Psyllid ID: psy6569

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAGKIANNPFGNKGGAAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGMNPGMMGMRPMMGGMGGMGPMMAMGPMGPMGPMRPPMMQDHPQRK
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcccccEEcccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mpkyycdycdtylthdspsvrkthcqgrkhkdnVKFYYQKWMEEQAQNLIDATTAAYKAgkiannpfgnkggaaipppsnlsslmpprqvgpppgmqqgpppgmmpgmmppgmnmmmmgmnpgmmgmrpmmggmggmgpmmamgpmgpmgpmrppmmqdhpqrk
Flexible Loop (DISEMBL)
mpkyycdycdtylthdspsvrkthcqgrkhkDNVKFYYQKWMEEQAQNLIDATTAAYKAGKIANNPFGNKGGAAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGMNPGMMGMRPMMGGMGGMGPMMAMGPMGPMGPMRPPMMQDHPQRK
Low Complexity Region (SEG)
MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAGKIANNPFGNKGGAAIpppsnlsslmpprqvgpppgmqqgpppgmmpgmmppgmnmmmmgmnpgmmgmrpmmggmggmgpmmamgpmgpmgpmrppmmQDHPQRK
Disordered region (IsUnstruct)
***YYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAGKIA*****************************************************************************************************
Disordered Region (DISOPRED)
MPKYYCDYCDTYLTHDSPSVRKT*CQGRKHKDNVKFYYQKWMEEQ***********************************************************************************************************************
Disordered Region (DISEMBL)
MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAGKIANNPFGNKGGAAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGMNPGMMGMRPMMGGMGGMGPMMAMGPMGPMGPMRPPMMQDHPQRK
Disordered Region (DISPRO)
*PKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAGKIANNPFGNKGGAAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGMNPGMMGMRPMMGGMGGMGPMMAMGPMGPMGPMRPPM********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAGKIANNPFGNKGGAAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGMNPGMMGMRPMMGGMGGMGPMMAMGPMGPMGPMRPPMMQDHPQRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
E0VI98	173	U1 small nuclear ribonucl	N/A	N/A	0.487	0.462	0.901	6e-38
E3X5D6	151	U1 small nuclear ribonucl	N/A	N/A	0.652	0.708	0.694	1e-37
Q7PXU6	152	U1 small nuclear ribonucl	yes	N/A	0.652	0.703	0.702	1e-37
Q16IW3	154	U1 small nuclear ribonucl	N/A	N/A	0.579	0.616	0.712	1e-35
Q298E0	146	U1 small nuclear ribonucl	yes	N/A	0.542	0.609	0.769	2e-35
B7Q2M2	150	U1 small nuclear ribonucl	N/A	N/A	0.481	0.526	0.802	6e-34
C3Z1P5	221	U1 small nuclear ribonucl	yes	N/A	0.506	0.375	0.711	2e-33
Q9VE17	145	U1 small nuclear ribonucl	yes	N/A	0.396	0.448	0.923	2e-32
B0JYS7	159	U1 small nuclear ribonucl	yes	N/A	0.378	0.389	0.854	6e-28
Q03369	159	U1 small nuclear ribonucl	N/A	N/A	0.378	0.389	0.854	6e-28

>sp|E0VI98|RU1C_PEDHC U1 small nuclear ribonucleoprotein C OS=Pediculus humanus subsp. corporis GN=PHUM222080 PE=3 SV=1

 Score =  156 bits (394), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 77/81 (95%), Gaps = 1/81 (1%)

Query: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
          MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQ+LIDATTAA+KAG
Sbjct: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 60

Query: 61 KIANNPFGNKGGAAIPPPSNL 81
          KIA NPF  K GAAIPPP+N+
Sbjct: 61 KIA-NPFAPKPGAAIPPPANM 80

Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
Pediculus humanus subsp. corporis (taxid: 121224)

>sp|E3X5D6|RU1C_ANODA U1 small nuclear ribonucleoprotein C OS=Anopheles darlingi GN=AND_14095 PE=3 SV=1

 Score =  155 bits (392), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/121 (69%), Positives = 90/121 (74%), Gaps = 14/121 (11%)

Query: 1   MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
           MPKYYCDYCDTYLTHDSPSVRKTHC GRKHKDNVKFYYQKWMEEQAQ+LIDATTAAYKAG
Sbjct: 1   MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAYKAG 60

Query: 61  KIANNPFGNKGGAAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGM 120
           KIA NPF      A PP  N+S         PPP M   P PG++PG MP G   ++MG 
Sbjct: 61  KIAQNPF-----TAGPPKPNISI--------PPPTMNMPPRPGIIPG-MPAGAPPLLMGP 106

Query: 121 N 121
           N
Sbjct: 107 N 107

Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.

Anopheles darlingi (taxid: 43151)

>sp|Q7PXU6|RU1C_ANOGA U1 small nuclear ribonucleoprotein C OS=Anopheles gambiae GN=AGAP001584 PE=2 SV=2

 Score =  155 bits (391), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/121 (70%), Positives = 90/121 (74%), Gaps = 14/121 (11%)

Query: 1   MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
           MPKYYCDYCDTYLTHDSPSVRKTHC GRKHKDNVKFYYQKWMEEQAQ+LIDATTAAYKAG
Sbjct: 1   MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAYKAG 60

Query: 61  KIANNPFGNKGGAAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGM 120
           KIA NPF      A PP  N+S         PPP M   P PGM+PG MP G   ++MG 
Sbjct: 61  KIAPNPF-----TAGPPKPNISI--------PPPTMNMPPRPGMIPG-MPAGAPPLLMGP 106

Query: 121 N 121
           N
Sbjct: 107 N 107

Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.

Anopheles gambiae (taxid: 7165)

>sp|Q16IW3|RU1C_AEDAE U1 small nuclear ribonucleoprotein C OS=Aedes aegypti GN=AAEL013527 PE=3 SV=1

 Score =  149 bits (375), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 77/108 (71%), Positives = 83/108 (76%), Gaps = 13/108 (12%)

Query: 1   MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
           MPKYYCDYCDTYLTHDSPSVRKTHC GRKHKDNVKFYYQKWMEEQAQ+LIDATTAA+KAG
Sbjct: 1   MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 60

Query: 61  KIANNPFGNKGGAAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGM 108
           KIA NPF     +A PP  N++         PPP M     PGM+PGM
Sbjct: 61  KIAQNPF-----SAGPPKPNVAI--------PPPSMGMPARPGMIPGM 95

Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.

Aedes aegypti (taxid: 7159)

>sp|Q298E0|RU1C_DROPS U1 small nuclear ribonucleoprotein C OS=Drosophila pseudoobscura pseudoobscura GN=snRNP-U1-C PE=3 SV=1

 Score =  147 bits (372), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/91 (76%), Positives = 77/91 (84%), Gaps = 2/91 (2%)

Query: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
          MPKYYCDYCDTYLTHDSPSVRKTHC GRKH+DNVKFYYQKWMEEQAQ+LIDATTAA+KAG
Sbjct: 1  MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHRDNVKFYYQKWMEEQAQHLIDATTAAFKAG 60

Query: 61 KIANNPFGNKGGAAIPPPSNLSSLMPPRQVG 91
          KI NNPF     +A P PS +S  +PP  +G
Sbjct: 61 KITNNPFAGGPSSAPPKPSGVS--IPPPNMG 89

Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B7Q2M2|RU1C_IXOSC U1 small nuclear ribonucleoprotein C OS=Ixodes scapularis GN=ISCW020627 PE=3 SV=1

 Score =  143 bits (360), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 65/81 (80%), Positives = 72/81 (88%), Gaps = 2/81 (2%)

Query: 3  KYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAGKI 62
          +YYCDYCDTYLTHDSPSVRKTHC GRKHK+NVKFYYQKWMEEQAQNLIDATTAA+KAGKI
Sbjct: 11 RYYCDYCDTYLTHDSPSVRKTHCNGRKHKENVKFYYQKWMEEQAQNLIDATTAAFKAGKI 70

Query: 63 ANNPFGNK--GGAAIPPPSNL 81
           ++ + NK   GA IPPP+ L
Sbjct: 71 QSSQYQNKPISGAMIPPPAAL 91

Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.

Ixodes scapularis (taxid: 6945)

>sp|C3Z1P5|RU1C_BRAFL U1 small nuclear ribonucleoprotein C OS=Branchiostoma floridae GN=BRAFLDRAFT_69314 PE=3 SV=1

 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 73/90 (81%), Gaps = 7/90 (7%)

Query: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
          MPKY+CDYCDTYLTHDSPSVRKTHC GRKHK+NV+ YYQKWMEEQAQ LID TTAA++AG
Sbjct: 1  MPKYFCDYCDTYLTHDSPSVRKTHCNGRKHKENVRVYYQKWMEEQAQQLIDQTTAAFQAG 60

Query: 61 KIANNPF-------GNKGGAAIPPPSNLSS 83
          KI NNPF       GN+ GA + PP+ L +
Sbjct: 61 KIPNNPFPNAAGQVGNEPGAKVLPPAILQA 90

Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.

Branchiostoma floridae (taxid: 7739)

>sp|Q9VE17|RU1C_DROME U1 small nuclear ribonucleoprotein C OS=Drosophila melanogaster GN=snRNP-U1-C PE=1 SV=1

 Score =  137 bits (346), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 60/65 (92%), Positives = 63/65 (96%)

Query: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
          MPKYYCDYCDTYLTHDSPSVRKTHC GRKH+DNVKFYYQKWMEEQAQ+LIDATTAA+KAG
Sbjct: 1  MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHRDNVKFYYQKWMEEQAQHLIDATTAAFKAG 60

Query: 61 KIANN 65
          KI NN
Sbjct: 61 KITNN 65

Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region (By similarity). Regulates alternative splicing of a distinct group of target genes.

Drosophila melanogaster (taxid: 7227)

>sp|B0JYS7|RU1C_XENTR U1 small nuclear ribonucleoprotein C OS=Xenopus tropicalis GN=snrpc PE=2 SV=1

 Score =  123 bits (308), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 53/62 (85%), Positives = 58/62 (93%)

Query: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
          MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1  MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60

Query: 61 KI 62
          KI
Sbjct: 61 KI 62

Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.

Xenopus tropicalis (taxid: 8364)

>sp|Q03369|RU1C_XENLA U1 small nuclear ribonucleoprotein C OS=Xenopus laevis GN=snrpc PE=2 SV=1

 Score =  123 bits (308), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 53/62 (85%), Positives = 58/62 (93%)

Query: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
          MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1  MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60

Query: 61 KI 62
          KI
Sbjct: 61 KI 62

Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
307189202	175	U1 small nuclear ribonucleoprotein C [Ca	0.536	0.502	0.829	5e-38
332017058	175	U1 small nuclear ribonucleoprotein C [Ac	0.536	0.502	0.829	9e-38
307206317	175	U1 small nuclear ribonucleoprotein C [Ha	0.542	0.508	0.820	1e-37
189234617	153	PREDICTED: similar to CG5454 CG5454-PA [	0.512	0.549	0.847	9e-37
242010156	173	U1 small nuclear ribonucleoprotein C, pu	0.487	0.462	0.901	3e-36
19577373	151	putative sRNP [Anopheles gambiae]	0.646	0.701	0.702	4e-36
170070053	145	U1 small nuclear ribonucleoprotein C [Cu	0.652	0.737	0.682	5e-36
363805511	151	RecName: Full=U1 small nuclear ribonucle	0.652	0.708	0.694	5e-36
58395833	152	AGAP001584-PA [Anopheles gambiae str. PE	0.652	0.703	0.702	7e-36
357625180	167	hypothetical protein KGM_20795 [Danaus p	0.512	0.502	0.845	3e-35

>gi|307189202|gb|EFN73650.1| U1 small nuclear ribonucleoprotein C [Camponotus floridanus]

 Score =  162 bits (410), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 73/88 (82%), Positives = 79/88 (89%)

Query: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
          MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVK++YQKWMEEQAQ+LIDATTAA+KAG
Sbjct: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKYFYQKWMEEQAQHLIDATTAAFKAG 60

Query: 61 KIANNPFGNKGGAAIPPPSNLSSLMPPR 88
          KIA+NPF    GAAIPPP NL S +  R
Sbjct: 61 KIASNPFAANKGAAIPPPPNLGSSLGSR 88

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017058|gb|EGI57857.1| U1 small nuclear ribonucleoprotein C [Acromyrmex echinatior]

 Score =  161 bits (407), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 73/88 (82%), Positives = 79/88 (89%)

Query: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
          MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVK++YQKWMEEQAQ+LIDATTAA+KAG
Sbjct: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKYFYQKWMEEQAQHLIDATTAAFKAG 60

Query: 61 KIANNPFGNKGGAAIPPPSNLSSLMPPR 88
          KIA+NPF    GAAIPPP NL S +  R
Sbjct: 61 KIASNPFAANKGAAIPPPPNLGSNLGSR 88

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206317|gb|EFN84374.1| U1 small nuclear ribonucleoprotein C [Harpegnathos saltator]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/89 (82%), Positives = 79/89 (88%)

Query: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
          MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVK++YQKWMEEQAQ+LIDATTAA+KAG
Sbjct: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKYFYQKWMEEQAQHLIDATTAAFKAG 60

Query: 61 KIANNPFGNKGGAAIPPPSNLSSLMPPRQ 89
          KIA+NPF    GAAIPPP NL S +  R 
Sbjct: 61 KIASNPFAANKGAAIPPPPNLGSSLGSRS 89

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234617|ref|XP_975233.2| PREDICTED: similar to CG5454 CG5454-PA [Tribolium castaneum] gi|270001649|gb|EEZ98096.1| hypothetical protein TcasGA2_TC000509 [Tribolium castaneum]

 Score =  158 bits (399), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 72/85 (84%), Positives = 78/85 (91%), Gaps = 1/85 (1%)

Query: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
          MPKYYCDYCDTYLTHDSPSVRKTHC GRKHKDNVKFYYQKWMEEQAQ+LIDATTAA+KAG
Sbjct: 1  MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 60

Query: 61 KIANNPFGNKG-GAAIPPPSNLSSL 84
          KIANNPF   G G AIPPP+ L+++
Sbjct: 61 KIANNPFAQPGKGVAIPPPAQLTAM 85

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010156|ref|XP_002425842.1| U1 small nuclear ribonucleoprotein C, putative [Pediculus humanus corporis] gi|363805525|sp|E0VI98.1|RU1C_PEDHC RecName: Full=U1 small nuclear ribonucleoprotein C; Short=U1 snRNP C; Short=U1-C; Short=U1C gi|212509775|gb|EEB13104.1| U1 small nuclear ribonucleoprotein C, putative [Pediculus humanus corporis]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 77/81 (95%), Gaps = 1/81 (1%)

Query: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
          MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQ+LIDATTAA+KAG
Sbjct: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 60

Query: 61 KIANNPFGNKGGAAIPPPSNL 81
          KIA NPF  K GAAIPPP+N+
Sbjct: 61 KIA-NPFAPKPGAAIPPPANM 80

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19577373|emb|CAD27755.1| putative sRNP [Anopheles gambiae]

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 85/121 (70%), Positives = 90/121 (74%), Gaps = 15/121 (12%)

Query: 1   MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
           MPKYYCDYCDTYLTHDSPSVRKTHC GRKHKDNVKFYYQKWMEEQAQ+LIDATTAAYKAG
Sbjct: 1   MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAYKAG 60

Query: 61  KIANNPFGNKGGAAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGM 120
           KIA NPF      A PP  N+S         PPP M   P PGM+PGM  PG   ++MG 
Sbjct: 61  KIAPNPF-----TAGPPKPNISI--------PPPTMNMPPRPGMIPGM--PGAPPLLMGP 105

Query: 121 N 121
           N
Sbjct: 106 N 106

Source: Anopheles gambiae

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170070053|ref|XP_001869448.1| U1 small nuclear ribonucleoprotein C [Culex quinquefasciatus] gi|167865897|gb|EDS29280.1| U1 small nuclear ribonucleoprotein C [Culex quinquefasciatus]

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 84/123 (68%), Positives = 90/123 (73%), Gaps = 16/123 (13%)

Query: 1   MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
           MPKYYCDYCDTYLTHDSPSVRKTHC GRKHKDNVKFYYQKWME+QAQ+LIDATTAA+KAG
Sbjct: 1   MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEQQAQHLIDATTAAFKAG 60

Query: 61  KIANNPFGNKGGAAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGM 120
           KI  NPF      A PP  N++         PPPGM     PGMMPGM  P    +MMG 
Sbjct: 61  KIQQNPF-----TAGPPKPNVTI--------PPPGMGMAARPGMMPGMQQPP---LMMGA 104

Query: 121 NPG 123
           NPG
Sbjct: 105 NPG 107

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|363805511|sp|E3X5D6.1|RU1C_ANODA RecName: Full=U1 small nuclear ribonucleoprotein C; Short=U1 snRNP C; Short=U1-C; Short=U1C gi|312375503|gb|EFR22865.1| hypothetical protein AND_14095 [Anopheles darlingi]

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 84/121 (69%), Positives = 90/121 (74%), Gaps = 14/121 (11%)

Query: 1   MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
           MPKYYCDYCDTYLTHDSPSVRKTHC GRKHKDNVKFYYQKWMEEQAQ+LIDATTAAYKAG
Sbjct: 1   MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAYKAG 60

Query: 61  KIANNPFGNKGGAAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGM 120
           KIA NPF      A PP  N+S         PPP M   P PG++PG MP G   ++MG 
Sbjct: 61  KIAQNPF-----TAGPPKPNISI--------PPPTMNMPPRPGIIPG-MPAGAPPLLMGP 106

Query: 121 N 121
           N
Sbjct: 107 N 107

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58395833|ref|XP_321527.2| AGAP001584-PA [Anopheles gambiae str. PEST] gi|122064007|sp|Q7PXU6.2|RU1C_ANOGA RecName: Full=U1 small nuclear ribonucleoprotein C; Short=U1 snRNP C; Short=U1-C; Short=U1C gi|55233767|gb|EAA00983.2| AGAP001584-PA [Anopheles gambiae str. PEST]

 Score =  155 bits (391), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 85/121 (70%), Positives = 90/121 (74%), Gaps = 14/121 (11%)

Query: 1   MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
           MPKYYCDYCDTYLTHDSPSVRKTHC GRKHKDNVKFYYQKWMEEQAQ+LIDATTAAYKAG
Sbjct: 1   MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAYKAG 60

Query: 61  KIANNPFGNKGGAAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGM 120
           KIA NPF      A PP  N+S         PPP M   P PGM+PG MP G   ++MG 
Sbjct: 61  KIAPNPF-----TAGPPKPNISI--------PPPTMNMPPRPGMIPG-MPAGAPPLLMGP 106

Query: 121 N 121
           N
Sbjct: 107 N 107

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357625180|gb|EHJ75707.1| hypothetical protein KGM_20795 [Danaus plexippus]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/84 (84%), Positives = 75/84 (89%)

Query: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
          MPKYYCDYCDTYLTHDSPSVRKTHC GRKHKDNVKFYYQKWMEEQAQ+LIDATTAA+KAG
Sbjct: 1  MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 60

Query: 61 KIANNPFGNKGGAAIPPPSNLSSL 84
          KIA NPFG   GA IPPP + S +
Sbjct: 61 KIAQNPFGGPKGANIPPPWDPSVM 84

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
FB|FBgn0261792	145	snRNP-U1-C "small ribonucleopr	0.445	0.503	0.891	3.6e-34
UNIPROTKB|E1C6F0	159	SNRPC "U1 small nuclear ribonu	0.457	0.471	0.766	5.6e-29
UNIPROTKB|Q32PA0	159	SNRPC "U1 small nuclear ribonu	0.408	0.421	0.820	1.9e-28
UNIPROTKB|E2RGI3	159	SNRPC "U1 small nuclear ribonu	0.408	0.421	0.820	1.9e-28
UNIPROTKB|K9J6N9	127	K9J6N9 "Uncharacterized protei	0.408	0.527	0.820	1.9e-28
UNIPROTKB|P09234	159	SNRPC "U1 small nuclear ribonu	0.408	0.421	0.820	1.9e-28
UNIPROTKB|F1RZ16	159	SNRPC "Uncharacterized protein	0.408	0.421	0.820	1.9e-28
MGI|MGI:109489	159	Snrpc "U1 small nuclear ribonu	0.408	0.421	0.820	3.1e-28
RGD|1306065	159	Snrpc "small nuclear ribonucle	0.408	0.421	0.820	3.1e-28
RGD|1588146	159	LOC682020 "similar to U1 small	0.408	0.421	0.820	3.1e-28

FB|FBgn0261792 snRNP-U1-C "small ribonucleoprotein particle U1 subunit C" [Drosophila melanogaster (taxid:7227)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 66/74 (89%), Positives = 69/74 (93%)

Query:     1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
             MPKYYCDYCDTYLTHDSPSVRKTHC GRKH+DNVKFYYQKWMEEQAQ+LIDATTAA+KAG
Sbjct:     1 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHRDNVKFYYQKWMEEQAQHLIDATTAAFKAG 60

Query:    61 KIANNPF-GNKGGA 73
             KI NNPF G  GGA
Sbjct:    61 KITNNPFAGGPGGA 74

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=IDA

GO:0005634 "nucleus" evidence=IC;IDA

GO:0003729 "mRNA binding" evidence=ISS

GO:0005692 "U11 snRNP" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

GO:0005685 "U1 snRNP" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|E1C6F0 SNRPC "U1 small nuclear ribonucleoprotein C" [Gallus gallus (taxid:9031)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 59/77 (76%), Positives = 64/77 (83%)

Query:     1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
             MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct:     1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60

Query:    61 KIANNPFGNK--GGAAI 75
             KI   PF     GGA I
Sbjct:    61 KIPPTPFSAPPPGGAMI 77

GO:0000387 "spliceosomal snRNP assembly" evidence=IEA

GO:0003727 "single-stranded RNA binding" evidence=IEA

GO:0005685 "U1 snRNP" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

UNIPROTKB|Q32PA0 SNRPC "U1 small nuclear ribonucleoprotein C" [Bos taurus (taxid:9913)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 55/67 (82%), Positives = 60/67 (89%)

Query:     1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
             MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct:     1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60

Query:    61 KIANNPF 67
             KI   PF
Sbjct:    61 KIPPTPF 67

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005685 "U1 snRNP" evidence=IEA

GO:0003727 "single-stranded RNA binding" evidence=IEA

GO:0000387 "spliceosomal snRNP assembly" evidence=IEA

UNIPROTKB|E2RGI3 SNRPC "U1 small nuclear ribonucleoprotein C" [Canis lupus familiaris (taxid:9615)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 55/67 (82%), Positives = 60/67 (89%)

Query:     1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
             MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct:     1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60

Query:    61 KIANNPF 67
             KI   PF
Sbjct:    61 KIPPTPF 67

GO:0003723 "RNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005685 "U1 snRNP" evidence=IEA

UNIPROTKB|K9J6N9 K9J6N9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 55/67 (82%), Positives = 60/67 (89%)

Query:     1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
             MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct:    10 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 69

Query:    61 KIANNPF 67
             KI   PF
Sbjct:    70 KIPPTPF 76

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|P09234 SNRPC "U1 small nuclear ribonucleoprotein C" [Homo sapiens (taxid:9606)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 55/67 (82%), Positives = 60/67 (89%)

Query:     1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
             MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct:     1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60

