Psyllid ID: psy6570
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 713 | 2.2.26 [Sep-21-2011] | |||||||
| P98157 | 4543 | Low-density lipoprotein r | yes | N/A | 0.652 | 0.102 | 0.346 | 6e-75 | |
| Q07954 | 4544 | Prolow-density lipoprotei | yes | N/A | 0.643 | 0.101 | 0.332 | 3e-68 | |
| Q91ZX7 | 4545 | Prolow-density lipoprotei | yes | N/A | 0.645 | 0.101 | 0.333 | 2e-67 | |
| Q9NZR2 | 4599 | Low-density lipoprotein r | no | N/A | 0.638 | 0.098 | 0.311 | 4e-52 | |
| Q9JI18 | 4599 | Low-density lipoprotein r | no | N/A | 0.639 | 0.099 | 0.309 | 5e-52 | |
| Q924X6 | 996 | Low-density lipoprotein r | no | N/A | 0.315 | 0.225 | 0.378 | 2e-43 | |
| Q98931 | 917 | Low-density lipoprotein r | no | N/A | 0.312 | 0.243 | 0.375 | 3e-43 | |
| Q14114 | 963 | Low-density lipoprotein r | no | N/A | 0.315 | 0.233 | 0.365 | 5e-42 | |
| P98156 | 873 | Very low-density lipoprot | no | N/A | 0.322 | 0.263 | 0.371 | 1e-41 | |
| P35953 | 873 | Very low-density lipoprot | no | N/A | 0.340 | 0.278 | 0.361 | 1e-41 |
| >sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1 OS=Gallus gallus GN=LRP1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 282 bits (722), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 189/546 (34%), Positives = 264/546 (48%), Gaps = 81/546 (14%)
Query: 22 LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEP 81
+S L PRG+AVDWV N+YWTD+G + I V+ ++G ++TL++ ++EP+ I ++P
Sbjct: 3953 ISGLKMPRGIAVDWVAGNIYWTDSG---RDVIEVAQMKGENRKTLISGMIDEPHAIVVDP 4009
Query: 82 LSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIE 141
L G M+W++ G P+I A++DG + LV +NIQWPTG+ +DY ++RLYWAD K I
Sbjct: 4010 LRGTMYWSDWGNHPKIETAAMDGTLRETLVQDNIQWPTGLAVDYHNERLYWADAKLSVIG 4069
Query: 142 SINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNL 201
SI LNG D V + P+ +++FED +Y TY N I KI+KFG+ L + L
Sbjct: 4070 SIRLNGTDPVVAIDNKKGLSHPFSIDIFEDYIYGVTYINNRIFKIHKFGHKSVTNLTSGL 4129
Query: 202 NRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGKMS 261
N A+DV++ + KQ VTN CD K C LC+ PS C CP
Sbjct: 4130 NHATDVVLYHQYKQPE-VTNPCDRKKCEW--LCLLSPSGPVCTCP--------------- 4171
Query: 262 CKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDC-NHGT 320
+G + TC+ + S S V TC L C N G+
Sbjct: 4172 --------------NGKRLDNGTCVL---------IPSPTASAVVPTTDTCDLVCLNGGS 4208
Query: 321 CEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGA 380
C + C CQ + G C+ +N C N G+C P C C +TG+
Sbjct: 4209 CFLNARKQAKCRCQPRYNGERCQ-INQCSDYCQNGGLC---TASPSGMPTCRCPTGFTGS 4264
Query: 381 RCESRICENKCHNGGTCI---ATTQTCVCPPGFTGDTC--QQCLNLKCQNGGVCVNKTTG 435
RC+ ++C N CHN G+C C CPP F GD C QQC N C+N GVC G
Sbjct: 4265 RCDQQVCTNYCHNNGSCTVNQGNQPNCRCPPTFIGDRCQYQQCFNY-CENNGVCQMSRDG 4323
Query: 436 L-ECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSG 494
+ +C CP + G CQ ++C C G+C+I +C C +G
Sbjct: 4324 VKQCRCPPQFEGAQCQDNKCSR-CQEGKCNINRQSGDV------------SCICPDGKIA 4370
Query: 495 PKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNV--CKCPSQYTGRRC-ECAVGDTSCASL 551
P C+ Y CLNGGTC + K + C CP + TG RC E VG+
Sbjct: 4371 PSCLTCDSY---------CLNGGTCSISDKTQLPECLCPLEVTGMRCEEFIVGEQQSGRT 4421
Query: 552 ANKCTP 557
A+ P
Sbjct: 4422 ASIVIP 4427
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Endocytic receptor involved in endocytosis and in phagocytosis of apoptotic cells. Involved in cellular lipid homeostasis. Involved in the plasma clearance of chylomicron remnants and activated LRPAP1 (alpha 2-macroglobulin), as well as the local metabolism of complexes between plasminogen activators and their endogenous inhibitors. Gallus gallus (taxid: 9031) |
| >sp|Q07954|LRP1_HUMAN Prolow-density lipoprotein receptor-related protein 1 OS=Homo sapiens GN=LRP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 260 bits (664), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 180/541 (33%), Positives = 255/541 (47%), Gaps = 82/541 (15%)
Query: 11 RVKREMNLKTV---LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLL 67
R +R+++ +S L PRG+A+DWV N+YWTD+G + I V+ ++G ++TL+
Sbjct: 3940 RHRRQIDRGVTHLNISGLKMPRGIAIDWVAGNVYWTDSG---RDVIEVAQMKGENRKTLI 3996
Query: 68 NTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPS 127
+ ++EP+ I ++PL G M+W++ G P+I A++DG + LV +NIQWPTG+ +DY +
Sbjct: 3997 SGMIDEPHAIVVDPLRGTMYWSDWGNHPKIETAAMDGTLRETLVQDNIQWPTGLAVDYHN 4056
Query: 128 QRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKIN 187
+RLYWAD K I SI LNG D V ++ P+ ++VFED +Y TY N + KI+
Sbjct: 4057 ERLYWADAKLSVIGSIRLNGTDPIVAADSKRGLSHPFSIDVFEDYIYGVTYINNRVFKIH 4116
Query: 188 KFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHTCLCPD 247
KFG+S L L+ ASDV++ ++KQ VTN CD K C LC+ PS C CP+
Sbjct: 4117 KFGHSPLVNLTGGLSHASDVVLYHQHKQPE-VTNPCDRKKCEW--LCLLSPSGPVCTCPN 4173
Query: 248 HLTEELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNVTSGKMSCKVA 307
G + TC + V S
Sbjct: 4174 -----------------------------GKRLDNGTC---------VPVPSPTPPPDAP 4195
Query: 308 PARTCYLDC-NHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPE 366
TC L C N G+C + P C CQ + G CE ++ C N G C P
Sbjct: 4196 RPGTCNLQCFNGGSCFLNARRQPKCRCQPRYTGDKCE-LDQCWEHCRNGGTC---AASPS 4251
Query: 367 PTYKCHCAPSYTGARCESRICENKCHNGGTCI---ATTQTCVCPPGFTGDTCQ--QCLNL 421
C C +TG +C ++C C N TC C C PGF GD CQ QC
Sbjct: 4252 GMPTCRCPTGFTGPKCTQQVCAGYCANNSTCTVNQGNQPQCRCLPGFLGDRCQYRQCSGY 4311
Query: 422 KCQNGGVCVNKTTG-LECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSG 480
C+N G C G +C C ++ G C+ ++C C+ G C +
Sbjct: 4312 -CENFGTCQMAADGSRQCRCTAYFEGSRCEVNKCSR-CLEGACVVNKQSGDV-------- 4361
Query: 481 KKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNN-VCKCPSQYTGRRC 539
TC C +G P C+ G+ C NGG+C NSK C+CP TG RC
Sbjct: 4362 ----TCNCTDGRVAPSCLTCVGH---------CSNGGSCTMNSKMMPECQCPPHMTGPRC 4408
Query: 540 E 540
E
Sbjct: 4409 E 4409
|
Functions as a receptor for Pseudomonas aeruginosa exotoxin A. Homo sapiens (taxid: 9606) |
| >sp|Q91ZX7|LRP1_MOUSE Prolow-density lipoprotein receptor-related protein 1 OS=Mus musculus GN=Lrp1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (657), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 182/546 (33%), Positives = 257/546 (47%), Gaps = 86/546 (15%)
Query: 11 RVKREMNLKTV---LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLL 67
R +R+++ +S L PRG+A+DWV N+YWTD+G + I V+ ++G ++TL+
Sbjct: 3941 RHRRQIDRGVTHLNISGLKMPRGIAIDWVAGNVYWTDSG---RDVIEVAQMKGENRKTLI 3997
Query: 68 NTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPS 127
+ ++EP+ I ++PL G M+W++ G P+I A++DG + LV +NIQWPTG+ +DY +
Sbjct: 3998 SGMIDEPHAIVVDPLRGTMYWSDWGNHPKIETAAMDGTLRETLVQDNIQWPTGLAVDYHN 4057
Query: 128 QRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKIN 187
+RLYWAD K I SI LNG D V ++ P+ ++VFED +Y TY N + KI+
Sbjct: 4058 ERLYWADAKLSVIGSIRLNGTDPIVAADSKRGLSHPFSIDVFEDYIYGVTYINNRVFKIH 4117
Query: 188 KFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHTCLCPD 247
KFG+S L L+ ASDV++ ++KQ VTN CD K C LC+ PS C CP+
Sbjct: 4118 KFGHSPLINLTGGLSHASDVVLYHQHKQPE-VTNPCDRKKCEW--LCLLSPSGPVCTCPN 4174
Query: 248 HLTEELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNVTSGKMSCKVA 307
G + TC + V S
Sbjct: 4175 -----------------------------GKRLDNGTC---------VPVPSPTPPPDAP 4196
Query: 308 PARTCYLDC-NHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPE 366
TC L C N G+C + P C CQ + G CE ++ C N G C P
Sbjct: 4197 RPGTCTLQCFNGGSCFLNARRQPKCRCQPRYTGDKCE-LDQCWEYCHNGGTC---AASPS 4252
Query: 367 PTYKCHCAPSYTGARCESRICENKCHNGGTCI---ATTQTCVCPPGFTGDTCQ--QCLNL 421
C C +TG +C +++C C N TC C C PGF GD CQ QC
Sbjct: 4253 GMPTCRCPTGFTGPKCTAQVCAGYCSNNSTCTVNQGNQPQCRCLPGFLGDRCQYRQCSGF 4312
Query: 422 KCQNGGVCVNKTTG-LECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSG 480
C+N G C G +C C ++ G C+ ++C C+ G C +
Sbjct: 4313 -CENFGTCQMAADGSRQCRCTVYFEGPRCEVNKCSR-CLQGACVVNKQTGDV-------- 4362
Query: 481 KKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCT--CLNGGTCIPNSKNN-VCKCPSQYTGR 537
TC C +G P C+ TC C NGG+C NSK C+CP TG
Sbjct: 4363 ----TCNCTDGRVAPSCL-----------TCIDHCSNGGSCTMNSKMMPECQCPPHMTGP 4407
Query: 538 RCECAV 543
RCE V
Sbjct: 4408 RCEEQV 4413
|
Functions as a receptor for Vibrio cholerae cholix toxin and for Pseudomonas aeruginosa exotoxin A. Mus musculus (taxid: 10090) |
| >sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-related protein 1B OS=Homo sapiens GN=LRP1B PE=1 SV=2 | Back alignment and function description |
|---|
Score = 206 bits (525), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 171/549 (31%), Positives = 241/549 (43%), Gaps = 94/549 (17%)
Query: 11 RVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRS------------SNNIMVSTL 58
R KR+ N + PR +AVDWV N+YWTD +I V L
Sbjct: 3954 REKRQANSGLICPEFKRPRDIAVDWVAGNIYWTDHSRMHWFSYYTTHWTSLRYSINVGQL 4013
Query: 59 EGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWP 118
G LL EPY IA+ P G M+WT +G I A++DG + LV N+Q P
Sbjct: 4014 NGPNCTRLLTNMAGEPYAIAVNPKRGMMYWTVVGDHSHIEEAAMDGTLRRILVQKNLQRP 4073
Query: 119 TGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTY 178
TG+ +DY S+R+YWAD + I S+ +G + V ++ P+++++FED +Y +
Sbjct: 4074 TGLAVDYFSERIYWADFELSIIGSVLYDGSNSVVSVSSKQGLLHPHRIDIFEDYIYGAGP 4133
Query: 179 RTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLP 238
+ N + ++ KFG+ LA N+++ VLI KQ ++ N C D C LC+ P
Sbjct: 4134 K-NGVFRVQKFGHGSVEYLALNIDKTKGVLISHRYKQL-DLPNPCLDLACE--FLCLLNP 4189
Query: 239 SSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNVT 298
S TC+CP+ G + TC D L ++
Sbjct: 4190 SGATCVCPE-----------------------------GKYLINGTCN-DDSLLDD---- 4215
Query: 299 SGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMC 358
S K++C+ N G C ++ D C C ++ G CE VN+ C N G C
Sbjct: 4216 SCKLTCE-----------NGGRCILNEKGDLRCHCWPSYSGERCE-VNHCSNYCQNGGTC 4263
Query: 359 YPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQT---CVCPPGFTGDTC 415
P + PT C CA +TG C +CE+ C NGGTCI T C C P +TGD C
Sbjct: 4264 VPSVL-GRPT--CSCALGFTGPNCGKTVCEDFCQNGGTCIVTAGNQPYCHCQPEYTGDRC 4320
Query: 416 QQCL-NLKCQNGGVCVNKTTG-LECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCM 473
Q + + C N C G +EC CP Y G C+ +C C G C I
Sbjct: 4321 QYYVCHHYCVNSESCTIGDDGSVECVCPTRYEGPKCEVDKCVR-CHGGHCIINKDSEDIF 4379
Query: 474 CSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNN--VCKCP 531
C+ C NG C GY C NGGTC + + N VC C
Sbjct: 4380 CN------------CTNGKIASSCQLCDGY---------CYNGGTCQLDPETNVPVCLCS 4418
Query: 532 SQYTGRRCE 540
+ ++G +CE
Sbjct: 4419 TNWSGTQCE 4427
|
Potential cell surface proteins that bind and internalize ligands in the process of receptor-mediated endocytosis. Homo sapiens (taxid: 9606) |
| >sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related protein 1B OS=Mus musculus GN=Lrp1b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (524), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 170/550 (30%), Positives = 237/550 (43%), Gaps = 94/550 (17%)
Query: 10 TRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRS------------SNNIMVST 57
R KR+ N + PR +AVDWV N+YWTD +I V
Sbjct: 3953 AREKRQANSGLICPEFKRPRDIAVDWVAGNVYWTDHSRMHWFSYYTTHWTSLRYSINVGQ 4012
Query: 58 LEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQW 117
L G LL EPY IA+ P G M+WT +G I A++DG + LV N+Q
Sbjct: 4013 LNGPNCTRLLTNMAGEPYAIAVNPKRGMMYWTVIGDHSHIEEAAMDGTLRRVLVQKNLQR 4072
Query: 118 PTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFST 177
PTG+T+D+ +R+YWAD + I S+ +G V ++ P++++VFED +Y +
Sbjct: 4073 PTGLTVDHFGERIYWADFELSIIGSVLYDGSSPVVSVSSKQGLLHPHRIDVFEDYIYGAG 4132
Query: 178 YRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQSALCINL 237
+ N I ++ KFG+ VLA +++ +L+ KQ N+ N C D C LC+
Sbjct: 4133 PK-NGIFRVQKFGHGSVEVLALGVDKTKSILVSHRYKQL-NLPNPCLDLSC--DFLCLLN 4188
Query: 238 PSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNV 297
PS TC+CP+ K TC+ D L
Sbjct: 4189 PSGATCICPEG--------------KYMMNGTCHDD--------------------SLLD 4214
Query: 298 TSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGM 357
S K++C+ N G C ++ D C C ++ G CE VN+ C N G
Sbjct: 4215 DSCKLTCE-----------NGGRCILNEKGDLRCHCWPSYSGGRCE-VNHCSNYCQNGGT 4262
Query: 358 CYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQT---CVCPPGFTGDT 414
C P T PT C CA +TG C +CE+ CHNGG+C+ T C C +TGD
Sbjct: 4263 CIPS-TLGRPT--CICALGFTGPNCGKAVCEDSCHNGGSCVVTAGNQPYCHCQADYTGDR 4319
Query: 415 CQQCL-NLKCQNGGVCVNKTTG-LECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKC 472
CQ + + C N C G +EC CP Y G C+ +C C G C I
Sbjct: 4320 CQYYVCHHYCVNSESCTIGNDGSVECVCPTRYEGPKCEIDKCVR-CHGGHCIINKDNEDI 4378
Query: 473 MCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCI--PNSKNNVCKC 530
C+ C NG C GY C NGGTC P + VC C
Sbjct: 4379 FCN------------CTNGKIASSCQLCDGY---------CYNGGTCQLDPETSIPVCVC 4417
Query: 531 PSQYTGRRCE 540
+ ++G +CE
Sbjct: 4418 STNWSGTQCE 4427
|
Potential cell surface proteins that bind and internalize ligands in the process of receptor-mediated endocytosis. Mus musculus (taxid: 10090) |
| >sp|Q924X6|LRP8_MOUSE Low-density lipoprotein receptor-related protein 8 OS=Mus musculus GN=Lrp8 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 137/238 (57%), Gaps = 13/238 (5%)
Query: 21 VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80
+ LH P G+AVDWV K++YWTD+G ++ I V+T +GR++ TL + L+EP IA++
Sbjct: 525 IDEQLHSPEGLAVDWVHKHIYWTDSGNKT---ISVATTDGRRRCTLFSRELSEPRAIAVD 581
Query: 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTI 140
PL G M+W++ G + +I A ++G ++ LV +NI+WP GIT+D SQRLYW D K +
Sbjct: 582 PLRGFMYWSDWGFQAKIEKAGLNGADRQTLVSDNIEWPNGITLDLLSQRLYWVDSKLHQL 641
Query: 141 ESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANN 200
SI+ NG +R ++ + D P+ + VFED ++++ I N+ + +LA N
Sbjct: 642 SSIDFNGGNRKMLIFSTDFLSHPFGVAVFEDKVFWTDLENEAIFSANRLNGLEIAILAEN 701
Query: 201 LNRASDVLILQENKQAHNVTNHCDDKPCHQSA---LCINLP--SSH----TCLCPDHL 249
LN D++I E KQ + CD LC+ P SSH TC CPD +
Sbjct: 702 LNNPHDIVIFHELKQP-KAADACDLSAQPNGGCEYLCLPAPQISSHSPKYTCACPDTM 758
|
Cell surface receptor for Reelin (RELN) and apolipoprotein E (apoE)-containing ligands. LRP8 participates in transmitting the extracellular Reelin signal to intracellular signaling processes, by binding to DAB1 on its cytoplasmic tail. Reelin acts via both the VLDL receptor (VLDLR) and LRP8 to regulate DAB1 tyrosine phosphorylation and microtubule function in neurons. LRP8 has higher affinity for Reelin than VLDLR. LRP8 is thus a key component of the Reelin pathway which governs neuronal layering of the forebrain during embryonic brain development. Binds the endoplasmic reticulum resident receptor-associated protein (RAP). Binds dimers of beta 2-glycoprotein I and may be involved in the suppression of platelet aggregation in the vasculature. Highly expressed in the initial segment of the epididymis, where it affects the functional expression of clusterin and phospholipid hydroperoxide glutathione peroxidase (PHGPx), two proteins required for sperm maturation. May also function as an endocytic receptor. Mus musculus (taxid: 10090) |
| >sp|Q98931|LRP8_CHICK Low-density lipoprotein receptor-related protein 8 OS=Gallus gallus GN=LRP8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (449), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 139/240 (57%), Gaps = 17/240 (7%)
Query: 21 VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80
+ S L+ P GVA+DWV KN+YWTD+G ++ I V+T +G ++RT+ N+ L+EP IA++
Sbjct: 506 IDSQLNSPEGVAIDWVHKNIYWTDSGNKT---ISVATADGSRRRTVFNSDLSEPRAIAVD 562
Query: 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTI 140
P M+W++ G K +I A ++G + LV +NI+WP GIT+D +QRLYW D K ++
Sbjct: 563 PTRRFMYWSDWGDKAKIEKAGLNGVGRQVLVSDNIEWPNGITLDLLNQRLYWVDSKLHSL 622
Query: 141 ESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANN 200
I+ NG +R V+ + D+ P+ L VFED ++++ I N+ D +VLA N
Sbjct: 623 SCIDFNGSNREVLISSIDDLSHPFGLAVFEDRVFWTDLENEAIFSANRLSGLDISVLAEN 682
Query: 201 LNRASDVLILQENKQAHNVTNHCDDKPCHQSA---LCINLPSSH--------TCLCPDHL 249
LN D+++ E KQ + C+ P LC LP+ H TC CPD++
Sbjct: 683 LNNPHDIVVFHELKQP-KAPDSCELSPQPNGGCEYLC--LPAPHISPRSPKFTCACPDNM 739
|
Cell surface receptor for Reelin (RELN) and apolipoprotein E (apoE)-containing ligands. Also binds alpha2-macroglobulin. LRP8 participates in transmitting the extracellular Reelin signal to intracellular signaling processes, by binding to DAB1 on its cytoplasmic tail. Reelin acts via both the VLDL receptor (VLDLR) and LRP8 to regulate DAB1 tyrosine phosphorylation and microtubule function in neurons. LRP8 has higher affinity for Reelin than VLDLR. LRP8 is thus a key component of the Reelin pathway which governs neuronal layering of the forebrain during embryonic brain development. Gallus gallus (taxid: 9031) |
| >sp|Q14114|LRP8_HUMAN Low-density lipoprotein receptor-related protein 8 OS=Homo sapiens GN=LRP8 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 173 bits (438), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 138/238 (57%), Gaps = 13/238 (5%)
Query: 21 VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80
+ LH P G+AVDWV K++YWTD+G ++ I V+T++G ++RTL + L+EP IA++
Sbjct: 492 IDEQLHSPEGLAVDWVHKHIYWTDSGNKT---ISVATVDGGRRRTLFSRNLSEPRAIAVD 548
Query: 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTI 140
PL G M+W++ G + +I + ++G ++ LV +NI+WP GIT+D SQRLYW D K +
Sbjct: 549 PLRGFMYWSDWGDQAKIEKSGLNGVDRQTLVSDNIEWPNGITLDLLSQRLYWVDSKLHQL 608
Query: 141 ESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANN 200
SI+ +G +R + + D P+ + VFED ++++ I N+ + ++LA N
Sbjct: 609 SSIDFSGGNRKTLISSTDFLSHPFGIAVFEDKVFWTDLENEAIFSANRLNGLEISILAEN 668
Query: 201 LNRASDVLILQENKQAHNVTNHCDDKPCHQSA---LCINLP--SSH----TCLCPDHL 249
LN D++I E KQ + C+ LC+ P SSH TC CPD +
Sbjct: 669 LNNPHDIVIFHELKQPR-APDACELSVQPNGGCEYLCLPAPQISSHSPKYTCACPDTM 725
|
Cell surface receptor for Reelin (RELN) and apolipoprotein E (apoE)-containing ligands. LRP8 participates in transmitting the extracellular Reelin signal to intracellular signaling processes, by binding to DAB1 on its cytoplasmic tail. Reelin acts via both the VLDL receptor (VLDLR) and LRP8 to regulate DAB1 tyrosine phosphorylation and microtubule function in neurons. LRP8 has higher affinity for Reelin than VLDLR. LRP8 is thus a key component of the Reelin pathway which governs neuronal layering of the forebrain during embryonic brain development. Binds the endoplasmic reticulum resident receptor-associated protein (RAP). Binds dimers of beta 2-glycoprotein I and may be involved in the suppression of platelet aggregation in the vasculature. Highly expressed in the initial segment of the epididymis, where it affects the functional expression of clusterin and phospholipid hydroperoxide glutathione peroxidase (PHGPx), two proteins required for sperm maturation. May also function as an endocytic receptor. Homo sapiens (taxid: 9606) |
| >sp|P98156|VLDLR_MOUSE Very low-density lipoprotein receptor OS=Mus musculus GN=Vldlr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 136/242 (56%), Gaps = 12/242 (4%)
Query: 21 VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80
++ N+++P +AVDWV K +YWTDA +S I V+TL+G K++ L N+ L EP IA++
Sbjct: 508 MIDNVYNPAAIAVDWVYKTIYWTDA---ASKTISVATLDGAKRKFLFNSDLREPASIAVD 564
Query: 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTI 140
PLSG ++W++ G +I A ++G ++ LV +IQWP GIT+D RLYW D K +
Sbjct: 565 PLSGFVYWSDWGEPAKIEKAGMNGFDRRPLVTEDIQWPNGITLDLVKSRLYWLDSKLHML 624
Query: 141 ESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANN 200
S++LNG+DR +V + + P L +FED +Y+ + NKF S+ L NN
Sbjct: 625 SSVDLNGQDRRIVLKSLEFLAHPLALTIFEDRVYWIDGENEAVYGANKFTGSELATLVNN 684
Query: 201 LNRASDVLILQENKQAHNVTNHCDDKPCHQ--SALCINLPS------SHTCLCPDHLTEE 252
LN A D+++ E Q N C+D + LC+ P +TC CP+ E
Sbjct: 685 LNDAQDIIVYHELVQPSG-KNWCEDDMENGGCEYLCLPAPQINDHSPKYTCSCPNGYNLE 743
Query: 253 LN 254
N
Sbjct: 744 EN 745
|
Binds VLDL and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits. Binding to Reelin induces tyrosine phosphorylation of Dab1 and modulation of Tau phosphorylation. Mus musculus (taxid: 10090) |
| >sp|P35953|VLDLR_RABIT Very low-density lipoprotein receptor OS=Oryctolagus cuniculus GN=VLDLR PE=2 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 144/260 (55%), Gaps = 17/260 (6%)
Query: 2 ASISSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR 61
A S+ +V R + + + N+++P +AVDWV K +YWTDA R+ I V+TL+G
Sbjct: 492 AIFSASIDDKVGRHVKM---IDNVYNPAAIAVDWVYKTIYWTDAASRT---ISVATLDGA 545
Query: 62 KKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGI 121
K++ L N+ L EP IA++PLSG ++W++ G +I A ++G ++ LV +IQWP GI
Sbjct: 546 KRKFLFNSDLREPASIAVDPLSGFVYWSDWGEPAKIEKAGMNGFDRRPLVTVDIQWPNGI 605
Query: 122 TIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTN 181
T+D RLYW D K + S++LNG+DR +V + + P L +FED +Y+
Sbjct: 606 TLDLIKSRLYWLDSKLHMLSSVDLNGQDRRIVLKSLEFLAHPLALTIFEDRVYWIDGENE 665
Query: 182 NILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQ--SALCINLPS 239
+ NKF S+ L NNLN A D+++ E Q N C++ + LC+ P
Sbjct: 666 AVYGANKFTGSELATLVNNLNDAQDIIVYHELVQPSG-KNWCEEDMENGGCEYLCLPAPQ 724
Query: 240 ------SHTCLCPD--HLTE 251
+TC CP+ HL E
Sbjct: 725 INEHSPKYTCSCPNGYHLEE 744
|
Binds VLDL and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits. Binding to Reelin induces tyrosine phosphorylation of Dab1 and modulation of Tau phosphorylation. Oryctolagus cuniculus (taxid: 9986) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 713 | ||||||
| 270010181 | 4576 | hypothetical protein TcasGA2_TC009548 [T | 0.802 | 0.125 | 0.367 | 1e-111 | |
| 321462894 | 4592 | hypothetical protein DAPPUDRAFT_307561 [ | 0.792 | 0.123 | 0.348 | 1e-104 | |
| 242018517 | 4603 | low-density lipoprotein receptor, putati | 0.771 | 0.119 | 0.372 | 1e-102 | |
| 195381779 | 4618 | GJ21697 [Drosophila virilis] gi|19414441 | 0.863 | 0.133 | 0.337 | 6e-91 | |
| 195431345 | 4637 | GK15819 [Drosophila willistoni] gi|19415 | 0.782 | 0.120 | 0.358 | 3e-90 | |
| 427796811 | 4696 | Putative prolow-density lipoprotein rece | 0.814 | 0.123 | 0.331 | 6e-90 | |
| 427795113 | 3609 | Putative prolow-density lipoprotein rece | 0.814 | 0.160 | 0.331 | 7e-90 | |
| 195024691 | 4620 | GH21081 [Drosophila grimshawi] gi|193901 | 0.868 | 0.133 | 0.338 | 2e-89 | |
| 195123466 | 4639 | GI18681 [Drosophila mojavensis] gi|19391 | 0.774 | 0.118 | 0.357 | 3e-89 | |
| 198456290 | 4552 | GA24641 [Drosophila pseudoobscura pseudo | 0.757 | 0.118 | 0.360 | 1e-86 |
| >gi|270010181|gb|EFA06629.1| hypothetical protein TcasGA2_TC009548 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 250/681 (36%), Positives = 353/681 (51%), Gaps = 109/681 (16%)
Query: 8 NVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLL 67
N +R +R+ +++TV S LHDPRG++VDWV + LY TD G R I+ ST++G T+L
Sbjct: 3871 NESRARRDSDVRTVTSGLHDPRGISVDWVARRLYVTD-GVR----ILASTIDGLYVYTVL 3925
Query: 68 NTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPS 127
+ +P DI + P G +FW++ G RI A +DG + LV++ I +PTG+ +DY +
Sbjct: 3926 RGEMKQPRDIVVVPQDGVLFWSDWGPPARIETAHMDGNKRRVLVNSAILYPTGLAVDYTT 3985
Query: 128 QRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKIN 187
+RLYWADPK T+E++ +G DR VV H KPYK+EVFE+ L+ +TY+ +++L++N
Sbjct: 3986 RRLYWADPKTMTVETVKFDGSDRHVVRHFGKE-MKPYKIEVFENYLFVTTYQKHDVLRLN 4044
Query: 188 KFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHTCLCPD 247
KFGN + L+ L R +D+LIL E KQ +V N C D CH + C+ P++ TC C D
Sbjct: 4045 KFGNGNVTHLSQGLTRIADILILHEQKQDQSVNNTCVDF-CHHTEFCLLSPNTATCTCAD 4103
Query: 248 HLTEELNVTSGKMSCKVAPART--CYLDCNHGNLPSSHTCLCPDHLTEELNVTSGKMSCK 305
++ ++CK +RT C L+CN G +CK
Sbjct: 4104 GYVKD------NLTCKAVASRTPNCPLNCNSG-------------------------TCK 4132
Query: 306 VAPARTCYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHP 365
+ + +P C C + G CE S C N+GMCY DL P
Sbjct: 4133 IVQGQ-----------------NPKCFCPAQYTGPRCEHFRCSQ-YCKNKGMCYVDLAAP 4174
Query: 366 E-----PTYKCHCAPSYTGARCES--RICENKCHNGGTCIA---TTQTCVCPPGFTGDTC 415
+ P +C+CAP +TG RCE+ +C+ +C+NGGTC C CP GFTG C
Sbjct: 4175 QSPDSLPPLRCNCAPQWTGERCETPVNLCDGRCYNGGTCFTPKPEMPVCNCPSGFTGSRC 4234
Query: 416 QQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCS 475
Q C L CQNGGVCV T C CP Y G++C+ S C NG+ T SG KC C
Sbjct: 4235 QNCAQLVCQNGGVCVKDT----CKCPVGYSGRHCEISFCGK---NGKPITTSSGLKCSCL 4287
Query: 476 PGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYT 535
PG+ G+KC+ C C NGGTC +K C CP+ +
Sbjct: 4288 PGFGGEKCEQDRCYQ---------------------HCQNGGTCRMGTKQPECDCPAFFG 4326
Query: 536 GRRCECAV--GDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQC-TEREDS 592
GRRCE + G A +C C N G+CV++ G+P CKC P+ G +C ++
Sbjct: 4327 GRRCEIDLCTGGEPPKGCAKRCV---CGNGGSCVIMNGRPVCKCQRPWGGLKCEIYVGNA 4383
Query: 593 PSCHNYCDNAGLCS-YSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDP 651
+C C N G+C S P+C C W+G C++ CA++C NGGTC
Sbjct: 4384 DTCAGLCQNGGVCQILSPHVDPICQCPQSWTGPRCTQLAVCANYCQNGGTCDVS------ 4437
Query: 652 DLKPICICPRGYAGVRCQTLV 672
D P C CP + GV+C+ L
Sbjct: 4438 DGLPYCRCPADFDGVKCELLA 4458
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321462894|gb|EFX73914.1| hypothetical protein DAPPUDRAFT_307561 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 248/711 (34%), Positives = 359/711 (50%), Gaps = 146/711 (20%)
Query: 14 REMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNE 73
R +T+L+ L DPRG+AVDW G NLYW D + + V + +G +R L+++ L++
Sbjct: 3815 RRGKTETLLTGLEDPRGLAVDWFGFNLYWVDG---THKLVGVISFDGLLRRHLISSDLDQ 3871
Query: 74 PYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWA 133
P+DI ++PLSG MFW++LG+ RI A +DG + LVD++I +PTG+ IDYP++RLYWA
Sbjct: 3872 PHDIVVDPLSGSMFWSDLGLNARIETARMDGSLRRLLVDSDILYPTGLAIDYPARRLYWA 3931
Query: 134 DPKARTIESINLNGKDRFVVYH----TEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKF 189
DPK T+ES+NL GKDR VV ED KP+K+++FED+++ ++T+ I ++NKF
Sbjct: 3932 DPKTGTLESVNLEGKDRVVVRRFRLSIED---KPFKVDIFEDSMFLVMHQTHGIARLNKF 3988
Query: 190 GN------------------SDFNV------LANNLNRASDVLILQENKQAHNVTNHCDD 225
G ++NV L + LNRASD++++QENKQ +N C
Sbjct: 3989 GQGIDSIYSFLFIQWTSQLFENYNVAGNLTTLVSGLNRASDIIVVQENKQTRQSSNPCST 4048
Query: 226 KPCHQSALCINLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTC 285
K C+ ALC+ L SS + C ++ + ++C+ C LDCN G
Sbjct: 4049 K-CNPGALCL-LSSSTSRTCSCTMSMTTTMVGTDVTCQPP---VCGLDCNSGK------- 4096
Query: 286 LCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKV 345
C DD C C + G CE+
Sbjct: 4097 -----------------------------------CVVDDRGMASCKCPSLYEGDRCERY 4121
Query: 346 NNSMCPCLNQGMCYPDLTHPE-PTYKCHCAPSYTGARCESR--ICENKCHNGGTCIATTQ 402
S C N+G+CYPDL + P KC C P +TG RCE+R CE++C NGG+CI T
Sbjct: 4122 RCSGY-CRNKGVCYPDLLVSDPPPLKCSCTPDWTGERCETRATACEDRCQNGGSCIQTAS 4180
Query: 403 --TCVCPPGFTGDTCQQCLNLKCQNGGVCV--------------------NKTTGLECDC 440
+C CP GF+G+ C+ C +L C +G C +K C C
Sbjct: 4181 GTSCSCPSGFSGEFCENCPSLNCLHGAFCRAIEKETKNKEKENRDKNSENDKERKFVCSC 4240
Query: 441 PKFYYGKNCQYSQCKNYCVNGECSITDSG-PKCMCSPGYSGKKCDTCTCLNGDSGPKCMC 499
P + G C+ S+C +YC EC++ + G P+C+C+PG++GKKCD C
Sbjct: 4241 PPGFSGDRCERSECDDYCPQSECTMNELGVPQCLCAPGFTGKKCDNDVCAE--------- 4291
Query: 500 SPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE----------CAVGDTSCA 549
CLN G C+ ++K C C YTGRRCE C G ++
Sbjct: 4292 ------------FCLNNGECLRSAKKITCNCKPGYTGRRCETRSECTDPSQCPAGTSN-- 4337
Query: 550 SLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTE-REDSPSCHNYCDNAGLCSYS 608
+++ C C N G CV I G+ C+C ++G C + R D +C C N G+C +
Sbjct: 4338 AISTVCNGFDCLNGGLCVAIRGQAFCRCSDDWAGLHCEDYRGDYNACKAMCINGGVCVST 4397
Query: 609 KQ-GKPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICI 658
K P C C+ W+G C R SC ++CFNGGTC + + D DLKP C+
Sbjct: 4398 KALSVPRCECLADWTGPRCQYRKSCLNYCFNGGTC---SLNPDEDLKPTCL 4445
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242018517|ref|XP_002429721.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis] gi|212514727|gb|EEB16983.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 242/649 (37%), Positives = 336/649 (51%), Gaps = 99/649 (15%)
Query: 11 RVKREMN-LKTVLSNLHDPRGVAVDWVGKNLYWTDA-GGRSSNNIMVSTLEGRKKRTLLN 68
R KR+ + LK V+ LHDP+G+A+DWV LY+ D S +M STL GRKK T++
Sbjct: 3914 RFKRDSDTLKLVVGELHDPKGLAIDWVVGRLYYIDKIPNEKSAFLMASTLNGRKKTTIIK 3973
Query: 69 TGLNEPYDIALEPLSGRMFWTELGIK-PRISGASIDGKNKFNLVDNNIQWPTGITIDYPS 127
T L EP D+ALEP +F+T+ +K P+I + +DG ++ +V ++ P+GI+IDYPS
Sbjct: 3974 TNLIEPMDLALEPKMALLFFTDCNLKFPKIERSFMDGSHRKLVVSKDVVCPSGISIDYPS 4033
Query: 128 QRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKIN 187
LY+ D K T+ES++ NG +R VV + ++PYKLE+FED Y S+Y+ N+L++N
Sbjct: 4034 SVLYFVDTKLNTLESVDFNGDNRMVVKAFNKDSFRPYKLEIFEDFAYISSYQNENVLRMN 4093
Query: 188 KFGNSDF-NVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHT---- 242
KFG + NV+ NR SD++I QENKQ + N C CH+S+LC+ + SS+T
Sbjct: 4094 KFGRGETKNVIQGVRNRMSDIVIFQENKQEKGLLNPCPMGSCHESSLCV-IGSSNTKTNI 4152
Query: 243 ----CLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNVT 298
CLCPD L + + + + + CK+ + PD
Sbjct: 4153 VKKSCLCPDGLQKTV-LANSTVICKI---------------------MVPD--------- 4181
Query: 299 SGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMC 358
+ C L C+ G CE P C C N+ GT+C+K S C N G+C
Sbjct: 4182 -----------KKCDLFCHEGKCEM-TSAGPRCKCNPNYEGTFCQKFKCSQY-CKNGGIC 4228
Query: 359 YPDLTHPEPTYK--CHCAPSYTGARCESRI--CENKCHNGGTCI---ATTQTCVCPPGFT 411
++ P + CHC P +TG RCE+RI C+++C NGG C+ + C CPPGF
Sbjct: 4229 VEVNSNNRPNKELICHCGPEFTGERCETRIEFCKDRCLNGGHCVKFPSGIPHCECPPGFI 4288
Query: 412 GDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPK 471
G C+ C+NL+C+N G+CV EC CP+ + G C S C+N+C G C+I P
Sbjct: 4289 GTRCENCINLRCENNGICVKTNGVEECSCPREFVGPTCSRSVCENFCARGNCTIISGEPV 4348
Query: 472 CMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCP 531
C C PGYSGKKCD C GY CLN G C N +N C+CP
Sbjct: 4349 CSCPPGYSGKKCDRDAC------------QGY---------CLNNGVCRLNGRNVYCECP 4387
Query: 532 SQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTERED 591
TG +CE V +KCT YC N GTC EGK C+C + G C E
Sbjct: 4388 PDRTGPKCETYV---------SKCTDAYCRNGGTCYSNEGKKFCRCPVGWGGATCQEW-- 4436
Query: 592 SPSCHNYCDNAGLCSYSKQG--KPVCTCVNGWSGITCSERVSCAHFCFN 638
SC ++C N G C +S VC C ++G+ C V A N
Sbjct: 4437 -LSCDHFCFNGGTCEHSDNPSISRVCACGPDFTGVRCETPVRGARNLVN 4484
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195381779|ref|XP_002049622.1| GJ21697 [Drosophila virilis] gi|194144419|gb|EDW60815.1| GJ21697 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 252/746 (33%), Positives = 365/746 (48%), Gaps = 130/746 (17%)
Query: 6 SGNVTRVKREMNLKTVLS--NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKK 63
G RV+R++ T + +L DP+ +AVDW+ + +Y D+ N I+ + +EG+K
Sbjct: 3877 EGTGVRVRRDLKELTAFNIPDLDDPKSLAVDWITQMVYIVDS---RHNQIIATDIEGKKY 3933
Query: 64 RTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITI 123
+L++TG+N P DI LEP S M W+ L + I AS+DG NK +LV+ ++ WP ++I
Sbjct: 3934 ISLVSTGMN-PTDIVLEPESRVMIWSTL--ENGILVASLDGNNKKSLVERDVGWPISLSI 3990
Query: 124 DYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNI 183
DYP+ RLYWAD + TIE+ LNGKDR VV N KP K++VFED LY Y +I
Sbjct: 3991 DYPTGRLYWADYRKGTIETCRLNGKDRNVVRRF-GNREKPQKIDVFEDYLYIKLY-DQSI 4048
Query: 184 LKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQ-SALCINLPSS-- 240
+K+NKFGN + L R+SD+ IL KQ N++N C +PC ALCI S
Sbjct: 4049 IKMNKFGNDNGTYLLKGY-RSSDIGILHPMKQNRNISNPCAKEPCKALRALCILSTESAN 4107
Query: 241 -HTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNVTS 299
++C CP+ V + + CK H ++P+
Sbjct: 4108 GYSCKCPNEY-----VMTEEGICKA-----------HTDIPN------------------ 4133
Query: 300 GKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMC- 358
C L CN GTC+ + P CICQ F G CE S C N G+C
Sbjct: 4134 -----------YCPLLCNLGTCQVVNHV-PKCICQPQFEGELCEHYRCSGY-CQNYGLCT 4180
Query: 359 ----YPDLTHPEPTYKCHCAPSYTGARCESRI--CENKCHNGGTCIATT---QTCVCPPG 409
P L P P KC C P+++GARCE + C+++CHNGG+C+ + C CP
Sbjct: 4181 VAPQLPGLQEP-PPLKCTCPPNWSGARCEVSVSDCQSRCHNGGSCLVSETEGMKCSCPDM 4239
Query: 410 FTGDTCQQCLNLKCQNGGVCVNKTTGL-ECDCPKFYYGKNCQYSQCKNYCVN-GECSITD 467
+ GD C+ CLNL C+NGG+C TG +C+CP Y GK C++++C ++C N G C I
Sbjct: 4240 YVGDQCEHCLNLTCENGGICRETLTGAPQCECPDGYTGKRCEFNECADFCKNGGTCRIGA 4299
Query: 468 SGPK-CMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNN 526
G + C C GY G+ C+ +C + C NGGTC
Sbjct: 4300 KGQRQCKCPRGYYGEHCEANSCRD---------------------FCQNGGTCTDRGHKL 4338
Query: 527 VCKCPSQYTGRRCECAV---------GDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKC 577
C CP++Y G RCE + D S N CT C N+GTC +I+G C C
Sbjct: 4339 TCTCPTRYIGDRCESDLCKTSIPPRFCDVSLLPSRNPCTGIICENSGTCHVIKGVAMCNC 4398
Query: 578 LPPYSGKQCTE--REDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCA-- 633
++G+ CT ED+P C YC N G+C ++ P CTCV W G C C
Sbjct: 4399 TDQWNGEFCTMPVGEDNP-CVRYCANGGVCHLNEYTLPHCTCVGEWQGDFCELPPHCVGE 4457
Query: 634 -HFCFNGGTCREQNYSLDPDLKPICICP-RGYAGVRCQTLVHYISKKQSYVNSHISSILI 691
C G + E C+C + ++ V +++ ++ S+L
Sbjct: 4458 CSVCRTGSSINE------------CLCDNKRVVPCLAESAVALSGEQERKESASWVSVLA 4505
Query: 692 LIL-----LLITVGGIGYYIFRIKMS 712
+IL LL+ GG+ Y++ + +++
Sbjct: 4506 VILAVTTSLLVLFGGVVYFLKKHRIA 4531
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195431345|ref|XP_002063703.1| GK15819 [Drosophila willistoni] gi|194159788|gb|EDW74689.1| GK15819 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 339 bits (870), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 239/667 (35%), Positives = 333/667 (49%), Gaps = 109/667 (16%)
Query: 6 SGNVTRVKREM-NLKTV-LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKK 63
G RV+R++ LK + L DP+ +AVDW+ + +Y D+ N I+ + +EG+K
Sbjct: 3892 EGQGVRVRRDLKELKAFDIPELDDPKSLAVDWITQRVYIIDS---RHNQILATDIEGKKY 3948
Query: 64 RTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITI 123
+L++TG+N P DI LEP S M W+ L + I AS+DG NK +LV+ ++ WP ++I
Sbjct: 3949 ISLVSTGMN-PTDIVLEPESRIMIWSTL--ENGILVASLDGSNKKSLVERDVGWPLSLSI 4005
Query: 124 DYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNI 183
DYP+ RLYWAD + TIE+ LNGKDR VV N KP K++VFED LY Y +I
Sbjct: 4006 DYPTGRLYWADYRKGTIETCRLNGKDRNVVRRF-GNRDKPQKIDVFEDYLYIKLY-DQSI 4063
Query: 184 LKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQS-ALCI---NLPS 239
+K+NKFG+ + L R+SD+ IL KQ N++N C PC S A+CI S
Sbjct: 4064 IKMNKFGHGNGTYLLKGY-RSSDIGILHPMKQNRNISNPCAKDPCKASRAMCILSAESDS 4122
Query: 240 SHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNVTS 299
++C C D + + CK H +P CP
Sbjct: 4123 GYSCKCADGYV----MAEDEGICKA-----------HAEIPD----YCP----------- 4152
Query: 300 GKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMC- 358
L CN G C+ +D P CICQ F G +CE S CLN G+C
Sbjct: 4153 --------------LQCNIGVCQIVNDV-PKCICQAQFEGEFCEHYRCSG-HCLNYGLCT 4196
Query: 359 -YPDL--THPEPTYKCHCAPSYTGARCESR--ICENKCHNGGTCIATT---QTCVCPPGF 410
P L + P KC C P ++GARCE+ +C+++CHNGG+C+ + C CP F
Sbjct: 4197 VAPQLPGSQDPPPLKCTCTPGWSGARCETSMPVCQSRCHNGGSCLISETEGMKCSCPEMF 4256
Query: 411 TGDTCQQCLNLKCQNGGVCVNKTTGL-ECDCPKFYYGKNCQYSQCKNYCVN-GECSITDS 468
G+ C+ CLNL C+NGG+C G+ +C+CP Y GK C++++C ++C N G CSI +
Sbjct: 4257 LGEQCEHCLNLSCENGGICRETLRGMPQCECPDGYTGKRCEFNECTDFCKNGGTCSIGNK 4316
Query: 469 GPK-CMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNV 527
G + C C GY G+ C+ +C + C NGGTC
Sbjct: 4317 GQRQCRCPSGYYGEHCEANSCRD---------------------FCQNGGTCADRGHRLS 4355
Query: 528 CKCPSQYTGRRCECAV---------GDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCL 578
C CPS+Y G RCE + D S N CT C N+GTC +I+G C C
Sbjct: 4356 CTCPSRYIGERCESDLCKTSNPPRFCDASEVPSRNPCTGIICQNSGTCHVIKGVAMCNCT 4415
Query: 579 PPYSGKQCTE--REDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFC 636
++G CT +D+P C YC N G+C + P C+C+ W G C C C
Sbjct: 4416 DQWNGDFCTMPVGDDNP-CVRYCANGGVCHLDEYSLPHCSCIGEWQGNACELPPHCVSEC 4474
Query: 637 FNGGTCR 643
G CR
Sbjct: 4475 ---GVCR 4478
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|427796811|gb|JAA63857.1| Putative prolow-density lipoprotein receptor-related protein 1, partial [Rhipicephalus pulchellus] | Back alignment and taxonomy information |
|---|
Score = 338 bits (867), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 238/717 (33%), Positives = 343/717 (47%), Gaps = 136/717 (18%)
Query: 1 MASISSGNVTRVKREM--NLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTL 58
+ S+ R KR+ + +L NL +PRG+AVDWVG+ LYW DAG S I V++L
Sbjct: 3969 LPSLPQTENGRRKRQAASDAAVLLGNLTEPRGLAVDWVGQMLYWVDAGEHS---ISVASL 4025
Query: 59 EGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWP 118
+GR +RTL++ L++P DIA++P SG +FWTE G KPRI A++DG N LVD + WP
Sbjct: 4026 DGRLRRTLISENLDQPSDIAVDPHSGYLFWTETGSKPRIGRANLDGSNPRTLVDARVIWP 4085
Query: 119 TGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYH--TEDNGY----KPYKLEVFEDN 172
TGI +D+ + R+YWAD KA +E+ N++GK R +VY+ + D + PY+++VFEDN
Sbjct: 4086 TGIAVDHAAGRIYWADRKASLVETANIDGKLRHIVYNRTSHDTAHAHEESPYRVDVFEDN 4145
Query: 173 LYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQSA 232
LY ST+ +N IL+++KFG L L+RA+DV+I+QE+KQ+ + N C PC A
Sbjct: 4146 LYISTFPSNAILRVSKFGGGKVTYLIRGLHRATDVVIVQEHKQSAPMNNPCSKNPCGSGA 4205
Query: 233 LCINLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLCPDHLT 292
LC+ S +CLCPD +
Sbjct: 4206 LCVLRNSKE-----------------------------------------FSCLCPDGMV 4224
Query: 293 EELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPC 352
E V VAP P C+ N C
Sbjct: 4225 ETRTVDRTTACTIVAPTPP----------------SPDAKCELN---------------C 4253
Query: 353 LNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGTC-IATTQT--CVCPPG 409
L+ G C H +P C C YTG RCE +C C N G C + T+Q C+CPP
Sbjct: 4254 LSGGTCVLGNNH-QPF--CRCPVGYTGKRCERYVCSQYCKNKGLCNVITSQEMYCICPPQ 4310
Query: 410 FTGDTCQQCLNL--KCQNGGVCVNKTTGLECD--CPKFYYGKNCQYSQCKNYCVNGECSI 465
+TG C+ LN+ C G C N + C + C+ +++CV+G C +
Sbjct: 4311 WTGKRCETPLNICELCMRDGSCTNGFADVRCKHCILRCTQEDPCRSQGEEDHCVHGVCRV 4370
Query: 466 TDSGPK-CMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSK 524
++G + C+C Y+G++CD T L CD+ C NGGTC+ K
Sbjct: 4371 NETGVRQCICDSSYTGERCDRLTPL------------------CDS-YCRNGGTCL-GRK 4410
Query: 525 NNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPS----CKCLPP 580
C CP G +C+ G +SC C + TC+ + + C C
Sbjct: 4411 KLPCTCPPGLLGS--DCSPGGSSCG----------CLHGATCITTKHEEGLTQRCVCPAG 4458
Query: 581 YSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGG 640
++G++C R C + G+C Y+ G+P+C C GW G+ C + SC FCFN G
Sbjct: 4459 FTGERCESRLADICLDFPCLHGGIC-YTSAGQPICKCPLGWGGLHCDQSSSCRGFCFNHG 4517
Query: 641 TCREQNYSLDPDLKPICICPRGYAGVRCQTLVHYI--SKKQSYVNSHISSILILILL 695
TC S D P C+C RG+ G RCQ V I S + + ++ +IL IL+
Sbjct: 4518 TCL---LSSQNDAMPSCLCARGFTGPRCQDRVDQIGYSDHSTSSSDNLPNILGAILI 4571
|
Source: Rhipicephalus pulchellus Species: Rhipicephalus pulchellus Genus: Rhipicephalus Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|427795113|gb|JAA63008.1| Putative prolow-density lipoprotein receptor-related protein 1, partial [Rhipicephalus pulchellus] | Back alignment and taxonomy information |
|---|
Score = 338 bits (867), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 238/717 (33%), Positives = 343/717 (47%), Gaps = 136/717 (18%)
Query: 1 MASISSGNVTRVKREM--NLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTL 58
+ S+ R KR+ + +L NL +PRG+AVDWVG+ LYW DAG S I V++L
Sbjct: 2882 LPSLPQTENGRRKRQAASDAAVLLGNLTEPRGLAVDWVGQMLYWVDAGEHS---ISVASL 2938
Query: 59 EGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWP 118
+GR +RTL++ L++P DIA++P SG +FWTE G KPRI A++DG N LVD + WP
Sbjct: 2939 DGRLRRTLISENLDQPSDIAVDPHSGYLFWTETGSKPRIGRANLDGSNPRTLVDARVIWP 2998
Query: 119 TGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYH--TEDNGY----KPYKLEVFEDN 172
TGI +D+ + R+YWAD KA +E+ N++GK R +VY+ + D + PY+++VFEDN
Sbjct: 2999 TGIAVDHAAGRIYWADRKASLVETANIDGKLRHIVYNRTSHDTAHAHEESPYRVDVFEDN 3058
Query: 173 LYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQSA 232
LY ST+ +N IL+++KFG L L+RA+DV+I+QE+KQ+ + N C PC A
Sbjct: 3059 LYISTFPSNAILRVSKFGGGKVTYLIRGLHRATDVVIVQEHKQSAPMNNPCSKNPCGSGA 3118
Query: 233 LCINLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLCPDHLT 292
LC+ S +CLCPD +
Sbjct: 3119 LCVLRNSKE-----------------------------------------FSCLCPDGMV 3137
Query: 293 EELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPC 352
E V VAP P C+ N C
Sbjct: 3138 ETRTVDRTTACTIVAPTPP----------------SPDAKCELN---------------C 3166
Query: 353 LNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGTC-IATTQT--CVCPPG 409
L+ G C H +P C C YTG RCE +C C N G C + T+Q C+CPP
Sbjct: 3167 LSGGTCVLGNNH-QPF--CRCPVGYTGKRCERYVCSQYCKNKGLCNVITSQEMYCICPPQ 3223
Query: 410 FTGDTCQQCLNL--KCQNGGVCVNKTTGLECD--CPKFYYGKNCQYSQCKNYCVNGECSI 465
+TG C+ LN+ C G C N + C + C+ +++CV+G C +
Sbjct: 3224 WTGKRCETPLNICELCMRDGSCTNGFADVRCKHCILRCTQEDPCRSQGEEDHCVHGVCRV 3283
Query: 466 TDSGPK-CMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSK 524
++G + C+C Y+G++CD T L CD+ C NGGTC+ K
Sbjct: 3284 NETGVRQCICDSSYTGERCDRLTPL------------------CDS-YCRNGGTCL-GRK 3323
Query: 525 NNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPS----CKCLPP 580
C CP G +C+ G +SC C + TC+ + + C C
Sbjct: 3324 KLPCTCPPGLLGS--DCSPGGSSCG----------CLHGATCITTKHEEGLTQRCVCPAG 3371
Query: 581 YSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGG 640
++G++C R C + G+C Y+ G+P+C C GW G+ C + SC FCFN G
Sbjct: 3372 FTGERCESRLADICLDFPCLHGGIC-YTSAGQPICKCPLGWGGLHCDQSSSCRGFCFNHG 3430
Query: 641 TCREQNYSLDPDLKPICICPRGYAGVRCQTLVHYI--SKKQSYVNSHISSILILILL 695
TC S D P C+C RG+ G RCQ V I S + + ++ +IL IL+
Sbjct: 3431 TCL---LSSQNDAMPSCLCARGFTGPRCQDRVDQIGYSDHSTSSSDNLPNILGAILI 3484
|
Source: Rhipicephalus pulchellus Species: Rhipicephalus pulchellus Genus: Rhipicephalus Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195024691|ref|XP_001985922.1| GH21081 [Drosophila grimshawi] gi|193901922|gb|EDW00789.1| GH21081 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 251/742 (33%), Positives = 354/742 (47%), Gaps = 123/742 (16%)
Query: 6 SGNVTRVKREMNLKTVLS--NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKK 63
G+ RV+R++ T + +L DP+ +AVDW+ + +Y D+ N I+ + +EG+K
Sbjct: 3880 EGSGVRVRRDLKELTAFNIPDLDDPKSLAVDWITQMVYIIDS---RHNQIIATDIEGKKY 3936
Query: 64 RTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITI 123
+L++TG+N P DI LEP S M W+ L + I AS+DG NK +LV+ ++ WP ++I
Sbjct: 3937 ISLVSTGMN-PTDIVLEPESRVMIWSTL--ENGILVASLDGSNKKSLVERDVGWPISLSI 3993
Query: 124 DYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNI 183
DYP+ RLYWAD + TIE+ LNGKDR VV N KP K++VFED LY Y +I
Sbjct: 3994 DYPTGRLYWADYRKGTIETCRLNGKDRNVVRRF-GNREKPQKIDVFEDYLYIKLY-DQSI 4051
Query: 184 LKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQS-ALCINLPSS-- 240
+K+NKFGN + L R+SD+ IL KQ N++N C PC S ALCI S
Sbjct: 4052 IKMNKFGNDNGTYLLKGY-RSSDIGILHPMKQNRNISNPCGKDPCKASRALCILSTESAN 4110
Query: 241 -HTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNVTS 299
++C CP+ + CK H ++P+
Sbjct: 4111 GYSCKCPNDYVMSEGI------CKA-----------HSDIPN------------------ 4135
Query: 300 GKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMC- 358
C L CN GTC+ + P CICQ F G CE S CLN G+C
Sbjct: 4136 -----------YCPLLCNLGTCQLVNHV-PKCICQPQFEGELCEHYRCSGY-CLNYGLCT 4182
Query: 359 ----YPDLTHPEPTYKCHCAPSYTGARCESRI--CENKCHNGGTCIATT---QTCVCPPG 409
P L P P KC C P+++GARCE+ + C+++CHNGG C+ + C CP
Sbjct: 4183 VAPQLPGLQDP-PPLKCTCPPNWSGARCETSVSDCQSRCHNGGACLVSDTEGMKCSCPDM 4241
Query: 410 FTGDTCQQCLNLKCQNGGVCVNKTTGL-ECDCPKFYYGKNCQYSQCKNYCVN-GECSITD 467
+ GD C+ CLNL C+NGG+C TG +C+CP Y GK C+ ++C ++C N G CSI
Sbjct: 4242 YVGDQCEHCLNLTCENGGICRETITGAPQCECPDGYTGKRCEINECADFCKNGGTCSIGA 4301
Query: 468 SGPK-CMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNN 526
G + C C GY G+ C+ +C + C NGGTC
Sbjct: 4302 KGQRQCKCPSGYYGEHCEANSCRD---------------------FCQNGGTCTDRGHRL 4340
Query: 527 VCKCPSQYTGRRCECAV---------GDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKC 577
C CP++Y G RCE + D S N CT C N+GTC +I+G C C
Sbjct: 4341 TCTCPTRYIGDRCESDLCKTSNPPRFCDVSQLPSRNPCTGIICQNSGTCHVIKGVAMCNC 4400
Query: 578 LPPYSGKQCT-EREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCA--- 633
++G+ CT D+ C YC N G+C + P CTC+ W G C C
Sbjct: 4401 TDQWNGEFCTLPVGDNNPCVRYCANGGVCHLNVYSLPHCTCIGEWQGDYCELPPHCVGEC 4460
Query: 634 HFCFNGGTCRE---QNYSLDPDLKPICICPRGYAGVRCQTLVHYISKKQSYVNSHISSIL 690
C G + E N + P L + G S+V+ +
Sbjct: 4461 SVCRTGSSINECLCDNKRVVPCLAESAVALNGEQDQM---------DSASWVSVLAVVLA 4511
Query: 691 ILILLLITVGGIGYYIFRIKMS 712
I LL+ GG Y + + +++
Sbjct: 4512 IATLLVALFGGAVYLLKKHRIA 4533
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195123466|ref|XP_002006227.1| GI18681 [Drosophila mojavensis] gi|193911295|gb|EDW10162.1| GI18681 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 336 bits (861), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 236/661 (35%), Positives = 333/661 (50%), Gaps = 109/661 (16%)
Query: 6 SGNVTRVKREMNLKTVLS--NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKK 63
G RV+R++ T + +L DP+ +AVDW+ + +Y D+ N I+ + +EG+K
Sbjct: 3899 EGTGVRVRRDLKELTAFNIPDLDDPKSLAVDWITQMVYIIDS---RHNQIIATDIEGKKY 3955
Query: 64 RTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITI 123
+L++TG+N P DI LEP S M W+ L + I AS+DG NK +LV+ ++ WP ++I
Sbjct: 3956 ISLVSTGMN-PTDIVLEPESRVMIWSTL--ENGILVASLDGTNKKSLVERDVGWPISLSI 4012
Query: 124 DYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNI 183
DYP+ RLYWAD + TIE+ LNGK+R VV N KP K++VFED LY Y +I
Sbjct: 4013 DYPTGRLYWADYRKGTIETCRLNGKERNVVRRF-GNREKPQKIDVFEDYLYIKLY-DQSI 4070
Query: 184 LKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQ-SALCI---NLPS 239
+K+NKFGN + L R+SD+ IL KQ N++N C PC ALCI +
Sbjct: 4071 IKMNKFGNDNGTYLLKGY-RSSDIGILHPMKQNRNISNPCAKDPCKALRALCILSTETAN 4129
Query: 240 SHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNVTS 299
++C CP+ V + + CK H ++P+ CP
Sbjct: 4130 GYSCKCPNEY-----VMTEEGVCKA-----------HADIPN----YCP----------- 4158
Query: 300 GKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMC- 358
L CN GTC+ + P C+CQ + G CE S CLN G+C
Sbjct: 4159 --------------LLCNLGTCQVINHV-PKCVCQPQYEGELCEHYRCSG-YCLNFGLCT 4202
Query: 359 ----YPDLTHPEPTYKCHCAPSYTGARCESRI--CENKCHNGGTCIATT---QTCVCPPG 409
P L P P KC C P+++GARCE + C+++CHNGG+C+ T C CP
Sbjct: 4203 VAPQLPGLQDP-PPLKCTCPPNWSGARCEVSVADCQSRCHNGGSCLVTEAEGMKCSCPDM 4261
Query: 410 FTGDTCQQCLNLKCQNGGVCVNKTTGL-ECDCPKFYYGKNCQYSQCKNYCVN-GECSITD 467
+ GD C+ CLNL C+NGG+C TG +C+CP + GK C++++C +YC N G C I
Sbjct: 4262 YVGDQCEHCLNLTCENGGICRETLTGAPQCECPDGFTGKRCEFNECADYCNNGGTCIIGA 4321
Query: 468 SGPK-CMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNN 526
G + C C GY G+ C+ +C + C NGGTC+
Sbjct: 4322 KGQRQCKCPSGYYGEHCEANSCRD---------------------FCQNGGTCMDRGHRL 4360
Query: 527 VCKCPSQYTGRRCECAV---------GDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKC 577
C CP++Y G RCE + D S N CT C N+GTC +I+G C C
Sbjct: 4361 SCTCPTRYIGERCESDLCKSSIPPHFCDASTQPSRNPCTGIICQNSGTCHVIKGVAMCNC 4420
Query: 578 LPPYSGKQCTER--EDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHF 635
++G+ CT +D+P C YC N GLC ++ P CTC+ W G C C
Sbjct: 4421 TDQWNGEFCTTNVADDNP-CVRYCANGGLCHLNQYRLPHCTCIGEWQGDFCELPPHCVGE 4479
Query: 636 C 636
C
Sbjct: 4480 C 4480
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|198456290|ref|XP_002138212.1| GA24641 [Drosophila pseudoobscura pseudoobscura] gi|198135560|gb|EDY68770.1| GA24641 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 327 bits (839), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 233/647 (36%), Positives = 323/647 (49%), Gaps = 107/647 (16%)
Query: 10 TRVKREMNLKTVLS--NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLL 67
RV+R++ T + L DP+ +AVDW+ + +Y D+ N I+ + +EG+K +L+
Sbjct: 3813 VRVRRDLKELTAFNIPELDDPKSLAVDWITQRVYIIDS---RHNKILATDIEGKKYISLV 3869
Query: 68 NTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPS 127
+TG N P DI LEP S M W+ L + I AS+DG NK +LV+ ++ WP +++DYP+
Sbjct: 3870 STGTN-PTDIVLEPESRIMIWSTL--ENGILVASLDGSNKKSLVERDVGWPISLSMDYPT 3926
Query: 128 QRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKIN 187
RLYWAD + TIE+ LNGKDR VV KP K++VFED LY Y +I+K+N
Sbjct: 3927 GRLYWADYRKGTIETCRLNGKDRNVVRRFGIR-EKPQKIDVFEDYLYIKLY-DQSIIKMN 3984
Query: 188 KFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQ-SALCINLPSS---HTC 243
KFGN + L R+SD+ IL KQ N++N C PC ALCI S ++C
Sbjct: 3985 KFGNDNGTYLLKGY-RSSDIGILHPMKQNRNISNPCLKDPCKAFKALCILSSESARGYSC 4043
Query: 244 LCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNVTSGKMS 303
C E V + + CK H ++P
Sbjct: 4044 KCA-----EGYVMTDEALCKA-----------HADVPD---------------------- 4065
Query: 304 CKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMC--YPD 361
C L CN G+C+ D P CICQ F G CE S CLN G+C P
Sbjct: 4066 -------YCPLQCNLGSCQIVDHV-PKCICQPQFEGELCEHYRCSG-HCLNYGLCTVAPQ 4116
Query: 362 L--THPEPTYKCHCAPSYTGARCESRI--CENKCHNGGTCIATT---QTCVCPPGFTGDT 414
L + P KC C P ++GARCE+ + C+++CHNGG+C+ + C CP F G+
Sbjct: 4117 LPGSLDAPPLKCTCTPGWSGARCETSLPACQSRCHNGGSCLISETEGMKCSCPDMFVGEQ 4176
Query: 415 CQQCLNLKCQNGGVCVNKTTGL-ECDCPKFYYGKNCQYSQCKNYCVN-GECSITDSGPK- 471
C+ CLNL C+NGGVC TG +C+CP Y GK C+ ++C ++C N G C I G +
Sbjct: 4177 CEHCLNLTCENGGVCRETLTGTPQCECPDGYTGKRCEINECADFCKNGGSCVIGSKGQRQ 4236
Query: 472 CMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCP 531
C C G+ G+ C++ +C + C NGGTC + C C
Sbjct: 4237 CKCPSGFYGEHCESSSCRD---------------------YCQNGGTCSERGRYLNCICL 4275
Query: 532 SQYTGRRCE---CAVGD------TSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYS 582
S+Y GRRCE C D S + N CT C N GTC +I+G C C ++
Sbjct: 4276 SRYYGRRCEMDLCLTSDPPQFCEASQVPVRNPCTGIICQNAGTCHVIKGVAMCNCTDQWN 4335
Query: 583 GKQCTE--REDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCS 627
G CT ED+P C YC N G+C + +P C+C+ W G C
Sbjct: 4336 GDFCTMPVLEDNP-CIRYCANGGVCHLDEYVRPHCSCIGEWQGNACE 4381
|
Source: Drosophila pseudoobscura pseudoobscura Species: Drosophila pseudoobscura Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 713 | ||||||
| FB|FBgn0053087 | 4699 | LRP1 "LDL receptor protein 1" | 0.796 | 0.120 | 0.348 | 3.8e-84 | |
| ZFIN|ZDB-GENE-030131-7126 | 4549 | lrp1b "low density lipoprotein | 0.625 | 0.098 | 0.352 | 4.9e-74 | |
| UNIPROTKB|P98157 | 4543 | LRP1 "Low-density lipoprotein | 0.612 | 0.096 | 0.358 | 3.3e-72 | |
| UNIPROTKB|K7GS03 | 1602 | LOC100514839 "Uncharacterized | 0.615 | 0.274 | 0.35 | 8.2e-69 | |
| UNIPROTKB|G3V928 | 4545 | Lrp1 "Protein Lrp1" [Rattus no | 0.615 | 0.096 | 0.354 | 1.7e-68 | |
| UNIPROTKB|Q07954 | 4544 | LRP1 "Prolow-density lipoprote | 0.612 | 0.096 | 0.344 | 3.6e-68 | |
| UNIPROTKB|E1BGJ0 | 4544 | LRP1 "Uncharacterized protein" | 0.612 | 0.096 | 0.344 | 3.6e-68 | |
| UNIPROTKB|F1SL63 | 1813 | F1SL63 "Uncharacterized protei | 0.615 | 0.242 | 0.35 | 3.7e-68 | |
| UNIPROTKB|E2R4Q1 | 4528 | LRP1 "Uncharacterized protein" | 0.612 | 0.096 | 0.346 | 4.6e-68 | |
| UNIPROTKB|J9P315 | 4544 | LRP1 "Uncharacterized protein" | 0.612 | 0.096 | 0.346 | 4.6e-68 |
| FB|FBgn0053087 LRP1 "LDL receptor protein 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 849 (303.9 bits), Expect = 3.8e-84, Sum P(2) = 3.8e-84
Identities = 224/643 (34%), Positives = 310/643 (48%)
Query: 7 GNVTRVKREMNLKTVLS--NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKR 64
G RV+R++ T + L DP+ +AVDW+ + +Y D+ N I+ + +EG+K
Sbjct: 3958 GTGVRVRRDLKELTAFNIPELDDPKSLAVDWISQRVYIIDS---RHNQILATDIEGKKYI 4014
Query: 65 TLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITID 124
+L++TG+N P DI LEP S M W+ L + I AS+DG NK +LV+ ++ WP +++D
Sbjct: 4015 SLVSTGMN-PTDIVLEPESRIMIWSTL--ENGILVASLDGSNKKSLVERDVGWPISLSMD 4071
Query: 125 YPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNIL 184
YP+ RLYWAD + TIE+ LNGKDR VV N KP K++VFED LY Y +I+
Sbjct: 4072 YPTGRLYWADYRKGTIETCRLNGKDRNVVRRF-GNREKPQKIDVFEDYLYIKLY-DQSII 4129
Query: 185 KINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQS-ALCI-NLPSS-- 240
