_cols=60  Identities=23%  Similarity=0.358  Sum_probs=56.2

Q ss_pred             cccccccccccCHHHHHHHHh-hh---c-ccccccccccccccchhhhhhh-hhhccCcccccccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMV-LH---D-VRAYVCELCARQFTRVDHFNHH-RRLQHDPEEFEKVG  291 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~-~h---~-~~~~~C~~C~~~f~~~~~l~~H-~~~~h~~~~~~~~~  291 (294)
                      |.|..|++.|.....|..|++ +|   . ++||.|++|++.|.....|..| +++|.++++|.|.-
T Consensus        19 y~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~   84 (102)
T 2ghf_A           19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTM   84 (102)
T ss_dssp             EECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEE
T ss_pred             cCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCc
Confidence            999999999999999999997 58   3 7899999999999999999999 89999999999853

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=2.8e-13  Score=88.24  Aligned_cols=68  Identities=35%  Similarity=0.657  Sum_probs=43.7

Q ss_pred             CCCcccCCc--cCccccChHHHHHHHh-hccC-cccCCcc--cccccCChHhHHHHHhhhCCCC-ccCCCCCccc
Q psy6546          93 TLTRHPCPQ--CSRDFATVKILKTHLK-THEG-IIYPCPE--CDKTFLSTSGLREHRKVHAGVR-YICHACPREF  160 (294)
Q Consensus        93 ~~~~~~C~~--C~~~f~~~~~l~~H~~-~~~~-~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f  160 (294)
                      +.++|.|..  |++.|.....|..|++ .|.+ .+|.|.+  |++.|.....|..|++.|++++ |.|..|++.|
T Consensus         4 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A            4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS   78 (79)
T ss_dssp             CCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred             CCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence            345566665  7777777777777776 4554 3666666  6666666666666666666554 6666666665

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=8.9e-14  Score=88.93  Aligned_cols=53  Identities=28%  Similarity=0.590  Sum_probs=28.5

Q ss_pred             cccccccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhhhhhhccCc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      |.|..|++.|.....|..|+++|. +++|+|++|++.|.....|..|+++|+++
T Consensus        15 ~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A           15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             EECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             ccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            555555555555555555555553 45555555555555555555555555443

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.40  E-value=1.8e-13  Score=89.73  Aligned_cols=49  Identities=20%  Similarity=0.529  Sum_probs=34.2

Q ss_pred             cccccccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhhhhhh
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNHHRRL  280 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~  280 (294)
                      |.|.+|++.|.....|..|+++|. ++||.|.+|++.|.+...|..|++.
T Consensus        29 h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~   78 (85)
T 2lv2_A           29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK   78 (85)
T ss_dssp             EECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHT
T ss_pred             EECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcc
Confidence            667777777777777777777664 6677777777777777777777543

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.40  E-value=1.5e-13  Score=83.53  Aligned_cols=53  Identities=26%  Similarity=0.569  Sum_probs=36.8

Q ss_pred             ccccccccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhhhhhhccC
Q psy6546         231 RHTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHD  283 (294)
Q Consensus       231 ~~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~  283 (294)
                      +|.|..|++.|.....|..|+++|. ++||.|++|++.|.....|..|+++||+
T Consensus         4 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            4 SRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             -CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            3677777777777777777777765 6677777777777777777777777663

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.40  E-value=5.3e-13  Score=85.74  Aligned_cols=57  Identities=32%  Similarity=0.674  Sum_probs=45.6

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHHHHHhhhc-cccc
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAY  259 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~  259 (294)
                      ++|.|..|++.|.....|..|+++|.+++ |.|..|++.|.....|..|+++|. ++||
T Consensus        16 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            47888888888888888888888887765 888888888888888888888885 6664

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=1.5e-13  Score=93.46  Aligned_cols=74  Identities=18%  Similarity=0.255  Sum_probs=52.7

Q ss_pred             cCCchHHHhHHhhcCC-CceeCCCCccccC-CHHHHHHHHHHhCC-Cc-cccccccccccCHHHHHHHHhhhc-ccccc
Q psy6546         187 FSCMPYLRQHQKLHSG-ITYSCPSCSKSFN-RKDRYRMHLKLHQG-VR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYV  260 (294)
Q Consensus       187 f~~~~~l~~H~~~h~~-~~~~C~~C~~~f~-~~~~l~~H~~~h~~-~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~  260 (294)
                      +.....+..|++.|.+ ++|.|.+|++.|. ....|..|+++|++ ++ |.|..|++.|.....|..|+++|. ++|+.
T Consensus         6 ~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~   84 (98)
T 2gqj_A            6 SGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSD   84 (98)
T ss_dssp             CCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSC
T ss_pred             CCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCC
Confidence            3344555667777765 4778888888887 77788888877776 44 788888888888888888877775 55543

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=1.2e-13  Score=86.70  Aligned_cols=52  Identities=35%  Similarity=0.770  Sum_probs=33.1

Q ss_pred             cccccccccccCHHHHHHHHhh-h--cccccccccccccccchhhhhhhhhhccC
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVL-H--DVRAYVCELCARQFTRVDHFNHHRRLQHD  283 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~-h--~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  283 (294)
                      |.|..|++.|.....|..|+++ |  .+++|.|+.|++.|.....|..|++++|+
T Consensus        11 ~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             eECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            6666666666666666666655 4  25666666666666666666666666654

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=1.1e-12  Score=83.66  Aligned_cols=59  Identities=37%  Similarity=0.738  Sum_probs=47.2

Q ss_pred             hhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHHHHHhhhcc
Q psy6546         198 KLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHDV  256 (294)
Q Consensus       198 ~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~  256 (294)
                      ++|.+ ++|.|++|++.|.....|..|+++|.+++ |.|..|++.|.....|..|+++|..
T Consensus         7 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~   67 (72)
T 1x6e_A            7 GIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS   67 (72)
T ss_dssp             CTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHS
T ss_pred             cccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            34554 48888888888888888888888887765 8888888888888888888888863

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=7.6e-13  Score=85.94  Aligned_cols=51  Identities=25%  Similarity=0.548  Sum_probs=29.4

Q ss_pred             cccccccccccCHHHHHHHHhhhc----ccccccccccccccchhhhhhhhhhcc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD----VRAYVCELCARQFTRVDHFNHHRRLQH  282 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~----~~~~~C~~C~~~f~~~~~l~~H~~~~h  282 (294)
                      |.|..|++.|.....|..|+++|.    +++|.|.+|++.|.....|..|++.+|
T Consensus         8 ~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H   62 (78)
T 2d9h_A            8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH   62 (78)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTS
T ss_pred             eECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhC
Confidence            555555555555555555555553    455666666666666666666654333

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.32  E-value=1.9e-12  Score=78.56  Aligned_cols=53  Identities=25%  Similarity=0.527  Sum_probs=35.2

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHHHHHhhhc
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD  255 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~  255 (294)
                      ++|.|++|++.|.+...|..|+++|.+++ |.|..|++.|.....|..|+++|.
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            46677777777777777777777666554 777777777777777777766653

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.32  E-value=2.4e-12  Score=78.05  Aligned_cols=52  Identities=27%  Similarity=0.581  Sum_probs=34.5

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHHHHHhhhc
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD  255 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~  255 (294)
                      ||.|+.|++.|.+...|..|+++|.+++ |.|..|++.|.....|..|+++|.
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   53 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA   53 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhc
Confidence            4566666666666666666666666654 666666666666666666666664

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=2.9e-12  Score=81.24  Aligned_cols=56  Identities=29%  Similarity=0.444  Sum_probs=44.2

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccc
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRA  258 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~  258 (294)
                      ++|.|.+|++.|.....|..|+++|.+++ |.|..|++.|.....|..|+++|. ++|
T Consensus         8 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            47888888888888888888888887765 888888888888888888887775 444

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.30  E-value=4.3e-12  Score=83.09  Aligned_cols=64  Identities=30%  Similarity=0.608  Sum_probs=53.0

Q ss_pred             hhcccCCCCCcccCCccCccccChHHHHHHHhhccCc-ccCCcccccccCChHhHHHHHh-hhCCC
Q psy6546          86 YLSRMSTTLTRHPCPQCSRDFATVKILKTHLKTHEGI-IYPCPECDKTFLSTSGLREHRK-VHAGV  149 (294)
Q Consensus        86 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~-~~~C~~C~~~f~~~~~l~~H~~-~h~~~  149 (294)
                      .........++|.|+.|++.|.....|..|+++|.+. ||.|.+|++.|.....|..|++ .|.++
T Consensus        18 ~~~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           18 GVLGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             SCCSSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            3345566678899999999999999999999999874 8999999999999999999974 56554

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.30  E-value=1.3e-12  Score=84.64  Aligned_cols=62  Identities=23%  Similarity=0.515  Sum_probs=50.1

Q ss_pred             HhHHhhcCC-CceeCCCCccccCCHHHHHHHHH-HhCCC--ccccccccccccCHHHHHHHHhhhc
Q psy6546         194 RQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLK-LHQGV--RHTCKECSKEFSNEYNLKNHMVLHD  255 (294)
Q Consensus       194 ~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~-~h~~~--~~~C~~C~~~f~~~~~l~~H~~~h~  255 (294)
                      ..|+++|.+ ++|.|++|++.|.....|..|++ .|.+.  +|.|..|++.|.....|..|+++|.
T Consensus         4 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H   69 (77)
T 2ct1_A            4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH   69 (77)
T ss_dssp             CCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhC
Confidence            457777776 48899999999999999999987 56653  4899999999999999999988764

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.29  E-value=2.5e-12  Score=78.91  Aligned_cols=47  Identities=36%  Similarity=0.765  Sum_probs=31.7

Q ss_pred             cccccccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhhhh
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNHHR  278 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~  278 (294)
                      |.|..|++.|.....|..|+++|. +++|.|+.|++.|.....|..|+
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   50 (60)
T 2adr_A            3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA   50 (60)
T ss_dssp             BCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHH
T ss_pred             CcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHH
Confidence            566666666666666666666664 56667777777777777777775

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=1.2e-14  Score=93.21  Aligned_cols=66  Identities=18%  Similarity=0.335  Sum_probs=46.8

Q ss_pred             HHHHHHHHhCCCc-cccccccccccCHHHHHHHHhhhcccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         219 RYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHDVRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       219 ~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      .|..|+++|.+++ |.|..|++.|.....|..      +++|.|+.|++.|.....|..|+++|+++++|+|.
T Consensus         5 ~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~   71 (73)
T 2ctu_A            5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPS   71 (73)
T ss_dssp             SCCCCCCCCCCCSEEECSSSCCEEECCCCCCC------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCC
T ss_pred             hHHHHHHHhCCCCCeeCCcccchhCCHHHhCc------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCC
Confidence            3445555565544 666666666666666555      67788888888888888888888888888888774

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=3.1e-12  Score=86.41  Aligned_cols=59  Identities=19%  Similarity=0.273  Sum_probs=32.0

Q ss_pred             cccccccccccCHHHHHHHHhh-hc-ccc--------cccccccccccchhhhhhhhhhccCccccccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVL-HD-VRA--------YVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~-h~-~~~--------~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |.|..|++.|.....|..|+++ |. +++        |.|.+|++.|.....|..|+++|+++++|+|.
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            3444444444444444444444 32 222        56666666666666666666666666666553

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.25  E-value=8.8e-12  Score=76.37  Aligned_cols=52  Identities=23%  Similarity=0.657  Sum_probs=38.3

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHHHHH-hhhc
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHM-VLHD  255 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~-~~h~  255 (294)
                      ||.|+.|++.|.....|..|+++|.+++ |.|..|++.|.....|..|+ ++|.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcC
Confidence            6777777777777777777777777655 77777777777777777775 5664

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.23  E-value=7.9e-12  Score=78.21  Aligned_cols=53  Identities=28%  Similarity=0.612  Sum_probs=35.4

Q ss_pred             CceeCCCCccccCCHHHHHHHHHH-h-CCCc-cccccccccccCHHHHHHHHhhhc
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKL-H-QGVR-HTCKECSKEFSNEYNLKNHMVLHD  255 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~-h-~~~~-~~C~~C~~~f~~~~~l~~H~~~h~  255 (294)
                      ++|.|+.|++.|.+...|..|++. | .+++ |.|..|++.|.....|..|+++|.
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H   64 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH   64 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHc
Confidence            367777777777777777777766 4 2333 777777777777777777766553

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=2.4e-14  Score=91.82  Aligned_cols=69  Identities=19%  Similarity=0.264  Sum_probs=59.2

Q ss_pred             chHHHhHHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCccccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         190 MPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       190 ~~~l~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      ...|..|+++|.+ ++|.|++|++.|.....|..      ..+|.|..|++.|.....|..|+++|. +++|.|++|
T Consensus         3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             chhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            4567778888877 48999999999998887766      455999999999999999999999996 889999987

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=1.4e-11  Score=83.07  Aligned_cols=59  Identities=24%  Similarity=0.470  Sum_probs=49.3

Q ss_pred             ceeCCCCccccCCHHHHHHHHHH-hCCCc---------cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKL-HQGVR---------HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~---------~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      .+.|..|++.|.....|..|+++ |.+.+         |.|..|++.|.....|..|+++|. ++||.|+
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            46688888888888888888887 76654         789999999999999999999986 8889886

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.19  E-value=1.3e-11  Score=78.87  Aligned_cols=50  Identities=32%  Similarity=0.809  Sum_probs=27.5

Q ss_pred             cccc--cccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhhhhhhc
Q psy6546         232 HTCK--ECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQ  281 (294)
Q Consensus       232 ~~C~--~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~  281 (294)
                      |.|.  .|++.|.....|..|+++|. +++|.|++|++.|.....|..|+++|
T Consensus        20 ~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             EECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             cCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            5554  35555555555555555553 45555555555555555555555544

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=1.9e-11  Score=76.43  Aligned_cols=53  Identities=17%  Similarity=0.319  Sum_probs=34.3

Q ss_pred             cccccccccccCHHHHHHHHhhhcccccccc-cccccccchhhhhhhhhhccCcc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHDVRAYVCE-LCARQFTRVDHFNHHRRLQHDPE  285 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~-~C~~~f~~~~~l~~H~~~~h~~~  285 (294)
                      |.|..|++.|. ...|..|+++..++||.|+ .|++.|.....|..|+++|-+..
T Consensus        11 ~~C~~C~k~f~-~~~L~~H~~~~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~   64 (66)
T 2eod_A           11 QPCTYCTKEFV-FDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTA   64 (66)
T ss_dssp             EECSSSCCEEE-HHHHHHHHHHCSSSEEECTTCCSCCEEETTTHHHHHHTTSSSC
T ss_pred             eeccccCCccC-HHHHHHHHHHcCCcCccCCcccCcccccHHHHHHHHHhhcccC
Confidence            66666666666 6666666666336666676 67777766666777766665543

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.12  E-value=6.1e-11  Score=75.70  Aligned_cols=52  Identities=35%  Similarity=0.867  Sum_probs=45.0

Q ss_pred             CceeCC--CCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHHHHHhhh
Q psy6546         203 ITYSCP--SCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH  254 (294)
Q Consensus       203 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h  254 (294)
                      ++|.|+  .|++.|.....|..|+++|.+++ |.|..|++.|.....|..|+++|
T Consensus        18 ~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             CccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            488996  59999999999999998888766 99999999999999999998877

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=6.9e-11  Score=76.54  Aligned_cols=55  Identities=24%  Similarity=0.459  Sum_probs=39.9

Q ss_pred             CCCCCcccCCccCccccChHHHHHHHhhccC----cccCCcccccccCChHhHHHHHhh
Q psy6546          91 STTLTRHPCPQCSRDFATVKILKTHLKTHEG----IIYPCPECDKTFLSTSGLREHRKV  145 (294)
Q Consensus        91 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~----~~~~C~~C~~~f~~~~~l~~H~~~  145 (294)
                      +.++++|.|..|++.|.....|..|++.|.+    ++|.|.+|++.|.....|..|++.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~   60 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK   60 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHH
Confidence            3456777787788888777777777777763    477777777777777777777743

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=1.2e-10  Score=72.73  Aligned_cols=51  Identities=22%  Similarity=0.285  Sum_probs=44.3

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCCc-cccc-cccccccCHHHHHHHHhhhc
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCK-ECSKEFSNEYNLKNHMVLHD  255 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~-~C~~~f~~~~~l~~H~~~h~  255 (294)
                      ++|.|..|++.|. .+.|..|+++ .+++ |.|. .|++.|...+.|..|+++|.
T Consensus         9 ~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc   61 (66)
T 2eod_A            9 RTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSC   61 (66)
T ss_dssp             CEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTS
T ss_pred             CCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhc
Confidence            5889999999999 8999999888 6655 9999 89999999999999998885

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.02  E-value=1.7e-10  Score=73.37  Aligned_cols=50  Identities=22%  Similarity=0.593  Sum_probs=24.8

Q ss_pred             ceeCCC--CccccCCHHHHHHHHHHhCCCc-ccccc--ccccccCHHHHHHHHhh
Q psy6546         204 TYSCPS--CSKSFNRKDRYRMHLKLHQGVR-HTCKE--CSKEFSNEYNLKNHMVL  253 (294)
Q Consensus       204 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~~-~~C~~--C~~~f~~~~~l~~H~~~  253 (294)
                      +|.|..  |++.|.....|..|+++|.+++ |.|..  |++.|.....|..|+++
T Consensus        17 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           17 SHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             ceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence            455544  5555555555555555554433 55532  55555555555555443

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.01  E-value=3.5e-10  Score=71.88  Aligned_cols=50  Identities=34%  Similarity=0.794  Sum_probs=44.4

Q ss_pred             ccccc--ccccccCHHHHHHHHhhhc-cccccccc--ccccccchhhhhhhhhhc
Q psy6546         232 HTCKE--CSKEFSNEYNLKNHMVLHD-VRAYVCEL--CARQFTRVDHFNHHRRLQ  281 (294)
Q Consensus       232 ~~C~~--C~~~f~~~~~l~~H~~~h~-~~~~~C~~--C~~~f~~~~~l~~H~~~~  281 (294)
                      |.|..  |++.|.....|..|+++|. +++|+|.+  |++.|.....|..|+++|
T Consensus        18 ~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             EECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             eeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            89988  9999999999999999996 88999965  999999999999998775

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.99  E-value=3.2e-11  Score=72.09  Aligned_cols=50  Identities=12%  Similarity=0.160  Sum_probs=39.9

Q ss_pred             ccccCHHHHHHHHhhhc-ccccccccccccccchhhhhhhhhhccCccccc
Q psy6546         239 KEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFE  288 (294)
Q Consensus       239 ~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  288 (294)
                      +.|.....|..|+++|. +++|.|.+|++.|...+.|..|+++|+++++|.
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            56777777888888886 778888888888888888888888888887763

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=7.1e-11  Score=66.49  Aligned_cols=41  Identities=12%  Similarity=0.270  Sum_probs=32.3

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. ++||.|++|++.|.+...|..|+++|.++++|+|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            445665 77888888888888888888888888888888774

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.2e-10  Score=67.01  Aligned_cols=34  Identities=24%  Similarity=0.562  Sum_probs=13.9

Q ss_pred             ccccccccccccccchhhhhhhhhhccCcccccc
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEK  289 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  289 (294)
                      +++|.|++|++.|.....|..|+++|+++++|.|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytn_A           10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP   43 (46)
T ss_dssp             CSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSC
T ss_pred             CcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCC
Confidence            3344444444444444444444444444444433

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.96  E-value=1.4e-10  Score=66.69  Aligned_cols=23  Identities=43%  Similarity=0.777  Sum_probs=8.9

Q ss_pred             cccccccccccCHHHHHHHHhhh
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLH  254 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h  254 (294)
                      |.|..|++.|.....|..|+++|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2emk_A           13 YECKECGKAFSQTTHLIQHQRVH   35 (46)
T ss_dssp             CBCSSSCCBCSCHHHHHHHHHHH
T ss_pred             eECCCCCchhCCHHHHHHHHHHc
Confidence            33333333333333333333333

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.2e-10  Score=67.02  Aligned_cols=33  Identities=18%  Similarity=0.531  Sum_probs=13.4

Q ss_pred             cccccccccccccchhhhhhhhhhccCcccccc
Q psy6546         257 RAYVCELCARQFTRVDHFNHHRRLQHDPEEFEK  289 (294)
Q Consensus       257 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  289 (294)
                      ++|.|++|++.|.....|..|+++|+++++|+|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emf_A           11 KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP   43 (46)
T ss_dssp             CCEECSSSCCEESCHHHHHHHGGGTSCSSCSCC
T ss_pred             CCeECCCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            334444444444444444444444444444433

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.2e-10  Score=66.92  Aligned_cols=26  Identities=31%  Similarity=0.658  Sum_probs=10.5

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCC
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQG  229 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~  229 (294)
                      +|.|++|++.|...+.|..|+++|.+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2emm_A           12 PHKCNECGKSFIQSAHLIQHQRIHTG   37 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHHSC
T ss_pred             CeeCCCCChhhCCHHHHHHHHHHhCC
Confidence            34444444444444444444443333

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.96  E-value=1.1e-10  Score=65.79  Aligned_cols=41  Identities=20%  Similarity=0.319  Sum_probs=31.3

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|.|++|++.|.+...|..|+++|+++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            445664 67888888888888888888888888888887773

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=1.2e-10  Score=66.22  Aligned_cols=24  Identities=29%  Similarity=0.739  Sum_probs=8.9

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHh
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLH  227 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h  227 (294)
                      +|.|++|++.|...+.|..|+++|
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~H   33 (44)
T 2emx_A           10 PFGCSCCEKAFSSKSYLLVHQQTH   33 (44)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHHHh
Confidence            333333333333333333333333

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.4e-10  Score=66.76  Aligned_cols=32  Identities=31%  Similarity=0.540  Sum_probs=13.6

Q ss_pred             cccccccccccCHHHHHHHHhhhc-cccccccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCEL  263 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~  263 (294)
                      |.|..|++.|.....|..|+++|. ++||+|++
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoe_A           13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS   45 (46)
T ss_dssp             SEETTTTEECSSHHHHHHHHGGGSCCCSCSSCC
T ss_pred             eECCCcChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            444444444444444444444443 34444443

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.5e-10  Score=66.55  Aligned_cols=20  Identities=45%  Similarity=0.723  Sum_probs=7.2

Q ss_pred             ccccccccccCHHHHHHHHh
Q psy6546         233 TCKECSKEFSNEYNLKNHMV  252 (294)
Q Consensus       233 ~C~~C~~~f~~~~~l~~H~~  252 (294)
                      .|..|++.|.....|..|++
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq4_A           14 NCKECGKSFSRAPCLLKHER   33 (46)
T ss_dssp             CBTTTTBCCSCHHHHHHHHH
T ss_pred             ECCCCCCccCchHHHHHHHH
Confidence            33333333333333333333

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=1.7e-10  Score=66.37  Aligned_cols=32  Identities=22%  Similarity=0.411  Sum_probs=13.3

Q ss_pred             cccccccccccCHHHHHHHHhhhc-cccccccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCEL  263 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~  263 (294)
                      |.|..|++.|.....|..|+++|. ++||.|++
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2elz_A           13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS   45 (46)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCC
T ss_pred             eeCcccCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            444444444444444444444443 33444443

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.95  E-value=4e-10  Score=67.20  Aligned_cols=38  Identities=26%  Similarity=0.542  Sum_probs=19.2

Q ss_pred             cccccccccccCHHHHHHHHh-hhc-cccccccccccccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMV-LHD-VRAYVCELCARQFT  269 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~-~h~-~~~~~C~~C~~~f~  269 (294)
                      |.|..|++.|.....|..|++ +|. +++|.|.+|++.|.
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~   52 (54)
T 2eps_A           13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS   52 (54)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred             eECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence            455555555555555555543 443 44555555555554

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=1.3e-10  Score=66.88  Aligned_cols=23  Identities=35%  Similarity=0.707  Sum_probs=8.4

Q ss_pred             cccccccccccCHHHHHHHHhhh
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLH  254 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h  254 (294)
                      |.|..|++.|...+.|..|+++|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ene_A           13 YKCNECGKVFRHNSYLSRHQRIH   35 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHTTT
T ss_pred             eECCCCCchhCChHHHHHHHhhc
Confidence            33333333333333333333333

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.95  E-value=1.2e-10  Score=66.96  Aligned_cols=23  Identities=43%  Similarity=0.739  Sum_probs=8.3

Q ss_pred             cccccccccccCHHHHHHHHhhh
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLH  254 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h  254 (294)
                      |.|..|++.|.....|..|+++|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ely_A           13 FKCVECGKGFSRRSALNVHHKLH   35 (46)
T ss_dssp             BCCSSSCCCBSSTTHHHHHHHHH
T ss_pred             cccCccCcccCCHHHHHHHHHHc
Confidence            33333333333333333333333

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.95  E-value=1.5e-10  Score=66.57  Aligned_cols=23  Identities=39%  Similarity=0.769  Sum_probs=8.6