Query:    61 KIANNPF 67
             KI   PF
Sbjct:    61 KIPPTPF 67

GO:0005685 "U1 snRNP" evidence=IDA

GO:0003727 "single-stranded RNA binding" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0030619 "U1 snRNA binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0000387 "spliceosomal snRNP assembly" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0015030 "Cajal body" evidence=IDA

UNIPROTKB|F1RZ16 SNRPC "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 55/67 (82%), Positives = 60/67 (89%)

Query:     1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
             MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct:     1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60

Query:    61 KIANNPF 67
             KI   PF
Sbjct:    61 KIPPTPF 67

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005685 "U1 snRNP" evidence=IEA

GO:0003727 "single-stranded RNA binding" evidence=IEA

GO:0000387 "spliceosomal snRNP assembly" evidence=IEA

MGI|MGI:109489 Snrpc "U1 small nuclear ribonucleoprotein C" [Mus musculus (taxid:10090)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 55/67 (82%), Positives = 60/67 (89%)

Query:     1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
             MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct:     1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60

Query:    61 KIANNPF 67
             KI   PF
Sbjct:    61 KIPPAPF 67

GO:0000387 "spliceosomal snRNP assembly" evidence=ISO

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003727 "single-stranded RNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005685 "U1 snRNP" evidence=ISO

GO:0008270 "zinc ion binding" evidence=ISO

GO:0015030 "Cajal body" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

RGD|1306065 Snrpc "small nuclear ribonucleoprotein polypeptide C" [Rattus norvegicus (taxid:10116)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 55/67 (82%), Positives = 60/67 (89%)

Query:     1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
             MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct:     1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60

Query:    61 KIANNPF 67
             KI   PF
Sbjct:    61 KIPPAPF 67

GO:0000387 "spliceosomal snRNP assembly" evidence=ISO

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003727 "single-stranded RNA binding" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005685 "U1 snRNP" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=ISO

GO:0015030 "Cajal body" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0030619 "U1 snRNA binding" evidence=ISO

RGD|1588146 LOC682020 "similar to U1 small nuclear ribonucleoprotein C (U1 snRNP protein C) (U1C protein) (U1-C)" [Rattus norvegicus (taxid:10116)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 55/67 (82%), Positives = 60/67 (89%)

Query:     1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
             MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct:     1 MPKFYCDYCDTYLTHDSPSVRKTHCNGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60

Query:    61 KIANNPF 67
             KI   PF
Sbjct:    61 KIPPAPF 67

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1RLC9	RU1C_CIOIN	No assigned EC number	0.8125	0.3902	0.5245	yes	N/A
Q5BBX9	RU1C_EMENI	No assigned EC number	0.5671	0.4024	0.2796	yes	N/A
E0VI98	RU1C_PEDHC	No assigned EC number	0.9012	0.4878	0.4624	N/A	N/A
Q298E0	RU1C_DROPS	No assigned EC number	0.7692	0.5426	0.6095	yes	N/A
Q9VE17	RU1C_DROME	No assigned EC number	0.9230	0.3963	0.4482	yes	N/A
Q7PXU6	RU1C_ANOGA	No assigned EC number	0.7024	0.6524	0.7039	yes	N/A
C3Z1P5	RU1C_BRAFL	No assigned EC number	0.7111	0.5060	0.3755	yes	N/A
P90815	RU1C_CAEEL	No assigned EC number	0.6282	0.4695	0.5422	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	164
pfam06220	38	pfam06220, zf-U1, U1 zinc finger	5e-22
COG5136	188	COG5136, COG5136, U1 snRNP-specific protein C [RNA	6e-14
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	3e-10
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-05
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	3e-04
pfam12171	27	pfam12171, zf-C2H2_jaz, Zinc-finger double-strande	4e-04

>gnl|CDD|114912 pfam06220, zf-U1, U1 zinc finger

 Score = 82.9 bits (205), Expect = 5e-22
 Identities = 33/38 (86%), Positives = 34/38 (89%)

Query: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYY 38
          MPKYYCDYCD YLTHDSPSVRK+H  GRKHKDNVK YY
Sbjct: 1  MPKYYCDYCDCYLTHDSPSVRKSHNGGRKHKDNVKDYY 38

This family consists of several U1 small nuclear ribonucleoprotein C (U1-C) proteins. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site (ss) at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' ss is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' ss. Binding of TIA-1 in the vicinity of a 5' ss helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator. This domain is probably a zinc-binding. It is found in multiple copies in some members of the family. Length = 38

>gnl|CDD|227465 COG5136, COG5136, U1 snRNP-specific protein C [RNA processing and modification]

 Score = 65.9 bits (160), Expect = 6e-14
 Identities = 37/98 (37%), Positives = 43/98 (43%), Gaps = 8/98 (8%)

Query: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYY----QKWMEEQAQNLIDATTAA 56
          MP+Y+C+YC+  LTHD  SVRK HC G KH    K YY    +    E A  L D  TA 
Sbjct: 1  MPRYFCEYCNKMLTHDRLSVRKMHCGGAKHGLMRKDYYMEMAEDIAAEMASILRDIKTAG 60

Query: 57 YKAGKIANNPFGNKGGAAIPPPSNLSSLMPPRQVGPPP 94
           K     N         A PP     +L  P     PP
Sbjct: 61 EKVECEGNKSTSYPPFPAFPPGDFYLNLALP----EPP 94

Length = 188

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 52.3 bits (126), Expect = 3e-10
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVK 35
             +YC  C+   T D  SV   H +G+KHK NVK
Sbjct: 1  TGGFYCKLCNVTFT-DEISVE-AHLKGKKHKKNVK 33

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 18/79 (22%), Positives = 22/79 (27%), Gaps = 2/79 (2%)

Query: 84  LMPPRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGMNPGMMGMRPMMGGMGGMGPMMAM 143
           L  P Q   P GM   P     P   PP           G          +       A 
Sbjct: 172 LPQPPQQVLPQGMP--PRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQ 229

Query: 144 GPMGPMGPMRPPMMQDHPQ 162
            P+ P  P +PP +Q    
Sbjct: 230 PPLPPQLPQQPPPLQQPQF 248

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 35.9 bits (84), Expect = 3e-04
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 4  YYCDYCDTYLTHDSPSVRKTHCQGRKH 30
          +YC+ C+   T  S S  K+H +G+KH
Sbjct: 1  FYCELCNVTFT--SESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding

 Score = 36.0 bits (84), Expect = 4e-04
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 3  KYYCDYCDTYLTHDSPSVRKTHCQGRKHK 31
          ++YC  CD Y    S +  + H + +KHK
Sbjct: 1  QFYCVACDKYFK--SENALENHLKSKKHK 27

This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
KOG3454|consensus	165		99.96
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	99.81
COG5136	188	U1 snRNP-specific protein C [RNA processing and mo	99.67
KOG0150|consensus	336		99.15
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	99.09
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	98.55
KOG4727|consensus	193		98.34
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.1
KOG0717|consensus	508		97.51
KOG1924|consensus	1102		96.95
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	96.95
KOG2893|consensus	341		96.68
KOG3408|consensus	129		96.65
KOG0227|consensus	222		96.62
PF04988	165	AKAP95: A-kinase anchoring protein 95 (AKAP95); In	96.19
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	96.01
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	95.48
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	95.17
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	94.83
PF14968	336	CCDC84: Coiled coil protein 84	94.78
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	94.73
PF03194	254	LUC7: LUC7 N_terminus; InterPro: IPR004882 This fa	94.42
KOG2384|consensus	223		93.46
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	93.21
KOG3032|consensus	264		93.19
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	93.12
KOG2785|consensus	390		92.02
KOG0796|consensus	319		91.97
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	91.41
smart00355	26	ZnF_C2H2 zinc finger.	91.05
PF14968	336	CCDC84: Coiled coil protein 84	88.46
KOG2837|consensus	309		87.89
PTZ00448	373	hypothetical protein; Provisional	84.16
PHA02768	55	hypothetical protein; Provisional	84.07
COG5200	258	LUC7 U1 snRNP component, mediates U1 snRNP associa	83.16
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	83.01
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	80.19

>KOG3454|consensus

Probab=99.96  E-value=3.2e-29  Score=202.93  Aligned_cols=71  Identities=72%  Similarity=1.173  Sum_probs=68.1

Q ss_pred             CCcccccCCcceeccCChHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCC
Q psy6569           1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAGKIANNPFGNKG   71 (164)
Q Consensus         1 MPRYYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkryY~~~~eeqaq~iiD~~tra~~~G~~~~~p~~~~p   71 (164)
                      |+||||||||+||||||+||||+|+.|+||++||+.||++|.||+||.+||+++++|..+++...+|.+..
T Consensus         1 MpRYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~YY~k~~eeqAq~liD~~~~~~~~~~g~~~~~~~~~   71 (165)
T KOG3454|consen    1 MPRYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDYYQKWMEEQAQKLIDETILRFIGKKGQKVPFSNAR   71 (165)
T ss_pred             CCcchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccc
Confidence            89999999999999999999999999999999999999999999999999999999999999988888543

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.81  E-value=9.5e-21  Score=120.68  Aligned_cols=38  Identities=74%  Similarity=1.416  Sum_probs=26.4

Q ss_pred             CCcccccCCcceeccCChHHHHhhhchhhHHHHHHHHH
Q psy6569           1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYY   38 (164)
Q Consensus         1 MPRYYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkryY   38 (164)
                      |+||||||||+||++|++++|++|+.|++|++||++||
T Consensus         1 m~ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~~y   38 (38)
T PF06220_consen    1 MPRYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKRYY   38 (38)
T ss_dssp             --S-B-TTT--B-S--SHHHHHHHT--THHHHHHHHHT
T ss_pred             CcCeecccccceecCCChHHHHHhhccHHHHHHHHHhC
Confidence            79999999999999999999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>COG5136 U1 snRNP-specific protein C [RNA processing and modification]

Probab=99.67  E-value=8.3e-17  Score=132.02  Aligned_cols=49  Identities=49%  Similarity=0.926  Sum_probs=44.6

Q ss_pred             CCcccccCCcceeccCChHHHHhhhchhhHHHHHHHHHHHHHHHHHHHH
Q psy6569           1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNL   49 (164)
Q Consensus         1 MPRYYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkryY~~~~eeqaq~i   49 (164)
                      |+|||||||++|||||+.||||.|+.|++|..++++||.+..++.+.+.
T Consensus         1 MpRY~CeyC~~~LthD~lsvRk~H~~G~~H~~~~~dYY~~~a~di~~e~   49 (188)
T COG5136           1 MPRYFCEYCNKMLTHDRLSVRKMHCGGAKHGLMRKDYYMEMAEDIAAEM   49 (188)
T ss_pred             CcchHHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999887444443

>KOG0150|consensus

Probab=99.15  E-value=3.8e-11  Score=106.25  Aligned_cols=43  Identities=33%  Similarity=0.749  Sum_probs=38.5

Q ss_pred             CcccccCCcceeccCChHHHHhhhchhhHHHHHHHHHHHHHHHH
Q psy6569           2 PKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQ   45 (164)
Q Consensus         2 PRYYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkryY~~~~eeq   45 (164)
                      +++|||||++||. |+..++..|++|++|++||+++++..++..
T Consensus         9 ~kkfCdyCKiWi~-dN~~Sv~~He~GkrHke~V~Kritdi~rks   51 (336)
T KOG0150|consen    9 PKKFCDYCKIWIK-DNPASVRFHERGKRHKENVAKRITDIHRKS   51 (336)
T ss_pred             cchhhhhhhhhhc-CChHHHHhHhhhhHHHHHHHHHHHHHHHhh
Confidence            6899999999995 888888999999999999999998876643

>smart00451 ZnF_U1 U1-like zinc finger

Probab=99.09  E-value=5.6e-11  Score=71.27  Aligned_cols=35  Identities=34%  Similarity=0.652  Sum_probs=30.2

Q ss_pred             CCcccccCCcceeccCChHHHHhhhchhhHHHHHHHH
Q psy6569           1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFY   37 (164)
Q Consensus         1 MPRYYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkry   37 (164)
                      +++|||++|+++|+  +.+.+++|+.|++|++|++++
T Consensus         1 ~~~~~C~~C~~~~~--~~~~~~~H~~gk~H~~~~~~~   35 (35)
T smart00451        1 TGGFYCKLCNVTFT--DEISVEAHLKGKKHKKNVKKR   35 (35)
T ss_pred             CcCeEccccCCccC--CHHHHHHHHChHHHHHHHHcC
Confidence            46899999999994  566679999999999999864

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=98.55  E-value=4.3e-08  Score=56.99  Aligned_cols=27  Identities=44%  Similarity=0.977  Sum_probs=24.3

Q ss_pred             cccccCCcceeccCChHHHHhhhchhhHH
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQGRKHK   31 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~GkKHk   31 (164)
                      +|||++||++|  .+.+.+++|++|++|+
T Consensus         1 q~~C~~C~k~f--~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    1 QFYCDACDKYF--SSENQLKQHMKSKKHK   27 (27)
T ss_dssp             -CBBTTTTBBB--SSHHHHHCCTTSHHHH
T ss_pred             CCCcccCCCCc--CCHHHHHHHHccCCCC
Confidence            59999999999  5788999999999996

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG4727|consensus

Probab=98.34  E-value=5.2e-07  Score=75.14  Aligned_cols=33  Identities=39%  Similarity=0.771  Sum_probs=28.7

Q ss_pred             CcccccCCcceeccCChHHHHhhhchhhHHHHHHH
Q psy6569           2 PKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKF   36 (164)
Q Consensus         2 PRYYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkr   36 (164)
                      .+||||.||+.+ .||.. +.+|++|++|+.|+..
T Consensus        74 ~GyyCdVCdcvv-KDSin-flDHiNgKkHqrnlgm  106 (193)
T KOG4727|consen   74 GGYYCDVCDCVV-KDSIN-FLDHINGKKHQRNLGM  106 (193)
T ss_pred             Cceeeeecceee-hhhHH-HHHHhccHHHHHHHhh
Confidence            479999999999 58877 6999999999999543

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.10  E-value=2e-06  Score=48.35  Aligned_cols=25  Identities=32%  Similarity=0.842  Sum_probs=23.3

Q ss_pred             ccccCCcceeccCChHHHHhhhchhhH
Q psy6569           4 YYCDYCDTYLTHDSPSVRKTHCQGRKH   30 (164)
Q Consensus         4 YYCDYCdk~fthDS~SvRK~H~~GkKH   30 (164)
                      |+|+.|++.|  .+...+++|++|++|
T Consensus         1 ~~C~~C~~~f--~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSF--SSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEE--SSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCc--CCHHHHHHHHCcCCC
Confidence            7999999999  578889999999998

>KOG0717|consensus

Probab=97.51  E-value=8.3e-05  Score=69.50  Aligned_cols=40  Identities=35%  Similarity=0.537  Sum_probs=36.3

Q ss_pred             ccccCCcceeccCChHHHHhhhchhhHHHHHHHHHHHHHHHH
Q psy6569           4 YYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQ   45 (164)
Q Consensus         4 YYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkryY~~~~eeq   45 (164)
                      +||..|++.|  .|...+++|+++++|++||.+--+++.++.
T Consensus       293 lyC~vCnKsF--KseKq~kNHEnSKKHkenv~eLrqemEEEe  332 (508)
T KOG0717|consen  293 LYCVVCNKSF--KSEKQLKNHENSKKHKENVAELRQEMEEEE  332 (508)
T ss_pred             eEEeeccccc--cchHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence            7999999999  689999999999999999999888776664

>KOG1924|consensus

Probab=96.95  E-value=0.022  Score=56.97  Aligned_cols=9  Identities=11%  Similarity=-0.193  Sum_probs=6.1

Q ss_pred             cccCCccee
Q psy6569           5 YCDYCDTYL   13 (164)
Q Consensus         5 YCDYCdk~f   13 (164)
                      .|.+||--|
T Consensus       438 Hr~~~DPdf  446 (1102)
T KOG1924|consen  438 HRTGMDPDF  446 (1102)
T ss_pred             hcCCCCCCc
Confidence            477777665

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=96.95  E-value=0.0004  Score=63.83  Aligned_cols=34  Identities=26%  Similarity=0.478  Sum_probs=30.4

Q ss_pred             CcccccCCcceeccCChHHHHhhhchhhHHHHHHHH
Q psy6569           2 PKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFY   37 (164)
Q Consensus         2 PRYYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkry   37 (164)
                      +++||..|.+||  .+.+|+..|+.|++|.+|+++.
T Consensus       237 ~~~YC~~C~r~f--~~~~VFe~Hl~gK~H~k~~~~~  270 (470)
T COG5188         237 PKVYCVKCGREF--SRSKVFEYHLEGKRHCKEGQGK  270 (470)
T ss_pred             cceeeHhhhhHh--hhhHHHHHHHhhhhhhhhhhhh
Confidence            579999999999  5789999999999999997654

>KOG2893|consensus

Probab=96.68  E-value=0.02  Score=50.88  Aligned_cols=25  Identities=24%  Similarity=0.582  Sum_probs=20.5

Q ss_pred             cccccCCcceeccCChHHHHhhhchhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQGRK   29 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~GkK   29 (164)
                      |-||=|||+-|  |...++.+|..-+.
T Consensus        10 kpwcwycnref--ddekiliqhqkakh   34 (341)
T KOG2893|consen   10 KPWCWYCNREF--DDEKILIQHQKAKH   34 (341)
T ss_pred             Cceeeeccccc--chhhhhhhhhhhcc
Confidence            56999999999  77888888876554

>KOG3408|consensus

Probab=96.65  E-value=0.00091  Score=53.22  Aligned_cols=33  Identities=33%  Similarity=0.584  Sum_probs=28.2

Q ss_pred             CcccccCCcceeccCChHHHHhhhchhhHHHHHHH
Q psy6569           2 PKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKF   36 (164)
Q Consensus         2 PRYYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkr   36 (164)
                      .-|||-.|.+||  ++.++++.|..++.|++-|++
T Consensus        56 GqfyCi~CaRyF--i~~~~l~~H~ktK~HKrRvK~   88 (129)
T KOG3408|consen   56 GQFYCIECARYF--IDAKALKTHFKTKVHKRRVKE   88 (129)
T ss_pred             ceeehhhhhhhh--cchHHHHHHHhccHHHHHHHh
Confidence            358999999999  578889999999999965553

>KOG0227|consensus

Probab=96.62  E-value=0.0014  Score=55.90  Aligned_cols=42  Identities=33%  Similarity=0.498  Sum_probs=35.0

Q ss_pred             CcccccCCcceeccCChHHHHhhhchhhHHHHHHHHHHHHHHHH
Q psy6569           2 PKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQ   45 (164)
Q Consensus         2 PRYYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkryY~~~~eeq   45 (164)
                      .+|-|+-|.+.  |.+-.++..|..|+||+.|+.++-.+..++.
T Consensus        52 G~yeCkLClT~--H~ne~Syl~HtqGKKHq~Nlarraa~e~k~s   93 (222)
T KOG0227|consen   52 GKYECKLCLTL--HNNEGSYLAHTQGKKHQTNLARRAAKEAKES   93 (222)
T ss_pred             cceeehhhhhh--hcchhhhhhhhccchhhHHHHHHHHHHhhcC
Confidence            47899999985  5788889999999999999999887654433

>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex

Probab=96.19  E-value=0.013  Score=48.33  Aligned_cols=62  Identities=21%  Similarity=0.446  Sum_probs=49.2

Q ss_pred             ccccCCcceeccCChHHHHhhhchhhHHHHHHHHHHHHHHH---HHHHHH-----HHHHHHHHcCCCCCCCCCC
Q psy6569           4 YYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEE---QAQNLI-----DATTAAYKAGKIANNPFGN   69 (164)
Q Consensus         4 YYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkryY~~~~ee---qaq~ii-----D~~tra~~~G~~~~~p~~~   69 (164)
                      ..|-.||++|. ...++..+|+.+.-|..|++.+..++.++   .|++++     .+.-..|.+|.   |||..
T Consensus        92 ~hCsACd~~IP-~~~~~vQ~Hl~S~~H~~Nrr~~~eq~Kr~sl~vA~Silnnk~Ik~~le~ylKGe---nPF~~  161 (165)
T PF04988_consen   92 AHCSACDVFIP-MQHSSVQKHLKSQDHNKNRRAMMEQSKRSSLSVARSILNNKHIKKRLEKYLKGE---NPFTD  161 (165)
T ss_pred             hhhhHhhhhcc-CcHHHHHHHhccHHHHhhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCC---CCCcC
Confidence            47999999995 78888899999999999999999988774   455553     33466677787   66753

The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=96.01  E-value=0.011  Score=50.30  Aligned_cols=59  Identities=31%  Similarity=0.438  Sum_probs=42.1

Q ss_pred             CcccccCCcceeccCChHHHHhhhchhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHcCCCC
Q psy6569           2 PKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQK-----------WMEEQAQNLIDATTAAYKAGKIA   63 (164)
Q Consensus         2 PRYYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkryY~~-----------~~eeqaq~iiD~~tra~~~G~~~   63 (164)
                      .+|-|.-|++.  |-+-+++..|..|+||+.|+.++-..           .+-.+-|++|++...-...| |+
T Consensus        52 Gk~vC~LC~T~--H~~e~Sy~~H~~GKKH~~n~~rrs~eksslgrEnqtthdfrqqQkiieaKqSlk~~G-iP  121 (222)
T COG5246          52 GKYVCLLCKTK--HLTEMSYVKHREGKKHKENSSRRSEEKSSLGRENQTTHDFRQQQKIIEAKQSLKRSG-IP  121 (222)
T ss_pred             CcEEeeeeccc--cccHHHHHHhhccchhhhhHHHHHHHhhcccccCCchhhhhhHHHHHHHHHHHHhcC-CC
Confidence            47899999986  56888889999999999999998321           11234456666665555555 44

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=95.48  E-value=0.0064  Score=47.98  Aligned_cols=33  Identities=27%  Similarity=0.481  Sum_probs=28.7

Q ss_pred             cccccCCcceeccCChHHHHhhhchhhHHHHHHHH
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFY   37 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkry   37 (164)
                      -+||-.|++||  +|..+.+.|..|+-|++-+++-
T Consensus        55 qhYCieCaryf--~t~~aL~~HkkgkvHkRR~Kel   87 (126)
T COG5112          55 QHYCIECARYF--ITEKALMEHKKGKVHKRRAKEL   87 (126)
T ss_pred             eeeeehhHHHH--HHHHHHHHHhccchhHHHHHHH
Confidence            48999999999  7999999999999999665543

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=95.17  E-value=0.015  Score=30.95  Aligned_cols=21  Identities=24%  Similarity=0.540  Sum_probs=16.2

Q ss_pred             ccccCCcceeccCChHHHHhhhc
Q psy6569           4 YYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         4 YYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      |-|++|++.|  ++...+++|+.
T Consensus         1 ~~C~~C~~~~--~~~~~l~~H~~   21 (24)
T PF13894_consen    1 FQCPICGKSF--RSKSELRQHMR   21 (24)
T ss_dssp             EE-SSTS-EE--SSHHHHHHHHH
T ss_pred             CCCcCCCCcC--CcHHHHHHHHH
Confidence            6799999999  67888899875

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=94.83  E-value=0.0089  Score=41.08  Aligned_cols=29  Identities=24%  Similarity=0.652  Sum_probs=24.2

Q ss_pred             cccccCCcceeccCChHHHHhhhchhhHHHH
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQGRKHKDN   33 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~GkKHk~N   33 (164)
                      .+.|.+|++.|  ++.+.++.|.+...|++.
T Consensus        50 ~~~C~~C~~~f--~s~~~l~~Hm~~~~H~~~   78 (100)
T PF12756_consen   50 SFRCPYCNKTF--RSREALQEHMRSKHHKKR   78 (100)
T ss_dssp             SEEBSSSS-EE--SSHHHHHHHHHHTTTTC-
T ss_pred             CCCCCccCCCC--cCHHHHHHHHcCccCCCc
Confidence            48999999999  688889999999999864

>PF14968 CCDC84: Coiled coil protein 84

Probab=94.78  E-value=0.05  Score=48.98  Aligned_cols=36  Identities=22%  Similarity=0.594  Sum_probs=29.5

Q ss_pred             cccccCCcceeccCCh-----HHHHhhhchhhHHHHHHHHHH
Q psy6569           3 KYYCDYCDTYLTHDSP-----SVRKTHCQGRKHKDNVKFYYQ   39 (164)
Q Consensus         3 RYYCDYCdk~fthDS~-----SvRK~H~~GkKHk~NVkryY~   39 (164)
                      +|||.+|+.-+. |..     .....|+.+..|++||++|+.
T Consensus        58 ~fWC~fC~~ev~-~~~s~~~~~~ai~HLaS~eH~k~vk~F~w   98 (336)
T PF14968_consen   58 RFWCVFCDCEVR-EHDSSFACGGAIEHLASPEHRKNVKKFWW   98 (336)
T ss_pred             eeEeeCccchhh-hccchhhhccHHhhcCCHHHHHHHHHHHH
Confidence            799999999994 442     234679999999999999974

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.73  E-value=0.024  Score=30.92  Aligned_cols=22  Identities=32%  Similarity=0.547  Sum_probs=18.4

Q ss_pred             ccccCCcceeccCChHHHHhhhch
Q psy6569           4 YYCDYCDTYLTHDSPSVRKTHCQG   27 (164)
Q Consensus         4 YYCDYCdk~fthDS~SvRK~H~~G   27 (164)
                      |-|++|++.|  .+.+.++.|..-
T Consensus         1 y~C~~C~~~f--~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSF--SSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEE--SSHHHHHHHHHH
T ss_pred             CCCCCCCCcc--CCHHHHHHHHhH
Confidence            6799999999  578888888753

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes

Probab=94.42  E-value=0.056  Score=46.31  Aligned_cols=44  Identities=18%  Similarity=0.445  Sum_probs=32.9

Q ss_pred             ccccCCcceec-cCChHHHHhhhchhhHH--HHHHHHHHHHHHHHHH
Q psy6569           4 YYCDYCDTYLT-HDSPSVRKTHCQGRKHK--DNVKFYYQKWMEEQAQ   47 (164)
Q Consensus         4 YYCDYCdk~ft-hDS~SvRK~H~~GkKHk--~NVkryY~~~~eeqaq   47 (164)
                      --||.|+.||+ +|+.+=+.+|..|+.|.  ..+++.|..+.+...+
T Consensus       191 ~VCeVCGA~Ls~~D~d~RladH~~GK~HlGy~~IR~~l~el~e~~~~  237 (254)
T PF03194_consen  191 EVCEVCGAFLSVGDNDRRLADHFGGKQHLGYAKIREKLKELKEKREE  237 (254)
T ss_pred             cchhhhhhHHhccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHHH
Confidence            36999999984 46666566799999999  5667777776665554

LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].