K+NKFGN + L R+SD+ IL KQ N++N C PC S ALCI + SS
Sbjct: 4130 KMNKFGNDNGTYLLKGY-RSSDIGILHPMKQNRNISNPCAKDPCKSSRALCILSSESSVG 4188
Query: 241 HTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNVTSG 300
++C C + + G C L CN G TC DH+ + +
Sbjct: 4189 YSCKCAEGY---VMTDDGVCKAHADIPDYCPLQCNLG------TCKIVDHVPK--CICQP 4237
Query: 301 KMSCKVAPARTCYLDC-NHGTCE----FDDDFDP---HCICQENFYGTYCEKVNNSMCP- 351
+ ++ C C N+G C +P C C + G CE + C
Sbjct: 4238 QFEGELCEHYRCSGYCQNYGVCSVAPALPGSQEPPPLKCTCTAGWSGARCE-TSMPACQS 4296
Query: 352 -CLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICEN-KCHNGGTCIAT---TQTCVC 406
C N G C ++ E KC C +TG +CE C N C NGG C T T C C
Sbjct: 4297 RCHNGGSCL--ISETEGM-KCSCPKMFTGEQCEH--CRNLTCENGGICRETLTGTPQCEC 4351
Query: 407 PPGFTGDTCQ--QCLNLKCQNGGVCVNKTTGL-ECDCPKFYYGKNCQYSQCKNYCVNG-E 462
P GFTG C+ +C + C+NGG CV T G +C CP Y+G++C+ + C+++C NG
Sbjct: 4352 PDGFTGKRCEIDECADF-CKNGGSCVISTKGQRQCKCPSGYFGEHCESNSCRDFCRNGGT 4410
Query: 463 CSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCT---CLNGGTC 519
CS C C P Y G+ C++ C S P C + D CT C N GTC
Sbjct: 4411 CSERGGRLSCTCPPRYIGESCESDLCKT--SSPPHFCDNTKVPTR-DPCTLMICQNAGTC 4467
Query: 520 IPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGK-PSCKCL 578
+C C Q+ G C V D N C YC+N G C L E + P C C+
Sbjct: 4468 HIIKGVALCNCTDQWNGDLCTLPVTDD------NPCA-RYCANGGVCHLDEYRLPHCSCI 4520
Query: 579 PPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPV--CTCVN 619
+ G C E P C G C+ + G + C C N
Sbjct: 4521 GEWQGNAC---EMPPHCVG-----GECNVCRPGSSINECLCEN 4555
|
|
| ZFIN|ZDB-GENE-030131-7126 lrp1b "low density lipoprotein receptor-related protein 1b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 751 (269.4 bits), Expect = 4.9e-74, Sum P(2) = 4.9e-74
Identities = 173/491 (35%), Positives = 254/491 (51%)
Query: 22 LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEP 81
+ L PRG+AVDWV NLYWTD+G + I V+ + G+ ++TL++ ++EP+ I ++P
Sbjct: 3961 IPGLKMPRGIAVDWVAGNLYWTDSG---RDVIEVAQITGQHRKTLISGMIDEPHAIVVDP 4017
Query: 82 LSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIE 141
G M+WT+ G P+I A++DG + LV NIQWPTG+ +DY ++RLYWAD K I
Sbjct: 4018 QRGTMYWTDWGNHPKIETAAMDGTLRQTLVHENIQWPTGLAVDYFNERLYWADSKLSVIS 4077
Query: 142 SINLNGKDRFV-VYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANN 200
S+ L+G D V V + ++N +PY +++FED +Y T+ N + ++NKFG L
Sbjct: 4078 SVRLDGSDPVVAVSNLKNNLLRPYSIDIFEDYIYGVTHTNNIVFRVNKFGKGQAENLTTG 4137
Query: 201 LNRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHTCLCP-DHLTEELNVTSGK 259
+N A+D+++ KQ +TN CD K C LC+ PS C+CP DH+ + +
Sbjct: 4138 INHATDIVLYHRYKQPE-MTNPCDRKKCEW--LCLLSPSGPVCICPNDHVPDNGTCVKVQ 4194
Query: 260 MSCKVAPARTCYLDCNHG-----NLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYL 314
+ + TC L C +G N + C CP E C++ R Y
Sbjct: 4195 PPDQFPFSPTCDLQCQNGGSCYLNPLKNPKCRCPTSYRGE--------RCEINQCRD-YC 4245
Query: 315 DCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCP--CLNQGMCYPDLTHPEPTYKCH 372
N GTC P C CQ F G C N +C C N G C L + +PT C
Sbjct: 4246 Q-NRGTCSPSRTGAPTCRCQTGFTGPRC---NLYICENYCQNGGNCAVSLGN-QPT--CR 4298
Query: 373 CAPSYTGARCESRICENKCHNGGTCIAT---TQTCVCPPGFTGDTCQQCLNLKCQ--NGG 427
C P + G +C+ R CE+ C N G C+ T+ C C F G C+ L+ KC+ G
Sbjct: 4299 CPPGFLGDQCQYRQCEDFCKNDGQCLELNNGTKHCQCSDKFFGPQCE--LD-KCEYCGTG 4355
Query: 428 VCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSI-TDSG-PKCMCSPGYSGKKCD- 484
C TG+ C C C Y+ C ++C+ G+CS+ T + P+C C G+SG +C+
Sbjct: 4356 KCEKLQTGITCKCADNTKRPTC-YT-CDDFCIEGQCSVDTYTNLPQCRCHTGWSGFRCEL 4413
Query: 485 -TCTCLNGDSG 494
N DSG
Sbjct: 4414 NVAPVQNSDSG 4424
|
|
| UNIPROTKB|P98157 LRP1 "Low-density lipoprotein receptor-related protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 749 (268.7 bits), Expect = 3.3e-72, P = 3.3e-72
Identities = 173/483 (35%), Positives = 248/483 (51%)
Query: 22 LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEP 81
+S L PRG+AVDWV N+YWTD+G + I V+ ++G ++TL++ ++EP+ I ++P
Sbjct: 3953 ISGLKMPRGIAVDWVAGNIYWTDSG---RDVIEVAQMKGENRKTLISGMIDEPHAIVVDP 4009
Query: 82 LSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIE 141
L G M+W++ G P+I A++DG + LV +NIQWPTG+ +DY ++RLYWAD K I
Sbjct: 4010 LRGTMYWSDWGNHPKIETAAMDGTLRETLVQDNIQWPTGLAVDYHNERLYWADAKLSVIG 4069
Query: 142 SINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNL 201
SI LNG D V + P+ +++FED +Y TY N I KI+KFG+ L + L
Sbjct: 4070 SIRLNGTDPVVAIDNKKGLSHPFSIDIFEDYIYGVTYINNRIFKIHKFGHKSVTNLTSGL 4129
Query: 202 NRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHTCLCP-----DHLTEELNVT 256
N A+DV++ + KQ VTN CD K C LC+ PS C CP D+ T L +
Sbjct: 4130 NHATDVVLYHQYKQPE-VTNPCDRKKCEW--LCLLSPSGPVCTCPNGKRLDNGTCVL-IP 4185
Query: 257 SGKMSCKVAPARTCYLDCNHG-----NLPSSHTCLCPDHLTEELNVTSGKMSCKVAPART 311
S S V TC L C +G N C C E C++
Sbjct: 4186 SPTASAVVPTTDTCDLVCLNGGSCFLNARKQAKCRCQPRYNGE--------RCQI---NQ 4234
Query: 312 CYLDC-NHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCP--CLNQGMCYPDLTHPEPT 368
C C N G C P C C F G+ C++ +C C N G C + + +P
Sbjct: 4235 CSDYCQNGGLCTASPSGMPTCRCPTGFTGSRCDQ---QVCTNYCHNNGSCTVNQGN-QPN 4290
Query: 369 YKCHCAPSYTGARCESRICENKCHNGGTCIAT---TQTCVCPPGFTGDTCQQCLNLKCQN 425
C C P++ G RC+ + C N C N G C + + C CPP F G CQ +CQ
Sbjct: 4291 --CRCPPTFIGDRCQYQQCFNYCENNGVCQMSRDGVKQCRCPPQFEGAQCQDNKCSRCQE 4348
Query: 426 GGVCVNKTTG-LECDCPKFYYGKNCQYSQCKNYCVNG-ECSITDSG--PKCMCSPGYSGK 481
G +N+ +G + C CP +C C +YC+NG CSI+D P+C+C +G
Sbjct: 4349 GKCNINRQSGDVSCICPDGKIAPSCL--TCDSYCLNGGTCSISDKTQLPECLCPLEVTGM 4406
Query: 482 KCD 484
+C+
Sbjct: 4407 RCE 4409
|
|
| UNIPROTKB|K7GS03 LOC100514839 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 710 (255.0 bits), Expect = 8.2e-69, P = 8.2e-69
Identities = 168/480 (35%), Positives = 249/480 (51%)
Query: 22 LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEP 81
+S L PRG+A+DWV N+YWTD+G + I V+ ++G ++TL++ ++EP+ I ++P
Sbjct: 1012 ISGLKMPRGIAIDWVAGNVYWTDSG---RDVIEVAQMKGENRKTLISGMIDEPHAIVVDP 1068
Query: 82 LSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIE 141
L G M+W++ G P+I A++DG + LV +NIQWPTG+ +DY ++RLYWAD K I
Sbjct: 1069 LRGTMYWSDWGNHPKIETAAMDGTLRETLVQDNIQWPTGLAVDYHNERLYWADAKLSVIG 1128
Query: 142 SINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNL 201
SI LNG D V ++ P+ ++VFED +Y TY N + KI+KFG+S L L
Sbjct: 1129 SIRLNGTDPIVAADSKRGLSHPFSIDVFEDYIYGVTYINNRVFKIHKFGHSPLINLTGGL 1188
Query: 202 NRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGKMS 261
+ ASDV++ ++KQ VTN CD K C LC+ PS C CP+ + L+ +G +
Sbjct: 1189 SHASDVVLYHQHKQPE-VTNPCDRKKCEW--LCLLSPSGPVCTCPNG--KRLD--NG--T 1239
Query: 262 CKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNVTSGKMSCKVAPART---CYLD--- 315
C P+ T D P + C + + LN + C+ P T C LD
Sbjct: 1240 CVAVPSPTLPPDAPR---PGTCNLQCFNGGSCFLNARR-QPKCRCQPRYTGDKCELDQCW 1295
Query: 316 --C-NHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCP--CLNQGMCYPDLTHPEPTYK 370
C N GTC P C C F G C + +C C N C + + +P +
Sbjct: 1296 EYCRNGGTCAASPSGMPTCRCPTGFTGPKCTQ---QVCAGHCANNSTCTVNQGN-QP--Q 1349
Query: 371 CHCAPSYTGARCESRICENKCHNGGTC-IAT--TQTCVCPPGFTGDTCQQCLNLKCQNGG 427
C C P + G RC+ R C C N GTC +A ++ C C F G C+ +C +G
Sbjct: 1350 CRCLPGFLGDRCQYRQCSGYCENFGTCQMAADGSRQCRCTAYFEGARCEVNKCSRCLDGA 1409
Query: 428 VCVNKTTG-LECDCPKFYYGKNCQYSQCKNYCVNG-ECSITDSG-PKCMCSPGYSGKKCD 484
VNK +G + C+C +C C +C NG C++ P+C C P +G +C+
Sbjct: 1410 CVVNKQSGDVTCNCSDGRVAPSCL--TCVGHCSNGGSCTMNSKMMPECQCPPHMAGPRCE 1467
|
|
| UNIPROTKB|G3V928 Lrp1 "Protein Lrp1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 714 (256.4 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 170/480 (35%), Positives = 250/480 (52%)
Query: 22 LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEP 81
+S L PRG+A+DWV N+YWTD+G + I V+ ++G ++TL++ ++EP+ I ++P
Sbjct: 3955 ISGLKMPRGIAIDWVAGNVYWTDSG---RDVIEVAQMKGENRKTLISGMIDEPHAIVVDP 4011
Query: 82 LSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIE 141
L G M+W++ G P+I A++DG + LV +NIQWPTG+ +DY ++RLYWAD K I
Sbjct: 4012 LRGTMYWSDWGNHPKIETAAMDGTLRETLVQDNIQWPTGLAVDYHNERLYWADAKLSVIG 4071
Query: 142 SINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNL 201
SI LNG D V ++ P+ ++VFED +Y TY N + KI+KFG+S L L
Sbjct: 4072 SIRLNGTDPIVAVDSKRGLSHPFSIDVFEDYIYGVTYINNRVFKIHKFGHSPLINLTGGL 4131
Query: 202 NRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGKMS 261
+ ASDV++ ++KQ VTN CD K C LC+ PS C CP+ + L+ +G +
Sbjct: 4132 SHASDVVLYHQHKQPE-VTNPCDRKKCEW--LCLLSPSGPVCTCPNG--KRLD--NG--T 4182
Query: 262 CKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNVTSGKMSCKVAPART---CYLD--- 315
C P+ T D P + T C + + LN + C+ P T C LD
Sbjct: 4183 CVPVPSPTPPPDAPR---PGTCTLQCFNGGSCFLNARR-QPKCRCQPRYTGDKCELDQCW 4238
Query: 316 --C-NHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCP--CLNQGMCYPDLTHPEPTYK 370
C N GTC P C C F G C + +C C N C + + +P +
Sbjct: 4239 EYCHNGGTCAASPSGMPTCRCPTGFTGPRCTQ---QVCAGYCANNSTCTVNQGN-QP--Q 4292
Query: 371 CHCAPSYTGARCESRICENKCHNGGTC-IAT--TQTCVCPPGFTGDTCQQCLNLKCQNGG 427
C C P + G RC+ R C C N GTC +A ++ C C F G C+ +C G
Sbjct: 4293 CRCLPGFLGDRCQYRQCSGFCENFGTCQMAADGSRQCRCTVYFEGTRCEVNKCSRCLQGA 4352
Query: 428 VCVNKTTG-LECDCPKFYYGKNCQYSQCKNYCVNG-ECSITDSG-PKCMCSPGYSGKKCD 484
VNK TG + C+C +C C ++C NG C++ P+C C P +G +C+
Sbjct: 4353 CVVNKQTGDVTCNCTDGRVAPSCL--TCIDHCSNGGSCTMNSKMMPECQCPPHMTGPRCE 4410
|
|
| UNIPROTKB|Q07954 LRP1 "Prolow-density lipoprotein receptor-related protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 711 (255.3 bits), Expect = 3.6e-68, P = 3.6e-68
Identities = 166/482 (34%), Positives = 243/482 (50%)
Query: 22 LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEP 81
+S L PRG+A+DWV N+YWTD+G + I V+ ++G ++TL++ ++EP+ I ++P
Sbjct: 3954 ISGLKMPRGIAIDWVAGNVYWTDSG---RDVIEVAQMKGENRKTLISGMIDEPHAIVVDP 4010
Query: 82 LSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIE 141
L G M+W++ G P+I A++DG + LV +NIQWPTG+ +DY ++RLYWAD K I
Sbjct: 4011 LRGTMYWSDWGNHPKIETAAMDGTLRETLVQDNIQWPTGLAVDYHNERLYWADAKLSVIG 4070
Query: 142 SINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNL 201
SI LNG D V ++ P+ ++VFED +Y TY N + KI+KFG+S L L
Sbjct: 4071 SIRLNGTDPIVAADSKRGLSHPFSIDVFEDYIYGVTYINNRVFKIHKFGHSPLVNLTGGL 4130
Query: 202 NRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGKMS 261
+ ASDV++ ++KQ VTN CD K C LC+ PS C CP+ + N T +
Sbjct: 4131 SHASDVVLYHQHKQPE-VTNPCDRKKCEW--LCLLSPSGPVCTCPNGKRLD-NGTCVPVP 4186
Query: 262 CKVAPAR-----TCYLDCNHG-----NLPSSHTCLCPDHLTEELNVTSGKMSCKVAPART 311
P TC L C +G N C C T + C++
Sbjct: 4187 SPTPPPDAPRPGTCNLQCFNGGSCFLNARRQPKCRCQPRYTGD--------KCELDQ--- 4235
Query: 312 CYLDC-NHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCP--CLNQGMCYPDLTHPEPT 368
C+ C N GTC P C C F G C + +C C N C + + +P
Sbjct: 4236 CWEHCRNGGTCAASPSGMPTCRCPTGFTGPKCTQ---QVCAGYCANNSTCTVNQGN-QP- 4290
Query: 369 YKCHCAPSYTGARCESRICENKCHNGGTC-IAT--TQTCVCPPGFTGDTCQQCLNLKCQN 425
+C C P + G RC+ R C C N GTC +A ++ C C F G C+ +C
Sbjct: 4291 -QCRCLPGFLGDRCQYRQCSGYCENFGTCQMAADGSRQCRCTAYFEGSRCEVNKCSRCLE 4349
Query: 426 GGVCVNKTTG-LECDCPKFYYGKNCQYSQCKNYCVNG-ECSITDSG-PKCMCSPGYSGKK 482
G VNK +G + C+C +C C +C NG C++ P+C C P +G +
Sbjct: 4350 GACVVNKQSGDVTCNCTDGRVAPSCL--TCVGHCSNGGSCTMNSKMMPECQCPPHMTGPR 4407
Query: 483 CD 484
C+
Sbjct: 4408 CE 4409
|
|
| UNIPROTKB|E1BGJ0 LRP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 711 (255.3 bits), Expect = 3.6e-68, P = 3.6e-68
Identities = 166/482 (34%), Positives = 245/482 (50%)
Query: 22 LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEP 81
+S L PRG+A+DWV N+YWTD+G + I V+ ++G ++TL++ ++EP+ I ++P
Sbjct: 3954 ISGLKMPRGIAIDWVAGNVYWTDSG---RDVIEVAQMKGENRKTLISGMIDEPHAIVVDP 4010
Query: 82 LSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIE 141
L G M+W++ G P+I A++DG + LV +NIQWPTG+ +DY ++RLYWAD K I
Sbjct: 4011 LRGTMYWSDWGNHPKIETAAMDGTLRETLVQDNIQWPTGLAVDYHNERLYWADAKLSVIG 4070
Query: 142 SINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNL 201
SI LNG D V ++ P+ ++VFED +Y TY N + KI+KFG+S L L
Sbjct: 4071 SIRLNGTDPIVAADSKRGLSHPFSIDVFEDYIYGVTYINNRVFKIHKFGHSPLINLTGGL 4130
Query: 202 NRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGKMS 261
+ ASDV++ ++KQ VTN CD K C LC+ PS C CP+ + N T +
Sbjct: 4131 SHASDVVLYHQHKQPE-VTNPCDRKKCEW--LCLLSPSGPVCTCPNGKRLD-NGTCVAVP 4186
Query: 262 CKVAPAR-----TCYLDCNHG-----NLPSSHTCLCPDHLTEELNVTSGKMSCKVAPART 311
P TC L C +G N C C T + C++
Sbjct: 4187 SPTPPPDAPRPGTCNLQCFNGGSCFLNARRQPKCRCQPRYTGD--------KCELDQ--- 4235
Query: 312 CYLDC-NHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCP--CLNQGMCYPDLTHPEPT 368
C+ C N GTC P C C F G C + +C C N C + + +P
Sbjct: 4236 CWEHCRNGGTCAASPSGMPTCRCPTGFTGPKCTQ---QVCAGYCANNSTCTVNQGN-QP- 4290
Query: 369 YKCHCAPSYTGARCESRICENKCHNGGTC-IAT--TQTCVCPPGFTGDTCQQCLNLKCQN 425
+C C P + G RC+ R C + C N GTC +A ++ C C F G C+ +C +
Sbjct: 4291 -QCRCLPGFLGDRCQYRQCSDYCENFGTCQMAADGSRQCRCTAYFEGPRCEVNKCSRCLD 4349
Query: 426 GGVCVNKTTG-LECDCPKFYYGKNCQYSQCKNYCVNG-ECSITDSG-PKCMCSPGYSGKK 482
G VNK +G + C+C +C C +C NG C++ P+C C P +G +
Sbjct: 4350 GACVVNKQSGDVTCNCSDGRVAPSCL--TCIGHCSNGGSCTMNSKMMPECQCPPHMAGPR 4407
Query: 483 CD 484
C+
Sbjct: 4408 CE 4409
|
|
| UNIPROTKB|F1SL63 F1SL63 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 705 (253.2 bits), Expect = 3.7e-68, P = 3.7e-68
Identities = 168/480 (35%), Positives = 248/480 (51%)
Query: 22 LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEP 81
+S L PRG+A+DWV N+YWTD+G + I V+ ++G ++TL++ ++EP+ I ++P
Sbjct: 1223 ISGLKMPRGIAIDWVAGNVYWTDSG---RDVIEVAQMKGENRKTLISGMIDEPHAIVVDP 1279
Query: 82 LSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIE 141
L G M+W++ G P+I A++DG + LV +NIQWPTG +DY ++RLYWAD K I
Sbjct: 1280 LRGTMYWSDWGNHPKIETAAMDGTLRETLVQDNIQWPTGRAVDYHNERLYWADAKLSVIG 1339
Query: 142 SINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNL 201
SI LNG D V ++ P+ ++VFED +Y TY N + KI+KFG+S L L
Sbjct: 1340 SIRLNGTDPIVAADSKRGLSHPFSIDVFEDYIYGVTYINNRVFKIHKFGHSPLINLTGGL 1399
Query: 202 NRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGKMS 261
+ ASDV++ ++KQ VTN CD K C LC+ PS C CP+ + L+ +G +
Sbjct: 1400 SHASDVVLYHQHKQPE-VTNPCDRKKCEW--LCLLSPSGPVCTCPNG--KRLD--NG--T 1450
Query: 262 CKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNVTSGKMSCKVAPART---CYLD--- 315
C P+ T D P + C + + LN + C+ P T C LD
Sbjct: 1451 CVAVPSPTLPPDAPR---PGTCNLQCFNGGSCFLNARR-QPKCRCQPRYTGDKCELDQCW 1506
Query: 316 --C-NHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCP--CLNQGMCYPDLTHPEPTYK 370
C N GTC P C C F G C + +C C N C + + +P +
Sbjct: 1507 EYCRNGGTCAASPSGMPTCRCPTGFTGPKCTQ---QVCAGHCANNSTCTVNQGN-QP--Q 1560
Query: 371 CHCAPSYTGARCESRICENKCHNGGTC-IAT--TQTCVCPPGFTGDTCQQCLNLKCQNGG 427
C C P + G RC+ R C C N GTC +A ++ C C F G C+ +C +G
Sbjct: 1561 CRCLPGFLGDRCQYRQCSGYCENFGTCQMAADGSRQCRCTAYFEGARCEVNKCSRCLDGA 1620
Query: 428 VCVNKTTG-LECDCPKFYYGKNCQYSQCKNYCVNG-ECSITDSG-PKCMCSPGYSGKKCD 484
VNK +G + C+C +C C +C NG C++ P+C C P +G +C+
Sbjct: 1621 CVVNKQSGDVTCNCSDGRVAPSCL--TCVGHCSNGGSCTMNSKMMPECQCPPHMAGPRCE 1678
|
|
| UNIPROTKB|E2R4Q1 LRP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 710 (255.0 bits), Expect = 4.6e-68, P = 4.6e-68
Identities = 167/482 (34%), Positives = 244/482 (50%)
Query: 22 LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEP 81
+S L PRG+AVDWV N+YWTD+G + I V+ ++G ++TL++ ++EP+ I ++P
Sbjct: 3938 ISGLKMPRGIAVDWVAGNVYWTDSG---RDVIEVAQMKGENRKTLISGMIDEPHAIVVDP 3994
Query: 82 LSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIE 141
L G M+W++ G P+I A++DG + LV +NIQWPTG+ +DY ++RLYWAD K I
Sbjct: 3995 LRGTMYWSDWGNHPKIETAAMDGTLRETLVQDNIQWPTGLAVDYHNERLYWADAKLSVIG 4054
Query: 142 SINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNL 201
SI LNG D V ++ P+ ++VFED +Y TY N + KI+KFG+S L L
Sbjct: 4055 SIRLNGTDPIVAADSKRGLSHPFSIDVFEDYIYGVTYINNRVFKIHKFGHSPLINLTGGL 4114
Query: 202 NRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGKMS 261
+ ASDV++ ++KQ VTN CD K C LC+ PS C CP+ + N T +
Sbjct: 4115 SHASDVVLYHQHKQPE-VTNPCDRKKCEW--LCLLSPSGPVCTCPNGKRLD-NGTCVAVP 4170
Query: 262 CKVAPAR-----TCYLDCNHG-----NLPSSHTCLCPDHLTEELNVTSGKMSCKVAPART 311
P TC L C +G N C C T + C++
Sbjct: 4171 SPTPPPDAPRPGTCNLQCFNGGSCFLNARRQPKCRCQPRYTGD--------KCELDQ--- 4219
Query: 312 CYLDC-NHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCP--CLNQGMCYPDLTHPEPT 368
C+ C N GTC P C C F G C + +C C N C + + +P
Sbjct: 4220 CWEYCRNGGTCAASPSGMPTCRCPTGFTGPKCTQ---QVCAGYCANNSTCTVNQGN-QP- 4274
Query: 369 YKCHCAPSYTGARCESRICENKCHNGGTC-IAT--TQTCVCPPGFTGDTCQQCLNLKCQN 425
+C C P + G RC+ R C C N GTC +A ++ C C F G C+ +C +
Sbjct: 4275 -QCRCLPGFLGDRCQYRQCSGYCENFGTCHMAADGSRQCRCTAYFEGPRCEVNKCSRCLD 4333
Query: 426 GGVCVNKTTG-LECDCPKFYYGKNCQYSQCKNYCVNG-ECSITDSG-PKCMCSPGYSGKK 482
G VNK +G + C+C +C C +C NG C++ P+C C P +G +
Sbjct: 4334 GACVVNKQSGDVTCNCSDGRVAPSCL--TCVGHCSNGGSCTMNSKMMPECQCPPHMAGPR 4391
Query: 483 CD 484
C+
Sbjct: 4392 CE 4393
|
|
| UNIPROTKB|J9P315 LRP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 710 (255.0 bits), Expect = 4.6e-68, P = 4.6e-68
Identities = 167/482 (34%), Positives = 244/482 (50%)
Query: 22 LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEP 81
+S L PRG+AVDWV N+YWTD+G + I V+ ++G ++TL++ ++EP+ I ++P
Sbjct: 3954 ISGLKMPRGIAVDWVAGNVYWTDSG---RDVIEVAQMKGENRKTLISGMIDEPHAIVVDP 4010
Query: 82 LSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIE 141
L G M+W++ G P+I A++DG + LV +NIQWPTG+ +DY ++RLYWAD K I
Sbjct: 4011 LRGTMYWSDWGNHPKIETAAMDGTLRETLVQDNIQWPTGLAVDYHNERLYWADAKLSVIG 4070
Query: 142 SINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNL 201
SI LNG D V ++ P+ ++VFED +Y TY N + KI+KFG+S L L
Sbjct: 4071 SIRLNGTDPIVAADSKRGLSHPFSIDVFEDYIYGVTYINNRVFKIHKFGHSPLINLTGGL 4130
Query: 202 NRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGKMS 261
+ ASDV++ ++KQ VTN CD K C LC+ PS C CP+ + N T +
Sbjct: 4131 SHASDVVLYHQHKQPE-VTNPCDRKKCEW--LCLLSPSGPVCTCPNGKRLD-NGTCVAVP 4186
Query: 262 CKVAPAR-----TCYLDCNHG-----NLPSSHTCLCPDHLTEELNVTSGKMSCKVAPART 311
P TC L C +G N C C T + C++
Sbjct: 4187 SPTPPPDAPRPGTCNLQCFNGGSCFLNARRQPKCRCQPRYTGD--------KCELDQ--- 4235
Query: 312 CYLDC-NHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCP--CLNQGMCYPDLTHPEPT 368
C+ C N GTC P C C F G C + +C C N C + + +P
Sbjct: 4236 CWEYCRNGGTCAASPSGMPTCRCPTGFTGPKCTQ---QVCAGYCANNSTCTVNQGN-QP- 4290
Query: 369 YKCHCAPSYTGARCESRICENKCHNGGTC-IAT--TQTCVCPPGFTGDTCQQCLNLKCQN 425
+C C P + G RC+ R C C N GTC +A ++ C C F G C+ +C +
Sbjct: 4291 -QCRCLPGFLGDRCQYRQCSGYCENFGTCHMAADGSRQCRCTAYFEGPRCEVNKCSRCLD 4349
Query: 426 GGVCVNKTTG-LECDCPKFYYGKNCQYSQCKNYCVNG-ECSITDSG-PKCMCSPGYSGKK 482
G VNK +G + C+C +C C +C NG C++ P+C C P +G +
Sbjct: 4350 GACVVNKQSGDVTCNCSDGRVAPSCL--TCVGHCSNGGSCTMNSKMMPECQCPPHMAGPR 4407
Query: 483 CD 484
C+
Sbjct: 4408 CE 4409
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 713 | |||
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 2e-12 | |
| pfam00058 | 42 | pfam00058, Ldl_recept_b, Low-density lipoprotein r | 9e-11 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 5e-09 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 2e-07 | |
| pfam00058 | 42 | pfam00058, Ldl_recept_b, Low-density lipoprotein r | 2e-05 | |
| pfam00058 | 42 | pfam00058, Ldl_recept_b, Low-density lipoprotein r | 0.004 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-12
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 110 LVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDR 150
L+ + + P G+ +D+ RLYW D IE NL+G +R
Sbjct: 3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 9e-11
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 84 GRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDY 125
GR++WT+ ++ IS A ++G ++ L ++QWP GI +D
Sbjct: 1 GRLYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAVDP 42
|
This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 5e-09
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 21 VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEG 60
+ S L P G+AVDW+ LYWTD G I V+ L+G
Sbjct: 4 LSSGLGHPNGLAVDWIEGRLYWTDWGLDV---IEVANLDG 40
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-07
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 64 RTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKN 106
RTLL++GL P +A++ + GR++WT+ G I A++DG N
Sbjct: 1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWG-LDVIEVANLDGTN 42
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-05
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 39 NLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEP 81
LYWTD+ R+S I V+ L G +RTL + L P IA++P
Sbjct: 2 RLYWTDSSLRAS--ISVADLNGSDRRTLFSEDLQWPNGIAVDP 42
|
This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42 |
| >gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.004
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 2 ASISSGNVTRVKREMNLKTVLS-NLHDPRGVAVDW 35
ASIS ++ R +T+ S +L P G+AVD
Sbjct: 12 ASISVADLNGSDR----RTLFSEDLQWPNGIAVDP 42
|
This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 713 | |||
| KOG1214|consensus | 1289 | 100.0 | ||
| KOG1214|consensus | 1289 | 99.91 | ||
| KOG1215|consensus | 877 | 99.88 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.75 | |
| KOG4289|consensus | 2531 | 99.73 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.71 | |
| KOG4289|consensus | 2531 | 99.7 | ||
| KOG0994|consensus | 1758 | 99.66 | ||
| KOG1225|consensus | 525 | 99.65 | ||
| KOG1217|consensus | 487 | 99.64 | ||
| KOG1217|consensus | 487 | 99.61 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.61 | |
| KOG1219|consensus | 4289 | 99.61 | ||
| KOG0994|consensus | 1758 | 99.56 | ||
| KOG1219|consensus | 4289 | 99.54 | ||
| KOG1225|consensus | 525 | 99.5 | ||
| KOG1215|consensus | 877 | 99.47 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.45 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.42 | |
| KOG1226|consensus | 783 | 99.38 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.17 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.06 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.05 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.04 | |
| KOG4659|consensus | 1899 | 99.04 | ||
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 99.03 | |
| KOG1520|consensus | 376 | 98.98 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.98 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.97 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.95 | |
| KOG4659|consensus | 1899 | 98.94 | ||
| KOG1226|consensus | 783 | 98.9 | ||
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.81 | |
| KOG4260|consensus | 350 | 98.81 | ||
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 98.76 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 98.74 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.73 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.68 | |
| KOG1836|consensus | 1705 | 98.68 | ||
| KOG1836|consensus | 1705 | 98.68 | ||
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 98.63 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 98.61 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 98.57 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.55 | |
| KOG4499|consensus | 310 | 98.54 | ||
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 98.53 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.52 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 98.51 | |
| KOG4260|consensus | 350 | 98.5 | ||
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 98.4 | |
| KOG1520|consensus | 376 | 98.4 | ||
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 98.37 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.36 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 98.35 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.32 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 98.31 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.27 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.24 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 98.23 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 98.19 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 98.16 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 98.06 | |
| KOG4499|consensus | 310 | 98.05 | ||
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 98.01 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 97.95 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.94 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.89 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.85 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 97.82 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 97.82 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 97.81 | |
| PF06247 | 197 | Plasmod_Pvs28: Plasmodium ookinete surface protein | 97.74 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 97.74 | |
| PF00008 | 32 | EGF: EGF-like domain This is a sub-family of the P | 97.73 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 97.73 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 97.7 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 97.69 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 97.69 | |
| PHA03099 | 139 | epidermal growth factor-like protein (EGF-like pro | 97.68 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.66 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.66 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 97.64 | |
| PF07645 | 42 | EGF_CA: Calcium-binding EGF domain; InterPro: IPR0 | 97.6 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 97.6 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 97.59 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.57 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.57 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.55 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 97.54 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.54 | |
| PF00008 | 32 | EGF: EGF-like domain This is a sub-family of the P | 97.53 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 97.47 | |
| smart00179 | 39 | EGF_CA Calcium-binding EGF-like domain. | 97.43 | |
| PF06247 | 197 | Plasmod_Pvs28: Plasmodium ookinete surface protein | 97.43 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.42 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.4 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.38 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 97.38 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.31 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.29 | |
| PF07645 | 42 | EGF_CA: Calcium-binding EGF domain; InterPro: IPR0 | 97.26 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.24 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 97.22 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.19 | |
| KOG1218|consensus | 316 | 97.15 | ||
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 97.09 | |
| PF12947 | 36 | EGF_3: EGF domain; InterPro: IPR024731 This entry | 97.08 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 97.05 | |
| cd00054 | 38 | EGF_CA Calcium-binding EGF-like domain, present in | 97.02 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 96.98 | |
| smart00179 | 39 | EGF_CA Calcium-binding EGF-like domain. | 96.98 | |
| KOG1218|consensus | 316 | 96.97 | ||
| KOG1446|consensus | 311 | 96.95 | ||
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 96.95 | |
| PF14670 | 36 | FXa_inhibition: Coagulation Factor Xa inhibitory s | 96.93 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 96.89 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 96.71 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 96.65 | |
| cd00053 | 36 | EGF Epidermal growth factor domain, found in epide | 96.63 | |
| smart00181 | 35 | EGF Epidermal growth factor-like domain. | 96.61 | |
| cd00054 | 38 | EGF_CA Calcium-binding EGF-like domain, present in | 96.49 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.47 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.42 | |
| PF07974 | 32 | EGF_2: EGF-like domain; InterPro: IPR013111 A sequ | 96.41 | |
| PF12947 | 36 | EGF_3: EGF domain; InterPro: IPR024731 This entry | 96.4 | |
| cd00053 | 36 | EGF Epidermal growth factor domain, found in epide | 96.34 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.31 | |
| PF12661 | 13 | hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E | 96.29 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 96.28 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 96.15 | |
| smart00181 | 35 | EGF Epidermal growth factor-like domain. | 96.14 | |
| PF07974 | 32 | EGF_2: EGF-like domain; InterPro: IPR013111 A sequ | 96.1 | |
| smart00051 | 63 | DSL delta serrate ligand. | 95.97 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 95.95 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 95.9 | |
| PF12661 | 13 | hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E | 95.89 | |
| PF12662 | 24 | cEGF: Complement Clr-like EGF-like | 95.87 | |
| KOG0318|consensus | 603 | 95.85 | ||
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 95.72 | |
| KOG0279|consensus | 315 | 95.72 | ||
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 95.66 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 95.65 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 95.58 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.54 | |
| KOG3512|consensus | 592 | 95.31 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 95.3 | |
| KOG0291|consensus | 893 | 95.1 | ||
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 95.07 | |
| PTZ00421 | 493 | coronin; Provisional | 95.05 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 94.92 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 94.89 | |
| KOG1446|consensus | 311 | 94.85 | ||
| smart00051 | 63 | DSL delta serrate ligand. | 94.75 | |
| PF12662 | 24 | cEGF: Complement Clr-like EGF-like | 94.72 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 94.71 | |
| KOG4378|consensus | 673 | 94.71 | ||
| KOG0273|consensus | 524 | 94.69 | ||
| KOG0268|consensus | 433 | 94.63 | ||
| KOG0285|consensus | 460 | 94.56 | ||
| COG4247 | 364 | Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph | 94.48 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 94.35 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 94.23 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 94.19 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 94.19 | |
| KOG4649|consensus | 354 | 94.19 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 93.93 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 93.84 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 93.73 | |
| PF12955 | 103 | DUF3844: Domain of unknown function (DUF3844); Int | 93.5 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 93.44 | |
| PTZ00382 | 96 | Variant-specific surface protein (VSP); Provisiona | 93.43 | |
| KOG0310|consensus | 487 | 93.36 | ||
| PF14339 | 236 | DUF4394: Domain of unknown function (DUF4394) | 93.22 | |
| KOG0266|consensus | 456 | 93.18 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 93.06 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 93.02 | |
| KOG0294|consensus | 362 | 92.96 | ||
| PF01034 | 64 | Syndecan: Syndecan domain; InterPro: IPR001050 The | 92.95 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 92.88 | |
| KOG0289|consensus | 506 | 92.86 | ||
| KOG0289|consensus | 506 | 92.67 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 92.59 | |
| KOG0315|consensus | 311 | 92.55 | ||
| KOG3914|consensus | 390 | 92.33 | ||
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 92.32 | |
| KOG0286|consensus | 343 | 92.24 | ||
| KOG0315|consensus | 311 | 92.24 | ||
| KOG0266|consensus | 456 | 92.02 | ||
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 92.0 | |
| KOG3512|consensus | 592 | 92.0 | ||
| PTZ00420 | 568 | coronin; Provisional | 91.77 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 91.74 | |
| KOG2139|consensus | 445 | 91.71 | ||
| COG4247 | 364 | Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph | 91.64 | |
| PF14670 | 36 | FXa_inhibition: Coagulation Factor Xa inhibitory s | 91.54 | |
| KOG0273|consensus | 524 | 91.54 | ||
| KOG0318|consensus | 603 | 91.44 | ||
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 91.38 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 91.28 | |
| KOG0291|consensus | 893 | 90.85 | ||
| PHA02887 | 126 | EGF-like protein; Provisional | 90.65 | |
| KOG0268|consensus | 433 | 90.49 | ||
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 90.28 | |
| KOG4441|consensus | 571 | 90.14 | ||
| smart00180 | 46 | EGF_Lam Laminin-type epidermal growth factor-like | 90.11 | |
| KOG0319|consensus | 775 | 90.09 | ||
| PHA02713 | 557 | hypothetical protein; Provisional | 90.06 | |
| KOG1539|consensus | 910 | 90.06 | ||
| smart00284 | 255 | OLF Olfactomedin-like domains. | 89.72 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 89.51 | |
| KOG2110|consensus | 391 | 89.48 | ||
| PF15102 | 146 | TMEM154: TMEM154 protein family | 89.48 | |
| KOG4441|consensus | 571 | 89.47 | ||
| KOG2106|consensus | 626 | 89.37 | ||
| COG3211 | 616 | PhoX Predicted phosphatase [General function predi | 89.18 | |
| KOG0650|consensus | 733 | 89.03 | ||
| KOG0276|consensus | 794 | 88.99 | ||
| KOG4328|consensus | 498 | 88.89 | ||
| PF12946 | 37 | EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 | 88.86 | |
| PHA02887 | 126 | EGF-like protein; Provisional | 88.73 | |
| PTZ00214 | 800 | high cysteine membrane protein Group 4; Provisiona | 88.59 | |
| PTZ00421 | 493 | coronin; Provisional | 88.51 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 88.5 | |
| KOG4328|consensus | 498 | 88.44 | ||
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 88.43 | |
| PF00053 | 49 | Laminin_EGF: Laminin EGF-like (Domains III and V); | 88.33 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 88.29 | |
| PTZ00420 | 568 | coronin; Provisional | 88.22 | |
| KOG2110|consensus | 391 | 88.04 | ||
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 88.02 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 87.98 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 87.96 | |
| KOG0272|consensus | 459 | 87.87 | ||
| KOG0285|consensus | 460 | 87.84 | ||
| cd00055 | 50 | EGF_Lam Laminin-type epidermal growth factor-like | 87.63 | |
| KOG0279|consensus | 315 | 87.44 | ||
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 87.23 | |
| PHA03099 | 139 | epidermal growth factor-like protein (EGF-like pro | 87.09 | |
| KOG0282|consensus | 503 | 86.91 | ||
| KOG3607|consensus | 716 | 86.86 | ||
| PF00053 | 49 | Laminin_EGF: Laminin EGF-like (Domains III and V); | 86.59 | |
| cd00055 | 50 | EGF_Lam Laminin-type epidermal growth factor-like | 86.14 | |
| KOG1274|consensus | 933 | 86.05 | ||
| KOG2111|consensus | 346 | 85.7 | ||
| KOG0292|consensus | 1202 | 85.67 | ||
| PF01102 | 122 | Glycophorin_A: Glycophorin A; InterPro: IPR001195 | 85.59 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 85.19 | |
| KOG0270|consensus | 463 | 85.14 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 84.97 | |
| KOG0293|consensus | 519 | 84.71 | ||
| PF12946 | 37 | EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 | 84.49 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 84.46 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 84.29 | |
| KOG0296|consensus | 399 | 84.21 | ||
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 84.2 | |
| KOG0293|consensus | 519 | 83.82 | ||
| KOG2919|consensus | 406 | 83.79 | ||
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 83.25 | |
| KOG0646|consensus | 476 | 82.55 | ||
| PF02009 | 299 | Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00 | 82.47 | |
| KOG0310|consensus | 487 | 82.18 | ||
| KOG0286|consensus | 343 | 82.01 | ||
| PF09910 | 339 | DUF2139: Uncharacterized protein conserved in arch | 81.66 | |
| KOG2048|consensus | 691 | 81.5 | ||
| KOG0272|consensus | 459 | 80.99 | ||
| cd01475 | 224 | vWA_Matrilin VWA_Matrilin: In cartilaginous plate, | 80.67 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 80.6 | |
| KOG2111|consensus | 346 | 80.56 | ||
| KOG4378|consensus | 673 | 80.49 |
| >KOG1214|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=297.27 Aligned_cols=238 Identities=26% Similarity=0.541 Sum_probs=210.2
Q ss_pred CcccCCceeEEEccCcc-c-EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEE
Q psy6570 2 ASISSGNVTRVKREMNL-K-TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIAL 79 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~-~-~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iav 79 (713)
+|+...+|.|..+.|.+ + .+.++|..|+||||||++++|||+|+ ...+|.+..|||+.+++|+..+|..|++|++
T Consensus 1042 tDv~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS---~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~ 1118 (1289)
T KOG1214|consen 1042 TDVAGRSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDS---VLDKIEVALLDGSERKVLFYTDLVNPRAIVV 1118 (1289)
T ss_pred eecCCCccccccccCCCCceeecccCCCccceeeeeccceeeeecc---ccchhheeecCCceeeEEEeecccCcceEEe
Confidence 57778899999999865 3 44779999999999999999999999 8999999999999999999999999999999
Q ss_pred cCCCCcEEEEccCC-CCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCC
Q psy6570 80 EPLSGRMFWTELGI-KPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTED 158 (713)
Q Consensus 80 D~~~~~ly~td~~~-~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~ 158 (713)
|+..|.||||||+. +++|++.+|||+++++|+.+++..|+||+||+..+.|-|+|.+++|+.-+.++|..|++++..
T Consensus 1119 D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~~~-- 1196 (1289)
T KOG1214|consen 1119 DPIRGNLYWTDWNRENPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQNN-- 1196 (1289)
T ss_pred ecccCceeeccccccCCcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhhhc--
Confidence 99999999999984 589999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCccceeeeeeCCeEEEEeCCCCcEEEEcccCCCcc-eeeeccccccccEEEEeeccccCCccCCCCCCCCCCCCeeecc
Q psy6570 159 NGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDF-NVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQSALCINL 237 (713)
Q Consensus 159 ~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~i~v~~~~~q~~~~~~~C~~~~C~~~~~C~~~ 237 (713)
+.+|++|..+++++|||||..++|..++++++... ..+.....+.++|..+. ++....+++|+.+..+..|+|+..
T Consensus 1197 -LqYPF~itsy~~~fY~TDWk~n~vvsv~~~~~~~td~~~p~~~s~lyGItav~--~~Cp~gstpCSedNGGCqHLCLpg 1273 (1289)
T KOG1214|consen 1197 -LQYPFSITSYADHFYHTDWKRNGVVSVNKHSGQFTDEYLPEQRSHLYGITAVY--PYCPTGSTPCSEDNGGCQHLCLPG 1273 (1289)
T ss_pred -ccCceeeeeccccceeeccccCceEEeeccccccccccccccccceEEEEecc--ccCCCCCCcccccCCcceeecccC
Confidence 78999999999999999999999999999876543 33444555566665554 444578899998876558999977
Q ss_pred CCCceeeeCC
Q psy6570 238 PSSHTCLCPD 247 (713)
Q Consensus 238 ~g~~~C~C~~ 247 (713)
.....|.||+
T Consensus 1274 qngavcecpd 1283 (1289)
T KOG1214|consen 1274 QNGAVCECPD 1283 (1289)
T ss_pred cCCccccCCc
Confidence 7778888875
|
|
| >KOG1214|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-24 Score=222.95 Aligned_cols=205 Identities=22% Similarity=0.336 Sum_probs=177.9
Q ss_pred CCceeEEEccCcc------cE-EecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEE
Q psy6570 6 SGNVTRVKREMNL------KT-VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIA 78 (713)
Q Consensus 6 ~~~I~~~~~~~~~------~~-~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia 78 (713)
..+|.++.+++.. ++ +.-...-|.||+||-+.++|||+|. ....|.+.+|+|...+++++.+|..|.|||
T Consensus 998 g~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv---~g~SI~rasL~G~Ep~ti~n~~L~SPEGiA 1074 (1289)
T KOG1214|consen 998 GQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDV---AGRSISRASLEGAEPETIVNSGLISPEGIA 1074 (1289)
T ss_pred cceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeec---CCCccccccccCCCCceeecccCCCcccee
Confidence 4677788777643 11 2334556899999999999999999 788999999999999999999999999999
Q ss_pred EcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcC--CCCcEEEEeCCCCceeEEEec
Q psy6570 79 LEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADP--KARTIESINLNGKDRFVVYHT 156 (713)
Q Consensus 79 vD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~--~~~~I~~~~~~g~~~~~~~~~ 156 (713)
||+..+.|||||+... +|+++.|||+.+++|+.++|-.|.+|++|+..+.|||+|| .+.+|.+.++||.++++|+..
T Consensus 1075 VDh~~Rn~ywtDS~lD-~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~ 1153 (1289)
T KOG1214|consen 1075 VDHIRRNMYWTDSVLD-KIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINT 1153 (1289)
T ss_pred eeeccceeeeeccccc-hhheeecCCceeeEEEeecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEeec
Confidence 9999999999999888 9999999999999999999999999999999999999998 466899999999999999988
Q ss_pred CCCCccceeeeeeCCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEEeeccc
Q psy6570 157 EDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQ 215 (713)
Q Consensus 157 ~~~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q 215 (713)
...+++.+.++.+...|-|+|.+++++.-+...+..+++ +..++..|++|.-+....+
T Consensus 1154 DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~-i~~~LqYPF~itsy~~~fY 1211 (1289)
T KOG1214|consen 1154 DIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRV-IQNNLQYPFSITSYADHFY 1211 (1289)
T ss_pred ccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchh-hhhcccCceeeeeccccce
Confidence 777777777777788999999999999999887665544 4467888999887777665
|
|
| >KOG1215|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-21 Score=227.68 Aligned_cols=254 Identities=36% Similarity=0.684 Sum_probs=212.0
Q ss_pred CcccCCceeEEEccCcc--cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEE
Q psy6570 2 ASISSGNVTRVKREMNL--KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIAL 79 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~--~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iav 79 (713)
+|....+|.+...++.. .+...++-.|.+||+||+.+.+||+|. ....|.+.+++|..+.+++...+..|+.+++
T Consensus 454 ~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~~lavD~~~~~~y~tDe---~~~~i~v~~~~g~~~~vl~~~~l~~~r~~~v 530 (877)
T KOG1215|consen 454 ADLSDEKICRASQDGSSECELCGDGLCIPEGLAVDWIGDNIYWTDE---GNCLIEVADLDGSSRKVLVSKDLDLPRSIAV 530 (877)
T ss_pred EeccCCeEeeeccCCCccceEeccCccccCcEEEEeccCCceeccc---CCceeEEEEccCCceeEEEecCCCCccceee
Confidence 35566777777777643 334678889999999999999999999 7899999999999988999888899999999
Q ss_pred cCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCC-cEEEEeCCCCceeEEEecCC
Q psy6570 80 EPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKAR-TIESINLNGKDRFVVYHTED 158 (713)
Q Consensus 80 D~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~-~I~~~~~~g~~~~~~~~~~~ 158 (713)
||..+++||+||+..++|.|+.|||..+.+++..++.+|+||++|...+++||+|.... .|.+++++|..++ +... .
T Consensus 531 ~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~-~~~~-~ 608 (877)
T KOG1215|consen 531 DPEKGLMFWTDWGQPPRIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRR-VVDS-E 608 (877)
T ss_pred ccccCeeEEecCCCCchhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceE-Eecc-c
Confidence 99999999999996559999999999999999988999999999999999999999888 7999999999998 2222 2
Q ss_pred CCccceeeeeeCCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEEeeccccCCccCCCCCCCCCCCCeeeccC
Q psy6570 159 NGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLP 238 (713)
Q Consensus 159 ~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~~~~~C~~~~C~~~~~C~~~~ 238 (713)
.+.+|++++++++++||++|....+.+..+..+.....+......+..+.+++...+.....|+|+.+.....++|+..|
T Consensus 609 ~~~~p~~~~~~~~~iyw~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~C~~~n~~c~~KOG~~p 688 (877)
T KOG1215|consen 609 DLPHPFGLSVFEDYIYWTDWSNRAISRAEKHKGSDSRTSRSNLAQPLDIILVHHSSSRPTGVNPCESSNGGCSQLCLPRP 688 (877)
T ss_pred cCCCceEEEEecceeEEeeccccceEeeecccCCcceeeecccCcccceEEEeccccCCCCCCcccccCCCCCeeeecCC
Confidence 48899999999999999999999888888776655123444567777777776655556788999987333389999999
Q ss_pred CCceeeeCCCCccccccCCCCCcc
Q psy6570 239 SSHTCLCPDHLTEELNVTSGKMSC 262 (713)
Q Consensus 239 g~~~C~C~~G~~~~~~~~~~~c~C 262 (713)
...+|.|+.|+. +..+...|.+
T Consensus 689 ~~~~c~c~~~~~--l~~~~~~C~~ 710 (877)
T KOG1215|consen 689 QGSTCACPEGYR--LSPDGKSCSS 710 (877)
T ss_pred CCCeeeCCCCCe--ecCCCCeecC
Confidence 988999999987 4455555655
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.7e-17 Score=162.72 Aligned_cols=200 Identities=23% Similarity=0.337 Sum_probs=148.9
Q ss_pred CCcccCCceeEEEccCcccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcC-----CCCCcc
Q psy6570 1 MASISSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNT-----GLNEPY 75 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~-----~~~~p~ 75 (713)
|+|+..++|+++++++....++. +..|.|++++..++.||+++. ..+.+++++....+.+... .+..|+
T Consensus 16 ~~D~~~~~i~~~~~~~~~~~~~~-~~~~~G~~~~~~~g~l~v~~~-----~~~~~~d~~~g~~~~~~~~~~~~~~~~~~N 89 (246)
T PF08450_consen 16 WVDIPGGRIYRVDPDTGEVEVID-LPGPNGMAFDRPDGRLYVADS-----GGIAVVDPDTGKVTVLADLPDGGVPFNRPN 89 (246)
T ss_dssp EEETTTTEEEEEETTTTEEEEEE-SSSEEEEEEECTTSEEEEEET-----TCEEEEETTTTEEEEEEEEETTCSCTEEEE
T ss_pred EEEcCCCEEEEEECCCCeEEEEe-cCCCceEEEEccCCEEEEEEc-----CceEEEecCCCcEEEEeeccCCCcccCCCc
Confidence 46888999999999987655433 333999999966799999997 3344558776666655543 578899
Q ss_pred eEEEcCCCCcEEEEccCCC-------CeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCC
Q psy6570 76 DIALEPLSGRMFWTELGIK-------PRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGK 148 (713)
Q Consensus 76 ~iavD~~~~~ly~td~~~~-------~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~ 148 (713)
++++|+ +|.||+++.... ++|++++.+++ .+.+ ...+..|+||+++++++.|||+|+..++|++++++..
T Consensus 90 D~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~~~-~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~ 166 (246)
T PF08450_consen 90 DVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDGK-VTVV-ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD 166 (246)
T ss_dssp EEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTSE-EEEE-EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT
T ss_pred eEEEcC-CCCEEEEecCCCccccccccceEEECCCCe-EEEE-ecCcccccceEECCcchheeecccccceeEEEecccc
Confidence 999997 688999986532 46999999944 3333 3468899999999999999999999999999998643
Q ss_pred -----ceeEEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEE
Q psy6570 149 -----DRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLIL 210 (713)
Q Consensus 149 -----~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~ 210 (713)
.++++.........|.||+++ +++||++.+..++|+++++. +.....+......|+.+.+-
T Consensus 167 ~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 167 GGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp TCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred ccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 234554443333469999998 68999999999999999988 55555565666678877764
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4289|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-17 Score=180.73 Aligned_cols=120 Identities=29% Similarity=0.716 Sum_probs=79.3
Q ss_pred cccCCCCcc-CCCCCCCCCCCCcEEcCCCC--CeeccCCCCCCCCCCcccCCCCCCCCC---CCCCCCCCCCCC----cE
Q psy6570 496 KCMCSPGYS-GKKCDTCTCLNGGTCIPNSK--NNVCKCPSQYTGRRCECAVGDTSCASL---ANKCTPNYCSNN----GT 565 (713)
Q Consensus 496 ~C~C~~G~~-g~~C~~~~C~~~g~C~~~~~--~~~C~C~~g~~G~~C~~~~~~~~c~~~---~~~C~~~~C~~~----~~ 565 (713)
.|.|.+ |. -+.|...||.+.|+|+..++ +|+|.|++||.|..||... +..|+.. ...|.+..|... ..
T Consensus 1707 sC~c~~-~~C~~vC~lnpc~~~g~Cv~sp~a~GY~C~C~~g~~G~~Ce~~~-dq~CPrGWWG~P~CgpC~CavsKgfdp~ 1784 (2531)
T KOG4289|consen 1707 SCPCDP-YNCVDVCSLNPCENQGTCVRSPGAHGYTCECPPGYTGPYCELRA-DQPCPRGWWGFPTCGPCNCAVSKGFDPD 1784 (2531)
T ss_pred cccCCC-CCccchhcccccccCceeecCCCCCceeEECCCcccCcchhhhc-cCCCCCcccCCCCccCccccccCCCCCC
Confidence 566766 31 34566778999999987655 8999999999999999765 5556543 334555555432 36
Q ss_pred EeecCCCceeeCCCCCcCC--CCCcCCCCCCCCCCCCCCCeEecCCCCcceeecCCCcccCCCCc
Q psy6570 566 CVLIEGKPSCKCLPPYSGK--QCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSE 628 (713)
Q Consensus 566 C~~~~g~~~C~C~~G~~G~--~C~~~~~~~~C~~~C~~~g~C~~~~~g~~~C~C~~G~~G~~C~~ 628 (713)
|..+.| +|+|++.++-. .|..+ .|.. =+..-.|. .+++|.|++|-.|+.|..
T Consensus 1785 CnKt~G--~CqCKe~hy~~~~~Cl~C----dC~~-Gs~Sr~C~----adGqC~C~pgaiGRqCdr 1838 (2531)
T KOG4289|consen 1785 CNKTNG--QCQCKENHYRPIGSCLPC----DCYF-GSDSRECD----ADGQCPCKPGAIGRQCDR 1838 (2531)
T ss_pred ccccCc--ceeeccccccCCCcceee----cccc-CCCccccc----CCCcCCCCCccccccccc
Confidence 877766 69999987622 25432 2210 01123454 335799999999998864
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-15 Score=181.21 Aligned_cols=189 Identities=17% Similarity=0.281 Sum_probs=147.0
Q ss_pred CCcccCCceeEEEccCcccEEec---------------CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEE
Q psy6570 1 MASISSGNVTRVKREMNLKTVLS---------------NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRT 65 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~~~~~~~---------------~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~ 65 (713)
|||..+++|+++++++.....+. .+..|.||++|..++.|||+|. .+++|.++++.+..+++
T Consensus 584 VaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt---~n~~Ir~id~~~~~V~t 660 (1057)
T PLN02919 584 ISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT---ENHALREIDFVNETVRT 660 (1057)
T ss_pred EEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC---CCceEEEEecCCCEEEE
Confidence 67889999999999886533221 2567999999988888999999 78899999998777666
Q ss_pred EEcC----------------CCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEe--------------CCC
Q psy6570 66 LLNT----------------GLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVD--------------NNI 115 (713)
Q Consensus 66 l~~~----------------~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~--------------~~~ 115 (713)
+... .+..|.+|++|+.++.||++|.+++ +|+++++.+....++.. ..+
T Consensus 661 lag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~-~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~ 739 (1057)
T PLN02919 661 LAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH-QIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSF 739 (1057)
T ss_pred EeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC-eEEEEECCCCeEEEEecCCccccCCCCccccccc
Confidence 5321 1568999999998999999999888 99999886554433321 135
Q ss_pred CCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEec-------------------CCCCccceeeeee-CCeEEE
Q psy6570 116 QWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHT-------------------EDNGYKPYKLEVF-EDNLYF 175 (713)
Q Consensus 116 ~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~-------------------~~~~~~p~~i~~~-~~~ly~ 175 (713)
..|+||++++.+++||++|..+++|++++++.....++... ...+.+|.+|+++ ++.||+
T Consensus 740 ~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYV 819 (1057)
T PLN02919 740 AQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYV 819 (1057)
T ss_pred cCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEE
Confidence 78999999998889999999999999999876444333210 0124578999987 468999
Q ss_pred EeCCCCcEEEEcccCCCc
Q psy6570 176 STYRTNNILKINKFGNSD 193 (713)
Q Consensus 176 td~~~~~i~~~~~~~~~~ 193 (713)
+|+.+++|.+++..++..