Q ss_pred             cccccccccccCHHHHHHHHhhh
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLH  254 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h  254 (294)
                      |.|..|++.|.....|..|+++|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ema_A           13 YKCNECGKVFSRNSQLSQHQKIH   35 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHTGG
T ss_pred             cCCCCCcchhCCHHHHHHHHHhc
Confidence            33333333333333333333333

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=1.5e-10  Score=66.60  Aligned_cols=32  Identities=22%  Similarity=0.504  Sum_probs=12.2

Q ss_pred             cccccccccccccchhhhhhhhhhccCccccc
Q psy6546         257 RAYVCELCARQFTRVDHFNHHRRLQHDPEEFE  288 (294)
Q Consensus       257 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  288 (294)
                      ++|.|++|++.|.....|..|+++|+++++|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2epz_A           11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSG   42 (46)
T ss_dssp             CSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCS
T ss_pred             CCeECCCCCceeCCHHHHHHHHHHhCCCCCCC
Confidence            33333333333333333333333333333333

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=1.4e-10  Score=66.69  Aligned_cols=23  Identities=35%  Similarity=0.670  Sum_probs=8.3

Q ss_pred             cccccccccccCHHHHHHHHhhh
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLH  254 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h  254 (294)
                      |.|..|++.|.....|..|+++|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eml_A           13 YECSVCGKAFSHRQSLSVHQRIH   35 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHGGG
T ss_pred             eeCCCcCCccCCHHHHHHHHHHh
Confidence            33333333333333333333333

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=1.4e-10  Score=66.72  Aligned_cols=32  Identities=31%  Similarity=0.461  Sum_probs=13.0

Q ss_pred             cccccccccccCHHHHHHHHhhhc-cccccccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCEL  263 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~  263 (294)
                      |.|..|++.|.....|..|+++|. ++||+|++
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emp_A           13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             EECSSSCCEESCHHHHHHHHHHHHCCSCCSCCC
T ss_pred             eECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            444444444444444444444442 33444433

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=1.7e-10  Score=66.35  Aligned_cols=23  Identities=43%  Similarity=0.683  Sum_probs=8.8

Q ss_pred             cccccccccccCHHHHHHHHhhh
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLH  254 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h  254 (294)
                      |.|..|++.|.....|..|+++|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ytq_A           13 YGCSECGKAFSSKSYLIIHMRTH   35 (46)
T ss_dssp             CBCSSSCCBCSCHHHHHHHHTTT
T ss_pred             cCCCccChhhCChHHHHHHHHHh
Confidence            33333333333333333333333

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.95  E-value=1.6e-10  Score=66.48  Aligned_cols=34  Identities=12%  Similarity=0.351  Sum_probs=14.2

Q ss_pred             ccccccccccccccchhhhhhhhhhccCcccccc
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEK  289 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  289 (294)
                      +++|.|++|++.|.+...|..|+++|+++++|+|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em0_A           10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP   43 (46)
T ss_dssp             CCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCS
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCC
Confidence            3344444444444444444444444444444433

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=1.4e-10  Score=66.76  Aligned_cols=32  Identities=25%  Similarity=0.425  Sum_probs=12.7

Q ss_pred             cccccccccccCHHHHHHHHhhhc-cccccccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCEL  263 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~  263 (294)
                      |.|..|++.|.....|..|+++|. ++||.|++
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emh_A           13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHHCSSCSSSCC
T ss_pred             cCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            344444444444444444443332 33444433

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=1.5e-10  Score=66.54  Aligned_cols=23  Identities=35%  Similarity=0.713  Sum_probs=8.9

Q ss_pred             cccccccccccCHHHHHHHHhhh
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLH  254 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h  254 (294)
                      |.|..|++.|.....|..|+++|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em7_A           13 YKCEECGKGFICRRDLYTHHMVH   35 (46)
T ss_dssp             EECSSSCCEESCHHHHHHHGGGG
T ss_pred             ccCCCccchhCCHHHHHHHHHHh
Confidence            33333333333333333333333

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=1.8e-10  Score=66.23  Aligned_cols=25  Identities=48%  Similarity=0.950  Sum_probs=9.7

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhC
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQ  228 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~  228 (294)
                      +|.|++|++.|...+.|..|+++|.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eov_A           12 PYKCSDCGKSFTWKSRLRIHQKCHT   36 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHHHHS
T ss_pred             CccCCccChhhCCHHHHHHHHHhcC
Confidence            3333333333333333333333333

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=1.8e-10  Score=66.18  Aligned_cols=20  Identities=30%  Similarity=0.723  Sum_probs=7.1

Q ss_pred             eeCCCCccccCCHHHHHHHH
Q psy6546         205 YSCPSCSKSFNRKDRYRMHL  224 (294)
Q Consensus       205 ~~C~~C~~~f~~~~~l~~H~  224 (294)
                      |.|++|++.|...+.|..|+
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~   32 (46)
T 2ytj_A           13 YICAECGKAFTIRSNLIKHQ   32 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHH
T ss_pred             eECCCCChhhCCHHHHHHHH
Confidence            33333333333333333333

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.4e-10  Score=66.76  Aligned_cols=31  Identities=23%  Similarity=0.565  Sum_probs=11.6

Q ss_pred             ccccccccccccchhhhhhhhhhccCccccc
Q psy6546         258 AYVCELCARQFTRVDHFNHHRRLQHDPEEFE  288 (294)
Q Consensus       258 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  288 (294)
                      +|.|++|++.|.....|..|+++|+++++|.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2eq0_A           12 PYKCHECGKVFRRNSHLARHQLIHTGEKPSG   42 (46)
T ss_dssp             CEECTTTCCEESSHHHHHHHHTTTCCCCCSC
T ss_pred             CeECCCCCchhCCHHHHHHHHHHcCCCCCCC
Confidence            3333333333333333333333333333333

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.5e-10  Score=66.53  Aligned_cols=25  Identities=36%  Similarity=0.763  Sum_probs=10.0

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhC
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQ  228 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~  228 (294)
                      +|.|++|++.|...+.|..|+++|.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2emy_A           12 PYECHECGKAFSRKYQLISHQRTHA   36 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHT
T ss_pred             CcCCCCCCcccCcHHHHHHHHHHcC
Confidence            3444444444444444444433333

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.6e-10  Score=66.45  Aligned_cols=32  Identities=28%  Similarity=0.461  Sum_probs=13.1

Q ss_pred             cccccccccccCHHHHHHHHhhhc-cccccccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCEL  263 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~  263 (294)
                      |.|..|++.|.....|..|+++|. ++||.|++
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytr_A           13 YKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             TCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCC
T ss_pred             cCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            444444444444444444444442 33444433

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.6e-10  Score=66.47  Aligned_cols=25  Identities=28%  Similarity=0.776  Sum_probs=9.9

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhC
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQ  228 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~  228 (294)
                      +|.|++|++.|..++.|..|+++|.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytk_A           12 PYKCNECGKVFTQNSHLTNHWRIHT   36 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             CEeCCcCCCccCCHHHHHHHHHHHC
Confidence            3334334433333333333333333

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.5e-10  Score=65.09  Aligned_cols=40  Identities=15%  Similarity=0.325  Sum_probs=34.8

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCcccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEK  289 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  289 (294)
                      |+++|. +++|.|++|++.|.....|..|+++|+++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            566775 7899999999999999999999999999998876

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2e-10  Score=66.04  Aligned_cols=23  Identities=30%  Similarity=0.579  Sum_probs=8.6

Q ss_pred             cccccccccccCHHHHHHHHhhh
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLH  254 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h  254 (294)
                      |.|..|++.|.....|..|+++|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eme_A           13 YVCDYCGKAFGLSAELVRHQRIH   35 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHGGG
T ss_pred             eECCCCChhhCCHHHHHHHHHhc
Confidence            33333333333333333333333

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.8e-10  Score=66.20  Aligned_cols=18  Identities=33%  Similarity=0.779  Sum_probs=6.4

Q ss_pred             ccccccccccCHHHHHHH
Q psy6546         233 TCKECSKEFSNEYNLKNH  250 (294)
Q Consensus       233 ~C~~C~~~f~~~~~l~~H  250 (294)
                      .|..|++.|.....|..|
T Consensus        14 ~C~~C~k~f~~~~~L~~H   31 (46)
T 2eoq_A           14 KCDICGKSFCGRSRLNRH   31 (46)
T ss_dssp             CCSSSCCCCSSHHHHHHH
T ss_pred             CCCcCCchhCCHHHHHHH
Confidence            333333333333333333

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.9e-10  Score=66.17  Aligned_cols=33  Identities=21%  Similarity=0.600  Sum_probs=13.3

Q ss_pred             cccccccccccccchhhhhhhhhhccCcccccc
Q psy6546         257 RAYVCELCARQFTRVDHFNHHRRLQHDPEEFEK  289 (294)
Q Consensus       257 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  289 (294)
                      ++|.|++|++.|.....|..|+++|+++++|+|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2en1_A           11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP   43 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGGSCCCCSCC
T ss_pred             CCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            334444444444444444444444444443333

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.94  E-value=1.4e-10  Score=66.65  Aligned_cols=34  Identities=24%  Similarity=0.461  Sum_probs=14.7

Q ss_pred             ccccccccccccccchhhhhhhhhhccCcccccc
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEK  289 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  289 (294)
                      +++|.|++|++.|.+...|..|+++|+++++|.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2el4_A           10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP   43 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCC
T ss_pred             CCceECCCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            3344444444444444444444444444444443

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.8e-10  Score=66.25  Aligned_cols=33  Identities=15%  Similarity=0.371  Sum_probs=13.3

Q ss_pred             cccccccccccccchhhhhhhhhhccCcccccc
Q psy6546         257 RAYVCELCARQFTRVDHFNHHRRLQHDPEEFEK  289 (294)
Q Consensus       257 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  289 (294)
                      ++|.|++|++.|.+...|..|+++|+++++|.|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eop_A           11 KPHECRECGKSFSFNSQLIVHQRIHTGENPSGP   43 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCC
T ss_pred             CCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            334444444444444444444444444443333

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=1.5e-10  Score=66.61  Aligned_cols=23  Identities=35%  Similarity=0.852  Sum_probs=8.3

Q ss_pred             cccccccccccCHHHHHHHHhhh
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLH  254 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h  254 (294)
                      |.|..|++.|.....|..|+++|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em5_A           13 HQCHECGRGFTLKSHLNQHQRIH   35 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHTTT
T ss_pred             eECCcCCCccCCHHHHHHHHHHh
Confidence            33333333333333333333333

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.8e-10  Score=66.23  Aligned_cols=33  Identities=27%  Similarity=0.403  Sum_probs=14.9

Q ss_pred             cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      |.|..|++.|.....|..|+++|. ++||.|++|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A           13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             cCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            444444444444444444444443 444444443

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.5e-10  Score=66.52  Aligned_cols=23  Identities=35%  Similarity=0.720  Sum_probs=8.6

Q ss_pred             cccccccccccCHHHHHHHHhhh
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLH  254 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h  254 (294)
                      |.|..|++.|...+.|..|+++|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2eoo_A           13 YGCNECGKNFGRHSHLIEHLKRH   35 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHH
T ss_pred             EEccccCcccCCHHHHHHHHHHH
Confidence            33333333333333333333333

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.93  E-value=1.8e-10  Score=66.19  Aligned_cols=30  Identities=20%  Similarity=0.526  Sum_probs=11.1

Q ss_pred             ccccccccccccchhhhhhhhhhccCcccc
Q psy6546         258 AYVCELCARQFTRVDHFNHHRRLQHDPEEF  287 (294)
Q Consensus       258 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~  287 (294)
                      +|.|++|++.|.....|..|+++|+++++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2em9_A           12 PYNCKECGKSFRWASCLLKHQRVHSGEKPS   41 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHGGGGTSCCCC
T ss_pred             CeECCccccccCChHHHHHHHHHhCCCCCC
Confidence            333333333333333333333333333333

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=1.6e-10  Score=65.06  Aligned_cols=40  Identities=18%  Similarity=0.429  Sum_probs=33.2

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCcccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEK  289 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  289 (294)
                      |+++|. ++||.|++|++.|...+.|..|+++|+++++|+|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            456675 7888898899999888888889888888888876

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.93  E-value=2.2e-11  Score=75.08  Aligned_cols=55  Identities=11%  Similarity=0.300  Sum_probs=41.2

Q ss_pred             HHHHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhhhh
Q psy6546         221 RMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNHHR  278 (294)
Q Consensus       221 ~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~  278 (294)
                      ..|+++|.+++ |.|..|++.|.....|.   ++|. ++||+|++|++.|....++..+.
T Consensus         3 ~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~~~~   59 (62)
T 1vd4_A            3 ETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAMPKK   59 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCSCCC
T ss_pred             hhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccccccc
Confidence            34666677665 88888888888877776   6775 77888888888888887776553

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2e-10  Score=66.00  Aligned_cols=24  Identities=25%  Similarity=0.852  Sum_probs=8.5

Q ss_pred             cccccccccccchhhhhhhhhhcc
Q psy6546         259 YVCELCARQFTRVDHFNHHRRLQH  282 (294)
Q Consensus       259 ~~C~~C~~~f~~~~~l~~H~~~~h  282 (294)
                      |.|++|++.|.....|..|+++|+
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ep2_A           13 YECSICGKSFTKKSQLHVHQQIHT   36 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHHTTS
T ss_pred             cCCCCCCcccCCHHHHHHHHHHhC
Confidence            333333333333333333333333

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=1.9e-10  Score=66.09  Aligned_cols=26  Identities=35%  Similarity=0.905  Sum_probs=10.8

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCC
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQG  229 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~  229 (294)
                      +|.|++|++.|...+.|..|+++|.+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ytd_A           12 PYKCSECGKAFHRHTHLNEHRRIHTG   37 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHHTC
T ss_pred             CeECCCCCCeeCChHHHHHHHHHcCC
Confidence            34444444444444444444444433

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=1.8e-10  Score=66.24  Aligned_cols=23  Identities=39%  Similarity=0.660  Sum_probs=8.5

Q ss_pred             cccccccccccCHHHHHHHHhhh
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLH  254 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h  254 (294)
                      |.|..|++.|.....|..|+++|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2en6_A           13 YGCNECGKTFSQKSILSAHQRTH   35 (46)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             eECCCCCcccCchHHHHHHHHHc
Confidence            33333333333333333333333

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=1.5e-10  Score=66.53  Aligned_cols=30  Identities=17%  Similarity=0.512  Sum_probs=11.1

Q ss_pred             ccccccccccccchhhhhhhhhhccCcccc
Q psy6546         258 AYVCELCARQFTRVDHFNHHRRLQHDPEEF  287 (294)
Q Consensus       258 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~  287 (294)
                      +|.|++|++.|.+...|..|+++|+++++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2ysp_A           12 PYKCEKCGKGYNSKFNLDMHQKVHTGERPS   41 (46)
T ss_dssp             SEEETTTTEEESCHHHHHHHHTTSCSCCSS
T ss_pred             CeECCCCCCccCCHHHHHHHHHhhCCCCCC
Confidence            333333333333333333333333333333

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=2.3e-10  Score=65.79  Aligned_cols=26  Identities=27%  Similarity=0.696  Sum_probs=10.5

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCC
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQG  229 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~  229 (294)
                      +|.|++|++.|...+.|..|+++|.+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2enc_A           12 PFKCEECGKGFYTNSQCYSHQRSHSG   37 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHSCC
T ss_pred             CcCCCCCCCcCCChHHHHHHHHHhCC
Confidence            34444444444444444444444333

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=2.4e-10  Score=65.71  Aligned_cols=25  Identities=24%  Similarity=0.389  Sum_probs=9.8

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhC
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQ  228 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~  228 (294)
                      +|.|++|++.|...+.|..|+++|.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2yso_A           12 SHQCRECGEIFFQYVSLIEHQVLHM   36 (46)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             CEEccccChhhCCHHHHHHHHHHhC
Confidence            3333333333333333333333333

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=1.5e-10  Score=66.63  Aligned_cols=30  Identities=30%  Similarity=0.681  Sum_probs=11.1

Q ss_pred             ccccccccccccchhhhhhhhhhccCcccc
Q psy6546         258 AYVCELCARQFTRVDHFNHHRRLQHDPEEF  287 (294)
Q Consensus       258 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~  287 (294)
                      +|.|++|++.|.....|..|+++|+++++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2yu8_A           12 PYKCNECGKVFTQNSHLARHRRVHTGGKPS   41 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHTHHHHSCCCS
T ss_pred             CeECCcCCchhCCHHHHHHHHHhcCCCCCC
Confidence            333333333333333333333333333333

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=2.1e-10  Score=65.90  Aligned_cols=42  Identities=17%  Similarity=0.346  Sum_probs=31.3

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCcccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKVG  291 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  291 (294)
                      |+++|. +++|.|.+|++.|.....|..|+++|+++++|+|..
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            556665 677778778888877777888877777777777753

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=2e-10  Score=66.01  Aligned_cols=32  Identities=16%  Similarity=0.460  Sum_probs=12.4

Q ss_pred             cccccccccccccchhhhhhhhhhccCccccc
Q psy6546         257 RAYVCELCARQFTRVDHFNHHRRLQHDPEEFE  288 (294)
Q Consensus       257 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  288 (294)
                      ++|.|++|++.|.....|..|+++|+++++|+
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2en8_A           11 KSHTCDECGKNFCYISALRIHQRVHMGEKCSG   42 (46)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHTTTCCSCSSC
T ss_pred             CCeECCCcCcccCCHHHHHHHHHHhCCCCCCC
Confidence            33333333333333333333333333333333

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=1.5e-10  Score=65.89  Aligned_cols=41  Identities=17%  Similarity=0.242  Sum_probs=33.5

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. ++||.|++|++.|.....|..|+++|+++++|+|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            566775 78888888888888888888888888888888773

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=1.9e-10  Score=66.15  Aligned_cols=30  Identities=20%  Similarity=0.411  Sum_probs=11.1

Q ss_pred             ccccccccccccchhhhhhhhhhccCcccc
Q psy6546         258 AYVCELCARQFTRVDHFNHHRRLQHDPEEF  287 (294)
Q Consensus       258 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~  287 (294)
                      +|.|++|++.|.+...|..|+++|+++++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2epw_A           12 PCKCTECGKAFCWKSQLIMHQRTHVDDKHS   41 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHHHHCCSCCCS
T ss_pred             CeeCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            333333333333333333333333333333

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=2.1e-10  Score=65.99  Aligned_cols=41  Identities=20%  Similarity=0.474  Sum_probs=29.9

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|.|.+|++.|.....|..|+++|+++++|+|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455664 67777777777777777777777777777777764

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.91  E-value=2.9e-10  Score=65.35  Aligned_cols=23  Identities=35%  Similarity=0.709  Sum_probs=8.6

Q ss_pred             cccccccccccCHHHHHHHHhhh
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLH  254 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h  254 (294)
                      |.|..|++.|.....|..|+++|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2el6_A           13 YKCSQCEKSFSGKLRLLVHQRMH   35 (46)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGG
T ss_pred             eECCCCCcccCCHHHHHHHHHHc
Confidence            33333333333333333333333

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=2.1e-10  Score=65.94  Aligned_cols=41  Identities=20%  Similarity=0.375  Sum_probs=30.6

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|.|++|++.|.....|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            556665 67777777777777777777777777777777775

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.90  E-value=2.1e-10  Score=65.97  Aligned_cols=43  Identities=21%  Similarity=0.241  Sum_probs=38.8

Q ss_pred             HHHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         222 MHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       222 ~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      +|+++|.+++ |.|..|++.|.....|..|+++|. ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            3667788766 999999999999999999999996 899999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=2.5e-10  Score=65.59  Aligned_cols=42  Identities=21%  Similarity=0.316  Sum_probs=38.4

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            667788776 999999999999999999999996 899999987

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=2.1e-10  Score=65.93  Aligned_cols=41  Identities=15%  Similarity=0.370  Sum_probs=30.2

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|.|.+|++.|.....|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            556664 67777777777777777777777777777777764

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=2.2e-10  Score=65.89  Aligned_cols=42  Identities=21%  Similarity=0.308  Sum_probs=38.4

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            667788776 999999999999999999999996 899999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=7.2e-10  Score=63.62  Aligned_cols=42  Identities=26%  Similarity=0.375  Sum_probs=36.6

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            566777766 999999999999999999999996 889999887

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=1.4e-10  Score=66.66  Aligned_cols=40  Identities=13%  Similarity=0.351  Sum_probs=21.9

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCcccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEK  289 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  289 (294)
                      |+++|. +++|.|++|++.|.....|..|+++|+++++|.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCS
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            344443 4555555555555555555555555555555555

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=1.6e-10  Score=66.46  Aligned_cols=42  Identities=19%  Similarity=0.388  Sum_probs=30.4

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCcccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKVG  291 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  291 (294)
                      |+++|. +++|.|++|++.|.+...|..|+++|+++++|+|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            556664 677777777777777777777777777777777753

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=1.7e-10  Score=66.30  Aligned_cols=41  Identities=17%  Similarity=0.301  Sum_probs=29.7

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. ++||+|++|++.|.....|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            556664 66777777777777777777777777777777765

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=1.6e-10  Score=65.70  Aligned_cols=42  Identities=19%  Similarity=0.419  Sum_probs=35.8

Q ss_pred             HHHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         249 NHMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       249 ~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      .|+++|. +++|.|++|++.|.....|..|+++|+++++|+|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3667775 78899999999999999999999999999998884

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.90  E-value=2e-10  Score=64.59  Aligned_cols=40  Identities=18%  Similarity=0.311  Sum_probs=31.6

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCcccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEK  289 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  289 (294)
                      |+++|. +++|.|++|++.|.+...|..|+++|.++++|.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            455665 7788888888888888888888888888888776

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=2.2e-10  Score=65.90  Aligned_cols=41  Identities=20%  Similarity=0.349  Sum_probs=30.5

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|+|.+|++.|.....|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            556665 67777777777777777777777777777777774

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=1.9e-10  Score=66.14  Aligned_cols=41  Identities=15%  Similarity=0.314  Sum_probs=24.1

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|.|.+|++.|.....|..|+++|+++++|+|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTT
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            444554 55666666666666666666666666666666553

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=2.6e-10  Score=65.57  Aligned_cols=25  Identities=28%  Similarity=0.781  Sum_probs=9.8

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhC
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQ  228 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~  228 (294)
                      +|.|++|++.|.....|..|+++|.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2em8_A           12 PYKCVECGKGYKRRLDLDFHQRVHT   36 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CeECcccCchhCCHHHHHHHHHHHc
Confidence            3333333333333333333333333

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=2.1e-10  Score=65.91  Aligned_cols=41  Identities=15%  Similarity=0.346  Sum_probs=29.3

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|.|++|++.|.+...|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            555664 66777777777777777777777777777777764

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=7.6e-10  Score=63.54  Aligned_cols=42  Identities=26%  Similarity=0.349  Sum_probs=36.3

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            566777766 999999999999999999999996 889999887

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=2.1e-10  Score=65.90  Aligned_cols=42  Identities=12%  Similarity=0.245  Sum_probs=31.5

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCcccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKVG  291 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  291 (294)
                      |+++|. +++|.|++|++.|.+...|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            556665 677888888888888888888888888877777753

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=2.7e-10  Score=65.50  Aligned_cols=41  Identities=15%  Similarity=0.353  Sum_probs=30.8

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|.|.+|++.|.....|..|+++|+++++|+|.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            455664 67788888888888888888888777777777774

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=7.7e-10  Score=63.51  Aligned_cols=42  Identities=21%  Similarity=0.263  Sum_probs=35.4

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||+|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            566777765 999999999999999999998886 788999877

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.89  E-value=7.7e-10  Score=63.51  Aligned_cols=43  Identities=21%  Similarity=0.465  Sum_probs=35.5

Q ss_pred             hHHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccc
Q psy6546         195 QHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKEC  237 (294)
Q Consensus       195 ~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C  237 (294)
                      +|+++|.+ ++|.|++|++.|...+.|..|+++|.+++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            35667766 48999999999999999999999988876 888876

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=2.9e-10  Score=65.35  Aligned_cols=41  Identities=24%  Similarity=0.359  Sum_probs=21.8

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-cccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCEL  263 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~  263 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            334444443 555555555555555555555554 55555554

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=2.3e-10  Score=65.79  Aligned_cols=41  Identities=22%  Similarity=0.502  Sum_probs=30.7

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|.|.+|++.|.....|..|+++|.++++|+|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            556665 67777777777777777777777777777777774

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=2.9e-10  Score=65.34  Aligned_cols=41  Identities=20%  Similarity=0.438  Sum_probs=30.4

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|.|++|++.|.+...|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            556664 67777777777777777777777777777777775

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=2.2e-10  Score=65.18  Aligned_cols=40  Identities=18%  Similarity=0.314  Sum_probs=31.4

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCcccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEK  289 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  289 (294)
                      |+++|. +++|.|++|++.|.....|..|+++|+++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            566675 7788888888888888888888888888888776

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=2.9e-10  Score=65.34  Aligned_cols=41  Identities=12%  Similarity=0.291  Sum_probs=30.5

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|.|.+|++.|.....|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            556665 67777777777777777777777777777777775