>KOG2384|consensus

Probab=93.46  E-value=0.021  Score=48.94  Aligned_cols=29  Identities=28%  Similarity=0.722  Sum_probs=23.1

Q ss_pred             cccccCCcceeccCChHHHHhhhchhhHHHHH
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNV   34 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~GkKHk~NV   34 (164)
                      -|||+.||+||. ||.+  .+|.++.-|+-|.
T Consensus        84 lfyCE~Cd~~ip-~~~~--snH~tSttHllsl  112 (223)
T KOG2384|consen   84 LFYCEVCDIYIP-NSKK--SNHFTSTTHLLSL  112 (223)
T ss_pred             cchhhhhhhhcc-CCCC--ccchhhHHHHhhh
Confidence            589999999994 6655  4799999998543

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.21  E-value=0.071  Score=35.97  Aligned_cols=25  Identities=32%  Similarity=0.660  Sum_probs=20.8

Q ss_pred             cccccCCcceeccCChHHHHhhhchhhHHH
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQGRKHKD   32 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~GkKHk~   32 (164)
                      .-||+-|.+.|. |    +..|+.+.+|++
T Consensus         5 ~GYCE~C~~ky~-~----l~~Hi~s~~Hr~   29 (49)
T PF07535_consen    5 PGYCENCRVKYD-D----LEEHIQSEKHRK   29 (49)
T ss_pred             CccCccccchhh-h----HHHHhCCHHHHH
Confidence            359999999993 2    678999999994

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>KOG3032|consensus

Probab=93.19  E-value=0.056  Score=47.37  Aligned_cols=32  Identities=22%  Similarity=0.586  Sum_probs=27.7

Q ss_pred             ccccCCcceeccCChHHHHhhhchhhHHHHHHHHH
Q psy6569           4 YYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYY   38 (164)
Q Consensus         4 YYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkryY   38 (164)
                      .-|-.|++-|  . .++|..|.+|++|+++|..--
T Consensus        36 l~C~vCn~pi--K-p~lW~vHvnsKkHre~id~lK   67 (264)
T KOG3032|consen   36 LVCRVCNVPI--K-PSLWDVHVNSKKHREAIDSLK   67 (264)
T ss_pred             eeEEEecCcc--c-HHHHHHHhccHHHHHHHHHHH
Confidence            4699999999  3 999999999999998886544

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=93.12  E-value=0.068  Score=30.12  Aligned_cols=21  Identities=29%  Similarity=0.564  Sum_probs=18.3

Q ss_pred             ccccCCcceeccCChHHHHhhhc
Q psy6569           4 YYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         4 YYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      |.|+.|++.|  .+.+.+.+|..
T Consensus         2 ~~C~~C~~~F--~~~~~l~~H~~   22 (27)
T PF13912_consen    2 FECDECGKTF--SSLSALREHKR   22 (27)
T ss_dssp             EEETTTTEEE--SSHHHHHHHHC
T ss_pred             CCCCccCCcc--CChhHHHHHhH
Confidence            7899999999  67888899974

>KOG2785|consensus

Probab=92.02  E-value=0.047  Score=50.24  Aligned_cols=36  Identities=25%  Similarity=0.579  Sum_probs=32.5

Q ss_pred             cccccCCcceeccCChHHHHhhhchhhHHHHHHHHHHH
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQK   40 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkryY~~   40 (164)
                      -+||..|++.|  .|....++|+.+++|++|+++++++
T Consensus        68 ~~~c~~c~k~~--~s~~a~~~hl~Sk~h~~~~~~~~r~  103 (390)
T KOG2785|consen   68 VVYCEACNKSF--ASPKAHENHLKSKKHVENLSNHQRS  103 (390)
T ss_pred             ceehHHhhccc--cChhhHHHHHHHhhcchhhhhhhcc
Confidence            37999999999  5788889999999999999999983

>KOG0796|consensus

Probab=91.97  E-value=0.23  Score=44.80  Aligned_cols=44  Identities=20%  Similarity=0.417  Sum_probs=32.3

Q ss_pred             cccCCcceec-cCChHHHHhhhchhhHH--HHHHHHHHHHHHHHHHH
Q psy6569           5 YCDYCDTYLT-HDSPSVRKTHCQGRKHK--DNVKFYYQKWMEEQAQN   48 (164)
Q Consensus         5 YCDYCdk~ft-hDS~SvRK~H~~GkKHk--~NVkryY~~~~eeqaq~   48 (164)
                      .|+.|+.||. +|+.+=..+|++|+-|.  ..++..|.++.++.+..
T Consensus       188 VCeVCGa~L~~~D~d~RlaDHf~GKlHlGy~~iR~~l~eLk~~~~~~  234 (319)
T KOG0796|consen  188 VCEVCGAFLSVNDADRRLADHFGGKLHLGYVLIREKLAELKKEKAKR  234 (319)
T ss_pred             HHHhhhHHHhccchHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhHH
Confidence            5999999985 45555445699999999  45677777776655554

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=91.41  E-value=0.17  Score=34.32  Aligned_cols=25  Identities=32%  Similarity=0.582  Sum_probs=20.5

Q ss_pred             cccccCCcceeccCChHHHHhhhchhhHHH
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQGRKHKD   32 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~GkKHk~   32 (164)
                      .-||+-|...|  |   .+.+|+.+.+|++
T Consensus         5 ~GYCE~Cr~kf--d---~l~~Hi~s~~Hr~   29 (49)
T smart00586        5 PGYCENCREKY--D---DLETHLLSEKHRR   29 (49)
T ss_pred             CcccccHhHHH--h---hHHHHhccHHHHH
Confidence            34999999999  3   2678999999994

>smart00355 ZnF_C2H2 zinc finger

Probab=91.05  E-value=0.17  Score=26.71  Aligned_cols=21  Identities=33%  Similarity=0.613  Sum_probs=16.7

Q ss_pred             ccccCCcceeccCChHHHHhhhc
Q psy6569           4 YYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         4 YYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      |-|+.|++.|  .+.+.+..|..
T Consensus         1 ~~C~~C~~~f--~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVF--KSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchh--CCHHHHHHHHH
Confidence            5799999999  45677788876

>PF14968 CCDC84: Coiled coil protein 84

Probab=88.46  E-value=0.54  Score=42.47  Aligned_cols=34  Identities=21%  Similarity=0.595  Sum_probs=28.2

Q ss_pred             cccCCcceeccCChHHHHhhhchhhHHHHHHHHHHHHHH
Q psy6569           5 YCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWME   43 (164)
Q Consensus         5 YCDYCdk~fthDS~SvRK~H~~GkKHk~NVkryY~~~~e   43 (164)
                      ||+.|.+..  |.   ++.|.-+.+|+++++.++..|..
T Consensus         1 yC~vCr~~h--~~---gr~H~Y~~~Hq~~L~~~L~rf~~   34 (336)
T PF14968_consen    1 YCEVCRRNH--DQ---GRRHVYSPKHQKSLSAFLSRFRS   34 (336)
T ss_pred             CcchhhCcc--cc---cCCCccCHHHHHHHHHHHHHHHH
Confidence            899999875  43   79999999999999888877543

>KOG2837|consensus

Probab=87.89  E-value=0.19  Score=44.98  Aligned_cols=54  Identities=13%  Similarity=0.357  Sum_probs=38.4

Q ss_pred             cccccCCcceeccCChHHHHhhhchhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKF-------YYQKWMEEQAQNLIDATTAAYK   58 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkr-------yY~~~~eeqaq~iiD~~tra~~   58 (164)
                      ||||.-|.+-+ + +.+.++-|+.+-.|++....       +.+.|..+.++++.+-..+++.
T Consensus        25 RwyCqmCQkQc-r-DeNGFkCH~~SeSHqRql~~~~~Np~~~~~~fs~eF~~dFl~LLr~~~g   85 (309)
T KOG2837|consen   25 RWYCQMCQKQC-R-DENGFKCHTMSESHQRQLLLFALNPGRSLERFSNEFEKDFLSLLRQRHG   85 (309)
T ss_pred             HHHHHHHHHHh-c-cccccccccCCHHHHHHHHHHHhCcchhHHHhHHHHHHHHHHHHHHHhc
Confidence            79999999999 3 47889999999999976543       3445555555555555444443

>PTZ00448 hypothetical protein; Provisional

Probab=84.16  E-value=1  Score=41.50  Aligned_cols=37  Identities=24%  Similarity=0.255  Sum_probs=33.1

Q ss_pred             cccccCCcceeccCChHHHHhhhchhhHHHHHHHHHHHH
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKW   41 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkryY~~~   41 (164)
                      .|-|--|+..|  ++...++.|..+--|+-|+++....+
T Consensus       314 ~~tC~~C~v~F--~~~~~qR~H~KSDwHrYNLKRkl~gL  350 (373)
T PTZ00448        314 MLLCRKCNIQL--MDHNAFKQHYRSEWHIFNTKRNARKM  350 (373)
T ss_pred             Ccccccccccc--CCHHHHHHHhhhhHHHHHHHHHhcCC
Confidence            37799999999  57888999999999999999999864

>PHA02768 hypothetical protein; Provisional

Probab=84.07  E-value=0.64  Score=32.19  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=15.6

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|+.|++.|+  ..+.++.|..
T Consensus         5 ~y~C~~CGK~Fs--~~~~L~~H~r   26 (55)
T PHA02768          5 GYECPICGEIYI--KRKSMITHLR   26 (55)
T ss_pred             ccCcchhCCeec--cHHHHHHHHH
Confidence            689999999995  3444455543

>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]

Probab=83.16  E-value=0.85  Score=39.90  Aligned_cols=33  Identities=24%  Similarity=0.509  Sum_probs=23.9

Q ss_pred             cccCCcceecc-CChHHHHhhhchhhHHHHHHHH
Q psy6569           5 YCDYCDTYLTH-DSPSVRKTHCQGRKHKDNVKFY   37 (164)
Q Consensus         5 YCDYCdk~fth-DS~SvRK~H~~GkKHk~NVkry   37 (164)
                      -|+.|..||+. |+..-..+|.+|+-|..-+.-+
T Consensus       187 vC~iCgayLsrlDtdrrladHf~GklHlGy~~~R  220 (258)
T COG5200         187 VCGICGAYLSRLDTDRRLADHFNGKLHLGYLLVR  220 (258)
T ss_pred             hhhhhhhHHHhcchhhHHHHHhccchhhhHHHHH
Confidence            59999999864 4444445699999999654433

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=83.01  E-value=0.78  Score=28.59  Aligned_cols=23  Identities=30%  Similarity=0.527  Sum_probs=15.0

Q ss_pred             cccccCCcceeccC--ChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHD--SPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthD--S~SvRK~H~   25 (164)
                      +..|.||++.|..+  +.+..+.|+
T Consensus        16 ~a~C~~C~~~~~~~~~~ts~l~~HL   40 (45)
T PF02892_consen   16 KAKCKYCGKVIKYSSGGTSNLKRHL   40 (45)
T ss_dssp             -EEETTTTEE-----SSTHHHHHHH
T ss_pred             eEEeCCCCeEEeeCCCcHHHHHHhh
Confidence            56899999999764  666777787

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=80.19  E-value=1.2  Score=24.45  Aligned_cols=20  Identities=40%  Similarity=0.687  Sum_probs=13.2

Q ss_pred             ccccCCcceeccCChHHHHhhhc
Q psy6569           4 YYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         4 YYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      |-|++|+ |.+ . .+..++|+.
T Consensus         1 y~C~~C~-y~t-~-~~~l~~H~~   20 (24)
T PF13909_consen    1 YKCPHCS-YST-S-KSNLKRHLK   20 (24)
T ss_dssp             EE-SSSS--EE-S-HHHHHHHHH
T ss_pred             CCCCCCC-CcC-C-HHHHHHHHH
Confidence            6799999 665 3 667777864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	164
2vrd_A	61	The Structure Of The Zinc Finger From The Human Spl		1e-26
3cw1_L	77	Crystal Structure Of Human Spliceosomal U1 Snrnp Le		2e-26

>pdb|2VRD|A Chain A, The Structure Of The Zinc Finger From The Human Spliceosomal Protein U1c Length = 61

Iteration: 1
 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/61 (85%), Positives = 57/61 (93%)
Query: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
          MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1  MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 K 61
          K
Sbjct: 61 K 61

>pdb|3CW1|L Chain L, Crystal Structure Of Human Spliceosomal U1 Snrnp Length = 77

Iteration: 1
 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 52/62 (83%), Positives = 57/62 (91%)
Query: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
          MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YY KWMEEQAQ+LID TTAA++ G
Sbjct: 1  MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYCKWMEEQAQSLIDKTTAAFQQG 60
Query: 61 KI 62
          KI
Sbjct: 61 KI 62
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	5e-30
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	2e-08
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	2e-07
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	7e-07
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	1e-06
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	1e-06
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	1e-06
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	2e-06
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	2e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-04
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	3e-06
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	4e-06
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	5e-06
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	7e-05
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	4e-04
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	7e-05

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A Length = 77

 Score =  103 bits (259), Expect = 5e-30
 Identities = 55/73 (75%), Positives = 60/73 (82%)

Query: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
          MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YY KWMEEQAQ+LID TTAA++ G
Sbjct: 1  MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYCKWMEEQAQSLIDKTTAAFQQG 60

Query: 61 KIANNPFGNKGGA 73
          KI   PF     A
Sbjct: 61 KIPPTPFSAPPPA 73

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Length = 504

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 95  GMQQGPPPGMMPGMMPPGMNMMMMGMNPGMMGMRPMMGGMGGMGPMMAMGPMGPMGPMRP 154
           G++     G M   +       +      MM  R ++  MGGM  + +M  M        
Sbjct: 436 GIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPR-VLHHMGGMAGLQSM--MRQFQQGAA 492

Query: 155 PMMQDHP 161
             M+   
Sbjct: 493 GNMKGMM 499

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Length = 504

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 12/57 (21%), Positives = 16/57 (28%)

Query: 94  PGMQQGPPPGMMPGMMPPGMNMMMMGMNPGMMGMRPMMGGMGGMGPMMAMGPMGPMG 150
             M +      M  +      MM   +   M GM  +   M       A    G MG
Sbjct: 444 GDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAAGNMKGMMG 500

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Length = 504

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 88  RQVGPPPGMQQGP--PPGMMPGMMPPGMNMMMMGMNPGMMGMRPMMGGMGGMGPMMAMGP 145
           +++G   G+ +G      +    M      M   M+P ++     M G+  M      G 
Sbjct: 432 KKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGA 491

Query: 146 MGPMGPM 152
            G M  M
Sbjct: 492 AGNMKGM 498

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Length = 504

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 3/61 (4%)

Query: 104 MMPGM--MPPGMNMMMMGMNPGMMGMRPMMGGMGGMGPMMAMGPMGPMGPMRPPMMQDHP 161
           M+  M  +        M  N     M  +   M  M     +  MG M  +   MM+   
Sbjct: 430 MVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGL-QSMMRQFQ 488

Query: 162 Q 162
           Q
Sbjct: 489 Q 489

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Length = 504

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 16/58 (27%), Positives = 18/58 (31%), Gaps = 3/58 (5%)

Query: 91  GPPPGMQQGPPPGMMPGMMPPGMNMMMMGMNPGMMGMRPMM--GGMGGMGPMMAMGPM 146
                 Q       M  MM P +   M GM  G+  M      G  G M  MM    M
Sbjct: 448 KNVSQSQMAKLNQQMAKMMDPRVLHHMGGM-AGLQSMMRQFQQGAAGNMKGMMGFNNM 504

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Length = 504

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 2/70 (2%)

Query: 70  KGGAAIPPPSNLSSLMPPRQV-GPPPGMQQGPPPGMMPGMM-PPGMNMMMMGMNPGMMGM 127
            G   +    ++S  +   Q+      M +   P ++  M    G+  MM     G  G 
Sbjct: 435 GGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAAGN 494

Query: 128 RPMMGGMGGM 137
              M G   M
Sbjct: 495 MKGMMGFNNM 504

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Length = 504

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 11/67 (16%), Positives = 20/67 (29%)

Query: 81  LSSLMPPRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGMNPGMMGMRPMMGGMGGMGPM 140
           +  +    + G             +   M   M+  ++    GM G++ MM         
Sbjct: 434 MGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAAG 493

Query: 141 MAMGPMG 147
              G MG
Sbjct: 494 NMKGMMG 500

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Length = 504

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 7/45 (15%), Positives = 12/45 (26%), Gaps = 1/45 (2%)

Query: 113 MNMMMMGMNPGMMGMRPMMGGMGGMGPMMAMGPMGPMGPMRPPMM 157
              M+  M  G+ G+         +           M  M  P +
Sbjct: 427 FAQMVKKMG-GIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRV 470

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.5 bits (112), Expect = 4e-07
 Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 1/100 (1%)

Query: 63  ANNPFGNKGGAAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGMNP 122
            N     +    +PP    ++ M   Q+G PP     P  G    + P    +       
Sbjct: 18  QNATPLQQPAQFMPPQDPAAAGMSYGQMGMPP-QGAVPSMGQQQFLTPAQEQLHQQIDQA 76

Query: 123 GMMGMRPMMGGMGGMGPMMAMGPMGPMGPMRPPMMQDHPQ 162
                   +  +  + P   M P  P+    P   Q  P 
Sbjct: 77  TTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPM 116

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.4 bits (109), Expect = 1e-06
 Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 2/98 (2%)

Query: 65  NPFGNKGGAAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGMNPGM 124
             F      A    S     MPP+   P  G QQ   P      +   ++     MN   
Sbjct: 27  AQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQ--LHQQIDQATTSMNDMH 84

Query: 125 MGMRPMMGGMGGMGPMMAMGPMGPMGPMRPPMMQDHPQ 162
           +   P++     M P + +    P+   + PM      
Sbjct: 85  LHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYG 122

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.4 bits (104), Expect = 6e-06
 Identities = 14/96 (14%), Positives = 21/96 (21%)

Query: 68  GNKGGAAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGMNPGMMGM 127
           G   G    PP      M  +Q   P   Q           M       +  ++P     
Sbjct: 39  GMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQ 98

Query: 128 RPMMGGMGGMGPMMAMGPMGPMGPMRPPMMQDHPQR 163
             +   MG            P        M  + + 
Sbjct: 99  PQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRP 134

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 14/86 (16%), Positives = 21/86 (24%)

Query: 73  AAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGMNPGMMGMRPMMG 132
           A +    N + L  P Q  PP             GM P G    M            +  
Sbjct: 12  AQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQ 71

Query: 133 GMGGMGPMMAMGPMGPMGPMRPPMMQ 158
            +      M    +  +  + P    
Sbjct: 72  QIDQATTSMNDMHLHNVPLVDPNAYM 97

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 14/100 (14%), Positives = 22/100 (22%), Gaps = 1/100 (1%)

Query: 63  ANNPFGNKGGAAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGMNP 122
           A   +G        P   +    P         M   P   +        +      ++ 
Sbjct: 12  AQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQ 71

Query: 123 GMMGMRPMMGGMGGMGPMMAMGPMGPMGPMRPPMMQDHPQ 162
            +      M  M      +   P   M P  P  M    Q
Sbjct: 72  QIDQATTSMNDMHLHNVPLV-DPNAYMQPQVPVQMGTPLQ 110

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 41.0 bits (95), Expect = 8e-05
 Identities = 15/111 (13%), Positives = 22/111 (19%), Gaps = 3/111 (2%)

Query: 52  ATTAAYKAGKIANNPFGNKGGAAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGMMPP 111
              A    G++   P G             +     +Q+              +P + P 
Sbjct: 35  PAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPN 94

Query: 112 GMNMMMMGMNPGMMGMRPMMGGMGGMGPMMAMGPMGPMGPMRPPMMQDHPQ 162
                M    P  MG            P            MRP        
Sbjct: 95  A---YMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPID 142

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 12/87 (13%), Positives = 17/87 (19%), Gaps = 2/87 (2%)

Query: 76  PPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGMNPGMMGMRPMMGGMG 135
           P               P   M    P     GM    M M   G  P M   + +     
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPA--AAGMSYGQMGMPPQGAVPSMGQQQFLTPAQE 67