T Consensus 820 ADs~N~rIrviD~~tg~v 837 (1057)
T PLN02919 820 ADSYNHKIKKLDPATKRV 837 (1057)
T ss_pred EECCCCEEEEEECCCCeE
Confidence 999999999999765543
|
|
| >KOG4289|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=175.35 Aligned_cols=87 Identities=41% Similarity=1.045 Sum_probs=59.3
Q ss_pred CCCCceeeCCCCcccCCCCccC--CC-CCCCCCCEEEc--CCCeeeCCCCCccCCCC------cCCCCCCCCCcEeccC-
Q psy6570 365 PEPTYKCHCAPSYTGARCESRI--CE-NKCHNGGTCIA--TTQTCVCPPGFTGDTCQ------QCLNLKCQNGGVCVNK- 432 (713)
Q Consensus 365 ~~~~~~C~C~~G~~g~~C~~~~--C~-~~C~~~~~C~~--~~~~C~C~~g~~g~~C~------~C~~~~C~~~~~C~~~- 432 (713)
+.++++|.|++||+|+.|+..+ |- .+|.++|+|.. ++|+|.|.+||+|+.|| .|.+..|.++++|++.
T Consensus 1218 pvnglrCrCPpGFTgd~CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~tGehCEvs~~agrCvpGvC~nggtC~~~~ 1297 (2531)
T KOG4289|consen 1218 PVNGLRCRCPPGFTGDYCETEIDLCYSGPCGNNGRCRSREGGYTCECRPGFTGEHCEVSARAGRCVPGVCKNGGTCVNLL 1297 (2531)
T ss_pred ccCceeEeCCCCCCcccccchhHhhhcCCCCCCCceEEecCceeEEecCCccccceeeecccCccccceecCCCEEeecC
Confidence 3446777777777777776543 53 67777777766 67777777777777777 5777777777777664
Q ss_pred CCCccccCCCC-CcCCCCcc
Q psy6570 433 TTGLECDCPKF-YYGKNCQY 451 (713)
Q Consensus 433 ~~~~~C~C~~G-~~g~~C~~ 451 (713)
++++.|.|+.| |++..|+.
T Consensus 1298 nggf~c~Cp~ge~e~prC~v 1317 (2531)
T KOG4289|consen 1298 NGGFCCHCPYGEFEDPRCEV 1317 (2531)
T ss_pred CCceeccCCCcccCCCceEE
Confidence 44577777776 33555553
|
|
| >KOG0994|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-15 Score=164.31 Aligned_cols=309 Identities=26% Similarity=0.598 Sum_probs=172.9
Q ss_pred Cceee-eCCCCccccccCCCCCcccCCCCCCCCCccCCCCCCCCCCcccCCCCCCCccc-cCCCCccCC-CCCCCC---C
Q psy6570 240 SHTCL-CPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNV-TSGKMSCKV-APARTC---Y 313 (713)
Q Consensus 240 ~~~C~-C~~G~~~~~~~~~~~c~C~~~~~~~~~~~~~~~~~~~~~~c~C~~~~~~~~c~-C~~g~~~~~-~~~~~C---~ 313 (713)
+.+|. |.+|+.|.+..+...|.|..- +.-...| ..-+..|.|..+..+..|. |.+||+|.. |.+-.| +
T Consensus 792 GR~CdqCApGtyGFGPsGCk~CdC~~~--Gs~~~~C----d~~tGQC~C~~g~ygrqCnqCqpG~WgFPeCr~CqCNgHA 865 (1758)
T KOG0994|consen 792 GRRCDQCAPGTYGFGPSGCKACDCNSI--GSLDKYC----DKITGQCQCRPGTYGRQCNQCQPGYWGFPECRPCQCNGHA 865 (1758)
T ss_pred cccccccCCcccCcCCccCcccccccc--ccccccc----cccccceeeccccchhhccccCCCccCCCcCccccccCcc
Confidence 34444 555665555555555555431 1111122 1235678998888777776 999999863 444444 3
Q ss_pred CCCC--CCeeec---CCCCCCee-ecCCCcccCCc--cccCCCCCCCCCC--------ceeeCCCCCCCCCceeeCCCCc
Q psy6570 314 LDCN--HGTCEF---DDDFDPHC-ICQENFYGTYC--EKVNNSMCPCLNQ--------GMCYPDLTHPEPTYKCHCAPSY 377 (713)
Q Consensus 314 ~~C~--~~~C~~---~~~~~~~C-~C~~g~~G~~C--~~~~c~~~~C~~~--------~~C~~~~~~~~~~~~C~C~~G~ 377 (713)
+.|. .|.|+. ...+ +.| .|..||+|+.= ..+-|.++||..+ ..|..... .....|.|.+||
T Consensus 866 ~~Cd~~tGaCi~CqD~T~G-~~CdrCl~GyyGdP~lg~g~~CrPCpCP~gp~Sg~~~A~sC~~d~~--t~~ivC~C~~GY 942 (1758)
T KOG0994|consen 866 DTCDPITGACIDCQDSTTG-HSCDRCLDGYYGDPRLGSGIGCRPCPCPDGPASGRQHADSCYLDTR--TQQIVCHCQEGY 942 (1758)
T ss_pred cccCccccccccccccccc-cchhhhhccccCCcccCCCCCCCCCCCCCCCccchhcccccccccc--ccceeeecccCc
Confidence 4555 345544 3333 667 79999998732 2233666677642 24654322 224679999999
Q ss_pred ccCCCCccCCC-----CCCCCCCEEEcCCCeeeCCCCCc---cCCCCcCCCCCCCCCcEeccCCCCcccc-CCCCCcCC-
Q psy6570 378 TGARCESRICE-----NKCHNGGTCIATTQTCVCPPGFT---GDTCQQCLNLKCQNGGVCVNKTTGLECD-CPKFYYGK- 447 (713)
Q Consensus 378 ~g~~C~~~~C~-----~~C~~~~~C~~~~~~C~C~~g~~---g~~C~~C~~~~C~~~~~C~~~~~~~~C~-C~~G~~g~- 447 (713)
+|.+|+. |. ++=. +|+|. .|.|...-. -..|.. ....| -.|.....+.+|+ |.+||+|.
T Consensus 943 ~G~RCe~--CA~~~fGnP~~-GGtCq----~CeC~~NiD~~d~~aCD~-~TG~C---LkCL~hTeG~hCe~Ck~Gf~GdA 1011 (1758)
T KOG0994|consen 943 SGSRCEI--CADNHFGNPSE-GGTCQ----KCECSNNIDLYDPGACDV-ATGAC---LKCLYHTEGDHCEHCKDGFYGDA 1011 (1758)
T ss_pred cccchhh--hcccccCCccc-CCccc----cccccCCcCccCCCccch-hhchh---hhhhhcccccchhhccccchhHH
Confidence 9999874 32 2221 44443 244443321 112220 00001 1244445566784 99999985
Q ss_pred ---CCccCCCCCCCCCCeeecCCCCCeecCCCCccCCCCCCccccCCCCCCcccCCCCcc----CCCCCCCCCCCCc--E
Q psy6570 448 ---NCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYS----GKKCDTCTCLNGG--T 518 (713)
Q Consensus 448 ---~C~~~~C~~~~~~~~C~~~~~~~~C~C~~G~~g~~C~~~~C~~~~~~~~C~C~~G~~----g~~C~~~~C~~~g--~ 518 (713)
+|+...|...-.+.+|.-..-+.+|.|.|...|..|+. |.+.++ |..|+++.|...+ +
T Consensus 1012 ~~q~CqrC~Cn~LGTn~~~~CDr~tGQCpClpNv~G~~CDq-------------CA~N~w~laSG~GCe~C~Cd~~~~pq 1078 (1758)
T KOG0994|consen 1012 LRQNCQRCVCNFLGTNSTCHCDRFTGQCPCLPNVQGVRCDQ-------------CAENHWNLASGEGCEPCNCDPIGGPQ 1078 (1758)
T ss_pred HHhhhhhheccccccCCccccccccCcCCCCcccccccccc-------------cccchhccccCCCCCccCCCccCCcc
Confidence 56655565432222333333344999999999999986 555553 6677777775422 4
Q ss_pred EcCCCCCeeccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCc----EEeecCCCceeeCCCCCcCCCC
Q psy6570 519 CIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNG----TCVLIEGKPSCKCLPPYSGKQC 586 (713)
Q Consensus 519 C~~~~~~~~C~C~~g~~G~~C~~~~~~~~c~~~~~~C~~~~C~~~~----~C~~~~g~~~C~C~~G~~G~~C 586 (713)
|..- +++|+|.+||-|..|......++-.+ ...|....|...| +|....| +|.|.+|..|..|
T Consensus 1079 CN~f--tGQCqCkpGfGGR~C~qCqel~WGdP-~~~C~aCdCd~rG~~tpQCdr~tG--~C~C~~Gv~G~rC 1145 (1758)
T KOG0994|consen 1079 CNEF--TGQCQCKPGFGGRTCSQCQELYWGDP-NEKCRACDCDPRGIETPQCDRATG--RCVCRPGVGGPRC 1145 (1758)
T ss_pred cccc--ccceeccCCCCCcchhHHHHhhcCCC-CCCceecCCCCCCCCCCCccccCC--ceeecCCCCCcch
Confidence 5433 67999999999999863211111000 1234444454444 3554433 5777777777666
|
|
| >KOG1225|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-15 Score=159.76 Aligned_cols=129 Identities=38% Similarity=0.961 Sum_probs=96.6
Q ss_pred CCcccCCCCccCCCCCCCCCCC----CcEEcCCCCCeeccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEeec
Q psy6570 494 GPKCMCSPGYSGKKCDTCTCLN----GGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLI 569 (713)
Q Consensus 494 ~~~C~C~~G~~g~~C~~~~C~~----~g~C~~~~~~~~C~C~~g~~G~~C~~~~~~~~c~~~~~~C~~~~C~~~~~C~~~ 569 (713)
...|.|+.+|+|..|....|.+ ++.|++ ++|+|++||+|..|+.. .|... |+.++.|++
T Consensus 233 ~~ic~c~~~~~g~~c~~~~C~~~c~~~g~c~~----G~CIC~~Gf~G~dC~e~-----------~Cp~~-cs~~g~~~~- 295 (525)
T KOG1225|consen 233 DGICECPEGYFGPLCSTIYCPGGCTGRGQCVE----GRCICPPGFTGDDCDEL-----------VCPVD-CSGGGVCVD- 295 (525)
T ss_pred CceeecCCceeCCccccccCCCCCcccceEeC----CeEeCCCCCcCCCCCcc-----------cCCcc-cCCCceecC-
Confidence 3467777777777776555543 345653 58899999999888743 35444 777777773
Q ss_pred CCCceeeCCCCCcCCCCCcCCCCCCCCCCCCCCCeEecCCCCcceeecCCCcccCCCCcCCCCCCCCCCCCeecCCCCcc
Q psy6570 570 EGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQNYSL 649 (713)
Q Consensus 570 ~g~~~C~C~~G~~G~~C~~~~~~~~C~~~C~~~g~C~~~~~g~~~C~C~~G~~G~~C~~~~~C~~~C~~~~~C~~~~~~~ 649 (713)
| +|.|++||+|+.|+. ..|+.+|.++|.|++. +|.|.+||+|..|+.. .|.+++.|++
T Consensus 296 -g--~CiC~~g~~G~dCs~----~~cpadC~g~G~Ci~G-----~C~C~~Gy~G~~C~~~-----~C~~~g~cv~----- 353 (525)
T KOG1225|consen 296 -G--ECICNPGYSGKDCSI----RRCPADCSGHGKCIDG-----ECLCDEGYTGELCIQR-----ACSGGGQCVN----- 353 (525)
T ss_pred -C--EeecCCCcccccccc----ccCCccCCCCCcccCC-----ceEeCCCCcCCccccc-----ccCCCceecc-----
Confidence 2 799999999998876 4588889889999833 3999999999888875 2778888887
Q ss_pred CCCCCceeeCCCCcccCC
Q psy6570 650 DPDLKPICICPRGYAGVR 667 (713)
Q Consensus 650 ~~~~~~~C~C~~Gy~G~~ 667 (713)
+ |+|..||.|.+
T Consensus 354 -----g-C~C~~Gw~G~d 365 (525)
T KOG1225|consen 354 -----G-CKCKKGWRGPD 365 (525)
T ss_pred -----C-ceeccCccCCC
Confidence 6 89999998887
|
|
| >KOG1217|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.9e-14 Score=156.56 Aligned_cols=295 Identities=33% Similarity=0.766 Sum_probs=213.7
Q ss_pred CcccCCCCCCCccccCCCCccCCCCCC-CCC-CC---CCCCeeecCC--CCCCeeecCCCcccCCcccc--CCC--CCCC
Q psy6570 284 TCLCPDHLTEELNVTSGKMSCKVAPAR-TCY-LD---CNHGTCEFDD--DFDPHCICQENFYGTYCEKV--NNS--MCPC 352 (713)
Q Consensus 284 ~c~C~~~~~~~~c~C~~g~~~~~~~~~-~C~-~~---C~~~~C~~~~--~~~~~C~C~~g~~G~~C~~~--~c~--~~~C 352 (713)
...+......+.|.|..||.+..++.. +|. .+ +..+.|.... ...+.|.|..||.+..|+.. .|. ..+|
T Consensus 100 ~~~~~~~~~~~~c~c~~g~~~~~~~~~~~C~~~~~~~~~~~~c~~~~~~~~~~~c~C~~g~~~~~~~~~~~~C~~~~~~c 179 (487)
T KOG1217|consen 100 CGECVDCVGSYECTCPPGYQGTPCEGECECVTGPGVCCIDGSCSNGPGSVGPFRCSCTEGYEGEPCETDLDECIQYSSPC 179 (487)
T ss_pred CccccCCCCCceeeCCCccccCcCCcceeecCCCCCeeCchhhcCCCCCCCceeeeeCCCcccccccccccccccCCCCc
Confidence 345556777888999999999887765 573 22 3455777542 24578999999999998864 465 4469
Q ss_pred CCCceeeCCCCCCCCCceeeCCCCcccCCCCccCCCCCCCCCCEEEcCCCeeeCCCCCccCCCC----cCCCCCCCCCcE
Q psy6570 353 LNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQ----QCLNLKCQNGGV 428 (713)
Q Consensus 353 ~~~~~C~~~~~~~~~~~~C~C~~G~~g~~C~~~~C~~~C~~~~~C~~~~~~C~C~~g~~g~~C~----~C~~~~C~~~~~ 428 (713)
.+.+.|.+... +|.|.|++||.+..|+.. .+++.|+.. ..|.+.+|+.+..|+ +|... + +.
T Consensus 180 ~~~~~C~~~~~----~~~C~c~~~~~~~~~~~~------~~~~~c~~~-~~~~~~~g~~~~~c~~~~~~~~~~---~-~~ 244 (487)
T KOG1217|consen 180 QNGGTCVNTGG----SYLCSCPPGYTGSTCETT------GNGGTCVDS-VACSCPPGARGPECEVSIVECASG---D-GT 244 (487)
T ss_pred CCCcccccCCC----CeeEeCCCCccCCcCcCC------CCCceEecc-eeccCCCCCCCCCcccccccccCC---C-Cc
Confidence 99999988765 599999999999988754 455677763 789999999988877 23322 4 89
Q ss_pred eccCCCCccccCCCCCcCCCC----ccCCCCCC--C-CCCeeecCCCCCeecCCCCccCCCCCCccccCCCCCCcccCCC
Q psy6570 429 CVNKTTGLECDCPKFYYGKNC----QYSQCKNY--C-VNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSP 501 (713)
Q Consensus 429 C~~~~~~~~C~C~~G~~g~~C----~~~~C~~~--~-~~~~C~~~~~~~~C~C~~G~~g~~C~~~~C~~~~~~~~C~C~~ 501 (713)
|.+..++|.|.|++||.+..+ .+++|... + +++.|.+..+.|.|.|++||.|..| ..|.. ...|..
T Consensus 245 c~~~~~~~~C~~~~g~~~~~~~~~~~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~~~--~~~~~-----~~~C~~ 317 (487)
T KOG1217|consen 245 CVNTVGSYTCRCPEGYTGDACVTCVDVDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGRLC--TECVD-----VDECSP 317 (487)
T ss_pred ccccCCceeeeCCCCccccccceeeeccccCCCCccCCCCeeecCCCcceeeCCCCCCCCCC--ccccc-----cccccc
Confidence 999999999999999998873 36677664 3 4689999998899999999999987 11111 112332
Q ss_pred CccCCCCCCCCCCCCcEEc--CCCCCeeccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEee-cCCCceeeCC
Q psy6570 502 GYSGKKCDTCTCLNGGTCI--PNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVL-IEGKPSCKCL 578 (713)
Q Consensus 502 G~~g~~C~~~~C~~~g~C~--~~~~~~~C~C~~g~~G~~C~~~~~~~~c~~~~~~C~~~~C~~~~~C~~-~~g~~~C~C~ 578 (713)
++.+ .+|.+++.|. .....+.|.|..+|.|..|+.. .++|...+|..++.|.+ ..+++.|.|+
T Consensus 318 ~~~~-----~~c~~g~~C~~~~~~~~~~C~c~~~~~g~~C~~~---------~~~C~~~~~~~~~~c~~~~~~~~~c~~~ 383 (487)
T KOG1217|consen 318 RNAG-----GPCANGGTCNTLGSFGGFRCACGPGFTGRRCEDS---------NDECASSPCCPGGTCVNETPGSYRCACP 383 (487)
T ss_pred cccC-----CcCCCCcccccCCCCCCCCcCCCCCCCCCccccC---------CccccCCccccCCEeccCCCCCeEecCC
Confidence 2222 3466767772 3334678999999999999844 13677777888999999 6889999999
Q ss_pred CCCcCC---CCCcCCCCCCCCCCCCCCCeEecCCCCcceeecCCC
Q psy6570 579 PPYSGK---QCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNG 620 (713)
Q Consensus 579 ~G~~G~---~C~~~~~~~~C~~~C~~~g~C~~~~~g~~~C~C~~G 620 (713)
.+|.+. ......+.++|.. .+.|.+.. +++.|. .++
T Consensus 384 ~~~~~~~~~~~~~~~~~~~c~~----~~~c~~~~-~~~~c~-~~~ 422 (487)
T KOG1217|consen 384 AGFAGKANGDGVGCEDIDECSG----CGDCVNGP-GGGACT-PPG 422 (487)
T ss_pred CccccCCccccccccccccccC----CcceeccC-CCCccc-cCc
Confidence 999984 2222222355533 45676664 778888 773
|
|
| >KOG1217|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.9e-14 Score=157.98 Aligned_cols=254 Identities=36% Similarity=0.923 Sum_probs=168.4
Q ss_pred CceeeCCCCcccCCCCcc-CCCC-C--CCCCCEEEc-----CCCeeeCCCCCccCCCC----cCC--CCCCCCCcEeccC
Q psy6570 368 TYKCHCAPSYTGARCESR-ICEN-K--CHNGGTCIA-----TTQTCVCPPGFTGDTCQ----QCL--NLKCQNGGVCVNK 432 (713)
Q Consensus 368 ~~~C~C~~G~~g~~C~~~-~C~~-~--C~~~~~C~~-----~~~~C~C~~g~~g~~C~----~C~--~~~C~~~~~C~~~ 432 (713)
.+.|.|++||.+..|+.. .|.. + +...+.|.. ..+.|.|..||.+..++ +|. ..+|.+++.|.+.
T Consensus 109 ~~~c~c~~g~~~~~~~~~~~C~~~~~~~~~~~~c~~~~~~~~~~~c~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~ 188 (487)
T KOG1217|consen 109 SYECTCPPGYQGTPCEGECECVTGPGVCCIDGSCSNGPGSVGPFRCSCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNT 188 (487)
T ss_pred CceeeCCCccccCcCCcceeecCCCCCeeCchhhcCCCCCCCceeeeeCCCcccccccccccccccCCCCcCCCcccccC
Confidence 566777777776666543 2431 1 123344443 24667777777766655 454 2347777777777
Q ss_pred CCCccccCCCCCcCCCCccCCCCCCCCCCeeecCCCCCeecCCCCccCCCCCCccccCCCCCCcccCCCCccCCCCCCCC
Q psy6570 433 TTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCT 512 (713)
Q Consensus 433 ~~~~~C~C~~G~~g~~C~~~~C~~~~~~~~C~~~~~~~~C~C~~G~~g~~C~~~~C~~~~~~~~C~C~~G~~g~~C~~~~ 512 (713)
.++|.|.|++||.+..|+.. ...+.|.+. +.|.+.+|+.+..|... ...
T Consensus 189 ~~~~~C~c~~~~~~~~~~~~-----~~~~~c~~~---~~~~~~~g~~~~~c~~~-----------------------~~~ 237 (487)
T KOG1217|consen 189 GGSYLCSCPPGYTGSTCETT-----GNGGTCVDS---VACSCPPGARGPECEVS-----------------------IVE 237 (487)
T ss_pred CCCeeEeCCCCccCCcCcCC-----CCCceEecc---eeccCCCCCCCCCcccc-----------------------ccc
Confidence 77777777777777766532 122334333 34555555555554431 112
Q ss_pred CCCC-cEEcCCCCCeeccCCCCCCCCCC--cccCCCCCCCCCCCCCCCCC-CCCCcEEeecCCCceeeCCCCCcCCCCCc
Q psy6570 513 CLNG-GTCIPNSKNNVCKCPSQYTGRRC--ECAVGDTSCASLANKCTPNY-CSNNGTCVLIEGKPSCKCLPPYSGKQCTE 588 (713)
Q Consensus 513 C~~~-g~C~~~~~~~~C~C~~g~~G~~C--~~~~~~~~c~~~~~~C~~~~-C~~~~~C~~~~g~~~C~C~~G~~G~~C~~ 588 (713)
|..+ ++|.+..+.++|.|++||.+..+ ..+ .++|.... |.++++|++..+.|.|.|++||.|..|..
T Consensus 238 ~~~~~~~c~~~~~~~~C~~~~g~~~~~~~~~~~---------~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~~~~~ 308 (487)
T KOG1217|consen 238 CASGDGTCVNTVGSYTCRCPEGYTGDACVTCVD---------VDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGRLCTE 308 (487)
T ss_pred ccCCCCcccccCCceeeeCCCCccccccceeee---------ccccCCCCccCCCCeeecCCCcceeeCCCCCCCCCCcc
Confidence 3322 78888888899999999998874 111 46777653 88899999999889999999999999822
Q ss_pred CCCCCCC-----CCCCCCCCeE-ecCCCCcceeecCCCcccCCCCcCC-CCC-CCCCCCCeecCCCCccCCCCCceeeCC
Q psy6570 589 REDSPSC-----HNYCDNAGLC-SYSKQGKPVCTCVNGWSGITCSERV-SCA-HFCFNGGTCREQNYSLDPDLKPICICP 660 (713)
Q Consensus 589 ~~~~~~C-----~~~C~~~g~C-~~~~~g~~~C~C~~G~~G~~C~~~~-~C~-~~C~~~~~C~~~~~~~~~~~~~~C~C~ 660 (713)
..+..+| ...|.+++.| .....+.+.|.|..||.|..|+... +|. ..|..++.|... ..+.+.|.|+
T Consensus 309 ~~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~~~g~~C~~~~~~C~~~~~~~~~~c~~~-----~~~~~~c~~~ 383 (487)
T KOG1217|consen 309 CVDVDECSPRNAGGPCANGGTCNTLGSFGGFRCACGPGFTGRRCEDSNDECASSPCCPGGTCVNE-----TPGSYRCACP 383 (487)
T ss_pred ccccccccccccCCcCCCCcccccCCCCCCCCcCCCCCCCCCccccCCccccCCccccCCEeccC-----CCCCeEecCC
Confidence 2222455 3458887788 2222356789999999999999874 787 457888888862 3456899999
Q ss_pred CCcccC
Q psy6570 661 RGYAGV 666 (713)
Q Consensus 661 ~Gy~G~ 666 (713)
.+|.+.
T Consensus 384 ~~~~~~ 389 (487)
T KOG1217|consen 384 AGFAGK 389 (487)
T ss_pred CccccC
Confidence 999985
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.5e-14 Score=166.02 Aligned_cols=188 Identities=16% Similarity=0.193 Sum_probs=143.4
Q ss_pred CCcccCCceeEEEccCcc-cEEe-----------------cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCce
Q psy6570 1 MASISSGNVTRVKREMNL-KTVL-----------------SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK 62 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~~-~~~~-----------------~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~ 62 (713)
|||..+++|+++++.+.. +++. ..+..|.+|++|+.++.|||+|. ..++|.++++.+..
T Consensus 640 VaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~---~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 640 VADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA---GQHQIWEYNISDGV 716 (1057)
T ss_pred EEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC---CCCeEEEEECCCCe
Confidence 467778889999876643 2221 12678999999998899999999 78999999986655
Q ss_pred EEEEEc--------------CCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEe----------------
Q psy6570 63 KRTLLN--------------TGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVD---------------- 112 (713)
Q Consensus 63 ~~~l~~--------------~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~---------------- 112 (713)
..++.. ..+..|.+|++++.+++||++|..++ +|+++++++.....++.
T Consensus 717 v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~-~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 717 TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESS-SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCC-eEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 443321 12568999999998888999999888 99999988654433321
Q ss_pred -----CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecC-----------CCCccceeeeee-CCeEEE
Q psy6570 113 -----NNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTE-----------DNGYKPYKLEVF-EDNLYF 175 (713)
Q Consensus 113 -----~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~-----------~~~~~p~~i~~~-~~~ly~ 175 (713)
..+..|.||++|+ ++.||++|..+++|++++.++.....+.... ..+..|.+|+++ +++||+
T Consensus 796 G~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV 874 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFV 874 (1057)
T ss_pred CchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence 1245799999995 5679999999999999999877665554321 135679999987 568999
Q ss_pred EeCCCCcEEEEcccCCCc
Q psy6570 176 STYRTNNILKINKFGNSD 193 (713)
Q Consensus 176 td~~~~~i~~~~~~~~~~ 193 (713)
+|..+++|.+++...+..
T Consensus 875 aDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 875 ADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EECCCCEEEEEECCCCcc
Confidence 999999999999876543
|
|
| >KOG1219|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-15 Score=175.23 Aligned_cols=155 Identities=30% Similarity=0.624 Sum_probs=116.3
Q ss_pred CCCCCCCCCCCCCCCCcEEeecC-CCceeeCCCCCcCCCCCcCCCCCCC-CCCCCCCCeEecCCCCcceeecCCCcccCC
Q psy6570 548 CASLANKCTPNYCSNNGTCVLIE-GKPSCKCLPPYSGKQCTEREDSPSC-HNYCDNAGLCSYSKQGKPVCTCVNGWSGIT 625 (713)
Q Consensus 548 c~~~~~~C~~~~C~~~~~C~~~~-g~~~C~C~~G~~G~~C~~~~~~~~C-~~~C~~~g~C~~~~~g~~~C~C~~G~~G~~ 625 (713)
|....+.|..+||.++|+|...+ |+|+|.|++-|.|+.|+.. ...| .++|..+|+|+... ++|.|.|+.||+|..
T Consensus 3860 C~l~~d~C~~npCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~--~epC~snPC~~GgtCip~~-n~f~CnC~~gyTG~~ 3936 (4289)
T KOG1219|consen 3860 CSLLTDPCNDNPCQHGGTCISQPKGGYKCKCPSQYSGNHCEID--LEPCASNPCLTGGTCIPFY-NGFLCNCPNGYTGKR 3936 (4289)
T ss_pred ccccccccccCcccCCCEecCCCCCceEEeCcccccCcccccc--cccccCCCCCCCCEEEecC-CCeeEeCCCCccCce
Confidence 54446889999999999999875 6899999999999999864 5788 88999999998776 889999999999999
Q ss_pred CCcC--CCCC-CCCCCCCeecCCCCccCCCCCceeeCCCCcccCCCCccccccccccccc-cchhHHHHHHHHHHHHHHh
Q psy6570 626 CSER--VSCA-HFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTLVHYISKKQSYV-NSHISSILILILLLITVGG 701 (713)
Q Consensus 626 C~~~--~~C~-~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 701 (713)
|+.. ++|. ++|.++|.|.+ ..++|.|.|.+||.|..|....+.....-.+. .+-+++|++++++ |++++
T Consensus 3937 Ce~~Gi~eCs~n~C~~gg~C~n------~~gsf~CncT~g~~gr~c~~~~pni~~~~~~~gkaEli~I~V~l~~-ifilv 4009 (4289)
T KOG1219|consen 3937 CEARGISECSKNVCGTGGQCIN------IPGSFHCNCTPGILGRTCCAEKPNILSTVLWLGKAELIIIIVLLAL-IFILV 4009 (4289)
T ss_pred eecccccccccccccCCceeec------cCCceEeccChhHhcccCccccCccccccchhcccceeehhHHHHH-HHHHH
Confidence 9963 5698 89999999987 55679999999999999966655544433331 1122222222222 33333
Q ss_pred heeeEEEEecC
Q psy6570 702 IGYYIFRIKMS 712 (713)
Q Consensus 702 ~~~~~~~~~~~ 712 (713)
+++|+.|+|.+
T Consensus 4010 vlf~~crKk~~ 4020 (4289)
T KOG1219|consen 4010 VLFWKCRKKNS 4020 (4289)
T ss_pred HHHHhhhhhcc
Confidence 35666665543
|
|
| >KOG0994|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-14 Score=155.81 Aligned_cols=253 Identities=30% Similarity=0.798 Sum_probs=152.5
Q ss_pred ceeeCCCCcccCCCCccC----------CC-CCCCC----CCEEEcCCCeeeCCCCCccCCCCcC----------CCCCC
Q psy6570 369 YKCHCAPSYTGARCESRI----------CE-NKCHN----GGTCIATTQTCVCPPGFTGDTCQQC----------LNLKC 423 (713)
Q Consensus 369 ~~C~C~~G~~g~~C~~~~----------C~-~~C~~----~~~C~~~~~~C~C~~g~~g~~C~~C----------~~~~C 423 (713)
..|+|.|+..|.+|+... |. -.|.. +..|...++.|.|.+|-.|..|..| .+..|
T Consensus 782 GqCqCkPnVVGR~CdqCApGtyGFGPsGCk~CdC~~~Gs~~~~Cd~~tGQC~C~~g~ygrqCnqCqpG~WgFPeCr~CqC 861 (1758)
T KOG0994|consen 782 GQCQCKPNVVGRRCDQCAPGTYGFGPSGCKACDCNSIGSLDKYCDKITGQCQCRPGTYGRQCNQCQPGYWGFPECRPCQC 861 (1758)
T ss_pred ceecccCccccccccccCCcccCcCCccCccccccccccccccccccccceeeccccchhhccccCCCccCCCcCccccc
Confidence 479999999998887421 11 11222 2345557889999888888777643 33345
Q ss_pred CCCc-----------EeccCCCCccc-cCCCCCcCC-------CCccCCCCCCC-----CCCeeecCC--CCCeecCCCC
Q psy6570 424 QNGG-----------VCVNKTTGLEC-DCPKFYYGK-------NCQYSQCKNYC-----VNGECSITD--SGPKCMCSPG 477 (713)
Q Consensus 424 ~~~~-----------~C~~~~~~~~C-~C~~G~~g~-------~C~~~~C~~~~-----~~~~C~~~~--~~~~C~C~~G 477 (713)
+.++ .|.+..+++.| .|..||+|+ .|+...|.... ....|...+ ....|.|.+|
T Consensus 862 NgHA~~Cd~~tGaCi~CqD~T~G~~CdrCl~GyyGdP~lg~g~~CrPCpCP~gp~Sg~~~A~sC~~d~~t~~ivC~C~~G 941 (1758)
T KOG0994|consen 862 NGHADTCDPITGACIDCQDSTTGHSCDRCLDGYYGDPRLGSGIGCRPCPCPDGPASGRQHADSCYLDTRTQQIVCHCQEG 941 (1758)
T ss_pred cCcccccCccccccccccccccccchhhhhccccCCcccCCCCCCCCCCCCCCCccchhccccccccccccceeeecccC
Confidence 4443 25566778889 599999864 57766666542 112344322 2258999999
Q ss_pred ccCCCCCCc-----------------cccCC----------------------CCCCcc-cCCCCccCC----CCCCCCC
Q psy6570 478 YSGKKCDTC-----------------TCLNG----------------------DSGPKC-MCSPGYSGK----KCDTCTC 513 (713)
Q Consensus 478 ~~g~~C~~~-----------------~C~~~----------------------~~~~~C-~C~~G~~g~----~C~~~~C 513 (713)
|+|.+|+.+ .|.+. ..+..| .|.+||+|+ .|..+.|
T Consensus 942 Y~G~RCe~CA~~~fGnP~~GGtCq~CeC~~NiD~~d~~aCD~~TG~CLkCL~hTeG~hCe~Ck~Gf~GdA~~q~CqrC~C 1021 (1758)
T KOG0994|consen 942 YSGSRCEICADNHFGNPSEGGTCQKCECSNNIDLYDPGACDVATGACLKCLYHTEGDHCEHCKDGFYGDALRQNCQRCVC 1021 (1758)
T ss_pred ccccchhhhcccccCCcccCCccccccccCCcCccCCCccchhhchhhhhhhcccccchhhccccchhHHHHhhhhhhec
Confidence 999888643 23332 223455 588999985 4666656
Q ss_pred CCC-----cEEcCCCCCeeccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCc--EEeecCCCceeeCCCCCcCCCC
Q psy6570 514 LNG-----GTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNG--TCVLIEGKPSCKCLPPYSGKQC 586 (713)
Q Consensus 514 ~~~-----g~C~~~~~~~~C~C~~g~~G~~C~~~~~~~~c~~~~~~C~~~~C~~~~--~C~~~~g~~~C~C~~G~~G~~C 586 (713)
.-- +.|.. -+++|.|.+...|.+|+......+-...+..|++..|...+ +|...+| +|+|.+||-|+.|
T Consensus 1022 n~LGTn~~~~CDr--~tGQCpClpNv~G~~CDqCA~N~w~laSG~GCe~C~Cd~~~~pqCN~ftG--QCqCkpGfGGR~C 1097 (1758)
T KOG0994|consen 1022 NFLGTNSTCHCDR--FTGQCPCLPNVQGVRCDQCAENHWNLASGEGCEPCNCDPIGGPQCNEFTG--QCQCKPGFGGRTC 1097 (1758)
T ss_pred cccccCCcccccc--ccCcCCCCcccccccccccccchhccccCCCCCccCCCccCCcccccccc--ceeccCCCCCcch
Confidence 422 23433 36789999999999987332222222224456655565432 6776665 7999999999998
Q ss_pred CcCCC------CCCC-CCCCCCCC----eEecCCCCcceeecCCCcccCCCCc
Q psy6570 587 TERED------SPSC-HNYCDNAG----LCSYSKQGKPVCTCVNGWSGITCSE 628 (713)
Q Consensus 587 ~~~~~------~~~C-~~~C~~~g----~C~~~~~g~~~C~C~~G~~G~~C~~ 628 (713)
....+ ...| .-.|+..| +|.. .+++|.|.+|..|..|..
T Consensus 1098 ~qCqel~WGdP~~~C~aCdCd~rG~~tpQCdr---~tG~C~C~~Gv~G~rCdq 1147 (1758)
T KOG0994|consen 1098 SQCQELYWGDPNEKCRACDCDPRGIETPQCDR---ATGRCVCRPGVGGPRCDQ 1147 (1758)
T ss_pred hHHHHhhcCCCCCCceecCCCCCCCCCCCccc---cCCceeecCCCCCcchhh
Confidence 75421 1123 12233322 3432 234577777777776643
|
|
| >KOG1219|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-14 Score=165.76 Aligned_cols=112 Identities=38% Similarity=0.888 Sum_probs=101.8
Q ss_pred CCCCCCCCCCCcEEcCCCC-CeeccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEeecCCCceeeCCCCCcCC
Q psy6570 506 KKCDTCTCLNGGTCIPNSK-NNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGK 584 (713)
Q Consensus 506 ~~C~~~~C~~~g~C~~~~~-~~~C~C~~g~~G~~C~~~~~~~~c~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~ 584 (713)
+.|...||+++|+|...+. .|.|.|++-|.|..||.. ...|.++||..+|+|+...+.|.|.|+.||+|.
T Consensus 3865 d~C~~npCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~---------~epC~snPC~~GgtCip~~n~f~CnC~~gyTG~ 3935 (4289)
T KOG1219|consen 3865 DPCNDNPCQHGGTCISQPKGGYKCKCPSQYSGNHCEID---------LEPCASNPCLTGGTCIPFYNGFLCNCPNGYTGK 3935 (4289)
T ss_pred cccccCcccCCCEecCCCCCceEEeCcccccCcccccc---------cccccCCCCCCCCEEEecCCCeeEeCCCCccCc
Confidence 5688889999999998754 899999999999999977 689999999999999999999999999999999
Q ss_pred CCCcCCCCCCC-CCCCCCCCeEecCCCCcceeecCCCcccCCCCc
Q psy6570 585 QCTEREDSPSC-HNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSE 628 (713)
Q Consensus 585 ~C~~~~~~~~C-~~~C~~~g~C~~~~~g~~~C~C~~G~~G~~C~~ 628 (713)
+|+.. .+++| .+.|.++|+|.+.. |+|.|.|.+||.|+.|..
T Consensus 3936 ~Ce~~-Gi~eCs~n~C~~gg~C~n~~-gsf~CncT~g~~gr~c~~ 3978 (4289)
T KOG1219|consen 3936 RCEAR-GISECSKNVCGTGGQCINIP-GSFHCNCTPGILGRTCCA 3978 (4289)
T ss_pred eeecc-cccccccccccCCceeeccC-CceEeccChhHhcccCcc
Confidence 99874 35789 68899999999887 999999999999998844
|
|
| >KOG1225|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-13 Score=144.50 Aligned_cols=175 Identities=31% Similarity=0.782 Sum_probs=125.1
Q ss_pred CCCccccCCCCccCCCCCCCCCCCCC-CCeeecCCCCCCeeecCCCcccCCccccCCCCCCCCCCc-----eeeCCCCCC
Q psy6570 292 TEELNVTSGKMSCKVAPARTCYLDCN-HGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQG-----MCYPDLTHP 365 (713)
Q Consensus 292 ~~~~c~C~~g~~~~~~~~~~C~~~C~-~~~C~~~~~~~~~C~C~~g~~G~~C~~~~c~~~~C~~~~-----~C~~~~~~~ 365 (713)
..+.|.+.+++.+..+....+...+. ++.+.. +.+.+..+|+|..|....+.. ++...+ .+.......
T Consensus 159 ~~~~c~~~~~~~~~~~g~~~~~~~~~~hg~~~~-----~~~l~~~~~s~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~ 232 (525)
T KOG1225|consen 159 KNGVCSLKPNPFGAECGQYKCPNDGSGHGRYYF-----GNCLSGISASGETCNQLGCND-DCFRTGRCREGRCFCTAGFF 232 (525)
T ss_pred hcccccccCCccccccceecCCcCCCCCcccee-----cccccccCcchhhhhcccCCc-cceeccccccCccccccccc
Confidence 34456666766666554444433333 334442 467888888888775433221 222222 221111111
Q ss_pred CCCceeeCCCCcccCCCCccCCCCCCCCCCEEEcCCCeeeCCCCCccCCCCc--CCCCCCCCCcEeccCCCCccccCCCC
Q psy6570 366 EPTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQ--CLNLKCQNGGVCVNKTTGLECDCPKF 443 (713)
Q Consensus 366 ~~~~~C~C~~G~~g~~C~~~~C~~~C~~~~~C~~~~~~C~C~~g~~g~~C~~--C~~~~C~~~~~C~~~~~~~~C~C~~G 443 (713)
.+.|.|+.+|.|..|+...|...|.+++.|.. +.|.|++||+|..|.+ |... |+.++.|++. .|+|++|
T Consensus 233 --~~ic~c~~~~~g~~c~~~~C~~~c~~~g~c~~--G~CIC~~Gf~G~dC~e~~Cp~~-cs~~g~~~~g----~CiC~~g 303 (525)
T KOG1225|consen 233 --DGICECPEGYFGPLCSTIYCPGGCTGRGQCVE--GRCICPPGFTGDDCDELVCPVD-CSGGGVCVDG----ECICNPG 303 (525)
T ss_pred --CceeecCCceeCCccccccCCCCCcccceEeC--CeEeCCCCCcCCCCCcccCCcc-cCCCceecCC----EeecCCC
Confidence 23799999999999997779999998899987 8999999999999994 7766 9999999887 8999999
Q ss_pred CcCCCCccCCCCCCC-CCCeeecCCCCCeecCCCCccCCCCCC
Q psy6570 444 YYGKNCQYSQCKNYC-VNGECSITDSGPKCMCSPGYSGKKCDT 485 (713)
Q Consensus 444 ~~g~~C~~~~C~~~~-~~~~C~~~~~~~~C~C~~G~~g~~C~~ 485 (713)
|.|..|++..|...| .+|.|+ .| +|.|.+||+|..|..
T Consensus 304 ~~G~dCs~~~cpadC~g~G~Ci--~G--~C~C~~Gy~G~~C~~ 342 (525)
T KOG1225|consen 304 YSGKDCSIRRCPADCSGHGKCI--DG--ECLCDEGYTGELCIQ 342 (525)
T ss_pred ccccccccccCCccCCCCCccc--CC--ceEeCCCCcCCcccc
Confidence 999999988888775 468888 33 799999998888876
|
|
| >KOG1215|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-12 Score=154.56 Aligned_cols=207 Identities=20% Similarity=0.364 Sum_probs=172.9
Q ss_pred CCceeEEEccCc-ccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCC
Q psy6570 6 SGNVTRVKREMN-LKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSG 84 (713)
Q Consensus 6 ~~~I~~~~~~~~-~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~ 84 (713)
...|.++.++.. ....+..+..+..+.+|..++.+||+|. ...+|.....++.....+...++-.|.+||+|+..+
T Consensus 416 ~~~ir~~~~~~~~~~~p~~~~~~~~~~d~d~~~~~i~~~d~---~~~~i~~~~~~~~~~~~~~~~g~~~~~~lavD~~~~ 492 (877)
T KOG1215|consen 416 RHDIRRISLDCSDVSRPLEGIKNAVALDFDVLNNRIYWADL---SDEKICRASQDGSSECELCGDGLCIPEGLAVDWIGD 492 (877)
T ss_pred CccceecccCCCcceEEccCCccceEEEEEecCCEEEEEec---cCCeEeeeccCCCccceEeccCccccCcEEEEeccC
Confidence 345556666654 2333555578888999999999999999 789999999999887777778889999999999999
Q ss_pred cEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCC-CCcEEEEeCCCCceeEEEecCCCCccc
Q psy6570 85 RMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPK-ARTIESINLNGKDRFVVYHTEDNGYKP 163 (713)
Q Consensus 85 ~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~-~~~I~~~~~~g~~~~~~~~~~~~~~~p 163 (713)
.+||+|.+.. .|.+.+++|+.+.+++...+..|..+++|+..+.+||+|+. ..+|.+..+||..+..+.......++.
T Consensus 493 ~~y~tDe~~~-~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~~~~~p~g 571 (877)
T KOG1215|consen 493 NIYWTDEGNC-LIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTNGILWPNG 571 (877)
T ss_pred CceecccCCc-eeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeCCccCCCc
Confidence 9999999888 89999999999999998888999999999999999999987 568999999999999998876555566
Q ss_pred eeeeeeCCeEEEEeCCCC-cEEEEcccCCCcceeeeccccccccEEEEeecccc
Q psy6570 164 YKLEVFEDNLYFSTYRTN-NILKINKFGNSDFNVLANNLNRASDVLILQENKQA 216 (713)
Q Consensus 164 ~~i~~~~~~ly~td~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~ 216 (713)
+.+++..+.+||.|.... .|.+++..+.....+....+..|..+.++....++
T Consensus 572 lt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~~~~~~~~~p~~~~~~~~~iyw 625 (877)
T KOG1215|consen 572 LTIDYETDRLYWADAKLDYTIESANMDGQNRRVVDSEDLPHPFGLSVFEDYIYW 625 (877)
T ss_pred ceEEeecceeEEEcccCCcceeeeecCCCceEEeccccCCCceEEEEecceeEE
Confidence 666677899999999888 78888877766654556678889999887776663
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.6e-12 Score=126.38 Aligned_cols=150 Identities=20% Similarity=0.262 Sum_probs=116.6
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCc
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNK 107 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~ 107 (713)
|+|+++|..++.|||+|. ..++|+++++++...+++... .|.+++++..++.||+++.. .+.+.+++....
T Consensus 2 ~Egp~~d~~~g~l~~~D~---~~~~i~~~~~~~~~~~~~~~~---~~~G~~~~~~~g~l~v~~~~---~~~~~d~~~g~~ 72 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDI---PGGRIYRVDPDTGEVEVIDLP---GPNGMAFDRPDGRLYVADSG---GIAVVDPDTGKV 72 (246)
T ss_dssp EEEEEEETTTTEEEEEET---TTTEEEEEETTTTEEEEEESS---SEEEEEEECTTSEEEEEETT---CEEEEETTTTEE
T ss_pred CcceEEECCCCEEEEEEc---CCCEEEEEECCCCeEEEEecC---CCceEEEEccCCEEEEEEcC---ceEEEecCCCcE
Confidence 689999998999999999 789999999999877665433 39999999767999999965 455557776666
Q ss_pred EEEEeC-----CCCCCeeEEEeCCCCeEEEEcCCC--------CcEEEEeCCCCceeEEEecCCCCccceeeeee--CCe
Q psy6570 108 FNLVDN-----NIQWPTGITIDYPSQRLYWADPKA--------RTIESINLNGKDRFVVYHTEDNGYKPYKLEVF--EDN 172 (713)
Q Consensus 108 ~~l~~~-----~~~~p~glavd~~~~~LY~~d~~~--------~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~--~~~ 172 (713)
+.++.. .+..|+.+++|+ .++||+++... ++|++++.++. .+.+... +..|.||++. ++.
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~~~~~~---~~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDGK-VTVVADG---LGFPNGIAFSPDGKT 147 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTSE-EEEEEEE---ESSEEEEEEETTSSE
T ss_pred EEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCCCe-EEEEecC---cccccceEECCcchh
Confidence 666643 577899999996 57799998644 56999999944 4444444 5567777765 668
Q ss_pred EEEEeCCCCcEEEEcccCC
Q psy6570 173 LYFSTYRTNNILKINKFGN 191 (713)
Q Consensus 173 ly~td~~~~~i~~~~~~~~ 191 (713)
||+++...++|++++....
T Consensus 148 lyv~ds~~~~i~~~~~~~~ 166 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDAD 166 (246)
T ss_dssp EEEEETTTTEEEEEEEETT
T ss_pred eeecccccceeEEEecccc
Confidence 9999999999999998643
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-11 Score=125.44 Aligned_cols=200 Identities=21% Similarity=0.325 Sum_probs=136.3
Q ss_pred CCcccCCceeEEEcc-CcccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcC----CCCCcc
Q psy6570 1 MASISSGNVTRVKRE-MNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNT----GLNEPY 75 (713)
Q Consensus 1 vad~~~~~I~~~~~~-~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~----~~~~p~ 75 (713)
++|+..++|+++++. +..++.......+.++.+| ..++|..++. ... +... ..+..++.+... .+.+|+
T Consensus 41 w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d-~~g~Lv~~~~---g~~-~~~~-~~~~~~t~~~~~~~~~~~~r~N 114 (307)
T COG3386 41 WVDILGGRIHRLDPETGKKRVFPSPGGFSSGALID-AGGRLIACEH---GVR-LLDP-DTGGKITLLAEPEDGLPLNRPN 114 (307)
T ss_pred EEeCCCCeEEEecCCcCceEEEECCCCcccceeec-CCCeEEEEcc---ccE-EEec-cCCceeEEeccccCCCCcCCCC
Confidence 468999999999997 4456655666668888888 5578887776 222 2222 234332333321 268899
Q ss_pred eEEEcCCCCcEEEEccC-----C-----CCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeC
Q psy6570 76 DIALEPLSGRMFWTELG-----I-----KPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINL 145 (713)
Q Consensus 76 ~iavD~~~~~ly~td~~-----~-----~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~ 145 (713)
++.+|| .|.+|+++.. . .++|+|++.+|+.. .++...+..|||||++++++.||++|+..++|+++++
T Consensus 115 D~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~-~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~ 192 (307)
T COG3386 115 DGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVV-RLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL 192 (307)
T ss_pred ceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEE-EeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEec
Confidence 999997 5999999877 1 15799999866544 4444458899999999999999999999999999998
Q ss_pred C---CC--ceeEEEecCCCCccceeeeeeCC-eEE-EEeCCCCcEEEEcccCCCcceeeeccccccccEEE
Q psy6570 146 N---GK--DRFVVYHTEDNGYKPYKLEVFED-NLY-FSTYRTNNILKINKFGNSDFNVLANNLNRASDVLI 209 (713)
Q Consensus 146 ~---g~--~~~~~~~~~~~~~~p~~i~~~~~-~ly-~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v 209 (713)
+ |. .+............|.|+.++.+ +|| ++-+...+|.+++++ +.....+......++.+.+
T Consensus 193 d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 193 DPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred CcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 7 31 22222322223568999999854 555 334445589999988 5555555444444444433
|
|
| >KOG1226|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-12 Score=140.13 Aligned_cols=141 Identities=30% Similarity=0.804 Sum_probs=104.2
Q ss_pred eecCCCCccCCCCCCccccCCCCCCcccCCCCccC-----CCCC----CCCCCCCcEEcCCCCCeeccCCCCCC----CC
Q psy6570 471 KCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSG-----KKCD----TCTCLNGGTCIPNSKNNVCKCPSQYT----GR 537 (713)
Q Consensus 471 ~C~C~~G~~g~~C~~~~C~~~~~~~~C~C~~G~~g-----~~C~----~~~C~~~g~C~~~~~~~~C~C~~g~~----G~ 537 (713)
+|.|.+||.|+.|+- +.+-.. +.|. ..+|+..|.|. -++|.|.+... |.
T Consensus 479 ~C~C~~G~~G~~CEC--------------~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~----CGqC~C~~~~~~~i~G~ 540 (783)
T KOG1226|consen 479 QCRCDEGWLGKKCEC--------------STDELSSSEEEDKCRENSDSPVCSGRGDCV----CGQCVCHKPDNGKIYGK 540 (783)
T ss_pred ceecCCCCCCCcccC--------------CccccCcHhHHhhccCCCCCCCcCCCCcEe----CCceEecCCCCCceeee
Confidence 789999999998752 211111 2232 23788999987 46899998776 88
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCCCcEEeecCCCceeeCCCCCcCCCCCcCCCCCCC----CCCCCCCCeEecCCCCcc
Q psy6570 538 RCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSC----HNYCDNAGLCSYSKQGKP 613 (713)
Q Consensus 538 ~C~~~~~~~~c~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~~~C----~~~C~~~g~C~~~~~g~~ 613 (713)
.||++ +..|... ....|+++|.|. -.+|.|.+||+|..|....+.+.| ...|+..|+|....
T Consensus 541 fCECD--nfsC~r~----~g~lC~g~G~C~----CG~CvC~~GwtG~~C~C~~std~C~~~~G~iCSGrG~C~Cg~---- 606 (783)
T KOG1226|consen 541 FCECD--NFSCERH----KGVLCGGHGRCE----CGRCVCNPGWTGSACNCPLSTDTCESSDGQICSGRGTCECGR---- 606 (783)
T ss_pred eeecc--Ccccccc----cCcccCCCCeEe----CCcEEcCCCCccCCCCCCCCCccccCCCCceeCCCceeeCCc----
Confidence 99876 2222211 123699999997 347999999999999887777888 34699999998665
Q ss_pred eeecCCC-cccCCCCcCCCCCCCCCCCCeecC
Q psy6570 614 VCTCVNG-WSGITCSERVSCAHFCFNGGTCRE 644 (713)
Q Consensus 614 ~C~C~~G-~~G~~C~~~~~C~~~C~~~~~C~~ 644 (713)
|.|... |.|..|+..+.|..+|..+..|+.
T Consensus 607 -C~C~~~~~sG~~CE~cptc~~~C~~~~~Cve 637 (783)
T KOG1226|consen 607 -CKCTDPPYSGEFCEKCPTCPDPCAENKSCVE 637 (783)
T ss_pred -eEcCCCCcCcchhhcCCCCCCcccccccchh
Confidence 999876 999999998888888877777754
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.6e-09 Score=110.40 Aligned_cols=184 Identities=16% Similarity=0.192 Sum_probs=127.2
Q ss_pred CcccCCceeEEEccC--cccEE---e-----------cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCce--E
Q psy6570 2 ASISSGNVTRVKREM--NLKTV---L-----------SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK--K 63 (713)
Q Consensus 2 ad~~~~~I~~~~~~~--~~~~~---~-----------~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~--~ 63 (713)
|+...+.|..++++. ..... + ....+|+.+.+++.++.||++|. ..++|.+++++... .
T Consensus 104 any~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl---G~D~v~~~~~~~~~~~l 180 (345)
T PF10282_consen 104 ANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL---GADRVYVYDIDDDTGKL 180 (345)
T ss_dssp EETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET---TTTEEEEEEE-TTS-TE
T ss_pred EEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec---CCCEEEEEEEeCCCceE
Confidence 455667777666654 22111 1 23567899999999999999999 78999999987644 2
Q ss_pred ---EEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecC-CCCcEEEEe---C------CCCCCeeEEEeCCCCeE
Q psy6570 64 ---RTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASID-GKNKFNLVD---N------NIQWPTGITIDYPSQRL 130 (713)
Q Consensus 64 ---~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~d-G~~~~~l~~---~------~~~~p~glavd~~~~~L 130 (713)
..+....-..|+.|+++|..+++|++....+ .|.+++++ .......+. . ....|.+|+|++++++|
T Consensus 181 ~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~-~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~l 259 (345)
T PF10282_consen 181 TPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSN-TVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFL 259 (345)
T ss_dssp EEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTT-EEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEE
T ss_pred EEeeccccccCCCCcEEEEcCCcCEEEEecCCCC-cEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEE
Confidence 1222233478999999998899999987767 88888887 222222221 1 12378999999999999
Q ss_pred EEEcCCCCcEEEEeCCCC--ceeEEEecCCCCccceeeee--eCCeEEEEeCCCCcEEEEccc
Q psy6570 131 YWADPKARTIESINLNGK--DRFVVYHTEDNGYKPYKLEV--FEDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 131 Y~~d~~~~~I~~~~~~g~--~~~~~~~~~~~~~~p~~i~~--~~~~ly~td~~~~~i~~~~~~ 189 (713)
|++....+.|..++++.. ..+.+.........|.+|++ ++++||+++...+.|..++.+
T Consensus 260 yvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 260 YVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999999999999998543 33333322223456877777 588999999998888877653
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-08 Score=107.04 Aligned_cols=187 Identities=20% Similarity=0.256 Sum_probs=135.5
Q ss_pred cCCceeEEEccCcccEE-ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCC
Q psy6570 5 SSGNVTRVKREMNLKTV-LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLS 83 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~~~-~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~ 83 (713)
..+.|..++.......- ......|.+|++|+.++.||+++.+. ..+.|.+++.........+..+ ..|.++++||..
T Consensus 94 ~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~-~~~~vsvid~~t~~~~~~~~vG-~~P~~~a~~p~g 171 (381)
T COG3391 94 DSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN-GNNTVSVIDAATNKVTATIPVG-NTPTGVAVDPDG 171 (381)
T ss_pred CCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEeccc-CCceEEEEeCCCCeEEEEEecC-CCcceEEECCCC
Confidence 35677777755543222 33333999999999999999999832 2588999998765544434333 478999999999
Q ss_pred CcEEEEccCCCCeEEEEecCCCCcEE-E---EeCCCCCCeeEEEeCCCCeEEEEcCCC--CcEEEEeCCCCceeEEEecC
Q psy6570 84 GRMFWTELGIKPRISGASIDGKNKFN-L---VDNNIQWPTGITIDYPSQRLYWADPKA--RTIESINLNGKDRFVVYHTE 157 (713)
Q Consensus 84 ~~ly~td~~~~~~I~~~~~dG~~~~~-l---~~~~~~~p~glavd~~~~~LY~~d~~~--~~I~~~~~~g~~~~~~~~~~ 157 (713)
..+|+++...+ +|..++..+..... - .......|.+++|++...++|+++..+ ++|.+++.............
T Consensus 172 ~~vyv~~~~~~-~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~ 250 (381)
T COG3391 172 NKVYVTNSDDN-TVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV 250 (381)
T ss_pred CeEEEEecCCC-eEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc
Confidence 99999997766 89999877765442 0 123467899999999999999999877 68999888776655542232
Q ss_pred CCCccceeeee--eCCeEEEEeCCCCcEEEEcccCCCcce
Q psy6570 158 DNGYKPYKLEV--FEDNLYFSTYRTNNILKINKFGNSDFN 195 (713)
Q Consensus 158 ~~~~~p~~i~~--~~~~ly~td~~~~~i~~~~~~~~~~~~ 195 (713)
..+ .|.++.+ ++..+|+++...+.|..++........
T Consensus 251 ~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 251 GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceee
Confidence 234 6766665 477899998888889888865544433
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.1e-08 Score=104.79 Aligned_cols=205 Identities=15% Similarity=0.178 Sum_probs=134.0
Q ss_pred CCceeEEEccC---cccEE---ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecC--CceEEE--EE--------
Q psy6570 6 SGNVTRVKREM---NLKTV---LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE--GRKKRT--LL-------- 67 (713)
Q Consensus 6 ~~~I~~~~~~~---~~~~~---~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~--G~~~~~--l~-------- 67 (713)
.+.|..+..+. ..+.+ ......|-.|++|+.++.||+++. ..+.|.+++++ |+.... ++
T Consensus 61 ~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany---~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~ 137 (345)
T PF10282_consen 61 SGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY---GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPN 137 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTSEEEEEEEEEESEEEESS
T ss_pred CCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc---cCCeEEEEEccCCcccceeeeecccCCCCCc
Confidence 45555554443 22222 336678899999999999999998 67888777765 444333 22
Q ss_pred --cCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCC--cEE---EEeCCCCCCeeEEEeCCCCeEEEEcCCCCcE
Q psy6570 68 --NTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKN--KFN---LVDNNIQWPTGITIDYPSQRLYWADPKARTI 140 (713)
Q Consensus 68 --~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~--~~~---l~~~~~~~p~glavd~~~~~LY~~d~~~~~I 140 (713)
+....+|+.+.++|.+++||++|.+.+ +|++++++... ... +....-..|..|+|++..+++|++....+.|
T Consensus 138 ~~rq~~~h~H~v~~~pdg~~v~v~dlG~D-~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v 216 (345)
T PF10282_consen 138 PDRQEGPHPHQVVFSPDGRFVYVPDLGAD-RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTV 216 (345)
T ss_dssp TTTTSSTCEEEEEE-TTSSEEEEEETTTT-EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEE
T ss_pred ccccccccceeEEECCCCCEEEEEecCCC-EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcE
Confidence 123467899999999999999999988 99999998665 211 2123456799999999999999999999999
Q ss_pred EEEeCC--CCceeEEEecC------CCCccceeeeee--CCeEEEEeCCCCcEEEEcccCC-Ccce---eeecccccccc
Q psy6570 141 ESINLN--GKDRFVVYHTE------DNGYKPYKLEVF--EDNLYFSTYRTNNILKINKFGN-SDFN---VLANNLNRASD 206 (713)
Q Consensus 141 ~~~~~~--g~~~~~~~~~~------~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~-~~~~---~~~~~~~~~~~ 206 (713)
..++++ ....+.+.... .....|.+|.+. +.+||+++...+.|..++.... ..++ .+......|.+
T Consensus 217 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~ 296 (345)
T PF10282_consen 217 SVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRH 296 (345)
T ss_dssp EEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEE
T ss_pred EEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccE
Confidence 999887 22222221111 111246666665 7789999999999887776322 2222 22233455777
Q ss_pred EEEEeecc
Q psy6570 207 VLILQENK 214 (713)
Q Consensus 207 i~v~~~~~ 214 (713)
+.+....+
T Consensus 297 ~~~s~~g~ 304 (345)
T PF10282_consen 297 FAFSPDGR 304 (345)
T ss_dssp EEE-TTSS
T ss_pred EEEeCCCC
Confidence 76644433
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-08 Score=102.46 Aligned_cols=151 Identities=21% Similarity=0.311 Sum_probs=112.2
Q ss_pred CCCCCceEEEeccCCeEEEeecC-----C---CCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCC
Q psy6570 24 NLHDPRGVAVDWVGKNLYWTDAG-----G---RSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKP 95 (713)
Q Consensus 24 ~~~~p~gla~D~~~~~ly~td~~-----~---~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~ 95 (713)
.+..|+.+.+|+. +.+|+++.. . +..+.|++++++|...+.+ ...+..|+|||++|.+..||++|+..+
T Consensus 109 ~~~r~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~-~~~~~~~NGla~SpDg~tly~aDT~~~- 185 (307)
T COG3386 109 PLNRPNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL-DDDLTIPNGLAFSPDGKTLYVADTPAN- 185 (307)
T ss_pred CcCCCCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee-cCcEEecCceEECCCCCEEEEEeCCCC-
Confidence 4577999999976 899999986 1 2356799999877665544 355899999999999999999999888
Q ss_pred eEEEEecC---CC--CcEEEE--eCCCCCCeeEEEeCCCCeEE-EEcCCCCcEEEEeCCCCceeEEEecCCCCccceeee
Q psy6570 96 RISGASID---GK--NKFNLV--DNNIQWPTGITIDYPSQRLY-WADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLE 167 (713)
Q Consensus 96 ~I~~~~~d---G~--~~~~l~--~~~~~~p~glavd~~~~~LY-~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~ 167 (713)
+|++++++ |. .+...+ ...-..|.|+++| .++.|| ++.+...+|.+++.+|.....+... ...|..++
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-adG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP---~~~~t~~~ 261 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-ADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLP---VKRPTNPA 261 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEe-CCCCEEEecccCCceEEEECCCCcEEEEEECC---CCCCccce
Confidence 99999887 22 122222 2234789999999 677888 4455556999999998776666543 24566666
Q ss_pred eeC---CeEEEEeCCCC
Q psy6570 168 VFE---DNLYFSTYRTN 181 (713)
Q Consensus 168 ~~~---~~ly~td~~~~ 181 (713)
+-+ +.||+|....+
T Consensus 262 FgG~~~~~L~iTs~~~~ 278 (307)
T COG3386 262 FGGPDLNTLYITSARSG 278 (307)
T ss_pred EeCCCcCEEEEEecCCC
Confidence 654 78999976553
|
|
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.6e-09 Score=118.45 Aligned_cols=177 Identities=20% Similarity=0.297 Sum_probs=123.7
Q ss_pred CCceeEEEccCcccEEec-CCCCC---ceEEEeccCCeEEEeecCCCCCCeEEEEe-cCCce----EEEEEc--------
Q psy6570 6 SGNVTRVKREMNLKTVLS-NLHDP---RGVAVDWVGKNLYWTDAGGRSSNNIMVST-LEGRK----KRTLLN-------- 68 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~-~~~~p---~gla~D~~~~~ly~td~~~~~~~~I~~~~-~~G~~----~~~l~~-------- 68 (713)
-+-|.|+..+|+..+|++ ++..| .-||+||..+.||++|. ..++|+++. +.++. -+++..
T Consensus 383 fNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp---~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~ 459 (1899)
T KOG4659|consen 383 FNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDP---LSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPA 459 (1899)
T ss_pred chheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCC---CcceEEEeccCCccccccCeeEEeccCcCcccc
Confidence 345778999998766633 33444 56999999999999999 667777643 44332 122221
Q ss_pred ------------CCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEE------------------eCCCCCC
Q psy6570 69 ------------TGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLV------------------DNNIQWP 118 (713)
Q Consensus 69 ------------~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~------------------~~~~~~p 118 (713)
..|..|+||||| ..|.|||+|.- +|.+++.+|-....+- ...+.||
T Consensus 460 desCGDGalA~dA~L~~PkGIa~d-k~g~lYfaD~t---~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWP 535 (1899)
T KOG4659|consen 460 DESCGDGALAQDAQLIFPKGIAFD-KMGNLYFADGT---RIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWP 535 (1899)
T ss_pred ccccCcchhcccceeccCCceeEc-cCCcEEEeccc---EEEEeccCceEEEeccCCCCccCccccccccchhheeeecc
Confidence 126789999999 68999999954 6888888874433322 1247899
Q ss_pred eeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecC-----------------CCCccceeeeee-CCeEEEEeCCC
Q psy6570 119 TGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTE-----------------DNGYKPYKLEVF-EDNLYFSTYRT 180 (713)
Q Consensus 119 ~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~-----------------~~~~~p~~i~~~-~~~ly~td~~~ 180 (713)
+.|||||.++.||+.| ++.|++++.++..+.++.... ..+..+.+|++- .+.||+++...