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=2.6e-10  Score=65.54  Aligned_cols=41  Identities=17%  Similarity=0.460  Sum_probs=30.3

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|.|.+|++.|.....|..|+++|.++++|+|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            556665 67777777777777777777777777777777775

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=2.1e-10  Score=65.96  Aligned_cols=41  Identities=20%  Similarity=0.281  Sum_probs=27.8

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|+|.+|++.|.....|..|+++|.++++|+|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            455564 66777777777777777777777777777777664

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=2.3e-10  Score=65.05  Aligned_cols=40  Identities=18%  Similarity=0.318  Sum_probs=32.3

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCcccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEK  289 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  289 (294)
                      |+++|. +++|.|++|++.|.....|..|+++|+++++|+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            566775 7788888888888888888888888888888877

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=2.1e-10  Score=65.25  Aligned_cols=40  Identities=15%  Similarity=0.290  Sum_probs=30.4

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCcccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEK  289 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  289 (294)
                      |+++|. +++|.|++|++.|.+...|..|+++|+++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            556665 6778888888888888888888777777777776

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=9.6e-10  Score=62.43  Aligned_cols=42  Identities=21%  Similarity=0.211  Sum_probs=35.3

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. +++|.|++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            445677765 999999999999999999999996 889999887

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=2.8e-10  Score=65.41  Aligned_cols=43  Identities=26%  Similarity=0.318  Sum_probs=38.8

Q ss_pred             HHHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         222 MHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       222 ~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      +|+++|.+++ |.|..|++.|.....|..|+++|. ++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3667788776 999999999999999999999996 899999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1e-09  Score=62.97  Aligned_cols=43  Identities=23%  Similarity=0.289  Sum_probs=36.6

Q ss_pred             HHHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         222 MHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       222 ~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      +|+++|.+++ |.|..|++.|.....|..|+++|. ++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3667777766 999999999999999999999996 889999876

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=7.8e-10  Score=63.48  Aligned_cols=43  Identities=28%  Similarity=0.470  Sum_probs=34.4

Q ss_pred             hHHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccc
Q psy6546         195 QHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKEC  237 (294)
Q Consensus       195 ~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C  237 (294)
                      +|+++|.+ ++|.|++|++.|...+.|..|+++|.+++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            35667766 48888888888888888888888888766 888876

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=8.9e-10  Score=63.24  Aligned_cols=42  Identities=24%  Similarity=0.355  Sum_probs=36.3

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||+|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            566777766 999999999999999999999996 889999887

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1.8e-10  Score=64.83  Aligned_cols=40  Identities=20%  Similarity=0.392  Sum_probs=30.9

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCcccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEK  289 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  289 (294)
                      |+++|. ++||.|++|++.|.+...|..|+++|.++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            455665 7788888888888888888888888888887765

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=7e-10  Score=63.69  Aligned_cols=43  Identities=21%  Similarity=0.526  Sum_probs=35.7

Q ss_pred             hHHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccc
Q psy6546         195 QHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKEC  237 (294)
Q Consensus       195 ~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C  237 (294)
                      +|+++|.+ ++|.|++|++.|...+.|..|+++|.+++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            35667766 48999999999999999999999988876 888877

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=2.6e-10  Score=65.54  Aligned_cols=41  Identities=20%  Similarity=0.391  Sum_probs=30.1

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|.|++|++.|.....|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            555664 67777777777777777777777777777777764

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=3.1e-10  Score=65.24  Aligned_cols=42  Identities=21%  Similarity=0.347  Sum_probs=38.3

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            567788766 999999999999999999999996 899999987

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1.9e-10  Score=66.08  Aligned_cols=41  Identities=12%  Similarity=0.236  Sum_probs=28.7

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|.|++|++.|.+...|..|+++|+++++|+|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            555664 66777777777777777777777777777777664

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.88  E-value=2.9e-10  Score=65.32  Aligned_cols=43  Identities=26%  Similarity=0.281  Sum_probs=38.9

Q ss_pred             HHHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         222 MHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       222 ~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      +|+++|.+++ |.|..|++.|.....|..|+++|. ++||+|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3667788776 999999999999999999999996 899999987

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1.3e-10  Score=66.83  Aligned_cols=42  Identities=12%  Similarity=0.197  Sum_probs=31.7

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCcccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKVG  291 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  291 (294)
                      |+++|. ++||.|.+|++.|.....|..|+++|+++++|+|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCSC
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            556664 677888888888888888888887777777777754

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=3.5e-10  Score=65.00  Aligned_cols=42  Identities=17%  Similarity=0.339  Sum_probs=38.5

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCcccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKVG  291 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  291 (294)
                      |+++|. +++|.|.+|++.|.+...|..|+++|+++++|+|.-
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS   45 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            567786 899999999999999999999999999999999853

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=7.4e-10  Score=63.58  Aligned_cols=43  Identities=21%  Similarity=0.398  Sum_probs=36.5

Q ss_pred             hHHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccc
Q psy6546         195 QHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKEC  237 (294)
Q Consensus       195 ~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C  237 (294)
                      .|+++|.+ ++|.|++|++.|...+.|..|+++|.+++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            36677776 48999999999999999999999998876 999887

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=3.8e-10  Score=65.14  Aligned_cols=21  Identities=33%  Similarity=0.585  Sum_probs=8.4

Q ss_pred             cccccccccccCHHHHHHHHh
Q psy6546         232 HTCKECSKEFSNEYNLKNHMV  252 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~  252 (294)
                      |.|..|++.|.....|..|++
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~   33 (47)
T 2epx_A           13 YECIECGKAFIQNTSLIRHWR   33 (47)
T ss_dssp             BCCSSSCCCBSSHHHHHHHHT
T ss_pred             EECCccCchhCChHHHHHHhH
Confidence            334444444444444444433

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.88  E-value=3.3e-10  Score=65.10  Aligned_cols=43  Identities=14%  Similarity=0.373  Sum_probs=39.3

Q ss_pred             HHHhhhc-ccccccccccccccchhhhhhhhhhccCcccccccc
Q psy6546         249 NHMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKVG  291 (294)
Q Consensus       249 ~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  291 (294)
                      .|+++|. +++|.|++|++.|.....|..|+++|+++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            3677886 899999999999999999999999999999999864

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=2e-10  Score=65.99  Aligned_cols=41  Identities=17%  Similarity=0.417  Sum_probs=27.4

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|.|.+|++.|.....|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455564 66677777777777777777777777777766664

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=9.1e-10  Score=63.20  Aligned_cols=43  Identities=21%  Similarity=0.384  Sum_probs=35.0

Q ss_pred             hHHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccc
Q psy6546         195 QHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKEC  237 (294)
Q Consensus       195 ~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C  237 (294)
                      .|+++|.+ ++|.|++|++.|...+.|..|+++|++++ |.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            35666766 48999999999999999999998888876 888876

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.88  E-value=2.3e-10  Score=65.76  Aligned_cols=41  Identities=12%  Similarity=0.318  Sum_probs=26.7

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|.|.+|++.|.....|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455554 56666666666666666666666666666666664

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.88  E-value=2.8e-10  Score=65.39  Aligned_cols=42  Identities=17%  Similarity=0.328  Sum_probs=38.7

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCcccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKVG  291 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  291 (294)
                      |+++|. +++|.|++|++.|.+...|..|+++|+++++|+|.-
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            677886 899999999999999999999999999999999863

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=3.4e-10  Score=65.04  Aligned_cols=42  Identities=14%  Similarity=0.213  Sum_probs=38.6

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCcccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKVG  291 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  291 (294)
                      |+++|. +++|.|++|++.|.+...|..|+++|+++++|.|.-
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS   45 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCC
Confidence            667886 899999999999999999999999999999999863

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=2.5e-10  Score=65.65  Aligned_cols=41  Identities=15%  Similarity=0.360  Sum_probs=30.2

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|.|.+|++.|.....|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            556664 67777777777777777777777777777777764

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1e-09  Score=63.00  Aligned_cols=42  Identities=24%  Similarity=0.343  Sum_probs=36.1

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            566777765 999999999999999999999996 889999887

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=3.3e-10  Score=65.11  Aligned_cols=43  Identities=21%  Similarity=0.343  Sum_probs=39.2

Q ss_pred             HHHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         222 MHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       222 ~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      +|+++|.+++ |.|..|++.|.....|..|+++|. ++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3677888876 999999999999999999999996 899999987

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=3e-10  Score=65.25  Aligned_cols=41  Identities=12%  Similarity=0.290  Sum_probs=30.1

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|.|.+|++.|.....|..|+++|+++++|+|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            556664 67777777777777777777777777777777764

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=6.9e-10  Score=63.73  Aligned_cols=43  Identities=19%  Similarity=0.368  Sum_probs=35.5

Q ss_pred             hHHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccc
Q psy6546         195 QHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKEC  237 (294)
Q Consensus       195 ~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C  237 (294)
                      +|+++|.+ ++|.|++|++.|...+.|..|+++|.+++ |.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            35667766 48999999999999999999998888876 888877

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=7.1e-10  Score=63.67  Aligned_cols=42  Identities=21%  Similarity=0.453  Sum_probs=34.8

Q ss_pred             HHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccc
Q psy6546         196 HQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKEC  237 (294)
Q Consensus       196 H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C  237 (294)
                      |+++|.+ ++|.|++|++.|...+.|..|+++|.+++ |.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            5667766 48999999999999999999998888766 888877

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=8e-10  Score=63.44  Aligned_cols=43  Identities=23%  Similarity=0.457  Sum_probs=36.5

Q ss_pred             hHHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccc
Q psy6546         195 QHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKEC  237 (294)
Q Consensus       195 ~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C  237 (294)
                      +|+++|.+ ++|.|.+|++.|...+.|..|+++|.+++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            36667776 48999999999999999999999998876 999887

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=9.9e-10  Score=63.04  Aligned_cols=34  Identities=29%  Similarity=0.678  Sum_probs=16.4

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCCc-cccccc
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKEC  237 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C  237 (294)
                      +|.|++|++.|...+.|..|+++|.+++ |.|.+|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A           12 PYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4555555555555555555554444433 444443

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.87  E-value=1.7e-09  Score=64.37  Aligned_cols=41  Identities=37%  Similarity=0.682  Sum_probs=35.2

Q ss_pred             CceeCCCCccccCCHHHHHHHHH-HhCCCc-cccccccccccC
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLK-LHQGVR-HTCKECSKEFSN  243 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~-~~C~~C~~~f~~  243 (294)
                      ++|.|++|++.|.....|..|++ +|.+++ |.|.+|++.|.+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A           11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            48999999999999999999987 787766 999999998875

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=3.2e-10  Score=65.17  Aligned_cols=42  Identities=21%  Similarity=0.334  Sum_probs=38.3

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            566788766 999999999999999999999997 899999987

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=2.8e-10  Score=65.40  Aligned_cols=42  Identities=12%  Similarity=0.296  Sum_probs=32.3

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCcccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKVG  291 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  291 (294)
                      |+++|. +++|.|++|++.|.....|..|+++|+++++|.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            566675 778888888888888888888888888888887753

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=4.5e-10  Score=64.51  Aligned_cols=30  Identities=20%  Similarity=0.530  Sum_probs=11.1

Q ss_pred             ccccccccccccchhhhhhhhhhccCcccc
Q psy6546         258 AYVCELCARQFTRVDHFNHHRRLQHDPEEF  287 (294)
Q Consensus       258 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~  287 (294)
                      +|.|.+|++.|.....|..|+++|.++++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2em2_A           12 PFKCKECGKAFRQNIHLASHLRIHTGEKPS   41 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHHCCCCSS
T ss_pred             CEECCcCCchhCCHHHHHHHHHHhCCCCCC
Confidence            333333333333333333333333333333

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=4e-10  Score=64.73  Aligned_cols=41  Identities=15%  Similarity=0.396  Sum_probs=31.9

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|.|.+|++.|.....|..|+++|+++++|+|.
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            445665 77888888888888888888888888888888775

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=3.7e-10  Score=64.87  Aligned_cols=42  Identities=14%  Similarity=0.245  Sum_probs=38.5

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCcccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKVG  291 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  291 (294)
                      |+++|. +++|.|++|++.|.+...|..|+++|+++++|.|.-
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            667786 899999999999999999999999999999999853

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=9.7e-10  Score=63.07  Aligned_cols=43  Identities=23%  Similarity=0.414  Sum_probs=35.4

Q ss_pred             hHHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccc
Q psy6546         195 QHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKEC  237 (294)
Q Consensus       195 ~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C  237 (294)
                      .|+++|.+ ++|.|++|++.|...+.|..|+++|.+++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            35667766 48999999999999999999998888776 888877

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=3.8e-10  Score=64.84  Aligned_cols=43  Identities=19%  Similarity=0.304  Sum_probs=38.7

Q ss_pred             HHHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         222 MHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       222 ~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      +|+++|.+++ |.|..|++.|.....|..|+++|. ++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3667788776 999999999999999999999996 899999987

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=3.8e-10  Score=64.14  Aligned_cols=40  Identities=15%  Similarity=0.277  Sum_probs=31.4

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCcccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEK  289 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  289 (294)
                      |+++|. +++|.|++|++.|.....|..|+++|.++++|+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            566675 6788888888888888888888888888888776

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=8.5e-10  Score=63.32  Aligned_cols=43  Identities=28%  Similarity=0.424  Sum_probs=36.5

Q ss_pred             hHHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccc
Q psy6546         195 QHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKEC  237 (294)
Q Consensus       195 ~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C  237 (294)
                      .|+++|.+ ++|.|++|++.|...+.|..|+++|.+++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            46677776 48999999999999999999999998776 999877

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=3.9e-10  Score=64.78  Aligned_cols=43  Identities=14%  Similarity=0.380  Sum_probs=39.1

Q ss_pred             HHHhhhc-ccccccccccccccchhhhhhhhhhccCcccccccc
Q psy6546         249 NHMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKVG  291 (294)
Q Consensus       249 ~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  291 (294)
                      .|+++|. +++|.|++|++.|.....|..|+++|+++++|+|.-
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            3677886 899999999999999999999999999999999853

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=4.1e-10  Score=64.04  Aligned_cols=41  Identities=15%  Similarity=0.192  Sum_probs=33.3

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|.|++|++.|...+.|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            566775 77888888888888888888888888888888763

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=2.9e-10  Score=65.36  Aligned_cols=41  Identities=17%  Similarity=0.369  Sum_probs=25.9

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|.|.+|++.|.....|..|+++|+++++|+|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            445554 56666666666666666666666666666666653

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.85  E-value=4.4e-10  Score=64.57  Aligned_cols=42  Identities=24%  Similarity=0.269  Sum_probs=38.4

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            667788776 999999999999999999999997 899999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1e-09  Score=62.96  Aligned_cols=43  Identities=26%  Similarity=0.473  Sum_probs=36.2

Q ss_pred             hHHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccc
Q psy6546         195 QHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKEC  237 (294)
Q Consensus       195 ~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C  237 (294)
                      +|+++|.+ ++|.|++|++.|...+.|..|+++|.+++ |.|..|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            35667776 48999999999999999999999998876 999877

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=3.8e-10  Score=64.83  Aligned_cols=41  Identities=15%  Similarity=0.326  Sum_probs=26.4

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|.|.+|++.|.....|..|+++|.++++|.|.
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            445554 56666666666666666666666666666666664

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=8.1e-10  Score=63.41  Aligned_cols=42  Identities=24%  Similarity=0.516  Sum_probs=33.3

Q ss_pred             HHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccc
Q psy6546         196 HQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKEC  237 (294)
Q Consensus       196 H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C  237 (294)
                      |+++|.+ ++|.|++|++.|..++.|..|+++|.+++ |.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5566665 48888888888888888888888888766 888876

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1e-09  Score=62.98  Aligned_cols=34  Identities=24%  Similarity=0.418  Sum_probs=16.6

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCCc-cccccc
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKEC  237 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C  237 (294)
                      +|.|++|++.|...+.|..|+++|.+++ |.|..|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A           12 PCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4555555555555555555555444433 444443

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=1.5e-09  Score=62.28  Aligned_cols=42  Identities=24%  Similarity=0.280  Sum_probs=35.8

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||+|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            556777765 999999999999999999999996 889999887

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=4.1e-10  Score=64.67  Aligned_cols=41  Identities=12%  Similarity=0.300  Sum_probs=34.0

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccC-ccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHD-PEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~-~~~~~~~  290 (294)
                      |+++|. ++||.|.+|++.|.....|..|+++|.+ +++|+|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            566775 7888888888888888888888888888 8888874

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=2.9e-10  Score=65.31  Aligned_cols=42  Identities=21%  Similarity=0.298  Sum_probs=38.3

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            667788776 999999999999999999999996 899999987

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=4e-10  Score=64.75  Aligned_cols=42  Identities=21%  Similarity=0.373  Sum_probs=38.2

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||+|++|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            566787766 999999999999999999999997 899999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=1.8e-09  Score=61.89  Aligned_cols=42  Identities=19%  Similarity=0.233  Sum_probs=35.1

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||+|++|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            456677665 999999999999999999998886 888999877

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=4.4e-10  Score=64.58  Aligned_cols=42  Identities=24%  Similarity=0.405  Sum_probs=37.8

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            566787776 999999999999999999999996 899999875

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=2.9e-10  Score=65.33  Aligned_cols=41  Identities=22%  Similarity=0.378  Sum_probs=24.9

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      |+++|. +++|.|.+|++.|.+...|..|+++|.++++|+|.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            445554 55666666666666666666666666666666654

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=1.1e-09  Score=62.86  Aligned_cols=40  Identities=28%  Similarity=0.384  Sum_probs=19.3

Q ss_pred             HHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         225 KLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       225 ~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      ++|.+++ |.|..|++.|.....|..|+++|. ++||+|+.|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            5 SSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3344333 555555555555555555555553 445555444

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=5e-10  Score=63.63  Aligned_cols=40  Identities=13%  Similarity=0.177  Sum_probs=28.1

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccCcccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEK  289 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  289 (294)
                      |+++|. +++|.|.+|++.|.....|..|+++|.++++|+|
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            345554 6677777777777777777777777777777766

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.82  E-value=1.6e-09  Score=62.17  Aligned_cols=42  Identities=26%  Similarity=0.456  Sum_probs=34.5

Q ss_pred             HHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccc
Q psy6546         196 HQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKEC  237 (294)
Q Consensus       196 H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C  237 (294)
                      |+++|.+ ++|.|++|++.|.....|..|+++|.+++ |.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4566665 48999999999999999999998888876 888876

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.5e-09  Score=62.29  Aligned_cols=42  Identities=19%  Similarity=0.263  Sum_probs=35.8

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. +++|+|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            455677766 999999999999999999999996 889999887

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.81  E-value=2.1e-09  Score=62.31  Aligned_cols=35  Identities=26%  Similarity=0.554  Sum_probs=20.2

Q ss_pred             cccccccccccCHHHHHHHHhhhc-ccccccccccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCAR  266 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~  266 (294)
                      |.|..|++.|.....|..|+++|. ++||.|.+|++
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A           13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             eeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            555555555555555555555554 55566655553

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.5e-09  Score=62.31  Aligned_cols=42  Identities=26%  Similarity=0.494  Sum_probs=33.9

Q ss_pred             HHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccc
Q psy6546         196 HQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKEC  237 (294)
Q Consensus       196 H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C  237 (294)
                      |+++|.+ ++|.|++|++.|...+.|..|+++|.+++ |.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4556665 48889889999998888999988888766 888876

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.4e-09  Score=62.33  Aligned_cols=38  Identities=29%  Similarity=0.531  Sum_probs=21.2

Q ss_pred             hCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccc
Q psy6546         227 HQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELC  264 (294)
Q Consensus       227 h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C  264 (294)
                      |.+++ |.|..|++.|.....|..|+++|. ++||.|++|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            7 GEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44433 556666666666666666655554 555666554

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=9.3e-10  Score=63.46  Aligned_cols=42  Identities=14%  Similarity=0.242  Sum_probs=38.5

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhh-hccCcccccccc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRR-LQHDPEEFEKVG  291 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~-~~h~~~~~~~~~  291 (294)
                      |+++|. +++|.|++|++.|.....|..|++ +|.++++|+|.-
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~   46 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS   46 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCC
Confidence            677886 899999999999999999999999 999999999863

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.79  E-value=3e-09  Score=60.66  Aligned_cols=34  Identities=38%  Similarity=0.794  Sum_probs=15.1

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCCc-cccccc
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKEC  237 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C  237 (294)
                      +|.|++|++.|..++.|..|+++|++++ |.|+.|
T Consensus        10 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~c   44 (45)
T 2epq_A           10 PYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSS   44 (45)
T ss_dssp             SSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCC
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCC
Confidence            4444444444444444444444444433 444444

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=1.2e-09  Score=62.65  Aligned_cols=31  Identities=29%  Similarity=0.588  Sum_probs=15.3

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCCc-ccc
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTC  234 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C  234 (294)
                      +|.|.+|++.|...+.|..|+++|.+++ |.|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em4_A           12 PYECIECGKAFKTKSSLICHRRSHTGEKPSGP   43 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHHSSSSCCCC
T ss_pred             CcCCCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            4555555555555555555555544433 444

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.78  E-value=1.3e-09  Score=61.14  Aligned_cols=36  Identities=25%  Similarity=0.376  Sum_probs=18.4

Q ss_pred             HhCCCc-cccccccccccCHHHHHHHHhhhc-cccccc
Q psy6546         226 LHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVC  261 (294)
Q Consensus       226 ~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C  261 (294)
                      +|.+++ |.|..|++.|.....|..|+++|. +++|.|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             SSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            344433 555555555555555555555553 455555

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.78  E-value=9.2e-10  Score=65.59  Aligned_cols=45  Identities=18%  Similarity=0.274  Sum_probs=22.4

Q ss_pred             ccCCchHHHhHHhhcCCC-ceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         186 TFSCMPYLRQHQKLHSGI-TYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       186 ~f~~~~~l~~H~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      .|.....|..|++.|.+. +|.|.+|++.|...+.|..|+++|+++
T Consensus         5 ~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~   50 (54)
T 1yui_A            5 RAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFA   50 (54)
T ss_dssp             CCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTT
T ss_pred             ccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            344444445555555442 555555555555555555555555443

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=1.9e-09  Score=60.16  Aligned_cols=37  Identities=19%  Similarity=0.432  Sum_probs=30.0

Q ss_pred             hhc-ccccccccccccccchhhhhhhhhhccCcccccc
Q psy6546         253 LHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEK  289 (294)
Q Consensus       253 ~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  289 (294)
                      +|. +++|.|++|++.|.....|..|+++|+++++|.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            454 6788888888888888888888888888888876

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=1.2e-09  Score=62.73  Aligned_cols=23  Identities=30%  Similarity=0.580  Sum_probs=8.7

Q ss_pred             cccccccccccCHHHHHHHHhhh
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLH  254 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h  254 (294)
                      |.|..|++.|.....|..|+++|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ep0_A           13 YKCDVCHKSFRYGSSLTVHQRIH   35 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHTTT
T ss_pred             eeCcccCcccCChHHHHHHHHHh
Confidence            33333333333333333333333

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.78  E-value=1.3e-09  Score=62.54  Aligned_cols=39  Identities=23%  Similarity=0.528  Sum_probs=18.5

Q ss_pred             HhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-cccc
Q psy6546         197 QKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCK  235 (294)
Q Consensus       197 ~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~  235 (294)
                      +++|.+ ++|.|++|++.|.....|..|+++|.+++ |.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            4 GSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            334443 24555555555555555555555554433 4443

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.4e-09  Score=62.39  Aligned_cols=40  Identities=23%  Similarity=0.345  Sum_probs=23.1

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            344455444 666666666666666666666664 5566664

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.5e-09  Score=62.25  Aligned_cols=40  Identities=25%  Similarity=0.361  Sum_probs=25.8

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            444555544 667777777777777777766665 6667665

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.5e-09  Score=62.26  Aligned_cols=39  Identities=26%  Similarity=0.358  Sum_probs=20.8

Q ss_pred             HHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         224 LKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       224 ~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      +++|.+++ |.|..|++.|.....|..|+++|. ++||+|+
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            4 GSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            34444433 555555555555555555555554 5555554

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1.7e-09  Score=62.00  Aligned_cols=40  Identities=20%  Similarity=0.314  Sum_probs=23.8

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            344455444 666666666666666666666664 5666664

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1.5e-09  Score=62.19  Aligned_cols=40  Identities=23%  Similarity=0.403  Sum_probs=21.2

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            334444433 555555555555555555555553 5555554

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1.4e-09  Score=62.43  Aligned_cols=39  Identities=26%  Similarity=0.363  Sum_probs=21.2

Q ss_pred             HHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         224 LKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       224 ~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      +++|.+++ |.|..|++.|.....|..|+++|. ++||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            4 GSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             ccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            34444443 555555555555555555555554 5555554

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1.5e-09  Score=62.22  Aligned_cols=40  Identities=28%  Similarity=0.365  Sum_probs=22.3

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            334444443 566666666666666666666654 5566654

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1.9e-09  Score=61.78  Aligned_cols=38  Identities=24%  Similarity=0.437  Sum_probs=19.9