Query: 136 GMGPMMAMGPMGPMGPMRPPMMQDHPQ 162
            +   +              +    P 
Sbjct: 68  QLHQQIDQATTSMNDMHLHNVPLVDPN 94

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 38.7 bits (89), Expect = 5e-04
 Identities = 9/100 (9%), Positives = 16/100 (16%)

Query: 63  ANNPFGNKGGAAIPPPSNLSSLMPPRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGMNP 122
                       + P          +       M     P + P         + MG   
Sbjct: 50  QGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPL 109

Query: 123 GMMGMRPMMGGMGGMGPMMAMGPMGPMGPMRPPMMQDHPQ 162
                       G     M              ++ + P 
Sbjct: 110 QQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPP 149

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 38.7 bits (89), Expect = 5e-04
 Identities = 17/84 (20%), Positives = 22/84 (26%), Gaps = 8/84 (9%)

Query: 86  PPRQVGPPPGMQQG-------PPPGMMPGMMPPGMNMMMMGMNPGMMGMRPMMGGMGGMG 138
             ++V P   +Q G        P   MP   P    M    M     G  P MG    + 
Sbjct: 4   HKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63

Query: 139 PMMAMGPMGPMGPMRPPMMQDHPQ 162
           P         +      M   H  
Sbjct: 64  PAQ-EQLHQQIDQATTSMNDMHLH 86

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A Length = 624

 Score = 45.0 bits (106), Expect = 3e-06
 Identities = 7/48 (14%), Positives = 11/48 (22%), Gaps = 3/48 (6%)

Query: 105 MPGMMPPGMNMMMMGMNPGMMGMRPMMGGMGGMGPMMAMGPMGPMGPM 152
            P +      M+  G +  +    P      G        P    G  
Sbjct: 579 QPIVYGQPQLMLTAGPSVAVP---PQAPFGYGYTAPAYGQPQPGFGYS 623

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A Length = 624

 Score = 44.6 bits (105), Expect = 4e-06
 Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 3/48 (6%)

Query: 97  QQGPPPGMMPGMMPP-GMNMMMMGMNPGMMGMRP--MMGGMGGMGPMM 141
           +  P     P +M   G ++ +    P   G           G G  M
Sbjct: 577 ETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPAYGQPQPGFGYSM 624

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A Length = 624

 Score = 44.6 bits (105), Expect = 5e-06
 Identities = 10/45 (22%), Positives = 11/45 (24%)

Query: 87  PRQVGPPPGMQQGPPPGMMPGMMPPGMNMMMMGMNPGMMGMRPMM 131
           P   G P  M    P   +P   P G             G    M
Sbjct: 580 PIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPAYGQPQPGFGYSM 624

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A Length = 624

 Score = 41.1 bits (96), Expect = 7e-05
 Identities = 6/46 (13%), Positives = 8/46 (17%)

Query: 92  PPPGMQQGPPPGMMPGMMPPGMNMMMMGMNPGMMGMRPMMGGMGGM 137
             P +   P   +  G           G             G G  
Sbjct: 578 TQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPAYGQPQPGFGYS 623

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A Length = 624

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 8/44 (18%), Positives = 10/44 (22%), Gaps = 2/44 (4%)

Query: 83  SLMPPRQVGPPPGMQQGPPPGMMP--GMMPPGMNMMMMGMNPGM 124
            +    Q+    G     PP      G   P       G    M
Sbjct: 581 IVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPAYGQPQPGFGYSM 624

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4 Length = 127

 Score = 39.6 bits (91), Expect = 7e-05
 Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQN 48
               C  C   L   S S +  H Q RKH + V+ Y      E +  
Sbjct: 30 FSDTQCKVCSAVLI--SESQKLAHYQSRKHANKVRRYMAINQGEDSVP 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	99.96
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	98.16
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.94
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	97.71
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	95.09
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	93.66
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	93.07
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	93.04
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	92.81
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.75
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	92.74
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	92.73
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.72
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.7
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	92.62
1ard_A	29	Yeast transcription factor ADR1; transcription reg	92.61
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	92.56
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.55
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	92.43
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	92.38
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.35
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	92.34
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.8
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	91.02
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.6
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	91.55
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	91.4
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.29
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.27
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	91.2
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	90.5
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	91.0
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	91.0
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	90.95
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	90.91
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.89
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	90.21
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	90.8
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.79
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	90.78
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.77
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	90.72
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	90.71
1paa_A	30	Yeast transcription factor ADR1; transcription reg	90.69
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	90.65
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	90.61
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	90.57
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.54
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	90.44
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	90.41
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	90.39
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	90.36
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.35
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	90.35
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	90.25
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.24
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.24
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	90.23
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	90.22
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	90.2
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	90.18
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	90.18
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.16
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	90.14
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	90.13
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	90.12
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	90.09
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	90.09
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	90.06
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.04
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.01
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	89.98
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	89.94
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	89.93
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	89.91
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.9
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	89.86
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	89.81
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.74
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	89.68
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	89.58
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	89.54
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	89.5
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	89.5
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	89.43
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	89.32
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	89.31
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	89.27
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	89.26
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	89.25
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	89.24
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	89.24
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	89.19
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.18
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	89.18
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	89.18
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	89.13
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.13
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	89.11
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	89.09
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	89.08
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	89.05
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	89.0
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	88.99
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	88.99
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.98
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	88.98
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.97
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.95
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	88.95
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	88.93
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.9
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	88.88
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.86
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	88.86
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.85
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	88.78
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.75
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	88.65
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	88.62
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	88.62
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	88.59
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.56
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.49
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.42
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	88.42
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.25
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.23
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	87.96
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.86
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	87.86
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	87.77
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.73
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.54
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	87.52
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	87.47
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.23
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	87.2
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	87.18
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	87.06
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	87.03
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	86.98
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	86.8
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	86.62
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	86.6
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	86.57
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	86.47
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	86.47
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	86.38
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	86.27
4f9c_B	144	Protein DBF4 homolog A; Ser/Thr protein kinase, tr	86.27
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	86.09
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	86.03
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	85.92
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	85.72
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	85.67
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	85.59
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	85.59
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	85.1
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	84.96
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	84.95
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	84.4
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	83.86
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	83.67
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	83.42
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	83.42
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	83.28
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	83.19
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	82.81
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	82.73
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	82.05
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	82.0
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	81.97
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	81.82
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	81.81
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	81.77
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	81.74
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	81.06
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	80.85
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	80.66
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	80.3

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=99.96  E-value=7.5e-30  Score=183.83  Aligned_cols=69  Identities=78%  Similarity=1.347  Sum_probs=67.2

Q ss_pred             CCcccccCCcceeccCChHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q psy6569           1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAGKIANNPFGN   69 (164)
Q Consensus         1 MPRYYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkryY~~~~eeqaq~iiD~~tra~~~G~~~~~p~~~   69 (164)
                      ||||||||||+||+|||.++||+|++|++|++||++||++|+++++|+++|++++||++|+++.++|++
T Consensus         1 mPkYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~yy~~~~~~~~~~~id~~~~a~~~g~~~~~~~~~   69 (77)
T 3cw1_L            1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYCKWMEEQAQSLIDKTTAAFQQGKIPPTPFSA   69 (77)
T ss_pred             CCCcccccCCceecCCCHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Confidence            899999999999999999999999999999999999999999999999999999999999999998864

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=98.16  E-value=1e-06  Score=66.04  Aligned_cols=35  Identities=34%  Similarity=0.558  Sum_probs=31.8

Q ss_pred             cccccCCcceeccCChHHHHhhhchhhHHHHHHHHHH
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQ   39 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkryY~   39 (164)
                      .+||++|++.|  +|.+.+++|+.|++|++||+.|+.
T Consensus        32 ~~~C~~C~v~~--~S~s~~~~H~~gkkH~~~v~~~~~   66 (127)
T 1zu1_A           32 DTQCKVCSAVL--ISESQKLAHYQSRKHANKVRRYMA   66 (127)
T ss_dssp             SSEETTTTEEC--CSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCcCcCCCCEe--CCHHHHHHHHCcHHHHHHHHHHhc
Confidence            47999999999  589999999999999999987776

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.94  E-value=4.6e-06  Score=64.10  Aligned_cols=33  Identities=27%  Similarity=0.431  Sum_probs=29.5

Q ss_pred             cccccCCcceeccCChHHHHhhhchhhHHHHHHHH
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFY   37 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkry   37 (164)
                      .|||..|+++|  .+.+.+++|.++++|+++|+..
T Consensus        50 pfyC~~C~K~F--~~~~~L~~H~rsK~HKrrvk~l   82 (124)
T 1zr9_A           50 LHRCLACARYF--IDSTNLKTHFRSKDHKKRLKQL   82 (124)
T ss_dssp             CSEETTTTEEC--SSHHHHHHHTTCHHHHHHHHHH
T ss_pred             ceEcccCcchh--CCHHHHHHHHhhhhhhHHHHHh
Confidence            59999999999  5788899999999999887764

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=97.71  E-value=3.9e-05  Score=68.46  Aligned_cols=32  Identities=31%  Similarity=0.687  Sum_probs=29.5

Q ss_pred             cccccCCcceeccCChHHHHhhhchhhHHHHHHH
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKF   36 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkr   36 (164)
                      ..||+.|+++|  .+.+|++.|+.|++|++|+++
T Consensus       292 ~l~C~~c~K~F--s~~~v~~~hL~GKkh~K~~~~  323 (402)
T 4dgw_A          292 GIYCPFCSRWF--KTSSVFESHLVGKIHKKNESK  323 (402)
T ss_dssp             EECBTTTTBCB--SSHHHHHTTSSSHHHHHHHHH
T ss_pred             Ceeehhhhhhh--ccccccHHHhcccccchhHHH
Confidence            57999999999  589999999999999999766

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=95.09  E-value=0.0046  Score=42.10  Aligned_cols=37  Identities=19%  Similarity=0.273  Sum_probs=30.0

Q ss_pred             CcccccCCcceeccCChHHHHhhhchhhHHHHHHHHHHH
Q psy6569           2 PKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQK   40 (164)
Q Consensus         2 PRYYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkryY~~   40 (164)
                      |+--|.+|++.++ ...+ ..+|+-.++|+.+|+..+++
T Consensus        12 P~~eC~lC~vkYs-~r~s-lqDHIFs~qHI~~vk~~v~~   48 (55)
T 2yrk_A           12 TKPECTLCGVKYS-ARLS-IRDHIFSKQHISKVRETVGS   48 (55)
T ss_dssp             CCSCCTTTTCCCC-SSSC-HHHHHTSHHHHHHHHHTTCS
T ss_pred             CCccccccCcccc-cccc-hhhhhccHHHHHHHHHHHHh
Confidence            4557999999995 3455 48999999999999988754

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=93.66  E-value=0.043  Score=27.71  Aligned_cols=21  Identities=24%  Similarity=0.528  Sum_probs=16.9

Q ss_pred             ccccCCcceeccCChHHHHhhhc
Q psy6569           4 YYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         4 YYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      |-|++|++.|  .+.+.++.|..
T Consensus         2 ~~C~~C~k~f--~~~~~l~~H~~   22 (27)
T 1znf_A            2 YKCGLCERSF--VEKSALSRHQR   22 (27)
T ss_dssp             CBCSSSCCBC--SSHHHHHHHGG
T ss_pred             ccCCCCCCcC--CCHHHHHHHHH
Confidence            7899999999  46677788863

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=93.07  E-value=0.053  Score=29.23  Aligned_cols=22  Identities=18%  Similarity=0.428  Sum_probs=17.6

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  +.+.++.|..
T Consensus         7 ~~~C~~C~k~f~--~~~~l~~H~~   28 (35)
T 1srk_A            7 PFVCRICLSAFT--TKANCARHLK   28 (35)
T ss_dssp             CEECSSSCCEES--SHHHHHHHHG
T ss_pred             CeeCCCCCcccC--CHHHHHHHHH
Confidence            488999999994  6777788864

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.04  E-value=0.046  Score=29.78  Aligned_cols=22  Identities=18%  Similarity=0.594  Sum_probs=17.1

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|.  ..+.++.|..
T Consensus         9 ~~~C~~C~k~f~--~~~~l~~H~~   30 (36)
T 2els_A            9 IFTCEYCNKVFK--FKHSLQAHLR   30 (36)
T ss_dssp             CEECTTTCCEES--SHHHHHHHHH
T ss_pred             CEECCCCCceeC--CHHHHHHHHH
Confidence            588999999994  5666777753

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=92.81  E-value=0.058  Score=29.41  Aligned_cols=22  Identities=18%  Similarity=0.433  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|.  +.+.++.|..
T Consensus        11 ~~~C~~C~k~f~--~~~~l~~H~~   32 (37)
T 1p7a_A           11 PFQCPDCDRSFS--RSDHLALHRK   32 (37)
T ss_dssp             SBCCTTTCCCBS--SHHHHHHHHG
T ss_pred             CccCCCCCcccC--cHHHHHHHHH
Confidence            589999999994  5677788853

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.75  E-value=0.057  Score=29.37  Aligned_cols=21  Identities=29%  Similarity=0.496  Sum_probs=17.1

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|.|++|++.|  .+.+.++.|.
T Consensus         9 ~~~C~~C~k~f--~~~~~l~~H~   29 (36)
T 2elq_A            9 PFKCSLCEYAT--RSKSNLKAHM   29 (36)
T ss_dssp             SEECSSSSCEE--SCHHHHHHHH
T ss_pred             CccCCCCCchh--CCHHHHHHHH
Confidence            48899999999  4677777776

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=92.74  E-value=0.058  Score=27.40  Aligned_cols=21  Identities=33%  Similarity=0.899  Sum_probs=16.7

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|-|++|++.|.  +.+.++.|.
T Consensus         3 ~~~C~~C~~~f~--~~~~l~~H~   23 (30)
T 2m0d_A            3 PYQCDYCGRSFS--DPTSKMRHL   23 (30)
T ss_dssp             CEECTTTCCEES--CHHHHHHHH
T ss_pred             CccCCCCCcccC--CHHHHHHHH
Confidence            478999999994  566677775

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=92.73  E-value=0.059  Score=27.47  Aligned_cols=21  Identities=19%  Similarity=0.369  Sum_probs=16.8

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|-|++|++.|  .+.+.++.|.
T Consensus         3 ~~~C~~C~k~f--~~~~~l~~H~   23 (27)
T 2kvh_A            3 PFSCSLCPQRS--RDFSAMTKHL   23 (27)
T ss_dssp             CEECSSSSCEE--SSHHHHHHHH
T ss_pred             CccCCCcChhh--CCHHHHHHHH
Confidence            47899999999  4567777775

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=92.72  E-value=0.057  Score=28.87  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=17.3

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|.  +.+.++.|..
T Consensus         7 ~~~C~~C~k~f~--~~~~L~~H~~   28 (35)
T 2elx_A            7 GYVCALCLKKFV--SSIRLRSHIR   28 (35)
T ss_dssp             SEECSSSCCEES--SHHHHHHHHH
T ss_pred             CeECCCCcchhC--CHHHHHHHHH
Confidence            489999999994  5677777753

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.70  E-value=0.05  Score=29.70  Aligned_cols=22  Identities=23%  Similarity=0.612  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus         9 ~~~C~~C~k~f--~~~~~l~~H~~   30 (37)
T 2elo_A            9 SYSCPVCEKSF--SEDRLIKSHIK   30 (37)
T ss_dssp             CCEETTTTEEC--SSHHHHHHHHH
T ss_pred             CcCCCCCCCcc--CCHHHHHHHHH
Confidence            48899999999  46677787863

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=92.62  E-value=0.069  Score=27.23  Aligned_cols=22  Identities=23%  Similarity=0.504  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|+.|++.|  .+.+.++.|..
T Consensus         3 ~~~C~~C~k~f--~~~~~l~~H~~   24 (28)
T 2kvf_A            3 PYSCSVCGKRF--SLKHQMETHYR   24 (28)
T ss_dssp             SEECSSSCCEE--SCHHHHHHHHT
T ss_pred             CccCCCCCccc--CCHHHHHHHHH
Confidence            58899999999  46677777763

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=92.61  E-value=0.061  Score=27.32  Aligned_cols=22  Identities=18%  Similarity=0.523  Sum_probs=17.1

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|.  +.+.++.|..
T Consensus         2 ~~~C~~C~~~f~--~~~~l~~H~~   23 (29)
T 1ard_A            2 SFVCEVCTRAFA--RQEHLKRHYR   23 (29)
T ss_dssp             CCBCTTTCCBCS--SHHHHHHHHH
T ss_pred             CeECCCCCcccC--CHHHHHHHHH
Confidence            488999999994  5666777753

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=92.56  E-value=0.062  Score=27.42  Aligned_cols=22  Identities=18%  Similarity=0.354  Sum_probs=17.1

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|.  +.+.++.|..
T Consensus         2 ~~~C~~C~k~f~--~~~~l~~H~~   23 (29)
T 1rik_A            2 KFACPECPKRFM--RSDHLTLHIL   23 (29)
T ss_dssp             CEECSSSSCEES--CSHHHHHHHT
T ss_pred             CccCCCCCchhC--CHHHHHHHHH
Confidence            478999999994  5666778864

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.55  E-value=0.062  Score=29.02  Aligned_cols=22  Identities=18%  Similarity=0.316  Sum_probs=17.3

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus         9 ~~~C~~C~k~f--~~~~~l~~H~~   30 (36)
T 2elt_A            9 PYKCPQCSYAS--AIKANLNVHLR   30 (36)
T ss_dssp             SEECSSSSCEE--SSHHHHHHHHH
T ss_pred             CCCCCCCCccc--CCHHHHHHHHH
Confidence            48899999999  45677777763

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=92.43  E-value=0.059  Score=27.39  Aligned_cols=22  Identities=36%  Similarity=0.695  Sum_probs=16.7

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|.  +.+.++.|..
T Consensus         2 ~~~C~~C~k~f~--~~~~l~~H~~   23 (30)
T 1klr_A            2 TYQCQYCEFRSA--DSSNLKTHIK   23 (30)
T ss_dssp             CCCCSSSSCCCS--CSHHHHHHHH
T ss_pred             CccCCCCCCccC--CHHHHHHHHH
Confidence            478999999994  5566677753

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=92.38  E-value=0.068  Score=27.54  Aligned_cols=22  Identities=23%  Similarity=0.449  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|.  ..+.++.|..
T Consensus         3 ~~~C~~C~k~f~--~~~~l~~H~~   24 (27)
T 2kvg_A            3 PYRCPLCRAGCP--SLASMQAHMR   24 (27)
T ss_dssp             TEEETTTTEEES--CHHHHHHHHT
T ss_pred             CcCCCCCCcccC--CHHHHHHHHH
Confidence            488999999994  5677788863

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.35  E-value=0.071  Score=28.97  Aligned_cols=22  Identities=23%  Similarity=0.486  Sum_probs=17.6

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|.  ..+.++.|..
T Consensus         9 ~~~C~~C~k~f~--~~~~l~~H~~   30 (36)
T 2elv_A            9 LYDCHICERKFK--NELDRDRHML   30 (36)
T ss_dssp             CEECSSSCCEES--SHHHHHHHHT
T ss_pred             CeECCCCCCccC--CHHHHHHHHH
Confidence            488999999994  6677788864

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=92.34  E-value=0.07  Score=26.97  Aligned_cols=21  Identities=24%  Similarity=0.409  Sum_probs=16.6

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|-|++|++.|+  +.+.++.|.
T Consensus         2 ~~~C~~C~k~f~--~~~~l~~H~   22 (29)
T 2m0f_A            2 PLKCRECGKQFT--TSGNLKRHL   22 (29)
T ss_dssp             CEECTTTSCEES--CHHHHHHHH
T ss_pred             CccCCCCCCccC--ChhHHHHHH
Confidence            478999999994  566677775

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.80  E-value=0.074  Score=29.08  Aligned_cols=21  Identities=33%  Similarity=0.660  Sum_probs=16.4

Q ss_pred             cccccCCcceeccCCh-HHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSP-SVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~-SvRK~H~   25 (164)
                      .|.|++|++.|.  +. +.++.|.
T Consensus         9 ~~~C~~C~k~f~--~~~~~L~~H~   30 (37)
T 2elp_A            9 AMKCPYCDFYFM--KNGSDLQRHI   30 (37)
T ss_dssp             CEECSSSSCEEC--SSCHHHHHHH
T ss_pred             CeECCCCChhhc--cCHHHHHHHH
Confidence            488999999994  45 6667776

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=91.02  E-value=0.032  Score=28.69  Aligned_cols=22  Identities=23%  Similarity=0.605  Sum_probs=16.5

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|.  +.+.++.|..
T Consensus         3 ~~~C~~C~k~f~--~~~~l~~H~~   24 (30)
T 2lvr_A            3 PYVCIHCQRQFA--DPGALQRHVR   24 (30)
Confidence            488999999994  4555677753

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.60  E-value=0.077  Score=29.43  Aligned_cols=20  Identities=30%  Similarity=0.630  Sum_probs=16.1

Q ss_pred             cccccCCcceeccCChHHHHhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTH   24 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H   24 (164)
                      .|.|++|++.|.  +.+.++.|
T Consensus         9 ~~~C~~C~k~f~--~~~~L~~H   28 (37)
T 2elm_A            9 LYYCSQCHYSSI--TKNCLKRH   28 (37)
T ss_dssp             EEECSSSSCEEE--CHHHHHHH
T ss_pred             CeECCCCCcccC--CHHHHHHH
Confidence            488999999994  56667777

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=91.55  E-value=0.09  Score=28.62  Aligned_cols=22  Identities=18%  Similarity=0.400  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  +.+.++.|..
T Consensus         2 p~~C~~C~k~F~--~~~~L~~H~~   23 (33)
T 1rim_A            2 KFACPECPKRFM--RSDHLSKHIT   23 (33)
T ss_dssp             CCCCSSSCCCCS--SHHHHHHHHH
T ss_pred             cccCCCCCchhC--CHHHHHHHHH
Confidence            378999999994  6777788863

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=91.40  E-value=0.083  Score=26.58  Aligned_cols=21  Identities=24%  Similarity=0.396  Sum_probs=16.0

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|-|++|++.|.  +.+.++.|.
T Consensus         2 ~~~C~~C~~~f~--~~~~l~~H~   22 (29)
T 2m0e_A            2 EHKCPHCDKKFN--QVGNLKAHL   22 (29)
T ss_dssp             CCCCSSCCCCCC--TTTHHHHHH
T ss_pred             CCcCCCCCcccC--CHHHHHHHH
Confidence            478999999994  455567775

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.29  E-value=0.11  Score=29.81  Aligned_cols=22  Identities=23%  Similarity=0.457  Sum_probs=17.8

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~~   33 (46)
T 2emi_A           12 HYECSECGKAFI--QKSTLSMHQR   33 (46)
T ss_dssp             CEECSSSCCEES--SHHHHHHHHG
T ss_pred             CCCCCCCCcccC--CHHHHHHHHh
Confidence            588999999994  6777788864

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.27  E-value=0.1  Score=28.09  Aligned_cols=21  Identities=29%  Similarity=0.536  Sum_probs=16.7

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|-|++|++.|  .+.+.++.|.
T Consensus         9 ~~~C~~C~k~f--~~~~~l~~H~   29 (36)
T 2elr_A            9 THLCDMCGKKF--KSKGTLKSHK   29 (36)
T ss_dssp             SCBCTTTCCBC--SSHHHHHHHH
T ss_pred             CeecCcCCCCc--CchHHHHHHH
Confidence            58899999999  4566677775