T Consensus 536 T~LaV~Pmdnsl~Vld--~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~ 613 (1899)
T KOG4659|consen 536 TSLAVDPMDNSLLVLD--TNVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDG 613 (1899)
T ss_pred cceeecCCCCeEEEee--cceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccc
Confidence 9999999999999999 677888888776552221110 013345677775 67899999888
Q ss_pred CcEEEEcccCC
Q psy6570 181 NNILKINKFGN 191 (713)
Q Consensus 181 ~~i~~~~~~~~ 191 (713)
.+|-++.+-+.
T Consensus 614 rriNrvr~~~t 624 (1899)
T KOG4659|consen 614 RRINRVRKLST 624 (1899)
T ss_pred hhhhheEEecc
Confidence 88877776544
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-08 Score=108.90 Aligned_cols=159 Identities=16% Similarity=0.197 Sum_probs=112.2
Q ss_pred cEEec--CCCCCceEEEeccCCeEEEeecCC---------CCCCeEEEEec---CCce-EEEEEcCCCCCcceEEEcCCC
Q psy6570 19 KTVLS--NLHDPRGVAVDWVGKNLYWTDAGG---------RSSNNIMVSTL---EGRK-KRTLLNTGLNEPYDIALEPLS 83 (713)
Q Consensus 19 ~~~~~--~~~~p~gla~D~~~~~ly~td~~~---------~~~~~I~~~~~---~G~~-~~~l~~~~~~~p~~iavD~~~ 83 (713)
+++++ .+.+|.+|++|.. ++||+++... ....+|.++.. ||.. ...++.+++..|.+|++.+ +
T Consensus 5 ~l~A~~p~~~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~ 82 (367)
T TIGR02604 5 TLFAAEPLLRNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-G 82 (367)
T ss_pred EEEECCCccCCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-C
Confidence 34444 4999999999965 8899998521 01238888765 4554 3356667789999999985 5
Q ss_pred CcEEEEccCCCCeEEEE-ecCCC-----CcEEEEeC---C----CCCCeeEEEeCCCCeEEEEcCC--------------
Q psy6570 84 GRMFWTELGIKPRISGA-SIDGK-----NKFNLVDN---N----IQWPTGITIDYPSQRLYWADPK-------------- 136 (713)
Q Consensus 84 ~~ly~td~~~~~~I~~~-~~dG~-----~~~~l~~~---~----~~~p~glavd~~~~~LY~~d~~-------------- 136 (713)
+ ||+++.. +|+++ +.+|. .+++|+.. . .+.+++|++++ +++||+++..
T Consensus 83 G-lyV~~~~---~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~ 157 (367)
T TIGR02604 83 G-VYVATPP---DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDE 157 (367)
T ss_pred C-EEEeCCC---eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccC
Confidence 5 9998743 68877 44442 33444431 1 34588999996 5799998752
Q ss_pred -----CCcEEEEeCCCCceeEEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEc
Q psy6570 137 -----ARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKIN 187 (713)
Q Consensus 137 -----~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~ 187 (713)
.+.|++++.+|+..+++... +.+|.+|+++ .+.||++|.......++.
T Consensus 158 ~~~~~~g~i~r~~pdg~~~e~~a~G---~rnp~Gl~~d~~G~l~~tdn~~~~~~~i~ 211 (367)
T TIGR02604 158 SRQGLGGGLFRYNPDGGKLRVVAHG---FQNPYGHSVDSWGDVFFCDNDDPPLCRVT 211 (367)
T ss_pred cccccCceEEEEecCCCeEEEEecC---cCCCccceECCCCCEEEEccCCCceeEEc
Confidence 14699999999888777654 7889999986 678999987666555554
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1520|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-09 Score=108.19 Aligned_cols=147 Identities=18% Similarity=0.241 Sum_probs=111.4
Q ss_pred cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCC----CCCcceEEEcCCCCcEEEEccCCC----
Q psy6570 23 SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG----LNEPYDIALEPLSGRMFWTELGIK---- 94 (713)
Q Consensus 23 ~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~----~~~p~~iavD~~~~~ly~td~~~~---- 94 (713)
..-.+|-|||++..++.||++|. .--++++++.|...+.+.... +.-.+++.||+ +|.|||||+...
T Consensus 112 ~~CGRPLGl~f~~~ggdL~VaDA----YlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~r 186 (376)
T KOG1520|consen 112 PLCGRPLGIRFDKKGGDLYVADA----YLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRR 186 (376)
T ss_pred cccCCcceEEeccCCCeEEEEec----ceeeEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccchh
Confidence 34578999999999999999997 556888899988766555432 44567999998 999999997642
Q ss_pred ------------CeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCce---eEEEecCCC
Q psy6570 95 ------------PRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDR---FVVYHTEDN 159 (713)
Q Consensus 95 ------------~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~---~~~~~~~~~ 159 (713)
+|+.+.+...+..++|+ .++..|+|||++++.+.|.+++....||.++-+.|... ++++.. .
T Consensus 187 d~~~a~l~g~~~GRl~~YD~~tK~~~VLl-d~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~--L 263 (376)
T KOG1520|consen 187 DFVFAALEGDPTGRLFRYDPSTKVTKVLL-DGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEG--L 263 (376)
T ss_pred heEEeeecCCCccceEEecCcccchhhhh-hcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhc--C
Confidence 34555555444444444 48999999999999999999999999999999999766 666653 2
Q ss_pred CccceeeeeeCCeEEEEe
Q psy6570 160 GYKPYKLEVFEDNLYFST 177 (713)
Q Consensus 160 ~~~p~~i~~~~~~ly~td 177 (713)
...|..|...++-=||..
T Consensus 264 PG~PDNIR~~~~G~fWVa 281 (376)
T KOG1520|consen 264 PGYPDNIRRDSTGHFWVA 281 (376)
T ss_pred CCCCcceeECCCCCEEEE
Confidence 457888887754445543
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.1e-08 Score=101.73 Aligned_cols=181 Identities=14% Similarity=0.115 Sum_probs=119.3
Q ss_pred cCCceeEEEcc--CcccEE--ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecC--CceEEEEE-cCCCCCcceE
Q psy6570 5 SSGNVTRVKRE--MNLKTV--LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE--GRKKRTLL-NTGLNEPYDI 77 (713)
Q Consensus 5 ~~~~I~~~~~~--~~~~~~--~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~--G~~~~~l~-~~~~~~p~~i 77 (713)
..+.|..++.+ +..+.+ ......|..|++++.++.||++.. ..+.|.+++++ |...+.+. ......|.++
T Consensus 55 ~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~---~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~ 131 (330)
T PRK11028 55 PEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASY---NANCVSVSPLDKDGIPVAPIQIIEGLEGCHSA 131 (330)
T ss_pred CCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEc---CCCeEEEEEECCCCCCCCceeeccCCCcccEe
Confidence 35666555554 222222 233457999999999999999987 67888888775 33222221 1234679999
Q ss_pred EEcCCCCcEEEEccCCCCeEEEEecCCCCcE------EEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC--Cc
Q psy6570 78 ALEPLSGRMFWTELGIKPRISGASIDGKNKF------NLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNG--KD 149 (713)
Q Consensus 78 avD~~~~~ly~td~~~~~~I~~~~~dG~~~~------~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g--~~ 149 (713)
+++|..++||+++.+.+ +|.+.+++..... .+....-..|.+++|++.+++||+++...+.|..++++. ..
T Consensus 132 ~~~p~g~~l~v~~~~~~-~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~ 210 (330)
T PRK11028 132 NIDPDNRTLWVPCLKED-RIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE 210 (330)
T ss_pred EeCCCCCEEEEeeCCCC-EEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC
Confidence 99998899999998877 8999888642211 111112356899999999999999999889998888863 22
Q ss_pred eeEEEecC---C---CCccceeee--eeCCeEEEEeCCCCcEEEEccc
Q psy6570 150 RFVVYHTE---D---NGYKPYKLE--VFEDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 150 ~~~~~~~~---~---~~~~p~~i~--~~~~~ly~td~~~~~i~~~~~~ 189 (713)
.+.+.... . ...++.+|. .++.+||+++...+.|..++..
T Consensus 211 ~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 211 IECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred EEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEe
Confidence 22222111 0 112343444 4466899998877888777653
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.3e-08 Score=102.11 Aligned_cols=182 Identities=13% Similarity=0.086 Sum_probs=124.3
Q ss_pred CcccCCceeEEEccC--cccEE--ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecC--CceEEEEEc-CCCCCc
Q psy6570 2 ASISSGNVTRVKREM--NLKTV--LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE--GRKKRTLLN-TGLNEP 74 (713)
Q Consensus 2 ad~~~~~I~~~~~~~--~~~~~--~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~--G~~~~~l~~-~~~~~p 74 (713)
|+...+.|+.++++. ..+.+ +.....|..|++++.++.||++.. ..+.|..++.+ |+.. .+.. .....|
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~---~~~~i~~~~~~~~g~l~-~~~~~~~~~~p 82 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR---PEFRVLSYRIADDGALT-FAAESPLPGSP 82 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEEC---CCCcEEEEEECCCCceE-EeeeecCCCCc
Confidence 455678899988853 22222 334568999999999899999987 56778777765 3322 1111 123579
Q ss_pred ceEEEcCCCCcEEEEccCCCCeEEEEecC--CCCcEEEE-eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCcee
Q psy6570 75 YDIALEPLSGRMFWTELGIKPRISGASID--GKNKFNLV-DNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRF 151 (713)
Q Consensus 75 ~~iavD~~~~~ly~td~~~~~~I~~~~~d--G~~~~~l~-~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~ 151 (713)
..|+++|.+++||++....+ +|..++++ |...+.+. ......|.++++++.+++||+++...++|..++++.....
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~-~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 83 THISTDHQGRFLFSASYNAN-CVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred eEEEECCCCCEEEEEEcCCC-eEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 99999999999999987655 77777765 43322221 1234578999999999999999999999999998642211
Q ss_pred -----EEEecCCCCccceeeeee--CCeEEEEeCCCCcEEEEccc
Q psy6570 152 -----VVYHTEDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 152 -----~~~~~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~ 189 (713)
...... ....|..+++. +.+||+++...+.|..++..
T Consensus 162 ~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 162 VAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred cccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 001111 13456666665 56899999888888877764
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.1e-08 Score=103.60 Aligned_cols=183 Identities=20% Similarity=0.236 Sum_probs=131.0
Q ss_pred CCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCC-CCeEEEEecC
Q psy6570 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGI-KPRISGASID 103 (713)
Q Consensus 25 ~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~-~~~I~~~~~d 103 (713)
...|.+++++..+.++|+++. ..+.|.+++.+.......+..+ ..|.+|++|+.++.||+++.+. +..|.+++..
T Consensus 73 ~~~p~~i~v~~~~~~vyv~~~---~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~ 148 (381)
T COG3391 73 GVYPAGVAVNPAGNKVYVTTG---DSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA 148 (381)
T ss_pred CccccceeeCCCCCeEEEecC---CCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCC
Confidence 378999999999999999998 7899999996665544433333 3899999999999999999852 3388888877
Q ss_pred CCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEe---cCCCCccceeeee--eCCeEEEEeC
Q psy6570 104 GKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYH---TEDNGYKPYKLEV--FEDNLYFSTY 178 (713)
Q Consensus 104 G~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~---~~~~~~~p~~i~~--~~~~ly~td~ 178 (713)
.......+. .-..|.++++|+...++|+++...++|..++..+..... .. .......|.++++ ++.++|+++.
T Consensus 149 t~~~~~~~~-vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 149 TNKVTATIP-VGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred CCeEEEEEe-cCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEec
Confidence 554443332 233689999999999999999999999999977765542 11 1113556777776 4678999998
Q ss_pred CC--CcEEEEcccCCCccee--eeccccccccEEEEeecc
Q psy6570 179 RT--NNILKINKFGNSDFNV--LANNLNRASDVLILQENK 214 (713)
Q Consensus 179 ~~--~~i~~~~~~~~~~~~~--~~~~~~~~~~i~v~~~~~ 214 (713)
.+ +.|.+++...+..... ..... .+.++.+....+
T Consensus 227 ~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~ 265 (381)
T COG3391 227 GSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGK 265 (381)
T ss_pred cCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCC
Confidence 87 6888888765544333 22222 455554444333
|
|
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.3e-09 Score=115.67 Aligned_cols=154 Identities=19% Similarity=0.322 Sum_probs=111.4
Q ss_pred CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcC------------------CCCCcceEEEcCCCCc
Q psy6570 24 NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNT------------------GLNEPYDIALEPLSGR 85 (713)
Q Consensus 24 ~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~------------------~~~~p~~iavD~~~~~ 85 (713)
.|..|.||||| ..+.||++|. ..|.++|.+|-...++... .|.+|..|||||.++.
T Consensus 473 ~L~~PkGIa~d-k~g~lYfaD~-----t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdns 546 (1899)
T KOG4659|consen 473 QLIFPKGIAFD-KMGNLYFADG-----TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNS 546 (1899)
T ss_pred eeccCCceeEc-cCCcEEEecc-----cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCe
Confidence 47789999999 5689999997 5788888888655544321 2678999999999999
Q ss_pred EEEEccCCCCeEEEEecCCCCcEEEEe-------------------CCCCCCeeEEEeCCCCeEEEEcCCCCc---EEEE
Q psy6570 86 MFWTELGIKPRISGASIDGKNKFNLVD-------------------NNIQWPTGITIDYPSQRLYWADPKART---IESI 143 (713)
Q Consensus 86 ly~td~~~~~~I~~~~~dG~~~~~l~~-------------------~~~~~p~glavd~~~~~LY~~d~~~~~---I~~~ 143 (713)
||+-|.+ -|+++..++..+..+.. ..+..+..|||. ..+.||++++...+ |+.+
T Consensus 547 l~Vld~n---vvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg-~~G~lyvaEsD~rriNrvr~~ 622 (1899)
T KOG4659|consen 547 LLVLDTN---VVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVG-TDGALYVAESDGRRINRVRKL 622 (1899)
T ss_pred EEEeecc---eEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeec-CCceEEEEeccchhhhheEEe
Confidence 9999965 78888888766522211 124457899999 57899999986655 4555
Q ss_pred eCCCCceeEEEec-----------------------CCCCccceeeeee-CCeEEEEeCCCCcEEEEcc
Q psy6570 144 NLNGKDRFVVYHT-----------------------EDNGYKPYKLEVF-EDNLYFSTYRTNNILKINK 188 (713)
Q Consensus 144 ~~~g~~~~~~~~~-----------------------~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~ 188 (713)
..||. ..++... ...+..|.+|+|. ++.||++|.++-+|..+.+
T Consensus 623 ~tdg~-i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr~Vs~ 690 (1899)
T KOG4659|consen 623 STDGT-ISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIRKVSA 690 (1899)
T ss_pred ccCce-EEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhhhhhh
Confidence 55552 2222111 1136778999987 7789999999888877653
|
|
| >KOG1226|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.2e-09 Score=113.10 Aligned_cols=136 Identities=32% Similarity=0.834 Sum_probs=98.5
Q ss_pred CCCCCcEEcCCCCCeeccCCCCCCCCCCcccCCCCCCCCCCCCCC----CCCCCCCcEEeecCCCceeeCCCCCc----C
Q psy6570 512 TCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCT----PNYCSNNGTCVLIEGKPSCKCLPPYS----G 583 (713)
Q Consensus 512 ~C~~~g~C~~~~~~~~C~C~~g~~G~~C~~~~~~~~c~~~~~~C~----~~~C~~~~~C~~~~g~~~C~C~~G~~----G 583 (713)
.|+.+|+.+ -++|.|.+||.|..||+..+...-....+.|. ..+|++.|.|. -.+|.|++... |
T Consensus 468 ~C~g~G~~~----CG~C~C~~G~~G~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~----CGqC~C~~~~~~~i~G 539 (783)
T KOG1226|consen 468 LCHGNGTFV----CGQCRCDEGWLGKKCECSTDELSSSEEEDKCRENSDSPVCSGRGDCV----CGQCVCHKPDNGKIYG 539 (783)
T ss_pred ccCCCCcEE----ecceecCCCCCCCcccCCccccCcHhHHhhccCCCCCCCcCCCCcEe----CCceEecCCCCCceee
Confidence 354445443 35899999999999997754433221133443 22799999998 34799999877 8
Q ss_pred CCCCcCCCCCCC----CCCCCCCCeEecCCCCcceeecCCCcccCCCCcC---CCCC----CCCCCCCeecCCCCccCCC
Q psy6570 584 KQCTEREDSPSC----HNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSER---VSCA----HFCFNGGTCREQNYSLDPD 652 (713)
Q Consensus 584 ~~C~~~~~~~~C----~~~C~~~g~C~~~~~g~~~C~C~~G~~G~~C~~~---~~C~----~~C~~~~~C~~~~~~~~~~ 652 (713)
+.|+.. ...| ...|.++|.|.-.. |.|.+||+|..|.-. +.|. ..|+..|+|.-
T Consensus 540 ~fCECD--nfsC~r~~g~lC~g~G~C~CG~-----CvC~~GwtG~~C~C~~std~C~~~~G~iCSGrG~C~C-------- 604 (783)
T KOG1226|consen 540 KFCECD--NFSCERHKGVLCGGHGRCECGR-----CVCNPGWTGSACNCPLSTDTCESSDGQICSGRGTCEC-------- 604 (783)
T ss_pred eeeecc--CcccccccCcccCCCCeEeCCc-----EEcCCCCccCCCCCCCCCccccCCCCceeCCCceeeC--------
Confidence 888864 3456 34699999998665 999999999998743 2364 35888888877
Q ss_pred CCceeeCCCC-cccCCCCccc
Q psy6570 653 LKPICICPRG-YAGVRCQTLV 672 (713)
Q Consensus 653 ~~~~C~C~~G-y~G~~C~~~~ 672 (713)
++|+|.+. |.|..||...
T Consensus 605 --g~C~C~~~~~sG~~CE~cp 623 (783)
T KOG1226|consen 605 --GRCKCTDPPYSGEFCEKCP 623 (783)
T ss_pred --CceEcCCCCcCcchhhcCC
Confidence 78999876 9999988643
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.3e-07 Score=88.34 Aligned_cols=176 Identities=14% Similarity=0.187 Sum_probs=103.3
Q ss_pred CCceeEEEccCcc-cEE-ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecC--CceE--E---EEE--cC--CCC
Q psy6570 6 SGNVTRVKREMNL-KTV-LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE--GRKK--R---TLL--NT--GLN 72 (713)
Q Consensus 6 ~~~I~~~~~~~~~-~~~-~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~--G~~~--~---~l~--~~--~~~ 72 (713)
.+.|+.++++|.. +.+ +.+...|+||++- .++.+.+++. ..++|+++..+ ++.. . .+. .. +-.
T Consensus 43 ~~~i~els~~G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~E---r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~ 118 (248)
T PF06977_consen 43 PGEIYELSLDGKVLRRIPLDGFGDYEGITYL-GNGRYVLSEE---RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNK 118 (248)
T ss_dssp TTEEEEEETT--EEEEEE-SS-SSEEEEEE--STTEEEEEET---TTTEEEEEEE----TT--EEEEEEEE---S---SS
T ss_pred CCEEEEEcCCCCEEEEEeCCCCCCceeEEEE-CCCEEEEEEc---CCCcEEEEEEeccccccchhhceEEecccccCCCc
Confidence 5677888888754 223 6778899999995 4456666665 57788877773 2221 1 111 11 123
Q ss_pred CcceEEEcCCCCcEEEEccCCCCeEEEEec--CCCCcEEEEe-------CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEE
Q psy6570 73 EPYDIALEPLSGRMFWTELGIKPRISGASI--DGKNKFNLVD-------NNIQWPTGITIDYPSQRLYWADPKARTIESI 143 (713)
Q Consensus 73 ~p~~iavD~~~~~ly~td~~~~~~I~~~~~--dG~~~~~l~~-------~~~~~p~glavd~~~~~LY~~d~~~~~I~~~ 143 (713)
...||+.|+.+++||++......+|+.++. .+....+... ..+..|.+|++|+.++.||+-...+++|..+
T Consensus 119 G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~ 198 (248)
T PF06977_consen 119 GFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLEL 198 (248)
T ss_dssp --EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEE
Confidence 367999999999999986543335777765 2222222221 1356799999999999999999999999999
Q ss_pred eCCCCceeEEEecC------CCCccceeeeee-CCeEEEEeCCCCcEEEE
Q psy6570 144 NLNGKDRFVVYHTE------DNGYKPYKLEVF-EDNLYFSTYRTNNILKI 186 (713)
Q Consensus 144 ~~~g~~~~~~~~~~------~~~~~p~~i~~~-~~~ly~td~~~~~i~~~ 186 (713)
+.+|..+..+.-.. ..+++|-||+++ ++.||++.- .+..+++
T Consensus 199 d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f 247 (248)
T PF06977_consen 199 DRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PNLFYRF 247 (248)
T ss_dssp -TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TTEEEEE
T ss_pred CCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC-CceEEEe
Confidence 99998665544332 235789999998 678999874 4555554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG4260|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.1e-09 Score=98.02 Aligned_cols=141 Identities=29% Similarity=0.714 Sum_probs=95.8
Q ss_pred cCCCcccCCccccC-CCCCCCCCCceeeCCCCCCCCCceeeCCCCcccCCCCcc--------------CC---CCCCCCC
Q psy6570 333 CQENFYGTYCEKVN-NSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESR--------------IC---ENKCHNG 394 (713)
Q Consensus 333 C~~g~~G~~C~~~~-c~~~~C~~~~~C~~~~~~~~~~~~C~C~~G~~g~~C~~~--------------~C---~~~C~~~ 394 (713)
|++|.+|..|..-. =...||..+|.|... +...|+.+|.|.+||+|+.|... +| ...|.
T Consensus 132 Cp~gtyGpdCl~Cpggser~C~GnG~C~Gd-GsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~~C~-- 208 (350)
T KOG4260|consen 132 CPDGTYGPDCLQCPGGSERPCFGNGSCHGD-GSREGSGKCKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHEGCL-- 208 (350)
T ss_pred cCCCCcCCccccCCCCCcCCcCCCCcccCC-CCCCCCCcccccCCCCCccccccchHHHHhhcccccchhhhhhhhhh--
Confidence 77888888776522 234579999999765 34577889999999999988532 12 22332
Q ss_pred CEEEc-CCCeee-CCCCCccC--CCC---cCC--CCCCCCCcEeccCCCCccccCCCCCcCCCCccCCCCC---C--CCC
Q psy6570 395 GTCIA-TTQTCV-CPPGFTGD--TCQ---QCL--NLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKN---Y--CVN 460 (713)
Q Consensus 395 ~~C~~-~~~~C~-C~~g~~g~--~C~---~C~--~~~C~~~~~C~~~~~~~~C~C~~G~~g~~C~~~~C~~---~--~~~ 460 (713)
+.|.. .+-.|. |..||.-+ .|. +|. +.||..+..|+|+.|+|.|.+.+||.+. .++|.. . ..+
T Consensus 209 ~~Csg~~~k~C~kCkkGW~lde~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~g---~d~C~~~~d~~~~kn 285 (350)
T KOG4260|consen 209 GVCSGESSKGCSKCKKGWKLDEEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKKG---VDECQFCADVCASKN 285 (350)
T ss_pred cccCCCCCCChhhhcccceecccccccHHHHhcCCCCCChhheeecCCCceEecccccccCC---hHHhhhhhhhcccCC
Confidence 24443 334554 88898754 344 554 4578889999999999999999999862 333332 1 356
Q ss_pred CeeecCCCCCeecCCCCcc
Q psy6570 461 GECSITDSGPKCMCSPGYS 479 (713)
Q Consensus 461 ~~C~~~~~~~~C~C~~G~~ 479 (713)
..|.++.+.|+|.|..|+.
T Consensus 286 ~~c~ni~~~~r~v~f~~~~ 304 (350)
T KOG4260|consen 286 RPCMNIDGQYRCVCFSGLI 304 (350)
T ss_pred CCcccCCccEEEEecccce
Confidence 6778888888887777763
|
|
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.9e-08 Score=69.38 Aligned_cols=42 Identities=33% Similarity=0.885 Sum_probs=39.2
Q ss_pred CcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeC
Q psy6570 84 GRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDY 125 (713)
Q Consensus 84 ~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~ 125 (713)
++|||||++..++|+++++||+.+++++..++..|.|||||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 589999998777999999999999999999999999999994
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.3e-07 Score=96.77 Aligned_cols=151 Identities=17% Similarity=0.223 Sum_probs=100.0
Q ss_pred CCceEEEeccCCeEEEeecCCC----------------CCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEc
Q psy6570 27 DPRGVAVDWVGKNLYWTDAGGR----------------SSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTE 90 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~td~~~~----------------~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td 90 (713)
.+.+|++++. ++||+++.... ..+.|++++++|...+++. .++..|.+|++|+ .|.||++|
T Consensus 125 ~~~~l~~gpD-G~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a-~G~rnp~Gl~~d~-~G~l~~td 201 (367)
T TIGR02604 125 SLNSLAWGPD-GWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVA-HGFQNPYGHSVDS-WGDVFFCD 201 (367)
T ss_pred cccCceECCC-CCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEe-cCcCCCccceECC-CCCEEEEc
Confidence 3779999974 79999887310 1257999999998876554 6789999999997 78999998
Q ss_pred cCCCCeEEEEecC------------CC---------CcEE---------------EE-eCCCCCCeeEEEe-------CC
Q psy6570 91 LGIKPRISGASID------------GK---------NKFN---------------LV-DNNIQWPTGITID-------YP 126 (713)
Q Consensus 91 ~~~~~~I~~~~~d------------G~---------~~~~---------------l~-~~~~~~p~glavd-------~~ 126 (713)
.... ...++..- +. .... +. ......|.|+++- .-
T Consensus 202 n~~~-~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~ 280 (367)
T TIGR02604 202 NDDP-PLCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEY 280 (367)
T ss_pred cCCC-ceeEEcccccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHH
Confidence 7543 22322210 10 0000 00 0112368999997 34
Q ss_pred CCeEEEEcCCCCcEEEEeCC--CCce----eEEEecCCCCccceeeeee-CCeEEEEeCCCC
Q psy6570 127 SQRLYWADPKARTIESINLN--GKDR----FVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTN 181 (713)
Q Consensus 127 ~~~LY~~d~~~~~I~~~~~~--g~~~----~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~ 181 (713)
.+.||++++..++|+++.++ |... ..++.....+..|..|.+. ++.||++||...
T Consensus 281 ~g~~fv~~~~~~~v~~~~l~~~g~~~~~~~~~~l~~~~~~~rp~dv~~~pDG~Lyv~d~~~~ 342 (367)
T TIGR02604 281 RGLLLVGDAHGQLIVRYSLEPKGAGFKGERPEFLRSNDTWFRPVNVTVGPDGALYVSDWYDR 342 (367)
T ss_pred CCCEEeeeccCCEEEEEEeecCCCccEeecCceEecCCCcccccceeECCCCCEEEEEeccC
Confidence 57899999999999999875 4322 2233322234578888876 678999997553
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.6e-06 Score=87.06 Aligned_cols=196 Identities=13% Similarity=0.076 Sum_probs=124.5
Q ss_pred cCCceeEEEccCcccEE-ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCC
Q psy6570 5 SSGNVTRVKREMNLKTV-LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLS 83 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~~~-~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~ 83 (713)
..+.|..+++.+...+. +.....|.++++++.+..|+++.. ....+..++++.......+.. ...|..+++++..
T Consensus 93 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~---~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg 168 (300)
T TIGR03866 93 DDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSE---TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADG 168 (300)
T ss_pred CCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEec---CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCC
Confidence 35667777776543222 233346899999987777766654 334566667665433222222 2568899999877
Q ss_pred CcEEEEccCCCCeEEEEecCCCCcEEEEe-------CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEec
Q psy6570 84 GRMFWTELGIKPRISGASIDGKNKFNLVD-------NNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHT 156 (713)
Q Consensus 84 ~~ly~td~~~~~~I~~~~~dG~~~~~l~~-------~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~ 156 (713)
.+||++..... .|...++........+. .....|.++++++..+.+|++....++|..+++...........
T Consensus 169 ~~l~~~~~~~~-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 247 (300)
T TIGR03866 169 KELWVSSEIGG-TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV 247 (300)
T ss_pred CEEEEEcCCCC-EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe
Confidence 77777654333 78888876543222111 01235788999998889999887778899888865433222222
Q ss_pred CCCCccceeeee--eCCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEE
Q psy6570 157 EDNGYKPYKLEV--FEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLI 209 (713)
Q Consensus 157 ~~~~~~p~~i~~--~~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v 209 (713)
...+..+++ ++.+||.+....+.|..++..++..+..+..+ ..|.+|++
T Consensus 248 ---~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~ 298 (300)
T TIGR03866 248 ---GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVV 298 (300)
T ss_pred ---CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEe
Confidence 224555555 46678888777788999998877766666554 66777765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-06 Score=85.76 Aligned_cols=184 Identities=16% Similarity=0.182 Sum_probs=108.0
Q ss_pred CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecC
Q psy6570 24 NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASID 103 (713)
Q Consensus 24 ~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~d 103 (713)
...++.||++++.+++||.+.. ....|+.++++|+..+.+--.+...+.+|++- .++.+.+++...+ +|.++..+
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d---~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~-~L~~~~~~ 94 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQD---EPGEIYELSLDGKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQ-RLYIFTID 94 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEET---TTTEEEEEETT--EEEEEE-SS-SSEEEEEE--STTEEEEEETTTT-EEEEEEE-
T ss_pred ccCCccccEEcCCCCeEEEEEC---CCCEEEEEcCCCCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCC-cEEEEEEe
Confidence 3446999999999999987766 57889999999988877766778889999996 4555555564444 78887774
Q ss_pred C--CCcEE--E--EeCC-----CCCCeeEEEeCCCCeEEEEcCCC-CcEEEEeC--CCCceeEEEe-----cCCCCccce
Q psy6570 104 G--KNKFN--L--VDNN-----IQWPTGITIDYPSQRLYWADPKA-RTIESINL--NGKDRFVVYH-----TEDNGYKPY 164 (713)
Q Consensus 104 G--~~~~~--l--~~~~-----~~~p~glavd~~~~~LY~~d~~~-~~I~~~~~--~g~~~~~~~~-----~~~~~~~p~ 164 (713)
. +.... + +... -...-|||+|+.+++||++.... .+|+.++. .+....+... ....+..+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 3 22111 1 1111 12247999999999999996444 36788776 3333222221 112356778
Q ss_pred eeeee--CCeEEEEeCCCCcEEEEcccCCCcceeee--c-------cccccccEEEEeec
Q psy6570 165 KLEVF--EDNLYFSTYRTNNILKINKFGNSDFNVLA--N-------NLNRASDVLILQEN 213 (713)
Q Consensus 165 ~i~~~--~~~ly~td~~~~~i~~~~~~~~~~~~~~~--~-------~~~~~~~i~v~~~~ 213 (713)
+|+++ .++||+....+.+|..++..|. .+..+. . .+..|++|++....
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d~~G~-~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G 233 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELDRQGR-VVSSLSLDRGFHGLSKDIPQPEGIAFDPDG 233 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred ceEEcCCCCeEEEEECCCCeEEEECCCCC-EEEEEEeCCcccCcccccCCccEEEECCCC
Confidence 88887 5689999999999999996544 333222 1 24668888876543
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1836|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.5e-07 Score=110.48 Aligned_cols=243 Identities=30% Similarity=0.788 Sum_probs=130.7
Q ss_pred eeCCCCcccCCCCccC-------------CC---CCCCCC-CEEEcCCCeeeCCCCCccCCCC----------------c
Q psy6570 371 CHCAPSYTGARCESRI-------------CE---NKCHNG-GTCIATTQTCVCPPGFTGDTCQ----------------Q 417 (713)
Q Consensus 371 C~C~~G~~g~~C~~~~-------------C~---~~C~~~-~~C~~~~~~C~C~~g~~g~~C~----------------~ 417 (713)
|.|++||+|..|+... |. -.|..+ ..|...++.|.|.+--.|..|+ .
T Consensus 697 c~C~~g~tG~~Ce~C~~gfrr~~~~~~~~~~c~~C~cngh~~~Cd~~tG~C~C~~~t~G~~C~~C~~GfYg~~~~~~~~d 776 (1705)
T KOG1836|consen 697 CTCPVGYTGQFCESCAPGFRRLSPQLGPFCPCIPCDCNGHSNICDPRTGQCKCKHNTFGGQCAQCVDGFYGLPDLGTSGD 776 (1705)
T ss_pred ccCCCCcccchhhhcchhhhcccccCCCCCcccccccCCccccccCCCCceecccCCCCCchhhhcCCCCCccccCCCCC
Confidence 7778888777776320 11 112222 3455455555544444444433 2
Q ss_pred CCCCCCCCCcEeccCC--CCcccc-CCCCCcCCCCccCCCCCC------CCC---CeeecCCCCCeecCCCCccC---CC
Q psy6570 418 CLNLKCQNGGVCVNKT--TGLECD-CPKFYYGKNCQYSQCKNY------CVN---GECSITDSGPKCMCSPGYSG---KK 482 (713)
Q Consensus 418 C~~~~C~~~~~C~~~~--~~~~C~-C~~G~~g~~C~~~~C~~~------~~~---~~C~~~~~~~~C~C~~G~~g---~~ 482 (713)
|.+.+|.+.+.|..+. ....|. |++||+|..|+. |... -.+ ..|. .|.|....-- ..
T Consensus 777 C~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~--c~dgyfg~p~~~~~~~~~c~------~c~c~~n~dp~~~g~ 848 (1705)
T KOG1836|consen 777 CQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEE--CADGYFGNPLGHDGDVRPCQ------SCQCNFNVDPNAFGN 848 (1705)
T ss_pred CccCCCCCChhhcCcCcccceecCCCCCCCccccccc--CCCccccCCCCCCCCcccCc------cceeccccCcccccc
Confidence 6666788888887654 346788 999999998862 2221 001 0111 2222221110 01
Q ss_pred CCC-----ccccCCCCCCcc-cCCCCccCCC--------CCCCCCCCCc------EEcCCCCCeeccCCCCCCCCCCccc
Q psy6570 483 CDT-----CTCLNGDSGPKC-MCSPGYSGKK--------CDTCTCLNGG------TCIPNSKNNVCKCPSQYTGRRCECA 542 (713)
Q Consensus 483 C~~-----~~C~~~~~~~~C-~C~~G~~g~~--------C~~~~C~~~g------~C~~~~~~~~C~C~~g~~G~~C~~~ 542 (713)
|+. -.|.....+..| .|.+||.|+. |..+-|...+ .|.+. +++|.|.+.-.|..|...
T Consensus 849 c~~~tg~c~~ci~nT~g~~cd~c~~g~~gd~l~~~p~~~c~~c~c~p~gs~~~~~~c~~~--tGQcec~~~v~g~~c~~c 926 (1705)
T KOG1836|consen 849 CNRLTGECLKCIHNTAGEYCDLCKEGYFGDPLAPNPEDKCFACGCVPAGSELPSLTCNPV--TGQCECKPNVEGRDCLYC 926 (1705)
T ss_pred ccccccceeeccCCcccccccccccCccccccCCCcCCccccccCccCCcccccccCCCc--ccceeccCCCCccccccc
Confidence 110 023333334444 5889998853 4444443322 24332 678999998888887532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCc----EEeecCCCceeeCCCCCcCCCCCcCCCC------CCC-CCCCCCCC----eEec
Q psy6570 543 VGDTSCASLANKCTPNYCSNNG----TCVLIEGKPSCKCLPPYSGKQCTEREDS------PSC-HNYCDNAG----LCSY 607 (713)
Q Consensus 543 ~~~~~c~~~~~~C~~~~C~~~~----~C~~~~g~~~C~C~~G~~G~~C~~~~~~------~~C-~~~C~~~g----~C~~ 607 (713)
.....-......|.+..|+..| .|.. ++.+|.|.+|.+|..|.....- ..| .-.|...| +|..
T Consensus 927 ~~g~fnl~s~~gC~~c~c~~~gs~~~~c~~--~tGqc~c~~gVtgqrc~qc~~~~~~~~~~gc~~c~c~~~Gs~~~qc~~ 1004 (1705)
T KOG1836|consen 927 FKGFFNLNSGVGCEPCNCDPTGSESSDCDV--GTGQCYCRPGVTGQRCDQCETYHFGFQTEGCGLCECDPLGSRGFQCDP 1004 (1705)
T ss_pred cccccccCCCCCcccccccccccccccccc--cCCceeeecCccccccCccccCcccccccCCcceecccCCcccceecc
Confidence 1111111123456666676554 5664 4457999999999998764211 112 12244444 4643
Q ss_pred CCCCcceeecCCCcccCCCCc
Q psy6570 608 SKQGKPVCTCVNGWSGITCSE 628 (713)
Q Consensus 608 ~~~g~~~C~C~~G~~G~~C~~ 628 (713)
. ..+|.|++|+.|..|..
T Consensus 1005 ~---~G~c~c~~~~~g~~c~~ 1022 (1705)
T KOG1836|consen 1005 E---DGQCPCRPGFEGRRCDQ 1022 (1705)
T ss_pred c---CCeeeecCCCCCccccc
Confidence 2 35799999999877653
|
|
| >KOG1836|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.9e-07 Score=110.07 Aligned_cols=273 Identities=27% Similarity=0.609 Sum_probs=152.8
Q ss_pred cccCCCCCCCccc-cCCCCccCCCC------CCCC-----CCCCCC--C--eeecCCCCCCee-ecCCCcccCCcc--cc
Q psy6570 285 CLCPDHLTEELNV-TSGKMSCKVAP------ARTC-----YLDCNH--G--TCEFDDDFDPHC-ICQENFYGTYCE--KV 345 (713)
Q Consensus 285 c~C~~~~~~~~c~-C~~g~~~~~~~------~~~C-----~~~C~~--~--~C~~~~~~~~~C-~C~~g~~G~~C~--~~ 345 (713)
|.|+.++.+..|. |.+||+...-. --.| .+.|.. | .|+....+ ..| +|..||+|..=. ..
T Consensus 697 c~C~~g~tG~~Ce~C~~gfrr~~~~~~~~~~c~~C~cngh~~~Cd~~tG~C~C~~~t~G-~~C~~C~~GfYg~~~~~~~~ 775 (1705)
T KOG1836|consen 697 CTCPVGYTGQFCESCAPGFRRLSPQLGPFCPCIPCDCNGHSNICDPRTGQCKCKHNTFG-GQCAQCVDGFYGLPDLGTSG 775 (1705)
T ss_pred ccCCCCcccchhhhcchhhhcccccCCCCCcccccccCCccccccCCCCceecccCCCC-CchhhhcCCCCCccccCCCC
Confidence 7888888777776 88887643211 1111 123332 2 23322222 344 677777765322 12
Q ss_pred CCCCCCCCCCceeeCCCCCCCCCceee-CCCCcccCCCCccC--CC-CCCCCC---CEEEcCCCeeeCCCCCccCCCCcC
Q psy6570 346 NNSMCPCLNQGMCYPDLTHPEPTYKCH-CAPSYTGARCESRI--CE-NKCHNG---GTCIATTQTCVCPPGFTGDTCQQC 418 (713)
Q Consensus 346 ~c~~~~C~~~~~C~~~~~~~~~~~~C~-C~~G~~g~~C~~~~--C~-~~C~~~---~~C~~~~~~C~C~~g~~g~~C~~C 418 (713)
+|..++|.+++.|..... .....|. |++||+|.+|+... .. ++=.++ ..| -.|.|.....-.
T Consensus 776 dC~~C~Cp~~~~~~~~~~--~~~~iCk~Cp~gytG~rCe~c~dgyfg~p~~~~~~~~~c----~~c~c~~n~dp~----- 844 (1705)
T KOG1836|consen 776 DCQPCPCPNGGACGQTPE--ILEVVCKNCPPGYTGLRCEECADGYFGNPLGHDGDVRPC----QSCQCNFNVDPN----- 844 (1705)
T ss_pred CCccCCCCCChhhcCcCc--ccceecCCCCCCCcccccccCCCccccCCCCCCCCcccC----ccceeccccCcc-----
Confidence 388899999998877643 3367898 99999999997521 00 010010 011 012222111000
Q ss_pred CCCCCCCC-c---EeccCCCCccc-cCCCCCcCCC--------CccCCCCCC---CCCCeeecCCCCCeecCCCCccCCC
Q psy6570 419 LNLKCQNG-G---VCVNKTTGLEC-DCPKFYYGKN--------CQYSQCKNY---CVNGECSITDSGPKCMCSPGYSGKK 482 (713)
Q Consensus 419 ~~~~C~~~-~---~C~~~~~~~~C-~C~~G~~g~~--------C~~~~C~~~---~~~~~C~~~~~~~~C~C~~G~~g~~ 482 (713)
....|... + .|+....+..| .|.+||+|.. |....|... .....|....| +|.|.+.-.|..
T Consensus 845 ~~g~c~~~tg~c~~ci~nT~g~~cd~c~~g~~gd~l~~~p~~~c~~c~c~p~gs~~~~~~c~~~tG--Qcec~~~v~g~~ 922 (1705)
T KOG1836|consen 845 AFGNCNRLTGECLKCIHNTAGEYCDLCKEGYFGDPLAPNPEDKCFACGCVPAGSELPSLTCNPVTG--QCECKPNVEGRD 922 (1705)
T ss_pred ccccccccccceeeccCCcccccccccccCccccccCCCcCCccccccCccCCcccccccCCCccc--ceeccCCCCccc
Confidence 00122221 2 23444445566 4888888753 322222221 11233555554 889999988888
Q ss_pred CCCccccCCCCCCcccCCCCccC----CCCCCCCCCCCc----EEcCCCCCeeccCCCCCCCCCCcccCCCCCCCCCCCC
Q psy6570 483 CDTCTCLNGDSGPKCMCSPGYSG----KKCDTCTCLNGG----TCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANK 554 (713)
Q Consensus 483 C~~~~C~~~~~~~~C~C~~G~~g----~~C~~~~C~~~g----~C~~~~~~~~C~C~~g~~G~~C~~~~~~~~c~~~~~~ 554 (713)
|.. |.+||++ ..|.++.|..-| .|.. ++++|.|.+|.+|.+|........-.. ...
T Consensus 923 c~~-------------c~~g~fnl~s~~gC~~c~c~~~gs~~~~c~~--~tGqc~c~~gVtgqrc~qc~~~~~~~~-~~g 986 (1705)
T KOG1836|consen 923 CLY-------------CFKGFFNLNSGVGCEPCNCDPTGSESSDCDV--GTGQCYCRPGVTGQRCDQCETYHFGFQ-TEG 986 (1705)
T ss_pred ccc-------------ccccccccCCCCCcccccccccccccccccc--cCCceeeecCccccccCccccCccccc-ccC
Confidence 875 6777774 457777776543 4543 477999999999999873321111111 234
Q ss_pred CCCCCCCCCc----EEeecCCCceeeCCCCCcCCCCCcC
Q psy6570 555 CTPNYCSNNG----TCVLIEGKPSCKCLPPYSGKQCTER 589 (713)
Q Consensus 555 C~~~~C~~~~----~C~~~~g~~~C~C~~G~~G~~C~~~ 589 (713)
|....|...| +|....| +|.|++++.|..|...
T Consensus 987 c~~c~c~~~Gs~~~qc~~~~G--~c~c~~~~~g~~c~~c 1023 (1705)
T KOG1836|consen 987 CGLCECDPLGSRGFQCDPEDG--QCPCRPGFEGRRCDQC 1023 (1705)
T ss_pred CcceecccCCcccceecccCC--eeeecCCCCCcccccc
Confidence 5455566666 6876554 7999999999887654
|
|
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.7e-08 Score=66.13 Aligned_cols=41 Identities=34% Similarity=0.656 Sum_probs=38.3
Q ss_pred CeEEEeecCCCCCC-eEEEEecCCceEEEEEcCCCCCcceEEEcC
Q psy6570 38 KNLYWTDAGGRSSN-NIMVSTLEGRKKRTLLNTGLNEPYDIALEP 81 (713)
Q Consensus 38 ~~ly~td~~~~~~~-~I~~~~~~G~~~~~l~~~~~~~p~~iavD~ 81 (713)
++|||+|. ..+ .|.+.+++|+.+++++...+..|.+|||||
T Consensus 1 ~~iYWtD~---~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDW---SQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEET---TTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEEC---CCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 58999999 677 999999999999999999999999999996
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.5e-07 Score=92.45 Aligned_cols=148 Identities=19% Similarity=0.219 Sum_probs=100.3
Q ss_pred CCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEc------CCCCCcceEEEcC---CCCcEEEEccCC--
Q psy6570 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLN------TGLNEPYDIALEP---LSGRMFWTELGI-- 93 (713)
Q Consensus 25 ~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~------~~~~~p~~iavD~---~~~~ly~td~~~-- 93 (713)
|++|.+|++.+. ++||+++. .++|.+++.+|.....+.. .+.....+||++| .+++||++-...
T Consensus 1 L~~P~~~a~~pd-G~l~v~e~----~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~ 75 (331)
T PF07995_consen 1 LNNPRSMAFLPD-GRLLVAER----SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADE 75 (331)
T ss_dssp ESSEEEEEEETT-SCEEEEET----TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-T
T ss_pred CCCceEEEEeCC-CcEEEEeC----CceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccC
Confidence 578999999987 79999986 7899999988876233222 2245678999998 468888876521
Q ss_pred -----CCeEEEEecCCC-----CcEEEEe------CCCCCCeeEEEeCCCCeEEEEc-------------CCCCcEEEEe
Q psy6570 94 -----KPRISGASIDGK-----NKFNLVD------NNIQWPTGITIDYPSQRLYWAD-------------PKARTIESIN 144 (713)
Q Consensus 94 -----~~~I~~~~~dG~-----~~~~l~~------~~~~~p~glavd~~~~~LY~~d-------------~~~~~I~~~~ 144 (713)
..+|.|..++.. ..++|+. ...+....|+|++ .++|||+- ...++|.|++
T Consensus 76 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~ 154 (331)
T PF07995_consen 76 DGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRID 154 (331)
T ss_dssp SSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEE
T ss_pred CCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEec
Confidence 137888877654 2333432 2345667899997 45999983 2346799999
Q ss_pred CCCC-------------ceeEEEecCCCCccceeeeeeC--CeEEEEeCCCC
Q psy6570 145 LNGK-------------DRFVVYHTEDNGYKPYKLEVFE--DNLYFSTYRTN 181 (713)
Q Consensus 145 ~~g~-------------~~~~~~~~~~~~~~p~~i~~~~--~~ly~td~~~~ 181 (713)
.+|+ ..+++... +++|.+++++. +.||.+|.+..
T Consensus 155 ~dG~~p~dnP~~~~~~~~~~i~A~G---lRN~~~~~~d~~tg~l~~~d~G~~ 203 (331)
T PF07995_consen 155 PDGSIPADNPFVGDDGADSEIYAYG---LRNPFGLAFDPNTGRLWAADNGPD 203 (331)
T ss_dssp TTSSB-TTSTTTTSTTSTTTEEEE-----SEEEEEEEETTTTEEEEEEE-SS
T ss_pred ccCcCCCCCccccCCCceEEEEEeC---CCccccEEEECCCCcEEEEccCCC
Confidence 9987 44555544 88999999984 68999886543
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.2e-07 Score=75.24 Aligned_cols=73 Identities=18% Similarity=0.288 Sum_probs=57.7
Q ss_pred ceEEEcCCCCcEEEEccCC----------------CCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCC
Q psy6570 75 YDIALEPLSGRMFWTELGI----------------KPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKAR 138 (713)
Q Consensus 75 ~~iavD~~~~~ly~td~~~----------------~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~ 138 (713)
++|+|++.+|.|||||+.. .+||++.++..+..++|+. ++..|+||++++++..|++++....
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~-~L~fpNGVals~d~~~vlv~Et~~~ 79 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD-GLYFPNGVALSPDESFVLVAETGRY 79 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE-EESSEEEEEE-TTSSEEEEEEGGGT
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh-CCCccCeEEEcCCCCEEEEEeccCc
Confidence 4789998779999998643 2689999998876666665 7999999999999999999999999
Q ss_pred cEEEEeCCCC
Q psy6570 139 TIESINLNGK 148 (713)
Q Consensus 139 ~I~~~~~~g~ 148 (713)
||.++.+.|.
T Consensus 80 Ri~rywl~Gp 89 (89)
T PF03088_consen 80 RILRYWLKGP 89 (89)
T ss_dssp EEEEEESSST
T ss_pred eEEEEEEeCC
Confidence 9999998873
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-05 Score=82.27 Aligned_cols=182 Identities=14% Similarity=0.115 Sum_probs=117.0
Q ss_pred CcccCCceeEEEccCccc-EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEc
Q psy6570 2 ASISSGNVTRVKREMNLK-TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~~-~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD 80 (713)
+...++.|..+++.+... ..+.....|.++++++.++.||++.. ..+.|.+.++++......+.. ...|..++++
T Consensus 6 s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~ 81 (300)
T TIGR03866 6 SNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCAS---DSDTIQVIDLATGEVIGTLPS-GPDPELFALH 81 (300)
T ss_pred EecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEEC---CCCeEEEEECCCCcEEEeccC-CCCccEEEEC
Confidence 445678899999876432 23444566899999988888998876 578899999875443322322 2457889999
Q ss_pred CCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCC
Q psy6570 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNG 160 (713)
Q Consensus 81 ~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 160 (713)
+..+.||++..... .|...++........+. ....|.++++++.+..|+++......+..++............ .
T Consensus 82 ~~g~~l~~~~~~~~-~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~---~ 156 (300)
T TIGR03866 82 PNGKILYIANEDDN-LVTVIDIETRKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV---D 156 (300)
T ss_pred CCCCEEEEEcCCCC-eEEEEECCCCeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc---C
Confidence 88888888865444 78888887543222222 1235789999988878777766555566667654332221111 1
Q ss_pred ccceeeee--eCCeEEEEeCCCCcEEEEcccCCC
Q psy6570 161 YKPYKLEV--FEDNLYFSTYRTNNILKINKFGNS 192 (713)
Q Consensus 161 ~~p~~i~~--~~~~ly~td~~~~~i~~~~~~~~~ 192 (713)
..|..+++ ++.+||++....+.|..++...+.
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~ 190 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK 190 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce
Confidence 23444444 455676665556778777765443
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.5e-06 Score=78.09 Aligned_cols=129 Identities=15% Similarity=0.243 Sum_probs=86.6
Q ss_pred CCcceEEEcCCCCcEEEEccCC--------CCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEE
Q psy6570 72 NEPYDIALEPLSGRMFWTELGI--------KPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESI 143 (713)
Q Consensus 72 ~~p~~iavD~~~~~ly~td~~~--------~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~ 143 (713)
++-++--|||. |+.|.--+.. .+.+++--+++ ....+. ..+.-|+||++|.+.+..|++|+.+..|..+
T Consensus 109 nR~NDgkvdP~-Gryy~GtMad~~~~le~~~g~Ly~~~~~h-~v~~i~-~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 109 NRLNDGKVDPD-GRYYGGTMADFGDDLEPIGGELYSWLAGH-QVELIW-NCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred cccccCccCCC-CceeeeeeccccccccccccEEEEeccCC-Cceeee-hhccCCccccccccCcEEEEEccCceEEeee
Confidence 45566778875 4446532111 12333333333 333333 4677899999999999999999999999766
Q ss_pred eCC--C---CceeEEEecCC----CCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceeeeccccc
Q psy6570 144 NLN--G---KDRFVVYHTED----NGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLANNLNR 203 (713)
Q Consensus 144 ~~~--g---~~~~~~~~~~~----~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~ 203 (713)
++| + +++++++.... ....|.|++++ +++||++.+..++|+++++..+.....+.....+
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~q 255 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQ 255 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCc
Confidence 643 2 45666654322 23467888887 7899999999999999999888776655544333
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.3e-06 Score=78.58 Aligned_cols=207 Identities=12% Similarity=0.062 Sum_probs=135.4
Q ss_pred CCcccCCceeEEEccCcc-cEE-ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcC---CCCCcc
Q psy6570 1 MASISSGNVTRVKREMNL-KTV-LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNT---GLNEPY 75 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~~-~~~-~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~---~~~~p~ 75 (713)
|+++..+.|-++++.+.+ +++ +..-..|++|.+++. +..+++|. .. .|.|++.+....+.+-.. .-..-+
T Consensus 77 ft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpd-g~~Witd~---~~-aI~R~dpkt~evt~f~lp~~~a~~nle 151 (353)
T COG4257 77 FTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPD-GSAWITDT---GL-AIGRLDPKTLEVTRFPLPLEHADANLE 151 (353)
T ss_pred EecCccccceecCCCCCceEEEecCCCCCCceEEECCC-CCeeEecC---cc-eeEEecCcccceEEeecccccCCCccc
Confidence 355667888888887644 444 667888999999986 77888998 33 899988765444433211 122344
Q ss_pred eEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEe
Q psy6570 76 DIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYH 155 (713)
Q Consensus 76 ~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~ 155 (713)
..++|+ .|+|+||.... .--|.+......+++-...-..|+||.+.+ ++.||++....+.|.++|......+++..
T Consensus 152 t~vfD~-~G~lWFt~q~G--~yGrLdPa~~~i~vfpaPqG~gpyGi~atp-dGsvwyaslagnaiaridp~~~~aev~p~ 227 (353)
T COG4257 152 TAVFDP-WGNLWFTGQIG--AYGRLDPARNVISVFPAPQGGGPYGICATP-DGSVWYASLAGNAIARIDPFAGHAEVVPQ 227 (353)
T ss_pred ceeeCC-CccEEEeeccc--cceecCcccCceeeeccCCCCCCcceEECC-CCcEEEEeccccceEEcccccCCcceecC
Confidence 578995 78888887531 222444444444444444556799999995 68999999988999999975545555443
Q ss_pred cCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCccee-eeccccccccEEEEeecccc
Q psy6570 156 TEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNV-LANNLNRASDVLILQENKQA 216 (713)
Q Consensus 156 ~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~i~v~~~~~q~ 216 (713)
..........|..+ .+++++++|.++.+.++++....=.+. |.....++.++.|..+-+.+
T Consensus 228 P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW 290 (353)
T COG4257 228 PNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVW 290 (353)
T ss_pred CCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEE
Confidence 22111222445555 578999999999999999865542222 23334556677666655544
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.5e-05 Score=76.98 Aligned_cols=156 Identities=16% Similarity=0.188 Sum_probs=108.4
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEc---CCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCC
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLN---TGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDG 104 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~---~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG 104 (713)
++..-++|.++.|++.|- +.++|..++++-........ ..-..|+-|++.|..+..|+...-++ .|.+...+.
T Consensus 147 ~H~a~~tP~~~~l~v~DL---G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~s-tV~v~~y~~ 222 (346)
T COG2706 147 VHSANFTPDGRYLVVPDL---GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNS-TVDVLEYNP 222 (346)
T ss_pred cceeeeCCCCCEEEEeec---CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCC-EEEEEEEcC
Confidence 677889999999999999 78999998886332221111 23467999999999889999886655 888888876
Q ss_pred C-CcEEEEe---------CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeC--CCCceeEEEecCCCCccceeeee--eC
Q psy6570 105 K-NKFNLVD---------NNIQWPTGITIDYPSQRLYWADPKARTIESINL--NGKDRFVVYHTEDNGYKPYKLEV--FE 170 (713)
Q Consensus 105 ~-~~~~l~~---------~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~--~g~~~~~~~~~~~~~~~p~~i~~--~~ 170 (713)
. .+...+. .+-.+...|.|++++..||+++.+.+.|..+.+ ++.....+.........|..+++ .+
T Consensus 223 ~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g 302 (346)
T COG2706 223 AVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG 302 (346)
T ss_pred CCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC
Confidence 4 2211111 234466789999999999999998888776665 45555555444443445655555 47
Q ss_pred CeEEEEeCCCCcEEEEc
Q psy6570 171 DNLYFSTYRTNNILKIN 187 (713)
Q Consensus 171 ~~ly~td~~~~~i~~~~ 187 (713)
+.|+++...++.|.++.
T Consensus 303 ~~Liaa~q~sd~i~vf~ 319 (346)
T COG2706 303 RFLIAANQKSDNITVFE 319 (346)
T ss_pred CEEEEEccCCCcEEEEE
Confidence 78888876666654443
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=98.51 E-value=1e-05 Score=86.40 Aligned_cols=156 Identities=17% Similarity=0.209 Sum_probs=105.5
Q ss_pred ccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEE------c-CCCCCcceEEEcCC------CC
Q psy6570 18 LKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLL------N-TGLNEPYDIALEPL------SG 84 (713)
Q Consensus 18 ~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~------~-~~~~~p~~iavD~~------~~ 84 (713)
.++++++|..|++|++.+. ++||+++. ..++|.+++.++...+.+. . .+...+.+||++|. ++
T Consensus 22 ~~~va~GL~~Pw~maflPD-G~llVtER---~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~ 97 (454)
T TIGR03606 22 KKVLLSGLNKPWALLWGPD-NQLWVTER---ATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNP 97 (454)
T ss_pred EEEEECCCCCceEEEEcCC-CeEEEEEe---cCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCc
Confidence 4567889999999999975 68999996 4689999887654433221 1 13456789999964 46
Q ss_pred cEEEEccC--------CCCeEEEEecCCC-----CcEEEEeC----CCCCCeeEEEeCCCCeEEEEc--C----------
Q psy6570 85 RMFWTELG--------IKPRISGASIDGK-----NKFNLVDN----NIQWPTGITIDYPSQRLYWAD--P---------- 135 (713)
Q Consensus 85 ~ly~td~~--------~~~~I~~~~~dG~-----~~~~l~~~----~~~~p~glavd~~~~~LY~~d--~---------- 135 (713)
+||++-.. ...+|.|+.++.. ..++|+.. ..+.-..|+|+++ ++||++- .
T Consensus 98 ~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPD-G~LYVs~GD~g~~~~~n~~~ 176 (454)
T TIGR03606 98 YVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPD-GKIYYTIGEQGRNQGANFFL 176 (454)
T ss_pred EEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCC-CcEEEEECCCCCCCcccccC
Confidence 79987311 1238999887632 23444431 2345668999964 6899973 2
Q ss_pred --------------------CCCcEEEEeCCCCc----------eeEEEecCCCCccceeeeee-CCeEEEEeCCC
Q psy6570 136 --------------------KARTIESINLNGKD----------RFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRT 180 (713)
Q Consensus 136 --------------------~~~~I~~~~~~g~~----------~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~ 180 (713)
..++|.|++.||+- +..+... .+++|.+|+++ .+.||.++.+.
T Consensus 177 ~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~--G~RNp~Gla~dp~G~Lw~~e~Gp 250 (454)
T TIGR03606 177 PNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTY--GHRNPQGLAFTPDGTLYASEQGP 250 (454)
T ss_pred cchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEE--eccccceeEECCCCCEEEEecCC
Confidence 12379999999962 1123332 47899999987 67899988764
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG4260|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.9e-08 Score=90.04 Aligned_cols=149 Identities=24% Similarity=0.555 Sum_probs=93.6
Q ss_pred CCCCccCCCCCC------CCCCCCcEEcCC---CCCeeccCCCCCCCCCCcccCCCC-CCCCC--CCCCCCC--CCCCCc
Q psy6570 499 CSPGYSGKKCDT------CTCLNGGTCIPN---SKNNVCKCPSQYTGRRCECAVGDT-SCASL--ANKCTPN--YCSNNG 564 (713)
Q Consensus 499 C~~G~~g~~C~~------~~C~~~g~C~~~---~~~~~C~C~~g~~G~~C~~~~~~~-~c~~~--~~~C~~~--~C~~~~ 564 (713)
|++|.+|..|.. .+|..+|.|.-. .|++.|.|..||.|+.|..-...+ .-... .--|... .| .+
T Consensus 132 Cp~gtyGpdCl~Cpggser~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~~C--~~ 209 (350)
T KOG4260|consen 132 CPDGTYGPDCLQCPGGSERPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHEGC--LG 209 (350)
T ss_pred cCCCCcCCccccCCCCCcCCcCCCCcccCCCCCCCCCcccccCCCCCccccccchHHHHhhcccccchhhhhhhhh--hc
Confidence 445555554432 368888888643 358899999999999986321100 00000 0012111 12 12
Q ss_pred EEeecCCCcee-eCCCCCcC--CCCCcCCCCCCC---CCCCCCCCeEecCCCCcceeecCCCcccCCCCcCCCCC---CC
Q psy6570 565 TCVLIEGKPSC-KCLPPYSG--KQCTEREDSPSC---HNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCA---HF 635 (713)
Q Consensus 565 ~C~~~~g~~~C-~C~~G~~G--~~C~~~~~~~~C---~~~C~~~g~C~~~~~g~~~C~C~~G~~G~~C~~~~~C~---~~ 635 (713)
.|.... +-.| .|..||.- ..|.++ ++| +.+|..+..|+|+. |+|.|.+++||.+. .++|. ..
T Consensus 210 ~Csg~~-~k~C~kCkkGW~lde~gCvDv---nEC~~ep~~c~~~qfCvNte-GSf~C~dk~Gy~~g----~d~C~~~~d~ 280 (350)
T KOG4260|consen 210 VCSGES-SKGCSKCKKGWKLDEEGCVDV---NECQNEPAPCKAHQFCVNTE-GSFKCEDKEGYKKG----VDECQFCADV 280 (350)
T ss_pred ccCCCC-CCChhhhcccceecccccccH---HHHhcCCCCCChhheeecCC-CceEecccccccCC----hHHhhhhhhh
Confidence 444322 2345 69999974 358776 888 67899999999987 99999999999873 34442 33
Q ss_pred C-CCCCeecCCCCccCCCCCceeeCCCCcc
Q psy6570 636 C-FNGGTCREQNYSLDPDLKPICICPRGYA 664 (713)
Q Consensus 636 C-~~~~~C~~~~~~~~~~~~~~C~C~~Gy~ 664 (713)
| ..+..|.+ .++.++|+|..|+.
T Consensus 281 ~~~kn~~c~n------i~~~~r~v~f~~~~ 304 (350)
T KOG4260|consen 281 CASKNRPCMN------IDGQYRCVCFSGLI 304 (350)
T ss_pred cccCCCCccc------CCccEEEEecccce
Confidence 4 23455654 66779999999874
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.9e-05 Score=75.76 Aligned_cols=187 Identities=13% Similarity=0.100 Sum_probs=120.2
Q ss_pred CcccCCceeEEEccCcc-cEE-e---cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcce
Q psy6570 2 ASISSGNVTRVKREMNL-KTV-L---SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYD 76 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~-~~~-~---~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ 76 (713)
+|... .|.|++.++.+ +.. + ....+-+...||. .++|+++.. .+.--+.+.-....++.-...-..|.|
T Consensus 120 td~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~-~G~lWFt~q----~G~yGrLdPa~~~i~vfpaPqG~gpyG 193 (353)
T COG4257 120 TDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDP-WGNLWFTGQ----IGAYGRLDPARNVISVFPAPQGGGPYG 193 (353)
T ss_pred ecCcc-eeEEecCcccceEEeecccccCCCcccceeeCC-CccEEEeec----cccceecCcccCceeeeccCCCCCCcc
Confidence 44444 78888886643 222 1 2233345578995 478888876 233335565555555544344578999
Q ss_pred EEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEe-CC-CCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEE
Q psy6570 77 IALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVD-NN-IQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVY 154 (713)
Q Consensus 77 iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~-~~-~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~ 154 (713)
|.+.| +|.+|++....+ .|-+++.-....+++.. .. -+....|..|+ -++++.+++.+.++++++..-..-....
T Consensus 194 i~atp-dGsvwyaslagn-aiaridp~~~~aev~p~P~~~~~gsRriwsdp-ig~~wittwg~g~l~rfdPs~~sW~eyp 270 (353)
T COG4257 194 ICATP-DGSVWYASLAGN-AIARIDPFAGHAEVVPQPNALKAGSRRIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEYP 270 (353)
T ss_pred eEECC-CCcEEEEecccc-ceEEcccccCCcceecCCCcccccccccccCc-cCcEEEeccCCceeeEeCcccccceeee
Confidence 99996 789999987666 78777654434444432 12 22345567774 6799999999999999998665433222
Q ss_pred ecCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceeeec
Q psy6570 155 HTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLAN 199 (713)
Q Consensus 155 ~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~~ 199 (713)
.. ....+|+++-|+ .++++.+++..+.|.|++.+ .....++..