Q ss_pred             HHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         225 KLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       225 ~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      ++|.+++ |.|..|++.|.....|..|+++|. ++||.|+
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            5 SSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            3444433 555555555555555555555553 4555554

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1.5e-09  Score=62.19  Aligned_cols=32  Identities=25%  Similarity=0.611  Sum_probs=16.0

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCCc-cccc
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCK  235 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~  235 (294)
                      +|.|++|++.|...+.|..|+++|.+++ |.|.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A           12 PYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             CeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            4555555555555555555555554433 4443

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1.6e-09  Score=62.17  Aligned_cols=39  Identities=31%  Similarity=0.547  Sum_probs=18.8

Q ss_pred             HhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-cccc
Q psy6546         197 QKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCK  235 (294)
Q Consensus       197 ~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~  235 (294)
                      +++|.+ ++|.|.+|++.|...+.|..|+++|.+++ |.|.
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            4 GSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            334433 25555555555555555555555554443 4443

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1.5e-09  Score=62.20  Aligned_cols=40  Identities=23%  Similarity=0.355  Sum_probs=24.0

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            344455444 666666666666666666666664 5666664

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1.9e-09  Score=61.80  Aligned_cols=40  Identities=23%  Similarity=0.418  Sum_probs=25.0

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            444555544 666666666666666666666664 5666665

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1.8e-09  Score=61.96  Aligned_cols=40  Identities=25%  Similarity=0.370  Sum_probs=23.8

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            344455544 666666666666666666666664 5666664

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=1.9e-09  Score=61.86  Aligned_cols=38  Identities=29%  Similarity=0.412  Sum_probs=18.7

Q ss_pred             HHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         225 KLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       225 ~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      ++|.+++ |.|..|++.|.....|..|+++|. +++|+|+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            5 SSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3344433 555555555555555555555553 4455553

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=1.6e-09  Score=62.11  Aligned_cols=40  Identities=23%  Similarity=0.363  Sum_probs=22.9

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            344454443 666666666666666666666664 5566664

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=1.7e-09  Score=62.05  Aligned_cols=39  Identities=23%  Similarity=0.324  Sum_probs=23.8

Q ss_pred             HHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         224 LKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       224 ~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      +++|.+++ |.|..|++.|.....|..|+++|. ++||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            4 GSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             SSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            34455544 666666666666666666666664 5666665

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.2e-09  Score=60.19  Aligned_cols=31  Identities=29%  Similarity=0.650  Sum_probs=15.3

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCCc-ccc
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTC  234 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C  234 (294)
                      +|.|++|++.|...+.|..|+++|.+++ |.|
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A           10 PYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            4555555555555555555555544433 444

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=1.9e-09  Score=61.86  Aligned_cols=40  Identities=28%  Similarity=0.433  Sum_probs=23.0

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            344454444 666666666666666666666664 5566664

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=1.8e-09  Score=61.88  Aligned_cols=31  Identities=29%  Similarity=0.450  Sum_probs=15.2

Q ss_pred             cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      |.|..|++.|.....|..|+++|. ++||.|+
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A           13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             cCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            445555555555555555544443 4445543

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=1.8e-09  Score=61.90  Aligned_cols=40  Identities=25%  Similarity=0.395  Sum_probs=21.4

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            334444443 555555555555555555555554 5555554

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=2e-09  Score=61.73  Aligned_cols=38  Identities=21%  Similarity=0.350  Sum_probs=17.9

Q ss_pred             HHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         225 KLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       225 ~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      ++|.+++ |.|..|++.|.....|..|+++|. +++|.|+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            5 SSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             ccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3344333 455555555555555555554443 4455543

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=2.4e-09  Score=61.39  Aligned_cols=40  Identities=28%  Similarity=0.453  Sum_probs=25.8

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. +++|.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            444555544 667777777777777777766664 6667665

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=1.6e-09  Score=61.87  Aligned_cols=39  Identities=13%  Similarity=0.345  Sum_probs=28.6

Q ss_pred             hhhc-ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         252 VLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       252 ~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      ++|. +++|.|.+|++.|.....|..|+++|+++++|.|.
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            3454 67777777777777777777777777777777764

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.72  E-value=9.5e-09  Score=58.50  Aligned_cols=40  Identities=18%  Similarity=0.282  Sum_probs=33.0

Q ss_pred             HhCCCc-cccccccccccCHHHHHHHHhhhc-cccccccccc
Q psy6546         226 LHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCA  265 (294)
Q Consensus       226 ~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~  265 (294)
                      .|.+++ |.|..|++.|.....|..|+++|. +++|.|+.||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            355555 899999999999999999998886 8889998886

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=2.5e-09  Score=61.31  Aligned_cols=35  Identities=23%  Similarity=0.453  Sum_probs=22.5

Q ss_pred             ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      +++|+|.+|++.|.+...|..|+++|+++++|+|.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A           10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            55666666666666666666666666666666653

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=2.9e-09  Score=60.36  Aligned_cols=39  Identities=28%  Similarity=0.578  Sum_probs=20.0

Q ss_pred             HHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-ccc
Q psy6546         196 HQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTC  234 (294)
Q Consensus       196 H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C  234 (294)
                      |+++|.+ ++|.|+.|++.|...+.|..|+++|.+++ |.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            3344443 25555555555555555555555555443 444

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=2.7e-09  Score=60.48  Aligned_cols=39  Identities=23%  Similarity=0.334  Sum_probs=20.9

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-cccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVC  261 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C  261 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            334444443 555555555555555555555554 555555

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=2.3e-09  Score=60.83  Aligned_cols=38  Identities=26%  Similarity=0.313  Sum_probs=20.1

Q ss_pred             HHHhCCCc-cccccccccccCHHHHHHHHhhhc-cccccc
Q psy6546         224 LKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVC  261 (294)
Q Consensus       224 ~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C  261 (294)
                      +++|.+++ |.|..|++.|.....|..|+++|. +++|+|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            4 GSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             CCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             ccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            34444443 555555555555555555555554 455555

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.70  E-value=3.8e-09  Score=59.59  Aligned_cols=34  Identities=18%  Similarity=0.374  Sum_probs=21.6

Q ss_pred             ccccccccccccccchhhhhhhhhhccCcccccc
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEK  289 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~  289 (294)
                      +++|.|..|++.|.....|..|+++|+++++|+|
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (43)
T 2yrm_A            8 NGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPS   41 (43)
T ss_dssp             SCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSS
T ss_pred             CCCEECCCCCCeeCChHHHHHHHHhhCCCCCccC
Confidence            5566666666666666666666666666666655

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=3.3e-09  Score=60.13  Aligned_cols=38  Identities=16%  Similarity=0.212  Sum_probs=19.7

Q ss_pred             HHHhCCCc-cccccccccccCHHHHHHHHhhhc-cccccc
Q psy6546         224 LKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVC  261 (294)
Q Consensus       224 ~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C  261 (294)
                      +++|.+++ |.|..|++.|.....|..|+++|. ++||.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            4 GSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             ccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            33444433 555555555555555555555554 455555

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=2.9e-09  Score=60.36  Aligned_cols=39  Identities=15%  Similarity=0.415  Sum_probs=20.1

Q ss_pred             HHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-ccc
Q psy6546         196 HQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTC  234 (294)
Q Consensus       196 H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C  234 (294)
                      |+++|.+ ++|.|++|++.|.....|..|+++|.+++ |.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            3444443 25555555555555555555555555443 444

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=3.4e-09  Score=60.74  Aligned_cols=38  Identities=24%  Similarity=0.395  Sum_probs=23.7

Q ss_pred             HHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         225 KLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       225 ~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      ++|.+++ |.|..|++.|.....|..|+++|. ++||+|+
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            5 SSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3455444 666666666666666666666664 5666664

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=3.2e-09  Score=60.81  Aligned_cols=40  Identities=23%  Similarity=0.370  Sum_probs=23.6

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            344455444 666666666666666666666664 5566664

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=3.4e-09  Score=59.40  Aligned_cols=36  Identities=22%  Similarity=0.422  Sum_probs=19.5

Q ss_pred             HhCCCc-cccccccccccCHHHHHHHHhhhc-cccccc
Q psy6546         226 LHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVC  261 (294)
Q Consensus       226 ~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C  261 (294)
                      +|.+++ |.|..|++.|.....|..|+++|. ++||+|
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            5 SSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             ccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            344433 555555555555555555555554 555554

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.67  E-value=4e-09  Score=59.11  Aligned_cols=31  Identities=23%  Similarity=0.495  Sum_probs=16.9

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCCc-ccc
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTC  234 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C  234 (294)
                      +|.|++|++.|...+.|..|+++|.+++ |.|
T Consensus        11 ~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A           11 PYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            5555555555555555555555555443 443

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=1e-08  Score=58.63  Aligned_cols=31  Identities=35%  Similarity=0.746  Sum_probs=16.0

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCCc-ccc
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTC  234 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C  234 (294)
                      +|.|++|++.|...+.|..|+++|.+++ |.|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yto_A           12 PYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP   43 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHTCCCBTTT
T ss_pred             CEECcccCCccCCHhHHHHHHHHcCCCCCCCC
Confidence            5555555555555555555555554443 444

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=3.1e-09  Score=59.59  Aligned_cols=30  Identities=20%  Similarity=0.492  Sum_probs=15.2

Q ss_pred             cccccccccccCHHHHHHHHhhhc-cccccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAYVC  261 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C  261 (294)
                      |.|..|++.|.....|..|+++|. ++||.|
T Consensus        12 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A           12 YKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             EECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             EeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            555555555555555555555553 445544

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=5.2e-09  Score=59.29  Aligned_cols=30  Identities=30%  Similarity=0.490  Sum_probs=14.8

Q ss_pred             cccccccccccCHHHHHHHHhhhc-cccccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAYVC  261 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C  261 (294)
                      |.|..|++.|.....|..|+++|. ++||+|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A           13 SECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             CCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             eECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            445555555555555555554443 444544

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=3e-09  Score=59.60  Aligned_cols=39  Identities=23%  Similarity=0.365  Sum_probs=22.7

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-cccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVC  261 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C  261 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            334455444 666666666666666666666664 556655

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=2e-09  Score=68.74  Aligned_cols=63  Identities=24%  Similarity=0.364  Sum_probs=45.1

Q ss_pred             HHHHHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhhhhhhccCcc
Q psy6546         220 YRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPE  285 (294)
Q Consensus       220 l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  285 (294)
                      |..|++++.+++ +.|..|++.|. ...|..|+ .|. ++||.|+.|++.|. ...|..|++++.+++
T Consensus         5 L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            5 SSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTBS
T ss_pred             HHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCCc
Confidence            445555555555 77888877774 77788887 664 77888888888766 477888887777654

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.66  E-value=1.5e-08  Score=58.52  Aligned_cols=42  Identities=26%  Similarity=0.401  Sum_probs=35.9

Q ss_pred             CCCCCCCccCccchhccCCHHHHHHHHHHhCCc-ccCCccCcc
Q psy6546          26 SSTTPTRHPCPQCSRDFATVKILKTHLKTHEGI-IYPCPECDK   67 (294)
Q Consensus        26 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~-~~~c~~c~~   67 (294)
                      .....++|.|+.|++.|.....|..|+++|.+. +|.|+.|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            445567899999999999999999999998765 788888764

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=3.7e-09  Score=60.57  Aligned_cols=40  Identities=25%  Similarity=0.351  Sum_probs=23.2

Q ss_pred             HHHHhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         223 HLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       223 H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      |+++|.+++ |.|..|++.|.....|..|+++|. ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            344455444 666666666666666666666664 5566664

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.65  E-value=1.1e-09  Score=67.29  Aligned_cols=52  Identities=15%  Similarity=0.431  Sum_probs=39.7

Q ss_pred             HhHHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHH
Q psy6546         194 RQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLK  248 (294)
Q Consensus       194 ~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~  248 (294)
                      ..|+++|.+ +||.|+.|++.|.....|.   ++|.+++ |.|..|++.|....++.
T Consensus         3 ~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            3 ETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             hhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcccc
Confidence            456677776 4889999999998887776   6787766 89999998888765543

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=7.3e-09  Score=59.88  Aligned_cols=24  Identities=29%  Similarity=0.601  Sum_probs=8.7

Q ss_pred             ccccccchhhhhhhhhhccCcccc
Q psy6546         264 CARQFTRVDHFNHHRRLQHDPEEF  287 (294)
Q Consensus       264 C~~~f~~~~~l~~H~~~~h~~~~~  287 (294)
                      |++.|.....|..|+++|.++++|
T Consensus        20 C~k~f~~~~~L~~H~~~H~~~k~~   43 (48)
T 2ent_A           20 CGWRFSRSDELSRHRRSHSGVKPS   43 (48)
T ss_dssp             CCCEESSHHHHHHHHTTSCCCCSC
T ss_pred             CCCccCCHHHHHHHHHHhCCCCCC
Confidence            333333333333333333333333

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=1.4e-08  Score=58.15  Aligned_cols=31  Identities=26%  Similarity=0.469  Sum_probs=17.5

Q ss_pred             cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      |.|..|++.|.....|..|+++|. ++||+|+
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A           13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             cCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            555555555555555555555554 5555554

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.60  E-value=2.2e-08  Score=56.36  Aligned_cols=31  Identities=29%  Similarity=0.476  Sum_probs=15.4

Q ss_pred             cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      |.|..|++.|.....|..|+++|. ++||.|+
T Consensus        11 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A           11 FFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             BCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             EECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            455555555555555555555553 4455543

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.59  E-value=1.6e-08  Score=55.60  Aligned_cols=35  Identities=20%  Similarity=0.543  Sum_probs=29.2

Q ss_pred             ccccccccccccccchhhhhhhhhhccCccccccc
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKV  290 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~  290 (294)
                      +++|.|.+|++.|...+.|..|+++|.++++|++.
T Consensus         4 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~~   38 (39)
T 1njq_A            4 PRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRL   38 (39)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTTC
T ss_pred             CCceECCCCCcccCCHHHHHHHHHHcCCCccceec
Confidence            67888888888888888888888888888888753

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=1.1e-08  Score=57.94  Aligned_cols=34  Identities=35%  Similarity=0.600  Sum_probs=16.5

Q ss_pred             HhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         197 QKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       197 ~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      +++|.+ ++|.|.+|++.|...+.|..|+++|.++
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~   38 (44)
T 2epv_A            4 GSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGV   38 (44)
T ss_dssp             CCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSC
T ss_pred             CcccCCCcCeECCCCCcccCchHHHHHHHhHhcCC
Confidence            334443 2455555555555555555555555443

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=4.7e-08  Score=55.81  Aligned_cols=41  Identities=20%  Similarity=0.221  Sum_probs=33.4

Q ss_pred             ccCCCCCcccCCccCccccChHHHHHHHhhccCc-ccCCccc
Q psy6546          89 RMSTTLTRHPCPQCSRDFATVKILKTHLKTHEGI-IYPCPEC  129 (294)
Q Consensus        89 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~-~~~C~~C  129 (294)
                      ..+.+.++|.|..|++.|.....|..|++.|.+. +|.|.+|
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4556778888888888888888888888888774 8888876

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=3.5e-08  Score=56.36  Aligned_cols=41  Identities=17%  Similarity=0.191  Sum_probs=33.5

Q ss_pred             ccCCCCCcccCCccCccccChHHHHHHHhhccCc-ccCCccc
Q psy6546          89 RMSTTLTRHPCPQCSRDFATVKILKTHLKTHEGI-IYPCPEC  129 (294)
Q Consensus        89 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~-~~~C~~C  129 (294)
                      +.+.+.++|.|..|++.|.....|..|++.|.+. +|.|.+|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4456778888999999999888898898888764 8888876

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=5.1e-09  Score=59.31  Aligned_cols=31  Identities=29%  Similarity=0.597  Sum_probs=15.5

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCCc-ccc
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTC  234 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C  234 (294)
                      +|.|++|++.|...+.|..|+++|.+++ |.|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A           12 SYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            4555555555555555555555554433 444

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.57  E-value=1.7e-08  Score=53.21  Aligned_cols=32  Identities=28%  Similarity=0.558  Sum_probs=25.1

Q ss_pred             cccccccccccccchhhhhhhhhhccCccccc
Q psy6546         257 RAYVCELCARQFTRVDHFNHHRRLQHDPEEFE  288 (294)
Q Consensus       257 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  288 (294)
                      +||.|.+|++.|.....|..|+++|.++++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            46788888888888888888888888877764

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=1.5e-08  Score=58.01  Aligned_cols=26  Identities=23%  Similarity=0.626  Sum_probs=13.7

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCC
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQG  229 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~  229 (294)
                      +|.|.+|++.|...+.|..|+++|.+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eoy_A           12 CFKCNKCEKTFSCSKYLTQHERIHTR   37 (46)
T ss_dssp             CEECSSSCCEESSSHHHHHHHTTCCS
T ss_pred             CEECcCCCCcCCCHHHHHHHHHHcCC
Confidence            55555555555555555555555544

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=1.1e-08  Score=58.27  Aligned_cols=31  Identities=26%  Similarity=0.491  Sum_probs=17.2

Q ss_pred             cccccccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      |.|..|++.|.....|..|+++|. +++|.|+
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A           13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             ccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            555555555555555555555554 4555554

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.55  E-value=1.1e-08  Score=53.45  Aligned_cols=32  Identities=22%  Similarity=0.496  Sum_probs=29.3

Q ss_pred             cccccccccccccchhhhhhhhhhccCccccc
Q psy6546         257 RAYVCELCARQFTRVDHFNHHRRLQHDPEEFE  288 (294)
Q Consensus       257 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~  288 (294)
                      +||.|..|++.|...+.|..|+++|.++++|.
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   32 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVALG   32 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSCC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCCC
Confidence            58999999999999999999999999998863

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.53  E-value=1.8e-08  Score=54.55  Aligned_cols=34  Identities=26%  Similarity=0.542  Sum_probs=27.2

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhccC
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHD  283 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~  283 (294)
                      |+++|. ++||.|+.|++.|.+...|..|+++|++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            556675 7788888888888888888888888765

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.52  E-value=9e-09  Score=67.81  Aligned_cols=54  Identities=13%  Similarity=0.247  Sum_probs=37.2

Q ss_pred             HhCCCc-cccccccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhhhhhhccC
Q psy6546         226 LHQGVR-HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHD  283 (294)
Q Consensus       226 ~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~  283 (294)
                      +|.+++ |.|..|++.|.....|..|+++|. ++||+|..|    .....|..|+++|.+
T Consensus        19 ~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~----~~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           19 PRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQ----ERRKQLLSKQKYADG   74 (88)
T ss_dssp             SCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCC----SCCCCCCCCCCCCCC
T ss_pred             ccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchh----hhHHHHHhhhccccc
Confidence            455544 777777777777777777777775 677777654    345666677777766

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=1.8e-08  Score=54.59  Aligned_cols=34  Identities=21%  Similarity=0.469  Sum_probs=27.4

Q ss_pred             hhc-ccccccccccccccchhhhhhhhhhccCccc
Q psy6546         253 LHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEE  286 (294)
Q Consensus       253 ~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  286 (294)
                      +|. +++|.|.+|++.|.....|..|+++|+++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            454 7788888888888888888888888887653

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=3.9e-08  Score=54.60  Aligned_cols=30  Identities=27%  Similarity=0.451  Sum_probs=16.6

Q ss_pred             cccccccccccCHHHHHHHHhhhc-cccccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAYVC  261 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C  261 (294)
                      |.|..|++.|.....|..|+++|. ++||+|
T Consensus        11 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A           11 YECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             EECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             eECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            555555555555555555555554 455554

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.49  E-value=3.5e-08  Score=52.58  Aligned_cols=31  Identities=29%  Similarity=0.617  Sum_probs=25.7

Q ss_pred             ccccccccccccccchhhhhhhhhhccCccc
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQHDPEE  286 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  286 (294)
                      +++|.|..|++.|.+...|..|+++|+++++
T Consensus         5 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            5 SSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            6788888888888888888888888887653

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.44  E-value=7.2e-08  Score=58.86  Aligned_cols=35  Identities=20%  Similarity=0.273  Sum_probs=22.2

Q ss_pred             cccccccc--ccccccchhhhhhhh-hhccCccccccc
Q psy6546         256 VRAYVCEL--CARQFTRVDHFNHHR-RLQHDPEEFEKV  290 (294)
Q Consensus       256 ~~~~~C~~--C~~~f~~~~~l~~H~-~~~h~~~~~~~~  290 (294)
                      ++||+|..  |+++|++.++|..|+ ++|.+++||-|.
T Consensus        25 EKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           25 YRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             SCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             CCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            56666643  666666666666665 456666666553

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.44  E-value=6.5e-08  Score=51.53  Aligned_cols=30  Identities=27%  Similarity=0.618  Sum_probs=25.0

Q ss_pred             ccccccccccccccchhhhhhhhhhccCcc
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQHDPE  285 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  285 (294)
                      +++|.|.+|++.|.....|..|+++|++++
T Consensus         5 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            5 KRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            678888888888888888888888887765

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.41  E-value=2.2e-07  Score=53.38  Aligned_cols=42  Identities=19%  Similarity=0.317  Sum_probs=33.5

Q ss_pred             cccCCCCCcccCC--ccCccccChHHHHHHHhhccCc-ccCCccc
Q psy6546          88 SRMSTTLTRHPCP--QCSRDFATVKILKTHLKTHEGI-IYPCPEC  129 (294)
Q Consensus        88 ~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~-~~~C~~C  129 (294)
                      .+.+.++++|.|.  .|++.|.....|..|++.|.+. +|+|.+|
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3456677888887  7888888888888888888774 8888876

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.33  E-value=1.9e-07  Score=59.48  Aligned_cols=65  Identities=20%  Similarity=0.331  Sum_probs=50.4

Q ss_pred             cchhhcccCCCCCcccCCccCccccChHHHHHHHhhccC-cccCCcccccccCChHhHHHHHhhhCCCC
Q psy6546          83 RAVYLSRMSTTLTRHPCPQCSRDFATVKILKTHLKTHEG-IIYPCPECDKTFLSTSGLREHRKVHAGVR  150 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  150 (294)
                      .+..+...+.+.+++.|..|++.|. ...|..|+ .+.+ +++.|..|++.|. ...|..|++.+++.+
T Consensus         4 ~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            4 GSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTBS
T ss_pred             HHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCCc
Confidence            4555666778888899999999984 88888888 5554 5888999988876 488888888877653

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.33  E-value=1.5e-07  Score=50.99  Aligned_cols=29  Identities=10%  Similarity=0.150  Sum_probs=23.5

Q ss_pred             cccccccc--ccccccchhhhhhhhhhccCc
Q psy6546         256 VRAYVCEL--CARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       256 ~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      ++||+|++  |+++|.+++.|..|+++|.+.
T Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            7 GILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            67888875  888888888888888888764

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.32  E-value=5.5e-07  Score=47.16  Aligned_cols=28  Identities=36%  Similarity=0.842  Sum_probs=16.3

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCCc
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGVR  231 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~  231 (294)
                      ||.|++|++.|...+.|..|+++|.+++
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~   29 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLG   29 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCC
Confidence            4556666666666666666666555543

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.31  E-value=1.6e-07  Score=50.31  Aligned_cols=29  Identities=24%  Similarity=0.460  Sum_probs=24.3

Q ss_pred             ccccccccccccccchhhhhhhhhhccCc
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      ++||.|.+|++.|.....|..|+++|.++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            7 GLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            67888888888888888888888888765

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.31  E-value=2e-07  Score=47.13  Aligned_cols=28  Identities=29%  Similarity=0.681  Sum_probs=23.3

Q ss_pred             cccccccccccccchhhhhhhhhhccCc
Q psy6546         257 RAYVCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       257 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      +||.|+.|++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            4788888888888888888888888765

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.31  E-value=2.3e-07  Score=49.97  Aligned_cols=34  Identities=32%  Similarity=0.700  Sum_probs=20.7

Q ss_pred             HHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCC
Q psy6546         196 HQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQG  229 (294)
Q Consensus       196 H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~  229 (294)
                      |+++|.+ +||.|+.|++.|.....|..|+++|.+
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            3444544 366666666666666666666666654

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.30  E-value=2.2e-07  Score=47.31  Aligned_cols=29  Identities=21%  Similarity=0.542  Sum_probs=23.7

Q ss_pred             ccccccccccccccchhhhhhhhhhccCc
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      ++||.|..|++.|.....|..|+++|+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            36788888888888888888888888765

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.30  E-value=1.2e-07  Score=51.15  Aligned_cols=32  Identities=19%  Similarity=0.293  Sum_probs=25.4

Q ss_pred             hhc-ccccccccccccccch-hhhhhhhhhccCc
Q psy6546         253 LHD-VRAYVCELCARQFTRV-DHFNHHRRLQHDP  284 (294)
Q Consensus       253 ~h~-~~~~~C~~C~~~f~~~-~~l~~H~~~~h~~  284 (294)
                      +|. ++||.|+.|++.|... +.|..|+++|.++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            454 6788888888888888 8888888887765

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.29  E-value=1.9e-07  Score=50.00  Aligned_cols=29  Identities=14%  Similarity=0.353  Sum_probs=23.7