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.20  E-value=0.11  Score=29.67  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=17.9

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~F--~~~~~L~~H~~   33 (44)
T 2epv_A           12 PYECNECGKAF--IWKSLLIVHER   33 (44)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHHG
T ss_pred             CeECCCCCccc--CchHHHHHHHh
Confidence            48899999999  46777788864

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=90.50  E-value=0.04  Score=28.41  Aligned_cols=22  Identities=23%  Similarity=0.381  Sum_probs=16.4

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|.  +.+.++.|..
T Consensus         2 ~~~C~~C~k~f~--~~~~l~~H~~   23 (29)
T 2lvt_A            2 PCQCVMCGKAFT--QASSLIAHVR   23 (29)
Confidence            488999999994  4555677763

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.00  E-value=0.12  Score=29.06  Aligned_cols=22  Identities=27%  Similarity=0.573  Sum_probs=17.9

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        11 ~~~C~~C~k~f--~~~~~L~~H~~   32 (42)
T 2eos_A           11 PYPCEICGTRF--RHLQTLKSHLR   32 (42)
T ss_dssp             CBCCSSSCCCB--SSHHHHHHHTT
T ss_pred             CEECCCCCCcc--CCHHHHHHHHH
Confidence            48899999999  46777788864

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.00  E-value=0.13  Score=28.76  Aligned_cols=22  Identities=18%  Similarity=0.377  Sum_probs=17.8

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        10 ~~~C~~C~k~f~--~~~~L~~H~~   31 (41)
T 2ept_A           10 VYECQECGKSFR--QKGSLTLHER   31 (41)
T ss_dssp             CEECSSSCCEES--SHHHHHHHGG
T ss_pred             CeECCCCCCCcC--CHHHHHHHHH
Confidence            488999999994  6777788864

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.95  E-value=0.11  Score=29.12  Aligned_cols=22  Identities=18%  Similarity=0.454  Sum_probs=17.9

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        11 ~~~C~~C~k~f--~~~~~L~~H~~   32 (42)
T 2en2_A           11 PYKCETCGARF--VQVAHLRAHVL   32 (42)
T ss_dssp             SEECTTTCCEE--SSHHHHHHHTH
T ss_pred             CEeCCCcChhh--CCHHHHHHHHH
Confidence            48899999999  46777788864

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=90.91  E-value=0.12  Score=28.92  Aligned_cols=21  Identities=24%  Similarity=0.494  Sum_probs=17.0

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|-|++|++.|+  +.+.++.|.
T Consensus        11 ~~~C~~C~k~f~--~~~~l~~H~   31 (42)
T 2epc_A           11 PYLCGQCGKSFT--QRGSLAVHQ   31 (42)
T ss_dssp             CEECSSSCCEES--SHHHHHHHH
T ss_pred             CeECCCCCcccC--CHHHHHHHh
Confidence            488999999994  567777775

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.89  E-value=0.12  Score=29.67  Aligned_cols=22  Identities=18%  Similarity=0.409  Sum_probs=17.9

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2emg_A           12 PFICSECGKVFT--HKTNLIIHQK   33 (46)
T ss_dssp             SCBCTTTCCBCS--SHHHHHHHHT
T ss_pred             CEECCccCcccC--CHHHHHHHHH
Confidence            488999999994  6777888864

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=90.21  E-value=0.045  Score=27.71  Aligned_cols=22  Identities=23%  Similarity=0.546  Sum_probs=16.4

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|.  +.+.++.|..
T Consensus         2 p~~C~~C~k~f~--~~~~l~~H~~   23 (26)
T 2lvu_A            2 PYVCERCGKRFV--QSSQLANHIR   23 (26)
Confidence            478999999994  4555677753

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=90.80  E-value=0.12  Score=28.78  Aligned_cols=22  Identities=23%  Similarity=0.578  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus         6 ~~~C~~C~k~f--~~~~~L~~H~~   27 (39)
T 1njq_A            6 SYTCSFCKREF--RSAQALGGHMN   27 (39)
T ss_dssp             SEECTTTCCEE--SSHHHHHHHHH
T ss_pred             ceECCCCCccc--CCHHHHHHHHH
Confidence            48899999999  46777788863

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.79  E-value=0.12  Score=29.67  Aligned_cols=22  Identities=23%  Similarity=0.422  Sum_probs=17.9

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~F--~~~~~L~~H~~   33 (46)
T 2ytp_A           12 HYECSECGKAF--ARKSTLIMHQR   33 (46)
T ss_dssp             CEECSSSCCEE--SSHHHHHHHHT
T ss_pred             CeECCcCCccc--CCHHHHHHHHH
Confidence            48899999999  46777788864

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=90.78  E-value=0.13  Score=28.76  Aligned_cols=22  Identities=18%  Similarity=0.425  Sum_probs=17.6

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        10 ~~~C~~C~k~f--~~~~~L~~H~~   31 (42)
T 2el5_A           10 PYECSECGKAF--NRKDQLISHQR   31 (42)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHHG
T ss_pred             CccCCCcChhh--CCHHHHHHHHH
Confidence            48899999999  46777788863

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.77  E-value=0.12  Score=29.65  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|.|++|++.|+  +.+.++.|.
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~   32 (46)
T 2em3_A           12 PYECKVCSKAFT--QKAHLAQHQ   32 (46)
T ss_dssp             SEECSSSCCEES--SHHHHHHHH
T ss_pred             CeECCCCCcccC--CHHHHHHHH
Confidence            488999999994  677778886

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.72  E-value=0.12  Score=29.92  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~~   33 (46)
T 2eom_A           12 GHRCSDCGKFFL--QASNFIQHRR   33 (46)
T ss_dssp             SCCCSSSCCCCS--SHHHHHHHHH
T ss_pred             CcCCCCCCCeeC--ChHHHHHHHH
Confidence            589999999994  6677777863

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.71  E-value=0.13  Score=29.68  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=18.0

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2eon_A           12 PYKCQVCGKAFR--VSSHLVQHHS   33 (46)
T ss_dssp             SCBCSSSCCBCS--SHHHHHHHTT
T ss_pred             ccCCCCCCcccC--cHHHHHHHHH
Confidence            588999999994  6777888874

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=90.69  E-value=0.12  Score=26.52  Aligned_cols=20  Identities=25%  Similarity=0.589  Sum_probs=15.8

Q ss_pred             cccccCCcceeccCChHHHHhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTH   24 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H   24 (164)
                      .|-|+.|++.|.  +.+.++.|
T Consensus         2 ~~~C~~C~k~f~--~~~~l~~H   21 (30)
T 1paa_A            2 AYACGLCNRAFT--RRDLLIRH   21 (30)
T ss_dssp             CSBCTTTCCBCS--SSHHHHHH
T ss_pred             CcCCcccCcccC--ChHHHHHH
Confidence            488999999994  55666777

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=90.65  E-value=0.12  Score=30.78  Aligned_cols=22  Identities=23%  Similarity=0.439  Sum_probs=17.3

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|.  ..+.++.|..
T Consensus         7 p~~C~~C~k~F~--~~~~L~~H~~   28 (48)
T 3iuf_A            7 PYACDICGKRYK--NRPGLSYHYA   28 (48)
T ss_dssp             CEECTTTCCEES--SHHHHHHHHH
T ss_pred             CEECCCcCcccC--CHHHHHHHhh
Confidence            489999999994  5676777764

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.61  E-value=0.13  Score=29.33  Aligned_cols=22  Identities=18%  Similarity=0.424  Sum_probs=17.7

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2yrj_A           12 PYRCGECGKAFA--QKANLTQHQR   33 (46)
T ss_dssp             CEECSSSCCEES--SHHHHHHHHT
T ss_pred             CeECCCCCCccC--CHHHHHHHHH
Confidence            488999999994  6777788863

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.57  E-value=0.13  Score=29.04  Aligned_cols=22  Identities=23%  Similarity=0.492  Sum_probs=17.6

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (44)
T 2eof_A           12 PYECNECQKAF--NTKSNLMVHQR   33 (44)
T ss_dssp             SEECTTTCCEE--SCHHHHHHHHH
T ss_pred             CeECCCCCccc--CCHhHHHHHHH
Confidence            48899999999  46777788863

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.54  E-value=0.15  Score=29.11  Aligned_cols=22  Identities=23%  Similarity=0.440  Sum_probs=17.9

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2yts_A           12 PYICNECGKSF--IQKSHLNRHRR   33 (46)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHGG
T ss_pred             CEECCCCChhh--CChHHHHHHHH
Confidence            48899999999  46777888864

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.44  E-value=0.14  Score=29.31  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=17.7

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~~   33 (46)
T 2enf_A           12 PYKCNECGKVFT--QNSHLVRHRG   33 (46)
T ss_dssp             SCBCSSSCCBCS--SHHHHHHHHT
T ss_pred             CeECCCCCcccC--CHHHHHHHHH
Confidence            589999999994  6777788863

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.41  E-value=0.13  Score=29.39  Aligned_cols=22  Identities=23%  Similarity=0.442  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2eor_A           12 PYNCEECGKAF--IHDSQLQEHQR   33 (46)
T ss_dssp             SEECTTTCCEE--SSHHHHHHHHH
T ss_pred             CccCCCCCCCc--CCHHHHHHHHH
Confidence            48899999999  46777787863

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.39  E-value=0.12  Score=29.64  Aligned_cols=21  Identities=14%  Similarity=0.327  Sum_probs=16.7

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|.|++|++.|.  +.+.++.|.
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~   32 (46)
T 2en3_A           12 PFQCKECGMNFS--WSCSLFKHL   32 (46)
T ss_dssp             SEECSSSCCEES--SSHHHHHHH
T ss_pred             CeeCcccChhhC--CHHHHHHHH
Confidence            488999999994  556677776

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.36  E-value=0.13  Score=29.59  Aligned_cols=22  Identities=18%  Similarity=0.374  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2emz_A           12 PFKCNECGKGF--GRRSHLAGHLR   33 (46)
T ss_dssp             SCCCSSSCCCC--SSHHHHHHHHH
T ss_pred             CeECCCCCccc--CCHHHHHHHHH
Confidence            58999999999  46777777863

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.35  E-value=0.13  Score=29.59  Aligned_cols=21  Identities=19%  Similarity=0.357  Sum_probs=17.0

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|.|++|++.|+  +.+.++.|.
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~   32 (46)
T 2eoh_A           12 PYECKECRKTFI--QIGHLNQHK   32 (46)
T ss_dssp             SCCCSSSCCCCS--SHHHHHHHH
T ss_pred             CcCCCCcCchhC--CHHHHHHHH
Confidence            488999999994  567777775

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.35  E-value=0.13  Score=29.45  Aligned_cols=22  Identities=18%  Similarity=0.380  Sum_probs=17.7

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~F--~~~~~L~~H~~   33 (45)
T 2epu_A           12 PFECTHCGKSF--RAKGNLVTHQR   33 (45)
T ss_dssp             SEEETTTTEEE--SSHHHHHHHHT
T ss_pred             CccCCCCCCcc--CChHHHHHHHH
Confidence            48899999999  46777788864

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.25  E-value=0.16  Score=29.13  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=17.9

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2eq2_A           12 PYQCNECGKAF--SQTSKLARHQR   33 (46)
T ss_dssp             SSSCCSSCCCC--SSHHHHHHHGG
T ss_pred             CeECCCCCccc--CCHHHHHHHHH
Confidence            58999999999  46777788863

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.24  E-value=0.14  Score=29.43  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~~   33 (46)
T 2enh_A           12 PYECDVCRKAFS--HHASLTQHQR   33 (46)
T ss_dssp             SCBCTTTCCBCS--SSHHHHHHGG
T ss_pred             CcCCCCcCchhC--CHHHHHHHHH
Confidence            588999999994  5666788864

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.24  E-value=0.14  Score=29.48  Aligned_cols=22  Identities=23%  Similarity=0.477  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~~   33 (46)
T 2en9_A           12 LFKCNECKKTFT--QSSSLTVHQR   33 (46)
T ss_dssp             CCBCTTTCCBCS--SHHHHHHHHH
T ss_pred             CEECCccCcccC--CHHHHHHHHH
Confidence            488999999994  6777777763

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.23  E-value=0.14  Score=29.18  Aligned_cols=21  Identities=24%  Similarity=0.703  Sum_probs=17.0

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|.|++|++.|.  +.+.++.|.
T Consensus        10 ~~~C~~C~k~f~--~~~~L~~H~   30 (43)
T 2yrm_A           10 AFFCNECDCRFS--EEASLKRHT   30 (43)
T ss_dssp             CBCCSSSCCCBS--SHHHHHHHH
T ss_pred             CEECCCCCCeeC--ChHHHHHHH
Confidence            489999999994  667777776

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=90.22  E-value=0.13  Score=32.26  Aligned_cols=20  Identities=30%  Similarity=0.600  Sum_probs=17.1

Q ss_pred             cccccCCcceeccCChHHHHhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTH   24 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H   24 (164)
                      ++||+-||+.|  .+.+.+..|
T Consensus         8 ~~~C~~C~IsF--~~l~ty~aH   27 (36)
T 1fu9_A            8 KKYCSTCDISF--NYVKTYLAH   27 (36)
T ss_dssp             CSEETTTTEEC--SSHHHHHHH
T ss_pred             cCeecccccee--hhhHHHhhh
Confidence            68999999999  578888777

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.20  E-value=0.17  Score=29.09  Aligned_cols=22  Identities=18%  Similarity=0.466  Sum_probs=17.9

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2yth_A           12 PFQCEECGKRF--TQNSHLHSHQR   33 (46)
T ss_dssp             SBCCSSSCCCB--SSHHHHHHHGG
T ss_pred             CCCCCCCCccc--CCHHHHHHHHH
Confidence            48899999999  46777788864

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.18  E-value=0.13  Score=29.04  Aligned_cols=22  Identities=18%  Similarity=0.366  Sum_probs=17.6

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (44)
T 2eoj_A           12 PYECCECGKVF--SRKDQLVSHQK   33 (44)
T ss_dssp             SCEETTTTEEC--SSHHHHHHHHT
T ss_pred             CeeCCCCCCcc--CCHHHHHHHHH
Confidence            48899999999  46777788864

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.18  E-value=0.16  Score=28.36  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=17.9

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  +.+.++.|..
T Consensus        11 ~~~C~~C~k~f~--~~~~L~~H~~   32 (42)
T 2ytb_A           11 PYRCDQCGKAFS--QKGSLIVHIR   32 (42)
T ss_dssp             SBCCTTTTCCBS--SHHHHHTTGG
T ss_pred             CeeCCCccchhC--CHHHHHHHHH
Confidence            588999999994  6777788864

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.16  E-value=0.15  Score=29.06  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=17.9

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2ep1_A           12 PYECSDCGKSF--IKKSQLHVHQR   33 (46)
T ss_dssp             SSCCSSSCCCC--SSHHHHHHHHG
T ss_pred             CcCCCCCCchh--CCHHHHHHHHH
Confidence            48899999999  46777788864

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.14  E-value=0.15  Score=28.50  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  +.+.++.|..
T Consensus        10 ~~~C~~C~k~f~--~~~~L~~H~~   31 (42)
T 2yte_A           10 PYSCAECKETFS--DNNRLVQHQK   31 (42)
T ss_dssp             SCBCTTTCCBCS--SHHHHHHHHH
T ss_pred             CeECCCCCCccC--CHHHHHHHHH
Confidence            488999999994  5677777753

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.13  E-value=0.15  Score=29.25  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=17.6

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~~   33 (46)
T 2yti_A           12 PYKCNECGKVFT--QNSHLARHRG   33 (46)
T ss_dssp             TTCCSSSCCCCS--SHHHHHHHHT
T ss_pred             CeECCCCCcccC--ChhHHHHHhH
Confidence            488999999994  6777788863

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.12  E-value=0.16  Score=29.23  Aligned_cols=22  Identities=32%  Similarity=0.579  Sum_probs=17.6

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2em6_A           12 CYKCDVCGKEFS--QSSHLQTHQR   33 (46)
T ss_dssp             CCBCSSSCCBCS--SHHHHHHHHT
T ss_pred             CeECCCCCcccC--CHHHHHHHHH
Confidence            489999999994  6777788863

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.09  E-value=0.15  Score=29.12  Aligned_cols=22  Identities=18%  Similarity=0.415  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2ytf_A           12 PFECSECQKAF--NTKSNLIVHQR   33 (46)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHHH
T ss_pred             CcCCCCCCccc--CCHHHHHHHHH
Confidence            48899999999  46777787763

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.09  E-value=0.16  Score=28.93  Aligned_cols=22  Identities=27%  Similarity=0.609  Sum_probs=18.0

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2eme_A           12 PYVCDYCGKAF--GLSAELVRHQR   33 (46)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHHG
T ss_pred             CeECCCCChhh--CCHHHHHHHHH
Confidence            48899999999  46777888873

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=90.06  E-value=0.17  Score=28.82  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=17.9

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2el4_A           12 PYGCSQCAKTFS--LKSQLIVHQR   33 (46)
T ss_dssp             SEECSSSSCEES--SHHHHHHHGG
T ss_pred             ceECCCCCchhC--CHHHHHHHHH
Confidence            488999999994  6777788864

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.04  E-value=0.18  Score=28.98  Aligned_cols=22  Identities=18%  Similarity=0.412  Sum_probs=18.1

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~F--~~~~~L~~H~~   33 (46)
T 2emf_A           12 HFECTECGKAF--TRKSTLSMHQK   33 (46)
T ss_dssp             CEECSSSCCEE--SCHHHHHHHGG
T ss_pred             CeECCCCCchh--CCHHHHHHHHH
Confidence            48899999999  46777888874

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.01  E-value=0.15  Score=29.30  Aligned_cols=22  Identities=14%  Similarity=0.356  Sum_probs=17.3

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2em2_A           12 PFKCKECGKAFR--QNIHLASHLR   33 (46)
T ss_dssp             SEECSSSCCEES--SHHHHHHHHH
T ss_pred             CEECCcCCchhC--CHHHHHHHHH
Confidence            488999999994  5677777753

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.98  E-value=0.14  Score=29.20  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=17.7

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2eq3_A           12 PYECNQCGKAFS--VRSSLTTHQA   33 (46)
T ss_dssp             SSEETTTTEECS--SHHHHHHHHT
T ss_pred             CeECCCCChhhC--CHHHHHHHHH
Confidence            488999999994  6777788864

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=89.94  E-value=0.15  Score=29.26  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~F--~~~~~L~~H~~   33 (46)
T 2emj_A           12 PFECAECGKSF--SISSQLATHQR   33 (46)
T ss_dssp             SEECSSSSCEE--SSHHHHHHHHH
T ss_pred             CEECCCCCccc--CCHHHHHHHHH
Confidence            48899999999  46777787863

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.93  E-value=0.18  Score=28.59  Aligned_cols=22  Identities=18%  Similarity=0.439  Sum_probs=18.0

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (44)
T 2emb_A           12 RYECSKCQATF--NLRKHLIQHQK   33 (44)
T ss_dssp             SEECTTTCCEE--SCHHHHHHHGG
T ss_pred             CeECCCCCCcc--CCHHHHHHHHH
Confidence            48899999999  46777888874

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.91  E-value=0.15  Score=29.20  Aligned_cols=22  Identities=27%  Similarity=0.452  Sum_probs=17.7

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2eq1_A           12 PYKCNECGKAF--RAHSNLTTHQV   33 (46)
T ss_dssp             CCCCTTTTCCC--SSHHHHHHHHT
T ss_pred             CeECCcCChhh--CCHHHHHHHHH
Confidence            58899999999  46777788864

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.90  E-value=0.17  Score=29.02  Aligned_cols=22  Identities=32%  Similarity=0.449  Sum_probs=17.7

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2ep3_A           12 PYRCAECGKAFT--DRSNLFTHQK   33 (46)
T ss_dssp             SEECSSSCCEES--SHHHHHHHHT
T ss_pred             CeECCCCCchhC--CHHHHHHHHH
Confidence            488999999994  6777788863

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.86  E-value=0.16  Score=28.66  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=17.7

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (44)
T 2en7_A           12 PYVCNECGKAF--RSKSYLIIHTR   33 (44)
T ss_dssp             SSCCTTTCCCC--SSHHHHHHHHT
T ss_pred             CeECCCCCCcc--CCHHHHHHHhh
Confidence            48899999999  46777788863

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.81  E-value=0.16  Score=29.18  Aligned_cols=22  Identities=23%  Similarity=0.360  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2em4_A           12 PYECIECGKAFK--TKSSLICHRR   33 (46)
T ss_dssp             SEECSSSCCEES--SHHHHHHHHH
T ss_pred             CcCCCCCCCccC--CHHHHHHHHH
Confidence            488999999994  5677777753

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.74  E-value=0.16  Score=29.04  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|-|++|++.|+  +.+.++.|.
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~   32 (46)
T 2ytj_A           12 PYICAECGKAFT--IRSNLIKHQ   32 (46)
T ss_dssp             SEECSSSCCEES--SHHHHHHHH
T ss_pred             CeECCCCChhhC--CHHHHHHHH
Confidence            488999999994  677778786

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.68  E-value=0.15  Score=28.99  Aligned_cols=21  Identities=19%  Similarity=0.341  Sum_probs=16.8

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|.|++|++.|.  +.+.++.|.
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~   32 (44)
T 2eou_A           12 TSECQECGKIFR--HSSLLIEHQ   32 (44)
T ss_dssp             CCCCTTTCCCCS--SHHHHHHHH
T ss_pred             CeECCCCCcccC--CHHHHHHHH
Confidence            488999999994  566677775

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.58  E-value=0.17  Score=28.95  Aligned_cols=22  Identities=18%  Similarity=0.377  Sum_probs=17.6

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~~   33 (46)
T 2emy_A           12 PYECHECGKAFS--RKYQLISHQR   33 (46)
T ss_dssp             CEECSSSCCEES--SHHHHHHHHH
T ss_pred             CcCCCCCCcccC--cHHHHHHHHH
Confidence            488999999994  6777788863

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.54  E-value=0.17  Score=29.02  Aligned_cols=22  Identities=18%  Similarity=0.380  Sum_probs=17.8

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2ytt_A           12 PYQCSECGKSF--SGSYRLTQHWI   33 (46)
T ss_dssp             TTCCSSSCCCC--SSHHHHHHHHT
T ss_pred             CeeCCCCCccc--CCHHHHHHHHH
Confidence            58999999999  46777788864

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.50  E-value=0.18  Score=28.91  Aligned_cols=22  Identities=18%  Similarity=0.244  Sum_probs=18.0

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2em5_A           12 SHQCHECGRGF--TLKSHLNQHQR   33 (46)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHHT
T ss_pred             CeECCcCCCcc--CCHHHHHHHHH
Confidence            48899999999  46777888863

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.50  E-value=0.17  Score=28.84  Aligned_cols=22  Identities=23%  Similarity=0.440  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2eow_A           12 PYKCNECGKAFR--ARSSLAIHQA   33 (46)
T ss_dssp             CEECTTSCCEES--SHHHHHHHHH
T ss_pred             CeeccccCChhc--CHHHHHHHHH
Confidence            488999999994  6777788863

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.43  E-value=0.16  Score=29.19  Aligned_cols=21  Identities=19%  Similarity=0.475  Sum_probs=17.0