T Consensus 271 LP-gs~arpys~rVD~~grVW~sea~agai~rfdpe-ta~ftv~p~ 314 (353)
T COG4257 271 LP-GSKARPYSMRVDRHGRVWLSEADAGAIGRFDPE-TARFTVLPI 314 (353)
T ss_pred CC-CCCCCcceeeeccCCcEEeeccccCceeecCcc-cceEEEecC
Confidence 22 235678889988 56777789999999999976 333344433
|
|
| >KOG1520|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.4e-06 Score=83.64 Aligned_cols=116 Identities=14% Similarity=0.123 Sum_probs=84.9
Q ss_pred CCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeC----CCCCCeeEEEeCCCCeEEEEcCC-----------
Q psy6570 72 NEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDN----NIQWPTGITIDYPSQRLYWADPK----------- 136 (713)
Q Consensus 72 ~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~----~~~~p~glavd~~~~~LY~~d~~----------- 136 (713)
.+|.||+++..+|.||++|..-. ++.++..|...+.+... .+...++|.||+ ++.|||+|+.
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlG--L~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a 191 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLG--LLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFA 191 (376)
T ss_pred CCcceEEeccCCCeEEEEeccee--eEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEe
Confidence 78999999999889999997644 89999998876655532 355679999997 9999999853
Q ss_pred ------CCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEeCCCCcEEEEcccCC
Q psy6570 137 ------ARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGN 191 (713)
Q Consensus 137 ------~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~ 191 (713)
++|+.++|...+..+++.... .+++..++..+++.+.+++....+|.++-..+.
T Consensus 192 ~l~g~~~GRl~~YD~~tK~~~VLld~L-~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~ 251 (376)
T KOG1520|consen 192 ALEGDPTGRLFRYDPSTKVTKVLLDGL-YFPNGLALSPDGSFVLVAETTTARIKRYWIKGP 251 (376)
T ss_pred eecCCCccceEEecCcccchhhhhhcc-cccccccCCCCCCEEEEEeeccceeeeeEecCC
Confidence 335555555555555555442 244555555678899999988888888865443
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.3e-05 Score=82.09 Aligned_cols=184 Identities=19% Similarity=0.286 Sum_probs=111.4
Q ss_pred cCCceeEEEccCcc-cEE-------ecCCCCCceEEEec---cCCeEEEeecCC-----CCCCeEEEEecCCc-----eE
Q psy6570 5 SSGNVTRVKREMNL-KTV-------LSNLHDPRGVAVDW---VGKNLYWTDAGG-----RSSNNIMVSTLEGR-----KK 63 (713)
Q Consensus 5 ~~~~I~~~~~~~~~-~~~-------~~~~~~p~gla~D~---~~~~ly~td~~~-----~~~~~I~~~~~~G~-----~~ 63 (713)
..++|++++.++.. ..+ ........|||+++ .++.||++-... ....+|.++.++.. ..
T Consensus 20 ~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~ 99 (331)
T PF07995_consen 20 RSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSE 99 (331)
T ss_dssp TTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEE
T ss_pred CCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccc
Confidence 37888888866654 222 22345578999998 357899877610 11257888877654 23
Q ss_pred EEEEc---C---CCCCcceEEEcCCCCcEEEEccC------------CCCeEEEEecCCCC------------cEEEEeC
Q psy6570 64 RTLLN---T---GLNEPYDIALEPLSGRMFWTELG------------IKPRISGASIDGKN------------KFNLVDN 113 (713)
Q Consensus 64 ~~l~~---~---~~~~p~~iavD~~~~~ly~td~~------------~~~~I~~~~~dG~~------------~~~l~~~ 113 (713)
++|+. . ....-..|+++| +|+|||+--. ..++|.|++.||+. ...++..
T Consensus 100 ~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~ 178 (331)
T PF07995_consen 100 EVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAY 178 (331)
T ss_dssp EEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE
T ss_pred eEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEe
Confidence 33332 1 234456799997 6799998311 13689999999972 2345566
Q ss_pred CCCCCeeEEEeCCCCeEEEEcCCCC---cEEEEeCCCCc--------------e------------eEEEecCCCCccce
Q psy6570 114 NIQWPTGITIDYPSQRLYWADPKAR---TIESINLNGKD--------------R------------FVVYHTEDNGYKPY 164 (713)
Q Consensus 114 ~~~~p~glavd~~~~~LY~~d~~~~---~I~~~~~~g~~--------------~------------~~~~~~~~~~~~p~ 164 (713)
.++.|.+|++|+.+++||.+|.+.. .|.++.. |.+ . ..+.... ....|.
T Consensus 179 GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~-G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~ 256 (331)
T PF07995_consen 179 GLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEP-GGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYP-PHSAPT 256 (331)
T ss_dssp --SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-T-T-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEET-TT--EE
T ss_pred CCCccccEEEECCCCcEEEEccCCCCCcEEEEecc-CCcCCCCCCcCCCCCCCCccccccCCCCcCccceeec-CccccC
Confidence 8999999999998899999995443 3444431 210 0 0011110 124567
Q ss_pred eeeee--------CCeEEEEeCCCCcEEEEcccCC
Q psy6570 165 KLEVF--------EDNLYFSTYRTNNILKINKFGN 191 (713)
Q Consensus 165 ~i~~~--------~~~ly~td~~~~~i~~~~~~~~ 191 (713)
|+.+. .+.++++++..++|+++....+
T Consensus 257 G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~ 291 (331)
T PF07995_consen 257 GIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDED 291 (331)
T ss_dssp EEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETT
T ss_pred ceEEECCccCccccCcEEEecCCCCEEEEEeeecC
Confidence 77766 5679999999999999987644
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.9e-05 Score=77.77 Aligned_cols=183 Identities=16% Similarity=0.204 Sum_probs=109.2
Q ss_pred cCCceeEEEccCcccEE-ecC--------CCCCceEEEeccCCeEEEeecCCCCCCeEEEEecC----------------
Q psy6570 5 SSGNVTRVKREMNLKTV-LSN--------LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE---------------- 59 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~~~-~~~--------~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~---------------- 59 (713)
..+.|..+|+.+.+.+- +.. ...|..+++.+.++.||+++.. ..+.|.++|+.
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~--p~~~V~VvD~~~~kvv~ei~vp~~~~v 152 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS--PSPAVGVVDLEGKAFVRMMDVPDCYHI 152 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC--CCCEEEEEECCCCcEEEEEeCCCCcEE
Confidence 56778888877754332 222 3445599999999999999873 13444444433
Q ss_pred --------------CceEE---------EEEcCC---------CCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCc
Q psy6570 60 --------------GRKKR---------TLLNTG---------LNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNK 107 (713)
Q Consensus 60 --------------G~~~~---------~l~~~~---------~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~ 107 (713)
|+... ...... +.+| ++.+.++.++|.... +.|+.+++.+...
T Consensus 153 y~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id~~~~~~ 227 (352)
T TIGR02658 153 FPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT--GKIFQIDLSSGDA 227 (352)
T ss_pred EEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC--CeEEEEecCCCcc
Confidence 33322 100000 1233 222324555555444 3899998766543
Q ss_pred EEEEe-----CC----CCCCee---EEEeCCCCeEEEEc-C--------CCCcEEEEeCCCCceeEEEecCCCCccceee
Q psy6570 108 FNLVD-----NN----IQWPTG---ITIDYPSQRLYWAD-P--------KARTIESINLNGKDRFVVYHTEDNGYKPYKL 166 (713)
Q Consensus 108 ~~l~~-----~~----~~~p~g---lavd~~~~~LY~~d-~--------~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i 166 (713)
..... .. -..|.| +++++++++||++. . ..++|+.+|.....+...+.. ...|.+|
T Consensus 228 ~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~i 304 (352)
T TIGR02658 228 KFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSI 304 (352)
T ss_pred eecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeE
Confidence 33221 11 225666 99999999999953 2 236899999865544433333 2345555
Q ss_pred ee--eCC-eEEEEeCCCCcEEEEcccCCCcceee
Q psy6570 167 EV--FED-NLYFSTYRTNNILKINKFGNSDFNVL 197 (713)
Q Consensus 167 ~~--~~~-~ly~td~~~~~i~~~~~~~~~~~~~~ 197 (713)
++ ++. .||.++...+.|..++...+..+..+
T Consensus 305 avS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 305 NVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 55 567 89999988999999998766655554
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.9e-05 Score=78.23 Aligned_cols=166 Identities=18% Similarity=0.197 Sum_probs=106.1
Q ss_pred CceeEEEccCccc--EE-e-----cCCCCCceEEEeccC-----CeEEEeecCCCCCCeEEEEecCCce-EEEEEcCC--
Q psy6570 7 GNVTRVKREMNLK--TV-L-----SNLHDPRGVAVDWVG-----KNLYWTDAGGRSSNNIMVSTLEGRK-KRTLLNTG-- 70 (713)
Q Consensus 7 ~~I~~~~~~~~~~--~~-~-----~~~~~p~gla~D~~~-----~~ly~td~~~~~~~~I~~~~~~G~~-~~~l~~~~-- 70 (713)
.+|..+++.+... ++ + ........|+||... ..+|++|. ....|.++++.... .+++...-
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~---~~~glIV~dl~~~~s~Rv~~~~~~~ 110 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDS---GGPGLIVYDLATGKSWRVLHNSFSP 110 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEET---TTCEEEEEETTTTEEEEEETCGCTT
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCC---CcCcEEEEEccCCcEEEEecCCcce
Confidence 5788888887542 11 1 122334669999754 48999999 66789999987544 44442211
Q ss_pred ----------------CCCcceEEEcC---CCCcEEEEccCCCCeEEEEecC----CC---------CcEEEEeCCCCCC
Q psy6570 71 ----------------LNEPYDIALEP---LSGRMFWTELGIKPRISGASID----GK---------NKFNLVDNNIQWP 118 (713)
Q Consensus 71 ----------------~~~p~~iavD~---~~~~ly~td~~~~~~I~~~~~d----G~---------~~~~l~~~~~~~p 118 (713)
.....||++.+ ..+.|||.-.... +++++..+ .+ ..+.+.. .....
T Consensus 111 ~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~-k~~~s 188 (287)
T PF03022_consen 111 DPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGD-KGSQS 188 (287)
T ss_dssp S-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE----SE
T ss_pred eccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccc-cCCCC
Confidence 11244678866 3457999876655 78887543 11 1222322 23456
Q ss_pred eeEEEeCCCCeEEEEcCCCCcEEEEeCCC----CceeEEEecCCCCccceeeeeeC---CeEEEEeC
Q psy6570 119 TGITIDYPSQRLYWADPKARTIESINLNG----KDRFVVYHTEDNGYKPYKLEVFE---DNLYFSTY 178 (713)
Q Consensus 119 ~glavd~~~~~LY~~d~~~~~I~~~~~~g----~~~~~~~~~~~~~~~p~~i~~~~---~~ly~td~ 178 (713)
.|+++|+ ++.||+++...+.|.+.+.++ .+..+++.....+..|.++.++. ++||+...
T Consensus 189 ~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 189 DGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp CEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred ceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 8999995 899999999999999999998 45566666655588999999988 88998763
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00013 Score=75.71 Aligned_cols=202 Identities=14% Similarity=0.189 Sum_probs=120.4
Q ss_pred CceeEEEccCcccE-EecCCCCCceEEEeccCCeEEEeecC------CCCCCeEEEEecCCceEE-EEEc-C-----CCC
Q psy6570 7 GNVTRVKREMNLKT-VLSNLHDPRGVAVDWVGKNLYWTDAG------GRSSNNIMVSTLEGRKKR-TLLN-T-----GLN 72 (713)
Q Consensus 7 ~~I~~~~~~~~~~~-~~~~~~~p~gla~D~~~~~ly~td~~------~~~~~~I~~~~~~G~~~~-~l~~-~-----~~~ 72 (713)
++|+.+|.++.+.+ .+..-..|+++ +.+.++.||++... .+..+.|.++|....... .|.. . ...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~ 105 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT 105 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence 88999998875422 25667889997 99999999999871 123578999998764433 2221 1 134
Q ss_pred CcceEEEcCCCCcEEEEccCCCCeEEEEecC------------------------------CCCcE---------EEEeC
Q psy6570 73 EPYDIALEPLSGRMFWTELGIKPRISGASID------------------------------GKNKF---------NLVDN 113 (713)
Q Consensus 73 ~p~~iavD~~~~~ly~td~~~~~~I~~~~~d------------------------------G~~~~---------~l~~~ 113 (713)
.|..+++.+.+++||++++.....|.++++. |+..+ .....
T Consensus 106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~ 185 (352)
T TIGR02658 106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPT 185 (352)
T ss_pred ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeee
Confidence 5669999998899999886522244444433 32222 11000
Q ss_pred C---------CCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEe-----cCC-------CCccceeeeeeCCe
Q psy6570 114 N---------IQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYH-----TED-------NGYKPYKLEVFEDN 172 (713)
Q Consensus 114 ~---------~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~-----~~~-------~~~~p~~i~~~~~~ 172 (713)
. +.+| ++.+..++++|.... +.|+.+++.+........ ... ....|+++..++++
T Consensus 186 ~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ 261 (352)
T TIGR02658 186 EVFHPEDEYLINHP---AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR 261 (352)
T ss_pred eeecCCccccccCC---ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence 1 1233 223324455555444 899999976653322211 110 11223445555789
Q ss_pred EEEEeC---------CCCcEEEEcccCCCcceeeeccccccccEEEEeecc
Q psy6570 173 LYFSTY---------RTNNILKINKFGNSDFNVLANNLNRASDVLILQENK 214 (713)
Q Consensus 173 ly~td~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~ 214 (713)
||++.. ..+.|+.++.........+..+ ..+.+|++....+
T Consensus 262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgk 311 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAK 311 (352)
T ss_pred EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCC
Confidence 999542 2368999998777666665554 5666777666555
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.5e-06 Score=69.10 Aligned_cols=74 Identities=26% Similarity=0.366 Sum_probs=58.5
Q ss_pred ceEEEeccCCeEEEeecCCC--------------CCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCC
Q psy6570 29 RGVAVDWVGKNLYWTDAGGR--------------SSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIK 94 (713)
Q Consensus 29 ~gla~D~~~~~ly~td~~~~--------------~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~ 94 (713)
.+|+|+..++.|||||++.+ ..++++++++..+..++++ .+|..|+||++.+....|++++....
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~-~~L~fpNGVals~d~~~vlv~Et~~~ 79 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL-DGLYFPNGVALSPDESFVLVAETGRY 79 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE-EEESSEEEEEE-TTSSEEEEEEGGGT
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh-hCCCccCeEEEcCCCCEEEEEeccCc
Confidence 37899988899999998642 3689999999998887777 56899999999999889999999888
Q ss_pred CeEEEEecCC
Q psy6570 95 PRISGASIDG 104 (713)
Q Consensus 95 ~~I~~~~~dG 104 (713)
||.|.-+.|
T Consensus 80 -Ri~rywl~G 88 (89)
T PF03088_consen 80 -RILRYWLKG 88 (89)
T ss_dssp -EEEEEESSS
T ss_pred -eEEEEEEeC
Confidence 999998887
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00019 Score=71.92 Aligned_cols=183 Identities=13% Similarity=0.109 Sum_probs=121.9
Q ss_pred CCceeEEEccCccc-----EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCc-eEEEEEc-C--CCCCcce
Q psy6570 6 SGNVTRVKREMNLK-----TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR-KKRTLLN-T--GLNEPYD 76 (713)
Q Consensus 6 ~~~I~~~~~~~~~~-----~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~-~~~~l~~-~--~~~~p~~ 76 (713)
+.-|+++++++... .++..+.+|.=|++++..++||...... ..+.|..+..|.. .+..++. . ....|.-
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~-~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPG-EEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecC-CcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 67788888885432 2267889999999999999999988621 2567777776653 2223332 1 2355689
Q ss_pred EEEcCCCCcEEEEccCCCCeEEEEec--CCCCcEEEE---eCC--------CCCCeeEEEeCCCCeEEEEcCCCCcEEEE
Q psy6570 77 IALEPLSGRMFWTELGIKPRISGASI--DGKNKFNLV---DNN--------IQWPTGITIDYPSQRLYWADPKARTIESI 143 (713)
Q Consensus 77 iavD~~~~~ly~td~~~~~~I~~~~~--dG~~~~~l~---~~~--------~~~p~glavd~~~~~LY~~d~~~~~I~~~ 143 (713)
|++|+.+++||.+..... .|.+..+ ||.....+- ... ...+...-++|+.+.|++.|.+..+|..+
T Consensus 94 vsvd~~g~~vf~AnY~~g-~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 94 VSVDEDGRFVFVANYHSG-SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEECCCCCEEEEEEccCc-eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 999998889999987765 6666544 565443321 111 12256788899999999999999999999
Q ss_pred eCCCCceeEEEec-CCCCccceeeeee--CCeEEEEeCCCCcEEEEcccC
Q psy6570 144 NLNGKDRFVVYHT-EDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKFG 190 (713)
Q Consensus 144 ~~~g~~~~~~~~~-~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~ 190 (713)
+++-...+..... ......|.=|.+. +...|++...+++|..+....
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 9873322221111 1123456666765 567899888888877665443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.7e-05 Score=80.09 Aligned_cols=187 Identities=13% Similarity=0.098 Sum_probs=111.6
Q ss_pred CcccCCceeEEEccCcccE-EecCCCCC-ceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEE
Q psy6570 2 ASISSGNVTRVKREMNLKT-VLSNLHDP-RGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIAL 79 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~~~-~~~~~~~p-~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iav 79 (713)
++..+++|..++..+.+.+ .+.....+ .++++.+.++.+|+++. .+.|.++|+.......-+..+ ..|.+|++
T Consensus 11 ~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G-~~~~~i~~ 85 (369)
T PF02239_consen 11 VERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVG-GNPRGIAV 85 (369)
T ss_dssp EEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-S-SEEEEEEE
T ss_pred EecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecC-CCcceEEE
Confidence 4566888999998875422 23334444 55778888889999864 578999999765544334444 67999999
Q ss_pred cCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCC-------CCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeE
Q psy6570 80 EPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNN-------IQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFV 152 (713)
Q Consensus 80 D~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~-------~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~ 152 (713)
.+..++||+++...+ .+..++...-.....+... -.++.+|.-.+.+...+++-...++|+.+++.......
T Consensus 86 s~DG~~~~v~n~~~~-~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 86 SPDGKYVYVANYEPG-TVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp --TTTEEEEEEEETT-EEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred cCCCCEEEEEecCCC-ceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 988889999987766 7888776543333222211 11334666665555566667788999999986643222
Q ss_pred EEe-cCCCCccceeeeeeCCeEEEEeCCCCcEEEEcccCCCcc
Q psy6570 153 VYH-TEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDF 194 (713)
Q Consensus 153 ~~~-~~~~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~ 194 (713)
+.. .....++-.+++.++.++|++....+.|..++...+...
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v 207 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV 207 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccceEE
Confidence 211 111233334444446678887777778888876544333
|
... |
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=98.23 E-value=3e-06 Score=59.20 Aligned_cols=41 Identities=34% Similarity=0.722 Sum_probs=37.1
Q ss_pred EEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCc
Q psy6570 109 NLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKD 149 (713)
Q Consensus 109 ~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~ 149 (713)
+++...+..|+|||+|+.+++|||+|.....|++++++|..
T Consensus 2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~ 42 (43)
T smart00135 2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42 (43)
T ss_pred EEEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCC
Confidence 45556889999999999999999999999999999999975
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.4e-06 Score=58.92 Aligned_cols=40 Identities=40% Similarity=0.851 Sum_probs=35.9
Q ss_pred EEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCC
Q psy6570 66 LLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKN 106 (713)
Q Consensus 66 l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~ 106 (713)
++..++..|++||+|+.+++|||+|+... .|++++++|+.
T Consensus 3 ~~~~~~~~~~~la~d~~~~~lYw~D~~~~-~I~~~~~~g~~ 42 (43)
T smart00135 3 LLSEGLGHPNGLAVDWIEGRLYWTDWGLD-VIEVANLDGTN 42 (43)
T ss_pred EEECCCCCcCEEEEeecCCEEEEEeCCCC-EEEEEeCCCCC
Confidence 44567899999999999999999999986 99999999975
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00015 Score=70.82 Aligned_cols=176 Identities=14% Similarity=0.193 Sum_probs=114.1
Q ss_pred CceeEEEccCcc-cEE-ecCCCCCceEEEeccCCeEE-EeecCCCCCCeEEEEecCCceEEEEEc------CC----CCC
Q psy6570 7 GNVTRVKREMNL-KTV-LSNLHDPRGVAVDWVGKNLY-WTDAGGRSSNNIMVSTLEGRKKRTLLN------TG----LNE 73 (713)
Q Consensus 7 ~~I~~~~~~~~~-~~~-~~~~~~p~gla~D~~~~~ly-~td~~~~~~~~I~~~~~~G~~~~~l~~------~~----~~~ 73 (713)
..|..++++|+. +++ +.++..|++|++- ++..| ++|. ...+++.+..+-........ .. -..
T Consensus 108 ~~iVElt~~GdlirtiPL~g~~DpE~Ieyi--g~n~fvi~dE---R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~G 182 (316)
T COG3204 108 AAIVELTKEGDLIRTIPLTGFSDPETIEYI--GGNQFVIVDE---RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKG 182 (316)
T ss_pred ceEEEEecCCceEEEecccccCChhHeEEe--cCCEEEEEeh---hcceEEEEEEcCCccEEeccceEEeccccCCCCcC
Confidence 356677777764 344 7789999999985 44444 4666 56777776655432111111 10 123
Q ss_pred cceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeC----C----CCCCeeEEEeCCCCeEEEEcCCCCcEEEEeC
Q psy6570 74 PYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDN----N----IQWPTGITIDYPSQRLYWADPKARTIESINL 145 (713)
Q Consensus 74 p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~----~----~~~p~glavd~~~~~LY~~d~~~~~I~~~~~ 145 (713)
-.|||.|+.+++||++...+.-+|+....+-+....-+.. . +..-.||.+|+.++.|++-...++++..++.
T Consensus 183 fEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~ 262 (316)
T COG3204 183 FEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL 262 (316)
T ss_pred ceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEec
Confidence 4589999999999999866554677766433221111110 0 2345789999999999998888999999999
Q ss_pred CCCceeEEEec------CCCCccceeeeee-CCeEEEEeCCCCcEEEEcc
Q psy6570 146 NGKDRFVVYHT------EDNGYKPYKLEVF-EDNLYFSTYRTNNILKINK 188 (713)
Q Consensus 146 ~g~~~~~~~~~------~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~ 188 (713)
+|..+..+... ....+++.||+.+ ++.||++. ..+..+++.+
T Consensus 263 ~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS-EPnlfy~F~~ 311 (316)
T COG3204 263 SGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS-EPNLFYRFTP 311 (316)
T ss_pred CCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe-cCCcceeccc
Confidence 99865544321 1146778999997 66888875 4455666654
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00025 Score=72.33 Aligned_cols=179 Identities=16% Similarity=0.199 Sum_probs=109.7
Q ss_pred CceEEEeccCCeEEEeecCCC---------CCCeEEEEecCCceEE--EEEcCC----CCCcceEEEcCCC-----CcEE
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGR---------SSNNIMVSTLEGRKKR--TLLNTG----LNEPYDIALEPLS-----GRMF 87 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~---------~~~~I~~~~~~G~~~~--~l~~~~----~~~p~~iavD~~~-----~~ly 87 (713)
+.++.+|. .++||+.|.+.. ...+|..+++...... ..+... ....++|+||... +++|
T Consensus 3 V~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 3 VQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred ccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 46789995 689999998641 1258999999875532 223222 2345679999855 5899
Q ss_pred EEccCCCCeEEEEecCCCCcEEEEeCC----------------C---CCCeeEEEeC---CCCeEEEEcCCCCcEEEEeC
Q psy6570 88 WTELGIKPRISGASIDGKNKFNLVDNN----------------I---QWPTGITIDY---PSQRLYWADPKARTIESINL 145 (713)
Q Consensus 88 ~td~~~~~~I~~~~~dG~~~~~l~~~~----------------~---~~p~glavd~---~~~~LY~~d~~~~~I~~~~~ 145 (713)
+||.+.. .|.++++.......+.... + ....||++.+ .+++|||.-....+++++..
T Consensus 82 ItD~~~~-glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T 160 (287)
T PF03022_consen 82 ITDSGGP-GLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPT 160 (287)
T ss_dssp EEETTTC-EEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEH
T ss_pred EeCCCcC-cEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEH
Confidence 9998876 7888887654333332210 1 1245788876 44689999988889999883
Q ss_pred ----CCC---------ceeEEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCC---Ccceeeecc---ccccc
Q psy6570 146 ----NGK---------DRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGN---SDFNVLANN---LNRAS 205 (713)
Q Consensus 146 ----~g~---------~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~---~~~~~~~~~---~~~~~ 205 (713)
+.+ ..+.+... .....|++++ .+.||+++...+.|.+.+..+. ....+++.. +..|.
T Consensus 161 ~~L~~~~~~~~~~~~~~v~~lG~k---~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd 237 (287)
T PF03022_consen 161 SVLRDPSLSDAQALASQVQDLGDK---GSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPD 237 (287)
T ss_dssp HHHCSTT--HHH-HHHT-EEEEE------SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEE
T ss_pred HHhhCccccccccccccceecccc---CCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccc
Confidence 221 12233222 2244666766 7799999999999999998752 233344332 56677
Q ss_pred cEEEEe
Q psy6570 206 DVLILQ 211 (713)
Q Consensus 206 ~i~v~~ 211 (713)
++++.+
T Consensus 238 ~~~i~~ 243 (287)
T PF03022_consen 238 GLKIDP 243 (287)
T ss_dssp EEEE-T
T ss_pred eeeecc
Confidence 787777
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00013 Score=68.53 Aligned_cols=124 Identities=10% Similarity=0.132 Sum_probs=86.1
Q ss_pred CCceeEEEccCcccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEe--cCC---ceEEEEEcC------CCCCc
Q psy6570 6 SGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVST--LEG---RKKRTLLNT------GLNEP 74 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~--~~G---~~~~~l~~~------~~~~p 74 (713)
.+.+++..++++.+.+...+.-|.||++|.....+|++|+ .+..|..++ ..+ ..+++++.- ....|
T Consensus 138 ~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs---ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~P 214 (310)
T KOG4499|consen 138 GGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDS---LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEP 214 (310)
T ss_pred ccEEEEeccCCCceeeehhccCCccccccccCcEEEEEcc---CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCC
Confidence 4566777777788888999999999999999999999999 778886555 333 224444431 23568
Q ss_pred ceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCC-CCeEEEEc
Q psy6570 75 YDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYP-SQRLYWAD 134 (713)
Q Consensus 75 ~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~-~~~LY~~d 134 (713)
.||+||. .|+||++-++.. +|+++++....+..-+.....+.+..++--. -+.||++-
T Consensus 215 DGm~ID~-eG~L~Va~~ng~-~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 215 DGMTIDT-EGNLYVATFNGG-TVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CcceEcc-CCcEEEEEecCc-EEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 9999995 899999999877 9999988755443333323334455555422 13566653
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00047 Score=67.50 Aligned_cols=162 Identities=16% Similarity=0.144 Sum_probs=108.0
Q ss_pred CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEE-EccCCCCeEEEEec
Q psy6570 24 NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFW-TELGIKPRISGASI 102 (713)
Q Consensus 24 ~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~-td~~~~~~I~~~~~ 102 (713)
......+|++++.++.||.+-. ....|..++++|...+++-..++..|.+|+.- .+..|+ +|.... +++.+.+
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n---~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyi--g~n~fvi~dER~~-~l~~~~v 157 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTN---KPAAIVELTKEGDLIRTIPLTGFSDPETIEYI--GGNQFVIVDERDR-ALYLFTV 157 (316)
T ss_pred ccccccceeeCCCcceEEEecC---CCceEEEEecCCceEEEecccccCChhHeEEe--cCCEEEEEehhcc-eEEEEEE
Confidence 3445789999999999998765 56789999999999988887889999999995 455555 454444 7887777
Q ss_pred CCCCcEEEEeC----------CCCCCeeEEEeCCCCeEEEEcCCC-CcEEEEeCCCCceeEEEecCC------CCcccee
Q psy6570 103 DGKNKFNLVDN----------NIQWPTGITIDYPSQRLYWADPKA-RTIESINLNGKDRFVVYHTED------NGYKPYK 165 (713)
Q Consensus 103 dG~~~~~l~~~----------~~~~p~glavd~~~~~LY~~d~~~-~~I~~~~~~g~~~~~~~~~~~------~~~~p~~ 165 (713)
|-......+.. .-..-.|||.|+.+++||++-..+ -+|+.++..-+...+-..... .+..-.|
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 65433222211 122346999999999999996543 457766633221111111100 1223345
Q ss_pred eeee--CCeEEEEeCCCCcEEEEcccCC
Q psy6570 166 LEVF--EDNLYFSTYRTNNILKINKFGN 191 (713)
Q Consensus 166 i~~~--~~~ly~td~~~~~i~~~~~~~~ 191 (713)
+.++ .++|++-...++.+..++..+.
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCC
Confidence 5655 6788888888888888887655
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00058 Score=67.31 Aligned_cols=187 Identities=13% Similarity=0.120 Sum_probs=108.0
Q ss_pred cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecC-----CceEEEEEc--C-----CCCCcceEEEcCCCC--
Q psy6570 19 KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE-----GRKKRTLLN--T-----GLNEPYDIALEPLSG-- 84 (713)
Q Consensus 19 ~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~-----G~~~~~l~~--~-----~~~~p~~iavD~~~~-- 84 (713)
..+...|.+|+||++.+. +.++|+|. ..+....++.+ |....+++. . ....|.|+++....+
T Consensus 16 ~~tDp~L~N~WGia~~p~-~~~WVadn---gT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~ 91 (336)
T TIGR03118 16 QIVDPGLRNAWGLSYRPG-GPFWVANT---GTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFV 91 (336)
T ss_pred cccCccccccceeEecCC-CCEEEecC---CcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceE
Confidence 444678999999999874 68888998 78888888877 433222222 1 235799999985433
Q ss_pred -----------cEEEEccCCCCeEEEEecCCC---CcEEEEeC--CCCCCeeEEEeCC--CCeEEEEcCCCCcEEEEeCC
Q psy6570 85 -----------RMFWTELGIKPRISGASIDGK---NKFNLVDN--NIQWPTGITIDYP--SQRLYWADPKARTIESINLN 146 (713)
Q Consensus 85 -----------~ly~td~~~~~~I~~~~~dG~---~~~~l~~~--~~~~p~glavd~~--~~~LY~~d~~~~~I~~~~~~ 146 (713)
+||.|+.+.- .=|+-..+-+ ...+++.. ....=.||||-.. .++||-+|-.+++|.+++-.
T Consensus 92 vt~~g~~~~a~Fif~tEdGTi-saW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 92 VSGEGITGPSRFLFVTEDGTL-SGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EcCCCcccceeEEEEeCCceE-EeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 2555554422 1122222222 11223321 1223368888744 67999999999999998643
Q ss_pred CCceeE---EEecC-CCCccceeeeeeCCeEEEEeCC-------------CCcEEEEcccCCCcceeeec-cccccccEE
Q psy6570 147 GKDRFV---VYHTE-DNGYKPYKLEVFEDNLYFSTYR-------------TNNILKINKFGNSDFNVLAN-NLNRASDVL 208 (713)
Q Consensus 147 g~~~~~---~~~~~-~~~~~p~~i~~~~~~ly~td~~-------------~~~i~~~~~~~~~~~~~~~~-~~~~~~~i~ 208 (713)
-..+.+ +.... -....|++|...+++||++=.. .+.|-+++..+.-.+.+... .+..|-+|+
T Consensus 171 f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a 250 (336)
T TIGR03118 171 FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLA 250 (336)
T ss_pred cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceee
Confidence 322211 00110 0234678899899999998321 23455666554433333222 366666666
Q ss_pred EE
Q psy6570 209 IL 210 (713)
Q Consensus 209 v~ 210 (713)
+-
T Consensus 251 ~A 252 (336)
T TIGR03118 251 IA 252 (336)
T ss_pred eC
Confidence 53
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0011 Score=72.74 Aligned_cols=179 Identities=12% Similarity=0.068 Sum_probs=111.0
Q ss_pred CceeEEEccCcccEEecCCC-CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCc
Q psy6570 7 GNVTRVKREMNLKTVLSNLH-DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGR 85 (713)
Q Consensus 7 ~~I~~~~~~~~~~~~~~~~~-~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ 85 (713)
..|+.+++.+.....+..+. ....+++.+.++.|+++.... ....|+++++++...+.+... .......++.|..+.
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~-g~~~Iy~~dl~tg~~~~lt~~-~~~~~~p~wSpDG~~ 319 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKD-GQPEIYVVDIATKALTRITRH-RAIDTEPSWHPDGKS 319 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCC-CCeEEEEEECCCCCeEECccC-CCCccceEECCCCCE
Confidence 45778887765433333332 234678888888888764311 345799999988776655533 234556778887777
Q ss_pred EEEEc-cCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCC--CCcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 86 MFWTE-LGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPK--ARTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 86 ly~td-~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~--~~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
|+++. ......|+++++++...+.+.. ......+.++++++++||++... ..+|+++++++...+.+..... ...
T Consensus 320 I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~-d~~ 397 (448)
T PRK04792 320 LIFTSERGGKPQIYRVNLASGKVSRLTF-EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRL-DES 397 (448)
T ss_pred EEEEECCCCCceEEEEECCCCCEEEEec-CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCC-CCC
Confidence 87764 3334589999998766555532 22234457899889999887643 3478999998876665543211 122
Q ss_pred ceeeeeeCCeEEEEeCCCC--cEEEEcccC
Q psy6570 163 PYKLEVFEDNLYFSTYRTN--NILKINKFG 190 (713)
Q Consensus 163 p~~i~~~~~~ly~td~~~~--~i~~~~~~~ 190 (713)
| .++.++..|+++....+ .++.++..+
T Consensus 398 p-s~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 398 P-SVAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred c-eECCCCCEEEEEEecCCceEEEEEECCC
Confidence 3 45556777777654333 355565543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0017 Score=70.20 Aligned_cols=182 Identities=10% Similarity=-0.003 Sum_probs=112.9
Q ss_pred CCceeEEEccCcccEEecCCCC-CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCC
Q psy6570 6 SGNVTRVKREMNLKTVLSNLHD-PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSG 84 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~~~~~-p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~ 84 (713)
...|+.+++.+.+...+..... ....++.+.+++|+++.... ....|+++++++...+.|..... .-....+.|..+
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~-g~~~Iy~~dl~~g~~~~LT~~~~-~d~~p~~SPDG~ 289 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPK-GQPDIYLYDTNTKTLTQITNYPG-IDVNGNFVEDDK 289 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccC-CCcEEEEEECCCCcEEEcccCCC-ccCccEECCCCC
Confidence 4568888887655433333332 22356777777887765421 35689999998877666654321 122346777777
Q ss_pred cEEEEc-cCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCC--------CcEEEEeCCCCceeEEEe
Q psy6570 85 RMFWTE-LGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKA--------RTIESINLNGKDRFVVYH 155 (713)
Q Consensus 85 ~ly~td-~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~--------~~I~~~~~~g~~~~~~~~ 155 (713)
.|||+. ....+.|+++++++...+.+...... ..+++|++++|.++.... ..|+.+++++...+.|..
T Consensus 290 ~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~---~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 290 RIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN---NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred EEEEEECCCCCceEEEEECCCCCeEeCccCCCc---CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC
Confidence 787765 33446899999998777666543222 248898899887775332 479999998887666654
Q ss_pred cCCCCccceeeeeeCCeEEEEeCC--CCcEEEEcccCCCcc
Q psy6570 156 TEDNGYKPYKLEVFEDNLYFSTYR--TNNILKINKFGNSDF 194 (713)
Q Consensus 156 ~~~~~~~p~~i~~~~~~ly~td~~--~~~i~~~~~~~~~~~ 194 (713)
.. ......++.++..|+++... ...+..++..+....
T Consensus 367 ~~--~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~ 405 (419)
T PRK04043 367 NG--VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSF 405 (419)
T ss_pred CC--CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeE
Confidence 32 22223355667777776533 233667776654443
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0019 Score=70.91 Aligned_cols=180 Identities=10% Similarity=0.004 Sum_probs=110.7
Q ss_pred ceeEEEccCcc-cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcE
Q psy6570 8 NVTRVKREMNL-KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRM 86 (713)
Q Consensus 8 ~I~~~~~~~~~-~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~l 86 (713)
+|+.++.++.. +++...-......++.+.+++|+|+.... ....|++.++++...+.+.... ......++.|....|
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~-g~~~L~~~dl~tg~~~~lt~~~-g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFEN-RKAEIFVQDIYTQVREKVTSFP-GINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecC-CCcEEEEEECCCCCeEEecCCC-CCcCCeeECCCCCEE
Confidence 45556676643 44444333345678888888888875421 3457999999876665554322 223467888888878
Q ss_pred EEEc-cCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcC--CCCcEEEEeCCCCceeEEEecCCCCccc
Q psy6570 87 FWTE-LGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADP--KARTIESINLNGKDRFVVYHTEDNGYKP 163 (713)
Q Consensus 87 y~td-~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~--~~~~I~~~~~~g~~~~~~~~~~~~~~~p 163 (713)
+++. ......|+++++++...+.+.. ........++++++++|+++.. ....|+++++++...+.+..... ....
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~-~~~~ 354 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTRITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE-QNLG 354 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC-CCcC
Confidence 7753 3333479999998876665543 2234466788888888877643 34579999998765554432211 1112
Q ss_pred eeeeeeCCeEEEEeCCC--CcEEEEcccCC
Q psy6570 164 YKLEVFEDNLYFSTYRT--NNILKINKFGN 191 (713)
Q Consensus 164 ~~i~~~~~~ly~td~~~--~~i~~~~~~~~ 191 (713)
..+..++++||.+.... ..|+.++..++
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 24455677887775433 35666665544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0023 Score=70.09 Aligned_cols=182 Identities=9% Similarity=0.069 Sum_probs=112.1
Q ss_pred CCceeEEEccCcccEEecCCC-CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCC
Q psy6570 6 SGNVTRVKREMNLKTVLSNLH-DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSG 84 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~~~~-~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~ 84 (713)
...|+.+++.+.....+.... .....++.+.+++|+++-... ....|+++++++...+.+.... ......++.|..+
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~-g~~~Iy~~d~~~~~~~~Lt~~~-~~~~~~~~spDG~ 302 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQG-GNTDIYTMDLRSGTTTRLTDSP-AIDTSPSYSPDGS 302 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecC-CCceEEEEECCCCceEEccCCC-CccCceeEcCCCC
Confidence 356777787765433333333 335677888888887664311 3457999999887766655332 3344577887777
Q ss_pred cEEEE-ccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCC--CCcEEEEeCCCCceeEEEecCCCCc
Q psy6570 85 RMFWT-ELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPK--ARTIESINLNGKDRFVVYHTEDNGY 161 (713)
Q Consensus 85 ~ly~t-d~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~--~~~I~~~~~~g~~~~~~~~~~~~~~ 161 (713)
+|+++ +....+.|++++++|...+.+.... ..-..+++.+++++|+++... ..+|+.+++++...+.+.... ..
T Consensus 303 ~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~--~~ 379 (435)
T PRK05137 303 QIVFESDRSGSPQLYVMNADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGF--LV 379 (435)
T ss_pred EEEEEECCCCCCeEEEEECCCCCeEEeecCC-CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCC--CC
Confidence 67665 4444458999999987776665422 223457888889998887543 347999999887665554321 11
Q ss_pred cceeeeeeCCeEEEEeCCC-----CcEEEEcccCCC
Q psy6570 162 KPYKLEVFEDNLYFSTYRT-----NNILKINKFGNS 192 (713)
Q Consensus 162 ~p~~i~~~~~~ly~td~~~-----~~i~~~~~~~~~ 192 (713)
....++.++..||++.... ..++.++..++.
T Consensus 380 ~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 380 EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred CCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 2223444566777654322 357777765543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0024 Score=70.00 Aligned_cols=180 Identities=12% Similarity=0.132 Sum_probs=110.1
Q ss_pred CceeEEEccCcccEEecCCC-CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCc
Q psy6570 7 GNVTRVKREMNLKTVLSNLH-DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGR 85 (713)
Q Consensus 7 ~~I~~~~~~~~~~~~~~~~~-~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ 85 (713)
..|+++++.+.....+.... ....+++.+.+++|+++-... ....|++.++++...+.+... ......+++.|..+.
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~-g~~~Iy~~d~~~g~~~~lt~~-~~~~~~~~~spDG~~ 305 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRD-GNPEIYVMDLGSRQLTRLTNH-FGIDTEPTWAPDGKS 305 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCC-CCceEEEEECCCCCeEECccC-CCCccceEECCCCCE
Confidence 45788887765433333322 234678888888887764311 345799999988766655432 223456788887777
Q ss_pred EEEE-ccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCC--CCcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 86 MFWT-ELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPK--ARTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 86 ly~t-d~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~--~~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
|+++ +....+.|+++++++...+.+.. .......+++++++++|+++... ..+|+.+++++...+.+.... ....
T Consensus 306 l~f~sd~~g~~~iy~~dl~~g~~~~lt~-~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~-~~~~ 383 (433)
T PRK04922 306 IYFTSDRGGRPQIYRVAASGGSAERLTF-QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS-LDES 383 (433)
T ss_pred EEEEECCCCCceEEEEECCCCCeEEeec-CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCC-CCCC
Confidence 7665 43334579999988766555543 22334568999999999887543 336999998776655443321 1112
Q ss_pred ceeeeeeCCeEEEEeCC--CCcEEEEcccCC
Q psy6570 163 PYKLEVFEDNLYFSTYR--TNNILKINKFGN 191 (713)
Q Consensus 163 p~~i~~~~~~ly~td~~--~~~i~~~~~~~~ 191 (713)
| .++.++..|+++... ...|+.++..++
T Consensus 384 p-~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 384 P-SFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred c-eECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 2 344456667666432 345667766543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0021 Score=70.45 Aligned_cols=180 Identities=12% Similarity=0.040 Sum_probs=110.0
Q ss_pred ceeEEEccCcc-cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcE
Q psy6570 8 NVTRVKREMNL-KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRM 86 (713)
Q Consensus 8 ~I~~~~~~~~~-~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~l 86 (713)
+|..++.++.. +.+...-.....+++.+.++.|+++.... ....|++.++++...+.+.... .....+++.|..++|
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~-~~~~l~~~dl~~g~~~~l~~~~-g~~~~~~~SpDG~~l 262 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFER-GRSAIYVQDLATGQRELVASFR-GINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCC-CCcEEEEEECCCCCEEEeccCC-CCccCceECCCCCEE
Confidence 46666766643 33443333445678888888888875421 3457999999876665554322 233467888877788
Q ss_pred EEEc-cCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcC--CCCcEEEEeCCCCceeEEEecCCCCccc
Q psy6570 87 FWTE-LGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADP--KARTIESINLNGKDRFVVYHTEDNGYKP 163 (713)
Q Consensus 87 y~td-~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~--~~~~I~~~~~~g~~~~~~~~~~~~~~~p 163 (713)
+++. ......|++.++++...+.+.. .......+++++++++|+++.. +...|+.+++++...+.+..... ....
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~-~~~~ 340 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLTRLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGN-YNAR 340 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCC-CccC
Confidence 7763 3333489999998876655543 2223456789988887777642 34569999987765554432211 1122
Q ss_pred eeeeeeCCeEEEEeCCC--CcEEEEcccCC
Q psy6570 164 YKLEVFEDNLYFSTYRT--NNILKINKFGN 191 (713)
Q Consensus 164 ~~i~~~~~~ly~td~~~--~~i~~~~~~~~ 191 (713)
..+..++++|+++.... ..|+.++..++
T Consensus 341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 341 ASVSPDGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred EEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence 34445677887765432 24666665444
|
|
| >PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium | Back alignment and domain information |
|---|
Probab=97.74 E-value=4.4e-06 Score=75.33 Aligned_cols=130 Identities=25% Similarity=0.635 Sum_probs=78.5
Q ss_pred cEEcCCCCCeeccCCCCCC---CCCCcccCCCCCCCCCCCCCCC-----CCCCCCcEEeecC-----CCceeeCCCCCc-
Q psy6570 517 GTCIPNSKNNVCKCPSQYT---GRRCECAVGDTSCASLANKCTP-----NYCSNNGTCVLIE-----GKPSCKCLPPYS- 582 (713)
Q Consensus 517 g~C~~~~~~~~C~C~~g~~---G~~C~~~~~~~~c~~~~~~C~~-----~~C~~~~~C~~~~-----g~~~C~C~~G~~- 582 (713)
|..+..+..+.|.|.+||. -+.||.. .+|.. .+|...++|++.. ..|.|.|.+||+
T Consensus 11 G~LiQMSNHfEC~Cnegfvl~~EntCE~k----------v~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~ 80 (197)
T PF06247_consen 11 GYLIQMSNHFECKCNEGFVLKNENTCEEK----------VECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYIL 80 (197)
T ss_dssp EEEEEESSEEEEEESTTEEEEETTEEEE--------------SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEE
T ss_pred CEEEEccCceEEEcCCCcEEccccccccc----------eecCcccccCccccchhhhhcCCCcccceeEEEecccCcee
Confidence 5667777789999999996 4456533 23432 3688899999875 478999999997
Q ss_pred -CCCCCcCCCCCCC-CCCCCCCCeEecCCC--CcceeecCCCcc---cCCCCcC--CCCCCCCCCCCeecCCCCccCCCC
Q psy6570 583 -GKQCTEREDSPSC-HNYCDNAGLCSYSKQ--GKPVCTCVNGWS---GITCSER--VSCAHFCFNGGTCREQNYSLDPDL 653 (713)
Q Consensus 583 -G~~C~~~~~~~~C-~~~C~~~g~C~~~~~--g~~~C~C~~G~~---G~~C~~~--~~C~~~C~~~~~C~~~~~~~~~~~ 653 (713)
...|.. +.| ...|. .|.|+-... ....|+|.-|+. ...|... ..|...|..+..|.. .+.
T Consensus 81 ~~~vCvp----~~C~~~~Cg-~GKCI~d~~~~~~~~CSC~IGkV~~dn~kCtk~G~T~C~LKCk~nE~CK~------~~~ 149 (197)
T PF06247_consen 81 KQGVCVP----NKCNNKDCG-SGKCILDPDNPNNPTCSCNIGKVPDDNKKCTKTGETKCSLKCKENEECKL------VDG 149 (197)
T ss_dssp SSSSEEE----GGGSS---T-TEEEEEEEGGGSEEEEEE-TEEETTTTTESEEEE--------TTTEEEEE------ETT
T ss_pred eCCeEch----hhcCceecC-CCeEEecCCCCCCceeEeeeceEeccCCcccCCCccceeeecCCCcceee------eCc
Confidence 335654 456 45676 589975431 245899999997 2234432 236666777778876 445
Q ss_pred CceeeCCCCcccCC
Q psy6570 654 KPICICPRGYAGVR 667 (713)
Q Consensus 654 ~~~C~C~~Gy~G~~ 667 (713)
-|+|.|.+|+.++.
T Consensus 150 ~Y~C~~~~~~~~~~ 163 (197)
T PF06247_consen 150 YYKCVCKEGFPGDG 163 (197)
T ss_dssp EEEEEE-TT-EEET
T ss_pred EEEeecCCCCCCCC
Confidence 58999999997664
|
Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0034 Score=62.02 Aligned_cols=123 Identities=14% Similarity=0.089 Sum_probs=85.2
Q ss_pred cceEEEcCC--CCcEEEEccCCCCeEEEEecCCCCcEEEEe-----C---CCCCCeeEEEeCCCCeEEEEc---------
Q psy6570 74 PYDIALEPL--SGRMFWTELGIKPRISGASIDGKNKFNLVD-----N---NIQWPTGITIDYPSQRLYWAD--------- 134 (713)
Q Consensus 74 p~~iavD~~--~~~ly~td~~~~~~I~~~~~dG~~~~~l~~-----~---~~~~p~glavd~~~~~LY~~d--------- 134 (713)
=+||||-.. ..+||-+|..+. +|.+++- +..++.+. . .-..|.+|.-- .++|||+-
T Consensus 140 YkGLAi~~~~~~~~LYaadF~~g-~IDVFd~--~f~~~~~~g~F~DP~iPagyAPFnIqni--g~~lyVtYA~qd~~~~d 214 (336)
T TIGR03118 140 YKGLAVGPTGGGDYLYAANFRQG-RIDVFKG--SFRPPPLPGSFIDPALPAGYAPFNVQNL--GGTLYVTYAQQDADRND 214 (336)
T ss_pred eeeeEEeecCCCceEEEeccCCC-ceEEecC--ccccccCCCCccCCCCCCCCCCcceEEE--CCeEEEEEEecCCcccc
Confidence 346666533 678999999766 9998743 33322221 1 12246666554 79999982
Q ss_pred ----CCCCcEEEEeCCCCceeEEEecCCCCccceeeeee-------CCeEEEEeCCCCcEEEEcccCCCcceeeecccc
Q psy6570 135 ----PKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF-------EDNLYFSTYRTNNILKINKFGNSDFNVLANNLN 202 (713)
Q Consensus 135 ----~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~-------~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~ 202 (713)
.+.+.|-+++++|..++.+.+.. .+..|-||++. .+.|.+-+.+.++|-.++...+..+..|.....
T Consensus 215 ~v~G~G~G~VdvFd~~G~l~~r~as~g-~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 215 EVAGAGLGYVNVFTLNGQLLRRVASSG-RLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred cccCCCcceEEEEcCCCcEEEEeccCC-cccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCC
Confidence 23457999999999888876554 37888888772 578999999999999999876766555554433
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins | Back alignment and domain information |
|---|
Probab=97.73 E-value=1.8e-05 Score=50.82 Aligned_cols=30 Identities=47% Similarity=1.142 Sum_probs=22.3
Q ss_pred CCCCCCCCCcEEeecC-CCceeeCCCCCcCC
Q psy6570 555 CTPNYCSNNGTCVLIE-GKPSCKCLPPYSGK 584 (713)
Q Consensus 555 C~~~~C~~~~~C~~~~-g~~~C~C~~G~~G~ 584 (713)
|.+++|.++|+|+... +.|+|.|++||+|+
T Consensus 1 C~~~~C~n~g~C~~~~~~~y~C~C~~G~~G~ 31 (32)
T PF00008_consen 1 CSSNPCQNGGTCIDLPGGGYTCECPPGYTGK 31 (32)
T ss_dssp TTTTSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred CCCCcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence 3455777778888777 77888888888775
|
The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A .... |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0042 Score=68.14 Aligned_cols=182 Identities=8% Similarity=0.025 Sum_probs=112.1
Q ss_pred CCceeEEEccCcc-cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCC
Q psy6570 6 SGNVTRVKREMNL-KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSG 84 (713)
Q Consensus 6 ~~~I~~~~~~~~~-~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~ 84 (713)
..+|+.++.++.. +.+.........+++.+.+++|+++.... ....|++.++++...+.+.... ......++.|..+
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~-g~~~i~~~dl~~g~~~~l~~~~-g~~~~~~~SPDG~ 258 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYAN-GRPRVYLLDLETGQRELVGNFP-GMTFAPRFSPDGR 258 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecC-CCCEEEEEECCCCcEEEeecCC-CcccCcEECCCCC
Confidence 3467777877754 33333334456677888877777664321 3468999999877666554322 2345678888777
Q ss_pred cEEEEcc-CCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcC--CCCcEEEEeCCCCceeEEEecCCCCc
Q psy6570 85 RMFWTEL-GIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADP--KARTIESINLNGKDRFVVYHTEDNGY 161 (713)
Q Consensus 85 ~ly~td~-~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~--~~~~I~~~~~~g~~~~~~~~~~~~~~ 161 (713)
.|+++.. .....|+++++++...+.|.. ........++++++.+|+++.. +...|+.+++++...+.+.......
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~-~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~- 336 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTD-SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRY- 336 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccC-CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcc-
Confidence 7776643 333589999998877666643 2223456788888888776642 3457999999987666654332111
Q ss_pred cceeeeeeCCeEEEEeCCC--CcEEEEcccCC
Q psy6570 162 KPYKLEVFEDNLYFSTYRT--NNILKINKFGN 191 (713)
Q Consensus 162 ~p~~i~~~~~~ly~td~~~--~~i~~~~~~~~ 191 (713)
....+..++++|+++.... ..|+.++..++
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 1123445567777665332 34666665433
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0051 Score=67.16 Aligned_cols=181 Identities=13% Similarity=0.040 Sum_probs=108.9
Q ss_pred CceeEEEccCcc-cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCc
Q psy6570 7 GNVTRVKREMNL-KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGR 85 (713)
Q Consensus 7 ~~I~~~~~~~~~-~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ 85 (713)
.+|+.++.++.. +.+...-.....+++.+.+++|+++.... ....|++.++++...+.+.... ......++.|..+.
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~-~~~~I~~~dl~~g~~~~l~~~~-g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFES-KKPVVYVHDLATGRRRVVANFK-GSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccC-CCcEEEEEECCCCCEEEeecCC-CCccceEECCCCCE
Confidence 457777776643 33333333345678888888887765421 3457999999876665554222 33457888887778
Q ss_pred EEEE-ccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEc-C-CCCcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 86 MFWT-ELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWAD-P-KARTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 86 ly~t-d~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d-~-~~~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
|+++ +.....+|+++++++...+.+.. ........++++++.+|+++. . +...|+.+++++...+.+..... ...
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~-~~~ 331 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSGLRRLTQ-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGS-YNT 331 (427)
T ss_pred EEEEEccCCCceEEEEECCCCCcEECCC-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCC-CcC
Confidence 8775 33334589999998877665543 222335578998888877653 2 45579999988765544432211 111
Q ss_pred ceeeeeeCCeEEEEeCCCC--cEEEEcccCC
Q psy6570 163 PYKLEVFEDNLYFSTYRTN--NILKINKFGN 191 (713)
Q Consensus 163 p~~i~~~~~~ly~td~~~~--~i~~~~~~~~ 191 (713)
...+..++.+|+++....+ .|+.++..++
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 2234556777776653322 4666665443
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0059 Score=66.65 Aligned_cols=180 Identities=11% Similarity=0.052 Sum_probs=109.2
Q ss_pred CceeEEEccCcccEEecCC-CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCc
Q psy6570 7 GNVTRVKREMNLKTVLSNL-HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGR 85 (713)
Q Consensus 7 ~~I~~~~~~~~~~~~~~~~-~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ 85 (713)
..|+.+++.+.....+..+ .....+++.+.+.+|+++.... ....|+++++++...+.+.... ......++.|..+.
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~-g~~~I~~~d~~tg~~~~lt~~~-~~~~~~~wSPDG~~ 300 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT-GSLNLYVMDLASGQIRQVTDGR-SNNTEPTWFPDSQN 300 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCC-CCcEEEEEECCCCCEEEccCCC-CCcCceEECCCCCE
Confidence 4566677665432222222 2345678999888898874411 2346999999887666665432 34567888887776
Q ss_pred EEE-EccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcC--CCCcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 86 MFW-TELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADP--KARTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 86 ly~-td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~--~~~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
|++ ++.....+|+++++++...+.+.. .......+++.+++++|+++.. ....|+.+++++...+.+.... ...
T Consensus 301 I~f~s~~~g~~~Iy~~d~~~g~~~~lt~-~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~~~ 377 (429)
T PRK03629 301 LAYTSDQAGRPQVYKVNINGGAPQRITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--LDE 377 (429)
T ss_pred EEEEeCCCCCceEEEEECCCCCeEEeec-CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--CCC
Confidence 755 444434589999999876665543 2233456888988888887653 3346888998877666554321 112
Q ss_pred ceeeeeeCCeEEEEeCCCC--cEEEEcccCC
Q psy6570 163 PYKLEVFEDNLYFSTYRTN--NILKINKFGN 191 (713)
Q Consensus 163 p~~i~~~~~~ly~td~~~~--~i~~~~~~~~ 191 (713)
...++.++..|+.+....+ .++.++..+.
T Consensus 378 ~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 378 TPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred CceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 2235555666766654322 2444554433
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0063 Score=66.44 Aligned_cols=181 Identities=12% Similarity=0.011 Sum_probs=111.4
Q ss_pred CceeEEEccCcc-cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCc
Q psy6570 7 GNVTRVKREMNL-KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGR 85 (713)
Q Consensus 7 ~~I~~~~~~~~~-~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ 85 (713)
.+|+.++.++.. +.+...-.....+++.+.+..|.++.... ....|++.++++...+.+.... .....+++.|...+
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~-g~~~i~i~dl~~G~~~~l~~~~-~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVRQVASFP-RHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCCeEEccCCC-CCcCCeEECCCCCE
Confidence 367788877754 44444444456788998888877654311 3467999998876665554322 23446889998888
Q ss_pred EEEEcc-CCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEE-cC-CCCcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 86 MFWTEL-GIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWA-DP-KARTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 86 ly~td~-~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~-d~-~~~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
|+|+.. .....|+..++++...+.+... -.....+++++++++|+++ +. +..+|+++++++...+.+..... ...
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~lt~~-~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~-~~~ 334 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQVTDG-RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGS-QNQ 334 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEccCC-CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCC-Ccc
Confidence 988743 2234799999988766655432 2244678899888877554 43 34589999998876655543211 111
Q ss_pred ceeeeeeCCeEEEEeCC--CCcEEEEcccCC
Q psy6570 163 PYKLEVFEDNLYFSTYR--TNNILKINKFGN 191 (713)
Q Consensus 163 p~~i~~~~~~ly~td~~--~~~i~~~~~~~~ 191 (713)
...+..++.+|+++... ...|+.++..++
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 22334456666665432 234556665443
|
|
| >PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=8.2e-05 Score=62.30 Aligned_cols=34 Identities=35% Similarity=0.886 Sum_probs=25.6
Q ss_pred CCCCCCCeecCCCCccCCCCCceeeCCCCcccCCCCccc
Q psy6570 634 HFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTLV 672 (713)
Q Consensus 634 ~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~~~ 672 (713)
+.|.++ +|.. +.....+.|.|..||+|.+||...
T Consensus 51 ~YClHG-~C~y----I~dl~~~~CrC~~GYtGeRCEh~d 84 (139)
T PHA03099 51 GYCLHG-DCIH----ARDIDGMYCRCSHGYTGIRCQHVV 84 (139)
T ss_pred CEeECC-EEEe----eccCCCceeECCCCccccccccee
Confidence 457774 8876 233445899999999999998765
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0055 Score=66.35 Aligned_cols=180 Identities=12% Similarity=0.058 Sum_probs=111.2
Q ss_pred CCceeEEEccCcc-cEEecCCCCCceEEEeccCCe-EEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCC
Q psy6570 6 SGNVTRVKREMNL-KTVLSNLHDPRGVAVDWVGKN-LYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLS 83 (713)
Q Consensus 6 ~~~I~~~~~~~~~-~~~~~~~~~p~gla~D~~~~~-ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~ 83 (713)
..+|+.++.+|.. +++... ..-....+.+.+++ +|++.... ....|++.++.+...+.|.... ......++.|..
T Consensus 168 ~~~l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~-~~~~Iyv~dl~tg~~~~lt~~~-g~~~~~~~SPDG 244 (419)
T PRK04043 168 KSNIVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGE-RKPTLYKYNLYTGKKEKIASSQ-GMLVVSDVSKDG 244 (419)
T ss_pred cceEEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccC-CCCEEEEEECCCCcEEEEecCC-CcEEeeEECCCC
Confidence 4578888888754 434333 33345666777664 77665521 2468999999887777766422 222345677767
Q ss_pred CcEEEEcc-CCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEc--CCCCcEEEEeCCCCceeEEEecCCCC
Q psy6570 84 GRMFWTEL-GIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWAD--PKARTIESINLNGKDRFVVYHTEDNG 160 (713)
Q Consensus 84 ~~ly~td~-~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d--~~~~~I~~~~~~g~~~~~~~~~~~~~ 160 (713)
++|+++.. ..++.|+.+++++...+.|..... .-....+.|++++||++. .+...|+++++++...+.+.....
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-- 321 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-- 321 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--
Confidence 67776543 334589999998887666643221 123457888888888875 344589999999877654443221
Q ss_pred ccceeeeeeCCeEEEEeCCC--------CcEEEEcccCCC
Q psy6570 161 YKPYKLEVFEDNLYFSTYRT--------NNILKINKFGNS 192 (713)
Q Consensus 161 ~~p~~i~~~~~~ly~td~~~--------~~i~~~~~~~~~ 192 (713)
.. ..++.++++|.++.... ..|+.++..++.
T Consensus 322 ~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 322 NN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred cC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 12 25666677776664332 356666655443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0058 Score=66.94 Aligned_cols=180 Identities=13% Similarity=0.080 Sum_probs=109.1
Q ss_pred ceeEEEccCcc-cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcE
Q psy6570 8 NVTRVKREMNL-KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRM 86 (713)
Q Consensus 8 ~I~~~~~~~~~-~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~l 86 (713)
+|..++.++.. +.+.........+++.+.+++|+++.... ....|++.++++...+.+.... ......++.|..++|
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~-~~~~l~~~~l~~g~~~~l~~~~-g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQ-KRPRIFVQNLDTGRREQITNFE-GLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCC-CCCEEEEEECCCCCEEEccCCC-CCcCCeEECCCCCEE
Confidence 46666777644 33333333346678888888886654311 3457999999876666554322 233467888877788
Q ss_pred EEEcc-CCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcC--CCCcEEEEeCCCCceeEEEecCCCCccc
Q psy6570 87 FWTEL-GIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADP--KARTIESINLNGKDRFVVYHTEDNGYKP 163 (713)
Q Consensus 87 y~td~-~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~--~~~~I~~~~~~g~~~~~~~~~~~~~~~p 163 (713)
+++-. .....|++.++++...+.+.. ........++++++++||++.. +...|+++++++...+.+..... ....
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~-~~~~ 335 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSRVTN-HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGN-YNAR 335 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEEccc-CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC-Cccc
Confidence 77543 333489999999877665543 2223456788888888877642 34579999987766554432211 1122
Q ss_pred eeeeeeCCeEEEEeCCCC--cEEEEcccCC
Q psy6570 164 YKLEVFEDNLYFSTYRTN--NILKINKFGN 191 (713)
Q Consensus 164 ~~i~~~~~~ly~td~~~~--~i~~~~~~~~ 191 (713)
..+..++++|+++....+ .|+.++..++
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence 334556777877754332 3666665544
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.003 Score=67.89 Aligned_cols=111 Identities=14% Similarity=0.205 Sum_probs=70.4
Q ss_pred EEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEE------e-CCCCCCeeEEEeCC------CCeEE
Q psy6570 65 TLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLV------D-NNIQWPTGITIDYP------SQRLY 131 (713)
Q Consensus 65 ~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~------~-~~~~~p~glavd~~------~~~LY 131 (713)
.++..+|..|++|++.| +++||+++.... +|++++.++...+.++ . .....+.||||+|. +++||
T Consensus 23 ~~va~GL~~Pw~maflP-DG~llVtER~~G-~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lY 100 (454)
T TIGR03606 23 KVLLSGLNKPWALLWGP-DNQLWVTERATG-KILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVY 100 (454)
T ss_pred EEEECCCCCceEEEEcC-CCeEEEEEecCC-EEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEE
Confidence 34557899999999997 679999996434 8988876654333222 1 13456789999965 45799
Q ss_pred EEcC---------CCCcEEEEeCCCC-----ceeEEEecC--CCCccceeeeee-CCeEEEEe
Q psy6570 132 WADP---------KARTIESINLNGK-----DRFVVYHTE--DNGYKPYKLEVF-EDNLYFST 177 (713)
Q Consensus 132 ~~d~---------~~~~I~~~~~~g~-----~~~~~~~~~--~~~~~p~~i~~~-~~~ly~td 177 (713)
++-+ ...+|.|+.++.. ..++++... ...+..-.|.+. +++||++-
T Consensus 101 vsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~ 163 (454)
T TIGR03606 101 ISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTI 163 (454)
T ss_pred EEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEE
Confidence 8842 2468999887632 233444321 112334455554 56899964
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins | Back alignment and domain information |
|---|
Probab=97.60 E-value=4.5e-05 Score=52.68 Aligned_cols=32 Identities=25% Similarity=0.708 Sum_probs=28.8
Q ss_pred ccCCCCCC--CCCCCCeeeccCCCceeeeCCCCc
Q psy6570 219 VTNHCDDK--PCHQSALCINLPSSHTCLCPDHLT 250 (713)
Q Consensus 219 ~~~~C~~~--~C~~~~~C~~~~g~~~C~C~~G~~ 250 (713)
.+|||+.. +|..++.|+|++|+|+|.|++||.