Q ss_pred             ccccccccccccccchhhhhhhhhhccCc
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      ++||+|.+|++.|.....|..|+++|+++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            7 GKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             CCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            67888888888888888888888887765

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.29  E-value=2.2e-07  Score=47.29  Aligned_cols=29  Identities=21%  Similarity=0.567  Sum_probs=24.0

Q ss_pred             cccccccccccccchhhhhhhhhhccCcc
Q psy6546         257 RAYVCELCARQFTRVDHFNHHRRLQHDPE  285 (294)
Q Consensus       257 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  285 (294)
                      ++|.|+.|++.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            47888888888888888888888888765

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.28  E-value=2.4e-07  Score=46.74  Aligned_cols=28  Identities=39%  Similarity=0.953  Sum_probs=21.7

Q ss_pred             cccccccccccccchhhhhhhhhhccCc
Q psy6546         257 RAYVCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       257 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      +||.|+.|++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            4678888888888888888888777664

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=2.1e-07  Score=49.81  Aligned_cols=29  Identities=21%  Similarity=0.359  Sum_probs=23.1

Q ss_pred             ccccccccccccccchhhhhhhhhhccCc
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      ++||.|.+|++.|.....|..|+++|+++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            7 GKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            67888888888888888888888877765

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.59  E-value=1.1e-07  Score=48.15  Aligned_cols=28  Identities=21%  Similarity=0.540  Sum_probs=24.0

Q ss_pred             cccccccccccccchhhhhhhhhhccCc
Q psy6546         257 RAYVCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       257 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      +||.|..|++.|...+.|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            4788999999999999999998888765

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.26  E-value=3e-07  Score=46.01  Aligned_cols=28  Identities=25%  Similarity=0.752  Sum_probs=21.9

Q ss_pred             ccccccccccccccchhhhhhhhhhccC
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQHD  283 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~  283 (294)
                      ++||.|+.|++.|.....|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            3678888888888888888888877753

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.26  E-value=2.6e-07  Score=45.90  Aligned_cols=26  Identities=23%  Similarity=0.483  Sum_probs=20.0

Q ss_pred             ccccccccccccccchhhhhhhhhhc
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQ  281 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~  281 (294)
                      ++||.|+.|++.|...+.|..|+++|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhc
Confidence            35778888888888888888887766

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.25  E-value=2.4e-07  Score=50.27  Aligned_cols=32  Identities=25%  Similarity=0.611  Sum_probs=25.2

Q ss_pred             ccccccc--cccccccchhhhhhhhhhccCcccc
Q psy6546         256 VRAYVCE--LCARQFTRVDHFNHHRRLQHDPEEF  287 (294)
Q Consensus       256 ~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~  287 (294)
                      +++|.|.  .|++.|...+.|..|+++|.++++|
T Consensus         4 ~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            5778887  4888888888888888888877766

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.25  E-value=2.4e-07  Score=49.42  Aligned_cols=23  Identities=17%  Similarity=0.519  Sum_probs=15.4

Q ss_pred             ccccccccccccccchhhhhhhh
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHR  278 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~  278 (294)
                      ++||.|+.|+++|++.++|..|+
T Consensus         6 ekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            6 PARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCCEETTTTEECSCHHHHHHHH
T ss_pred             ccCeECCCCCCccCCHhHccCcC
Confidence            56666666666666666666665

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.24  E-value=1.3e-06  Score=47.31  Aligned_cols=28  Identities=36%  Similarity=0.706  Sum_probs=22.9

Q ss_pred             CceeCCC--CccccCCHHHHHHHHHHhCCC
Q psy6546         203 ITYSCPS--CSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       203 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      +||.|++  |++.|..++.|..|+++|+++
T Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            8 ILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            5888875  888888888888888888775

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.24  E-value=3.2e-07  Score=49.05  Aligned_cols=29  Identities=17%  Similarity=0.584  Sum_probs=22.4

Q ss_pred             ccccccccccccccchhhhhhhhhhccCc
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      +++|.|++|++.|.....|..|+++|.++
T Consensus         7 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            7 GKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            66788888888888888888887777765

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.55  E-value=1.4e-07  Score=48.15  Aligned_cols=29  Identities=31%  Similarity=0.707  Sum_probs=25.0

Q ss_pred             ccccccccccccccchhhhhhhhhhccCc
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      ++||.|..|++.|.....|..|+++|+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            36889999999999999999999888765

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.24  E-value=1.9e-07  Score=50.44  Aligned_cols=32  Identities=13%  Similarity=0.243  Sum_probs=24.0

Q ss_pred             hhhc-ccccccccccccccchhhhhhh-hhhccC
Q psy6546         252 VLHD-VRAYVCELCARQFTRVDHFNHH-RRLQHD  283 (294)
Q Consensus       252 ~~h~-~~~~~C~~C~~~f~~~~~l~~H-~~~~h~  283 (294)
                      ++|. ++||+|+.|++.|.....|..| ++.|.+
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            3454 6788888888888888888888 777655

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.23  E-value=7.5e-07  Score=48.61  Aligned_cols=29  Identities=24%  Similarity=0.623  Sum_probs=16.7

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCCc
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGVR  231 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  231 (294)
                      ++|.|.+|++.|...+.|..|+++|.+++
T Consensus         5 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k   33 (39)
T 1njq_A            5 RSYTCSFCKREFRSAQALGGHMNVHRRDR   33 (39)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CceECCCCCcccCCHHHHHHHHHHcCCCc
Confidence            35566666666666666666655555543

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.23  E-value=3.4e-07  Score=48.97  Aligned_cols=29  Identities=21%  Similarity=0.568  Sum_probs=22.9

Q ss_pred             ccccccccccccccchhhhhhhhhhccCc
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      +++|.|++|++.|.....|..|+++|+++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            67788888888888888888888877764

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.23  E-value=3.5e-07  Score=45.37  Aligned_cols=25  Identities=20%  Similarity=0.603  Sum_probs=18.3

Q ss_pred             cccccccccccccchhhhhhhhhhc
Q psy6546         257 RAYVCELCARQFTRVDHFNHHRRLQ  281 (294)
Q Consensus       257 ~~~~C~~C~~~f~~~~~l~~H~~~~  281 (294)
                      +||.|+.|++.|.+.+.|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            5677777777777777777777665

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.22  E-value=3.5e-07  Score=52.66  Aligned_cols=30  Identities=17%  Similarity=0.522  Sum_probs=22.3

Q ss_pred             ccccccccccccccchhhhhhhhh-hccCcc
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRR-LQHDPE  285 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~-~~h~~~  285 (294)
                      +++|.|.+|++.|.+...|..|++ +|.++.
T Consensus         5 ~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            5 DKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             TSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            678888888888888888888887 776654

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.21  E-value=5e-07  Score=44.72  Aligned_cols=26  Identities=31%  Similarity=0.814  Sum_probs=19.6

Q ss_pred             ccccccccccccchhhhhhhhhhccC
Q psy6546         258 AYVCELCARQFTRVDHFNHHRRLQHD  283 (294)
Q Consensus       258 ~~~C~~C~~~f~~~~~l~~H~~~~h~  283 (294)
                      ||.|..|++.|.....|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            57788888888888888888777765

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.21  E-value=5.1e-07  Score=46.42  Aligned_cols=28  Identities=32%  Similarity=0.875  Sum_probs=23.0

Q ss_pred             cccccc--cccccccchhhhhhhhhhccCc
Q psy6546         257 RAYVCE--LCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       257 ~~~~C~--~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      +||.|+  .|++.|...+.|..|+++|.++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            478887  8888888888888888888775

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.21  E-value=3.4e-07  Score=46.10  Aligned_cols=28  Identities=18%  Similarity=0.552  Sum_probs=22.4

Q ss_pred             cccccccccccccchhhhhhhhhhccCc
Q psy6546         257 RAYVCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       257 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      +||.|+.|++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            4788888888888888888888887765

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.20  E-value=6.2e-07  Score=46.45  Aligned_cols=29  Identities=24%  Similarity=0.647  Sum_probs=24.2

Q ss_pred             ccccccc--cccccccchhhhhhhhhhccCc
Q psy6546         256 VRAYVCE--LCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       256 ~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      ++||.|.  .|++.|.....|..|+++|+++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            4688888  7999998888899998888765

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.19  E-value=8.9e-07  Score=47.60  Aligned_cols=28  Identities=36%  Similarity=0.724  Sum_probs=19.0

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      ++|.|..|++.|...+.|..|+++|+++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   35 (37)
T 2elo_A            8 RSYSCPVCEKSFSEDRLIKSHIKTNHPE   35 (37)
T ss_dssp             CCCEETTTTEECSSHHHHHHHHHHHCSS
T ss_pred             CCcCCCCCCCccCCHHHHHHHHHHHcCC
Confidence            3677777777777777777777666654

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.18  E-value=3.7e-07  Score=45.99  Aligned_cols=28  Identities=25%  Similarity=0.584  Sum_probs=20.3

Q ss_pred             cccccccccccccchhhhhhhhhhccCc
Q psy6546         257 RAYVCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       257 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      +||.|..|++.|.....|..|+++|.++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCC
Confidence            4677777777777777777777777654

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.16  E-value=1.3e-07  Score=62.23  Aligned_cols=41  Identities=10%  Similarity=0.198  Sum_probs=36.8

Q ss_pred             Hhhhc-ccccccccccccccchhhhhhhhhhccCcccccccc
Q psy6546         251 MVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPEEFEKVG  291 (294)
Q Consensus       251 ~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  291 (294)
                      .++|. +++|.|.+|++.|.....|..|+++|.++++|+|..
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~   58 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKR   58 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCC
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccch
Confidence            45575 899999999999999999999999999999998853

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.15  E-value=2.3e-06  Score=45.22  Aligned_cols=28  Identities=32%  Similarity=0.593  Sum_probs=19.9

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      ++|.|.+|++.|...+.|..|+++|+++
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~~h~~~   33 (35)
T 2elx_A            6 SGYVCALCLKKFVSSIRLRSHIREVHGA   33 (35)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHTSCT
T ss_pred             CCeECCCCcchhCCHHHHHHHHHHHcCC
Confidence            4677777777777777777777776654

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.14  E-value=2.3e-06  Score=42.95  Aligned_cols=27  Identities=22%  Similarity=0.749  Sum_probs=19.3

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      +|.|+.|++.|...+.|..|+++|.++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            567777777777777777777777654

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.41  E-value=3.2e-07  Score=45.04  Aligned_cols=25  Identities=32%  Similarity=0.840  Sum_probs=19.7

Q ss_pred             cccccccccccccchhhhhhhhhhc
Q psy6546         257 RAYVCELCARQFTRVDHFNHHRRLQ  281 (294)
Q Consensus       257 ~~~~C~~C~~~f~~~~~l~~H~~~~  281 (294)
                      +||.|+.|++.|.+...|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            4678888888888888888887765

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.11  E-value=2.4e-06  Score=45.18  Aligned_cols=28  Identities=29%  Similarity=0.596  Sum_probs=17.6

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      ++|.|.+|++.|...+.|..|+++|+++
T Consensus         6 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   33 (35)
T 1srk_A            6 RPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             cCeeCCCCCcccCCHHHHHHHHHHcCCC
Confidence            3666666666666666666666666553

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.11  E-value=2.7e-06  Score=42.96  Aligned_cols=28  Identities=29%  Similarity=0.546  Sum_probs=20.6

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      ++|.|..|++.|.....|..|+++|.++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            4677777777777777777777777654

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.10  E-value=1.5e-06  Score=43.65  Aligned_cols=27  Identities=37%  Similarity=0.927  Sum_probs=17.7

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      ||.|+.|++.|...+.|..|+++|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            566666666666666666666666553

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.10  E-value=1.2e-06  Score=44.52  Aligned_cols=28  Identities=39%  Similarity=0.850  Sum_probs=22.9

Q ss_pred             cccccccccccccchhhhhhh-hhhccCc
Q psy6546         257 RAYVCELCARQFTRVDHFNHH-RRLQHDP  284 (294)
Q Consensus       257 ~~~~C~~C~~~f~~~~~l~~H-~~~~h~~  284 (294)
                      +||.|+.|++.|.+.+.|..| +++|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            478888888888888888888 6777764

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.10  E-value=2.3e-06  Score=42.89  Aligned_cols=27  Identities=30%  Similarity=0.759  Sum_probs=19.8

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      +|.|.+|++.|.....|..|+++|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcCC
Confidence            677777777777777777777777654

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.10  E-value=3.4e-06  Score=44.85  Aligned_cols=28  Identities=36%  Similarity=0.700  Sum_probs=21.6

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      ++|.|..|++.|.....|..|+++|.++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            8 KPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            4788888888888888888888777764

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.09  E-value=3.5e-06  Score=51.75  Aligned_cols=36  Identities=22%  Similarity=0.275  Sum_probs=23.6

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCCcccccccc
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGVRHTCKECS  238 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~  238 (294)
                      +||.|.+|++.|..++.|..|+++|++....+..+.
T Consensus        12 kpy~C~~CgK~F~~~s~L~~H~r~Htg~~~~~~~~~   47 (66)
T 2epp_A           12 GILPCGLCGKVFTDANRLRQHEAQHGVTSLQLGYID   47 (66)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHTTTSCCCCSCC
T ss_pred             cCcCCCCCCCccCCHHHHHhhhhhhCCCcccccccc
Confidence            467777777777777777777777776654444443

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.09  E-value=3.1e-06  Score=41.74  Aligned_cols=25  Identities=24%  Similarity=0.503  Sum_probs=16.7

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHh
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLH  227 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h  227 (294)
                      +||.|..|++.|...+.|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            3666777777777777777766665

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.09  E-value=3.5e-06  Score=44.86  Aligned_cols=28  Identities=18%  Similarity=0.456  Sum_probs=21.5

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      ++|.|.+|++.|...+.|..|+++|.++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            8 KPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             CSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            4788888888888888888887777664

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.07  E-value=1.5e-05  Score=48.86  Aligned_cols=41  Identities=20%  Similarity=0.251  Sum_probs=35.0

Q ss_pred             CCCCCCccCccchhccCCHHHHHHHHHHhCCcccCCccCcc
Q psy6546          27 STTPTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECDK   67 (294)
Q Consensus        27 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~c~~c~~   67 (294)
                      ....++|.|..|++.|.....|..|+++|.+....+..++.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~~~~~~~~   48 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQLGYIDL   48 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSCCCCSCCC
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCccccccccC
Confidence            55678999999999999999999999999987666665543

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.07  E-value=1.7e-05  Score=48.41  Aligned_cols=45  Identities=18%  Similarity=0.148  Sum_probs=35.8

Q ss_pred             CCCCCCCCCCCCCccCcc--chhccCCHHHHHHHH-HHhCCc-ccCCcc
Q psy6546          20 TPTTQTSSTTPTRHPCPQ--CSRDFATVKILKTHL-KTHEGI-IYPCPE   64 (294)
Q Consensus        20 ~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~-~~~~~~-~~~c~~   64 (294)
                      .........+.+||+|+.  |++.|.....|..|+ ++|.+. |+.|..
T Consensus        15 ~~~~~~~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           15 SLEFPTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             CCCCSSSSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             CccccccccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            334455567889999975  999999999999998 578875 787654

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.06  E-value=2.5e-06  Score=45.41  Aligned_cols=28  Identities=21%  Similarity=0.548  Sum_probs=19.8

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      ++|.|.+|++.|...+.|..|+++|+++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            8 LLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            4677777777777777777777776654

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.06  E-value=3.5e-07  Score=52.39  Aligned_cols=37  Identities=16%  Similarity=0.351  Sum_probs=29.8

Q ss_pred             HHHhhhc-ccccccc--cccccccchhhhhhhhhhccCcc
Q psy6546         249 NHMVLHD-VRAYVCE--LCARQFTRVDHFNHHRRLQHDPE  285 (294)
Q Consensus       249 ~H~~~h~-~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~  285 (294)
                      .|..+|. ++||.|.  .|++.|...+.|..|+++|.+++
T Consensus         8 ~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            3445565 8899995  79999999999999999988753

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.05  E-value=2.5e-06  Score=45.83  Aligned_cols=31  Identities=26%  Similarity=0.412  Sum_probs=21.0

Q ss_pred             hcCC-CceeCCCCccccCCHHHHHHH-HHHhCC
Q psy6546         199 LHSG-ITYSCPSCSKSFNRKDRYRMH-LKLHQG  229 (294)
Q Consensus       199 ~h~~-~~~~C~~C~~~f~~~~~l~~H-~~~h~~  229 (294)
                      +|.+ +||.|+.|++.|..++.|..| ++.|.+
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            3443 477777777777777777777 666665

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.04  E-value=2.9e-06  Score=42.24  Aligned_cols=26  Identities=35%  Similarity=0.774  Sum_probs=16.5

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhC
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQ  228 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~  228 (294)
                      ++|.|+.|++.|...+.|..|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcC
Confidence            35666666666666666666666554

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.04  E-value=5.5e-06  Score=44.04  Aligned_cols=28  Identities=29%  Similarity=0.672  Sum_probs=21.9

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      ++|.|++|++.|.....|..|+++|.++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            8 KIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            4788888888888888888888877764

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.04  E-value=2.2e-06  Score=42.23  Aligned_cols=25  Identities=32%  Similarity=0.740  Sum_probs=13.6

Q ss_pred             eeCCCCccccCCHHHHHHHHHHhCC
Q psy6546         205 YSCPSCSKSFNRKDRYRMHLKLHQG  229 (294)
Q Consensus       205 ~~C~~C~~~f~~~~~l~~H~~~h~~  229 (294)
                      |.|..|++.|...+.|..|+++|++
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             ccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            4555555555555555555555543

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.02  E-value=2.9e-06  Score=45.47  Aligned_cols=28  Identities=29%  Similarity=0.622  Sum_probs=19.8

Q ss_pred             CceeCCCCccccCCH-HHHHHHHHHhCCC
Q psy6546         203 ITYSCPSCSKSFNRK-DRYRMHLKLHQGV  230 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~-~~l~~H~~~h~~~  230 (294)
                      ++|.|+.|++.|... +.|..|+++|.++
T Consensus         8 k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            8 RAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            477777777777777 7777777776654

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.01  E-value=2.4e-06  Score=42.22  Aligned_cols=24  Identities=25%  Similarity=0.628  Sum_probs=13.7

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHh
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLH  227 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h  227 (294)
                      ||.|+.|++.|...+.|..|+++|
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCCCCCCcccCCHHHHHHHHHhc
Confidence            555555555555555555555544

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.01  E-value=3.6e-06  Score=43.07  Aligned_cols=27  Identities=33%  Similarity=0.760  Sum_probs=18.0

Q ss_pred             ceeCC--CCccccCCHHHHHHHHHHhCCC
Q psy6546         204 TYSCP--SCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       204 ~~~C~--~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      ||.|+  .|++.|...+.|..|+++|+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            56665  6777777777777776666654

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.01  E-value=3e-06  Score=45.09  Aligned_cols=31  Identities=26%  Similarity=0.551  Sum_probs=25.1

Q ss_pred             CCCCcccCCccCccccChHHHHHHHhhccCcccCCcc
Q psy6546          92 TTLTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPE  128 (294)
Q Consensus        92 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~C~~  128 (294)
                      .+++||.|..|++.|.....|..|+      ||.|..
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~------py~C~~   34 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ------AYYCSH   34 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH------HHTSTT
T ss_pred             CCccCeECCCCCCccCCHhHccCcC------CeECcC
Confidence            4678889999999999999888887      677754

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.01  E-value=1.4e-06  Score=46.83  Aligned_cols=29  Identities=17%  Similarity=0.605  Sum_probs=21.8

Q ss_pred             cccccccc--ccccccchhhhhhhhhhccCc
Q psy6546         256 VRAYVCEL--CARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       256 ~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      +++|.|.+  |++.|...+.|..|+++|.++
T Consensus         6 ~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             CCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            66778874  888888888888887777664

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.99  E-value=2.7e-06  Score=42.62  Aligned_cols=27  Identities=37%  Similarity=0.774  Sum_probs=16.2

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      ||.|+.|++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            456666666666666666666655543

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.97  E-value=5.5e-06  Score=41.76  Aligned_cols=27  Identities=22%  Similarity=0.481  Sum_probs=16.8

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      +|.|..|++.|...+.|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccC
Confidence            456666666666666666666665543

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.97  E-value=1e-05  Score=42.91  Aligned_cols=31  Identities=26%  Similarity=0.545  Sum_probs=27.8

Q ss_pred             CCCCCCccCccchhccCCHHHHHHHHHHhCC
Q psy6546          27 STTPTRHPCPQCSRDFATVKILKTHLKTHEG   57 (294)
Q Consensus        27 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~   57 (294)
                      ..+.++|.|+.|++.|.....|..|++.|.+
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTA   34 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSS
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcC
Confidence            4556789999999999999999999999865

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.20  E-value=1.1e-06  Score=44.32  Aligned_cols=27  Identities=26%  Similarity=0.614  Sum_probs=16.7

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      ||.|..|++.|...+.|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            456666666666666666666665543

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.93  E-value=6.1e-06  Score=42.49  Aligned_cols=28  Identities=39%  Similarity=0.628  Sum_probs=17.2

Q ss_pred             CceeCC--CCccccCCHHHHHHHHHHhCCC
Q psy6546         203 ITYSCP--SCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       203 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      +||.|.  .|++.|...+.|..|+++|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            356666  5666666666666666666554

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.90  E-value=3.8e-06  Score=42.09  Aligned_cols=26  Identities=31%  Similarity=0.800  Sum_probs=18.8

Q ss_pred             cccccc--cccccccchhhhhhhhhhcc
Q psy6546         257 RAYVCE--LCARQFTRVDHFNHHRRLQH  282 (294)
Q Consensus       257 ~~~~C~--~C~~~f~~~~~l~~H~~~~h  282 (294)
                      ++|.|+  .|++.|.+.+.|..|+++|.
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            367777  77777777777777777665

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.10  E-value=1.8e-06  Score=42.21  Aligned_cols=24  Identities=29%  Similarity=0.747  Sum_probs=12.4

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHh
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLH  227 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h  227 (294)
                      ||.|++|++.|...+.|..|+++|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            445555555555555555555443

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.86  E-value=1e-05  Score=46.31  Aligned_cols=29  Identities=21%  Similarity=0.512  Sum_probs=18.5

Q ss_pred             CceeCCCCccccCCHHHHHHHHH-HhCCCc
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLK-LHQGVR  231 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~  231 (294)
                      ++|.|.+|++.|.....|..|++ +|.++.
T Consensus         6 kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            6 KPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             SCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             cCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            46777777777777777777776 666543

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.85  E-value=9.4e-06  Score=43.68  Aligned_cols=28  Identities=21%  Similarity=0.573  Sum_probs=15.9

Q ss_pred             CceeCC--CCccccCCHHHHHHHHHHhCCC
Q psy6546         203 ITYSCP--SCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       203 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      ++|.|.  .|++.|...+.|..|+++|.++
T Consensus         5 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   34 (38)
T 1bhi_A            5 KPFLCTAPGCGQRFTNEDHLAVHKHKHEMT   34 (38)
T ss_dssp             CCEECCCTTTCCEESSHHHHHHHHHHHHTT
T ss_pred             cceECCCCCCCcccCCHHHHHHHHHHhCCC
Confidence            355665  3666666666666665555543

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.06  E-value=2.2e-06  Score=43.39  Aligned_cols=27  Identities=26%  Similarity=0.732  Sum_probs=16.8

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      ||.|..|++.|...+.|..|+++|+++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            566666666666666666666665543

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.81  E-value=1.7e-05  Score=42.39  Aligned_cols=28  Identities=29%  Similarity=0.628  Sum_probs=20.7

Q ss_pred             CceeCCC--CccccCCHHHHHHHHHHhCCC
Q psy6546         203 ITYSCPS--CSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       203 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      ++|.|.+  |++.|...+.|..|+++|.++
T Consensus         7 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            4777774  888887777777777777664

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.79  E-value=7.5e-06  Score=41.33  Aligned_cols=26  Identities=38%  Similarity=0.897  Sum_probs=13.9

Q ss_pred             ceeCCCCccccCCHHHHHHH-HHHhCC
Q psy6546         204 TYSCPSCSKSFNRKDRYRMH-LKLHQG  229 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H-~~~h~~  229 (294)
                      ||.|..|++.|...+.|..| +++|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccC
Confidence            45555555555555555555 344444

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.76  E-value=1.4e-06  Score=45.15  Aligned_cols=27  Identities=30%  Similarity=0.480  Sum_probs=15.0

Q ss_pred             cccccccccccCHHHHHHHHhhhc-ccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRA  258 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~  258 (294)
                      |.|..|++.|...+.|..|+++|. ++|
T Consensus         3 ~~C~~C~k~f~~~~~L~~H~~~H~~~kp   30 (32)
T 2kfq_A            3 FACPACPKRFMRSDALSKHIKTAFIVVA   30 (32)
T ss_dssp             SSSSSSCTTHHHHHTTSSSTTSSSSSSS
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHccCCC
Confidence            555555555555555555555554 444

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.73  E-value=1.8e-05  Score=39.43  Aligned_cols=25  Identities=36%  Similarity=0.866  Sum_probs=14.7