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|-|++|++.|.  +.+.++.|.
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~   32 (46)
T 2eoz_A           12 PYSCNVCGKAFV--LSAHLNQHL   32 (46)
T ss_dssp             SEEETTTTEEES--SHHHHHHHH
T ss_pred             CeECcccChhhC--CHHHHHHHH
Confidence            488999999994  667777775

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.32  E-value=0.19  Score=28.70  Aligned_cols=22  Identities=14%  Similarity=0.223  Sum_probs=17.6

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2emm_A           12 PHKCNECGKSF--IQSAHLIQHQR   33 (46)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHHH
T ss_pred             CeeCCCCChhh--CCHHHHHHHHH
Confidence            48899999999  46777788863

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.31  E-value=0.16  Score=28.76  Aligned_cols=21  Identities=24%  Similarity=0.475  Sum_probs=16.5

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|-|++|++.|+  +.+.++.|.
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~   32 (44)
T 2yu5_A           12 PFKCSKCDRVFT--QRNYLVQHE   32 (44)
T ss_dssp             SEECSSSSCEES--SSHHHHHHH
T ss_pred             CeECCCCCchhC--CHHHHHHHh
Confidence            488999999994  456667775

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=89.27  E-value=0.22  Score=28.39  Aligned_cols=22  Identities=23%  Similarity=0.406  Sum_probs=18.0

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2em9_A           12 PYNCKECGKSF--RWASCLLKHQR   33 (46)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHGG
T ss_pred             CeECCcccccc--CChHHHHHHHH
Confidence            58899999999  46777888864

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.26  E-value=0.21  Score=28.59  Aligned_cols=22  Identities=18%  Similarity=0.433  Sum_probs=17.8

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2eml_A           12 PYECSVCGKAF--SHRQSLSVHQR   33 (46)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHHG
T ss_pred             CeeCCCcCCcc--CCHHHHHHHHH
Confidence            48899999999  46777788864

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.25  E-value=0.17  Score=28.91  Aligned_cols=22  Identities=14%  Similarity=0.318  Sum_probs=17.7

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2ytg_A           12 PFKCGECGKSYN--QRVHLTQHQR   33 (46)
T ss_dssp             SEECTTTCCEES--SSHHHHTTGG
T ss_pred             CeECCCCCcccC--CHHHHHHHHH
Confidence            589999999994  5677788863

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.24  E-value=0.2  Score=28.67  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=17.9

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2ep0_A           12 PYKCDVCHKSF--RYGSSLTVHQR   33 (46)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHHT
T ss_pred             CeeCcccCccc--CChHHHHHHHH
Confidence            48899999999  46777788864

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=89.24  E-value=0.2  Score=28.80  Aligned_cols=22  Identities=18%  Similarity=0.416  Sum_probs=17.7

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~~   33 (46)
T 2emk_A           12 PYECKECGKAFS--QTTHLIQHQR   33 (46)
T ss_dssp             SCBCSSSCCBCS--CHHHHHHHHH
T ss_pred             ceECCCCCchhC--CHHHHHHHHH
Confidence            489999999994  6777788863

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.19  E-value=0.19  Score=28.85  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=17.7

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~F--~~~~~L~~H~~   33 (46)
T 2eoo_A           12 PYGCNECGKNF--GRHSHLIEHLK   33 (46)
T ss_dssp             CEECSSSCCEE--SSHHHHHHHHH
T ss_pred             CEEccccCccc--CCHHHHHHHHH
Confidence            48899999999  46777788863

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.18  E-value=0.19  Score=28.60  Aligned_cols=21  Identities=24%  Similarity=0.412  Sum_probs=17.3

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|.|++|++.|  .+.+.++.|.
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~   32 (46)
T 2eov_A           12 PYKCSDCGKSF--TWKSRLRIHQ   32 (46)
T ss_dssp             SCBCSSSCCBC--SSHHHHHHHH
T ss_pred             CccCCccChhh--CCHHHHHHHH
Confidence            48899999999  4677778886

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=89.18  E-value=0.21  Score=28.66  Aligned_cols=22  Identities=18%  Similarity=0.422  Sum_probs=17.7

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2el6_A           12 PYKCSQCEKSFS--GKLRLLVHQR   33 (46)
T ss_dssp             SEECSSSSCEES--SHHHHHHHHG
T ss_pred             CeECCCCCcccC--CHHHHHHHHH
Confidence            488999999994  6777788864

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.18  E-value=0.2  Score=28.58  Aligned_cols=22  Identities=18%  Similarity=0.215  Sum_probs=17.7

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2eop_A           12 PHECRECGKSFS--FNSQLIVHQR   33 (46)
T ss_dssp             SCBCTTTCCBCS--SHHHHHHHHT
T ss_pred             CeeCCCCCchhC--CHHHHHHHHH
Confidence            488999999994  6777788864

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.13  E-value=0.2  Score=28.61  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=17.8

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2ene_A           12 PYKCNECGKVF--RHNSYLSRHQR   33 (46)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHHT
T ss_pred             CeECCCCCchh--CChHHHHHHHh
Confidence            48899999999  46777788864

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.13  E-value=0.19  Score=28.82  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=17.1

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|-|++|++.|+  +.+.++.|.
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~   32 (46)
T 2yto_A           12 PYKCSDCGKAFT--RKSGLHIHQ   32 (46)
T ss_dssp             CEECSSSCCEES--SHHHHHHHH
T ss_pred             CEECcccCCccC--CHhHHHHHH
Confidence            488999999994  667777776

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.11  E-value=0.2  Score=28.68  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=17.8

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~~   33 (46)
T 2eq0_A           12 PYKCHECGKVFR--RNSHLARHQL   33 (46)
T ss_dssp             CEECTTTCCEES--SHHHHHHHHT
T ss_pred             CeECCCCCchhC--CHHHHHHHHH
Confidence            488999999994  6777788864

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.09  E-value=0.21  Score=28.48  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=17.9

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~~   33 (47)
T 2epx_A           12 PYECIECGKAFI--QNTSLIRHWR   33 (47)
T ss_dssp             SBCCSSSCCCBS--SHHHHHHHHT
T ss_pred             CEECCccCchhC--ChHHHHHHhH
Confidence            489999999994  6777788865

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=89.08  E-value=0.22  Score=25.11  Aligned_cols=22  Identities=18%  Similarity=0.455  Sum_probs=17.3

Q ss_pred             ccccc--CCcceeccCChHHHHhhhc
Q psy6569           3 KYYCD--YCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCD--YCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|+  .|++.|  .+.+.++.|..
T Consensus         2 ~~~C~~~~C~k~f--~~~~~l~~H~~   25 (29)
T 2ab3_A            2 VYVCHFENCGRSF--NDRRKLNRHKK   25 (29)
T ss_dssp             CEEECSTTTCEEE--SSHHHHHHHHG
T ss_pred             CCCCcCCcCcCcc--CCHHHHHHHHH
Confidence            47899  999999  46777788863

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.05  E-value=0.19  Score=28.72  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=17.9

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2ysp_A           12 PYKCEKCGKGY--NSKFNLDMHQK   33 (46)
T ss_dssp             SEEETTTTEEE--SCHHHHHHHHT
T ss_pred             CeECCCCCCcc--CCHHHHHHHHH
Confidence            48899999999  46777788864

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=89.00  E-value=0.19  Score=29.93  Aligned_cols=21  Identities=29%  Similarity=0.611  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|.|+.|++.|  ...+.++.|.
T Consensus         8 p~~C~~CgK~F--~~~s~L~~H~   28 (36)
T 1fv5_A            8 RFMCLPCGIAF--SSPSTLEAHQ   28 (36)
T ss_dssp             CCEETTTTEEC--SCHHHHHHHH
T ss_pred             CeECCCCCCcc--CCHhHccCcC
Confidence            58999999999  4677778886

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=88.99  E-value=0.22  Score=28.45  Aligned_cols=22  Identities=23%  Similarity=0.522  Sum_probs=17.8

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~~   33 (46)
T 2em0_A           12 TWKCRECDMCFS--QASSLRLHQN   33 (46)
T ss_dssp             CCCCSSSCCCCS--SHHHHHHHGG
T ss_pred             CeECCCCCcccC--CHHHHHHHHH
Confidence            488999999994  6777788864

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.99  E-value=0.24  Score=28.44  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=18.0

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~F--~~~~~L~~H~~   33 (46)
T 2elz_A           12 PYKCEDCGKGY--NRRLNLDMHQR   33 (46)
T ss_dssp             SCBCSSSCCBC--SSHHHHHHHGG
T ss_pred             CeeCcccCchh--CCHHHHHHHHH
Confidence            58899999999  46777788865

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.98  E-value=0.2  Score=28.60  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=17.8

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2ytr_A           12 PYKCNECGKAF--SQTSKLARHQR   33 (46)
T ss_dssp             TTCCTTTCCCC--SSHHHHHHHHT
T ss_pred             CcCCCCCCCcc--CCHHHHHHHHH
Confidence            48899999999  46777788864

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.98  E-value=0.15  Score=28.91  Aligned_cols=22  Identities=23%  Similarity=0.406  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~~   33 (44)
T 2eox_A           12 SYNCNECGKAFT--RIFHLTRHQK   33 (44)
T ss_dssp             CEEETTTTEEES--SSHHHHTTHH
T ss_pred             CeECcccCcccC--CHHHHHHHHH
Confidence            488999999994  5666777863

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.97  E-value=0.23  Score=28.40  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=17.7

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~~   33 (46)
T 2ytn_A           12 PYKCNECGKVFT--QNSHLARHRG   33 (46)
T ss_dssp             SCBCTTTCCBCS--SHHHHHHHGG
T ss_pred             CeECCCCCCeeC--CHHHHHHHhh
Confidence            488999999994  6777788863

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.95  E-value=0.2  Score=28.63  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=17.7

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2ep2_A           12 PYECSICGKSF--TKKSQLHVHQQ   33 (46)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHHH
T ss_pred             CcCCCCCCccc--CCHHHHHHHHH
Confidence            48899999999  46777788863

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.95  E-value=0.19  Score=28.86  Aligned_cols=22  Identities=14%  Similarity=0.449  Sum_probs=17.1

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2eoy_A           12 CFKCNKCEKTFS--CSKYLTQHER   33 (46)
T ss_dssp             CEECSSSCCEES--SSHHHHHHHT
T ss_pred             CEECcCCCCcCC--CHHHHHHHHH
Confidence            488999999994  5666777863

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.93  E-value=0.21  Score=28.34  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=17.6

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  +.+.++.|..
T Consensus        10 ~~~C~~C~k~f~--~~~~L~~H~~   31 (44)
T 2emx_A           10 PFGCSCCEKAFS--SKSYLLVHQQ   31 (44)
T ss_dssp             CEECSSSSCEES--SHHHHHHHHH
T ss_pred             CccCCCCCcccC--CHHHHHHHHH
Confidence            488999999994  6777788863

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.90  E-value=0.2  Score=28.69  Aligned_cols=22  Identities=23%  Similarity=0.451  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2eoq_A           12 PFKCDICGKSF--CGRSRLNRHSM   33 (46)
T ss_dssp             SCCCSSSCCCC--SSHHHHHHHHH
T ss_pred             CcCCCcCCchh--CCHHHHHHHHH
Confidence            48899999999  46777777753

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=88.88  E-value=0.19  Score=30.11  Aligned_cols=22  Identities=14%  Similarity=0.316  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        24 ~~~C~~C~k~f--~~~~~L~~H~~   45 (54)
T 1yui_A           24 PATCPICYAVI--RQSRNLRRHLE   45 (54)
T ss_dssp             CEECTTTCCEE--SSHHHHHHHHH
T ss_pred             CccCCCCCccc--CCHHHHHHHHH
Confidence            48899999999  46777777863

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.86  E-value=0.2  Score=28.86  Aligned_cols=22  Identities=23%  Similarity=0.381  Sum_probs=17.7

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2ytm_A           12 PYKCMECGKAFG--DNSSCTQHQR   33 (46)
T ss_dssp             SSSBTTTTBCCS--SHHHHHHHHH
T ss_pred             CcCCCCCCchhC--CHHHHHHHHH
Confidence            588999999994  6777788863

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.86  E-value=0.23  Score=28.50  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=17.8

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2ytq_A           12 PYGCSECGKAFS--SKSYLIIHMR   33 (46)
T ss_dssp             SCBCSSSCCBCS--CHHHHHHHHT
T ss_pred             CcCCCccChhhC--ChHHHHHHHH
Confidence            488999999994  6777788864

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.85  E-value=0.2  Score=28.66  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=17.6

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~~   33 (46)
T 2emh_A           12 PYICTVCGKAFT--DRSNLIKHQK   33 (46)
T ss_dssp             SEECTTTCCEES--SHHHHHHHHH
T ss_pred             CcCCCCCCchhC--CHHHHHHHHH
Confidence            488999999994  6777788863

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.78  E-value=0.22  Score=28.49  Aligned_cols=22  Identities=14%  Similarity=0.271  Sum_probs=17.9

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2epz_A           12 PFDCIDCGKAFS--DHIGLNQHRR   33 (46)
T ss_dssp             SBCCTTTCCCBS--SHHHHHHHHT
T ss_pred             CeECCCCCceeC--CHHHHHHHHH
Confidence            589999999994  6777788864

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.75  E-value=0.21  Score=28.64  Aligned_cols=22  Identities=18%  Similarity=0.212  Sum_probs=17.7

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2em8_A           12 PYKCVECGKGYK--RRLDLDFHQR   33 (46)
T ss_dssp             SEECSSSCCEES--SHHHHHHHHH
T ss_pred             CeECcccCchhC--CHHHHHHHHH
Confidence            588999999994  6777788864

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.65  E-value=0.2  Score=28.68  Aligned_cols=22  Identities=23%  Similarity=0.546  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2en6_A           12 PYGCNECGKTFS--QKSILSAHQR   33 (46)
T ss_dssp             CEEETTTTEEES--SHHHHHHHHH
T ss_pred             CeECCCCCcccC--chHHHHHHHH
Confidence            488999999994  6777788863

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=88.62  E-value=0.23  Score=28.98  Aligned_cols=22  Identities=14%  Similarity=0.294  Sum_probs=17.8

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (48)
T 2epr_A           12 QVACEICGKIFR--DVYHLNRHKL   33 (48)
T ss_dssp             SEEETTTTEEES--SHHHHHHHGG
T ss_pred             CeeCCCCCcccC--CHHHHHHHHH
Confidence            588999999994  6777788864

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=88.62  E-value=0.23  Score=27.38  Aligned_cols=22  Identities=18%  Similarity=0.425  Sum_probs=17.2

Q ss_pred             cccccC--CcceeccCChHHHHhhhc
Q psy6569           3 KYYCDY--CDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDY--Cdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++  |++.|  .+.+.++.|..
T Consensus         8 ~~~C~~~~C~k~f--~~~~~L~~H~~   31 (37)
T 1va1_A            8 QHICHIQGCGKVY--GKTSHLRAHLR   31 (37)
T ss_dssp             CEECCSTTCCCEE--SCHHHHHHHHH
T ss_pred             CCCCCCCCCCCcc--CCHHHHHHHHH
Confidence            478996  99999  46777788863

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.59  E-value=0.22  Score=28.36  Aligned_cols=21  Identities=19%  Similarity=0.417  Sum_probs=17.1

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|-|++|++.|+  +.+.++.|.
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~   32 (46)
T 2eq4_A           12 LYNCKECGKSFS--RAPCLLKHE   32 (46)
T ss_dssp             CCCBTTTTBCCS--CHHHHHHHH
T ss_pred             CeECCCCCCccC--chHHHHHHH
Confidence            488999999994  677777786

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.56  E-value=0.22  Score=28.44  Aligned_cols=22  Identities=27%  Similarity=0.540  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2ytk_A           12 PYKCNECGKVFT--QNSHLTNHWR   33 (46)
T ss_dssp             SEECSSSCCEES--SHHHHHHHHH
T ss_pred             CEeCCcCCCccC--CHHHHHHHHH
Confidence            488999999994  6777777763

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.49  E-value=0.27  Score=28.07  Aligned_cols=22  Identities=23%  Similarity=0.312  Sum_probs=17.9

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2em7_A           12 PYKCEECGKGF--ICRRDLYTHHM   33 (46)
T ss_dssp             SEECSSSCCEE--SCHHHHHHHGG
T ss_pred             CccCCCccchh--CCHHHHHHHHH
Confidence            48899999999  46777888864

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=88.42  E-value=0.24  Score=28.27  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=17.6

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2ema_A           12 RYKCNECGKVFS--RNSQLSQHQK   33 (46)
T ss_dssp             CEECSSSCCEES--SHHHHHHHHT
T ss_pred             CcCCCCCcchhC--CHHHHHHHHH
Confidence            488999999994  6777788864

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.42  E-value=0.23  Score=28.37  Aligned_cols=22  Identities=18%  Similarity=0.430  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2ytd_A           12 PYKCSECGKAF--HRHTHLNEHRR   33 (46)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHHH
T ss_pred             CeECCCCCCee--CChHHHHHHHH
Confidence            48899999999  46777788853

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.25  E-value=0.25  Score=28.24  Aligned_cols=22  Identities=27%  Similarity=0.449  Sum_probs=17.7

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2emp_A           12 PYMCNECGKAF--SVYSSLTTHQV   33 (46)
T ss_dssp             SEECSSSCCEE--SCHHHHHHHHH
T ss_pred             CeECCCCCchh--CCHHHHHHHHH
Confidence            48899999999  46777788863

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.23  E-value=0.25  Score=28.15  Aligned_cols=22  Identities=23%  Similarity=0.366  Sum_probs=17.6

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2en8_A           12 SHTCDECGKNFC--YISALRIHQR   33 (46)
T ss_dssp             SEECTTTCCEES--SHHHHHHHHT
T ss_pred             CeECCCcCcccC--CHHHHHHHHH
Confidence            488999999994  6777788863

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=87.96  E-value=0.22  Score=28.57  Aligned_cols=22  Identities=18%  Similarity=0.388  Sum_probs=16.9

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2ely_A           12 PFKCVECGKGFS--RRSALNVHHK   33 (46)
T ss_dssp             SBCCSSSCCCBS--STTHHHHHHH
T ss_pred             CcccCccCcccC--CHHHHHHHHH
Confidence            488999999994  5566677763

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.86  E-value=0.28  Score=28.04  Aligned_cols=22  Identities=18%  Similarity=0.468  Sum_probs=17.9

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2en1_A           12 PFKCEECGKRF--TQNSQLHSHQR   33 (46)
T ss_dssp             SEEETTTTEEE--SSHHHHHHHGG
T ss_pred             CeeCCCCCccc--CCHHHHHHHHH
Confidence            48899999999  46777888874

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.86  E-value=0.44  Score=31.99  Aligned_cols=27  Identities=15%  Similarity=0.235  Sum_probs=20.0

Q ss_pred             cccccCCcceeccCChHHHHhhhchhhHHH
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQGRKHKD   32 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~GkKHk~   32 (164)
                      .|.|++|++.|. ++.+.++.|.  +.|..
T Consensus        24 ~~~C~~C~k~f~-~~~~~L~~H~--~~h~~   50 (98)
T 2gqj_A           24 EAVCPTCNVVTR-KTLVGLKKHM--EVCQK   50 (98)
T ss_dssp             CCCCTTTCCCCS-SCSHHHHHHH--HHHHH
T ss_pred             CcCCCCCCCChh-hhHHHHHHHH--HHHcC
Confidence            589999999993 1667788887  34554

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.77  E-value=0.26  Score=28.16  Aligned_cols=21  Identities=14%  Similarity=0.154  Sum_probs=16.9

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|.|++|++.|.  +.+.++.|.
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~   32 (46)
T 2yso_A           12 SHQCRECGEIFF--QYVSLIEHQ   32 (46)
T ss_dssp             CEECTTTCCEES--SHHHHHHHH
T ss_pred             CEEccccChhhC--CHHHHHHHH
Confidence            488999999994  567777775

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.73  E-value=0.26  Score=28.02  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=17.8

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~F--~~~~~L~~H~~   33 (46)
T 2eoe_A           12 PYKCNECGKVF--TQNSHLANHQR   33 (46)
T ss_dssp             SSEETTTTEEC--SSHHHHHHHHG
T ss_pred             CeECCCcChhh--CCHHHHHHHHH
Confidence            58899999999  46777788863

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.54  E-value=0.28  Score=27.99  Aligned_cols=22  Identities=18%  Similarity=0.385  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2enc_A           12 PFKCEECGKGFY--TNSQCYSHQR   33 (46)
T ss_dssp             SEECSSSCCEES--SHHHHHHHHH
T ss_pred             CcCCCCCCCcCC--ChHHHHHHHH
Confidence            488999999994  6777788863

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=87.52  E-value=0.27  Score=30.03  Aligned_cols=20  Identities=20%  Similarity=0.492  Sum_probs=11.3

Q ss_pred             ccccCCcceeccCChHHHHhhh
Q psy6569           4 YYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         4 YYCDYCdk~fthDS~SvRK~H~   25 (164)
                      |.|++|++.|  .+.+.++.|.
T Consensus        41 ~~C~~C~k~f--~~~~~L~~H~   60 (66)
T 2drp_A           41 YPCPFCFKEF--TRKDNMTAHV   60 (66)
T ss_dssp             EECTTTCCEE--SCHHHHHHHH
T ss_pred             eECCCCCCcc--CCHHHHHHHH
Confidence            5566666666  3455555554

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=87.47  E-value=0.28  Score=28.97  Aligned_cols=22  Identities=23%  Similarity=0.608  Sum_probs=14.2

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        29 ~~~C~~C~~~f--~~~~~l~~H~~   50 (57)
T 1bbo_A           29 PYHCTYCNFSF--KTKGNLTKHMK   50 (57)
T ss_dssp             CEECSSSSCEE--SSHHHHHHHHH
T ss_pred             CccCCCCCchh--cCHHHHHHHHH
Confidence            36677777777  35566666653

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.23  E-value=0.27  Score=28.08  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2yu8_A           12 PYKCNECGKVFT--QNSHLARHRR   33 (46)
T ss_dssp             SEECSSSCCEES--SSHHHHHHTH
T ss_pred             CeECCcCCchhC--CHHHHHHHHH
Confidence            488999999994  5666788863

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=87.20  E-value=0.28  Score=28.01  Aligned_cols=22  Identities=18%  Similarity=0.415  Sum_probs=17.3

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|.  ..+.++.|..
T Consensus        10 ~~~C~~C~k~f~--~~~~l~~H~~   31 (45)
T 2epq_A           10 PYSCPVCGLRFK--RKDRMSYHVR   31 (45)
T ss_dssp             SSEETTTTEECS--CHHHHHHHHH
T ss_pred             CCcCCCCCcccC--CHHHHHHHHH
Confidence            589999999994  5677777763

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=87.18  E-value=0.92  Score=29.30  Aligned_cols=22  Identities=27%  Similarity=0.606  Sum_probs=16.4

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        31 ~~~C~~C~k~f--~~~~~L~~H~~   52 (88)
T 1llm_C           31 PFACDICGRKF--ARSDERKRHRD   52 (88)
T ss_dssp             CEECTTTCCEE--SSHHHHHHHHH
T ss_pred             CccCCCCCCcc--CCHHHHHHHHH
Confidence            47788888888  46777777764