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence 36899875 598899999999999999999998
|
Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A .... |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0033 Score=66.75 Aligned_cols=148 Identities=16% Similarity=0.154 Sum_probs=92.6
Q ss_pred cCCceeEEEccCcccEE-ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCce-EEEEEcCCC------CCcce
Q psy6570 5 SSGNVTRVKREMNLKTV-LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK-KRTLLNTGL------NEPYD 76 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~~~-~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~-~~~l~~~~~------~~p~~ 76 (713)
.++.|..+|+...+.+- +.....|.++++.+.++.||+++. ..+.|.++|..... .+.+-..++ .++.+
T Consensus 56 rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~---~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~a 132 (369)
T PF02239_consen 56 RDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANY---EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAA 132 (369)
T ss_dssp TTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEE---ETTEEEEEETTT--EEEEEE--EE-TTTS---EEE
T ss_pred CCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEec---CCCceeEeccccccceeecccccccccccCCCcee
Confidence 35788888888754322 566778999999999999999998 78899999876543 333322211 23446
Q ss_pred EEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEE-EeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEe
Q psy6570 77 IALEPLSGRMFWTELGIKPRISGASIDGKNKFNL-VDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYH 155 (713)
Q Consensus 77 iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l-~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~ 155 (713)
|...+.+..++++-.... +|+.++........+ ....-..|.++.+|+...++|++....+.|..++........+..
T Consensus 133 Iv~s~~~~~fVv~lkd~~-~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 133 IVASPGRPEFVVNLKDTG-EIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp EEE-SSSSEEEEEETTTT-EEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred EEecCCCCEEEEEEccCC-eEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence 666654444444444444 999998765433222 222346799999999888888888788899999987665554443
Q ss_pred c
Q psy6570 156 T 156 (713)
Q Consensus 156 ~ 156 (713)
.
T Consensus 212 ~ 212 (369)
T PF02239_consen 212 T 212 (369)
T ss_dssp -
T ss_pred c
Confidence 3
|
... |
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0015 Score=68.36 Aligned_cols=160 Identities=17% Similarity=0.233 Sum_probs=101.3
Q ss_pred CCceEEEeccCCeEEEeecCC----------CCCCeEEEEec--------CCceEEEEEcCCCCCcceEEEcCCCCcEEE
Q psy6570 27 DPRGVAVDWVGKNLYWTDAGG----------RSSNNIMVSTL--------EGRKKRTLLNTGLNEPYDIALEPLSGRMFW 88 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~td~~~----------~~~~~I~~~~~--------~G~~~~~l~~~~~~~p~~iavD~~~~~ly~ 88 (713)
.-.-|++++.+ +||++=... ...++|.+.+. ++... .+...++..|.||+++|.++.||.
T Consensus 178 ~g~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~-~i~s~G~RN~qGl~w~P~tg~Lw~ 255 (399)
T COG2133 178 FGGRLVFGPDG-KLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNS-EIWSYGHRNPQGLAWHPVTGALWT 255 (399)
T ss_pred CcccEEECCCC-cEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCc-ceEEeccCCccceeecCCCCcEEE
Confidence 34679999886 999985432 11244444443 34332 345567899999999999999999
Q ss_pred EccCCC---C--eEEEE---------------ecCC------CCcEEEEe-----CCCCCCeeEEEeCCC------CeEE
Q psy6570 89 TELGIK---P--RISGA---------------SIDG------KNKFNLVD-----NNIQWPTGITIDYPS------QRLY 131 (713)
Q Consensus 89 td~~~~---~--~I~~~---------------~~dG------~~~~~l~~-----~~~~~p~glavd~~~------~~LY 131 (713)
++.+.. + .|.++ ..+| .....+.. ...-.|.||+|-.-+ +.||
T Consensus 256 ~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lf 335 (399)
T COG2133 256 TEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLF 335 (399)
T ss_pred EecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEE
Confidence 997762 0 01111 1111 11111111 112346899987322 6899
Q ss_pred EEcCCCCcEEEEeCCCCceeE---EEecCCCCccceeeeee-CCeEEEEeCC-CCcEEEEccc
Q psy6570 132 WADPKARTIESINLNGKDRFV---VYHTEDNGYKPYKLEVF-EDNLYFSTYR-TNNILKINKF 189 (713)
Q Consensus 132 ~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~~~p~~i~~~-~~~ly~td~~-~~~i~~~~~~ 189 (713)
++......+.+++.+|..+.. ++.. .....|.+|.+. ++.||+++.. +++|+|+...
T Consensus 336 V~~hgsw~~~~~~~~g~~~~~~~~fl~~-d~~gR~~dV~v~~DGallv~~D~~~g~i~Rv~~~ 397 (399)
T COG2133 336 VGAHGSWPVLRLRPDGNYKVVLTGFLSG-DLGGRPRDVAVAPDGALLVLTDQGDGRILRVSYA 397 (399)
T ss_pred EEeecceeEEEeccCCCcceEEEEEEec-CCCCcccceEECCCCeEEEeecCCCCeEEEecCC
Confidence 999888888889999984333 3332 223688888876 6789998766 6699999764
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.01 Score=64.74 Aligned_cols=168 Identities=15% Similarity=0.101 Sum_probs=104.0
Q ss_pred CceeEEEccCccc-EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCc
Q psy6570 7 GNVTRVKREMNLK-TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGR 85 (713)
Q Consensus 7 ~~I~~~~~~~~~~-~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ 85 (713)
..|+.+++.+... .+...-.....+++.+.++.||++.... ....|++.++++...+.+.... ......++.+..++
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~-~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~s~dg~~ 291 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKD-GNPDIYVMDLDGKQLTRLTNGP-GIDTEPSWSPDGKS 291 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCC-CCccEEEEECCCCCEEECCCCC-CCCCCEEECCCCCE
Confidence 4677777775433 2322223345678888878888765411 3457999999876655554322 22334567776677
Q ss_pred EEEE-ccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCC--CcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 86 MFWT-ELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKA--RTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 86 ly~t-d~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~--~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
|+|+ +......|+++++++...+.+.. .......+++++.+++|+++.... .+|+.+++++...+.+..... ...
T Consensus 292 l~~~s~~~g~~~iy~~d~~~~~~~~l~~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~ 369 (417)
T TIGR02800 292 IAFTSDRGGSPQIYMMDADGGEVRRLTF-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGL-DES 369 (417)
T ss_pred EEEEECCCCCceEEEEECCCCCEEEeec-CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCC-CCC
Confidence 7665 43334589999998876555543 334456788998888999987543 478999988766555543211 112
Q ss_pred ceeeeeeCCeEEEEeCC
Q psy6570 163 PYKLEVFEDNLYFSTYR 179 (713)
Q Consensus 163 p~~i~~~~~~ly~td~~ 179 (713)
..++.++..|+++...
T Consensus 370 -p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 370 -PSFAPNGRMILYATTR 385 (417)
T ss_pred -ceECCCCCEEEEEEeC
Confidence 2445567777776544
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0095 Score=65.26 Aligned_cols=179 Identities=12% Similarity=0.103 Sum_probs=108.8
Q ss_pred CceeEEEccCcccEEecCCC-CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCc
Q psy6570 7 GNVTRVKREMNLKTVLSNLH-DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGR 85 (713)
Q Consensus 7 ~~I~~~~~~~~~~~~~~~~~-~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ 85 (713)
..|+++++++.....+.... ....+++.+.+++|+++-... ....|+++++++...+.+.... ......++.|..+.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~-g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~~spDg~~ 300 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKD-GNPEIYVMDLASRQLSRVTNHP-AIDTEPFWGKDGRT 300 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccC-CCceEEEEECCCCCeEEcccCC-CCcCCeEECCCCCE
Confidence 45777777754433322222 233577888888887764311 3457999999887766554322 33445677777777
Q ss_pred EEEEc-cCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCC--CcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 86 MFWTE-LGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKA--RTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 86 ly~td-~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~--~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
||++. ....+.|+++++++...+.+... .......++++++++|+++.... ..|+.+++++...+.+..... ...
T Consensus 301 i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~-~~~ 378 (430)
T PRK00178 301 LYFTSDRGGKPQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSL-DES 378 (430)
T ss_pred EEEEECCCCCceEEEEECCCCCEEEeecC-CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCC-CCC
Confidence 76654 33345899999887665555422 22334568888899998886433 368899988876665543211 122
Q ss_pred ceeeeeeCCeEEEEeCCC--CcEEEEcccC
Q psy6570 163 PYKLEVFEDNLYFSTYRT--NNILKINKFG 190 (713)
Q Consensus 163 p~~i~~~~~~ly~td~~~--~~i~~~~~~~ 190 (713)
| .++.++..|+++.... ..|+.++..+
T Consensus 379 p-~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 379 P-SVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred c-eECCCCCEEEEEEecCCceEEEEEECCC
Confidence 3 4555667777775432 3466666543
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.016 Score=58.28 Aligned_cols=183 Identities=11% Similarity=-0.009 Sum_probs=104.9
Q ss_pred CCceeEEEccCcc--cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCC
Q psy6570 6 SGNVTRVKREMNL--KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLS 83 (713)
Q Consensus 6 ~~~I~~~~~~~~~--~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~ 83 (713)
++.|...+..... ..+......+..+++.+. +.++++.. ..+.|.+.++........+......+..+++++.+
T Consensus 72 ~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 147 (289)
T cd00200 72 DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD-GRILSSSS---RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG 147 (289)
T ss_pred CCeEEEEEcCcccceEEEeccCCcEEEEEEcCC-CCEEEEec---CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcC
Confidence 5666666666532 122222335677888765 45555554 46789999987433333333333568899999875
Q ss_pred CcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccc
Q psy6570 84 GRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKP 163 (713)
Q Consensus 84 ~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p 163 (713)
.+|+... ... .|...++........+.........|++++.+..|+++.. .+.|..+++........... .....
T Consensus 148 ~~l~~~~-~~~-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~--~~~~i 222 (289)
T cd00200 148 TFVASSS-QDG-TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLRG--HENGV 222 (289)
T ss_pred CEEEEEc-CCC-cEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCceecchhh--cCCce
Confidence 5555544 223 6777777644333333333446788999977767777765 67788888765332222211 12234
Q ss_pred eeeeeeC-CeEEEEeCCCCcEEEEcccCCCcceee
Q psy6570 164 YKLEVFE-DNLYFSTYRTNNILKINKFGNSDFNVL 197 (713)
Q Consensus 164 ~~i~~~~-~~ly~td~~~~~i~~~~~~~~~~~~~~ 197 (713)
..+.+.. +.++++....+.|..++...+.....+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~ 257 (289)
T cd00200 223 NSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL 257 (289)
T ss_pred EEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc
Confidence 5566554 455555544677777776544433333
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.011 Score=64.47 Aligned_cols=178 Identities=12% Similarity=0.091 Sum_probs=105.2
Q ss_pred CceeEEEccCcccEEecCC-CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCc
Q psy6570 7 GNVTRVKREMNLKTVLSNL-HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGR 85 (713)
Q Consensus 7 ~~I~~~~~~~~~~~~~~~~-~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ 85 (713)
..|+.+++.+.....+... .....+++.+.+++|+++-.. .....|+++++++...+.+.... ......++.|..++
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~-~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~ 297 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSR-DGNSQIYTVNADGSGLRRLTQSS-GIDTEPFFSPDGRS 297 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEcc-CCCceEEEEECCCCCcEECCCCC-CCCcCeEEcCCCCE
Confidence 4577888776543333322 234567888888888775331 13467999998877665554322 23345678877777
Q ss_pred EEEE-ccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCC--CcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 86 MFWT-ELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKA--RTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 86 ly~t-d~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~--~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
|+++ +......|+++++++...+.+.... ......++++++++|+++.... ..|+.+++++...+.+.... ...
T Consensus 298 l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~--~~~ 374 (427)
T PRK02889 298 IYFTSDRGGAPQIYRMPASGGAAQRVTFTG-SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT--RDE 374 (427)
T ss_pred EEEEecCCCCcEEEEEECCCCceEEEecCC-CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC--Ccc
Confidence 7665 4334458999998876655544222 2234578998888988875433 36899998776655554321 112
Q ss_pred ceeeeeeCCeEEEEeCCC--CcEEEEccc
Q psy6570 163 PYKLEVFEDNLYFSTYRT--NNILKINKF 189 (713)
Q Consensus 163 p~~i~~~~~~ly~td~~~--~~i~~~~~~ 189 (713)
...++.++..|+++.... ..++.++..
T Consensus 375 ~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 375 SPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred CceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 223444566666654322 224455543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.01 Score=64.71 Aligned_cols=181 Identities=13% Similarity=0.041 Sum_probs=107.4
Q ss_pred CCceeEEEccCcc-cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCC
Q psy6570 6 SGNVTRVKREMNL-KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSG 84 (713)
Q Consensus 6 ~~~I~~~~~~~~~-~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~ 84 (713)
...|+.++.++.. +.+...-.....+++.+.++.|+|+.... ....|++.++++...+.+.... .....+++.|..+
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~-~~~~i~v~d~~~g~~~~~~~~~-~~~~~~~~spDg~ 246 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFES-GKPEIYVQDLATGQREKVASFP-GMNGAPAFSPDGS 246 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCC-CCcEEEEEECCCCCEEEeecCC-CCccceEECCCCC
Confidence 3457777776543 33333222345567888888888876522 2367999998765544443221 3345688888777
Q ss_pred cEEEEccC-CCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcC--CCCcEEEEeCCCCceeEEEecCCCCc
Q psy6570 85 RMFWTELG-IKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADP--KARTIESINLNGKDRFVVYHTEDNGY 161 (713)
Q Consensus 85 ~ly~td~~-~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~--~~~~I~~~~~~g~~~~~~~~~~~~~~ 161 (713)
.||++... ....|+..++++...+.+... .......++.+++++|+++.. ....|+.+++++...+.+..... ..
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~-~~ 324 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNG-PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGG-YN 324 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCC-CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC-Cc
Confidence 78776432 334799999987665555432 122335677877888877642 34579999998776555543221 11
Q ss_pred cceeeeeeCCeEEEEeCCC--CcEEEEcccC
Q psy6570 162 KPYKLEVFEDNLYFSTYRT--NNILKINKFG 190 (713)
Q Consensus 162 ~p~~i~~~~~~ly~td~~~--~~i~~~~~~~ 190 (713)
....+..++.+|+++.... ..|+.++..+
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 1223344566777776543 3566666544
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins | Back alignment and domain information |
|---|
Probab=97.53 E-value=5.7e-05 Score=48.51 Aligned_cols=30 Identities=40% Similarity=1.031 Sum_probs=27.0
Q ss_pred CCCCCCCCCCeeeccC-CCceeeeCCCCccc
Q psy6570 223 CDDKPCHQSALCINLP-SSHTCLCPDHLTEE 252 (713)
Q Consensus 223 C~~~~C~~~~~C~~~~-g~~~C~C~~G~~~~ 252 (713)
|..+||.++++|++.. ++|+|.|++||+|.
T Consensus 1 C~~~~C~n~g~C~~~~~~~y~C~C~~G~~G~ 31 (32)
T PF00008_consen 1 CSSNPCQNGGTCIDLPGGGYTCECPPGYTGK 31 (32)
T ss_dssp TTTTSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred CCCCcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence 5677999999999999 89999999999863
|
The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A .... |
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00021 Score=44.37 Aligned_cols=28 Identities=21% Similarity=0.604 Sum_probs=25.2
Q ss_pred CCCCeeEEEeCCCCeEEEEcCCCCcEEEE
Q psy6570 115 IQWPTGITIDYPSQRLYWADPKARTIESI 143 (713)
Q Consensus 115 ~~~p~glavd~~~~~LY~~d~~~~~I~~~ 143 (713)
+..|.|||+| .++.||++|.++++|+++
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 4679999999 789999999999999875
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >smart00179 EGF_CA Calcium-binding EGF-like domain | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0002 Score=48.62 Aligned_cols=36 Identities=42% Similarity=1.038 Sum_probs=26.3
Q ss_pred CCCCCC-CCCCCCcEEeecCCCceeeCCCCCc-CCCCC
Q psy6570 552 ANKCTP-NYCSNNGTCVLIEGKPSCKCLPPYS-GKQCT 587 (713)
Q Consensus 552 ~~~C~~-~~C~~~~~C~~~~g~~~C~C~~G~~-G~~C~ 587 (713)
+++|.. .+|.++++|++..++|.|.|++||. |..|+
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~~g~~C~ 39 (39)
T smart00179 2 IDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39 (39)
T ss_pred cccCcCCCCcCCCCEeECCCCCeEeECCCCCccCCcCC
Confidence 345665 5677777888888888888888887 76663
|
|
| >PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium | Back alignment and domain information |
|---|
Probab=97.43 E-value=3.4e-05 Score=69.72 Aligned_cols=128 Identities=26% Similarity=0.594 Sum_probs=75.2
Q ss_pred CCCCCeeecCCCCCCeeecCCCcc---cCCccccC-CC-----CCCCCCCceeeCCCC-CCCCCceeeCCCCcc--cCCC
Q psy6570 315 DCNHGTCEFDDDFDPHCICQENFY---GTYCEKVN-NS-----MCPCLNQGMCYPDLT-HPEPTYKCHCAPSYT--GARC 382 (713)
Q Consensus 315 ~C~~~~C~~~~~~~~~C~C~~g~~---G~~C~~~~-c~-----~~~C~~~~~C~~~~~-~~~~~~~C~C~~G~~--g~~C 382 (713)
.|.||..+....- |.|.|++||. -++||... |. ..+|..-+.|..... ..+..|.|.|.+||. ...|
T Consensus 7 ~CKNG~LiQMSNH-fEC~Cnegfvl~~EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~vC 85 (197)
T PF06247_consen 7 ICKNGYLIQMSNH-FECKCNEGFVLKNENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQGVC 85 (197)
T ss_dssp --BTEEEEEESSE-EEEEESTTEEEEETTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSSSE
T ss_pred cccCCEEEEccCc-eEEEcCCCcEEccccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCCeE
Confidence 3666666654333 7999999997 35676533 43 347888899987654 345689999999998 4467
Q ss_pred CccCCC-CCCCCCCEEEc-----CCCeeeCCCCCcc---CCCC-----cCCCCCCCCCcEeccCCCCccccCCCCCc
Q psy6570 383 ESRICE-NKCHNGGTCIA-----TTQTCVCPPGFTG---DTCQ-----QCLNLKCQNGGVCVNKTTGLECDCPKFYY 445 (713)
Q Consensus 383 ~~~~C~-~~C~~~~~C~~-----~~~~C~C~~g~~g---~~C~-----~C~~~~C~~~~~C~~~~~~~~C~C~~G~~ 445 (713)
.+..|. ..|. .|.|+. ....|+|.-|+.- ..|. +|... |..+..|....+-|+|.|.+||.
T Consensus 86 vp~~C~~~~Cg-~GKCI~d~~~~~~~~CSC~IGkV~~dn~kCtk~G~T~C~LK-Ck~nE~CK~~~~~Y~C~~~~~~~ 160 (197)
T PF06247_consen 86 VPNKCNNKDCG-SGKCILDPDNPNNPTCSCNIGKVPDDNKKCTKTGETKCSLK-CKENEECKLVDGYYKCVCKEGFP 160 (197)
T ss_dssp EEGGGSS---T-TEEEEEEEGGGSEEEEEE-TEEETTTTTESEEEE---------TTTEEEEEETTEEEEEE-TT-E
T ss_pred chhhcCceecC-CCeEEecCCCCCCceeEeeeceEeccCCcccCCCccceeee-cCCCcceeeeCcEEEeecCCCCC
Confidence 776776 4576 689986 2348999999871 1232 33322 55556666666666666666664
|
Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.025 Score=61.58 Aligned_cols=185 Identities=14% Similarity=0.131 Sum_probs=104.0
Q ss_pred CceeEEEccCccc-EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEE--ecCC---ceEEEEEcCCCCCcceEEEc
Q psy6570 7 GNVTRVKREMNLK-TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVS--TLEG---RKKRTLLNTGLNEPYDIALE 80 (713)
Q Consensus 7 ~~I~~~~~~~~~~-~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~--~~~G---~~~~~l~~~~~~~p~~iavD 80 (713)
..|+.+++++... .+...-......++.+.+++|+++-... ....|++. ++++ ...+.+...........++.
T Consensus 211 ~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~-g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS 289 (428)
T PRK01029 211 PKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRY-GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS 289 (428)
T ss_pred ceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCC-CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC
Confidence 4678888876543 3333223344577888888888765311 22345543 4332 23334443322334467888
Q ss_pred CCCCcEEEEc-cCCCCeEEEEecCCCC-cEEEEeCCCCCCeeEEEeCCCCeEEEEcC--CCCcEEEEeCCCCceeEEEec
Q psy6570 81 PLSGRMFWTE-LGIKPRISGASIDGKN-KFNLVDNNIQWPTGITIDYPSQRLYWADP--KARTIESINLNGKDRFVVYHT 156 (713)
Q Consensus 81 ~~~~~ly~td-~~~~~~I~~~~~dG~~-~~~l~~~~~~~p~glavd~~~~~LY~~d~--~~~~I~~~~~~g~~~~~~~~~ 156 (713)
|....|+|+. .....+|+++++++.. ....+..........++.|++++|+++.. +...|+.+++++...+.+...
T Consensus 290 PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~ 369 (428)
T PRK01029 290 PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS 369 (428)
T ss_pred CCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC
Confidence 8777676654 4444589999886432 22222222234456789999998888753 345799999988777666533
Q ss_pred CCCCccceeeeeeCCeEEEEeC--CCCcEEEEcccCCCc
Q psy6570 157 EDNGYKPYKLEVFEDNLYFSTY--RTNNILKINKFGNSD 193 (713)
Q Consensus 157 ~~~~~~p~~i~~~~~~ly~td~--~~~~i~~~~~~~~~~ 193 (713)
.... .....+.++..|+++.. ....|+.++..++..
T Consensus 370 ~~~~-~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 370 PENK-ESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred CCCc-cceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 2111 11223334566766532 345577777665543
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.007 Score=59.55 Aligned_cols=131 Identities=17% Similarity=0.211 Sum_probs=83.2
Q ss_pred CCceeEEEccCcccEE-ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCc-eEEEE-Ec-C--CCCCcceEEE
Q psy6570 6 SGNVTRVKREMNLKTV-LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR-KKRTL-LN-T--GLNEPYDIAL 79 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~-~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~-~~~~l-~~-~--~~~~p~~iav 79 (713)
++..+.+++++-+.+- .+-..+..||+.| +.+||.+|. ..+|+..+++.- ..+.+ +. . .+...+-|..
T Consensus 109 ~~~~f~yd~~tl~~~~~~~y~~EGWGLt~d--g~~Li~SDG----S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~ 182 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIGTFPYPGEGWGLTSD--GKRLIMSDG----SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY 182 (264)
T ss_dssp SSEEEEEETTTTEEEEEEE-SSS--EEEEC--SSCEEEE-S----SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE
T ss_pred CCeEEEEccccceEEEEEecCCcceEEEcC--CCEEEEECC----ccceEEECCcccceEEEEEEEECCEECCCcEeEEE
Confidence 4566677776533222 4445688999976 678999996 688999987642 22222 22 1 1455666777
Q ss_pred cCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeC---------------CCCCCeeEEEeCCCCeEEEEcCCCCcEEEEe
Q psy6570 80 EPLSGRMFWTELGIKPRISGASIDGKNKFNLVDN---------------NIQWPTGITIDYPSQRLYWADPKARTIESIN 144 (713)
Q Consensus 80 D~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~---------------~~~~p~glavd~~~~~LY~~d~~~~~I~~~~ 144 (713)
.+|.||---|..+ +|.++++........+.. ....-+|||.|+..++||++-..-.+++.+.
T Consensus 183 --i~G~IyANVW~td-~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~ 259 (264)
T PF05096_consen 183 --INGKIYANVWQTD-RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVK 259 (264)
T ss_dssp --ETTEEEEEETTSS-EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEE
T ss_pred --EcCEEEEEeCCCC-eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEE
Confidence 5788887777777 999999987666555531 1234699999999999999998888888876
Q ss_pred C
Q psy6570 145 L 145 (713)
Q Consensus 145 ~ 145 (713)
+
T Consensus 260 l 260 (264)
T PF05096_consen 260 L 260 (264)
T ss_dssp E
T ss_pred E
Confidence 5
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.011 Score=64.96 Aligned_cols=184 Identities=14% Similarity=0.105 Sum_probs=108.6
Q ss_pred cccCCceeEEEccCcc---cEEecCCCCCceEEEe--ccCCeEEEeecCC--------------CCCCeEEEEecCCceE
Q psy6570 3 SISSGNVTRVKREMNL---KTVLSNLHDPRGVAVD--WVGKNLYWTDAGG--------------RSSNNIMVSTLEGRKK 63 (713)
Q Consensus 3 d~~~~~I~~~~~~~~~---~~~~~~~~~p~gla~D--~~~~~ly~td~~~--------------~~~~~I~~~~~~G~~~ 63 (713)
|-.+.||-||+++.-+ .+.++.....+|+++. +.++.+|-.-... +..+.+.++|.+...+
T Consensus 148 dk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV 227 (635)
T PRK02888 148 DKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEV 227 (635)
T ss_pred cCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceE
Confidence 4568899999988733 2236777778888887 4444444221100 0234455555553222
Q ss_pred E-EEEcCCCCCcceEEEcCCCCcEEEEccCC---C----------CeEEEEe-----------------------cCCCC
Q psy6570 64 R-TLLNTGLNEPYDIALEPLSGRMFWTELGI---K----------PRISGAS-----------------------IDGKN 106 (713)
Q Consensus 64 ~-~l~~~~~~~p~~iavD~~~~~ly~td~~~---~----------~~I~~~~-----------------------~dG~~ 106 (713)
. ++. .+ .+|..+++++.++++|++..+. . ..+..++ +|+..
T Consensus 228 ~~qV~-Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t 305 (635)
T PRK02888 228 AWQVM-VD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRK 305 (635)
T ss_pred EEEEE-eC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCc
Confidence 1 222 12 4899999999888999985221 0 0111111 11221
Q ss_pred -----cEEEE-eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCc---------eeEEEecCCCCccceeeeeeC-
Q psy6570 107 -----KFNLV-DNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKD---------RFVVYHTEDNGYKPYKLEVFE- 170 (713)
Q Consensus 107 -----~~~l~-~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~---------~~~~~~~~~~~~~p~~i~~~~- 170 (713)
...+. ..--+.|.||+++|++++||++...++.|..+++.... +..+.........|+-.++++
T Consensus 306 ~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~ 385 (635)
T PRK02888 306 AANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGR 385 (635)
T ss_pred cccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCC
Confidence 11111 11235799999999999999999999999999976532 222333222245777777774
Q ss_pred CeEEEEeCCCCcEEEEcc
Q psy6570 171 DNLYFSTYRTNNILKINK 188 (713)
Q Consensus 171 ~~ly~td~~~~~i~~~~~ 188 (713)
++.|.+-.....|.+++.
T Consensus 386 G~aytslf~dsqv~kwn~ 403 (635)
T PRK02888 386 GNAYTTLFLDSQIVKWNI 403 (635)
T ss_pred CCEEEeEeecceeEEEeh
Confidence 478887666666766664
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.018 Score=62.97 Aligned_cols=176 Identities=12% Similarity=0.069 Sum_probs=108.3
Q ss_pred CceeEEEccCccc-EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCc
Q psy6570 7 GNVTRVKREMNLK-TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGR 85 (713)
Q Consensus 7 ~~I~~~~~~~~~~-~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ 85 (713)
.+|+..+.++... .+.........+++.+.+++|+++.... ....|++.++++...+.+.... ..-..+++.|...+
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~-~~~~i~i~dl~tg~~~~l~~~~-g~~~~~~wSPDG~~ 261 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFEN-KKSQLVVHDLRSGARKVVASFR-GHNGAPAFSPDGSR 261 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecC-CCcEEEEEeCCCCceEEEecCC-CccCceeECCCCCE
Confidence 4566667776433 3333333457788999888887765421 2457999998876555444221 22346788887777
Q ss_pred EEEEc-cCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEc--CCCCcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 86 MFWTE-LGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWAD--PKARTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 86 ly~td-~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d--~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
|+++. ......|+..++++...+.+.. .......+++++++.+|+++- .+..+|+.++.++...+.+ ... . .
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~--~-~ 336 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGTPSQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR--G-Y 336 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCCeEeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC--C-C
Confidence 88864 2333478999998776666543 223356789998888777663 2456899998887766554 221 1 2
Q ss_pred ceeeeeeCCeEEEEeCCCCcEEEEcccCC
Q psy6570 163 PYKLEVFEDNLYFSTYRTNNILKINKFGN 191 (713)
Q Consensus 163 p~~i~~~~~~ly~td~~~~~i~~~~~~~~ 191 (713)
...+..++.+|+.+.. ..|++++..++
T Consensus 337 ~~~~SpDG~~ia~~~~--~~i~~~Dl~~g 363 (429)
T PRK01742 337 SAQISADGKTLVMING--DNVVKQDLTSG 363 (429)
T ss_pred CccCCCCCCEEEEEcC--CCEEEEECCCC
Confidence 2234455667766543 45666665444
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.03 Score=55.20 Aligned_cols=161 Identities=13% Similarity=0.062 Sum_probs=99.6
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceE-EEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCC
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKK-RTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKN 106 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~-~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~ 106 (713)
-+||.++ .++.||-+-. ..+..+|.++++++... +..--..-.--.||++- ++.||.-.|..+ ..++.+++.-.
T Consensus 47 TQGL~~~-~~g~LyESTG-~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~-~~f~yd~~tl~ 121 (264)
T PF05096_consen 47 TQGLEFL-DDGTLYESTG-LYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEG-TGFVYDPNTLK 121 (264)
T ss_dssp EEEEEEE-ETTEEEEEEC-STTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSS-EEEEEETTTTE
T ss_pred CccEEec-CCCEEEEeCC-CCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCC-eEEEEccccce
Confidence 4789885 3578997765 22345799999886443 23222333456789984 789999999887 88888887432
Q ss_pred cEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCc-eeEEEec--CCCCccceeeeeeCCeEEEEeCCCCcE
Q psy6570 107 KFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKD-RFVVYHT--EDNGYKPYKLEVFEDNLYFSTYRTNNI 183 (713)
Q Consensus 107 ~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~-~~~~~~~--~~~~~~p~~i~~~~~~ly~td~~~~~i 183 (713)
...-+.- .....||+-| ++.||.+|. +.+|+..+...-. ...+... ...+..-.-|.+.++.||---|.++.|
T Consensus 122 ~~~~~~y-~~EGWGLt~d--g~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I 197 (264)
T PF05096_consen 122 KIGTFPY-PGEGWGLTSD--GKRLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRI 197 (264)
T ss_dssp EEEEEE--SSS--EEEEC--SSCEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEE
T ss_pred EEEEEec-CCcceEEEcC--CCEEEEECC-ccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeE
Confidence 2222221 2356899977 788999994 7889998876432 2222211 111222234666788888888999999
Q ss_pred EEEcccCCCcceee
Q psy6570 184 LKINKFGNSDFNVL 197 (713)
Q Consensus 184 ~~~~~~~~~~~~~~ 197 (713)
.++++.++.....+
T Consensus 198 ~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 198 VRIDPETGKVVGWI 211 (264)
T ss_dssp EEEETTT-BEEEEE
T ss_pred EEEeCCCCeEEEEE
Confidence 99999887665554
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.037 Score=60.33 Aligned_cols=183 Identities=10% Similarity=0.048 Sum_probs=102.3
Q ss_pred CCceeEEEccCccc-EEecCCCCCceEEEeccCCe---EEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcC
Q psy6570 6 SGNVTRVKREMNLK-TVLSNLHDPRGVAVDWVGKN---LYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEP 81 (713)
Q Consensus 6 ~~~I~~~~~~~~~~-~~~~~~~~p~gla~D~~~~~---ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~ 81 (713)
..+|+.++.+|... .+..........++.+.++. +|++... ....|++.+++|...+.|.... ......++.|
T Consensus 164 ~~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~--g~~~I~~~~l~~g~~~~lt~~~-g~~~~p~wSP 240 (428)
T PRK01029 164 QGELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKL--GVPKIFLGSLENPAGKKILALQ-GNQLMPTFSP 240 (428)
T ss_pred cceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccC--CCceEEEEECCCCCceEeecCC-CCccceEECC
Confidence 45788888887543 33222222234467776654 4566542 3568999999988777665432 3344578888
Q ss_pred CCCcEEEEccC-CCCeEEEE--ecCC---CCcEEEEeCCCCCCeeEEEeCCCCeEEEEcC--CCCcEEEEeCCCC--cee
Q psy6570 82 LSGRMFWTELG-IKPRISGA--SIDG---KNKFNLVDNNIQWPTGITIDYPSQRLYWADP--KARTIESINLNGK--DRF 151 (713)
Q Consensus 82 ~~~~ly~td~~-~~~~I~~~--~~dG---~~~~~l~~~~~~~p~glavd~~~~~LY~~d~--~~~~I~~~~~~g~--~~~ 151 (713)
...+|.|+... ....|+.. ++++ ...+.+...........+++|++++|+++.. +..+|+.+++++. ..+
T Consensus 241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~ 320 (428)
T PRK01029 241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR 320 (428)
T ss_pred CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE
Confidence 77788776532 23356664 3332 2333444333333456799998887777642 3457999888642 233
Q ss_pred EEEecCCCCccceeeeeeCCeEEEEeCC--CCcEEEEcccCCC
Q psy6570 152 VVYHTEDNGYKPYKLEVFEDNLYFSTYR--TNNILKINKFGNS 192 (713)
Q Consensus 152 ~~~~~~~~~~~p~~i~~~~~~ly~td~~--~~~i~~~~~~~~~ 192 (713)
.+..... .........++++|+++... ...|+.++..++.
T Consensus 321 ~lt~~~~-~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~ 362 (428)
T PRK01029 321 LLTKKYR-NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR 362 (428)
T ss_pred EeccCCC-CccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 3322211 11122344556677666432 2356677665543
|
|
| >PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00017 Score=49.80 Aligned_cols=31 Identities=45% Similarity=1.023 Sum_probs=23.9
Q ss_pred CCCCCC--CCCCCCcEEeecCCCceeeCCCCCc
Q psy6570 552 ANKCTP--NYCSNNGTCVLIEGKPSCKCLPPYS 582 (713)
Q Consensus 552 ~~~C~~--~~C~~~~~C~~~~g~~~C~C~~G~~ 582 (713)
+++|.. +.|..++.|+|+.|+|+|.|++||.
T Consensus 2 idEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 2 IDECAEGPHNCPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp SSTTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred ccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence 466663 3587788888888888888888886
|
Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A .... |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.058 Score=54.11 Aligned_cols=175 Identities=16% Similarity=0.111 Sum_probs=95.7
Q ss_pred CCceeEEEccCccc-EEecCCCCC-ceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCC
Q psy6570 6 SGNVTRVKREMNLK-TVLSNLHDP-RGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLS 83 (713)
Q Consensus 6 ~~~I~~~~~~~~~~-~~~~~~~~p-~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~ 83 (713)
++.|..++...... ........+ ..+.+.+.++.|+.+. ..+.|.+.+++.......+......+..+++++.
T Consensus 30 ~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~- 104 (289)
T cd00200 30 DGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS----SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD- 104 (289)
T ss_pred CcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEc----CCCeEEEEEcCcccceEEEeccCCcEEEEEEcCC-
Confidence 45666666554321 112222233 3677776655566554 3678888888764322223232346788999876
Q ss_pred CcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCc-eeEEEecCCCCcc
Q psy6570 84 GRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKD-RFVVYHTEDNGYK 162 (713)
Q Consensus 84 ~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~-~~~~~~~~~~~~~ 162 (713)
+.++++..... .|...++........+......+..+++++.+..|+.+. ..+.|..+++.... ...+... ...
T Consensus 105 ~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~ 179 (289)
T cd00200 105 GRILSSSSRDK-TIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS-QDGTIKLWDLRTGKCVATLTGH---TGE 179 (289)
T ss_pred CCEEEEecCCC-eEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc-CCCcEEEEEccccccceeEecC---ccc
Confidence 45555554333 788888773333333333344578899997755555443 46678888876332 3333211 123
Q ss_pred ceeeeeeCC--eEEEEeCCCCcEEEEcccCC
Q psy6570 163 PYKLEVFED--NLYFSTYRTNNILKINKFGN 191 (713)
Q Consensus 163 p~~i~~~~~--~ly~td~~~~~i~~~~~~~~ 191 (713)
...+.+..+ .|+.+. ..+.|..++...+
T Consensus 180 i~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~ 209 (289)
T cd00200 180 VNSVAFSPDGEKLLSSS-SDGTIKLWDLSTG 209 (289)
T ss_pred cceEEECCCcCEEEEec-CCCcEEEEECCCC
Confidence 445555533 455544 3667777766543
|
|
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0041 Score=65.17 Aligned_cols=127 Identities=17% Similarity=0.207 Sum_probs=81.6
Q ss_pred cEEecCCCCCceEEEeccCCeEEEeecCC---CCCCeEEEE---------------ecCCc------eEEEEEc-----C
Q psy6570 19 KTVLSNLHDPRGVAVDWVGKNLYWTDAGG---RSSNNIMVS---------------TLEGR------KKRTLLN-----T 69 (713)
Q Consensus 19 ~~~~~~~~~p~gla~D~~~~~ly~td~~~---~~~~~I~~~---------------~~~G~------~~~~l~~-----~ 69 (713)
++...++.+|.|+++++.++.||.++.+. +....|.+. +.+|. ....++. .
T Consensus 232 ~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~ 311 (399)
T COG2133 232 EIWSYGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWA 311 (399)
T ss_pred ceEEeccCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeec
Confidence 45678999999999999999999999865 222222221 11111 1111111 1
Q ss_pred CCCCcceEEEcCCC------CcEEEEccCCCCeEEEEecCCCCcEE---EEeCC-CCCCeeEEEeCCCCeEEEEcC-CCC
Q psy6570 70 GLNEPYDIALEPLS------GRMFWTELGIKPRISGASIDGKNKFN---LVDNN-IQWPTGITIDYPSQRLYWADP-KAR 138 (713)
Q Consensus 70 ~~~~p~~iavD~~~------~~ly~td~~~~~~I~~~~~dG~~~~~---l~~~~-~~~p~glavd~~~~~LY~~d~-~~~ 138 (713)
....|.+|++=.-+ +.||++..+.. .+.+.+++|..+.+ ++... ..+|.+|++.+ ++.||++|- ..+
T Consensus 312 ~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw-~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~-DGallv~~D~~~g 389 (399)
T COG2133 312 PHIAPSGMAFYTGDLFPAYRGDLFVGAHGSW-PVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAP-DGALLVLTDQGDG 389 (399)
T ss_pred cccccceeEEecCCcCccccCcEEEEeecce-eEEEeccCCCcceEEEEEEecCCCCcccceEECC-CCeEEEeecCCCC
Confidence 13446788884211 57888887766 67888999884333 33322 25899999996 456666654 577
Q ss_pred cEEEEeCCC
Q psy6570 139 TIESINLNG 147 (713)
Q Consensus 139 ~I~~~~~~g 147 (713)
+|+|+.+++
T Consensus 390 ~i~Rv~~~~ 398 (399)
T COG2133 390 RILRVSYAG 398 (399)
T ss_pred eEEEecCCC
Confidence 999998765
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.023 Score=59.02 Aligned_cols=126 Identities=13% Similarity=0.115 Sum_probs=92.6
Q ss_pred CCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCC
Q psy6570 49 SSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQ 128 (713)
Q Consensus 49 ~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~ 128 (713)
....|.+++.+|...+.+. .++....+|.+++....+.+++. +..||++++|....+.+-.+.-....++++++...
T Consensus 380 dgD~l~iyd~~~~e~kr~e-~~lg~I~av~vs~dGK~~vvaNd--r~el~vididngnv~~idkS~~~lItdf~~~~nsr 456 (668)
T COG4946 380 DGDKLGIYDKDGGEVKRIE-KDLGNIEAVKVSPDGKKVVVAND--RFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR 456 (668)
T ss_pred CCceEEEEecCCceEEEee-CCccceEEEEEcCCCcEEEEEcC--ceEEEEEEecCCCeeEecccccceeEEEEEcCCce
Confidence 4568999999998877655 67899999999986666777663 33799999998887777666667788999998888
Q ss_pred eEEEEcC---CCCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEeC
Q psy6570 129 RLYWADP---KARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTY 178 (713)
Q Consensus 129 ~LY~~d~---~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~ 178 (713)
+|-++-+ .+..|..++++|...-.+.+... ....-+++.++.+||....
T Consensus 457 ~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta-~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 457 WIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA-YDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred eEEEecCcceeeeeEEEEecCCCeEEEecCCcc-cccCcccCCCCcEEEEEec
Confidence 8877753 45678999999976655544322 2222345566788988643
|
|
| >KOG1218|consensus | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.068 Score=55.78 Aligned_cols=111 Identities=31% Similarity=0.733 Sum_probs=59.2
Q ss_pred CCCCcCCCCc-cCCCCCCCCCCeeecCCCCCeecCCCCccCCCCCCccccCCCCCCcccCCCCccCCCCCCCCCCCCcEE
Q psy6570 441 PKFYYGKNCQ-YSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTC 519 (713)
Q Consensus 441 ~~G~~g~~C~-~~~C~~~~~~~~C~~~~~~~~C~C~~G~~g~~C~~~~C~~~~~~~~C~C~~G~~g~~C~~~~C~~~g~C 519 (713)
..+|.|..|+ ..+|...+...+|.+... .|.+..+|.+..|.. +++.|..|... |.+...+
T Consensus 96 ~~~~~g~~C~~~~~~~~~c~~~~C~~~~~--~c~~~~~~~~~~C~~---------------~~~~g~~C~~~-c~~~~~~ 157 (316)
T KOG1218|consen 96 LNGYEGPQCESPCPCGDGCAEKTCANPRR--ECRCGGGYIGEQCGE---------------ENLVGLKCQRD-CQCTGGC 157 (316)
T ss_pred CCCCCcccccCCCCcCCcccccccCCCcc--ceecCCcCccccccc---------------cCCCCCCccCC-CCCcccc
Confidence 4677777776 233332211123333322 467777777766543 35666666542 2121222
Q ss_pred cCCCCCeeccCCCCCCCCCCcccCCCCCCCCCCCCCC-CCCCCCCcEEeecCCCceeeCCCCCc
Q psy6570 520 IPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCT-PNYCSNNGTCVLIEGKPSCKCLPPYS 582 (713)
Q Consensus 520 ~~~~~~~~C~C~~g~~G~~C~~~~~~~~c~~~~~~C~-~~~C~~~~~C~~~~g~~~C~C~~G~~ 582 (713)
.. ....|.|.+||.|..|+... ..|. ...|.+++.|....+ .+.+.+++.
T Consensus 158 ~~--~~~~c~c~~g~~g~~~~~~~---------~~c~~~~~~~~g~~C~~~~~--~~~~~~~~~ 208 (316)
T KOG1218|consen 158 DC--KNGICTCQPGFVGVFCVESC---------SGCSPLTACENGAKCNRSTG--SCLCYPGPS 208 (316)
T ss_pred CC--CCCceeccCCcccccccccC---------CCcCCCcccCCCCeeecccc--ccccCCCCc
Confidence 21 24578899999999887542 1133 234666668876654 355555554
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.033 Score=55.81 Aligned_cols=184 Identities=11% Similarity=0.057 Sum_probs=106.2
Q ss_pred ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEE----EE----cCCCCCcceEEEcCCCCcEEEEccCC
Q psy6570 22 LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRT----LL----NTGLNEPYDIALEPLSGRMFWTELGI 93 (713)
Q Consensus 22 ~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~----l~----~~~~~~p~~iavD~~~~~ly~td~~~ 93 (713)
.++.-..+.||+ .++.+++.+. .-.-+...+.+-+.+-. ++ .++-=+-+|||++ ...--|+|-.+.
T Consensus 99 ~TGdidiHdia~--~~~~l~fVNT---~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~~~ 172 (335)
T TIGR03032 99 VTGDIDAHDLAL--GAGRLLFVNT---LFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTALSQ 172 (335)
T ss_pred eccCcchhheee--cCCcEEEEEC---cceeEEEECCCCccccccCCccccccCccCceeecceeee-CCeEEEEEEeec
Confidence 445555666666 3556666665 44445555444332210 11 1111235689997 355567775432
Q ss_pred C--CeEEEEec-CCCCcE-----EEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCcccee
Q psy6570 94 K--PRISGASI-DGKNKF-----NLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYK 165 (713)
Q Consensus 94 ~--~~I~~~~~-dG~~~~-----~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~ 165 (713)
. +.-||-.. +|.... .++.+++..|.+.-+. +++||+.|++.++|.+++.+....+.+... ...|.|
T Consensus 173 sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~v---pG~~rG 247 (335)
T TIGR03032 173 SDVADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFL---PGFTRG 247 (335)
T ss_pred cCCcccccccccCCeEEEEeCCCCEEEcCccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEEC---CCCCcc
Confidence 1 12333222 221111 1233477888888888 899999999999999999984444455444 347889
Q ss_pred eeeeCCeEEEEeCCC-------------------CcEEEEcccCCCcceee--eccccccccEEEEeecccc
Q psy6570 166 LEVFEDNLYFSTYRT-------------------NNILKINKFGNSDFNVL--ANNLNRASDVLILQENKQA 216 (713)
Q Consensus 166 i~~~~~~ly~td~~~-------------------~~i~~~~~~~~~~~~~~--~~~~~~~~~i~v~~~~~q~ 216 (713)
|++.++.+++.-+.. -.|+.++..++..+..+ ...+...+++++....+++
T Consensus 248 L~f~G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg~r~P 319 (335)
T TIGR03032 248 LAFAGDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPGVRRP 319 (335)
T ss_pred cceeCCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecCCCCc
Confidence 998888777764331 12566666666655543 2345666677776666653
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00032 Score=46.20 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=22.2
Q ss_pred CCCCCCeeeccCCCceeeeCCCCcccc
Q psy6570 227 PCHQSALCINLPSSHTCLCPDHLTEEL 253 (713)
Q Consensus 227 ~C~~~~~C~~~~g~~~C~C~~G~~~~~ 253 (713)
.|+.++.|++++++|+|.|++||.|+.
T Consensus 7 ~C~~nA~C~~~~~~~~C~C~~Gy~GdG 33 (36)
T PF12947_consen 7 GCHPNATCTNTGGSYTCTCKPGYEGDG 33 (36)
T ss_dssp GS-TTCEEEE-TTSEEEEE-CEEECCS
T ss_pred CCCCCcEeecCCCCEEeECCCCCccCC
Confidence 699999999999999999999999764
|
; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A. |
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.053 Score=54.36 Aligned_cols=180 Identities=14% Similarity=0.105 Sum_probs=105.4
Q ss_pred CcccCCceeEEEc--cCcccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEE----------ecCCceEEEEE--
Q psy6570 2 ASISSGNVTRVKR--EMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVS----------TLEGRKKRTLL-- 67 (713)
Q Consensus 2 ad~~~~~I~~~~~--~~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~----------~~~G~~~~~l~-- 67 (713)
+....++++.+.. ++...+....+.+|-||++. .++||++-. ..|+++ ...+......+
T Consensus 23 sTYQagkL~~ig~~~~g~l~~~~r~F~r~MGl~~~--~~~l~~~t~-----~qiw~f~~~~n~l~~~~~~~~~D~~yvPr 95 (335)
T TIGR03032 23 TTYQAGKLFFIGLQPNGELDVFERTFPRPMGLAVS--PQSLTLGTR-----YQLWRFANVDNLLPAGQTHPGYDRLYVPR 95 (335)
T ss_pred EeeecceEEEEEeCCCCcEEEEeeccCccceeeee--CCeEEEEEc-----ceeEEcccccccccccccCCCCCeEEeee
Confidence 4566788887754 45555667889999999996 578887754 445554 11222222111
Q ss_pred ---cCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcE--------EEEeCCCCCCeeEEEeCCCCeEEEEcC-
Q psy6570 68 ---NTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKF--------NLVDNNIQWPTGITIDYPSQRLYWADP- 135 (713)
Q Consensus 68 ---~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~--------~l~~~~~~~p~glavd~~~~~LY~~d~- 135 (713)
..+.-..++|++ .++.|++.+..-. -|-+.+.+-+.+- .++..+-=.-||||++ +++--|++--
T Consensus 96 ~~~~TGdidiHdia~--~~~~l~fVNT~fS-CLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~~ 171 (335)
T TIGR03032 96 ASYVTGDIDAHDLAL--GAGRLLFVNTLFS-CLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTALS 171 (335)
T ss_pred eeeeccCcchhheee--cCCcEEEEECcce-eEEEECCCCccccccCCccccccCccCceeecceeee-CCeEEEEEEee
Confidence 123455778888 3556666554333 4555555443221 1111222245899998 4556676641
Q ss_pred --CCCcEEEEe-CCCC------ceeEEEecCCCCccceeeeeeCCeEEEEeCCCCcEEEEcccCCCcce
Q psy6570 136 --KARTIESIN-LNGK------DRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFN 195 (713)
Q Consensus 136 --~~~~I~~~~-~~g~------~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~ 195 (713)
....=||-+ .+|. .-+++.+. +..|.+-..++++||+.|++.+.|.++++..+....
T Consensus 172 ~sD~~~gWR~~~~~gG~vidv~s~evl~~G---LsmPhSPRWhdgrLwvldsgtGev~~vD~~~G~~e~ 237 (335)
T TIGR03032 172 QSDVADGWREGRRDGGCVIDIPSGEVVASG---LSMPHSPRWYQGKLWLLNSGRGELGYVDPQAGKFQP 237 (335)
T ss_pred ccCCcccccccccCCeEEEEeCCCCEEEcC---ccCCcCCcEeCCeEEEEECCCCEEEEEcCCCCcEEE
Confidence 111222222 2232 12334443 678888889999999999999999999987554433
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00097 Score=44.73 Aligned_cols=34 Identities=44% Similarity=1.097 Sum_probs=23.9
Q ss_pred CCCCC-CCCCCCcEEeecCCCceeeCCCCCcCCCC
Q psy6570 553 NKCTP-NYCSNNGTCVLIEGKPSCKCLPPYSGKQC 586 (713)
Q Consensus 553 ~~C~~-~~C~~~~~C~~~~g~~~C~C~~G~~G~~C 586 (713)
++|.. .+|.+++.|.+..+.|.|.|++||.|..|
T Consensus 3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C 37 (38)
T cd00054 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37 (38)
T ss_pred ccCCCCCCcCCCCEeECCCCCeEeECCCCCcCCcC
Confidence 45554 56766777777777777777777777665
|
Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.1 Score=57.05 Aligned_cols=162 Identities=12% Similarity=0.088 Sum_probs=96.6
Q ss_pred CceeEEEccCcccEEecCC-CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCc
Q psy6570 7 GNVTRVKREMNLKTVLSNL-HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGR 85 (713)
Q Consensus 7 ~~I~~~~~~~~~~~~~~~~-~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ 85 (713)
..|+.+++.+.....+..+ ..-..+++.+.++.|+++-... ..-.|+++++++...+.+... ......+++.|....
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~-g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~wSpDG~~ 305 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKD-GVLNIYVMGANGGTPSQLTSG-AGNNTEPSWSPDGQS 305 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecC-CcEEEEEEECCCCCeEeeccC-CCCcCCEEECCCCCE
Confidence 3577777765443222222 2234678888888888864310 234688888887766655533 234567888887776
Q ss_pred EEEE-ccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccce
Q psy6570 86 MFWT-ELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPY 164 (713)
Q Consensus 86 ly~t-d~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~ 164 (713)
|+++ +.....+|++++.++...+.+ ... . ..+++.+++++|+++.. ..|.++++.+...+.+.... .....
T Consensus 306 i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~-~--~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~~~lt~~~--~~~~~ 377 (429)
T PRK01742 306 ILFTSDRSGSPQVYRMSASGGGASLV-GGR-G--YSAQISADGKTLVMING--DNVVKQDLTSGSTEVLSSTF--LDESP 377 (429)
T ss_pred EEEEECCCCCceEEEEECCCCCeEEe-cCC-C--CCccCCCCCCEEEEEcC--CCEEEEECCCCCeEEecCCC--CCCCc
Confidence 7765 333445899998887765444 211 1 34678888888888754 56778888765544443221 11222
Q ss_pred eeeeeCCeEEEEeC
Q psy6570 165 KLEVFEDNLYFSTY 178 (713)
Q Consensus 165 ~i~~~~~~ly~td~ 178 (713)
.++.++..|+.+..
T Consensus 378 ~~sPdG~~i~~~s~ 391 (429)
T PRK01742 378 SISPNGIMIIYSST 391 (429)
T ss_pred eECCCCCEEEEEEc
Confidence 34445666666643
|
|
| >smart00179 EGF_CA Calcium-binding EGF-like domain | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00087 Score=45.40 Aligned_cols=31 Identities=32% Similarity=0.847 Sum_probs=28.1
Q ss_pred cCCCCC-CCCCCCCeeeccCCCceeeeCCCCc
Q psy6570 220 TNHCDD-KPCHQSALCINLPSSHTCLCPDHLT 250 (713)
Q Consensus 220 ~~~C~~-~~C~~~~~C~~~~g~~~C~C~~G~~ 250 (713)
+++|.. .+|.+++.|++..++|+|.|++||.
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 2 IDECASGNPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred cccCcCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 578887 7998888999999999999999997
|
|
| >KOG1218|consensus | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.066 Score=55.88 Aligned_cols=146 Identities=31% Similarity=0.660 Sum_probs=77.6
Q ss_pred CCeeecCCCcccCCccccC---CCCCCCCCCceeeCCCCCCCCCceeeC-CCCcccCCCCccC-CCCCCCCCCEEEcCCC
Q psy6570 328 DPHCICQENFYGTYCEKVN---NSMCPCLNQGMCYPDLTHPEPTYKCHC-APSYTGARCESRI-CENKCHNGGTCIATTQ 402 (713)
Q Consensus 328 ~~~C~C~~g~~G~~C~~~~---c~~~~C~~~~~C~~~~~~~~~~~~C~C-~~G~~g~~C~~~~-C~~~C~~~~~C~~~~~ 402 (713)
..+|.+..+|.|..|.... .....|.....|....... .+...| ..+|.|..|+... |...|.. .+|.+...
T Consensus 48 ~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~c~~~~~~~--~~~~~~~~~~~~g~~C~~~~~~~~~c~~-~~C~~~~~ 124 (316)
T KOG1218|consen 48 SGECGLGYGFVGSVCRIECVCGNAGGGCSQPCRCKNGGTCV--SSTGYCHLNGYEGPQCESPCPCGDGCAE-KTCANPRR 124 (316)
T ss_pred ceeEecccccCCCccccccccCCCCCcccCccccCCCCccc--CCCCcccCCCCCcccccCCCCcCCcccc-cccCCCcc
Confidence 3578888899888876543 1222333333443332211 223345 6888888887653 3322333 45665333
Q ss_pred eeeCCCCCccCCCCc--CCCCCCC----CCcEeccCCCCccccCCCCCcCCCCccCC--CCCC--CCC-CeeecCCCCCe
Q psy6570 403 TCVCPPGFTGDTCQQ--CLNLKCQ----NGGVCVNKTTGLECDCPKFYYGKNCQYSQ--CKNY--CVN-GECSITDSGPK 471 (713)
Q Consensus 403 ~C~C~~g~~g~~C~~--C~~~~C~----~~~~C~~~~~~~~C~C~~G~~g~~C~~~~--C~~~--~~~-~~C~~~~~~~~ 471 (713)
.|.+..+|.+..|.+ -....|. +...+.... -.|.|.+||.|..|+... |... +.+ +.|....+ .
T Consensus 125 ~c~~~~~~~~~~C~~~~~~g~~C~~~c~~~~~~~~~~--~~c~c~~g~~g~~~~~~~~~c~~~~~~~~g~~C~~~~~--~ 200 (316)
T KOG1218|consen 125 ECRCGGGYIGEQCGEENLVGLKCQRDCQCTGGCDCKN--GICTCQPGFVGVFCVESCSGCSPLTACENGAKCNRSTG--S 200 (316)
T ss_pred ceecCCcCccccccccCCCCCCccCCCCCccccCCCC--CceeccCCcccccccccCCCcCCCcccCCCCeeecccc--c
Confidence 677888887776653 1111122 111222111 268899999988886332 4433 444 47766655 4
Q ss_pred ecCCCCccC
Q psy6570 472 CMCSPGYSG 480 (713)
Q Consensus 472 C~C~~G~~g 480 (713)
+.+.+++.+
T Consensus 201 ~~~~~~~~~ 209 (316)
T KOG1218|consen 201 CLCYPGPSG 209 (316)
T ss_pred cccCCCCcc
Confidence 555555543
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.26 Score=48.97 Aligned_cols=185 Identities=14% Similarity=0.104 Sum_probs=114.4
Q ss_pred CCceeEEEccCcccEE-ecC-CCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCC
Q psy6570 6 SGNVTRVKREMNLKTV-LSN-LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLS 83 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~-~~~-~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~ 83 (713)
+..|+-+++..+.-+- ..+ -....+|.+.|.+ ..|++-+ ..+.|...|+.-..-..++. +..+--.|+|| .
T Consensus 79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S---~D~tvrLWDlR~~~cqg~l~--~~~~pi~AfDp-~ 151 (311)
T KOG1446|consen 79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSS---LDKTVRLWDLRVKKCQGLLN--LSGRPIAAFDP-E 151 (311)
T ss_pred CCceEEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecc---cCCeEEeeEecCCCCceEEe--cCCCcceeECC-C
Confidence 4566666666654222 333 3446788898885 6777776 56788888888655555553 34566789997 6
Q ss_pred CcEEEEccCCCCeEEEEecC---CCCcEEEEe--CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEe-CCCCceeEEEecC
Q psy6570 84 GRMFWTELGIKPRISGASID---GKNKFNLVD--NNIQWPTGITIDYPSQRLYWADPKARTIESIN-LNGKDRFVVYHTE 157 (713)
Q Consensus 84 ~~ly~td~~~~~~I~~~~~d---G~~~~~l~~--~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~-~~g~~~~~~~~~~ 157 (713)
|.||.+-.+.+ .|...++. ....+++.. .....-+.|.+.+.++.|.++.. .+.|+.++ ++|.....+....
T Consensus 152 GLifA~~~~~~-~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~G~~~~tfs~~~ 229 (311)
T KOG1446|consen 152 GLIFALANGSE-LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFDGTVKSTFSGYP 229 (311)
T ss_pred CcEEEEecCCC-eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC-CCcEEEEEccCCcEeeeEeecc
Confidence 88888877766 66665543 333333322 23445589999988888877764 45566666 5777555554433
Q ss_pred CCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceeeec
Q psy6570 158 DNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLAN 199 (713)
Q Consensus 158 ~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~~ 199 (713)
.....|....+. ++...++-...++|...+...+.++..+..
T Consensus 230 ~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 230 NAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred CCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 333344333332 455555556778888887766666555544
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0015 Score=40.44 Aligned_cols=28 Identities=36% Similarity=0.605 Sum_probs=24.3
Q ss_pred CCCCceEEEeccCCeEEEeecCCCCCCeEEEE
Q psy6570 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVS 56 (713)
Q Consensus 25 ~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~ 56 (713)
+..|.|||+| .++.||++|. .+++|.++
T Consensus 1 f~~P~gvav~-~~g~i~VaD~---~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADS---GNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEEC---CCTEEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEEC---CCCEEEEC
Confidence 4689999999 6799999999 78888864
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00049 Score=45.18 Aligned_cols=21 Identities=38% Similarity=0.838 Sum_probs=19.0
Q ss_pred CCeeeccCCCceeeeCCCCcc
Q psy6570 231 SALCINLPSSHTCLCPDHLTE 251 (713)
Q Consensus 231 ~~~C~~~~g~~~C~C~~G~~~ 251 (713)
+++|++.+++|+|.|++||..
T Consensus 9 ~h~C~~~~g~~~C~C~~Gy~L 29 (36)
T PF14670_consen 9 SHICVNTPGSYRCSCPPGYKL 29 (36)
T ss_dssp SSEEEEETTSEEEE-STTEEE
T ss_pred CCCCccCCCceEeECCCCCEE
Confidence 899999999999999999984
|
... |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.06 Score=56.36 Aligned_cols=61 Identities=25% Similarity=0.362 Sum_probs=45.9
Q ss_pred CcceEEEcCCCCcEEEEccCC-----CCeEEEEecCCCCcEEE-EeCC-------------CCCCeeEEEeCCCCeEEEE
Q psy6570 73 EPYDIALEPLSGRMFWTELGI-----KPRISGASIDGKNKFNL-VDNN-------------IQWPTGITIDYPSQRLYWA 133 (713)
Q Consensus 73 ~p~~iavD~~~~~ly~td~~~-----~~~I~~~~~dG~~~~~l-~~~~-------------~~~p~glavd~~~~~LY~~ 133 (713)
.+.+|++ +.++.+||++.+. .++|++++++|...+.+ +... -....+||+.+++.+||.+
T Consensus 86 D~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEE-ecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 5669999 5789999999876 14999999999886665 2221 1234689999888878887
Q ss_pred c
Q psy6570 134 D 134 (713)
Q Consensus 134 d 134 (713)
-
T Consensus 165 ~ 165 (326)
T PF13449_consen 165 M 165 (326)
T ss_pred E
Confidence 4
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.13 Score=53.80 Aligned_cols=182 Identities=22% Similarity=0.303 Sum_probs=91.4
Q ss_pred CCceeEEEccCcccEEecCCCCCceEEEec----cCCe---EEEeecCCCCCCeEEEEecCC--ceEEEEE------cCC
Q psy6570 6 SGNVTRVKREMNLKTVLSNLHDPRGVAVDW----VGKN---LYWTDAGGRSSNNIMVSTLEG--RKKRTLL------NTG 70 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~~~~~p~gla~D~----~~~~---ly~td~~~~~~~~I~~~~~~G--~~~~~l~------~~~ 70 (713)
.+-++.++++|+....+. ..+|..+.+-. .++. +..++.. ...++|..+.++. ...+.+. ...
T Consensus 77 ~~GL~VYdL~Gk~lq~~~-~Gr~NNVDvrygf~l~g~~vDlavas~R~-~g~n~l~~f~id~~~g~L~~v~~~~~p~~~~ 154 (381)
T PF02333_consen 77 KGGLYVYDLDGKELQSLP-VGRPNNVDVRYGFPLNGKTVDLAVASDRS-DGRNSLRLFRIDPDTGELTDVTDPAAPIATD 154 (381)
T ss_dssp TTEEEEEETTS-EEEEE--SS-EEEEEEEEEEEETTEEEEEEEEEE-C-CCT-EEEEEEEETTTTEEEE-CBTTC-EE-S
T ss_pred CCCEEEEcCCCcEEEeec-CCCcceeeeecceecCCceEEEEEEecCc-CCCCeEEEEEecCCCCcceEcCCCCcccccc
Confidence 445777888886533332 34554443321 1121 2334431 0124544444432 2333332 134
Q ss_pred CCCcceEEE--cCCCCcEEEEccCCCCeEEEEec--CCCC--cEEEEe--CCCCCCeeEEEeCCCCeEEEEcCCCCcEEE
Q psy6570 71 LNEPYDIAL--EPLSGRMFWTELGIKPRISGASI--DGKN--KFNLVD--NNIQWPTGITIDYPSQRLYWADPKARTIES 142 (713)
Q Consensus 71 ~~~p~~iav--D~~~~~ly~td~~~~~~I~~~~~--dG~~--~~~l~~--~~~~~p~glavd~~~~~LY~~d~~~~~I~~ 142 (713)
+..|.||++ ++.++.+|..-.+..+.++...+ ++.. .-+++. ..-..|.|+++|...++||+++.. .-||+
T Consensus 155 ~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~-~GIW~ 233 (381)
T PF02333_consen 155 LSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEED-VGIWR 233 (381)
T ss_dssp SSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETT-TEEEE
T ss_pred cccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCc-cEEEE
Confidence 566888887 56677777654333335554433 3433 222331 123478999999999999999976 46999
Q ss_pred EeCC---CCceeEEEec-CC-CCccceeeeee-----CCeEEEEeCCCCcEEEEcccC
Q psy6570 143 INLN---GKDRFVVYHT-ED-NGYKPYKLEVF-----EDNLYFSTYRTNNILKINKFG 190 (713)
Q Consensus 143 ~~~~---g~~~~~~~~~-~~-~~~~p~~i~~~-----~~~ly~td~~~~~i~~~~~~~ 190 (713)
++.+ +..++.+... .. ......||+++ .++|.+++.+.+....++..+
T Consensus 234 y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 234 YDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 9976 3444555332 11 22355677764 357888888877766666543
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.061 Score=56.01 Aligned_cols=123 Identities=14% Similarity=0.165 Sum_probs=93.6
Q ss_pred CCceeEEEccCcc-cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCC
Q psy6570 6 SGNVTRVKREMNL-KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSG 84 (713)
Q Consensus 6 ~~~I~~~~~~~~~-~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~ 84 (713)
.+.|-.++.++.+ +.+..++.....+++++.+..+.+++. ...|++++++....+.+-.+.-....++++.|..+
T Consensus 381 gD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd----r~el~vididngnv~~idkS~~~lItdf~~~~nsr 456 (668)
T COG4946 381 GDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND----RFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR 456 (668)
T ss_pred CceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcC----ceEEEEEEecCCCeeEecccccceeEEEEEcCCce
Confidence 3467777888755 677889999999999988777887775 68899999998888887777677788999998877
Q ss_pred cEEEEccC---CCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEc
Q psy6570 85 RMFWTELG---IKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWAD 134 (713)
Q Consensus 85 ~ly~td~~---~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d 134 (713)
+|-++--. +. .|...+|+|...-.+.. ...+-..-|+|+++..||+-.