Q ss_pred             ceeCC--CCccccCCHHHHHHHHHHhC
Q psy6546         204 TYSCP--SCSKSFNRKDRYRMHLKLHQ  228 (294)
Q Consensus       204 ~~~C~--~C~~~f~~~~~l~~H~~~h~  228 (294)
                      +|.|.  .|++.|...+.|..|+++|.
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            45565  66666666666666655554

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.68  E-value=6.1e-06  Score=46.99  Aligned_cols=33  Identities=27%  Similarity=0.522  Sum_probs=23.6

Q ss_pred             hhcCC-CceeCC--CCccccCCHHHHHHHHHHhCCC
Q psy6546         198 KLHSG-ITYSCP--SCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       198 ~~h~~-~~~~C~--~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      ..|.+ ++|.|.  .|++.|...+.|..|+++|.++
T Consensus        11 ~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           11 VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             CEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             hccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            34554 478884  6888888888888888877765

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.99  E-value=0.0017  Score=39.38  Aligned_cols=15  Identities=27%  Similarity=0.370  Sum_probs=7.1

Q ss_pred             CccccCCHHHHHHHH
Q psy6546         210 CSKSFNRKDRYRMHL  224 (294)
Q Consensus       210 C~~~f~~~~~l~~H~  224 (294)
                      |++.|.+...|..|+
T Consensus         9 C~~~f~~~~~l~~Hv   23 (64)
T 1zw8_A            9 CPESASSLFDLQRHL   23 (64)
T ss_dssp             CCCCCSSHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHH
Confidence            444444444444444

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.0009  Score=40.60  Aligned_cols=48  Identities=25%  Similarity=0.396  Sum_probs=41.1

Q ss_pred             ccccccccCHHHHHHHH-hhhc-c------cccccc--cccccccchhhhhhhhhhcc
Q psy6546         235 KECSKEFSNEYNLKNHM-VLHD-V------RAYVCE--LCARQFTRVDHFNHHRRLQH  282 (294)
Q Consensus       235 ~~C~~~f~~~~~l~~H~-~~h~-~------~~~~C~--~C~~~f~~~~~l~~H~~~~h  282 (294)
                      ..|++.|.+...|..|+ ..|- .      .+|.|.  .|++.+.....|..|++..|
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            56999999999999998 5773 2      379995  99999999999999998765

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.55  E-value=0.0052  Score=33.71  Aligned_cols=25  Identities=28%  Similarity=0.668  Sum_probs=23.1

Q ss_pred             CCccCccchhccCCHHHHHHHHHHh
Q psy6546          31 TRHPCPQCSRDFATVKILKTHLKTH   55 (294)
Q Consensus        31 ~~~~C~~C~~~f~~~~~l~~H~~~~   55 (294)
                      .+|.|+.|+..|+....|+.||+.-
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmkyc   35 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYC   35 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhhc
Confidence            6799999999999999999999854

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.91  E-value=0.0014  Score=45.86  Aligned_cols=81  Identities=15%  Similarity=0.203  Sum_probs=45.4

Q ss_pred             CCCccCccchhccCCHHHHHHHH--HHhCCc--ccCCccCccchhccccCCCCCCCccchhhcccCCCCCcccCCccCcc
Q psy6546          30 PTRHPCPQCSRDFATVKILKTHL--KTHEGI--IYPCPECDKTFLSTLTGTPQGARGRAVYLSRMSTTLTRHPCPQCSRD  105 (294)
Q Consensus        30 ~~~~~C~~C~~~f~~~~~l~~H~--~~~~~~--~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~  105 (294)
                      .+++.|..|+..|.+...+..|.  +.|...  .+.+. ++...      .....................|.|..|++.
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~  102 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAI-NQGED------SVPAKKFKAAPAEISDGEDRSKCCPVCNMT  102 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHH-TTCCC------CCSCCCCSCCSSCCSSCCCTTTEETTTTEE
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcc-cCccc------CCCCCccCCCccccccCCCCCeEcCCCCCE
Confidence            35689999999999999999998  455332  12111 10000      000000000011122344566778888888


Q ss_pred             ccChHHHHHHHh
Q psy6546         106 FATVKILKTHLK  117 (294)
Q Consensus       106 f~~~~~l~~H~~  117 (294)
                      |.+...|..|..
T Consensus       103 f~s~~~~~~H~~  114 (127)
T 1zu1_A          103 FSSPVVAESHYI  114 (127)
T ss_dssp             CSSHHHHHHHHT
T ss_pred             eCCHHHHHHHHC
Confidence            888777777763

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.67  E-value=0.0054  Score=42.88  Aligned_cols=73  Identities=16%  Similarity=0.239  Sum_probs=49.5

Q ss_pred             CceeCCCCccccCCHHHHHHHH--HHhCCCc--cccccc------cccccCHHHHHHHHhhhc-ccccccccccccccch
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHL--KLHQGVR--HTCKEC------SKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRV  271 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~--~~h~~~~--~~C~~C------~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~  271 (294)
                      +++.|.+|+..|.+.+.+..|.  +.|...-  +.+...      +..+....    +...+. .+.|.|..|+..|...
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~C~~~f~s~  106 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPVCNMTFSSP  106 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETTTTEECSSH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCCCCCEeCCH
Confidence            4889999999999999999998  4554321  333211      11222111    112232 6789999999999999


Q ss_pred             hhhhhhhh
Q psy6546         272 DHFNHHRR  279 (294)
Q Consensus       272 ~~l~~H~~  279 (294)
                      ..|..|..
T Consensus       107 ~~~~~H~~  114 (127)
T 1zu1_A          107 VVAESHYI  114 (127)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHC
Confidence            99999974

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.47  E-value=0.011  Score=32.42  Aligned_cols=23  Identities=26%  Similarity=0.540  Sum_probs=19.7

Q ss_pred             CceeCCCCccccCCHHHHHHHHH
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLK  225 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~  225 (294)
                      .+|.|+.|+..|.....|+.||+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            37889999999998888998887

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.44  E-value=0.0043  Score=42.68  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=22.1

Q ss_pred             ccccccccccccccchhhhhhhhhhc
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQ  281 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~  281 (294)
                      +++|.|..|++.|.+...|..|+++.
T Consensus        48 ekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           48 GGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             CcceEcccCcchhCCHHHHHHHHhhh
Confidence            78899999999999999998888664

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.41  E-value=0.035  Score=40.91  Aligned_cols=64  Identities=19%  Similarity=0.330  Sum_probs=31.1

Q ss_pred             HhHHHHHhhhCCCCccCCCCCcccCCHHHHHHHHHh-hcCCCcccCcchhccCCchHHHhHHhhcCC
Q psy6546         137 SGLREHRKVHAGVRYICHACPREFSSEATMKAHVAS-HNGVQHACDQCDRTFSCMPYLRQHQKLHSG  202 (294)
Q Consensus       137 ~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~-~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  202 (294)
                      ..|..|..........|+.|+..+ ....|..|... -......|+.|+..+. ...+..|...+.+
T Consensus        97 ~~l~~H~~~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~-~~~l~~H~~~~~~  161 (170)
T 3hcs_A           97 RHLEDHQAHCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMA-FEDKEIHDQNCPL  161 (170)
T ss_dssp             GGHHHHHTTCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEE-GGGHHHHHTTCCC
T ss_pred             hHHHHHHhcCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccC-HHHHHhHHHhCcC
Confidence            445555544333445555565555 23455555532 2223445666655443 2345555555544

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=94.06  E-value=0.016  Score=39.89  Aligned_cols=31  Identities=29%  Similarity=0.419  Sum_probs=25.9

Q ss_pred             ccCCCCCcccCCccCccccChHHHHHHHhhc
Q psy6546          89 RMSTTLTRHPCPQCSRDFATVKILKTHLKTH  119 (294)
Q Consensus        89 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  119 (294)
                      ...++.++|.|..|++.|.+...|..|+++.
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            4466788999999999999999999997654

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=93.72  E-value=0.018  Score=42.47  Aligned_cols=14  Identities=21%  Similarity=0.653  Sum_probs=8.1

Q ss_pred             CcccCCccCccccC
Q psy6546          95 TRHPCPQCSRDFAT  108 (294)
Q Consensus        95 ~~~~C~~C~~~f~~  108 (294)
                      ..+.|+.|...|..
T Consensus        17 ~~~~C~IC~~~~~~   30 (170)
T 3hcs_A           17 SKYECPICLMALRE   30 (170)
T ss_dssp             GGGBCTTTCSBCSS
T ss_pred             CCCCCCCCChhhcC
Confidence            34566666666543

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=93.36  E-value=0.11  Score=26.57  Aligned_cols=23  Identities=30%  Similarity=0.657  Sum_probs=15.8

Q ss_pred             ceeCCCCccccCCHHHHHHHHHH
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKL  226 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~  226 (294)
                      .|.|++|.+.|.+...|..|...
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~   27 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEA   27 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHh
Confidence            46677777777777777777654

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=91.74  E-value=0.064  Score=27.46  Aligned_cols=26  Identities=23%  Similarity=0.639  Sum_probs=15.6

Q ss_pred             ccccccccccccchhhhhhhhhhccC
Q psy6546         258 AYVCELCARQFTRVDHFNHHRRLQHD  283 (294)
Q Consensus       258 ~~~C~~C~~~f~~~~~l~~H~~~~h~  283 (294)
                      .|.|++|.+.|.+...|..|....|.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccc
Confidence            36666666666666666666544443

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=90.10  E-value=0.31  Score=25.04  Aligned_cols=28  Identities=21%  Similarity=0.365  Sum_probs=24.0

Q ss_pred             CCCCCccCccchhccCCHHHHHHHHHHh
Q psy6546          28 TTPTRHPCPQCSRDFATVKILKTHLKTH   55 (294)
Q Consensus        28 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~   55 (294)
                      .....+.|..|+..|+....+..|.+..
T Consensus         4 ~~~~~~~C~~C~IsF~~l~ty~aHKk~Y   31 (36)
T 1fu9_A            4 AEVMKKYCSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             CCCCCSEETTTTEECSSHHHHHHHHHHT
T ss_pred             CccCcCeeccccceehhhHHHhhhheec
Confidence            3456789999999999999999998753

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=88.62  E-value=0.17  Score=24.98  Aligned_cols=25  Identities=32%  Similarity=0.810  Sum_probs=19.1

Q ss_pred             ccccccccccchhhhhhhhhhccCc
Q psy6546         260 VCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       260 ~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      -|..|.+.+++..+|.+|++.-|+.
T Consensus        11 hcrfckkkysdvknlikhire~hd~   35 (37)
T 2elu_A           11 HCRFCKKKYSDVKNLIKHIRDAHDP   35 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4777888888888888888776653

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=86.70  E-value=0.76  Score=29.16  Aligned_cols=34  Identities=29%  Similarity=0.562  Sum_probs=26.3

Q ss_pred             CCCCCCCCCCCccCccchhccCCHHHHHHHHHHhCCc
Q psy6546          22 TTQTSSTTPTRHPCPQCSRDFATVKILKTHLKTHEGI   58 (294)
Q Consensus        22 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~   58 (294)
                      .+...+..+....|-+||+.|..   |..|+..+++.
T Consensus        11 v~~kksi~~d~iiClecGK~fK~---LkRHL~~~hgl   44 (87)
T 2jsp_A           11 VSVRKSVQDDHIVCLECGGSFKS---LKRHLTTHHSM   44 (87)
T ss_dssp             CCSSTTBCSSCEECTBTCCEESB---HHHHHHHTTCS
T ss_pred             CChhhccCCCceEecccchhhHH---HHHHHHHccCC
Confidence            34455556667899999999995   67999997765

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=85.62  E-value=0.5  Score=26.72  Aligned_cols=21  Identities=14%  Similarity=0.488  Sum_probs=19.3

Q ss_pred             ccCccchhccCCHHHHHHHHH
Q psy6546          33 HPCPQCSRDFATVKILKTHLK   53 (294)
Q Consensus        33 ~~C~~C~~~f~~~~~l~~H~~   53 (294)
                      -.|..|+..|+....+..|+.
T Consensus        14 ~eC~lC~vkYs~r~slqDHIF   34 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIF   34 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHT
T ss_pred             ccccccCcccccccchhhhhc
Confidence            489999999999999999984

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=82.79  E-value=0.78  Score=27.17  Aligned_cols=33  Identities=15%  Similarity=0.372  Sum_probs=25.2

Q ss_pred             CCCccCccchhccCCHHHHHHHHHHhCCcccCCccCccchhcc
Q psy6546          30 PTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFLST   72 (294)
Q Consensus        30 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~c~~c~~~~~~~   72 (294)
                      ...|.|..|+..+...          .+.++.|+.|+..+...
T Consensus        19 ~v~Y~C~~Cg~~~~l~----------~~~~iRC~~CG~RILyK   51 (63)
T 3h0g_L           19 TMIYLCADCGARNTIQ----------AKEVIRCRECGHRVMYK   51 (63)
T ss_dssp             CCCCBCSSSCCBCCCC----------SSSCCCCSSSCCCCCBC
T ss_pred             CeEEECCCCCCeeecC----------CCCceECCCCCcEEEEE
Confidence            4579999999999844          24589999998766443

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=82.63  E-value=0.33  Score=30.82  Aligned_cols=24  Identities=33%  Similarity=0.736  Sum_probs=14.6

Q ss_pred             cccccccccccCHHHHHHHHhh-hcccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVL-HDVRA  258 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~-h~~~~  258 (294)
                      ..|-+||+.|..   |.+|..+ |+..|
T Consensus        22 iiClecGK~fK~---LkRHL~~~hgltp   46 (87)
T 2jsp_A           22 IVCLECGGSFKS---LKRHLTTHHSMTP   46 (87)
T ss_dssp             EECTBTCCEESB---HHHHHHHTTCSCH
T ss_pred             eEecccchhhHH---HHHHHHHccCCCH
Confidence            467777777763   5577666 44443

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=81.34  E-value=2.2  Score=29.09  Aligned_cols=30  Identities=27%  Similarity=0.432  Sum_probs=26.1

Q ss_pred             CCCCccCccchhccCCHHHHHHHHHHhCCc
Q psy6546          29 TPTRHPCPQCSRDFATVKILKTHLKTHEGI   58 (294)
Q Consensus        29 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~   58 (294)
                      ...+..|-+|...|.+...+..||+..|+.
T Consensus        12 e~~~~~CLFCd~~~~s~~~~l~H~k~~H~F   41 (121)
T 1wir_A           12 GRQHTPCLFCDRLFASAEETFSHCKLEHQF   41 (121)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHSSCC
T ss_pred             CCCceeEecCCCcccCHHHHHHHHHHhcCC
Confidence            345699999999999999999999987763

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=80.78  E-value=1  Score=27.90  Aligned_cols=37  Identities=22%  Similarity=0.625  Sum_probs=16.0

Q ss_pred             eeCCCCccccCCHHHHHHHHHHhCCC-cccccccccccc
Q psy6546         205 YSCPSCSKSFNRKDRYRMHLKLHQGV-RHTCKECSKEFS  242 (294)
Q Consensus       205 ~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~C~~C~~~f~  242 (294)
                      |.|..||..+.. ..|..|...-.+. .|.|..|+..|.
T Consensus        11 F~C~~Cgd~lKK-~kv~~H~~~Cr~~~~~SCIDC~~~F~   48 (79)
T 1wjv_A           11 FTCNACGESVKK-IQVEKHVSNCRNCECLSCIDCGKDFW   48 (79)
T ss_dssp             EEESSSCCEEET-THHHHHHHHCTTCCEEEETTTTEEEE
T ss_pred             EEcCCCCCeeec-ccchhHHhhCCCCCcEEecccCCeeC
Confidence            445555544432 2344444333332 244555554444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	294
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.001
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.003

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (77), Expect = 0.001
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 205 YSCPSCSKSFNRKDRYRMHLKLHQG-VRHTCKECSKEFSNEYNLKNHMVLH 254
           Y C  C KSF  K +   H+ +H G   + C  C K+F  +++L  HM +H
Sbjct: 4   YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (75), Expect = 0.003
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 182 QCDRTFSCMPYLRQHQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLH 227
           QC ++F+      +H  +H G   Y C  C K F  K     H+K+H
Sbjct: 7   QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.57
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.56
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.13
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.07
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.06
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.04
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.01
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.01
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.0
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.97
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.97
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.97
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.95
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.95
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.91
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.9
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.9
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.89
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.87
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.87
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.76
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.76
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.74
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.72
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.7
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.69
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.65
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.63
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.63
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.63
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.6
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.57
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.54
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.53
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.52
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.51
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.48
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.4
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.39
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.35
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.28
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.11
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.1
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.09
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.03
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.01
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.96
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.86
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.84
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.84
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.83
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.82
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.8
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.77
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.77
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.75
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.75
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.71
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.63
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.61
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.58
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.53
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.48
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.41
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.41
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.35
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.34
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.24
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.18
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.15
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.15
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.01
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.89
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.71
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.52
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.51
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.41
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.38
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.34
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.33
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.31
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.21
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.17
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.16
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.13
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.07
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.67
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.65
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.26
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.22
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.05
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.04
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	94.95
d1y0jb1	36	U-shaped transcription factor, different fingers {	94.83
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.6
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	94.52
d1y0jb1	36	U-shaped transcription factor, different fingers {	94.49
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.01
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	93.86
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	93.59
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	92.9
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	91.74
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	90.88
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	90.82
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	90.56
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	90.13
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	90.06
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	90.02
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	89.46
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	89.43
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	89.25
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	89.11
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	89.08
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	88.96
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	88.36
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	88.1
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	86.94
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	86.92
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	84.46
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	83.66
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	81.48

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.8e-16  Score=90.01  Aligned_cols=49  Identities=29%  Similarity=0.737  Sum_probs=27.6

Q ss_pred             cccccccccccCHHHHHHHHhhhc-ccccccccccccccchhhhhhhhhhc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQ  281 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~  281 (294)
                      |.| .||+.|.....|..|+++|. ++||.|.+|+++|.+.+.|..|+++|
T Consensus         4 y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           4 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             EEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            555 35555555555555555554 55555555555555555555555544

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2e-15  Score=88.18  Aligned_cols=52  Identities=37%  Similarity=0.765  Sum_probs=46.7

Q ss_pred             CCceeCCCCccccCCHHHHHHHHHHhCCCc-cccccccccccCHHHHHHHHhhh
Q psy6546         202 GITYSCPSCSKSFNRKDRYRMHLKLHQGVR-HTCKECSKEFSNEYNLKNHMVLH  254 (294)
Q Consensus       202 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~h  254 (294)
                      ++||.| .||+.|.....|..|+++|++++ |.|.+||++|...+.|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            368999 49999999999999999999887 99999999999999999999887

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.8e-12  Score=68.12  Aligned_cols=36  Identities=22%  Similarity=0.523  Sum_probs=31.7

Q ss_pred             HHHhhhc-ccccccccccccccchhhhhhhhhhccCc
Q psy6546         249 NHMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       249 ~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      +|+++|. ++||.|++||++|.+.++|..|+++|.++
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            4778886 89999999999999999999999999875

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=7.9e-12  Score=66.13  Aligned_cols=34  Identities=26%  Similarity=0.678  Sum_probs=23.8

Q ss_pred             ccccccccccccccchhhhhhhhh-hccCcccccc
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRR-LQHDPEEFEK  289 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~-~~h~~~~~~~  289 (294)
                      ++||+|.+||++|.+.++|..|++ +|.+++||+|
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C   37 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC   37 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCC
Confidence            467777777777777777777754 5777777766

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.5e-11  Score=64.24  Aligned_cols=34  Identities=26%  Similarity=0.635  Sum_probs=29.0

Q ss_pred             hhhc-ccccccccccccccchhhhhhhhhhccCcc
Q psy6546         252 VLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPE  285 (294)
Q Consensus       252 ~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  285 (294)
                      ++|. ++||+|.+|+++|.+.+.|..|+++|++++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            4675 889999999999999999999999988764

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.06  E-value=2.4e-11  Score=59.87  Aligned_cols=29  Identities=38%  Similarity=0.934  Sum_probs=26.2

Q ss_pred             cccccccccccccchhhhhhhhhhccCcc
Q psy6546         257 RAYVCELCARQFTRVDHFNHHRRLQHDPE  285 (294)
Q Consensus       257 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  285 (294)
                      +||+|++|+++|++.+.|..|+++|.+++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            68999999999999999999999999875

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=2e-11  Score=59.35  Aligned_cols=28  Identities=32%  Similarity=0.822  Sum_probs=24.1

Q ss_pred             ccccccccccccccchhhhhhhhhhccC
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQHD  283 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~  283 (294)
                      ++||+|++|+++|++.++|..|+++|.|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5789999999999999999999888865

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.3e-11  Score=58.77  Aligned_cols=29  Identities=24%  Similarity=0.761  Sum_probs=25.6

Q ss_pred             cccccccccccccchhhhhhhhhhccCcc
Q psy6546         257 RAYVCELCARQFTRVDHFNHHRRLQHDPE  285 (294)
Q Consensus       257 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  285 (294)
                      +||.|++|+++|++.++|..|+++|.+++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            58999999999999999999999998864

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.4e-11  Score=60.65  Aligned_cols=32  Identities=25%  Similarity=0.648  Sum_probs=25.6

Q ss_pred             hhc-ccccccccccccccchhhhhhhhhhccCc
Q psy6546         253 LHD-VRAYVCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       253 ~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      +|. ++||+|.+|+++|.+.+.|..|+++|.++
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            454 78888888888888888888888888764

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=3e-11  Score=63.55  Aligned_cols=33  Identities=27%  Similarity=0.598  Sum_probs=26.5

Q ss_pred             HHhhhc-ccccccccccccccchhhhhhhhhhcc
Q psy6546         250 HMVLHD-VRAYVCELCARQFTRVDHFNHHRRLQH  282 (294)
Q Consensus       250 H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h  282 (294)
                      |.++|. ++||+|++|+++|+++++|..|+++|-
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            457775 888888888888888888888888774

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.5e-10  Score=60.21  Aligned_cols=33  Identities=42%  Similarity=0.900  Sum_probs=17.0

Q ss_pred             CceeCCCCccccCCHHHHHHHHH-HhCCCc-cccc
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLK-LHQGVR-HTCK  235 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~-~~C~  235 (294)
                      +||+|.+||+.|..+++|..|++ +|++++ |+|.
T Consensus         4 Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            45555555555555555555543 355544 5553

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=5.2e-11  Score=61.99  Aligned_cols=34  Identities=24%  Similarity=0.511  Sum_probs=29.2

Q ss_pred             hhhc-ccccccccccccccchhhhhhhhhhccCcc
Q psy6546         252 VLHD-VRAYVCELCARQFTRVDHFNHHRRLQHDPE  285 (294)
Q Consensus       252 ~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  285 (294)
                      ++|. ++||+|++|+++|++.++|..|++.+|+++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~~   35 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN   35 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCCC
Confidence            4675 899999999999999999999988877754

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.97  E-value=2e-10  Score=56.42  Aligned_cols=29  Identities=21%  Similarity=0.701  Sum_probs=24.3

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCCc
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGVR  231 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  231 (294)
                      +||.|++|++.|..++.|.+|+++|+|++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            47888888888888888888888888864

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=2.3e-10  Score=55.51  Aligned_cols=28  Identities=29%  Similarity=0.771  Sum_probs=23.0

Q ss_pred             CCceeCCCCccccCCHHHHHHHHHHhCC
Q psy6546         202 GITYSCPSCSKSFNRKDRYRMHLKLHQG  229 (294)
Q Consensus       202 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~  229 (294)
                      ++||+|.+|++.|..+++|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            3688888888888888888888888865

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=9e-11  Score=62.13  Aligned_cols=35  Identities=26%  Similarity=0.508  Sum_probs=25.1

Q ss_pred             HHhhcCC-CceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         196 HQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       196 H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      |+++|++ +||.|++||++|..+++|..|+++|+|+
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            5566666 3777777777777777777777777764

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.2e-10  Score=55.58  Aligned_cols=29  Identities=38%  Similarity=0.833  Sum_probs=22.1

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCCc
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGVR  231 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  231 (294)
                      +||.|++|+++|..+++|.+|+++|+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            46778888888888888888888877753

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=2.1e-10  Score=58.92  Aligned_cols=29  Identities=28%  Similarity=0.671  Sum_probs=24.5

Q ss_pred             ccccccccccccccchhhhhhhhhhccCc
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      ++||+|.+|++.|+++++|..|+++|.+.
T Consensus         5 ekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           5 KRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CccccCCCCCCcccChHHHHHHccccCCc
Confidence            78888888888888888888888888764

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=7.7e-10  Score=57.56  Aligned_cols=33  Identities=33%  Similarity=0.701  Sum_probs=23.3

Q ss_pred             hcCC-CceeCCCCccccCCHHHHHHHHHHhCCCc
Q psy6546         199 LHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGVR  231 (294)
Q Consensus       199 ~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  231 (294)
                      +|++ +||+|.+|+++|..++.|..|+++|+++.
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            4555 37777777777777777777777776654