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=87.06  E-value=0.29  Score=30.67  Aligned_cols=22  Identities=23%  Similarity=0.422  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        14 ~~~C~~C~k~f--~~~~~L~~H~~   35 (72)
T 1x6e_A           14 PYGCVECGKAF--SRSSILVQHQR   35 (72)
T ss_dssp             CEECSSSCCEE--SSHHHHHHHHH
T ss_pred             CccCCCCCCcc--CCHHHHHHHHH
Confidence            58899999999  46777788864

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=87.03  E-value=0.35  Score=25.16  Aligned_cols=22  Identities=23%  Similarity=0.615  Sum_probs=17.1

Q ss_pred             ccccc--CCcceeccCChHHHHhhhc
Q psy6569           3 KYYCD--YCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCD--YCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|+  +|++.|+  +.+.++.|..
T Consensus         2 p~~C~~~~C~k~f~--~~~~L~~H~~   25 (31)
T 1sp2_A            2 PFMCTWSYCGKRFT--RSDELQRHKR   25 (31)
T ss_dssp             CCBCCSTTCCCBCS--SHHHHHHHHT
T ss_pred             CcCCcCCCCCcccC--CHhHHHHHHH
Confidence            47898  9999994  5777788863

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.98  E-value=0.28  Score=27.89  Aligned_cols=21  Identities=19%  Similarity=0.194  Sum_probs=16.6

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|-|++|++.|.  +.+.++.|.
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~   32 (46)
T 2epw_A           12 PCKCTECGKAFC--WKSQLIMHQ   32 (46)
T ss_dssp             SEECSSSCCEES--SSHHHHHHH
T ss_pred             CeeCCCCCCccC--CHHHHHHHH
Confidence            488999999994  566677776

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=86.80  E-value=0.31  Score=30.29  Aligned_cols=19  Identities=32%  Similarity=0.745  Sum_probs=8.7

Q ss_pred             ccccCCcceeccCChHHHHhh
Q psy6569           4 YYCDYCDTYLTHDSPSVRKTH   24 (164)
Q Consensus         4 YYCDYCdk~fthDS~SvRK~H   24 (164)
                      |.|++|++.|  .+.+.++.|
T Consensus        38 ~~C~~C~~~f--~~~~~L~~H   56 (70)
T 1x5w_A           38 FKCNYCSFDT--KQPSNLSKH   56 (70)
T ss_dssp             EECSSSSCEE--SSHHHHHHH
T ss_pred             EeCCCCCCcc--CCHHHHHHH
Confidence            4455555555  233444444

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=86.62  E-value=0.32  Score=28.67  Aligned_cols=22  Identities=36%  Similarity=0.759  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus         1 p~~C~~C~~~f--~~~~~l~~H~~   22 (57)
T 1bbo_A            1 KYICEECGIRX--KKPSMLKKHIR   22 (57)
T ss_dssp             CCBCTTTCCBC--SSHHHHHHHHH
T ss_pred             CCcCCCCcCcC--CCHHHHHHHHH
Confidence            37899999999  46777788863

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=86.60  E-value=0.33  Score=29.03  Aligned_cols=22  Identities=18%  Similarity=0.510  Sum_probs=16.8

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus         2 ~~~C~~C~~~f--~~~~~l~~H~~   23 (60)
T 2adr_A            2 SFVCEVCTRAF--ARQEHLKRHYR   23 (60)
T ss_dssp             CBCCTTTCCCB--SCHHHHHHHHH
T ss_pred             cCcCCCCcccc--CCHHHHHHHHH
Confidence            47899999998  46677777764

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=86.57  E-value=0.34  Score=28.60  Aligned_cols=22  Identities=23%  Similarity=0.549  Sum_probs=16.7

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus         4 ~~~C~~C~~~f--~~~~~l~~H~~   25 (57)
T 3uk3_C            4 SRECSYCGKFF--RSNYYLNIHLR   25 (57)
T ss_dssp             -CBCTTTCCBC--SCHHHHHHHHH
T ss_pred             CccCCCCcchh--CChHHHHHHHH
Confidence            58899999999  46777777764

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.47  E-value=0.33  Score=30.70  Aligned_cols=21  Identities=14%  Similarity=0.237  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|.|++|++.|  .+.+.++.|.
T Consensus         7 ~~~C~~C~k~f--~~~~~L~~H~   27 (78)
T 2d9h_A            7 GLQCEICGFTC--RQKASLNWHQ   27 (78)
T ss_dssp             CEECSSSCCEE--SSHHHHHHHH
T ss_pred             CeECCCCCCee--CCHHHHHHHH
Confidence            58899999999  4677778886

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=86.47  E-value=0.32  Score=29.65  Aligned_cols=22  Identities=23%  Similarity=0.345  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        10 ~~~C~~C~k~f--~~~~~l~~H~~   31 (66)
T 2drp_A           10 TYRCKVCSRVY--THISNFCRHYV   31 (66)
T ss_dssp             EEECTTTCCEE--SSHHHHHHHHH
T ss_pred             ceECCCCcchh--CCHHHHHHHHH
Confidence            48899999999  46777777753

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=86.38  E-value=0.066  Score=28.89  Aligned_cols=21  Identities=14%  Similarity=0.403  Sum_probs=15.9

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|-|++|++.|+  +.+.++.|.
T Consensus         2 p~~C~~C~k~f~--~~~~L~~H~   22 (32)
T 2kfq_A            2 AFACPACPKRFM--RSDALSKHI   22 (32)
T ss_dssp             CSSSSSSCTTHH--HHHTTSSST
T ss_pred             CCCCCCCCcccC--CHHHHHHHH
Confidence            478999999994  455566775

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=86.27  E-value=0.35  Score=30.56  Aligned_cols=21  Identities=33%  Similarity=0.548  Sum_probs=11.5

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|.|++|++.|  .+.+.++.|.
T Consensus        45 ~~~C~~C~~~f--~~~~~L~~H~   65 (77)
T 2ct1_A           45 KFHCPHCDTVI--ARKSDLGVHL   65 (77)
T ss_dssp             SEECSSSSCEE--SSHHHHHHHH
T ss_pred             ccCCCCCCCcc--CCHHHHHHHH
Confidence            35666666666  2444455554

>4f9c_B Protein DBF4 homolog A; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_B* 4f9b_B* 4f9a_B*

Probab=86.27  E-value=0.29  Score=37.80  Aligned_cols=26  Identities=27%  Similarity=0.540  Sum_probs=21.1

Q ss_pred             ccccCCcceeccCChHHHHhhhchhhHHHHH
Q psy6569           4 YYCDYCDTYLTHDSPSVRKTHCQGRKHKDNV   34 (164)
Q Consensus         4 YYCDYCdk~fthDS~SvRK~H~~GkKHk~NV   34 (164)
                      =||+.|.+.|. |    +.+|+.+.+|++-+
T Consensus        88 GyCE~C~~~y~-~----l~~H~~s~~Hr~fa  113 (144)
T 4f9c_B           88 GYCECCLQKYE-D----LETHLLSEQHRNFA  113 (144)
T ss_dssp             CEETTTTEECS-C----HHHHHHSHHHHHHH
T ss_pred             CCccchhhhhh-h----HHHHcCCHHHHHHH
Confidence            39999999993 3    56899999998544

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=86.09  E-value=0.35  Score=30.28  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=17.9

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        42 ~~~C~~C~~~f--~~~~~L~~H~~   63 (72)
T 1x6e_A           42 PYKCLECGKAF--SQNSGLINHQR   63 (72)
T ss_dssp             CEECSSSCCEE--SSHHHHHHHHH
T ss_pred             CeECCCCCccc--CCHHHHHHHHH
Confidence            48899999999  46777888863

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=86.03  E-value=0.39  Score=29.79  Aligned_cols=22  Identities=18%  Similarity=0.279  Sum_probs=18.2

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus         9 ~~~C~~C~k~f--~~~~~L~~H~~   30 (70)
T 1x5w_A            9 PEKCSECSYSC--SSKAALRIHER   30 (70)
T ss_dssp             SEECSSSSCEE--SSHHHHHHHHG
T ss_pred             CeECCCCCccc--CCHHHHHHHHH
Confidence            58899999999  46777888874

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=85.92  E-value=0.38  Score=28.36  Aligned_cols=22  Identities=18%  Similarity=0.575  Sum_probs=17.6

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        32 ~~~C~~C~~~f--~~~~~l~~H~~   53 (57)
T 3uk3_C           32 PYKCEFCEYAA--AQKTSLRYHLE   53 (57)
T ss_dssp             CEECSSSSCEE--SSHHHHHHHHH
T ss_pred             CcCCCCCcchh--CCHHHHHHHHH
Confidence            48899999999  46777788864

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=85.72  E-value=0.39  Score=29.82  Aligned_cols=20  Identities=20%  Similarity=0.456  Sum_probs=12.2

Q ss_pred             ccccCCcceeccCChHHHHhhh
Q psy6569           4 YYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         4 YYCDYCdk~fthDS~SvRK~H~   25 (164)
                      |.|++|++.|  .+.+.++.|.
T Consensus        50 ~~C~~C~~~f--~~~~~l~~H~   69 (73)
T 1f2i_G           50 FQCRICMRNF--SRSDHLTTHI   69 (73)
T ss_dssp             EECTTTCCEE--SCHHHHHHHH
T ss_pred             eECCCCCchh--CCHHHHHHHH
Confidence            6677777776  3455556564

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=85.67  E-value=0.37  Score=30.45  Aligned_cols=22  Identities=23%  Similarity=0.461  Sum_probs=17.9

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        15 ~~~C~~C~k~f--~~~~~L~~H~~   36 (77)
T 2ct1_A           15 PYECYICHARF--TQSGTMKMHIL   36 (77)
T ss_dssp             SEECTTTCCEE--SCHHHHHHHHH
T ss_pred             CeECCCcCchh--CCHHHHHHHHH
Confidence            48899999999  46777788864

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=85.59  E-value=0.43  Score=24.91  Aligned_cols=22  Identities=27%  Similarity=0.449  Sum_probs=16.9

Q ss_pred             ccccc--CCcceeccCChHHHHhhhc
Q psy6569           3 KYYCD--YCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCD--YCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|+  .|++.|.  +.+.++.|..
T Consensus         3 ~~~C~~~~C~k~f~--~~~~L~~H~~   26 (32)
T 1zfd_A            3 PYSCDHPGCDKAFV--RNHDLIRHKK   26 (32)
T ss_dssp             SBCCCCTTCCCCBS--SSHHHHHHHG
T ss_pred             CCcCcCCCCCCccC--CHHHHHHHHH
Confidence            47899  8999994  5666777864

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=85.59  E-value=0.35  Score=32.22  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=16.2

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|.|++|++.|+  ..+.++.|.
T Consensus        13 py~C~~CgK~F~--~~s~L~~H~   33 (66)
T 2epp_A           13 ILPCGLCGKVFT--DANRLRQHE   33 (66)
T ss_dssp             CCCCTTTCCCCS--CHHHHHHHH
T ss_pred             CcCCCCCCCccC--CHHHHHhhh
Confidence            489999999994  566666665

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=85.10  E-value=0.43  Score=28.58  Aligned_cols=21  Identities=24%  Similarity=0.580  Sum_probs=16.7

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|.|++|++.|.  +.+.++.|.
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~   32 (54)
T 2eps_A           12 PYICQSCGKGFS--RPDHLNGHI   32 (54)
T ss_dssp             CEECSSSCCEES--SHHHHHHHH
T ss_pred             CeECCCCCcccC--CHHHHHHHH
Confidence            488999999994  566677775

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=84.96  E-value=0.4  Score=33.00  Aligned_cols=21  Identities=24%  Similarity=0.509  Sum_probs=12.9

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|.|++|++.|+  +.+.++.|+
T Consensus        56 ~~~C~~C~k~F~--~~~~L~~H~   76 (85)
T 2lv2_A           56 VFPCKYCPATFY--SSPGLTRHI   76 (85)
T ss_dssp             SEECTTSSCEES--SHHHHHHHH
T ss_pred             ccCCCCCCCEeC--CHHHHHHhC
Confidence            366777777773  455556664

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=84.95  E-value=0.41  Score=30.89  Aligned_cols=21  Identities=19%  Similarity=0.621  Sum_probs=15.9

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|-|++|++.|  .+.+.++.|.
T Consensus         4 py~C~~C~k~F--~~~~~L~~H~   24 (60)
T 4gzn_C            4 PFFCNFCGKTY--RDASGLSRHR   24 (60)
T ss_dssp             CEECTTTCCEE--SSHHHHHHHH
T ss_pred             CccCCCCCCEe--CCHHHHHHHH
Confidence            47889999988  3566677776

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.40  E-value=0.49  Score=29.85  Aligned_cols=21  Identities=19%  Similarity=0.759  Sum_probs=16.7

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|.|++|++.|  .+.+.++.|.
T Consensus        38 ~~~C~~C~k~f--~~~~~L~~H~   58 (78)
T 2d9h_A           38 RFPCEFCGKRF--EKPDSVAAHR   58 (78)
T ss_dssp             CEECTTTCCEE--SSHHHHHHHH
T ss_pred             ccCCCCCCchh--CCHHHHHHHH
Confidence            58999999999  4566667775

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=83.86  E-value=0.55  Score=25.51  Aligned_cols=21  Identities=19%  Similarity=0.439  Sum_probs=16.5

Q ss_pred             cccccC--CcceeccCChHHHHhhh
Q psy6569           3 KYYCDY--CDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDY--Cdk~fthDS~SvRK~H~   25 (164)
                      .|-|++  |++.|+  +.+.++.|.
T Consensus         6 ~~~C~~~~C~k~f~--~~~~L~~H~   28 (38)
T 1bhi_A            6 PFLCTAPGCGQRFT--NEDHLAVHK   28 (38)
T ss_dssp             CEECCCTTTCCEES--SHHHHHHHH
T ss_pred             ceECCCCCCCcccC--CHHHHHHHH
Confidence            478995  999994  677778886

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.67  E-value=0.45  Score=31.96  Aligned_cols=21  Identities=19%  Similarity=0.341  Sum_probs=16.6

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|.|++|++.|  .+.+.++.|.
T Consensus        54 ~~~C~~C~k~F--~~~~~L~~H~   74 (98)
T 2gqj_A           54 ALKCQHCRKQF--KSKAGLNYHT   74 (98)
T ss_dssp             HHSCSSSCCCC--SCHHHHHHHH
T ss_pred             CEECCCCCCcc--CCHHHHHHHH
Confidence            48899999999  4667677775

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=83.42  E-value=0.62  Score=29.37  Aligned_cols=22  Identities=27%  Similarity=0.561  Sum_probs=16.2

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        18 ~~~C~~C~~~f--~~~~~l~~H~~   39 (77)
T 2cot_A           18 RYKCDECGKSF--SHSSDLSKHRR   39 (77)
T ss_dssp             SSBCSSSCCBC--SCHHHHHHHHT
T ss_pred             CEECCCCCccc--CCHHHHHHHHH
Confidence            57888888888  45666777764

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=83.42  E-value=0.57  Score=27.96  Aligned_cols=22  Identities=23%  Similarity=0.529  Sum_probs=17.8

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        30 ~~~C~~C~~~f--~~~~~l~~H~~   51 (60)
T 2adr_A           30 PYPCGLCNRAF--TRRDLLIRHAQ   51 (60)
T ss_dssp             SEECTTTCCEE--SSHHHHHHHHT
T ss_pred             CccCCCCCCcc--CCHHHHHHHHH
Confidence            48899999999  46777788853

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=83.28  E-value=0.57  Score=29.34  Aligned_cols=22  Identities=23%  Similarity=0.457  Sum_probs=17.0

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|+.|++.|  .+.+.++.|..
T Consensus        17 ~~~C~~C~k~f--~~~~~l~~H~~   38 (74)
T 2lce_A           17 PYKCDRCQASF--RYKGNLASHKT   38 (74)
T ss_dssp             SBCCTTSSCCB--SCHHHHHHHHH
T ss_pred             CeECCCCCcee--CCHHHHHHHHH
Confidence            58899999999  46677777763

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=83.19  E-value=0.56  Score=29.37  Aligned_cols=21  Identities=33%  Similarity=0.768  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|-|++|++.|  .+.+.++.|.
T Consensus        45 ~~~C~~C~k~f--~~~~~L~~H~   65 (74)
T 2lce_A           45 PYRCNICGAQF--NRPANLKTHT   65 (74)
T ss_dssp             SEECTTTCCEE--SCHHHHHHHH
T ss_pred             CEECCCCCchh--CCHHHHHHHH
Confidence            48899999999  4677778886

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=82.81  E-value=0.59  Score=29.46  Aligned_cols=22  Identities=23%  Similarity=0.559  Sum_probs=17.0

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        15 ~~~C~~C~~~f--~~~~~l~~H~~   36 (86)
T 1x6h_A           15 PYACSHCDKTF--RQKQLLDMHFK   36 (86)
T ss_dssp             CEECSSSSCEE--SSHHHHHHHHH
T ss_pred             CCcCCCCCCcc--CCHHHHHHHHH
Confidence            48899999999  45666777764

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=82.73  E-value=0.63  Score=29.59  Aligned_cols=22  Identities=27%  Similarity=0.641  Sum_probs=14.3

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        62 ~~~C~~C~~~f--~~~~~l~~H~~   83 (90)
T 1a1h_A           62 PFACDICGRKF--ARSDERKRHTK   83 (90)
T ss_dssp             CEECTTTCCEE--SSHHHHHHHHG
T ss_pred             CccCCCCCchh--CCHHHHHHHHH
Confidence            36677777777  35666666764

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=82.05  E-value=0.68  Score=29.83  Aligned_cols=21  Identities=24%  Similarity=0.564  Sum_probs=14.9

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|.|++|++.|  .+.+.++.|+
T Consensus        65 ~~~C~~C~~~f--~~~~~L~~H~   85 (95)
T 2yt9_A           65 PYICQSCGKGF--SRPDHLNGHI   85 (95)
T ss_dssp             SBCCSSSCCCB--SSHHHHHHHH
T ss_pred             ceECCCccchh--CCHHHHHHHH
Confidence            47788888888  3566666675

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.00  E-value=0.72  Score=27.31  Aligned_cols=21  Identities=19%  Similarity=0.265  Sum_probs=16.6

Q ss_pred             cccccC--CcceeccCChHHHHhhh
Q psy6569           3 KYYCDY--CDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDY--Cdk~fthDS~SvRK~H~   25 (164)
                      -|-|++  |++.|+  +.+.++.|.
T Consensus         9 p~~C~~~~C~k~F~--~~~~L~~H~   31 (38)
T 2eln_A            9 LLKCPTDGCDYSTP--DKYKLQAHL   31 (38)
T ss_dssp             CEECSSSSCCCEES--CHHHHHHHH
T ss_pred             CCCCCCCCCCCccC--CHHHHHHHH
Confidence            388987  999994  577778886

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=81.97  E-value=0.73  Score=29.66  Aligned_cols=22  Identities=18%  Similarity=0.335  Sum_probs=18.3

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  ..+.++.|..
T Consensus        32 p~~C~~C~k~F~--~~~~L~~H~~   53 (60)
T 4gzn_C           32 PRSCPECGKCFR--DQSEVNRHLK   53 (60)
T ss_dssp             CEECTTTCCEES--SHHHHHHHGG
T ss_pred             CeECCCCCCCcC--CHHHHHHHhC
Confidence            489999999994  6777888874

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=81.82  E-value=0.7  Score=29.82  Aligned_cols=20  Identities=20%  Similarity=0.391  Sum_probs=11.7

Q ss_pred             ccccCCcceeccCChHHHHhhh
Q psy6569           4 YYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         4 YYCDYCdk~fthDS~SvRK~H~   25 (164)
                      |.|++|++.|  .+.+.++.|+
T Consensus        65 ~~C~~C~~~f--~~~~~l~~H~   84 (96)
T 2dmd_A           65 FKCQICPYAS--RNSSQLTVHL   84 (96)
T ss_dssp             EECSSSSCEE--SSHHHHHHHH
T ss_pred             ccCCCCCCcc--CCHHHHHHHH
Confidence            5666666666  3455555554

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=81.81  E-value=0.66  Score=28.87  Aligned_cols=20  Identities=25%  Similarity=0.399  Sum_probs=10.8

Q ss_pred             ccccCCcceeccCChHHHHhhh
Q psy6569           4 YYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         4 YYCDYCdk~fthDS~SvRK~H~   25 (164)
                      |.|++|++.|  .+.+.++.|.
T Consensus        58 ~~C~~C~~~f--~~~~~l~~H~   77 (82)
T 2kmk_A           58 HKCQVCGKAF--SQSSNLITHS   77 (82)
T ss_dssp             EECTTTSCEE--SSHHHHHHHH
T ss_pred             CcCCCcchhh--CChHHHHHHH
Confidence            5566666666  3445455554

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=81.77  E-value=0.79  Score=28.88  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=18.0

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        46 ~~~C~~C~~~f--~~~~~L~~H~~   67 (77)
T 2cot_A           46 PYKCDECGKAF--IQRSHLIGHHR   67 (77)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHGG
T ss_pred             CeeCCCCCCcc--CCHHHHHHHHH
Confidence            48899999999  46777888874

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=81.74  E-value=0.74  Score=29.01  Aligned_cols=21  Identities=14%  Similarity=0.466  Sum_probs=17.0

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|.|++|++.|  .+.+.++.|.
T Consensus        47 ~~~C~~C~~~f--~~~~~L~~H~   67 (86)
T 1x6h_A           47 AFVCSKCGKTF--TRRNTMARHA   67 (86)
T ss_dssp             CEECSSSCCEE--SCHHHHHHHH
T ss_pred             ceECCCCCChh--CCHHHHHHHH
Confidence            48899999999  4677777775

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=81.06  E-value=1.4  Score=29.25  Aligned_cols=22  Identities=18%  Similarity=0.353  Sum_probs=14.5

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        37 ~~~C~~C~~~f--~~~~~l~~H~~   58 (110)
T 2csh_A           37 PYGCGVCGKKF--KMKHHLVGHMK   58 (110)
T ss_dssp             SEECTTTSCEE--SSSHHHHHHHT
T ss_pred             CccCCCCCccc--CCHHHHHHHHH
Confidence            36788888877  34555667754

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=80.85  E-value=0.46  Score=27.76  Aligned_cols=21  Identities=14%  Similarity=0.308  Sum_probs=15.2

Q ss_pred             ccccc--CCcceeccCChHHHHhhh
Q psy6569           3 KYYCD--YCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCD--YCdk~fthDS~SvRK~H~   25 (164)
                      .|.|+  .|++.|.  ..+.++.|.
T Consensus        18 ~~~C~~~~C~k~F~--~~~~L~~H~   40 (47)
T 1ncs_A           18 TFECLFPGCTKTFK--RRYNIRSHI   40 (47)
T ss_dssp             EEECCCTTCCCEEC--SSSSHHHHH
T ss_pred             CeECCCCCCCCccC--CHHHHHHHH
Confidence            47897  5999995  445567775

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=80.66  E-value=0.73  Score=31.62  Aligned_cols=22  Identities=18%  Similarity=0.404  Sum_probs=18.0

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        28 ~h~C~~Cgk~F--~~~~~L~~H~~   49 (85)
T 2lv2_A           28 CHLCPVCGESF--ASKGAQERHLR   49 (85)
T ss_dssp             TEECTTSCCEE--SSHHHHHHHHH
T ss_pred             CEECCCCCCCc--CcHHHHhhhhh
Confidence            47899999999  46777888874

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=80.30  E-value=0.91  Score=29.27  Aligned_cols=22  Identities=23%  Similarity=0.455  Sum_probs=17.1