T Consensus 457 ~iAYafP~gy~tq-~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 457 WIAYAFPEGYYTQ-SIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eEEEecCcceeee-eEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence 77555321 23 78899999865544432 334445679999999999974
|
|
| >cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0029 Score=41.72 Aligned_cols=30 Identities=50% Similarity=1.059 Sum_probs=21.5
Q ss_pred CCCCCCCcEEeecCCCceeeCCCCCcCC-CC
Q psy6570 557 PNYCSNNGTCVLIEGKPSCKCLPPYSGK-QC 586 (713)
Q Consensus 557 ~~~C~~~~~C~~~~g~~~C~C~~G~~G~-~C 586 (713)
..+|.+++.|++..+.|+|.|+.||.|. .|
T Consensus 5 ~~~C~~~~~C~~~~~~~~C~C~~g~~g~~~C 35 (36)
T cd00053 5 SNPCSNGGTCVNTPGSYRCVCPPGYTGDRSC 35 (36)
T ss_pred CCCCCCCCEEecCCCCeEeECCCCCcccCCc
Confidence 3456667778777777788888888776 44
|
|
| >smart00181 EGF Epidermal growth factor-like domain | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0029 Score=41.60 Aligned_cols=28 Identities=46% Similarity=1.096 Sum_probs=20.2
Q ss_pred CCCCCCcEEeecCCCceeeCCCCCcC-CCC
Q psy6570 558 NYCSNNGTCVLIEGKPSCKCLPPYSG-KQC 586 (713)
Q Consensus 558 ~~C~~~~~C~~~~g~~~C~C~~G~~G-~~C 586 (713)
.+|.++ +|++..++|+|.|++||.| ..|
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g~~~C 34 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTGDKRC 34 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCccCCcc
Confidence 456666 7777777778888888877 554
|
|
| >cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0032 Score=42.13 Aligned_cols=32 Identities=31% Similarity=0.819 Sum_probs=28.5
Q ss_pred cCCCCC-CCCCCCCeeeccCCCceeeeCCCCcc
Q psy6570 220 TNHCDD-KPCHQSALCINLPSSHTCLCPDHLTE 251 (713)
Q Consensus 220 ~~~C~~-~~C~~~~~C~~~~g~~~C~C~~G~~~ 251 (713)
+++|.. .+|.+++.|++.+++|+|.|++||.|
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 2 IDECASGNPCQNGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred cccCCCCCCcCCCCEeECCCCCeEeECCCCCcC
Confidence 477887 78988899999999999999999985
|
Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.12 Score=57.28 Aligned_cols=138 Identities=12% Similarity=0.011 Sum_probs=86.3
Q ss_pred CCceeEEEccCcccEE-ecCCCCCceEEEeccCCeEEEeecCCCC-----------------------------------
Q psy6570 6 SGNVTRVKREMNLKTV-LSNLHDPRGVAVDWVGKNLYWTDAGGRS----------------------------------- 49 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~-~~~~~~p~gla~D~~~~~ly~td~~~~~----------------------------------- 49 (713)
.+.+..||.++.+..- +.-..+|+.+++++.++.+|++......
T Consensus 214 ~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V 293 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI 293 (635)
T ss_pred eEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE
Confidence 4556677777532111 3334589999999998899988521100
Q ss_pred -CCeEEEEecCC-----ceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCC---------cEEEEe-C
Q psy6570 50 -SNNIMVSTLEG-----RKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKN---------KFNLVD-N 113 (713)
Q Consensus 50 -~~~I~~~~~~G-----~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~---------~~~l~~-~ 113 (713)
.++|.++|... ......+..+ ..|+||+++|...+||++..... .+.++++.... +.+++. .
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~-tVSVIDv~k~k~~~~~~~~~~~~vvaev 371 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSP-TVTVIDVRKLDDLFDGKIKPRDAVVAEP 371 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCC-cEEEEEChhhhhhhhccCCccceEEEee
Confidence 12344444332 1122223233 78999999999999999987666 78887775422 122322 1
Q ss_pred C-CCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCC
Q psy6570 114 N-IQWPTGITIDYPSQRLYWADPKARTIESINLN 146 (713)
Q Consensus 114 ~-~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~ 146 (713)
. -..|...+||.. ++.|.+-.-...|.+.+++
T Consensus 372 evGlGPLHTaFDg~-G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 372 ELGLGPLHTAFDGR-GNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred ccCCCcceEEECCC-CCEEEeEeecceeEEEehH
Confidence 1 346889999954 6799987766777777754
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.34 Score=49.65 Aligned_cols=182 Identities=15% Similarity=0.139 Sum_probs=95.7
Q ss_pred CCceeEEEccCcccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecC--CceEEEEEc--CCCCCcc--eEEE
Q psy6570 6 SGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE--GRKKRTLLN--TGLNEPY--DIAL 79 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~--G~~~~~l~~--~~~~~p~--~iav 79 (713)
..+|..+|+..++ ++..+.-|.-.-+=|..+.=|.+-- ..+++..+.+| |+..+.... .....|. .=++
T Consensus 117 a~SVtVVDl~~~k--vv~ei~~PGC~~iyP~~~~~F~~lC---~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~ 191 (342)
T PF06433_consen 117 ATSVTVVDLAAKK--VVGEIDTPGCWLIYPSGNRGFSMLC---GDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAY 191 (342)
T ss_dssp SEEEEEEETTTTE--EEEEEEGTSEEEEEEEETTEEEEEE---TTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EE
T ss_pred CCeEEEEECCCCc--eeeeecCCCEEEEEecCCCceEEEe---cCCceEEEEECCCCCEeEeeccccCCCCcccccccce
Confidence 3345555555432 2233444443322222222233444 45677766665 554322211 1112221 1233
Q ss_pred cCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCC---------CCCCe---eEEEeCCCCeEEEEc----CCCC-----
Q psy6570 80 EPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNN---------IQWPT---GITIDYPSQRLYWAD----PKAR----- 138 (713)
Q Consensus 80 D~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~---------~~~p~---glavd~~~~~LY~~d----~~~~----- 138 (713)
+..++++||.... +.|+.+++.|...+....-. -.+|. -+|+++..++||+.. .+++
T Consensus 192 ~~~~~~~~F~Sy~--G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 192 SRDGGRLYFVSYE--GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp ETTTTEEEEEBTT--SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred ECCCCeEEEEecC--CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 3456678887653 37999999998755443211 12343 389999999999974 1222
Q ss_pred cEEEEeCCCCceeEEEecCCCCccc-eeeeeeC--C-eEEEEeCCCCcEEEEcccCCCcceeee
Q psy6570 139 TIESINLNGKDRFVVYHTEDNGYKP-YKLEVFE--D-NLYFSTYRTNNILKINKFGNSDFNVLA 198 (713)
Q Consensus 139 ~I~~~~~~g~~~~~~~~~~~~~~~p-~~i~~~~--~-~ly~td~~~~~i~~~~~~~~~~~~~~~ 198 (713)
.||.+|+....|..-+.. .+| .+|.+.+ . .||.++...+.+..++..++..+..+.
T Consensus 270 eVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEEECCCCeEEEEEeC----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 499999876654333321 222 3566542 2 677777777888889887776555544
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0046 Score=39.46 Aligned_cols=26 Identities=42% Similarity=0.936 Sum_probs=15.4
Q ss_pred CCCCCcEEeecCCCceeeCCCCCcCCCC
Q psy6570 559 YCSNNGTCVLIEGKPSCKCLPPYSGKQC 586 (713)
Q Consensus 559 ~C~~~~~C~~~~g~~~C~C~~G~~G~~C 586 (713)
.|+++|+|+.. ..+|.|.+||+|..|
T Consensus 7 ~C~~~G~C~~~--~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 7 ICSGHGTCVSP--CGRCVCDSGYTGPDC 32 (32)
T ss_pred ccCCCCEEeCC--CCEEECCCCCcCCCC
Confidence 46666666644 235666666666554
|
The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins |
| >PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0018 Score=42.64 Aligned_cols=26 Identities=38% Similarity=0.865 Sum_probs=20.3
Q ss_pred CCCCCcEEeecCCCceeeCCCCCcCC
Q psy6570 559 YCSNNGTCVLIEGKPSCKCLPPYSGK 584 (713)
Q Consensus 559 ~C~~~~~C~~~~g~~~C~C~~G~~G~ 584 (713)
.|+.+++|+++.++|.|.|++||.|+
T Consensus 7 ~C~~nA~C~~~~~~~~C~C~~Gy~Gd 32 (36)
T PF12947_consen 7 GCHPNATCTNTGGSYTCTCKPGYEGD 32 (36)
T ss_dssp GS-TTCEEEE-TTSEEEEE-CEEECC
T ss_pred CCCCCcEeecCCCCEEeECCCCCccC
Confidence 58889999999999999999999875
|
; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A. |
| >cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0042 Score=40.88 Aligned_cols=28 Identities=43% Similarity=0.946 Sum_probs=19.9
Q ss_pred CCCCCCCcEeccCCCCccccCCCCCcCC
Q psy6570 420 NLKCQNGGVCVNKTTGLECDCPKFYYGK 447 (713)
Q Consensus 420 ~~~C~~~~~C~~~~~~~~C~C~~G~~g~ 447 (713)
..+|.+++.|++..++|.|.|+.||.|.
T Consensus 5 ~~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 5 SNPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCCEEecCCCCeEeECCCCCccc
Confidence 4567667777777777777777777766
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.34 Score=47.95 Aligned_cols=171 Identities=13% Similarity=0.168 Sum_probs=92.8
Q ss_pred cCCceeEEEccCcccEEecCCCCCce--EEEeccCCeEEEeecCCCCCCeEEEEe-cCCceEEEEEcCC-----CCCcce
Q psy6570 5 SSGNVTRVKREMNLKTVLSNLHDPRG--VAVDWVGKNLYWTDAGGRSSNNIMVST-LEGRKKRTLLNTG-----LNEPYD 76 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~~~~~~~~~p~g--la~D~~~~~ly~td~~~~~~~~I~~~~-~~G~~~~~l~~~~-----~~~p~~ 76 (713)
..+.|+.++..+.+.+-...+..+.. .++ .++.||+... .++|..++ .+|+..-.+.... +..+..
T Consensus 44 ~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~v~v~~~----~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~ 117 (238)
T PF13360_consen 44 GDGNLYALDAKTGKVLWRFDLPGPISGAPVV--DGGRVYVGTS----DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSS 117 (238)
T ss_dssp TTSEEEEEETTTSEEEEEEECSSCGGSGEEE--ETTEEEEEET----TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SE
T ss_pred CCCEEEEEECCCCCEEEEeeccccccceeee--cccccccccc----eeeeEecccCCcceeeeeccccccccccccccC
Confidence 56777888874433222122223211 233 4688888875 34888998 6676655432211 223444
Q ss_pred EEEcCCCCcEEEEccCCCCeEEEEecC-CCCcEEEEeCCCC--C--------CeeEEEeCCCCeEEEEcCCCCcEEEEeC
Q psy6570 77 IALEPLSGRMFWTELGIKPRISGASID-GKNKFNLVDNNIQ--W--------PTGITIDYPSQRLYWADPKARTIESINL 145 (713)
Q Consensus 77 iavD~~~~~ly~td~~~~~~I~~~~~d-G~~~~~l~~~~~~--~--------p~glavd~~~~~LY~~d~~~~~I~~~~~ 145 (713)
++++ ++.||+.... . .|..+++. |+.+-..-..... . ...+.++ +++||++..... +..+++
T Consensus 118 ~~~~--~~~~~~~~~~-g-~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~g~-~~~~d~ 190 (238)
T PF13360_consen 118 PAVD--GDRLYVGTSS-G-KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS--DGRVYVSSGDGR-VVAVDL 190 (238)
T ss_dssp EEEE--TTEEEEEETC-S-EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC--TTEEEEECCTSS-EEEEET
T ss_pred ceEe--cCEEEEEecc-C-cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE--CCEEEEEcCCCe-EEEEEC
Confidence 5554 6677777642 2 68888855 4332222111101 0 1223333 569998885544 555576
Q ss_pred CCCceeEEEecCCCCcccee-eeeeCCeEEEEeCCCCcEEEEcccCCCc
Q psy6570 146 NGKDRFVVYHTEDNGYKPYK-LEVFEDNLYFSTYRTNNILKINKFGNSD 193 (713)
Q Consensus 146 ~g~~~~~~~~~~~~~~~p~~-i~~~~~~ly~td~~~~~i~~~~~~~~~~ 193 (713)
....+. .... .....+ ....++.||+.+ ..+.|+.+++.++..
T Consensus 191 ~tg~~~-w~~~---~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 191 ATGEKL-WSKP---ISGIYSLPSVDGGTLYVTS-SDGRLYALDLKTGKV 234 (238)
T ss_dssp TTTEEE-EEEC---SS-ECECEECCCTEEEEEE-TTTEEEEEETTTTEE
T ss_pred CCCCEE-EEec---CCCccCCceeeCCEEEEEe-CCCEEEEEECCCCCE
Confidence 655533 3222 223444 566788999998 678899998876643
|
... |
| >PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0019 Score=31.90 Aligned_cols=13 Identities=46% Similarity=1.410 Sum_probs=10.9
Q ss_pred eeeCCCCcccCCC
Q psy6570 656 ICICPRGYAGVRC 668 (713)
Q Consensus 656 ~C~C~~Gy~G~~C 668 (713)
+|+|++||+|.+|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 5999999999987
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.12 Score=54.20 Aligned_cols=123 Identities=16% Similarity=0.260 Sum_probs=73.4
Q ss_pred cCCCCCceEEEe--ccCCeEEEeecCCCCCCeEEEEec----CCceEEEEEcC--CCCCcceEEEcCCCCcEEEEccCCC
Q psy6570 23 SNLHDPRGVAVD--WVGKNLYWTDAGGRSSNNIMVSTL----EGRKKRTLLNT--GLNEPYDIALEPLSGRMFWTELGIK 94 (713)
Q Consensus 23 ~~~~~p~gla~D--~~~~~ly~td~~~~~~~~I~~~~~----~G~~~~~l~~~--~~~~p~~iavD~~~~~ly~td~~~~ 94 (713)
+.+..|.||++= +.++.+|..-.+ ..+.+..+.| +|...-.+++. --.+|.|+++|...+.||+.+...
T Consensus 153 ~~~~e~yGlcly~~~~~g~~ya~v~~--k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~- 229 (381)
T PF02333_consen 153 TDLSEPYGLCLYRSPSTGALYAFVNG--KDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEEDV- 229 (381)
T ss_dssp -SSSSEEEEEEEE-TTT--EEEEEEE--TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTT-
T ss_pred cccccceeeEEeecCCCCcEEEEEec--CCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCcc-
Confidence 456678899874 445666654321 2344444333 34332233331 136899999999999999999653
Q ss_pred CeEEEEecC---CCCcEEEEeC---CC-CCCeeEEEeC---CCCeEEEEcCCCCcEEEEeCCCCc
Q psy6570 95 PRISGASID---GKNKFNLVDN---NI-QWPTGITIDY---PSQRLYWADPKARTIESINLNGKD 149 (713)
Q Consensus 95 ~~I~~~~~d---G~~~~~l~~~---~~-~~p~glavd~---~~~~LY~~d~~~~~I~~~~~~g~~ 149 (713)
-||++..+ +..++.+... .+ .-..||+|-. ..++|.+++.+.++...++..+..
T Consensus 230 -GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 230 -GIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp -EEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred -EEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 59999886 3334444221 12 3567899853 246899999998888888877753
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.092 Score=49.06 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=68.5
Q ss_pred CCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCc--eEEEEEc-C--CCCCcceEEEcCCCCcEEEEccCCCCeEEE
Q psy6570 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR--KKRTLLN-T--GLNEPYDIALEPLSGRMFWTELGIKPRISG 99 (713)
Q Consensus 25 ~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~--~~~~l~~-~--~~~~p~~iavD~~~~~ly~td~~~~~~I~~ 99 (713)
-.+-.||+.| ..+|..+|. +..+...++..- ..++.+. + ++...+-|. +.+|.||---|... +|.|
T Consensus 130 ~GeGWgLt~d--~~~LimsdG----satL~frdP~tfa~~~~v~VT~~g~pv~~LNELE--~VdG~lyANVw~t~-~I~r 200 (262)
T COG3823 130 EGEGWGLTSD--DKNLIMSDG----SATLQFRDPKTFAELDTVQVTDDGVPVSKLNELE--WVDGELYANVWQTT-RIAR 200 (262)
T ss_pred CCcceeeecC--CcceEeeCC----ceEEEecCHHHhhhcceEEEEECCeeccccccee--eeccEEEEeeeeec-ceEE
Confidence 3445677776 344665664 344544444321 1111111 1 123333443 36788887767666 8999
Q ss_pred EecCCCCcEEEEe------------CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC
Q psy6570 100 ASIDGKNKFNLVD------------NNIQWPTGITIDYPSQRLYWADPKARTIESINLNG 147 (713)
Q Consensus 100 ~~~dG~~~~~l~~------------~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g 147 (713)
++.+.......+. .+.+.++|||.|+..+++|++-..-..++.+.+++
T Consensus 201 I~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk~~~ 260 (262)
T COG3823 201 IDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEVKLDE 260 (262)
T ss_pred EcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeEEEEecC
Confidence 9988665554442 23457899999999999999987666666665543
|
|
| >smart00181 EGF Epidermal growth factor-like domain | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0059 Score=40.10 Aligned_cols=28 Identities=43% Similarity=1.043 Sum_probs=17.9
Q ss_pred CCCCCCcEeccCCCCccccCCCCCcC-CCC
Q psy6570 421 LKCQNGGVCVNKTTGLECDCPKFYYG-KNC 449 (713)
Q Consensus 421 ~~C~~~~~C~~~~~~~~C~C~~G~~g-~~C 449 (713)
.+|.++ .|++..++|.|.|++||.| ..|
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g~~~C 34 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTGDKRC 34 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCccCCcc
Confidence 456666 6766666677777777766 444
|
|
| >PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0079 Score=38.39 Aligned_cols=25 Identities=44% Similarity=1.214 Sum_probs=13.9
Q ss_pred CCCCCEEEcCCCeeeCCCCCccCCC
Q psy6570 391 CHNGGTCIATTQTCVCPPGFTGDTC 415 (713)
Q Consensus 391 C~~~~~C~~~~~~C~C~~g~~g~~C 415 (713)
|+++|+|+...++|.|++||+|+.|
T Consensus 8 C~~~G~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 8 CSGHGTCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred cCCCCEEeCCCCEEECCCCCcCCCC
Confidence 5555666543356666666665543
|
The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins |
| >smart00051 DSL delta serrate ligand | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0089 Score=45.11 Aligned_cols=46 Identities=26% Similarity=0.432 Sum_probs=29.1
Q ss_pred eeecCCCcccCCCCcCCCCCCCCCCCCeecCCCCccCCCCCceeeCCCCcccCCC
Q psy6570 614 VCTCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRC 668 (713)
Q Consensus 614 ~C~C~~G~~G~~C~~~~~C~~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C 668 (713)
.=.|+++|.|..|+....+.+.+..+.+|.. .+.|+|.+||+|.+|
T Consensus 18 rv~C~~~~yG~~C~~~C~~~~d~~~~~~Cd~---------~G~~~C~~Gw~G~~C 63 (63)
T smart00051 18 RVTCDENYYGEGCNKFCRPRDDFFGHYTCDE---------NGNKGCLEGWMGPYC 63 (63)
T ss_pred EeeCCCCCcCCccCCEeCcCccccCCccCCc---------CCCEecCCCCcCCCC
Confidence 4467777777777653333334455566643 267888888888776
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.95 E-value=1.7 Score=43.13 Aligned_cols=137 Identities=11% Similarity=0.138 Sum_probs=79.0
Q ss_pred cCCeEEEeecCCCCCCeEEEEecCCceEEEE-EcCC--CCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEe
Q psy6570 36 VGKNLYWTDAGGRSSNNIMVSTLEGRKKRTL-LNTG--LNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVD 112 (713)
Q Consensus 36 ~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l-~~~~--~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~ 112 (713)
.++..|++|. ..+ +.+.++.....-+| .+-. ...-+.++| ..++-|++.++.. +...+......-+++.
T Consensus 137 sGn~aYVadl---ddg-fLivdvsdpssP~lagrya~~~~d~~~v~I--SGn~AYvA~~d~G--L~ivDVSnp~sPvli~ 208 (370)
T COG5276 137 SGNYAYVADL---DDG-FLIVDVSDPSSPQLAGRYALPGGDTHDVAI--SGNYAYVAWRDGG--LTIVDVSNPHSPVLIG 208 (370)
T ss_pred cCCEEEEeec---cCc-EEEEECCCCCCceeeeeeccCCCCceeEEE--ecCeEEEEEeCCC--eEEEEccCCCCCeEEE
Confidence 5678999997 333 44445443332222 2211 122356787 4778898887655 5566665555555554
Q ss_pred CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceee---eeeCCeEEEEeCCCCc
Q psy6570 113 NNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKL---EVFEDNLYFSTYRTNN 182 (713)
Q Consensus 113 ~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i---~~~~~~ly~td~~~~~ 182 (713)
.--..|.--++.+..++.|.++...+ +..++.++.....++..-. ...|.++ .+.+++.|++|..++.
T Consensus 209 ~~n~g~g~~sv~vsdnr~y~vvy~eg-vlivd~s~~ssp~~~gsye-t~~p~~~s~v~Vs~~~~Yvadga~gl 279 (370)
T COG5276 209 SYNTGPGTYSVSVSDNRAYLVVYDEG-VLIVDVSGPSSPTVFGSYE-TSNPVSISTVPVSGEYAYVADGAKGL 279 (370)
T ss_pred EEecCCceEEEEecCCeeEEEEcccc-eEEEecCCCCCceEeeccc-cCCcccccceecccceeeeeccccCc
Confidence 32222344444555789999986655 5667777755333332221 3355554 7889999999876553
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.27 Score=51.45 Aligned_cols=116 Identities=17% Similarity=0.166 Sum_probs=73.3
Q ss_pred CCceEEEeccCCeEEEeecCCCCC------CeEEEEecCCceEEEE-EcCCC-------------CCcceEEEcCCCCcE
Q psy6570 27 DPRGVAVDWVGKNLYWTDAGGRSS------NNIMVSTLEGRKKRTL-LNTGL-------------NEPYDIALEPLSGRM 86 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~td~~~~~~------~~I~~~~~~G~~~~~l-~~~~~-------------~~p~~iavD~~~~~l 86 (713)
.++||++ ..++.+||++. .. .+|.+++++|+..+.+ +...+ ....+||+.+..+.|
T Consensus 86 D~Egi~~-~~~g~~~is~E---~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l 161 (326)
T PF13449_consen 86 DPEGIAV-PPDGSFWISSE---GGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTL 161 (326)
T ss_pred ChhHeEE-ecCCCEEEEeC---CccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEE
Confidence 7789999 57799999998 66 8999999999886655 22221 235589999876668
Q ss_pred EEEccCC-------C-------CeEEEEecCC--CCcEEEE-e-C------CCCCCeeEEEeCCCCeEEEEcCC------
Q psy6570 87 FWTELGI-------K-------PRISGASIDG--KNKFNLV-D-N------NIQWPTGITIDYPSQRLYWADPK------ 136 (713)
Q Consensus 87 y~td~~~-------~-------~~I~~~~~dG--~~~~~l~-~-~------~~~~p~glavd~~~~~LY~~d~~------ 136 (713)
|.+.... . .+|.+.+... .....++ . . ....+..|+.-+ +++|++.+..
T Consensus 162 ~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~-d~~lLvLER~~~~~~~ 240 (326)
T PF13449_consen 162 FAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALP-DGRLLVLERDFSPGTG 240 (326)
T ss_pred EEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEEC-CCcEEEEEccCCCCcc
Confidence 7764221 1 2555665542 2222222 1 1 234455555553 5668888743
Q ss_pred -CCcEEEEeCCC
Q psy6570 137 -ARTIESINLNG 147 (713)
Q Consensus 137 -~~~I~~~~~~g 147 (713)
..+|+++++..
T Consensus 241 ~~~ri~~v~l~~ 252 (326)
T PF13449_consen 241 NYKRIYRVDLSD 252 (326)
T ss_pred ceEEEEEEEccc
Confidence 34688888754
|
|
| >PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.0048 Score=30.51 Aligned_cols=12 Identities=50% Similarity=1.625 Sum_probs=6.6
Q ss_pred eecCCCcccCCC
Q psy6570 615 CTCVNGWSGITC 626 (713)
Q Consensus 615 C~C~~G~~G~~C 626 (713)
|.|++||+|..|
T Consensus 2 C~C~~G~~G~~C 13 (13)
T PF12661_consen 2 CQCPPGWTGPNC 13 (13)
T ss_dssp EEE-TTEETTTT
T ss_pred ccCcCCCcCCCC
Confidence 566666666554
|
|
| >PF12662 cEGF: Complement Clr-like EGF-like | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.0064 Score=35.73 Aligned_cols=19 Identities=26% Similarity=0.780 Sum_probs=9.7
Q ss_pred cceeecCCCcc----cCCCCcCC
Q psy6570 612 KPVCTCVNGWS----GITCSERV 630 (713)
Q Consensus 612 ~~~C~C~~G~~----G~~C~~~~ 630 (713)
+|.|+|++||. |..|.+++
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DId 23 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDID 23 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCC
Confidence 35566666654 34455443
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=95.85 E-value=1.1 Score=47.59 Aligned_cols=115 Identities=15% Similarity=0.094 Sum_probs=72.2
Q ss_pred ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEe-cCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEE
Q psy6570 22 LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVST-LEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGA 100 (713)
Q Consensus 22 ~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~-~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~ 100 (713)
+....+|.+||+...+..+.++-. .+ |.++. +.+- .+ + .-...|.++|+.|....+-+- +..+.|+..
T Consensus 402 ~~lg~QP~~lav~~d~~~avv~~~----~~-iv~l~~~~~~-~~--~-~~~y~~s~vAv~~~~~~vaVG--G~Dgkvhvy 470 (603)
T KOG0318|consen 402 VKLGSQPKGLAVLSDGGTAVVACI----SD-IVLLQDQTKV-SS--I-PIGYESSAVAVSPDGSEVAVG--GQDGKVHVY 470 (603)
T ss_pred eecCCCceeEEEcCCCCEEEEEec----Cc-EEEEecCCcc-ee--e-ccccccceEEEcCCCCEEEEe--cccceEEEE
Confidence 456678999999977666666654 23 44433 3331 11 1 123578999999865544443 344478888
Q ss_pred ecCCCCcEE--EEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCC
Q psy6570 101 SIDGKNKFN--LVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGK 148 (713)
Q Consensus 101 ~~dG~~~~~--l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~ 148 (713)
.+.|..+.. +.......++.|++.|+..+|-..|. +++|..++....
T Consensus 471 sl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da-~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 471 SLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA-SRKVVLYDVASR 519 (603)
T ss_pred EecCCcccceeeeecccCCceEEEECCCCcEEEEecc-CCcEEEEEcccC
Confidence 888865433 22345667899999998888887785 345555555443
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.11 Score=57.70 Aligned_cols=71 Identities=18% Similarity=0.358 Sum_probs=49.6
Q ss_pred ecCCCCCceEEEeccCCeEEEeecCCC----------------CCCeEEEEecCCc-------eEEEEEc----------
Q psy6570 22 LSNLHDPRGVAVDWVGKNLYWTDAGGR----------------SSNNIMVSTLEGR-------KKRTLLN---------- 68 (713)
Q Consensus 22 ~~~~~~p~gla~D~~~~~ly~td~~~~----------------~~~~I~~~~~~G~-------~~~~l~~---------- 68 (713)
.+.+.+|++|++++.++.||++.+++. ..+.|+++.+++. ...+++.
T Consensus 346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~ 425 (524)
T PF05787_consen 346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGN 425 (524)
T ss_pred cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccc
Confidence 457899999999999999999876432 1247999988765 2222221
Q ss_pred -------CCCCCcceEEEcCCCCcEEE-EccCC
Q psy6570 69 -------TGLNEPYDIALEPLSGRMFW-TELGI 93 (713)
Q Consensus 69 -------~~~~~p~~iavD~~~~~ly~-td~~~ 93 (713)
..+..|-.|++|+. |+||+ +|.+.
T Consensus 426 ~~~~~~~~~f~sPDNL~~d~~-G~LwI~eD~~~ 457 (524)
T PF05787_consen 426 GSNKCDDNGFASPDNLAFDPD-GNLWIQEDGGG 457 (524)
T ss_pred ccCcccCCCcCCCCceEECCC-CCEEEEeCCCC
Confidence 12678999999985 55555 55443
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=95.72 E-value=1.7 Score=42.76 Aligned_cols=184 Identities=10% Similarity=0.020 Sum_probs=114.8
Q ss_pred CCceeEEEccCcc--cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCC-CCCcceEEEcCC
Q psy6570 6 SGNVTRVKREMNL--KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG-LNEPYDIALEPL 82 (713)
Q Consensus 6 ~~~I~~~~~~~~~--~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~-~~~p~~iavD~~ 82 (713)
++.++..|+.+.+ +.+.-.-....++||++.++.| ++-+ ....|...+.-|.-+.++.... -....-+.+.|.
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qi-vSGS---rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~ 159 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQI-VSGS---RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPN 159 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCceEEEEecCCCcee-ecCC---CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCC
Confidence 4455555666543 2234455667889999876666 4666 6778888888887776666554 567888999988
Q ss_pred CCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 83 ~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
....|+...+....+.+-++++-..+.-+.....+-+.+++.|+ +.|-.+-...+.++.-+++-... +.... ....
T Consensus 160 ~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpD-GslcasGgkdg~~~LwdL~~~k~--lysl~-a~~~ 235 (315)
T KOG0279|consen 160 ESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPD-GSLCASGGKDGEAMLWDLNEGKN--LYSLE-AFDI 235 (315)
T ss_pred CCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCC-CCEEecCCCCceEEEEEccCCce--eEecc-CCCe
Confidence 75666655454436777788877666555556667789999965 45555555666777777754432 22221 1233
Q ss_pred ceeeeeeCCeEEEEeCCCCcEEEEcccCCCcceee
Q psy6570 163 PYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVL 197 (713)
Q Consensus 163 p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~ 197 (713)
-.++.+..++.+........|...+...+..+..+
T Consensus 236 v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAATATSIKIWDLESKAVVEEL 270 (315)
T ss_pred EeeEEecCCceeEeeccCCceEEEeccchhhhhhc
Confidence 35555555555444445556777776655544443
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.66 E-value=1.1 Score=44.43 Aligned_cols=147 Identities=14% Similarity=0.238 Sum_probs=78.5
Q ss_pred eEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEE
Q psy6570 30 GVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFN 109 (713)
Q Consensus 30 gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~ 109 (713)
.+++ .++.-|++.. . +-+.+.+......-+++..--..|.--.+-+...+.|.++.... +...+.++...-+
T Consensus 176 ~v~I--SGn~AYvA~~---d-~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg--vlivd~s~~ssp~ 247 (370)
T COG5276 176 DVAI--SGNYAYVAWR---D-GGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG--VLIVDVSGPSSPT 247 (370)
T ss_pred eEEE--ecCeEEEEEe---C-CCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc--eEEEecCCCCCce
Confidence 4555 3567787776 2 33444444333322333221122333333335678888876544 6667777765444
Q ss_pred EEe-CCCCCCeeE-EEeCCCCeEEEEcCCCCcEEEEeCCC-CceeEEEecCCCCccceeeeeeCCeEEEEeCCCCcEEE
Q psy6570 110 LVD-NNIQWPTGI-TIDYPSQRLYWADPKARTIESINLNG-KDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILK 185 (713)
Q Consensus 110 l~~-~~~~~p~gl-avd~~~~~LY~~d~~~~~I~~~~~~g-~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~ 185 (713)
++. -+...|.++ ++-..+.++|++|...+ +..++... ....+..+-.....+..+|.+.++++|++|...+.|.-
T Consensus 248 ~~gsyet~~p~~~s~v~Vs~~~~Yvadga~g-l~~idisnp~spfl~ss~~t~g~~a~gi~ay~~y~yiadkn~g~vV~ 325 (370)
T COG5276 248 VFGSYETSNPVSISTVPVSGEYAYVADGAKG-LPIIDISNPPSPFLSSSLDTAGYQAAGIRAYGNYNYIADKNTGAVVD 325 (370)
T ss_pred EeeccccCCcccccceecccceeeeeccccC-ceeEeccCCCCCchhccccCCCccccceEEecCeeEeccCCceEEEe
Confidence 442 234445554 22334889999996554 22333322 22222222122234678999999999999988665543
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.032 Score=45.07 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=30.5
Q ss_pred EeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeC
Q psy6570 111 VDNNIQWPTGITIDYPSQRLYWADPKARTIESINL 145 (713)
Q Consensus 111 ~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~ 145 (713)
+...+..|+||++|+..+.||+++...+.|..+..
T Consensus 49 va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 49 VASGFSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred eeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 34578999999999999999999999998888764
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.83 Score=49.43 Aligned_cols=124 Identities=16% Similarity=0.161 Sum_probs=76.2
Q ss_pred CeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEc-cCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCe
Q psy6570 51 NNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTE-LGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQR 129 (713)
Q Consensus 51 ~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td-~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~ 129 (713)
.+|++.+++.....+++... ..-...++-|.+.+|.++. ......|+.++++++.+..|.. ....-..=.+.|++.+
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~-g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~-~~gi~~~Ps~spdG~~ 295 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFN-GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTN-GFGINTSPSWSPDGSK 295 (425)
T ss_pred ceEEEEeccCCccceeeccC-CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceeccc-CCccccCccCCCCCCE
Confidence 46888888877776666422 2333455556566666554 3345689999999988766543 2222235567777888
Q ss_pred EEEEcC--CCCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEe
Q psy6570 130 LYWADP--KARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFST 177 (713)
Q Consensus 130 LY~~d~--~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td 177 (713)
||++-. +...|++++.+|+..+.+......-.. -.+..++++|-+..
T Consensus 296 ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~-p~~SpdG~~i~~~~ 344 (425)
T COG0823 296 IVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSN-PVWSPDGDKIVFES 344 (425)
T ss_pred EEEEeCCCCCcceEEECCCCCceeEeeccCCCCcC-ccCCCCCCEEEEEe
Confidence 877743 455799999999887665544221111 22344555555444
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.54 E-value=2 Score=42.33 Aligned_cols=172 Identities=13% Similarity=0.164 Sum_probs=91.7
Q ss_pred CCceeEEEccCcccEEecCCC--CCceE--EEeccCCeEEEeecCCCCCCeEEEEec-CCceEEEEEcC-CCCCcceEEE
Q psy6570 6 SGNVTRVKREMNLKTVLSNLH--DPRGV--AVDWVGKNLYWTDAGGRSSNNIMVSTL-EGRKKRTLLNT-GLNEPYDIAL 79 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~~~~--~p~gl--a~D~~~~~ly~td~~~~~~~~I~~~~~-~G~~~~~l~~~-~~~~p~~iav 79 (713)
++.|..+++.+..++=...+. ....+ ++. .+++||+++. .+.|+.++. +|+..-..... .+..+ .++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~~----~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~ 74 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVASG----DGNLYALDAKTGKVLWRFDLPGPISGA--PVV 74 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEET----TSEEEEEETTTSEEEEEEECSSCGGSG--EEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEcC----CCEEEEEECCCCCEEEEeeccccccce--eee
Confidence 578899998654332222221 22333 442 4689999854 688999997 67543332211 11222 244
Q ss_pred cCCCCcEEEEccCCCCeEEEEe-cCCCCcEEEEeCC-----CCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCC-CCceeE
Q psy6570 80 EPLSGRMFWTELGIKPRISGAS-IDGKNKFNLVDNN-----IQWPTGITIDYPSQRLYWADPKARTIESINLN-GKDRFV 152 (713)
Q Consensus 80 D~~~~~ly~td~~~~~~I~~~~-~dG~~~~~l~~~~-----~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~-g~~~~~ 152 (713)
.++.||+.... . +|+.++ .+|+.+-.+.... +..+..++++ +++||+... .+.|+.+++. |..+-.
T Consensus 75 --~~~~v~v~~~~-~-~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 75 --DGGRVYVGTSD-G-SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTS-SGKLVALDPKTGKLLWK 147 (238)
T ss_dssp --ETTEEEEEETT-S-EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEET-CSEEEEEETTTTEEEEE
T ss_pred --cccccccccce-e-eeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEec-cCcEEEEecCCCcEEEE
Confidence 36788887733 3 788888 6676665532211 2234445555 677877765 6678888864 433222
Q ss_pred EEecCCCCcc--------ceeeeeeCCeEEEEeCCCCcEEEEcccCCC
Q psy6570 153 VYHTEDNGYK--------PYKLEVFEDNLYFSTYRTNNILKINKFGNS 192 (713)
Q Consensus 153 ~~~~~~~~~~--------p~~i~~~~~~ly~td~~~~~i~~~~~~~~~ 192 (713)
.......... ...+.+.++.||++.... .+..++...+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-~~~~~d~~tg~ 194 (238)
T PF13360_consen 148 YPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG-RVVAVDLATGE 194 (238)
T ss_dssp EESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS-SEEEEETTTTE
T ss_pred eecCCCCCCcceeeecccccceEEECCEEEEEcCCC-eEEEEECCCCC
Confidence 2111101111 123334467888886544 35666655444
|
... |
| >KOG3512|consensus | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.049 Score=56.54 Aligned_cols=133 Identities=26% Similarity=0.697 Sum_probs=70.2
Q ss_pred CCCCC-ceeeCCCCCCCCCceeeCCCCcccCCCCccC---CCCCCCCCCEEEc--CCCeeeCCCCCccCCCC---cCC--
Q psy6570 351 PCLNQ-GMCYPDLTHPEPTYKCHCAPSYTGARCESRI---CENKCHNGGTCIA--TTQTCVCPPGFTGDTCQ---QCL-- 419 (713)
Q Consensus 351 ~C~~~-~~C~~~~~~~~~~~~C~C~~G~~g~~C~~~~---C~~~C~~~~~C~~--~~~~C~C~~g~~g~~C~---~C~-- 419 (713)
.|..+ ..|+..... .++|.|.-+-+|+.|+... ...+-.. ++=.. .--.|.|.. .+.+|. |+.
T Consensus 279 KCNgHAs~Cv~d~~~---~ltCdC~HNTaGPdCgrCKpfy~dRPW~r-aT~~~a~~c~ac~Cn~--harrcrfn~Ely~l 352 (592)
T KOG3512|consen 279 KCNGHASRCVMDESS---HLTCDCEHNTAGPDCGRCKPFYYDRPWGR-ATALPANECVACNCNG--HARRCRFNMELYRL 352 (592)
T ss_pred eecCccceeeeccCC---ceEEecccCCCCCCcccccccccCCCccc-cccCCCccccccccch--hhhhcccchhhhcc
Confidence 35444 348766442 5899999999999886421 1111110 00000 001233322 122222 221
Q ss_pred CCCCCCCcEecc---CCCCcccc-CCCCCcCC---------CCccCCCCCC-CCCCeeecCCCCCeecCCCCccCCCCCC
Q psy6570 420 NLKCQNGGVCVN---KTTGLECD-CPKFYYGK---------NCQYSQCKNY-CVNGECSITDSGPKCMCSPGYSGKKCDT 485 (713)
Q Consensus 420 ~~~C~~~~~C~~---~~~~~~C~-C~~G~~g~---------~C~~~~C~~~-~~~~~C~~~~~~~~C~C~~G~~g~~C~~ 485 (713)
+..++ +++|.| ...+..|. |.+||+-+ .|....|.+. ..+.+|..+.| +|.|.+|.+|..|+.
T Consensus 353 Sgr~S-ggvClnCrHnTaGrhChyCreGyyRd~s~pl~hrkaCk~CdChpVGs~gktCNq~tG--qCpCkeGvtG~tCnr 429 (592)
T KOG3512|consen 353 SGRRS-GGVCLNCRHNTAGRHCHYCREGYYRDGSKPLTHRKACKACDCHPVGSAGKTCNQTTG--QCPCKEGVTGLTCNR 429 (592)
T ss_pred cCccc-cceEeecccCCCCcccccccCccccCCCCCCchhhhhhhcCCcccccccccccccCC--cccCCCCCccccccc
Confidence 11222 345542 22345674 99999732 3443344443 34556776666 899999999999886
Q ss_pred ccccCCCCCCcccCCCCccC
Q psy6570 486 CTCLNGDSGPKCMCSPGYSG 505 (713)
Q Consensus 486 ~~C~~~~~~~~C~C~~G~~g 505 (713)
|.+||.-
T Consensus 430 -------------Ca~gyqq 436 (592)
T KOG3512|consen 430 -------------CAPGYQQ 436 (592)
T ss_pred -------------ccchhhc
Confidence 7788863
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=95.30 E-value=1.1 Score=42.86 Aligned_cols=121 Identities=11% Similarity=0.018 Sum_probs=77.0
Q ss_pred CceeEEEccCcc-cEE-ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCC
Q psy6570 7 GNVTRVKREMNL-KTV-LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSG 84 (713)
Q Consensus 7 ~~I~~~~~~~~~-~~~-~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~ 84 (713)
..|++++..+.. ..+ +..-.....+++.|.+.++.+.... ...+|..++++++....+. -...+.|...|.++
T Consensus 39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~--~~~~v~lyd~~~~~i~~~~---~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS--MPAKVTLYDVKGKKIFSFG---TQPRNTISWSPDGR 113 (194)
T ss_pred EEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc--CCcccEEEcCcccEeEeec---CCCceEEEECCCCC
Confidence 345566544422 222 2222347889999988887776531 3458889998866555443 24566899999888
Q ss_pred cEEEEccCC-CCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEc
Q psy6570 85 RMFWTELGI-KPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWAD 134 (713)
Q Consensus 85 ~ly~td~~~-~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d 134 (713)
+|..+..++ .+.|...+.+ ..+.+........+.++++|++.+|..+.
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~--~~~~i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVR--KKKKISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred EEEEEEccCCCcEEEEEECC--CCEEeeccccCcEEEEEEcCCCCEEEEEE
Confidence 888877553 2467777766 44444444445568889998777766655
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=95.10 E-value=2.7 Score=46.90 Aligned_cols=74 Identities=7% Similarity=-0.025 Sum_probs=45.0
Q ss_pred CCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEeCCCCcEEEEcccCC
Q psy6570 117 WPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGN 191 (713)
Q Consensus 117 ~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~ 191 (713)
+-.-||+|+.+..+.-.+...-.|++-++.......+++........+.+...+..|+ +.....+|+..+.+..
T Consensus 437 QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~La-S~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 437 QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLA-SGSWDKTVRIWDIFSS 510 (893)
T ss_pred eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEE-eccccceEEEEEeecc
Confidence 3467899987777766666777788877765555555554332222233445555554 4445567887777655
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.49 Score=52.53 Aligned_cols=164 Identities=14% Similarity=0.092 Sum_probs=90.1
Q ss_pred cCCceeEEEccCcc-c-EEec--CCCCCceEEE---eccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceE
Q psy6570 5 SSGNVTRVKREMNL-K-TVLS--NLHDPRGVAV---DWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDI 77 (713)
Q Consensus 5 ~~~~I~~~~~~~~~-~-~~~~--~~~~p~gla~---D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~i 77 (713)
..|.|..|++.... . +... +--.=+++++ ++.+..+|.+|-+ ....|+++-.+......- .-...
T Consensus 219 ~~GwvvEvdp~~~~~~p~K~tAlGRf~HE~a~v~~~~~~~~vvY~gDD~--~~~~lYkFVs~~~~~~~~------~~~~~ 290 (524)
T PF05787_consen 219 RYGWVVEVDPFDPSSTPVKRTALGRFAHEAAAVVLADPGRVVVYMGDDG--RNGYLYKFVSDKPWDPGD------RAANR 290 (524)
T ss_pred ccceEEEeCCCCCCCCccceeecccccccceeEEeecCCeEEEEEEecC--CCCeEEEEecCCCCCCcc------cchhh
Confidence 34566677665421 1 1122 2223466777 7777789999873 456788777665432110 00001
Q ss_pred EEcCCCCcEEEEccCCCCeEEEEecCCC------------CcEE----------EEeCCCCCCeeEEEeCCCCeEEEEcC
Q psy6570 78 ALEPLSGRMFWTELGIKPRISGASIDGK------------NKFN----------LVDNNIQWPTGITIDYPSQRLYWADP 135 (713)
Q Consensus 78 avD~~~~~ly~td~~~~~~I~~~~~dG~------------~~~~----------l~~~~~~~p~glavd~~~~~LY~~d~ 135 (713)
.+. ..|.||++.+.....+.=+.|.-. ...+ +-.+.+.+|.+|++++.+++||++.+
T Consensus 291 ~ll-~~GtLyaak~~~~g~~~Wv~L~~~~~~l~~~~~~~~~a~v~~~tr~aA~~~GAT~f~RpEgi~~~p~~g~vY~a~T 369 (524)
T PF05787_consen 291 DLL-DEGTLYAAKFNQDGTGEWVPLGHGQGGLTAKNGFADQADVLIETRRAADAVGATPFDRPEGITVNPDDGEVYFALT 369 (524)
T ss_pred hhh-hCCEeceEEECCCCcEEEEECCCcccccccCCCCCChHHhhhhhhhccccCccccccCccCeeEeCCCCEEEEEEe
Confidence 111 356666665443323333322110 0000 11245889999999999999999965
Q ss_pred CCC-------------------cEEEEeCCCC-------ceeEEEec---------------CCCCccceeeeee-CCeE
Q psy6570 136 KAR-------------------TIESINLNGK-------DRFVVYHT---------------EDNGYKPYKLEVF-EDNL 173 (713)
Q Consensus 136 ~~~-------------------~I~~~~~~g~-------~~~~~~~~---------------~~~~~~p~~i~~~-~~~l 173 (713)
... .|+++..++. ...+++.. ...+..|..|.++ .++|
T Consensus 370 ~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~~f~sPDNL~~d~~G~L 449 (524)
T PF05787_consen 370 NNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNKCDDNGFASPDNLAFDPDGNL 449 (524)
T ss_pred cCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccCcccCCCcCCCCceEECCCCCE
Confidence 433 7999988765 22333322 1235678888877 4466
Q ss_pred EEEe
Q psy6570 174 YFST 177 (713)
Q Consensus 174 y~td 177 (713)
|+..
T Consensus 450 wI~e 453 (524)
T PF05787_consen 450 WIQE 453 (524)
T ss_pred EEEe
Confidence 6654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=7.2 Score=43.28 Aligned_cols=159 Identities=9% Similarity=-0.012 Sum_probs=81.6
Q ss_pred CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCC
Q psy6570 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKN 106 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~ 106 (713)
....|++.+..+.++++-. ..+.|.+.++........+.........|++.+ ++.++++-.... .|...++....
T Consensus 127 ~V~~l~f~P~~~~iLaSgs---~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg-~IrIwD~rsg~ 201 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASAG---ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDK-KLNIIDPRDGT 201 (493)
T ss_pred cEEEEEeCcCCCCEEEEEe---CCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCC-EEEEEECCCCc
Confidence 3567888776656666655 567888988875443333333335577899987 455556554444 67777765332
Q ss_pred c-EEEEeCCCCCCeeEEEeCCCCeEEEEc---CCCCcEEEEeCCCCcee-EEEecCCCCccceeee-e--eCCeEEEEeC
Q psy6570 107 K-FNLVDNNIQWPTGITIDYPSQRLYWAD---PKARTIESINLNGKDRF-VVYHTEDNGYKPYKLE-V--FEDNLYFSTY 178 (713)
Q Consensus 107 ~-~~l~~~~~~~p~glavd~~~~~LY~~d---~~~~~I~~~~~~g~~~~-~~~~~~~~~~~p~~i~-~--~~~~ly~td~ 178 (713)
. ..+....-.....+.+.+..+.|+.+- ...+.|...|+...... .+.... ......+. + +...||.+..
T Consensus 202 ~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d--~~~~~~~~~~d~d~~~L~lggk 279 (493)
T PTZ00421 202 IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD--QSSALFIPFFDEDTNLLYIGSK 279 (493)
T ss_pred EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC--CCCceEEEEEcCCCCEEEEEEe
Confidence 2 222111111223455555555555443 22355666666432211 111110 11112122 2 2445666554
Q ss_pred CCCcEEEEcccCCC
Q psy6570 179 RTNNILKINKFGNS 192 (713)
Q Consensus 179 ~~~~i~~~~~~~~~ 192 (713)
+.+.|+.++...+.
T Consensus 280 gDg~Iriwdl~~~~ 293 (493)
T PTZ00421 280 GEGNIRCFELMNER 293 (493)
T ss_pred CCCeEEEEEeeCCc
Confidence 56677777765544
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=1.7 Score=46.90 Aligned_cols=134 Identities=15% Similarity=0.184 Sum_probs=68.6
Q ss_pred CCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCC-C
Q psy6570 37 GKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNN-I 115 (713)
Q Consensus 37 ~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~-~ 115 (713)
++.||++.. .+.+..+++.... ++....+..+..++++ +++||+.+.. ++|+.++..... .+.... +
T Consensus 256 ~~~vy~~~~----~g~l~ald~~tG~--~~W~~~~~~~~~~~~~--~~~vy~~~~~--g~l~ald~~tG~--~~W~~~~~ 323 (394)
T PRK11138 256 GGVVYALAY----NGNLVALDLRSGQ--IVWKREYGSVNDFAVD--GGRIYLVDQN--DRVYALDTRGGV--ELWSQSDL 323 (394)
T ss_pred CCEEEEEEc----CCeEEEEECCCCC--EEEeecCCCccCcEEE--CCEEEEEcCC--CeEEEEECCCCc--EEEccccc
Confidence 466777654 3566666654322 2233333444556664 6788888743 268877775332 122111 1
Q ss_pred --CCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEeCCCCcEEEEc
Q psy6570 116 --QWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKIN 187 (713)
Q Consensus 116 --~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~~~ 187 (713)
......++. +++||+.+. .+.|+.++.+......-..... ........+.+++||+.+. .+.|+.++
T Consensus 324 ~~~~~~sp~v~--~g~l~v~~~-~G~l~~ld~~tG~~~~~~~~~~-~~~~s~P~~~~~~l~v~t~-~G~l~~~~ 392 (394)
T PRK11138 324 LHRLLTAPVLY--NGYLVVGDS-EGYLHWINREDGRFVAQQKVDS-SGFLSEPVVADDKLLIQAR-DGTVYAIT 392 (394)
T ss_pred CCCcccCCEEE--CCEEEEEeC-CCEEEEEECCCCCEEEEEEcCC-CcceeCCEEECCEEEEEeC-CceEEEEe
Confidence 111233343 688988874 4678888864332211111110 0111223356789999864 45666654
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.89 E-value=1.2 Score=45.86 Aligned_cols=137 Identities=17% Similarity=0.225 Sum_probs=82.5
Q ss_pred cCCceeEEEccC--cccEE----ecCCCCC--ceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCC-----
Q psy6570 5 SSGNVTRVKREM--NLKTV----LSNLHDP--RGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGL----- 71 (713)
Q Consensus 5 ~~~~I~~~~~~~--~~~~~----~~~~~~p--~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~----- 71 (713)
.+|++..+.++. +.... ......| .--+++..++++||.-. .+.|+.+++.|...+..-.-.+
T Consensus 155 ~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy----~G~v~~~dlsg~~~~~~~~~~~~t~~e 230 (342)
T PF06433_consen 155 GDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY----EGNVYSADLSGDSAKFGKPWSLLTDAE 230 (342)
T ss_dssp TTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBT----TSEEEEEEETTSSEEEEEEEESS-HHH
T ss_pred cCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEec----CCEEEEEeccCCcccccCcccccCccc
Confidence 367888887773 32211 2222222 22334456678888765 7899999999987655432111
Q ss_pred ----CCcce---EEEcCCCCcEEEEccC----CC----CeEEEEecCCCCcEEEEeCCCCCC-eeEEEeCCCC-eEEEEc
Q psy6570 72 ----NEPYD---IALEPLSGRMFWTELG----IK----PRISGASIDGKNKFNLVDNNIQWP-TGITIDYPSQ-RLYWAD 134 (713)
Q Consensus 72 ----~~p~~---iavD~~~~~ly~td~~----~~----~~I~~~~~dG~~~~~l~~~~~~~p-~glavd~~~~-~LY~~d 134 (713)
=+|.| +|+++..++||+.... .+ ..||++++....|..-+ .+..| .+|+|..+.+ +||-++
T Consensus 231 ~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri--~l~~~~~Si~Vsqd~~P~L~~~~ 308 (342)
T PF06433_consen 231 KADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARI--PLEHPIDSIAVSQDDKPLLYALS 308 (342)
T ss_dssp HHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEE--EEEEEESEEEEESSSS-EEEEEE
T ss_pred cccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEE--eCCCccceEEEccCCCcEEEEEc
Confidence 12443 8999999999997421 11 36888888765543333 23223 3788876655 677677
Q ss_pred CCCCcEEEEeCCC
Q psy6570 135 PKARTIESINLNG 147 (713)
Q Consensus 135 ~~~~~I~~~~~~g 147 (713)
...+.|..+|...
T Consensus 309 ~~~~~l~v~D~~t 321 (342)
T PF06433_consen 309 AGDGTLDVYDAAT 321 (342)
T ss_dssp TTTTEEEEEETTT
T ss_pred CCCCeEEEEeCcC
Confidence 7778888888643
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=94.85 E-value=4.8 Score=40.29 Aligned_cols=182 Identities=13% Similarity=0.070 Sum_probs=99.5
Q ss_pred cCCceeEEEccCc--ccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCC
Q psy6570 5 SSGNVTRVKREMN--LKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPL 82 (713)
Q Consensus 5 ~~~~I~~~~~~~~--~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~ 82 (713)
.++.|+.++.... .+++...-..+.-+.|-.....+..+-. +....|...++..+.....+..--...+.|.+.|.
T Consensus 34 ~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt--k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~ 111 (311)
T KOG1446|consen 34 EDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST--KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPK 111 (311)
T ss_pred CCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC--CCCCceEEEEeecCceEEEcCCCCceEEEEEecCC
Confidence 3455666654432 2333333344555555443333322222 24567888887654433333333477889999997
Q ss_pred CCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCC----CCceeEEEecCC
Q psy6570 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLN----GKDRFVVYHTED 158 (713)
Q Consensus 83 ~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~----g~~~~~~~~~~~ 158 (713)
+ ..|.+.+..+ .|..-++.-..-+.++ .+..+.-.|+|| ++.||.+-.+...|..+|+. |...+..+....
T Consensus 112 ~-d~FlS~S~D~-tvrLWDlR~~~cqg~l--~~~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~ 186 (311)
T KOG1446|consen 112 D-DTFLSSSLDK-TVRLWDLRVKKCQGLL--NLSGRPIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDND 186 (311)
T ss_pred C-CeEEecccCC-eEEeeEecCCCCceEE--ecCCCcceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCC
Confidence 6 7888776555 6666666655555554 344556789995 66777766666688887753 222222222111
Q ss_pred CCccceeee--eeCCeEEEEeCCCCcEEEEcccCCCcce
Q psy6570 159 NGYKPYKLE--VFEDNLYFSTYRTNNILKINKFGNSDFN 195 (713)
Q Consensus 159 ~~~~p~~i~--~~~~~ly~td~~~~~i~~~~~~~~~~~~ 195 (713)
...-..|. .++..|.++. ..+.++.++.+.|....
T Consensus 187 -~~ew~~l~FS~dGK~iLlsT-~~s~~~~lDAf~G~~~~ 223 (311)
T KOG1446|consen 187 -EAEWTDLEFSPDGKSILLST-NASFIYLLDAFDGTVKS 223 (311)
T ss_pred -ccceeeeEEcCCCCEEEEEe-CCCcEEEEEccCCcEee
Confidence 12223333 3455566654 44567777777665433
|
|
| >smart00051 DSL delta serrate ligand | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.038 Score=41.72 Aligned_cols=47 Identities=21% Similarity=0.416 Sum_probs=34.0
Q ss_pred ceeeCCCCCcCCCCCcCCCCCCCCCCCCCCCeEecCCCCcceeecCCCcccCCC
Q psy6570 573 PSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITC 626 (713)
Q Consensus 573 ~~C~C~~G~~G~~C~~~~~~~~C~~~C~~~g~C~~~~~g~~~C~C~~G~~G~~C 626 (713)
+.=.|.++|.|..|.... .+.+.+.++..|... ..|+|.+||+|..|
T Consensus 17 ~rv~C~~~~yG~~C~~~C---~~~~d~~~~~~Cd~~----G~~~C~~Gw~G~~C 63 (63)
T smart00051 17 IRVTCDENYYGEGCNKFC---RPRDDFFGHYTCDEN----GNKGCLEGWMGPYC 63 (63)
T ss_pred EEeeCCCCCcCCccCCEe---CcCccccCCccCCcC----CCEecCCCCcCCCC
Confidence 456799999999997541 123446677888532 45999999999876
|
|
| >PF12662 cEGF: Complement Clr-like EGF-like | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.026 Score=33.18 Aligned_cols=18 Identities=33% Similarity=1.008 Sum_probs=15.1
Q ss_pred CceeeCCCCCc----CCCCCcC
Q psy6570 572 KPSCKCLPPYS----GKQCTER 589 (713)
Q Consensus 572 ~~~C~C~~G~~----G~~C~~~ 589 (713)
+|+|.|++||. |+.|+++
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DI 22 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDI 22 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccC
Confidence 58999999997 6678775
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.71 E-value=1.5 Score=47.54 Aligned_cols=136 Identities=13% Similarity=0.149 Sum_probs=83.2
Q ss_pred CceeEEEccCcc-cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCc
Q psy6570 7 GNVTRVKREMNL-KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGR 85 (713)
Q Consensus 7 ~~I~~~~~~~~~-~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ 85 (713)
.+|+..++++.. .++++.-..-...++-+.+.+|.++.... ..-.|++++++++....|.... ..-..=.+.|....
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rd-g~~~iy~~dl~~~~~~~Lt~~~-gi~~~Ps~spdG~~ 295 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRD-GSPDIYLMDLDGKNLPRLTNGF-GINTSPSWSPDGSK 295 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCC-CCccEEEEcCCCCcceecccCC-ccccCccCCCCCCE
Confidence 457888888644 44445444445566777777877776532 4567999999998866644321 11113334455556
Q ss_pred EEE-EccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCc--EEEEeC
Q psy6570 86 MFW-TELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKART--IESINL 145 (713)
Q Consensus 86 ly~-td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~--I~~~~~ 145 (713)
|+| +|.+..++|++++++|+..+.+... ......-.+++++++|-+.....+. |...++
T Consensus 296 ivf~Sdr~G~p~I~~~~~~g~~~~riT~~-~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~ 357 (425)
T COG0823 296 IVFTSDRGGRPQIYLYDLEGSQVTRLTFS-GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDL 357 (425)
T ss_pred EEEEeCCCCCcceEEECCCCCceeEeecc-CCCCcCccCCCCCCEEEEEeccCCceeeEEecc
Confidence 555 5666667999999999988666542 3333355677667766665533333 444444
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=94.71 E-value=1.5 Score=46.37 Aligned_cols=173 Identities=8% Similarity=0.041 Sum_probs=102.8
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCC-CCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCC
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG-LNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKN 106 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~-~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~ 106 (713)
..++.+.|... |++..+ ..+.|.+..+..+.+.+-+..+ -...+-|-+.+..+.|..+-.... .|..-+..|..
T Consensus 124 vt~v~YN~~De--yiAsvs--~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G-~VtlwDv~g~s 198 (673)
T KOG4378|consen 124 VTYVDYNNTDE--YIASVS--DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKG-AVTLWDVQGMS 198 (673)
T ss_pred eEEEEecCCcc--eeEEec--cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCC-eEEEEeccCCC
Confidence 34555555443 333321 3456666666655544333322 222345667777777777654433 67777777765
Q ss_pred cEEEEeCC-CCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccce-eeeee-CCeEEEEeCCCCcE
Q psy6570 107 KFNLVDNN-IQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPY-KLEVF-EDNLYFSTYRTNNI 183 (713)
Q Consensus 107 ~~~l~~~~-~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~-~i~~~-~~~ly~td~~~~~i 183 (713)
..--+... .....||.+.|.+..|+++-....+|+.+|........-+. ..+|+ .+++. .+.++.+-..+++|
T Consensus 199 p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~----y~~Plstvaf~~~G~~L~aG~s~G~~ 274 (673)
T KOG4378|consen 199 PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT----YSHPLSTVAFSECGTYLCAGNSKGEL 274 (673)
T ss_pred cccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee----ecCCcceeeecCCceEEEeecCCceE
Confidence 54433322 33347999999999999999888999998875432211111 23554 45554 45666777788999
Q ss_pred EEEcccCCC-cceeeeccccccccEEE
Q psy6570 184 LKINKFGNS-DFNVLANNLNRASDVLI 209 (713)
Q Consensus 184 ~~~~~~~~~-~~~~~~~~~~~~~~i~v 209 (713)
+.++..+.. +++++...-..++.|++
T Consensus 275 i~YD~R~~k~Pv~v~sah~~sVt~vaf 301 (673)
T KOG4378|consen 275 IAYDMRSTKAPVAVRSAHDASVTRVAF 301 (673)
T ss_pred EEEecccCCCCceEeeecccceeEEEe
Confidence 999987653 45555554444555543
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=94.69 E-value=2.6 Score=44.42 Aligned_cols=178 Identities=9% Similarity=0.005 Sum_probs=96.2
Q ss_pred EEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEE
Q psy6570 31 VAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNL 110 (713)
Q Consensus 31 la~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l 110 (713)
+++-|...--|+.-.+ ..+++...+.-....++.+ .+...-++.|||.+..=|.+..-.. .|++..++++....-
T Consensus 280 ~slKWnk~G~yilS~~--vD~ttilwd~~~g~~~q~f--~~~s~~~lDVdW~~~~~F~ts~td~-~i~V~kv~~~~P~~t 354 (524)
T KOG0273|consen 280 FSLKWNKKGTYILSGG--VDGTTILWDAHTGTVKQQF--EFHSAPALDVDWQSNDEFATSSTDG-CIHVCKVGEDRPVKT 354 (524)
T ss_pred EEEEEcCCCCEEEecc--CCccEEEEeccCceEEEee--eeccCCccceEEecCceEeecCCCc-eEEEEEecCCCccee
Confidence 4444544444443332 3445555554332333322 1333347889998888888765433 789888888776655
Q ss_pred EeCCCCCCeeEEEeCCCCeEEEE-cCCCCcEEEEeCCCCc-------eeEEEecCCCCccceeeeeeCC-eEEEEeCCCC
Q psy6570 111 VDNNIQWPTGITIDYPSQRLYWA-DPKARTIESINLNGKD-------RFVVYHTEDNGYKPYKLEVFED-NLYFSTYRTN 181 (713)
Q Consensus 111 ~~~~~~~p~glavd~~~~~LY~~-d~~~~~I~~~~~~g~~-------~~~~~~~~~~~~~p~~i~~~~~-~ly~td~~~~ 181 (713)
+...-+..++|-+++....|--+ |-.+-+||.+..++.. +.+.... -....|..=-...+ .|.|+ ....