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.3e-10  Score=54.83  Aligned_cols=25  Identities=24%  Similarity=0.707  Sum_probs=16.3

Q ss_pred             cccccccccccccchhhhhhhhhhc
Q psy6546         257 RAYVCELCARQFTRVDHFNHHRRLQ  281 (294)
Q Consensus       257 ~~~~C~~C~~~f~~~~~l~~H~~~~  281 (294)
                      +||+|+.||++|.+.+.|..|+++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            4666666666666666666666665

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=5.5e-10  Score=52.65  Aligned_cols=25  Identities=28%  Similarity=0.700  Sum_probs=17.2

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHh
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLH  227 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h  227 (294)
                      +||+|.+||+.|..++.|.+|+++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            3667777777777777777777666

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=9.5e-10  Score=55.61  Aligned_cols=31  Identities=39%  Similarity=0.801  Sum_probs=22.2

Q ss_pred             cCC-CceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         200 HSG-ITYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       200 h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      |++ +||+|.+|+++|..++.|..|+++|+|+
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            444 4777777777777777777777777764

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.1e-09  Score=54.01  Aligned_cols=28  Identities=18%  Similarity=0.628  Sum_probs=24.1

Q ss_pred             ccccccc--ccccccchhhhhhhhhhccCc
Q psy6546         257 RAYVCEL--CARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       257 ~~~~C~~--C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      +||+|++  |+++|++.+.|..|+++|.++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5888977  999999999999999988874

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=8.3e-10  Score=57.89  Aligned_cols=33  Identities=33%  Similarity=0.765  Sum_probs=20.9

Q ss_pred             HHhhcCC-CceeCCCCccccCCHHHHHHHHHHhC
Q psy6546         196 HQKLHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQ  228 (294)
Q Consensus       196 H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~  228 (294)
                      |.++|++ +||+|++|+++|..+++|..|+++|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            4455655 36666666666666666666666654

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=4.1e-09  Score=51.84  Aligned_cols=28  Identities=32%  Similarity=0.672  Sum_probs=23.5

Q ss_pred             CceeCCC--CccccCCHHHHHHHHHHhCCC
Q psy6546         203 ITYSCPS--CSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       203 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      +||.|++  |+++|..+++|..|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            4788877  888888888888888888875

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.1e-09  Score=54.04  Aligned_cols=28  Identities=18%  Similarity=0.597  Sum_probs=23.5

Q ss_pred             ccccccc--ccccccchhhhhhhhhhccCc
Q psy6546         257 RAYVCEL--CARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       257 ~~~~C~~--C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      +||+|++  |+++|++.+.|..|+++|.++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5888876  899999888999998888774

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=5.4e-09  Score=51.54  Aligned_cols=28  Identities=29%  Similarity=0.668  Sum_probs=23.6

Q ss_pred             CceeCCC--CccccCCHHHHHHHHHHhCCC
Q psy6546         203 ITYSCPS--CSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       203 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      +||.|++  |+++|..+++|..|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            4788876  999999999999999888875

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.6e-09  Score=56.10  Aligned_cols=26  Identities=50%  Similarity=0.999  Sum_probs=13.6

Q ss_pred             ccccccCHHHHHHHHhhhc-ccccccc
Q psy6546         237 CSKEFSNEYNLKNHMVLHD-VRAYVCE  262 (294)
Q Consensus       237 C~~~f~~~~~l~~H~~~h~-~~~~~C~  262 (294)
                      |+++|...+.|+.|+++|. ++||+|+
T Consensus         9 C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           9 CGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             TCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             CCCeeCChhHhccccCeeCCCCCEeCC
Confidence            5555555555555555553 5555553

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=4.7e-09  Score=52.24  Aligned_cols=29  Identities=31%  Similarity=0.858  Sum_probs=25.0

Q ss_pred             cccccc--cccccccchhhhhhhhhhccCcc
Q psy6546         257 RAYVCE--LCARQFTRVDHFNHHRRLQHDPE  285 (294)
Q Consensus       257 ~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~  285 (294)
                      +||+|+  .|+++|++.++|..|+++|.+++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            589994  69999999999999999998864

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=7.7e-09  Score=53.40  Aligned_cols=26  Identities=23%  Similarity=0.599  Sum_probs=14.0

Q ss_pred             ccccccchhhhhhhhhhccCcccccc
Q psy6546         264 CARQFTRVDHFNHHRRLQHDPEEFEK  289 (294)
Q Consensus       264 C~~~f~~~~~l~~H~~~~h~~~~~~~  289 (294)
                      |+++|...+.|..|+++|.+++||+|
T Consensus         9 C~k~F~~~~~L~~H~r~Htgekpy~C   34 (36)
T d2dlka2           9 CGKSFNFKKHLKEHMKLHSDTRDYIC   34 (36)
T ss_dssp             TCCEESSHHHHHHHHHHHHTSCCCSC
T ss_pred             CCCeeCChhHhccccCeeCCCCCEeC
Confidence            55555555555555555555555554

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.63  E-value=6.4e-10  Score=61.53  Aligned_cols=40  Identities=13%  Similarity=0.335  Sum_probs=33.3

Q ss_pred             HHHHHHHhhhc-cccccccc--ccccccchhhhhhhhhhccCcc
Q psy6546         245 YNLKNHMVLHD-VRAYVCEL--CARQFTRVDHFNHHRRLQHDPE  285 (294)
Q Consensus       245 ~~l~~H~~~h~-~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~  285 (294)
                      +.|..|+. |. ++||+|.+  |++.|+..++|..|+++|.+++
T Consensus         5 ~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             chhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            34566665 54 89999977  9999999999999999999875

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.6e-08  Score=52.33  Aligned_cols=31  Identities=29%  Similarity=0.628  Sum_probs=22.1

Q ss_pred             hcCC-CceeCCCCccccCCHHHHHHHHHHhCC
Q psy6546         199 LHSG-ITYSCPSCSKSFNRKDRYRMHLKLHQG  229 (294)
Q Consensus       199 ~h~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~  229 (294)
                      +|++ +||+|++|++.|..+++|..|++.+++
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccccC
Confidence            4565 478888888888888888888765443

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=1.5e-08  Score=51.80  Aligned_cols=31  Identities=29%  Similarity=0.403  Sum_probs=23.9

Q ss_pred             CCCCCcccCCccCccccChHHHHHHHhhccC
Q psy6546          91 STTLTRHPCPQCSRDFATVKILKTHLKTHEG  121 (294)
Q Consensus        91 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  121 (294)
                      +++++||+|..|++.|.....|..|+++|.+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCC
Confidence            4567788888888888888888888877765

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=1.2e-08  Score=50.94  Aligned_cols=29  Identities=24%  Similarity=0.676  Sum_probs=24.3

Q ss_pred             cccccccc--ccccccchhhhhhhhhhccCc
Q psy6546         256 VRAYVCEL--CARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       256 ~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      ++||.|++  |+++|++.++|..|+++|..+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            57899977  999999999999998888753

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=7.7e-09  Score=50.37  Aligned_cols=27  Identities=33%  Similarity=0.871  Sum_probs=21.9

Q ss_pred             ccccccc--ccccccchhhhhhhhhhccC
Q psy6546         257 RAYVCEL--CARQFTRVDHFNHHRRLQHD  283 (294)
Q Consensus       257 ~~~~C~~--C~~~f~~~~~l~~H~~~~h~  283 (294)
                      +||+|++  |+++|++.++|..|+++|.|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            5788866  88888888888888888764

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2.5e-08  Score=49.51  Aligned_cols=29  Identities=31%  Similarity=0.712  Sum_probs=22.6

Q ss_pred             CceeCC--CCccccCCHHHHHHHHHHhCCCc
Q psy6546         203 ITYSCP--SCSKSFNRKDRYRMHLKLHQGVR  231 (294)
Q Consensus       203 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~  231 (294)
                      +||.|+  .|+++|..+++|..|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            477884  58888888888888888888763

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.1e-08  Score=49.25  Aligned_cols=26  Identities=27%  Similarity=0.731  Sum_probs=22.2

Q ss_pred             ccccccc--ccccccchhhhhhhhhhcc
Q psy6546         257 RAYVCEL--CARQFTRVDHFNHHRRLQH  282 (294)
Q Consensus       257 ~~~~C~~--C~~~f~~~~~l~~H~~~~h  282 (294)
                      +||+|++  |+++|++.++|..|+++|.
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5888977  9999999999999988874

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=2.3e-08  Score=48.61  Aligned_cols=27  Identities=33%  Similarity=0.941  Sum_probs=21.6

Q ss_pred             CceeCCC--CccccCCHHHHHHHHHHhCC
Q psy6546         203 ITYSCPS--CSKSFNRKDRYRMHLKLHQG  229 (294)
Q Consensus       203 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~  229 (294)
                      +||.|++  |+++|..+++|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            4788866  88888888888888888865

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.48  E-value=9e-09  Score=56.79  Aligned_cols=39  Identities=28%  Similarity=0.501  Sum_probs=30.5

Q ss_pred             HHHhHHhhcCC-CceeCCC--CccccCCHHHHHHHHHHhCCCc
Q psy6546         192 YLRQHQKLHSG-ITYSCPS--CSKSFNRKDRYRMHLKLHQGVR  231 (294)
Q Consensus       192 ~l~~H~~~h~~-~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~  231 (294)
                      .+..|++ |.+ +||.|++  |++.|..+++|..|+++|+|++
T Consensus         6 ~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            4556665 544 5999977  9999999999999999998864

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=8.2e-08  Score=47.84  Aligned_cols=27  Identities=41%  Similarity=0.664  Sum_probs=18.8

Q ss_pred             CceeCCC--CccccCCHHHHHHHHHHhCC
Q psy6546         203 ITYSCPS--CSKSFNRKDRYRMHLKLHQG  229 (294)
Q Consensus       203 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~  229 (294)
                      +||.|++  |+++|..+++|.+|+++|+.
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            4677765  77777777777777777664

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=7.2e-08  Score=42.82  Aligned_cols=26  Identities=38%  Similarity=0.911  Sum_probs=19.9

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhCC
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQG  229 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~~  229 (294)
                      |.+|+.|++.|.++..|..|++.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            45778888888888888888877764

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=6e-08  Score=46.56  Aligned_cols=26  Identities=31%  Similarity=0.738  Sum_probs=17.9

Q ss_pred             CceeCCC--CccccCCHHHHHHHHHHhC
Q psy6546         203 ITYSCPS--CSKSFNRKDRYRMHLKLHQ  228 (294)
Q Consensus       203 ~~~~C~~--C~~~f~~~~~l~~H~~~h~  228 (294)
                      +||.|++  |+++|..+++|.+|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            3667755  7777777777777777664

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.7e-07  Score=41.58  Aligned_cols=26  Identities=31%  Similarity=0.685  Sum_probs=20.7

Q ss_pred             ccccccccccccchhhhhhhhhhccC
Q psy6546         258 AYVCELCARQFTRVDHFNHHRRLQHD  283 (294)
Q Consensus       258 ~~~C~~C~~~f~~~~~l~~H~~~~h~  283 (294)
                      |.+|+.|++.|+.+..|+.|++.|.+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            46788888888888888888888764

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=5e-07  Score=40.80  Aligned_cols=28  Identities=29%  Similarity=0.641  Sum_probs=21.1

Q ss_pred             ccccccccccccccchhhhhhhhhhccC
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQHD  283 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~  283 (294)
                      .+||+|..|+++..+.+.|.+|+|+|.+
T Consensus         1 vkp~kck~cdyaaadsssl~kh~rihs~   28 (28)
T d2dmda1           1 VKPYKCKTCDYAAADSSSLNKHLRIHSD   28 (28)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHSCC
T ss_pred             CCCcccccccchhcchhhHhhhhhcccC
Confidence            3677888888888888888888877753

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=5.5e-07  Score=41.39  Aligned_cols=26  Identities=27%  Similarity=0.879  Sum_probs=20.7

Q ss_pred             ccccccccccccccchhhhhhhhhhc
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQ  281 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~  281 (294)
                      ++||.|.+||+.|....+.++|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            47888888888888888888887776

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=6.4e-07  Score=42.80  Aligned_cols=30  Identities=27%  Similarity=0.665  Sum_probs=24.2

Q ss_pred             ccccccccccccchhhhhhhhhhccCcccc
Q psy6546         258 AYVCELCARQFTRVDHFNHHRRLQHDPEEF  287 (294)
Q Consensus       258 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~  287 (294)
                      ...|..||+.|.+...|.+|..+|.+++||
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            456888888888888888888888888876

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=1.9e-06  Score=39.57  Aligned_cols=26  Identities=31%  Similarity=0.754  Sum_probs=19.6

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhC
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQ  228 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~  228 (294)
                      +||.|++||+.|..+....+|.++|.
T Consensus         2 kPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCcccchhhhhhhcchhhhhhhhhcc
Confidence            57778888888887777777777663

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=2.6e-06  Score=39.67  Aligned_cols=28  Identities=46%  Similarity=0.965  Sum_probs=22.8

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      +||.|++|+..|..+..+..|.++|.|.
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCcccchHHHHhhccccceEeeecccCc
Confidence            5788888888888888888888888763

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.6e-06  Score=39.49  Aligned_cols=29  Identities=17%  Similarity=0.432  Sum_probs=23.9

Q ss_pred             ccccccccccccccchhhhhhhhhhccCc
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      ++||+|-.|.++-.+.++|.-|+++|.++
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            47888888888888888888888888764

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=3.1e-06  Score=38.27  Aligned_cols=25  Identities=20%  Similarity=0.579  Sum_probs=14.6

Q ss_pred             cccccccccccchhhhhhhhhhccC
Q psy6546         259 YVCELCARQFTRVDHFNHHRRLQHD  283 (294)
Q Consensus       259 ~~C~~C~~~f~~~~~l~~H~~~~h~  283 (294)
                      ..|..||++|...+.|++|+..|.+
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccC
Confidence            3456666666666666666655554

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=2.8e-06  Score=39.62  Aligned_cols=27  Identities=30%  Similarity=0.813  Sum_probs=21.3

Q ss_pred             ccccccc--ccccccchhhhhhhhhhccC
Q psy6546         257 RAYVCEL--CARQFTRVDHFNHHRRLQHD  283 (294)
Q Consensus       257 ~~~~C~~--C~~~f~~~~~l~~H~~~~h~  283 (294)
                      +||.|.+  |+++++..+.|.+|++++|+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5787844  88888888888888888775

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=2e-06  Score=39.47  Aligned_cols=28  Identities=18%  Similarity=0.496  Sum_probs=24.8

Q ss_pred             cccccccccccccchhhhhhhhhhccCc
Q psy6546         257 RAYVCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       257 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      +||+|+.|.+...+.++|..|++.-|++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            5899999999999999999999877664

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1e-05  Score=36.98  Aligned_cols=26  Identities=23%  Similarity=0.606  Sum_probs=16.9

Q ss_pred             eeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         205 YSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       205 ~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      |.|++||......+-|++|+++|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            55666666666666666666666654

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=5.7e-06  Score=37.40  Aligned_cols=25  Identities=28%  Similarity=0.683  Sum_probs=16.2

Q ss_pred             eeCCCCccccCCHHHHHHHHHHhCC
Q psy6546         205 YSCPSCSKSFNRKDRYRMHLKLHQG  229 (294)
Q Consensus       205 ~~C~~C~~~f~~~~~l~~H~~~h~~  229 (294)
                      ..|.+||+.|..++.|.+|+..|+|
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccC
Confidence            4566666666666666666666655

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=8.3e-06  Score=37.92  Aligned_cols=29  Identities=24%  Similarity=0.612  Sum_probs=26.6

Q ss_pred             CCCccCccchhccCCHHHHHHHHHHhCCc
Q psy6546          30 PTRHPCPQCSRDFATVKILKTHLKTHEGI   58 (294)
Q Consensus        30 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~   58 (294)
                      .+||.|+.|+..|.....+.-|++.|.+.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            37999999999999999999999999764

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.5e-05  Score=37.15  Aligned_cols=27  Identities=30%  Similarity=0.659  Sum_probs=21.2

Q ss_pred             CceeCCC--CccccCCHHHHHHHHHHhCC
Q psy6546         203 ITYSCPS--CSKSFNRKDRYRMHLKLHQG  229 (294)
Q Consensus       203 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~  229 (294)
                      +||.|.+  |+++++..++|++|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            4788855  88888888888888887664

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=5.1e-06  Score=38.02  Aligned_cols=26  Identities=27%  Similarity=0.595  Sum_probs=15.6

Q ss_pred             cccccccccccchhhhhhhhhhccCc
Q psy6546         259 YVCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       259 ~~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      |.|++|+......+-|.+|+++|.++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            55666666666666666666666553

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1.1e-05  Score=36.63  Aligned_cols=27  Identities=22%  Similarity=0.591  Sum_probs=20.0

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCC
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQG  229 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~  229 (294)
                      +||+|..|.+.-..++.|..|+++|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            477777777777777777777777765

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=4.9e-06  Score=38.24  Aligned_cols=29  Identities=21%  Similarity=0.567  Sum_probs=24.9

Q ss_pred             cccccccccccccchhhhhhhhhhccCcc
Q psy6546         257 RAYVCELCARQFTRVDHFNHHRRLQHDPE  285 (294)
Q Consensus       257 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  285 (294)
                      +||+|.+|.+...+.++|+.|+++.|+++
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            58999999999999999999998888754

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.71  E-value=8.5e-06  Score=35.62  Aligned_cols=23  Identities=35%  Similarity=0.888  Sum_probs=12.5

Q ss_pred             cccccccccccchhhhhhhhhhc
Q psy6546         259 YVCELCARQFTRVDHFNHHRRLQ  281 (294)
Q Consensus       259 ~~C~~C~~~f~~~~~l~~H~~~~  281 (294)
                      |+|..|..+|-.++.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            44555555555555555555544

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=3.3e-05  Score=34.71  Aligned_cols=26  Identities=23%  Similarity=0.608  Sum_probs=15.7

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhC
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQ  228 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~  228 (294)
                      +||+|..|.+....++.|.+|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            35666666666666666666666553

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=2.1e-05  Score=35.91  Aligned_cols=23  Identities=35%  Similarity=0.699  Sum_probs=19.7

Q ss_pred             ceeCCCCccccCCHHHHHHHHHH
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKL  226 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~  226 (294)
                      ||.|..|+.+|..+.+|..||++
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            68888888888888888888875

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.58  E-value=2.1e-05  Score=34.34  Aligned_cols=22  Identities=32%  Similarity=0.694  Sum_probs=10.2

Q ss_pred             eCCCCccccCCHHHHHHHHHHh
Q psy6546         206 SCPSCSKSFNRKDRYRMHLKLH  227 (294)
Q Consensus       206 ~C~~C~~~f~~~~~l~~H~~~h  227 (294)
                      +|..|.++|..++.|.+|++.|
T Consensus         2 kcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           2 KCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             BCSSSCCBCSSHHHHHHHGGGT
T ss_pred             cccchHHHHHHHHHHHHHHHhh
Confidence            4444444444444444444443

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=1.2e-05  Score=36.71  Aligned_cols=24  Identities=21%  Similarity=0.580  Sum_probs=21.2

Q ss_pred             ccccccccccccchhhhhhhhhhc
Q psy6546         258 AYVCELCARQFTRVDHFNHHRRLQ  281 (294)
Q Consensus       258 ~~~C~~C~~~f~~~~~l~~H~~~~  281 (294)
                      ||.|..|.++|.++.+|.+|+++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            788999999999999999998664

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=3e-05  Score=36.93  Aligned_cols=28  Identities=32%  Similarity=0.737  Sum_probs=19.5

Q ss_pred             cccccccccccCHHHHHHHHhhhc-cccc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHD-VRAY  259 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~-~~~~  259 (294)
                      ..|..||+.|.....|.+|...|. ++||
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            457777777777777777777775 6665

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=2.4e-05  Score=36.76  Aligned_cols=27  Identities=26%  Similarity=0.762  Sum_probs=21.9

Q ss_pred             ccccccc--ccccccchhhhhhhh-hhccC
Q psy6546         257 RAYVCEL--CARQFTRVDHFNHHR-RLQHD  283 (294)
Q Consensus       257 ~~~~C~~--C~~~f~~~~~l~~H~-~~~h~  283 (294)
                      +||.|..  |.++|++.+.-.+|+ |+|.+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            5888855  999999999888997 77765

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.41  E-value=8.8e-05  Score=37.31  Aligned_cols=29  Identities=24%  Similarity=0.623  Sum_probs=22.2

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCCc
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGVR  231 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  231 (294)
                      +.|+|.+|++.|.+..+|--|++.|..++
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CccCCCCCCCccCCcccccchHhhhcchH
Confidence            46788888888888888888887776554

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=9.5e-05  Score=33.63  Aligned_cols=28  Identities=25%  Similarity=0.555  Sum_probs=25.5

Q ss_pred             CCCccCccchhccCCHHHHHHHHHHhCC
Q psy6546          30 PTRHPCPQCSRDFATVKILKTHLKTHEG   57 (294)
Q Consensus        30 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~   57 (294)
                      .+.|.|..|...|...-.|+.||..|.+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccC
Confidence            3568999999999999999999999976

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.34  E-value=0.00012  Score=32.41  Aligned_cols=25  Identities=36%  Similarity=0.752  Sum_probs=18.9

Q ss_pred             eCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         206 SCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       206 ~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      +|+.|.+.|.++-.|..|-+.|+|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            5777777777777777777777765

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=0.00019  Score=32.58  Aligned_cols=28  Identities=29%  Similarity=0.777  Sum_probs=24.3

Q ss_pred             CceeCCCCccccCCHHHHHHHHHHhCCC
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      .-|.|..|...|.....|+.|+-+|+|+
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            3588999999999999999999998874

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.18  E-value=0.0001  Score=37.09  Aligned_cols=29  Identities=28%  Similarity=0.678  Sum_probs=25.6

Q ss_pred             CCCCccCccchhccCCHHHHHHHHHHhCC
Q psy6546          29 TPTRHPCPQCSRDFATVKILKTHLKTHEG   57 (294)
Q Consensus        29 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~   57 (294)
                      +++.|.|..|++.|.+-+.|-.||+.|..
T Consensus         2 p~r~~~C~~C~k~F~s~qALGGH~~~Hr~   30 (37)
T d1njqa_           2 PPRSYTCSFCKREFRSAQALGGHMNVHRR   30 (37)
T ss_dssp             CSSSEECTTTCCEESSHHHHHHHHHTTCC
T ss_pred             CCCccCCCCCCCccCCcccccchHhhhcc
Confidence            35679999999999999999999998853

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00021  Score=32.73  Aligned_cols=25  Identities=24%  Similarity=0.537  Sum_probs=16.5

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhC
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQ  228 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~  228 (294)
                      ||+|..|.+....+++|..|+++-+
T Consensus         2 py~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             Cccccccccccccchhhhhhhhccc
Confidence            6666666666666666666666544

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=7.4e-05  Score=33.15  Aligned_cols=25  Identities=20%  Similarity=0.424  Sum_probs=14.2

Q ss_pred             ccccccccccchhhhhhhhhhccCc
Q psy6546         260 VCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       260 ~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      +|+.|.+.|..+..|+-|-+.|.++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            4555555555555555555555554

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.01  E-value=0.00022  Score=33.41  Aligned_cols=22  Identities=32%  Similarity=0.786  Sum_probs=16.1

Q ss_pred             ceeCCCCccccCCHHHHHHHHH
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLK  225 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~  225 (294)
                      ||.|.+|++.|..+.-|.+|+.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~q   22 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQ   22 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT
T ss_pred             CcccccccchhhHHHHHHHHHH
Confidence            5777777777777777777764

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.89  E-value=0.0002  Score=33.56  Aligned_cols=26  Identities=42%  Similarity=0.781  Sum_probs=20.2

Q ss_pred             ccccccccccccchhhhhhhhhhccC
Q psy6546         258 AYVCELCARQFTRVDHFNHHRRLQHD  283 (294)
Q Consensus       258 ~~~C~~C~~~f~~~~~l~~H~~~~h~  283 (294)
                      ||.|.+|++.|+....|.+|+..-|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            68888888888888888888654444

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00057  Score=30.73  Aligned_cols=22  Identities=36%  Similarity=0.649  Sum_probs=15.5

Q ss_pred             ccccccccccCHHHHHHHHhhh
Q psy6546         233 TCKECSKEFSNEYNLKNHMVLH  254 (294)
Q Consensus       233 ~C~~C~~~f~~~~~l~~H~~~h  254 (294)
                      +|+.|.+..+++..|+.|.++|
T Consensus         4 kc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           4 KCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             ECSSSSCEESSHHHHHHHHGGG
T ss_pred             cCcccccccCcHHHHHHhhccc
Confidence            5677777777777777777766

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.52  E-value=0.00096  Score=30.22  Aligned_cols=25  Identities=36%  Similarity=0.692  Sum_probs=22.5

Q ss_pred             CCccCcc--chhccCCHHHHHHHHHHh
Q psy6546          31 TRHPCPQ--CSRDFATVKILKTHLKTH   55 (294)
Q Consensus        31 ~~~~C~~--C~~~f~~~~~l~~H~~~~   55 (294)
                      .||+|+.  |++.|+..+.|++|-++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            5899985  999999999999998876