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|.|++|++.|  .+.+.++.|..
T Consensus         8 ~~~C~~C~~~f--~~~~~l~~H~~   29 (96)
T 2dmd_A            8 PHKCEVCGKCF--SRKDKLKTHMR   29 (96)
T ss_dssp             CCCBTTTTBCC--CCHHHHHHHGG
T ss_pred             CeECCCCCCcc--CCHHHHHHHHH
Confidence            57899999988  46777788864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	164
d2vrda1	61	g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human	3e-37
d1zu1a1	72	g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF34	8e-06
d1zr9a1	67	g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593	4e-04

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 3e-37
 Identities = 52/61 (85%), Positives = 57/61 (93%)

Query: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAG 60
          MPK+YCDYCDTYLTHDSPSVRKTHC GRKHK+NVK YYQKWMEEQAQ+LID TTAA++ G
Sbjct: 1  MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60

Query: 61 K 61
          K
Sbjct: 61 K 61

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 72

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 39.6 bits (92), Expect = 8e-06
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 2/41 (4%)

Query: 5  YCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQ 45
           C  C   L  +S   +  H Q RKH + V+ Y      E 
Sbjct: 34 QCKVCSAVLISESQ--KLAHYQSRKHANKVRRYMAINQGED 72

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 4e-04
 Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 1  MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVK 35
             + C  C  Y    +    KTH + + HK  +K
Sbjct: 13 GGLHRCLACARYFIDST--NLKTHFRSKDHKKRLK 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	99.93
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	98.46
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	97.95
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	97.74
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	95.89
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	95.37
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	92.95
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	92.93
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	91.49
d1fu9a_	36	U-shaped transcription factor, different fingers {	91.08
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	90.02
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	89.95
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	89.93
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	89.92
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	89.83
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	89.83
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	89.62
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	89.34
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	89.29
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	89.05
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	88.62
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	88.51
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	87.81
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	87.78
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	87.63
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	87.51
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	85.78
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	84.73
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	83.81
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	83.46
d1pg5b2	56	Aspartate carbamoyltransferase, Regulatory-chain,	80.66

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.3e-28  Score=169.10  Aligned_cols=61  Identities=85%  Similarity=1.449  Sum_probs=59.8

Q ss_pred             CCcccccCCcceeccCChHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy6569           1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQNLIDATTAAYKAGK   61 (164)
Q Consensus         1 MPRYYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkryY~~~~eeqaq~iiD~~tra~~~G~   61 (164)
                      ||||||||||+||||||+++||+|++|++|++||++||++|.++++|+++|+++++|++|+
T Consensus         1 MpryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~yy~~~~~~~aq~l~d~~~~~~~~~k   61 (61)
T d2vrda1           1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGK   61 (61)
T ss_dssp             CCSCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHHTSSSSSSCCCSHHHHHHHSSSSCC
T ss_pred             CCchhhhhhcchhccCChhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            8999999999999999999999999999999999999999999999999999999999986

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.9e-08  Score=67.25  Aligned_cols=32  Identities=28%  Similarity=0.445  Sum_probs=29.4

Q ss_pred             cccccCCcceeccCChHHHHhhhchhhHHHHHHH
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKF   36 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkr   36 (164)
                      .|||..|+++|  .|..++++|+.+++|+++|++
T Consensus        15 qfYCv~C~K~F--~se~~l~~H~ksKkHKrrvk~   46 (67)
T d1zr9a1          15 LHRCLACARYF--IDSTNLKTHFRSKDHKKRLKQ   46 (67)
T ss_dssp             CSEETTTTEEC--SSHHHHHHHTTCHHHHHHHHH
T ss_pred             EEecccccCcc--CCHHHHHHHHcccHHHHHHHH
Confidence            58999999999  689999999999999988875

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.95  E-value=2.6e-06  Score=56.48  Aligned_cols=33  Identities=27%  Similarity=0.618  Sum_probs=29.8

Q ss_pred             cccccCCcceeccCChHHHHhhhchhhHHHHHHHH
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFY   37 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkry   37 (164)
                      ..||+.|+.||  +|..+..+|-.|++|.+|+++.
T Consensus        21 nk~C~lCn~~F--ns~~~AqsHY~GK~H~K~lk~~   53 (55)
T d1zu1a2          21 SKCCPVCNMTF--SSPVVAESHYIGKTHIKNLRLR   53 (55)
T ss_dssp             TTEETTTTEEC--SSHHHHHHHHTSHHHHHHHHHH
T ss_pred             hhhhhhhhccc--CCHHHHHHHhhhhHHHHHHHHh
Confidence            46999999999  6899999999999999998764

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.74  E-value=8.7e-06  Score=56.34  Aligned_cols=35  Identities=34%  Similarity=0.533  Sum_probs=32.2

Q ss_pred             ccccCCcceeccCChHHHHhhhchhhHHHHHHHHHHH
Q psy6569           4 YYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQK   40 (164)
Q Consensus         4 YYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkryY~~   40 (164)
                      -||+.|+..|  -+.|-|.+|-.|+||.+||++||.-
T Consensus        33 ~~CkvC~a~L--~seSQriaHYeskkHa~kvr~yf~~   67 (72)
T d1zu1a1          33 TQCKVCSAVL--ISESQKLAHYQSRKHANKVRRYMAI   67 (72)
T ss_dssp             SEETTTTEEC--CSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             hhHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999  5888899999999999999999974

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0016  Score=41.69  Aligned_cols=37  Identities=19%  Similarity=0.322  Sum_probs=31.0

Q ss_pred             CcccccCCcceeccCChHHHHhhhchhhHHHHHHHHHHH
Q psy6569           2 PKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQK   40 (164)
Q Consensus         2 PRYYCDYCdk~fthDS~SvRK~H~~GkKHk~NVkryY~~   40 (164)
                      |+--|.||++-.+ ...|+ ++|+-.++|+.+|+.++.+
T Consensus         5 p~~eC~lC~vKYs-~~~Sv-rdHiFskqHI~~Vk~~v~~   41 (48)
T d2yrka1           5 TKPECTLCGVKYS-ARLSI-RDHIFSKQHISKVRETVGS   41 (48)
T ss_dssp             CCSCCTTTTCCCC-SSSCH-HHHHTSHHHHHHHHHTTCS
T ss_pred             CcccCcccceeee-eecch-HhhhhhHHHHHHHHHHHHh
Confidence            4567999999995 55666 8999999999999988754

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0036  Score=36.04  Aligned_cols=23  Identities=35%  Similarity=0.699  Sum_probs=20.0

Q ss_pred             cccccCCcceeccCChHHHHhhhch
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQG   27 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~G   27 (164)
                      ||.|+||++.-  ..+|+.+.|++.
T Consensus         1 kYvC~~Cg~~C--~KPSvL~KHIRs   23 (28)
T d1bboa1           1 KYICEECGIRA--KKPSMLKKHIRT   23 (28)
T ss_dssp             CCBCTTTCCBC--SSHHHHHHHHHH
T ss_pred             CccccccCccc--CCHHHHHHHHHH
Confidence            79999999997  689999998753

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.95  E-value=0.022  Score=33.37  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      -|.|++|++.|+  ..+.++.|..
T Consensus         8 P~~C~~C~k~F~--~~~~L~~H~~   29 (36)
T d2ct1a2           8 PYECYICHARFT--QSGTMKMHIL   29 (36)
T ss_dssp             SEECTTTCCEES--CHHHHHHHHH
T ss_pred             CEeCCCCccccc--chHHHHHHcc
Confidence            488999999994  5666788864

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.93  E-value=0.025  Score=33.22  Aligned_cols=25  Identities=20%  Similarity=0.436  Sum_probs=19.3

Q ss_pred             cccccCCcceeccCChHHHHhhhchhhHH
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQGRKHK   31 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~GkKHk   31 (164)
                      -|.|++|++.|+  ..+.++.|..  .|.
T Consensus         7 Py~C~~C~k~F~--~~~~L~~H~r--~Ht   31 (35)
T d1srka_           7 PFVCRICLSAFT--TKANCARHLK--VHT   31 (35)
T ss_dssp             CEECSSSCCEES--SHHHHHHHHG--GGT
T ss_pred             cccCCCCCCccc--ChHHHHHHcc--ccC
Confidence            489999999995  5677788873  454

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=91.49  E-value=0.044  Score=30.75  Aligned_cols=21  Identities=19%  Similarity=0.524  Sum_probs=16.7

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      -|-|++|++.|+  ..+.++.|.
T Consensus         2 p~~C~~C~k~F~--~~~~L~~H~   22 (29)
T d2adra1           2 SFVCEVCTRAFA--RQEHLKRHY   22 (29)
T ss_dssp             CBCCTTTCCCBS--CHHHHHHHH
T ss_pred             cCCCCCCCCCCC--CchHccccc
Confidence            488999999994  566677776

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.08  E-value=0.042  Score=33.00  Aligned_cols=20  Identities=30%  Similarity=0.600  Sum_probs=17.0

Q ss_pred             cccccCCcceeccCChHHHHhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTH   24 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H   24 (164)
                      .-||+-||+.|  ++.+.++.|
T Consensus         8 ~rYC~~CDI~F--n~~~T~~aH   27 (36)
T d1fu9a_           8 KKYCSTCDISF--NYVKTYLAH   27 (36)
T ss_dssp             CSEETTTTEEC--SSHHHHHHH
T ss_pred             hhHHhhCCcee--hhHHHHHHH
Confidence            35999999999  588888887

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.02  E-value=0.07  Score=30.78  Aligned_cols=21  Identities=24%  Similarity=0.434  Sum_probs=16.7

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      .|-|++|++.|+  ..+.++.|.
T Consensus         7 py~C~~Cgk~F~--~~~~L~~H~   27 (33)
T d1x6ea1           7 PYGCVECGKAFS--RSSILVQHQ   27 (33)
T ss_dssp             CEECSSSCCEES--SHHHHHHHH
T ss_pred             CeeCCCCCCEeC--chHHhHhhc
Confidence            589999999994  566677775

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.95  E-value=0.064  Score=30.14  Aligned_cols=22  Identities=18%  Similarity=0.422  Sum_probs=17.0

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  ..+.++.|..
T Consensus         2 py~C~~C~k~F~--~~s~L~~H~r   23 (29)
T d1sp1a_           2 KFACPECPKRFM--RSDHLSKHIK   23 (29)
T ss_dssp             CSCCTTTTCCCS--CSHHHHHHHH
T ss_pred             CEECCcCCCeec--chHHhhhhcC
Confidence            589999999995  4556677763

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.93  E-value=0.073  Score=29.76  Aligned_cols=21  Identities=19%  Similarity=0.441  Sum_probs=15.8

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      -|-|++|++.|+  ..+.++.|.
T Consensus         3 Py~C~~C~k~F~--~~~~L~~H~   23 (28)
T d1a1ia2           3 PFQCRICMRNFS--RSDHLTTHI   23 (28)
T ss_dssp             CEECTTTCCEES--CHHHHHHHH
T ss_pred             CccCCCCcCEec--ccccccccC
Confidence            489999999995  455556664

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.92  E-value=0.07  Score=31.78  Aligned_cols=21  Identities=24%  Similarity=0.580  Sum_probs=16.7

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      -|-|++|++.|+  ..+.++.|.
T Consensus         5 py~C~~Cgk~F~--~~~~L~~H~   25 (39)
T d2epsa1           5 PYICQSCGKGFS--RPDHLNGHI   25 (39)
T ss_dssp             CEECSSSCCEES--SHHHHHHHH
T ss_pred             CccCCCCCCCcC--ChHHhhccC
Confidence            589999999994  566677775

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.83  E-value=0.075  Score=29.97  Aligned_cols=22  Identities=23%  Similarity=0.529  Sum_probs=17.6

Q ss_pred             cccccC--CcceeccCChHHHHhhhc
Q psy6569           3 KYYCDY--CDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDY--Cdk~fthDS~SvRK~H~~   26 (164)
                      .|.|+|  |++.|+  +.+.++.|..
T Consensus         2 p~~C~~~gC~k~F~--~~~~L~~H~r   25 (29)
T d1a1ia1           2 PYACPVESCDRRFS--RSADLTRHIR   25 (29)
T ss_dssp             CEECCSTTCCCEES--SHHHHHHHTH
T ss_pred             CeECCCCCCCcEEC--chhHhhhhcC
Confidence            489999  999994  6777788863

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.83  E-value=0.079  Score=30.83  Aligned_cols=21  Identities=19%  Similarity=0.429  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      -|-|++|++.|+  ..+.++.|.
T Consensus        11 Py~C~~C~k~F~--~~~~L~~H~   31 (37)
T d1p7aa_          11 PFQCPDCDRSFS--RSDHLALHR   31 (37)
T ss_dssp             SBCCTTTCCCBS--SHHHHHHHH
T ss_pred             CeEeCCCCCEec--CHHHHHHHH
Confidence            489999999994  577778886

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.62  E-value=0.081  Score=29.89  Aligned_cols=22  Identities=18%  Similarity=0.538  Sum_probs=17.7

Q ss_pred             cccccC--CcceeccCChHHHHhhhc
Q psy6569           3 KYYCDY--CDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDY--Cdk~fthDS~SvRK~H~~   26 (164)
                      .|.|+|  |++.|+  ..+.++.|..
T Consensus         2 p~~C~~~gCgk~F~--~~~~L~~H~r   25 (30)
T d1ubdc3           2 PFQCTFEGCGKRFS--LDFNLRTHVR   25 (30)
T ss_dssp             CEECCSTTCCCEES--CHHHHHHHHH
T ss_pred             CccCCCCCCCceEC--cHHHcCcccc
Confidence            489999  999994  6777788873

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.34  E-value=0.092  Score=30.63  Aligned_cols=22  Identities=27%  Similarity=0.576  Sum_probs=17.3

Q ss_pred             cccccCCcceeccCChHHHHhhhc
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~   26 (164)
                      .|-|++|++.|+  ..+.++.|..
T Consensus        12 py~C~~CgK~F~--~~s~L~~H~r   33 (38)
T d2cota2          12 RYKCDECGKSFS--HSSDLSKHRR   33 (38)
T ss_dssp             SSBCSSSCCBCS--CHHHHHHHHT
T ss_pred             CEecCCCCceee--CHHHHHHhCc
Confidence            589999999994  5676777753

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.29  E-value=0.091  Score=30.92  Aligned_cols=21  Identities=29%  Similarity=0.857  Sum_probs=18.1

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      -|.|+||=+|.  .|.++++.|.
T Consensus         7 LyiCEfCLKYm--ks~~~l~RH~   27 (33)
T d1m36a_           7 LYLCEFCLKYM--KSRTILQQHM   27 (33)
T ss_dssp             CEECSSSCCEE--SCHHHHHHHH
T ss_pred             eeeehhhhhhh--CCHHHHHHHH
Confidence            38899999999  6888888885

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.05  E-value=0.1  Score=29.76  Aligned_cols=21  Identities=29%  Similarity=0.662  Sum_probs=16.7

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      -|-||.|++.|.  ....||.|.
T Consensus         3 Pf~C~~CgrkFA--rsderkRH~   23 (28)
T d1a1ia3           3 PFACDICGRKFA--RSDERKRHT   23 (28)
T ss_dssp             CEECTTTCCEES--SHHHHHHHH
T ss_pred             Ccccchhhhhhh--cchhhhhhh
Confidence            378999999994  566778775

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.62  E-value=0.078  Score=30.36  Aligned_cols=26  Identities=23%  Similarity=0.635  Sum_probs=22.2

Q ss_pred             ccccCCcceeccCChHHHHhhhchhhHH
Q psy6569           4 YYCDYCDTYLTHDSPSVRKTHCQGRKHK   31 (164)
Q Consensus         4 YYCDYCdk~fthDS~SvRK~H~~GkKHk   31 (164)
                      |-|.+|+-.|  .+.-....|..++.|.
T Consensus         2 y~C~~CnF~F--KTKGNLTKHmkSKaH~   27 (29)
T d1bboa2           2 YHCTYCNFSF--KTKGNLTKHMKSKAHS   27 (29)
T ss_dssp             EECSSSSCEE--SSHHHHHHHHHSSSSC
T ss_pred             cccceeeeeE--eeccchhHhhhhhhhc
Confidence            7899999999  5777788899888874

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.51  E-value=0.099  Score=30.07  Aligned_cols=25  Identities=36%  Similarity=0.697  Sum_probs=18.6

Q ss_pred             cccccCCcceeccCChHHHHhhhchhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQGRK   29 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~GkK   29 (164)
                      -|.|.||+-... | .|..|+|+..+.
T Consensus         2 py~cqyc~yrsa-d-ssnlkthiktkh   26 (30)
T d1klra_           2 TYQCQYCEFRSA-D-SSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCSSSSCCCS-C-SHHHHHHHHHHT
T ss_pred             Cccccccccccc-c-chhhhhhhhccc
Confidence            488999998873 5 455799987653

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.81  E-value=0.12  Score=29.85  Aligned_cols=21  Identities=24%  Similarity=0.564  Sum_probs=16.8

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      -|-|++|++.|+  ..+.++.|.
T Consensus         8 Py~C~~C~k~F~--~~~~L~~H~   28 (36)
T d1x6ha2           8 PYACSHCDKTFR--QKQLLDMHF   28 (36)
T ss_dssp             CEECSSSSCEES--SHHHHHHHH
T ss_pred             CEECCCCCCCcC--CHhHHHHhC
Confidence            488999999995  566677776

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.78  E-value=0.12  Score=29.62  Aligned_cols=22  Identities=27%  Similarity=0.476  Sum_probs=17.2

Q ss_pred             cccccC--CcceeccCChHHHHhhhc
Q psy6569           3 KYYCDY--CDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDY--Cdk~fthDS~SvRK~H~~   26 (164)
                      .|-|+|  |++.|+  ..+.++.|..
T Consensus         3 P~~C~~pgC~k~F~--r~~~L~~H~r   26 (32)
T d1zfda_           3 PYSCDHPGCDKAFV--RNHDLIRHKK   26 (32)
T ss_dssp             SBCCCCTTCCCCBS--SSHHHHHHHG
T ss_pred             CeECcCCCCCCeeC--CHHHHHHHhh
Confidence            489999  999995  5666777753

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.63  E-value=0.12  Score=29.19  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=16.7

Q ss_pred             cccccC--CcceeccCChHHHHhhh
Q psy6569           3 KYYCDY--CDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDY--Cdk~fthDS~SvRK~H~   25 (164)
                      .|-|+|  |++.|+  ..+.++.|.
T Consensus         2 p~~C~~~gCgk~F~--~~~~L~~H~   24 (30)
T d2glia3           2 PHKCTFEGCRKSYS--RLENLKTHL   24 (30)
T ss_dssp             CCCCCSTTCCCCCS--SHHHHHHHH
T ss_pred             CeeCCCCCCCceEC--ChhHhhhhc
Confidence            488999  999995  566667776

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.51  E-value=0.14  Score=28.40  Aligned_cols=20  Identities=25%  Similarity=0.360  Sum_probs=15.0

Q ss_pred             ccccCCcceeccCChHHHHhhh
Q psy6569           4 YYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         4 YYCDYCdk~fthDS~SvRK~H~   25 (164)
                      |-|+.|++.|+  ..+.+..|.
T Consensus         3 y~C~eCgK~F~--~~s~L~~Hq   22 (26)
T d1x6ea2           3 YKCLECGKAFS--QNSGLINHQ   22 (26)
T ss_dssp             EECSSSCCEES--SHHHHHHHH
T ss_pred             ccCCCCcCeec--cCcccccCc
Confidence            78999999994  455556664

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.78  E-value=0.097  Score=29.40  Aligned_cols=21  Identities=24%  Similarity=0.692  Sum_probs=15.6

Q ss_pred             cccccC--CcceeccCChHHHHhhh
Q psy6569           3 KYYCDY--CDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDY--Cdk~fthDS~SvRK~H~   25 (164)
                      -|.|+|  |++.|+  ..+.++.|.
T Consensus         2 Pf~C~~~gC~K~F~--~~~~L~~H~   24 (28)
T d1ubdc4           2 PYVCPFDGCNKKFA--QSTNLKSHI   24 (28)
T ss_dssp             CCCCCSTTCCCCCS--STTTTHHHH
T ss_pred             CcCCCCCCcCCcCC--CHHHHHHHH
Confidence            488999  999996  344456665

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.73  E-value=0.24  Score=27.98  Aligned_cols=22  Identities=18%  Similarity=0.560  Sum_probs=17.0

Q ss_pred             cccccC--CcceeccCChHHHHhhhc
Q psy6569           3 KYYCDY--CDTYLTHDSPSVRKTHCQ   26 (164)
Q Consensus         3 RYYCDY--Cdk~fthDS~SvRK~H~~   26 (164)
                      .|.|+|  |++.|+  ..+.++.|..
T Consensus         2 pf~C~~~~C~k~F~--~~~~L~~H~r   25 (31)
T d1sp2a_           2 PFMCTWSYCGKRFT--RSDELQRHKR   25 (31)
T ss_dssp             CCBCCSTTCCCBCS--SHHHHHHHHT
T ss_pred             cCCCcCCCCCcCcC--ChhHhhhhcC
Confidence            488976  999995  5677788874

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.81  E-value=0.14  Score=31.30  Aligned_cols=21  Identities=14%  Similarity=0.452  Sum_probs=15.9

Q ss_pred             cccccC--CcceeccCChHHHHhhh
Q psy6569           3 KYYCDY--CDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDY--Cdk~fthDS~SvRK~H~   25 (164)
                      .|-|+|  |++.|+  ..+.++.|.
T Consensus        18 py~C~~~~C~k~F~--~~~~L~~H~   40 (47)
T d1ncsa_          18 TFECLFPGCTKTFK--RRYNIRSHI   40 (47)
T ss_dssp             EEECCCTTCCCEEC--SSSSHHHHH
T ss_pred             CeECCcCCCCcccc--CchHHHhhc
Confidence            588999  999995  445567775

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.46  E-value=0.27  Score=29.42  Aligned_cols=21  Identities=24%  Similarity=0.594  Sum_probs=16.9

Q ss_pred             cccccCCcceeccCChHHHHhhh
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHC   25 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~   25 (164)
                      +|.|.+|++.|  .|..+.--|-
T Consensus         5 ~~~C~~C~k~F--~s~qALGGH~   25 (37)
T d1njqa_           5 SYTCSFCKREF--RSAQALGGHM   25 (37)
T ss_dssp             SEECTTTCCEE--SSHHHHHHHH
T ss_pred             ccCCCCCCCcc--CCcccccchH
Confidence            68999999999  5666666675

>d1pg5b2 g.41.7.1 (B:105-160) Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
family: Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
domain: Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=80.66  E-value=0.25  Score=31.46  Aligned_cols=22  Identities=27%  Similarity=0.656  Sum_probs=15.3

Q ss_pred             cccccCCcceeccCChHHHHhhhch
Q psy6569           3 KYYCDYCDTYLTHDSPSVRKTHCQG   27 (164)
Q Consensus         3 RYYCDYCdk~fthDS~SvRK~H~~G   27 (164)
                      +|-|.||++.++   .....+|+.|
T Consensus        35 ~lrC~YCe~~~~---~~~I~~~ll~   56 (56)
T d1pg5b2          35 KMRCEYCETIID---ENEIMSQILG   56 (56)
T ss_dssp             EEEETTTCCEEE---HHHHHHHHTC
T ss_pred             EEEeeCCCCEec---HHHHHHHhcC
Confidence            578999999994   3334555544