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0013  Score=33.07  Aligned_cols=23  Identities=30%  Similarity=0.764  Sum_probs=16.5

Q ss_pred             CceeCCCCccccCCHHHHHHHHH
Q psy6546         203 ITYSCPSCSKSFNRKDRYRMHLK  225 (294)
Q Consensus       203 ~~~~C~~C~~~f~~~~~l~~H~~  225 (294)
                      +||.|..|++.|-...++.+|..
T Consensus         4 KPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           4 KPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHH
T ss_pred             CceeccchhhhhhhHHHHHHhhh
Confidence            47777777777777777777753

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.41  E-value=0.0018  Score=29.30  Aligned_cols=24  Identities=42%  Similarity=0.945  Sum_probs=13.6

Q ss_pred             ceeCC--CCccccCCHHHHHHHHHHh
Q psy6546         204 TYSCP--SCSKSFNRKDRYRMHLKLH  227 (294)
Q Consensus       204 ~~~C~--~C~~~f~~~~~l~~H~~~h  227 (294)
                      ||+|+  -|++.|...+.|.+|-+.|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            55553  3666666666666665544

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.00055  Score=32.03  Aligned_cols=24  Identities=33%  Similarity=0.712  Sum_probs=12.9

Q ss_pred             ceeCCC--CccccCCHHHHHHHH-HHh
Q psy6546         204 TYSCPS--CSKSFNRKDRYRMHL-KLH  227 (294)
Q Consensus       204 ~~~C~~--C~~~f~~~~~l~~H~-~~h  227 (294)
                      ||.|..  |++.|...+.-.+|+ ++|
T Consensus         2 PY~C~~~gC~KafsNsSDraKHqnRTH   28 (31)
T d2glia4           2 PYMCEHEGCSKAFSNASDRAKHQNRTH   28 (31)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHHHHTT
T ss_pred             CccccCCChhhhhcchhhhhhhccccc
Confidence            555543  555555555555554 444

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.0016  Score=29.23  Aligned_cols=25  Identities=32%  Similarity=0.602  Sum_probs=21.2

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhC
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQ  228 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~  228 (294)
                      |-+|++|.++..++..|+.|-++|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            5679999999999999999988763

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.002  Score=29.32  Aligned_cols=23  Identities=22%  Similarity=0.486  Sum_probs=15.9

Q ss_pred             ceeCCCCccccCCHHHHHHHHHH
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKL  226 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~  226 (294)
                      ||+|..|..-....++|..|++.
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CcccceecccccCcchHHHHHHH
Confidence            66777777777777777777654

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.31  E-value=0.0006  Score=31.06  Aligned_cols=28  Identities=25%  Similarity=0.638  Sum_probs=20.9

Q ss_pred             ccccc--ccccccccchhhhhhhhhhccCc
Q psy6546         257 RAYVC--ELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       257 ~~~~C--~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      +||.|  .-|.++|.....|.+|..+|.++
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            46666  56888888888888888777653

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.21  E-value=0.0023  Score=27.73  Aligned_cols=22  Identities=36%  Similarity=0.818  Sum_probs=16.0

Q ss_pred             ceeCCCCccccCCHHHHHHHHH
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLK  225 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~  225 (294)
                      ||+|..|...|..+..|+.|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            6777777777777777777763

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0019  Score=32.42  Aligned_cols=25  Identities=16%  Similarity=0.424  Sum_probs=16.4

Q ss_pred             CCCcccCCccCccccChHHHHHHHh
Q psy6546          93 TLTRHPCPQCSRDFATVKILKTHLK  117 (294)
Q Consensus        93 ~~~~~~C~~C~~~f~~~~~l~~H~~  117 (294)
                      +.+||.|..|++.|.-..++.+|..
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhh
Confidence            4466777777777776666666653

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.16  E-value=0.00098  Score=29.72  Aligned_cols=21  Identities=19%  Similarity=0.640  Sum_probs=18.4

Q ss_pred             ccccccccccccchhhhhhhh
Q psy6546         258 AYVCELCARQFTRVDHFNHHR  278 (294)
Q Consensus       258 ~~~C~~C~~~f~~~~~l~~H~  278 (294)
                      ||+|..||+.+-.+.+|..|-
T Consensus         1 pf~c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHH
Confidence            688999999999999998884

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.13  E-value=0.001  Score=28.87  Aligned_cols=21  Identities=29%  Similarity=0.741  Sum_probs=15.0

Q ss_pred             ccccccccccccchhhhhhhh
Q psy6546         258 AYVCELCARQFTRVDHFNHHR  278 (294)
Q Consensus       258 ~~~C~~C~~~f~~~~~l~~H~  278 (294)
                      ||+|+.|...|.++..|..|+
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            677777777777777777765

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.07  E-value=0.0024  Score=28.40  Aligned_cols=21  Identities=33%  Similarity=0.820  Sum_probs=14.5

Q ss_pred             ceeCCCCccccCCHHHHHHHH
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHL  224 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~  224 (294)
                      ||+|..||+.+..+.+|..|-
T Consensus         1 pf~c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHH
Confidence            566777777777777776664

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.67  E-value=0.0019  Score=28.16  Aligned_cols=24  Identities=38%  Similarity=0.915  Sum_probs=17.9

Q ss_pred             cccccccccccchhhhhhhhhhcc
Q psy6546         259 YVCELCARQFTRVDHFNHHRRLQH  282 (294)
Q Consensus       259 ~~C~~C~~~f~~~~~l~~H~~~~h  282 (294)
                      |.|+.|-+.|+.+.++..|.++-|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            668888888888888888776543

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.65  E-value=0.0035  Score=28.46  Aligned_cols=26  Identities=27%  Similarity=0.638  Sum_probs=16.9

Q ss_pred             ceeC--CCCccccCCHHHHHHHHHHhCC
Q psy6546         204 TYSC--PSCSKSFNRKDRYRMHLKLHQG  229 (294)
Q Consensus       204 ~~~C--~~C~~~f~~~~~l~~H~~~h~~  229 (294)
                      ||.|  .-|.+.|.+.-.|.+|..+|+|
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHHHHT
T ss_pred             CcCcccccccccchhhhhhhhhhccccC
Confidence            5556  3366777777777777666665

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0063  Score=31.69  Aligned_cols=25  Identities=32%  Similarity=0.640  Sum_probs=21.4

Q ss_pred             cccccccccccCHHHHHHHHhhhcc
Q psy6546         232 HTCKECSKEFSNEYNLKNHMVLHDV  256 (294)
Q Consensus       232 ~~C~~C~~~f~~~~~l~~H~~~h~~  256 (294)
                      |.|..|++.|.....|+.|..-|..
T Consensus         7 ~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           7 LPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             eeccccccccCCHHHHhHhHHhcCc
Confidence            7899999999999999999888853

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.22  E-value=0.014  Score=25.27  Aligned_cols=22  Identities=50%  Similarity=1.055  Sum_probs=16.2

Q ss_pred             eeCCCCccccCCHHHHHHHHHH
Q psy6546         205 YSCPSCSKSFNRKDRYRMHLKL  226 (294)
Q Consensus       205 ~~C~~C~~~f~~~~~l~~H~~~  226 (294)
                      |.|+.|-+.|+++.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            5677777777777777777765

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.014  Score=28.90  Aligned_cols=26  Identities=27%  Similarity=0.737  Sum_probs=17.4

Q ss_pred             CCceeC--CCCccccCCHHHHHHHHHHh
Q psy6546         202 GITYSC--PSCSKSFNRKDRYRMHLKLH  227 (294)
Q Consensus       202 ~~~~~C--~~C~~~f~~~~~l~~H~~~h  227 (294)
                      .+||.|  +-|+.+|.+...|..|...|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            357777  55777777777777766554

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0095  Score=26.54  Aligned_cols=25  Identities=28%  Similarity=0.611  Sum_probs=22.2

Q ss_pred             CccCccchhccCCHHHHHHHHHHhC
Q psy6546          32 RHPCPQCSRDFATVKILKTHLKTHE   56 (294)
Q Consensus        32 ~~~C~~C~~~f~~~~~l~~H~~~~~   56 (294)
                      .|+||.|+.....+++|+.|++.-+
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccCCcchhheeehhhhhHHhhhcc
Confidence            4899999999999999999997543

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.013  Score=26.11  Aligned_cols=22  Identities=14%  Similarity=0.523  Sum_probs=15.2

Q ss_pred             ccCCCCCcccCCHHHHHHHHHh
Q psy6546         151 YICHACPREFSSEATMKAHVAS  172 (294)
Q Consensus       151 ~~C~~C~~~f~~~~~l~~H~~~  172 (294)
                      |.|+.|+.....+++|+.|++.
T Consensus         3 ~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhhh
Confidence            5677777777777777777665

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.83  E-value=0.013  Score=27.56  Aligned_cols=25  Identities=28%  Similarity=0.611  Sum_probs=22.3

Q ss_pred             CCCCccCccchhccCCHHHHHHHHH
Q psy6546          29 TPTRHPCPQCSRDFATVKILKTHLK   53 (294)
Q Consensus        29 ~~~~~~C~~C~~~f~~~~~l~~H~~   53 (294)
                      .+..|.|+.||..|++.+.|..|+.
T Consensus         5 kparf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           5 KPARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             SCCCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cccceeccccceeecChhHHHhhhh
Confidence            4567999999999999999999975

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.60  E-value=0.014  Score=30.32  Aligned_cols=25  Identities=32%  Similarity=0.604  Sum_probs=21.9

Q ss_pred             ceeCCCCccccCCHHHHHHHHHHhC
Q psy6546         204 TYSCPSCSKSFNRKDRYRMHLKLHQ  228 (294)
Q Consensus       204 ~~~C~~C~~~f~~~~~l~~H~~~h~  228 (294)
                      -|.|..|++.|+....|+.|--.|.
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            5789999999999999999987764

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.015  Score=28.70  Aligned_cols=28  Identities=29%  Similarity=0.591  Sum_probs=24.6

Q ss_pred             CCCCccC--ccchhccCCHHHHHHHHHHhC
Q psy6546          29 TPTRHPC--PQCSRDFATVKILKTHLKTHE   56 (294)
Q Consensus        29 ~~~~~~C--~~C~~~f~~~~~l~~H~~~~~   56 (294)
                      ..+||.|  +-|+..|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            4789999  569999999999999998774

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.49  E-value=0.011  Score=27.84  Aligned_cols=22  Identities=32%  Similarity=0.620  Sum_probs=18.6

Q ss_pred             ccccccccccccCHHHHHHHHh
Q psy6546         231 RHTCKECSKEFSNEYNLKNHMV  252 (294)
Q Consensus       231 ~~~C~~C~~~f~~~~~l~~H~~  252 (294)
                      +|.|..||-.|++.+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            3889999999999999998853

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.022  Score=27.09  Aligned_cols=26  Identities=19%  Similarity=0.570  Sum_probs=21.7

Q ss_pred             cccCCccCccccChHHHHHHHhhccC
Q psy6546          96 RHPCPQCSRDFATVKILKTHLKTHEG  121 (294)
Q Consensus        96 ~~~C~~C~~~f~~~~~l~~H~~~~~~  121 (294)
                      .|.|..|++.|..+..+.+|.....+
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            47899999999999999888877655

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=0.023  Score=25.47  Aligned_cols=19  Identities=26%  Similarity=0.683  Sum_probs=11.5

Q ss_pred             cccccccCHHHHHHHHhhh
Q psy6546         236 ECSKEFSNEYNLKNHMVLH  254 (294)
Q Consensus       236 ~C~~~f~~~~~l~~H~~~h  254 (294)
                      .|++.|.+.+++++|..+|
T Consensus         8 gC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGG
T ss_pred             cHHHHhhchHHHHHHhhcc
Confidence            3566666666666665555

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.034  Score=26.40  Aligned_cols=26  Identities=15%  Similarity=0.493  Sum_probs=22.4

Q ss_pred             CCccCccchhccCCHHHHHHHHHHhC
Q psy6546          31 TRHPCPQCSRDFATVKILKTHLKTHE   56 (294)
Q Consensus        31 ~~~~C~~C~~~f~~~~~l~~H~~~~~   56 (294)
                      ..|.|..|++.|..+..+.+|.....
T Consensus         3 ~afvcskcgktftrrntm~rha~nc~   28 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADNCA   28 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCC
T ss_pred             ceeeecccccchhcchHHHHHhhhcC
Confidence            46899999999999999999986543

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.90  E-value=0.022  Score=25.77  Aligned_cols=26  Identities=19%  Similarity=0.575  Sum_probs=16.2

Q ss_pred             cccccccccccchhhhhhhhhhccCc
Q psy6546         259 YVCELCARQFTRVDHFNHHRRLQHDP  284 (294)
Q Consensus       259 ~~C~~C~~~f~~~~~l~~H~~~~h~~  284 (294)
                      |.|..|++.......++.|+...|+.
T Consensus         3 ftc~hcgkqlks~~gmkyhvmadhn~   28 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMANHNS   28 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             eechhHHHHHhhccCceEEEeecccC
Confidence            55666666666666666666555553

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.74  E-value=0.099  Score=23.54  Aligned_cols=26  Identities=15%  Similarity=0.492  Sum_probs=19.1

Q ss_pred             cccCCccCccccChHHHHHHHhhccC
Q psy6546          96 RHPCPQCSRDFATVKILKTHLKTHEG  121 (294)
Q Consensus        96 ~~~C~~C~~~f~~~~~l~~H~~~~~~  121 (294)
                      .|.|..||+...+...+..|++..+.
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             ceechhHHHHHhhccCceEEEeeccc
Confidence            36788888888888888888765543

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.88  E-value=0.045  Score=26.08  Aligned_cols=28  Identities=29%  Similarity=0.736  Sum_probs=19.3

Q ss_pred             ccccccccccccccchhhhhhhhhhccC
Q psy6546         256 VRAYVCELCARQFTRVDHFNHHRRLQHD  283 (294)
Q Consensus       256 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~  283 (294)
                      ...|+|.+|.+.++-.+++.+|.-+-|.
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             CcEEEeehhhHHHHHHHHHHHHHHhhcc
Confidence            3467778888888777777777544443

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.82  E-value=0.08  Score=25.45  Aligned_cols=19  Identities=26%  Similarity=0.529  Sum_probs=10.9

Q ss_pred             CcccCCHHHHHHHHHhhcC
Q psy6546         157 PREFSSEATMKAHVASHNG  175 (294)
Q Consensus       157 ~~~f~~~~~l~~H~~~~~~  175 (294)
                      ++.|+....|..|++.|++
T Consensus        14 ~~pf~a~YkLv~H~R~HTg   32 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTG   32 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHC
T ss_pred             CCcchhHHHHHHHHhhcCC
Confidence            3445556666666666655

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.56  E-value=0.079  Score=25.48  Aligned_cols=21  Identities=19%  Similarity=0.347  Sum_probs=13.7

Q ss_pred             CccccCCHHHHHHHHHHhCCC
Q psy6546         210 CSKSFNRKDRYRMHLKLHQGV  230 (294)
Q Consensus       210 C~~~f~~~~~l~~H~~~h~~~  230 (294)
                      =++.|.....|..|+++|+|+
T Consensus        13 ~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          13 ELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCcchhHHHHHHHHhhcCCC
Confidence            345566777777777777664

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.13  E-value=0.21  Score=25.71  Aligned_cols=26  Identities=31%  Similarity=0.584  Sum_probs=19.1

Q ss_pred             CCCceeCCCCccccCCHHHHHHHHHH
Q psy6546         201 SGITYSCPSCSKSFNRKDRYRMHLKL  226 (294)
Q Consensus       201 ~~~~~~C~~C~~~f~~~~~l~~H~~~  226 (294)
                      .+.|-.|++|+.....+.+|++|+..
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHH
Confidence            34577788888888888888888754

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.06  E-value=0.071  Score=30.12  Aligned_cols=40  Identities=25%  Similarity=0.478  Sum_probs=27.3

Q ss_pred             CCCCCcccCCccCccccChHHHHHHHhhccCcccCCcccccc
Q psy6546          91 STTLTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKT  132 (294)
Q Consensus        91 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~C~~C~~~  132 (294)
                      ......|.|+.|++.|.....+.  +.......|.|..|+..
T Consensus         9 ~~~~~~y~Cp~C~~~ys~Lda~~--L~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_           9 STNRASFKCPVCSSTFTDLEANQ--LFDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             CCSSSEEECSSSCCEEEHHHHHH--HEETTTTEEBCSSSCCB
T ss_pred             cccCCceECCCCCCCcchhhHHH--hcCcCCCeEEecCCCCE
Confidence            34556789999999998766654  23333346888888754

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.02  E-value=0.32  Score=25.01  Aligned_cols=30  Identities=23%  Similarity=0.466  Sum_probs=25.3

Q ss_pred             CCCCCCCCccCccchhccCCHHHHHHHHHH
Q psy6546          25 TSSTTPTRHPCPQCSRDFATVKILKTHLKT   54 (294)
Q Consensus        25 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~   54 (294)
                      ..+...+|-.|+.|+...+....|++|+..
T Consensus        17 srs~s~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          17 SRSQSEQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             TTTTTSCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccccccCCCCCchHHHHHHHHHHHHHHHHH
Confidence            344566789999999999999999999863

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.46  E-value=0.054  Score=31.20  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=15.2

Q ss_pred             cccccccccccccchhhhhhhhhh
Q psy6546         257 RAYVCELCARQFTRVDHFNHHRRL  280 (294)
Q Consensus       257 ~~~~C~~C~~~f~~~~~l~~H~~~  280 (294)
                      ..|.|..|++-|.+...|..|+++
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CEEecccccCccCCHHHHHHHHcc
Confidence            346666666666666666666544

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=89.43  E-value=0.076  Score=23.92  Aligned_cols=26  Identities=23%  Similarity=0.553  Sum_probs=18.8

Q ss_pred             cccc--ccccccccchhhhhhhhhhccC
Q psy6546         258 AYVC--ELCARQFTRVDHFNHHRRLQHD  283 (294)
Q Consensus       258 ~~~C--~~C~~~f~~~~~l~~H~~~~h~  283 (294)
                      .|.|  ..|+..|+++.++++|...-|+
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnrfhn   29 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNRFHN   29 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHHHTT
T ss_pred             CccccCCCcceEEeehHHHHHHHhhhcc
Confidence            3556  5688888888888888766554

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=89.25  E-value=0.19  Score=22.00  Aligned_cols=18  Identities=28%  Similarity=0.746  Sum_probs=8.4

Q ss_pred             CccccCCHHHHHHHHHHh
Q psy6546         210 CSKSFNRKDRYRMHLKLH  227 (294)
Q Consensus       210 C~~~f~~~~~l~~H~~~h  227 (294)
                      |++.|.....|..|+.+|
T Consensus         9 c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           9 CGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHHHH
T ss_pred             chHHHhhccceEEEeecc
Confidence            444444444444444443

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.11  E-value=0.27  Score=27.31  Aligned_cols=28  Identities=21%  Similarity=0.540  Sum_probs=24.9

Q ss_pred             CCCCccCccchhccCCHHHHHHHHHHhC
Q psy6546          29 TPTRHPCPQCSRDFATVKILKTHLKTHE   56 (294)
Q Consensus        29 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~   56 (294)
                      ....|+|..|...|.+...|..|+..|.
T Consensus        15 ~s~~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          15 QNSTYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCceeeechhHHHHhhHHHHHHHHHhcc
Confidence            3457999999999999999999998884

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.08  E-value=0.057  Score=30.15  Aligned_cols=26  Identities=15%  Similarity=0.558  Sum_probs=20.5

Q ss_pred             cccccccccccccchhhhhhhhhhcc
Q psy6546         257 RAYVCELCARQFTRVDHFNHHRRLQH  282 (294)
Q Consensus       257 ~~~~C~~C~~~f~~~~~l~~H~~~~h  282 (294)
                      ..|+|..|+-.|.....|..|+..|.
T Consensus        17 ~~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          17 STYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             ceeeechhHHHHhhHHHHHHHHHhcc
Confidence            45888888888888888888876654

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=88.96  E-value=0.17  Score=23.17  Aligned_cols=21  Identities=29%  Similarity=0.705  Sum_probs=10.2

Q ss_pred             CCccccCCHHHHHHHHHHhCC
Q psy6546         209 SCSKSFNRKDRYRMHLKLHQG  229 (294)
Q Consensus       209 ~C~~~f~~~~~l~~H~~~h~~  229 (294)
                      .|+..|...-.|..|+-.|+|
T Consensus        10 dC~A~ynk~wkL~AHLckHTG   30 (31)
T d1tf3a1          10 DCGAAYNKNWKLQAHLSKHTG   30 (31)
T ss_dssp             GGCCEESSHHHHHHHHHHHHC
T ss_pred             CcchhhccchhhhHHhhhhcC
Confidence            344555555555555544443

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.36  E-value=0.15  Score=22.79  Aligned_cols=20  Identities=35%  Similarity=0.629  Sum_probs=17.3

Q ss_pred             ccchhccCCHHHHHHHHHHh
Q psy6546          36 PQCSRDFATVKILKTHLKTH   55 (294)
Q Consensus        36 ~~C~~~f~~~~~l~~H~~~~   55 (294)
                      +-||+.|+.++.|..|.+..
T Consensus         6 ~gc~kifsnrqylnhh~kyq   25 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKYQ   25 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHHG
T ss_pred             CCchhhhccHHHHHhHHHHH
Confidence            35999999999999998754

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.10  E-value=0.072  Score=30.67  Aligned_cols=26  Identities=35%  Similarity=0.567  Sum_probs=22.0

Q ss_pred             CCCcccCCccCccccChHHHHHHHhh
Q psy6546          93 TLTRHPCPQCSRDFATVKILKTHLKT  118 (294)
Q Consensus        93 ~~~~~~C~~C~~~f~~~~~l~~H~~~  118 (294)
                      +...|.|..|++.|.+...|..|+++
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCEEecccccCccCCHHHHHHHHcc
Confidence            45668999999999999999999755

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.94  E-value=0.19  Score=28.31  Aligned_cols=41  Identities=20%  Similarity=0.395  Sum_probs=28.5

Q ss_pred             CCCCCccCccchhccCCHHHHHHHHHHhCCcccCCccCccchh
Q psy6546          28 TTPTRHPCPQCSRDFATVKILKTHLKTHEGIIYPCPECDKTFL   70 (294)
Q Consensus        28 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~c~~c~~~~~   70 (294)
                      .....|.||.|++.|+....+..  .......|.|..|+....
T Consensus        10 ~~~~~y~Cp~C~~~ys~Lda~~L--~d~~~~~F~C~~C~~el~   50 (62)
T d1vd4a_          10 TNRASFKCPVCSSTFTDLEANQL--FDPMTGTFRCTFCHTEVE   50 (62)
T ss_dssp             CSSSEEECSSSCCEEEHHHHHHH--EETTTTEEBCSSSCCBCE
T ss_pred             ccCCceECCCCCCCcchhhHHHh--cCcCCCeEEecCCCCEEe
Confidence            34557999999999997766552  223334788999976553

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=84.46  E-value=0.31  Score=23.11  Aligned_cols=27  Identities=22%  Similarity=0.404  Sum_probs=23.4

Q ss_pred             CCCccCccchhccCCHHHHHHHHHHhC
Q psy6546          30 PTRHPCPQCSRDFATVKILKTHLKTHE   56 (294)
Q Consensus        30 ~~~~~C~~C~~~f~~~~~l~~H~~~~~   56 (294)
                      +..|+|..|.+.|...+.+-+|...-+
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             CcEEEeehhhHHHHHHHHHHHHHHhhc
Confidence            457999999999999999999987544

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.66  E-value=0.36  Score=23.09  Aligned_cols=22  Identities=18%  Similarity=0.366  Sum_probs=14.6

Q ss_pred             eeCCCCccccCCHHHHHHHHHH
Q psy6546         205 YSCPSCSKSFNRKDRYRMHLKL  226 (294)
Q Consensus       205 ~~C~~C~~~f~~~~~l~~H~~~  226 (294)
                      ..|.+|.+.|.++-.+.+|+..
T Consensus         4 ltclecmrtfkssfsiwrhqve   25 (41)
T d1wjpa3           4 LTCLECMRTFKSSFSIWRHQVE   25 (41)
T ss_dssp             GEEGGGTEECSSHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhhhe
Confidence            4566777777777777777644

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.48  E-value=1  Score=29.12  Aligned_cols=31  Identities=26%  Similarity=0.415  Sum_probs=26.5

Q ss_pred             CCCCCccCccchhccCCHHHHHHHHHHhCCc
Q psy6546          28 TTPTRHPCPQCSRDFATVKILKTHLKTHEGI   58 (294)
Q Consensus        28 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~   58 (294)
                      ....+..|-+|...|.+...+..||+..|+.
T Consensus        11 ~e~~~~~CLFCd~~f~s~~~~l~H~k~~H~F   41 (121)
T d1wira_          11 HGRQHTPCLFCDRLFASAEETFSHCKLEHQF   41 (121)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHHHHSSCC
T ss_pred             CCcccceecccCCccCCHHHHHHHHHHhhCC
Confidence            3455788999999999999999999987763