T Consensus 355 ~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~-wsp~g~v~~n~~~~~~l~sa-s~ds 432 (524)
T KOG0273|consen 355 FIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIK-WSPTGPVTSNPNMNLMLASA-SFDS 432 (524)
T ss_pred eecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEe-ecCCCCccCCCcCCceEEEe-ecCC
Confidence 54466677899999655444433 3345567765544321 1111100 00111111111122 33443 4556
Q ss_pred cEEEEcccCCCcceeeeccccccccEEEEeeccc
Q psy6570 182 NILKINKFGNSDFNVLANNLNRASDVLILQENKQ 215 (713)
Q Consensus 182 ~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q 215 (713)
.|...+...+.....+..+...++.++..+..++
T Consensus 433 tV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~y 466 (524)
T KOG0273|consen 433 TVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRY 466 (524)
T ss_pred eEEEEEccCCceeEeeccCCCceEEEEecCCCcE
Confidence 6777777777777777777777777777666555
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.33 Score=49.07 Aligned_cols=207 Identities=10% Similarity=0.061 Sum_probs=113.3
Q ss_pred ccCCceeEEEccCcc--cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCC-----------
Q psy6570 4 ISSGNVTRVKREMNL--KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG----------- 70 (713)
Q Consensus 4 ~~~~~I~~~~~~~~~--~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~----------- 70 (713)
..+|.|...++.... .++....+-..||.+|. +..+++.|. ..|-+..++|....++....
T Consensus 86 s~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdD-----KtvK~wk~~~~p~~tilg~s~~~gIdh~~~~ 159 (433)
T KOG0268|consen 86 SCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDD-----KTVKQWKIDGPPLHTILGKSVYLGIDHHRKN 159 (433)
T ss_pred ccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCC-----cceeeeeccCCcceeeecccccccccccccc
Confidence 457788888888754 44445555678999985 677777765 33333333333333322110
Q ss_pred ---------------------------CCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCC-cEEEEeCCCCCCeeEE
Q psy6570 71 ---------------------------LNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKN-KFNLVDNNIQWPTGIT 122 (713)
Q Consensus 71 ---------------------------~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~~~~p~gla 122 (713)
......+.+.|..-.|..+-.... .|...++.-.. .+.++. -..+++|+
T Consensus 160 ~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDr-sIvLyD~R~~~Pl~KVi~--~mRTN~Is 236 (433)
T KOG0268|consen 160 SVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDR-SIVLYDLRQASPLKKVIL--TMRTNTIC 236 (433)
T ss_pred ccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCC-ceEEEecccCCccceeee--ecccccee
Confidence 111223333333333333332222 34444443222 222221 23579999
Q ss_pred EeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceee-ecc
Q psy6570 123 IDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVL-ANN 200 (713)
Q Consensus 123 vd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~-~~~ 200 (713)
+.| +...|++-.....++.+|+---.+.+-... ......+.+++. -+.-|++......|..+....+....+. ...
T Consensus 237 wnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~-dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR 314 (433)
T KOG0268|consen 237 WNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHK-DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR 314 (433)
T ss_pred cCc-cccceeeccccccceehhhhhhcccchhhc-ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh
Confidence 998 899999988888899988754332221111 112333444443 4556788777777777766555444433 334
Q ss_pred ccccccEEEEeeccccCCccC
Q psy6570 201 LNRASDVLILQENKQAHNVTN 221 (713)
Q Consensus 201 ~~~~~~i~v~~~~~q~~~~~~ 221 (713)
..+++.++..+++++.-+.+|
T Consensus 315 Mq~V~~Vk~S~Dskyi~SGSd 335 (433)
T KOG0268|consen 315 MQHVFCVKYSMDSKYIISGSD 335 (433)
T ss_pred hheeeEEEEeccccEEEecCC
Confidence 666777777777776544444
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=94.56 E-value=1.4 Score=44.74 Aligned_cols=169 Identities=11% Similarity=0.094 Sum_probs=97.8
Q ss_pred EecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEE
Q psy6570 21 VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGA 100 (713)
Q Consensus 21 ~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~ 100 (713)
+.-.++..+.|||||. +..|.+-+ ....|-+.|+.....+..+..-....++++|.+..-+||-+..+ . .|.--
T Consensus 147 i~gHlgWVr~vavdP~-n~wf~tgs---~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ged-k-~VKCw 220 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPG-NEWFATGS---ADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGED-K-QVKCW 220 (460)
T ss_pred hhhccceEEEEeeCCC-ceeEEecC---CCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCC-C-eeEEE
Confidence 3345677899999987 66777766 67788899988766655554456789999998877777766433 2 45555
Q ss_pred ecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCcccee-eeee--CCeEEEEe
Q psy6570 101 SIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYK-LEVF--EDNLYFST 177 (713)
Q Consensus 101 ~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~-i~~~--~~~ly~td 177 (713)
++.-.....-....+..-..|++.|.-+.|+ +-.....|+.-|+.......++.. ...|.. +... +..|| +-
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~-t~grDst~RvWDiRtr~~V~~l~G---H~~~V~~V~~~~~dpqvi-t~ 295 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLV-TGGRDSTIRVWDIRTRASVHVLSG---HTNPVASVMCQPTDPQVI-TG 295 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEE-ecCCcceEEEeeecccceEEEecC---CCCcceeEEeecCCCceE-Ee
Confidence 6543322222233556667788887665555 443444444444433333222222 223322 2221 34444 33
Q ss_pred CCCCcEEEEcccCCCcceeeecc
Q psy6570 178 YRTNNILKINKFGNSDFNVLANN 200 (713)
Q Consensus 178 ~~~~~i~~~~~~~~~~~~~~~~~ 200 (713)
.....|.-.+...+..+..+...
T Consensus 296 S~D~tvrlWDl~agkt~~tlt~h 318 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAGKTMITLTHH 318 (460)
T ss_pred cCCceEEEeeeccCceeEeeecc
Confidence 44556766676666665555444
|
|
| >COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=94.48 E-value=2.8 Score=40.69 Aligned_cols=112 Identities=16% Similarity=0.138 Sum_probs=59.6
Q ss_pred ecCCCCCceEEEe--ccCCeEEEeecCCCCCCeEEEEec----CCceEEEEEcCC--CCCcceEEEcCCCCcEEEEccCC
Q psy6570 22 LSNLHDPRGVAVD--WVGKNLYWTDAGGRSSNNIMVSTL----EGRKKRTLLNTG--LNEPYDIALEPLSGRMFWTELGI 93 (713)
Q Consensus 22 ~~~~~~p~gla~D--~~~~~ly~td~~~~~~~~I~~~~~----~G~~~~~l~~~~--~~~p~~iavD~~~~~ly~td~~~ 93 (713)
.+.+..|.||++- ++++.+|+--.+ ..+.|..+.+ +|+....+++.- -.+-.||++|...|.||.++...
T Consensus 149 ss~~s~~YGl~lyrs~ktgd~yvfV~~--~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG~LYIaeEdv 226 (364)
T COG4247 149 SSSSSSAYGLALYRSPKTGDYYVFVNR--RQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETGFLYIAEEDV 226 (364)
T ss_pred ccCcccceeeEEEecCCcCcEEEEEec--CCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccceEEEeeccc
Confidence 4567778888875 344444443221 2355554443 344444444321 24667999999999999998543
Q ss_pred CCeEEEEecC--CCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCC
Q psy6570 94 KPRISGASID--GKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKAR 138 (713)
Q Consensus 94 ~~~I~~~~~d--G~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~ 138 (713)
.||+...+ +.....++. .+.--..|+=|...-.||+...+.+
T Consensus 227 --aiWK~~Aep~~G~~g~~id-r~~d~~~LtdDvEGltiYy~pnGkG 270 (364)
T COG4247 227 --AIWKYEAEPNRGNTGRLID-RIKDLSYLTDDVEGLTIYYGPNGKG 270 (364)
T ss_pred --eeeecccCCCCCCccchhh-hhcCchhhcccccccEEEEcCCCcE
Confidence 58887654 222222221 1111133555544445666554433
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=94.35 E-value=2.4 Score=44.50 Aligned_cols=144 Identities=12% Similarity=0.132 Sum_probs=75.3
Q ss_pred CCceeEEEccCcccEEecCC--CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCC-cce-EEEcC
Q psy6570 6 SGNVTRVKREMNLKTVLSNL--HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNE-PYD-IALEP 81 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~~~--~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~-p~~-iavD~ 81 (713)
...++.+++.+.+.+=++.. ....|..+-+.++.||+... ...|.++++++...++|....-.. ..+ .+++.
T Consensus 59 ~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~----~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~ 134 (386)
T PF14583_consen 59 NRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN----GRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANS 134 (386)
T ss_dssp S-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET----TTEEEEEETTT--EEEEEE--TTEEEEEEEEE-T
T ss_pred CcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC----CCeEEEEECCcCcEEEEEECCcccccccceeeCC
Confidence 45677888887543223322 23345666678888876654 368899999988776665433111 112 33343
Q ss_pred CCCcEEEE------cc---------------CCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCe-EEEEc-----
Q psy6570 82 LSGRMFWT------EL---------------GIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQR-LYWAD----- 134 (713)
Q Consensus 82 ~~~~ly~t------d~---------------~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~-LY~~d----- 134 (713)
++.+++. |+ ....+|.++++.+..+++++... .+-.-+-+.|.... |-+..
T Consensus 135 -d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~wlgH~~fsP~dp~li~fCHEGpw~ 212 (386)
T PF14583_consen 135 -DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-DWLGHVQFSPTDPTLIMFCHEGPWD 212 (386)
T ss_dssp -TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S-EEEEEEETTEEEEEEEEE-S-TT
T ss_pred -CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-ccccCcccCCCCCCEEEEeccCCcc
Confidence 3444432 11 11247999999988888887643 34456777766543 44432
Q ss_pred CCCCcEEEEeCCCCceeEEEe
Q psy6570 135 PKARTIESINLNGKDRFVVYH 155 (713)
Q Consensus 135 ~~~~~I~~~~~~g~~~~~~~~ 155 (713)
....|||.++.||++...+..
T Consensus 213 ~Vd~RiW~i~~dg~~~~~v~~ 233 (386)
T PF14583_consen 213 LVDQRIWTINTDGSNVKKVHR 233 (386)
T ss_dssp TSS-SEEEEETTS---EESS-
T ss_pred eeceEEEEEEcCCCcceeeec
Confidence 234699999999998877753
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=11 Score=45.00 Aligned_cols=153 Identities=8% Similarity=-0.026 Sum_probs=83.1
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCc
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNK 107 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~ 107 (713)
..++++.+..+.+..+-. ..+.|.+.++........+.........|++++.++.++++-.... .|...++.....
T Consensus 535 v~~l~~~~~~~~~las~~---~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg-~v~iWd~~~~~~ 610 (793)
T PLN00181 535 LSGICWNSYIKSQVASSN---FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG-SVKLWSINQGVS 610 (793)
T ss_pred eeeEEeccCCCCEEEEEe---CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCC-EEEEEECCCCcE
Confidence 455666544334334443 4678888887754433333233355778999877777777765444 677767654333
Q ss_pred EEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCce--eEEEecCCCCccceeeeeeCCeEEEEeCCCCcEEE
Q psy6570 108 FNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDR--FVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILK 185 (713)
Q Consensus 108 ~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~--~~~~~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~ 185 (713)
...+.. ......+++.+..+.++++-...+.|...++..... ..+... ...-..+.+..+..+++-...+.|..
T Consensus 611 ~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h---~~~V~~v~f~~~~~lvs~s~D~~iki 686 (793)
T PLN00181 611 IGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH---SKTVSYVRFVDSSTLVSSSTDNTLKL 686 (793)
T ss_pred EEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC---CCCEEEEEEeCCCEEEEEECCCEEEE
Confidence 222222 234456677555666666666777888888754321 122111 11223444444445555555556665
Q ss_pred Ecc
Q psy6570 186 INK 188 (713)
Q Consensus 186 ~~~ 188 (713)
++.
T Consensus 687 Wd~ 689 (793)
T PLN00181 687 WDL 689 (793)
T ss_pred EeC
Confidence 554
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.14 Score=41.35 Aligned_cols=49 Identities=27% Similarity=0.299 Sum_probs=38.4
Q ss_pred CceeEEEccCcccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecC
Q psy6570 7 GNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE 59 (713)
Q Consensus 7 ~~I~~~~~~~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~ 59 (713)
+.|.-++.. +.++++.++..|.||++|+.++.||+++. ..+.|.++..+
T Consensus 36 ~~Vvyyd~~-~~~~va~g~~~aNGI~~s~~~k~lyVa~~---~~~~I~vy~~~ 84 (86)
T PF01731_consen 36 GNVVYYDGK-EVKVVASGFSFANGIAISPDKKYLYVASS---LAHSIHVYKRH 84 (86)
T ss_pred ceEEEEeCC-EeEEeeccCCCCceEEEcCCCCEEEEEec---cCCeEEEEEec
Confidence 444445543 34677899999999999999999999999 77888887653
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=94.19 E-value=6.6 Score=39.98 Aligned_cols=178 Identities=10% Similarity=0.072 Sum_probs=109.4
Q ss_pred ccCCceeEEEccCcccEE---ecCCCCCceEEEeccCCeEEEeecCCCC--------------CCeEEEE-ecCCceEEE
Q psy6570 4 ISSGNVTRVKREMNLKTV---LSNLHDPRGVAVDWVGKNLYWTDAGGRS--------------SNNIMVS-TLEGRKKRT 65 (713)
Q Consensus 4 ~~~~~I~~~~~~~~~~~~---~~~~~~p~gla~D~~~~~ly~td~~~~~--------------~~~I~~~-~~~G~~~~~ 65 (713)
...|.|-..+.....+.+ .+.-..|+-|.+.+.+..|.|++.+... .-.|.++ ..+|+....
T Consensus 74 ~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q 153 (305)
T PF07433_consen 74 TGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ 153 (305)
T ss_pred CCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee
Confidence 346677777777433333 4566679999999988899999876521 1223344 445655544
Q ss_pred EEc-CC--CCCcceEEEcCCCCcEEEEccCC------CCeEEEEecCCCCcEEEEeC------C-CCCCeeEEEeCCCCe
Q psy6570 66 LLN-TG--LNEPYDIALEPLSGRMFWTELGI------KPRISGASIDGKNKFNLVDN------N-IQWPTGITIDYPSQR 129 (713)
Q Consensus 66 l~~-~~--~~~p~~iavD~~~~~ly~td~~~------~~~I~~~~~dG~~~~~l~~~------~-~~~p~glavd~~~~~ 129 (713)
... .. ....+-|+++. +|.+.+..... .+-|...+.++. . .++.. . -++.-.||++...+.
T Consensus 154 ~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~-~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ 230 (305)
T PF07433_consen 154 VELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGA-L-RLLPAPEEQWRRLNGYIGSIAADRDGRL 230 (305)
T ss_pred eecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCc-c-eeccCChHHHHhhCCceEEEEEeCCCCE
Confidence 322 11 23578899996 57776664221 233444444433 2 22221 1 256788999988888
Q ss_pred EEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEeCCCCcEEEEccc
Q psy6570 130 LYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 130 LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~ 189 (713)
|.++-+..+++..++.+.... +... .+...-||+...+.+.|+ .+.+.++++...
T Consensus 231 ia~tsPrGg~~~~~d~~tg~~--~~~~--~l~D~cGva~~~~~f~~s-sG~G~~~~~~~~ 285 (305)
T PF07433_consen 231 IAVTSPRGGRVAVWDAATGRL--LGSV--PLPDACGVAPTDDGFLVS-SGQGQLIRLSPD 285 (305)
T ss_pred EEEECCCCCEEEEEECCCCCE--eecc--ccCceeeeeecCCceEEe-CCCccEEEccCc
Confidence 999999999999986543322 2211 366778899886664444 566777777654
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=94.19 E-value=3.3 Score=40.43 Aligned_cols=67 Identities=21% Similarity=0.185 Sum_probs=44.4
Q ss_pred CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecC
Q psy6570 24 NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASID 103 (713)
Q Consensus 24 ~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~d 103 (713)
+-..-.-+|+|+.+++|||-.. -..||.-.- .++ .+ -+++--.++.|||-+..+...+|.+..-
T Consensus 29 gSHs~~~~avd~~sG~~~We~i---lg~RiE~sa-------~vv-gd-----fVV~GCy~g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 29 GSHSGIVIAVDPQSGNLIWEAI---LGVRIECSA-------IVV-GD-----FVVLGCYSGGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred ecCCceEEEecCCCCcEEeehh---hCceeeeee-------EEE-CC-----EEEEEEccCcEEEEEecchhheeeeeeh
Confidence 3344456899999999999776 445554321 112 11 1666668899999998877678877655
Q ss_pred CCC
Q psy6570 104 GKN 106 (713)
Q Consensus 104 G~~ 106 (713)
++.
T Consensus 93 ~~v 95 (354)
T KOG4649|consen 93 ETV 95 (354)
T ss_pred hhh
Confidence 543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=93.93 E-value=4.5 Score=43.28 Aligned_cols=132 Identities=13% Similarity=0.107 Sum_probs=64.9
Q ss_pred CCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeC-CC
Q psy6570 37 GKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDN-NI 115 (713)
Q Consensus 37 ~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~-~~ 115 (713)
++.||++.. .+.+..+++.... ++..........++++ +++||+.+.. +.|+.++++.... +... .+
T Consensus 241 ~~~vy~~~~----~g~l~a~d~~tG~--~~W~~~~~~~~~p~~~--~~~vyv~~~~--G~l~~~d~~tG~~--~W~~~~~ 308 (377)
T TIGR03300 241 GGQVYAVSY----QGRVAALDLRSGR--VLWKRDASSYQGPAVD--DNRLYVTDAD--GVVVALDRRSGSE--LWKNDEL 308 (377)
T ss_pred CCEEEEEEc----CCEEEEEECCCCc--EEEeeccCCccCceEe--CCEEEEECCC--CeEEEEECCCCcE--EEccccc
Confidence 456676654 4566667764322 1222222334455554 6788887632 3688887753221 1111 11
Q ss_pred C--CCeeEEEeCCCCeEEEEcCCCCcEEEEeCC-CCceeEEEecCCCCccceeeeeeCCeEEEEeCCCCcEEEE
Q psy6570 116 Q--WPTGITIDYPSQRLYWADPKARTIESINLN-GKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKI 186 (713)
Q Consensus 116 ~--~p~glavd~~~~~LY~~d~~~~~I~~~~~~-g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~~ 186 (713)
. .....++. +++||+.+ ..+.|+.++.+ |..+-.+..... .......+.+++||+... .+.|+.+
T Consensus 309 ~~~~~ssp~i~--g~~l~~~~-~~G~l~~~d~~tG~~~~~~~~~~~--~~~~sp~~~~~~l~v~~~-dG~l~~~ 376 (377)
T TIGR03300 309 KYRQLTAPAVV--GGYLVVGD-FEGYLHWLSREDGSFVARLKTDGS--GIASPPVVVGDGLLVQTR-DGDLYAF 376 (377)
T ss_pred cCCccccCEEE--CCEEEEEe-CCCEEEEEECCCCCEEEEEEcCCC--ccccCCEEECCEEEEEeC-CceEEEe
Confidence 1 11222343 57888876 34678888764 433322221110 111222455678888754 3455544
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=93.84 E-value=1.8 Score=45.38 Aligned_cols=116 Identities=16% Similarity=0.232 Sum_probs=61.7
Q ss_pred CeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCC
Q psy6570 38 KNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQW 117 (713)
Q Consensus 38 ~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~ 117 (713)
..||.++.. ....++.++|+....+.|.........|..+.+.++.|||...+ . +|++++++....++|....-.+
T Consensus 49 kllF~s~~d--g~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~-~-~l~~vdL~T~e~~~vy~~p~~~ 124 (386)
T PF14583_consen 49 KLLFASDFD--GNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG-R-SLRRVDLDTLEERVVYEVPDDW 124 (386)
T ss_dssp EEEEEE-TT--SS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT-T-EEEEEETTT--EEEEEE--TTE
T ss_pred EEEEEeccC--CCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC-C-eEEEEECCcCcEEEEEECCccc
Confidence 345556642 46779999999988888876433334466666788888765422 3 7999999988777766433222
Q ss_pred -CeeEE-EeCCCCeEEEE-c---------------------CCCCcEEEEeCCCCceeEEEecCC
Q psy6570 118 -PTGIT-IDYPSQRLYWA-D---------------------PKARTIESINLNGKDRFVVYHTED 158 (713)
Q Consensus 118 -p~gla-vd~~~~~LY~~-d---------------------~~~~~I~~~~~~g~~~~~~~~~~~ 158 (713)
..|-. ++. +.++++. . .-..+|.++++.+..++++.....
T Consensus 125 ~g~gt~v~n~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~ 188 (386)
T PF14583_consen 125 KGYGTWVANS-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD 188 (386)
T ss_dssp EEEEEEEE-T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS
T ss_pred ccccceeeCC-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc
Confidence 12222 343 3344432 1 012379999999888888876644
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=5.4 Score=43.02 Aligned_cols=103 Identities=9% Similarity=0.086 Sum_probs=55.7
Q ss_pred CCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 83 ~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
++.||++... +.++.+++.... ++....+..+..++++ +++||+.+. .++|+.++...... +..........
T Consensus 256 ~~~vy~~~~~--g~l~ald~~tG~--~~W~~~~~~~~~~~~~--~~~vy~~~~-~g~l~ald~~tG~~-~W~~~~~~~~~ 327 (394)
T PRK11138 256 GGVVYALAYN--GNLVALDLRSGQ--IVWKREYGSVNDFAVD--GGRIYLVDQ-NDRVYALDTRGGVE-LWSQSDLLHRL 327 (394)
T ss_pred CCEEEEEEcC--CeEEEEECCCCC--EEEeecCCCccCcEEE--CCEEEEEcC-CCeEEEEECCCCcE-EEcccccCCCc
Confidence 5677776643 256666654221 2333334444456665 789998874 56788888754322 11111100111
Q ss_pred ceeeeeeCCeEEEEeCCCCcEEEEcccCCCcc
Q psy6570 163 PYKLEVFEDNLYFSTYRTNNILKINKFGNSDF 194 (713)
Q Consensus 163 p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~ 194 (713)
..+..+.+++||+.+. .+.|+.++...+..+
T Consensus 328 ~~sp~v~~g~l~v~~~-~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 328 LTAPVLYNGYLVVGDS-EGYLHWINREDGRFV 358 (394)
T ss_pred ccCCEEECCEEEEEeC-CCEEEEEECCCCCEE
Confidence 1223456788888764 456777777655443
|
|
| >PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.12 Score=42.78 Aligned_cols=45 Identities=18% Similarity=0.213 Sum_probs=24.4
Q ss_pred ceeeCCC-------------CcccCCCCccccccccccccccchhHHHHHHHHHHHHHHhheee
Q psy6570 655 PICICPR-------------GYAGVRCQTLVHYISKKQSYVNSHISSILILILLLITVGGIGYY 705 (713)
Q Consensus 655 ~~C~C~~-------------Gy~G~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (713)
|.|.|.+ .|.|..|+..-- +....+++++.+++|++++.++.|+|
T Consensus 33 ~~C~C~~T~~~~~~~~~ktt~W~G~aCqKkDv------S~~F~L~~~~ti~lv~~~~~~I~lL~ 90 (103)
T PF12955_consen 33 FACKCKPTVVKTGSGKGKTTHWGGPACQKKDV------SVPFWLFAGFTIALVVLVAGAIGLLF 90 (103)
T ss_pred EEEEeeccccccccccCceeeecccccccccc------cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6788877 466777765321 22234455555555555444444433
|
It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=6 Score=44.84 Aligned_cols=168 Identities=9% Similarity=0.058 Sum_probs=89.1
Q ss_pred ceeEEEccCcccEEecCCCCCceEEEeccCCeEEEeecCC--------CCCCeEEEEecCCceEEEEEcCCCCCcceEEE
Q psy6570 8 NVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGG--------RSSNNIMVSTLEGRKKRTLLNTGLNEPYDIAL 79 (713)
Q Consensus 8 ~I~~~~~~~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~--------~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iav 79 (713)
+|+.++.++..+.+..+. .-....+++.++.|+++..+. .....|++..+++...+. .. -..+..|++
T Consensus 380 ~Lwv~~~gg~~~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~-~g~Issl~w 455 (591)
T PRK13616 380 SLWVGPLGGVAVQVLEGH-SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RV-PGPISELQL 455 (591)
T ss_pred EEEEEeCCCcceeeecCC-CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--cc-CCCcCeEEE
Confidence 555555544433332222 233456777766666553210 012344444444433221 11 135788999
Q ss_pred cCCCCcEEEEccCCCCeEEE---EecCCCCcEEE-----EeCCCCC-CeeEEEeCCCCeEEEEcC-CCCcEEEEeCCCCc
Q psy6570 80 EPLSGRMFWTELGIKPRISG---ASIDGKNKFNL-----VDNNIQW-PTGITIDYPSQRLYWADP-KARTIESINLNGKD 149 (713)
Q Consensus 80 D~~~~~ly~td~~~~~~I~~---~~~dG~~~~~l-----~~~~~~~-p~glavd~~~~~LY~~d~-~~~~I~~~~~~g~~ 149 (713)
.|...+|.+.-.+ +|++ ...++.. ..| +...+.. +..+++-. ++.|++... ....++++++||..
T Consensus 456 SpDG~RiA~i~~g---~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W~~-~~~L~V~~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 456 SRDGVRAAMIIGG---KVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLDWRT-GDSLVVGRSDPEHPVWYVNLDGSN 530 (591)
T ss_pred CCCCCEEEEEECC---EEEEEEEEeCCCCc-eeecccEEeecccCCccccceEec-CCEEEEEecCCCCceEEEecCCcc
Confidence 8877777776532 6666 3433333 333 2223433 46777774 445666543 34569999999987
Q ss_pred eeEEEecCCCCccceeeeeeCCeEEEEeCCCCcEEEEc
Q psy6570 150 RFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKIN 187 (713)
Q Consensus 150 ~~~~~~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~~~ 187 (713)
.+.+..... .....+|+...+.||++|.. .++.+.
T Consensus 531 ~~~~~~~n~-~~~v~~vaa~~~~iyv~~~~--g~~~l~ 565 (591)
T PRK13616 531 SDALPSRNL-SAPVVAVAASPSTVYVTDAR--AVLQLP 565 (591)
T ss_pred ccccCCCCc-cCceEEEecCCceEEEEcCC--ceEEec
Confidence 665332211 22335566666789998754 355554
|
|
| >PTZ00382 Variant-specific surface protein (VSP); Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.18 Score=41.81 Aligned_cols=6 Identities=33% Similarity=1.287 Sum_probs=3.0
Q ss_pred CCCCcc
Q psy6570 659 CPRGYA 664 (713)
Q Consensus 659 C~~Gy~ 664 (713)
|.+||.
T Consensus 42 C~~GY~ 47 (96)
T PTZ00382 42 CNSGFS 47 (96)
T ss_pred CcCCcc
Confidence 555553
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=93.36 E-value=2 Score=45.40 Aligned_cols=156 Identities=10% Similarity=-0.014 Sum_probs=87.1
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCc
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNK 107 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~ 107 (713)
..++.|-.. ++|+-+-. ..+.|.+++++.+.....+...-...+-+-+-|..+.++.+-.... .+..-++++...
T Consensus 71 v~s~~fR~D-G~LlaaGD---~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~-v~k~~d~s~a~v 145 (487)
T KOG0310|consen 71 VYSVDFRSD-GRLLAAGD---ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDK-VVKYWDLSTAYV 145 (487)
T ss_pred eeEEEeecC-CeEEEccC---CcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCc-eEEEEEcCCcEE
Confidence 445555433 44544333 4677888886553221112122122334566677777887765444 444556665554
Q ss_pred EEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCcccee--eeeeCCeEEEEeCCCCcEEE
Q psy6570 108 FNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYK--LEVFEDNLYFSTYRTNNILK 185 (713)
Q Consensus 108 ~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~--i~~~~~~ly~td~~~~~i~~ 185 (713)
+.-+...-.+-.-+++.+.++.|+++-.+.+.|...+..... ..+.+.. ...|.. +.+-.+.++.+. +++.|..
T Consensus 146 ~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~eln--hg~pVe~vl~lpsgs~iasA-gGn~vkV 221 (487)
T KOG0310|consen 146 QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELN--HGCPVESVLALPSGSLIASA-GGNSVKV 221 (487)
T ss_pred EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEec--CCCceeeEEEcCCCCEEEEc-CCCeEEE
Confidence 433444555678889999999999999999988887765443 2222221 223432 222344565553 5566777
Q ss_pred EcccCCC
Q psy6570 186 INKFGNS 192 (713)
Q Consensus 186 ~~~~~~~ 192 (713)
++..++.
T Consensus 222 WDl~~G~ 228 (487)
T KOG0310|consen 222 WDLTTGG 228 (487)
T ss_pred EEecCCc
Confidence 7766443
|
|
| >PF14339 DUF4394: Domain of unknown function (DUF4394) | Back alignment and domain information |
|---|
Probab=93.22 E-value=8.9 Score=37.40 Aligned_cols=161 Identities=13% Similarity=0.119 Sum_probs=89.3
Q ss_pred CCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCC-----CCCcceEEEcCCCCcEEEE-ccCCCCeEE
Q psy6570 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG-----LNEPYDIALEPLSGRMFWT-ELGIKPRIS 98 (713)
Q Consensus 25 ~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~-----~~~p~~iavD~~~~~ly~t-d~~~~~~I~ 98 (713)
.....||.+-+.+++||-.. ..++|+.++........+.... ...+.++.++|.-.+|.+. +.+++ +
T Consensus 26 ge~l~GID~Rpa~G~LYgl~----~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~~GqN---l 98 (236)
T PF14339_consen 26 GESLVGIDFRPANGQLYGLG----STGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSNTGQN---L 98 (236)
T ss_pred CCeEEEEEeecCCCCEEEEe----CCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEccCCcE---E
Confidence 45678899999999999774 4689999998765554442111 2346788888888888776 44444 5
Q ss_pred EEecCCCCcEEEEeCCCC----------CC--eeEEEeC-----C-CCeEEEEcCCCCcEEEEe-CCCCceeEEEecCCC
Q psy6570 99 GASIDGKNKFNLVDNNIQ----------WP--TGITIDY-----P-SQRLYWADPKARTIESIN-LNGKDRFVVYHTEDN 159 (713)
Q Consensus 99 ~~~~dG~~~~~l~~~~~~----------~p--~glavd~-----~-~~~LY~~d~~~~~I~~~~-~~g~~~~~~~~~~~~ 159 (713)
|++.|.... +.....+. .| .+.|... . .-.||-.|.....+++.. .+-.....+......
T Consensus 99 R~npdtGav-~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q~ppN~GtL~~vG~LGvd 177 (236)
T PF14339_consen 99 RLNPDTGAV-TIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQNPPNDGTLNTVGPLGVD 177 (236)
T ss_pred EECCCCCCc-eeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEecCCCCCcEEeeeccccc
Confidence 666653221 11121222 22 2233321 1 457898998888887773 333333333322222
Q ss_pred CccceeeeeeC----CeEEEEeC--CCCcEEEEcccCCCc
Q psy6570 160 GYKPYKLEVFE----DNLYFSTY--RTNNILKINKFGNSD 193 (713)
Q Consensus 160 ~~~p~~i~~~~----~~ly~td~--~~~~i~~~~~~~~~~ 193 (713)
.....++++.. ...-|+-. ....++++++..+..
T Consensus 178 ~~~~~gFDI~~~~~~~~~a~a~~~~~~~~LY~vdL~TG~a 217 (236)
T PF14339_consen 178 AAGDAGFDIAGDGNGGNAAYAVLGVGGSGLYTVDLTTGAA 217 (236)
T ss_pred cCcccceeeecCCCcceEEEEEecCCCcEEEEEECCCccc
Confidence 22334555542 22222221 125677777765543
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=93.18 E-value=13 Score=40.92 Aligned_cols=116 Identities=13% Similarity=0.087 Sum_probs=72.8
Q ss_pred CCCceEEEeccCCeEEEeecCCCCCCeEEEEec-CC-ceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecC
Q psy6570 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTL-EG-RKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASID 103 (713)
Q Consensus 26 ~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~-~G-~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~d 103 (713)
....++++-+.+. +.++-. ....|.+.+. +. ...+++. .-......+++.|.. .++++-.... .|..-++.
T Consensus 204 ~~v~~~~fs~d~~-~l~s~s---~D~tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~-tvriWd~~ 276 (456)
T KOG0266|consen 204 RGVSDVAFSPDGS-YLLSGS---DDKTLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDG-TVRIWDVR 276 (456)
T ss_pred cceeeeEECCCCc-EEEEec---CCceEEEeeccCCCeEEEEec-CCCCceEEEEecCCC-CEEEEecCCC-cEEEEecc
Confidence 3456777776544 334444 4566777666 33 4455554 334567899999876 6767655544 56666666
Q ss_pred CCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCc
Q psy6570 104 GKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKD 149 (713)
Q Consensus 104 G~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~ 149 (713)
.......+......-+++++.++...|..+ ...+.|...++....
T Consensus 277 ~~~~~~~l~~hs~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 277 TGECVRKLKGHSDGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGS 321 (456)
T ss_pred CCeEEEeeeccCCceEEEEECCCCCEEEEc-CCCccEEEEECCCCc
Confidence 544444444455567889999655555544 668888888887766
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.06 E-value=1.6 Score=46.32 Aligned_cols=104 Identities=13% Similarity=0.198 Sum_probs=62.5
Q ss_pred eEEEEecCCceEEEEEcC---C-CCCcceEEEc-CC-CCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeC
Q psy6570 52 NIMVSTLEGRKKRTLLNT---G-LNEPYDIALE-PL-SGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDY 125 (713)
Q Consensus 52 ~I~~~~~~G~~~~~l~~~---~-~~~p~~iavD-~~-~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~ 125 (713)
.|.+++......+++..+ + +.....+.+- +. ++.|++++.....+|+.++++|...+.|.......-.-+.+|.
T Consensus 211 ~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~ 290 (353)
T PF00930_consen 211 DLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDE 290 (353)
T ss_dssp EEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEEC
T ss_pred EEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcC
Confidence 356667644333333322 1 3333445442 33 4445555543445899999999876655443433334688999
Q ss_pred CCCeEEEEcC----CCCcEEEEeCC-CCceeEEEe
Q psy6570 126 PSQRLYWADP----KARTIESINLN-GKDRFVVYH 155 (713)
Q Consensus 126 ~~~~LY~~d~----~~~~I~~~~~~-g~~~~~~~~ 155 (713)
.+++||++-. ....|++++++ +...+.|..
T Consensus 291 ~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~ 325 (353)
T PF00930_consen 291 DNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC 325 (353)
T ss_dssp TSSEEEEEESSGGTTSBEEEEEETTETTEEEESST
T ss_pred CCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccC
Confidence 9999999854 45679999999 776665543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=93.02 E-value=7 Score=37.36 Aligned_cols=92 Identities=12% Similarity=0.064 Sum_probs=58.3
Q ss_pred eEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEE
Q psy6570 52 NIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLY 131 (713)
Q Consensus 52 ~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY 131 (713)
.|++++..+.....+-...-....+++..|.+..+.+.......+|...++++.....+ .-...+.|.++|.+.+|.
T Consensus 40 ~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~---~~~~~n~i~wsP~G~~l~ 116 (194)
T PF08662_consen 40 ELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSF---GTQPRNTISWSPDGRFLV 116 (194)
T ss_pred EEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEee---cCCCceEEEECCCCCEEE
Confidence 46666666555444432222347899999977776665433233677777765444433 234457899999988888
Q ss_pred EEcCC--CCcEEEEeCC
Q psy6570 132 WADPK--ARTIESINLN 146 (713)
Q Consensus 132 ~~d~~--~~~I~~~~~~ 146 (713)
.+..+ .+.|...+.+
T Consensus 117 ~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 117 LAGFGNLNGDLEFWDVR 133 (194)
T ss_pred EEEccCCCcEEEEEECC
Confidence 88744 3567777766
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=92.96 E-value=11 Score=37.86 Aligned_cols=133 Identities=14% Similarity=0.126 Sum_probs=73.1
Q ss_pred cCCceeEEEccCcc--cEEecCCCCCceEEEeccCC--eEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEc
Q psy6570 5 SSGNVTRVKREMNL--KTVLSNLHDPRGVAVDWVGK--NLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80 (713)
Q Consensus 5 ~~~~I~~~~~~~~~--~~~~~~~~~p~gla~D~~~~--~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD 80 (713)
.+.+|+.+|+.... ..++..-.....|.|++... +|. +-. ..+.|.+.+.+.-....-+..--.+.++|+|.
T Consensus 61 sDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLl-S~s---dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiH 136 (362)
T KOG0294|consen 61 SDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLL-SGS---DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIH 136 (362)
T ss_pred CCCcEEEEeccchhhhcceeccccceEEEEecCCcchhhee-eec---CCCcEEEEEcCCeEEeeeecccccccceeEec
Confidence 56788888887644 34455566677777775432 333 333 46777777654422111122234569999999
Q ss_pred CCCCcEEEEccCCCCeEEEEecC-CCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC
Q psy6570 81 PLSGRMFWTELGIKPRISGASID-GKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNG 147 (713)
Q Consensus 81 ~~~~~ly~td~~~~~~I~~~~~d-G~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g 147 (713)
| .++|-.+-.+.. .+..-++- |..-.++ .--+.+.-|.+++.+++.|+.- .++|..+.++.
T Consensus 137 P-S~KLALsVg~D~-~lr~WNLV~Gr~a~v~--~L~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~ 198 (362)
T KOG0294|consen 137 P-SGKLALSVGGDQ-VLRTWNLVRGRVAFVL--NLKNKATLVSWSPQGDHFVVSG--RNKIDIYQLDN 198 (362)
T ss_pred C-CCceEEEEcCCc-eeeeehhhcCccceee--ccCCcceeeEEcCCCCEEEEEe--ccEEEEEeccc
Confidence 8 466666654433 44444442 3222222 1234566688887776666554 34444444443
|
|
| >PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ] | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.025 Score=41.83 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=0.8
Q ss_pred cccccchhHHHHHHHHHHHHHHhheeeEEEEec
Q psy6570 679 QSYVNSHISSILILILLLITVGGIGYYIFRIKM 711 (713)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (713)
+...++.+++++++++++++|++++++|+|+|.
T Consensus 8 ~~vlaavIaG~Vvgll~ailLIlf~iyR~rkkd 40 (64)
T PF01034_consen 8 SEVLAAVIAGGVVGLLFAILLILFLIYRMRKKD 40 (64)
T ss_dssp -----------------------------S---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344577888888888888888888888877764
|
Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.48 Score=32.23 Aligned_cols=41 Identities=27% Similarity=0.429 Sum_probs=30.0
Q ss_pred cCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEc
Q psy6570 36 VGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80 (713)
Q Consensus 36 ~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD 80 (713)
.+++||+++. ..+.|.++++........+..+ ..|.+|+++
T Consensus 2 d~~~lyv~~~---~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNS---GSNTVSVIDTATNKVIATIPVG-GYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeC---CCCEEEEEECCCCeEEEEEECC-CCCceEEeC
Confidence 4678999998 7899999998654443334343 789999874
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=92.86 E-value=6.2 Score=41.28 Aligned_cols=153 Identities=11% Similarity=0.020 Sum_probs=87.2
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCC-CC
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDG-KN 106 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG-~~ 106 (713)
-..++|.+. +.||.+-. ..+.|.+.++.......-+.........|++. .+|+...+..... .|...++.- ..
T Consensus 350 ~ts~~fHpD-gLifgtgt---~d~~vkiwdlks~~~~a~Fpght~~vk~i~Fs-ENGY~Lat~add~-~V~lwDLRKl~n 423 (506)
T KOG0289|consen 350 YTSAAFHPD-GLIFGTGT---PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFS-ENGYWLATAADDG-SVKLWDLRKLKN 423 (506)
T ss_pred eEEeeEcCC-ceEEeccC---CCceEEEEEcCCccccccCCCCCCceeEEEec-cCceEEEEEecCC-eEEEEEehhhcc
Confidence 455677654 77887776 66778888887654322222223456678887 5776655554433 344444432 13
Q ss_pred cEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEeCCCCcEEEE
Q psy6570 107 KFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKI 186 (713)
Q Consensus 107 ~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~~ 186 (713)
.+++........+.+.||..+.+|-.+ ...-+|+.+......-+.+...........++.+-+...|..+.+.++++++
T Consensus 424 ~kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 424 FKTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRL 502 (506)
T ss_pred cceeeccccccceeEEEcCCCCeEEee-cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEE
Confidence 334443344456889999777666655 3333555555444444444333222223456666677778887777777665
Q ss_pred c
Q psy6570 187 N 187 (713)
Q Consensus 187 ~ 187 (713)
-
T Consensus 503 ~ 503 (506)
T KOG0289|consen 503 Y 503 (506)
T ss_pred e
Confidence 3
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=92.67 E-value=14 Score=38.71 Aligned_cols=117 Identities=8% Similarity=-0.014 Sum_probs=64.5
Q ss_pred cceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeC-CCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeE
Q psy6570 74 PYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDN-NIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFV 152 (713)
Q Consensus 74 p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~-~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~ 152 (713)
..++.+.|.+.+|.|++.... .++..--+|....++... .--.-+.++|.| ++.||.+-...+.|...++.... .
T Consensus 306 V~~ls~h~tgeYllsAs~d~~-w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~--~ 381 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASNDGT-WAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQT--N 381 (506)
T ss_pred ceeeeeccCCcEEEEecCCce-EEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCcc--c
Confidence 468999999999999885533 333333344444333331 111236778885 67888888878877777765433 3
Q ss_pred EEecCCCCccceeeeeeCCeE-EEEeCCCCcEEEEcccCCCcc
Q psy6570 153 VYHTEDNGYKPYKLEVFEDNL-YFSTYRTNNILKINKFGNSDF 194 (713)
Q Consensus 153 ~~~~~~~~~~p~~i~~~~~~l-y~td~~~~~i~~~~~~~~~~~ 194 (713)
+..+...-..-..|.+.++-. .++....+.|+-++.+-....
T Consensus 382 ~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~ 424 (506)
T KOG0289|consen 382 VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF 424 (506)
T ss_pred cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccc
Confidence 333322112224566654432 233344444666665444333
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=92.59 E-value=15 Score=39.15 Aligned_cols=104 Identities=12% Similarity=0.108 Sum_probs=54.7
Q ss_pred CCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 83 ~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
++.||++... . .++.+++.... ++..........++++ +++||+.+ ..++|+.++.+.....--... .....
T Consensus 241 ~~~vy~~~~~-g-~l~a~d~~tG~--~~W~~~~~~~~~p~~~--~~~vyv~~-~~G~l~~~d~~tG~~~W~~~~-~~~~~ 312 (377)
T TIGR03300 241 GGQVYAVSYQ-G-RVAALDLRSGR--VLWKRDASSYQGPAVD--DNRLYVTD-ADGVVVALDRRSGSELWKNDE-LKYRQ 312 (377)
T ss_pred CCEEEEEEcC-C-EEEEEECCCCc--EEEeeccCCccCceEe--CCEEEEEC-CCCeEEEEECCCCcEEEcccc-ccCCc
Confidence 4677776543 2 56666663221 2222223334555665 78999886 457888888753322111101 00111
Q ss_pred ceeeeeeCCeEEEEeCCCCcEEEEcccCCCcce
Q psy6570 163 PYKLEVFEDNLYFSTYRTNNILKINKFGNSDFN 195 (713)
Q Consensus 163 p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~ 195 (713)
-....+.+++||+.+ ..+.|+.++...+....
T Consensus 313 ~ssp~i~g~~l~~~~-~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 313 LTAPAVVGGYLVVGD-FEGYLHWLSREDGSFVA 344 (377)
T ss_pred cccCEEECCEEEEEe-CCCEEEEEECCCCCEEE
Confidence 122234677888876 44667777766554433
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=92.55 E-value=11 Score=36.69 Aligned_cols=133 Identities=12% Similarity=0.078 Sum_probs=79.6
Q ss_pred cCCceeEEEccCccc----EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEc
Q psy6570 5 SSGNVTRVKREMNLK----TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~----~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD 80 (713)
....|+.+|+..... ++...-++...+.|...++.+| +-+ ..+.+.+-++.......++... ...+.|++.
T Consensus 59 ~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMy-Tgs---eDgt~kIWdlR~~~~qR~~~~~-spVn~vvlh 133 (311)
T KOG0315|consen 59 GNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMY-TGS---EDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLH 133 (311)
T ss_pred cCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEE-ecC---CCceEEEEeccCcccchhccCC-CCcceEEec
Confidence 345566666665331 2233336677788887766666 444 5677777777664433334332 456789999
Q ss_pred CCCCcEEEEccCCCCeEEEEecCCCC-cEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeC
Q psy6570 81 PLSGRMFWTELGIKPRISGASIDGKN-KFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINL 145 (713)
Q Consensus 81 ~~~~~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~ 145 (713)
|..+.|+..|...+ |++-++.... ...++.........|++++++.+|--+ ...++.+.-++
T Consensus 134 pnQteLis~dqsg~--irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~-nnkG~cyvW~l 196 (311)
T KOG0315|consen 134 PNQTELISGDQSGN--IRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAA-NNKGNCYVWRL 196 (311)
T ss_pred CCcceEEeecCCCc--EEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEe-cCCccEEEEEc
Confidence 99999999996644 6666654432 233444444556789999776655443 34455444443
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=92.33 E-value=3.9 Score=42.26 Aligned_cols=159 Identities=12% Similarity=0.020 Sum_probs=98.5
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceE--EEEEc-CCCCCcceEEEcCCCCcEEEEccCCC-CeEEEEecC
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKK--RTLLN-TGLNEPYDIALEPLSGRMFWTELGIK-PRISGASID 103 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~--~~l~~-~~~~~p~~iavD~~~~~ly~td~~~~-~~I~~~~~d 103 (713)
|..+++.+..+.|++++. ..++.+++.+++.. +.+.. .--.+|..|.++.....+-++|.... ..+...+.+
T Consensus 65 ~~~~~~s~~~~llAv~~~----~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATS----SKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred ccccccCCCceEEEEEeC----CCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccc
Confidence 445555556677888886 34444555544432 21111 12367888888877778888875433 133333333
Q ss_pred -CCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeE-EEecCCCCccceeeeeeCCeEEEEeCCCC
Q psy6570 104 -GKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFV-VYHTEDNGYKPYKLEVFEDNLYFSTYRTN 181 (713)
Q Consensus 104 -G~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~-~~~~~~~~~~p~~i~~~~~~ly~td~~~~ 181 (713)
|..+..+ ..+..-..++|.++..+|..+|. ...|+...+.+..... +... .-.....|++..+++.|+..+.+
T Consensus 141 ~~~~~~~l--GhvSml~dVavS~D~~~IitaDR-DEkIRvs~ypa~f~IesfclG--H~eFVS~isl~~~~~LlS~sGD~ 215 (390)
T KOG3914|consen 141 SGRCEPIL--GHVSMLLDVAVSPDDQFIITADR-DEKIRVSRYPATFVIESFCLG--HKEFVSTISLTDNYLLLSGSGDK 215 (390)
T ss_pred ccCcchhh--hhhhhhheeeecCCCCEEEEecC-CceEEEEecCcccchhhhccc--cHhheeeeeeccCceeeecCCCC
Confidence 4444333 24555678999998888988885 4567777777754321 1111 11234567888889999999999
Q ss_pred cEEEEcccCCCcce
Q psy6570 182 NILKINKFGNSDFN 195 (713)
Q Consensus 182 ~i~~~~~~~~~~~~ 195 (713)
.|+..+...+....
T Consensus 216 tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 216 TLRLWDITSGKLLD 229 (390)
T ss_pred cEEEEecccCCccc
Confidence 99988877666553
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.32 E-value=7.4 Score=36.85 Aligned_cols=169 Identities=8% Similarity=0.023 Sum_probs=83.4
Q ss_pred cCCceeEEEccCcccEEecCCCC----CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCC-CCCcceEEE
Q psy6570 5 SSGNVTRVKREMNLKTVLSNLHD----PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG-LNEPYDIAL 79 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~~~~~~~~~----p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~-~~~p~~iav 79 (713)
...+|++.++.+..+.....+.. -+||.. .++.+|..-+ ..+.-++++.+.-. .+.+.. -..-+||+-
T Consensus 66 g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~--~gd~~y~LTw---~egvaf~~d~~t~~--~lg~~~y~GeGWgLt~ 138 (262)
T COG3823 66 GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK--LGDYFYQLTW---KEGVAFKYDADTLE--ELGRFSYEGEGWGLTS 138 (262)
T ss_pred ccceeEEEeccCceEEEEeecCCccccccceee--ccceEEEEEe---ccceeEEEChHHhh--hhcccccCCcceeeec
Confidence 35677788888654443333331 255543 4577777777 55666666665422 221111 234567777
Q ss_pred cCCCCcEEEEccCCCCeEEEEecCC-C-CcEEEEe---CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEE
Q psy6570 80 EPLSGRMFWTELGIKPRISGASIDG-K-NKFNLVD---NNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVY 154 (713)
Q Consensus 80 D~~~~~ly~td~~~~~~I~~~~~dG-~-~~~~l~~---~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~ 154 (713)
|. ..|.-+| ++. .+...++.. . ..++.+. ..+..-+-|..- .+.||---+.+.+|.|++++...+....
T Consensus 139 d~--~~Limsd-Gsa-tL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGrV~~wi 212 (262)
T COG3823 139 DD--KNLIMSD-GSA-TLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGRVVAWI 212 (262)
T ss_pred CC--cceEeeC-Cce-EEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence 63 3354444 333 233222211 0 0111111 112222333332 5778776778888888888765544433
Q ss_pred ecCC----------CCccceeeeee--CCeEEEEeCCCCcEEEE
Q psy6570 155 HTED----------NGYKPYKLEVF--EDNLYFSTYRTNNILKI 186 (713)
Q Consensus 155 ~~~~----------~~~~p~~i~~~--~~~ly~td~~~~~i~~~ 186 (713)
.... ...-+.||+++ .+++|+|-..=..++.+
T Consensus 213 dlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEV 256 (262)
T COG3823 213 DLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEV 256 (262)
T ss_pred EccCCchhcCccccccccccceeecCcCCeEEEecCcCceeEEE
Confidence 2211 12234566665 56888875433344444
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=92.24 E-value=13 Score=36.97 Aligned_cols=156 Identities=13% Similarity=0.120 Sum_probs=92.8
Q ss_pred eEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCC-CCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeE
Q psy6570 52 NIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGI-KPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRL 130 (713)
Q Consensus 52 ~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~-~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~L 130 (713)
....-+.........+..-.....+|++-|.+++.|++..-. ..+||-+. +|.-++++.. .-.-.+.+.+-| ++.-
T Consensus 167 TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R-~~~c~qtF~g-hesDINsv~ffP-~G~a 243 (343)
T KOG0286|consen 167 TCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR-SGQCVQTFEG-HESDINSVRFFP-SGDA 243 (343)
T ss_pred eEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeecc-CcceeEeecc-cccccceEEEcc-CCCe
Confidence 333444433333333333345677888888889999986432 23555443 3445555542 333456788874 5677
Q ss_pred EEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEE
Q psy6570 131 YWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLI 209 (713)
Q Consensus 131 Y~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v 209 (713)
|.+-+.....+.+|+.......+++.......-.++++. .++|.++-+....+...+.-.+..+.+|..+-++++.|.+
T Consensus 244 fatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~ 323 (343)
T KOG0286|consen 244 FATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGV 323 (343)
T ss_pred eeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEE
Confidence 778777888888887665444444443322233556654 5677777677777777776666666667666555555544
Q ss_pred E
Q psy6570 210 L 210 (713)
Q Consensus 210 ~ 210 (713)
.
T Consensus 324 s 324 (343)
T KOG0286|consen 324 S 324 (343)
T ss_pred C
Confidence 3
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=92.24 E-value=12 Score=36.43 Aligned_cols=158 Identities=10% Similarity=-0.054 Sum_probs=85.1
Q ss_pred CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCc-eEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCC
Q psy6570 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR-KKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDG 104 (713)
Q Consensus 26 ~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~-~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG 104 (713)
.-...|.+.+....|+..|. .+.|.+-|+... -...++.+.......|+|+|...+|--+... ++.++-+|-+
T Consensus 125 spVn~vvlhpnQteLis~dq----sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnk--G~cyvW~l~~ 198 (311)
T KOG0315|consen 125 SPVNTVVLHPNQTELISGDQ----SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNK--GNCYVWRLLN 198 (311)
T ss_pred CCcceEEecCCcceEEeecC----CCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCC--ccEEEEEccC
Confidence 33467888888899999986 688999998765 3556676766778889999855444333322 2444444332
Q ss_pred -CCcEEEEe-----CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCC-ceeEEEecCCCCccceeeeeeCCeEEEEe
Q psy6570 105 -KNKFNLVD-----NNIQWPTGITIDYPSQRLYWADPKARTIESINLNGK-DRFVVYHTEDNGYKPYKLEVFEDNLYFST 177 (713)
Q Consensus 105 -~~~~~l~~-----~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~-~~~~~~~~~~~~~~p~~i~~~~~~ly~td 177 (713)
.....|.. ..-.+..-.-++|+.+.| .+-+....+...+.++. ..++.+....+....-.+..++.+| +|.
T Consensus 199 ~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~l-at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~Yl-vTa 276 (311)
T KOG0315|consen 199 HQTASELEPVHKFQAHNGHILRCLLSPDVKYL-ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYL-VTA 276 (311)
T ss_pred CCccccceEhhheecccceEEEEEECCCCcEE-EeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEE-Eec
Confidence 22222221 112223334566655444 34444556666777776 3333344433333333444444444 343
Q ss_pred CCCCcEEEEcccCC
Q psy6570 178 YRTNNILKINKFGN 191 (713)
Q Consensus 178 ~~~~~i~~~~~~~~ 191 (713)
...+.+...+...+
T Consensus 277 ssd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 277 SSDHTARLWDLSAG 290 (311)
T ss_pred CCCCceeecccccC
Confidence 34444444444333
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=92.02 E-value=14 Score=40.68 Aligned_cols=133 Identities=17% Similarity=0.136 Sum_probs=77.9
Q ss_pred CCceeEEEc-cC--cccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCC-ceEEEEEcCCCCCcceEEEcC
Q psy6570 6 SGNVTRVKR-EM--NLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEG-RKKRTLLNTGLNEPYDIALEP 81 (713)
Q Consensus 6 ~~~I~~~~~-~~--~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G-~~~~~l~~~~~~~p~~iavD~ 81 (713)
+..|...+. +. ..+++..-.....+++|.+.+ +++++-. ..+.|.+.+..+ +..+++. .......++++.+
T Consensus 224 D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs---~D~tvriWd~~~~~~~~~l~-~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 224 DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGS---DDGTVRIWDVRTGECVRKLK-GHSDGISGLAFSP 298 (456)
T ss_pred CceEEEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEec---CCCcEEEEeccCCeEEEeee-ccCCceEEEEECC
Confidence 445555555 22 224444444556889999987 6666665 578888888876 4444443 3345778899986
Q ss_pred CCCcEEEEccCCCCeEEEEecCCCCcE--EEEeCCCC--CCeeEEEeCCCCeEEEEcCCCCcEEEEeCC
Q psy6570 82 LSGRMFWTELGIKPRISGASIDGKNKF--NLVDNNIQ--WPTGITIDYPSQRLYWADPKARTIESINLN 146 (713)
Q Consensus 82 ~~~~ly~td~~~~~~I~~~~~dG~~~~--~l~~~~~~--~p~glavd~~~~~LY~~d~~~~~I~~~~~~ 146 (713)
++.++++..... .|..-++.....+ ..+..... .-.-+.+++....|+.+- ..+.+...++.
T Consensus 299 -d~~~l~s~s~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~-~d~~~~~w~l~ 364 (456)
T KOG0266|consen 299 -DGNLLVSASYDG-TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS-LDRTLKLWDLR 364 (456)
T ss_pred -CCCEEEEcCCCc-cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec-CCCeEEEEEcc
Confidence 566666664434 7888888776632 22221211 226677776555555443 33444444444
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=92.00 E-value=20 Score=38.92 Aligned_cols=156 Identities=13% Similarity=0.200 Sum_probs=84.1
Q ss_pred EEEeccCCeEEEeecCCC-C------CCeEEEEecCCceE--EEEEcCCCCCcc---eEEEcCCCCcEEEEccC-CC-Ce
Q psy6570 31 VAVDWVGKNLYWTDAGGR-S------SNNIMVSTLEGRKK--RTLLNTGLNEPY---DIALEPLSGRMFWTELG-IK-PR 96 (713)
Q Consensus 31 la~D~~~~~ly~td~~~~-~------~~~I~~~~~~G~~~--~~l~~~~~~~p~---~iavD~~~~~ly~td~~-~~-~~ 96 (713)
+++-..+..||++..... . ..+|++..+..... +.|+... ..+. ++.+.+.+++|+++... .. ..
T Consensus 175 ~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~-~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~ 253 (414)
T PF02897_consen 175 VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEP-DEPFWFVSVSRSKDGRYLFISSSSGTSESE 253 (414)
T ss_dssp EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-T-TCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeec-CCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence 566555557777765431 2 45688888876543 3455332 3343 77788777888875433 22 47
Q ss_pred EEEEecCCC----CcEEEEeCCCCCCeeEEEeCCCCeEEE-Ec--CCCCcEEEEeCCCCce---e-EEEecCCCCcccee
Q psy6570 97 ISGASIDGK----NKFNLVDNNIQWPTGITIDYPSQRLYW-AD--PKARTIESINLNGKDR---F-VVYHTEDNGYKPYK 165 (713)
Q Consensus 97 I~~~~~dG~----~~~~l~~~~~~~p~glavd~~~~~LY~-~d--~~~~~I~~~~~~g~~~---~-~~~~~~~~~~~p~~ 165 (713)
|+.++++.. ....++......-.. .++..++.+|+ ++ ....+|.+++++.... . ++..... ...-.+
T Consensus 254 v~~~d~~~~~~~~~~~~~l~~~~~~~~~-~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~-~~~l~~ 331 (414)
T PF02897_consen 254 VYLLDLDDGGSPDAKPKLLSPREDGVEY-YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE-DVSLED 331 (414)
T ss_dssp EEEEECCCTTTSS-SEEEEEESSSS-EE-EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS-SEEEEE
T ss_pred EEEEeccccCCCcCCcEEEeCCCCceEE-EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC-ceeEEE
Confidence 888888864 233333323222222 23333777776 44 4567899999877542 3 4443322 224567
Q ss_pred eeeeCCeEEEEeCC--CCcEEEEccc
Q psy6570 166 LEVFEDNLYFSTYR--TNNILKINKF 189 (713)
Q Consensus 166 i~~~~~~ly~td~~--~~~i~~~~~~ 189 (713)
+.+++++|++.... ..+|..++..
T Consensus 332 ~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 332 VSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETT
T ss_pred EEEECCEEEEEEEECCccEEEEEECC
Confidence 77889998887543 3345555544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG3512|consensus | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.35 Score=50.48 Aligned_cols=24 Identities=29% Similarity=0.684 Sum_probs=16.1
Q ss_pred eeecCCCCCCeeecCCCcccCCcc
Q psy6570 320 TCEFDDDFDPHCICQENFYGTYCE 343 (713)
Q Consensus 320 ~C~~~~~~~~~C~C~~g~~G~~C~ 343 (713)
.|+.+..+...|.|..+-+|..|+
T Consensus 286 ~Cv~d~~~~ltCdC~HNTaGPdCg 309 (592)
T KOG3512|consen 286 RCVMDESSHLTCDCEHNTAGPDCG 309 (592)
T ss_pred eeeeccCCceEEecccCCCCCCcc
Confidence 566655555677777777777665
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=27 Score=39.44 Aligned_cols=157 Identities=7% Similarity=-0.026 Sum_probs=79.3
Q ss_pred CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCC
Q psy6570 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGK 105 (713)
Q Consensus 26 ~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~ 105 (713)
.....|++.+....++.+-. ..+.|.+.++........+.. ...+..|++++. |.++.+..... .|...++...
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS---~DgtIrIWDl~tg~~~~~i~~-~~~V~Slswspd-G~lLat~s~D~-~IrIwD~Rsg 199 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSG---FDSFVNIWDIENEKRAFQINM-PKKLSSLKWNIK-GNLLSGTCVGK-HMHIIDPRKQ 199 (568)
T ss_pred CcEEEEEECCCCCeEEEEEe---CCCeEEEEECCCCcEEEEEec-CCcEEEEEECCC-CCEEEEEecCC-EEEEEECCCC
Confidence 34677888887666666655 467888888875443322222 245778999974 55555543333 6777777644
Q ss_pred CcEEEEeCCCCCCee--EE---EeCCCCeEEEEcCCC---CcEEEEeCCC--CceeEEEecCCCCcccee--eeeeCCeE
Q psy6570 106 NKFNLVDNNIQWPTG--IT---IDYPSQRLYWADPKA---RTIESINLNG--KDRFVVYHTEDNGYKPYK--LEVFEDNL 173 (713)
Q Consensus 106 ~~~~l~~~~~~~p~g--la---vd~~~~~LY~~d~~~---~~I~~~~~~g--~~~~~~~~~~~~~~~p~~--i~~~~~~l 173 (713)
....-+......-.. +. +.+..++|..+-... +.|...++.. ..+..+ .... ...++- .+.+.+.+
T Consensus 200 ~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~-~ld~-~~~~L~p~~D~~tg~l 277 (568)
T PTZ00420 200 EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM-SIDN-ASAPLIPHYDESTGLI 277 (568)
T ss_pred cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE-EecC-CccceEEeeeCCCCCE
Confidence 332222211111111 11 123445555543222 3466666553 222222 1110 111111 11224678
Q ss_pred EEEeCCCCcEEEEcccC
Q psy6570 174 YFSTYRTNNILKINKFG 190 (713)
Q Consensus 174 y~td~~~~~i~~~~~~~ 190 (713)
|++-.+.+.|+.++...
T Consensus 278 ~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 278 YLIGKGDGNCRYYQHSL 294 (568)
T ss_pred EEEEECCCeEEEEEccC
Confidence 88877777777776543
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=91.74 E-value=23 Score=42.14 Aligned_cols=156 Identities=6% Similarity=-0.076 Sum_probs=82.5
Q ss_pred CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCc-----eE--EEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEE
Q psy6570 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR-----KK--RTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRIS 98 (713)
Q Consensus 26 ~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~-----~~--~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~ 98 (713)
....+|+|++.++.| .+-. ..+.|.+.++... .. ..+.........+++.++..+.++.+-.... .|.
T Consensus 484 ~~V~~i~fs~dg~~l-atgg---~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg-~v~ 558 (793)
T PLN00181 484 NLVCAIGFDRDGEFF-ATAG---VNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEG-VVQ 558 (793)
T ss_pred CcEEEEEECCCCCEE-EEEe---CCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCC-eEE
Confidence 346778999765544 4444 4677777775431 10 0111111234567777765454444443333 666
Q ss_pred EEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeee--CCeEEEE
Q psy6570 99 GASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF--EDNLYFS 176 (713)
Q Consensus 99 ~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~--~~~ly~t 176 (713)
..++........+.........|++++.++.++++-...+.|...++........+.. ......+.+. .+.++++
T Consensus 559 lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~---~~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT---KANICCVQFPSESGRSLAF 635 (793)
T ss_pred EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec---CCCeEEEEEeCCCCCEEEE
Confidence 6676644333333333445678999876677777766677777777754332222211 1122334332 3445555
Q ss_pred eCCCCcEEEEccc
Q psy6570 177 TYRTNNILKINKF 189 (713)
Q Consensus 177 d~~~~~i~~~~~~ 189 (713)
-...+.|+.++..
T Consensus 636 gs~dg~I~iwD~~ 648 (793)
T PLN00181 636 GSADHKVYYYDLR 648 (793)
T ss_pred EeCCCeEEEEECC
Confidence 5556666666654
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=91.71 E-value=13 Score=38.07 Aligned_cols=116 Identities=13% Similarity=0.088 Sum_probs=74.2
Q ss_pred CcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCc---------EEEEeCC-------------CCCCeeEEEeCCCCeE
Q psy6570 73 EPYDIALEPLSGRMFWTELGIKPRISGASIDGKNK---------FNLVDNN-------------IQWPTGITIDYPSQRL 130 (713)
Q Consensus 73 ~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~---------~~l~~~~-------------~~~p~glavd~~~~~L 130 (713)
+...-.-+|..++|.++-.+.. +|++...+++.. ++++..+ -..+.-||.||.+.+|
T Consensus 282 rvqtacWspcGsfLLf~~sgsp-~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyL 360 (445)
T KOG2139|consen 282 RVQTACWSPCGSFLLFACSGSP-RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYL 360 (445)
T ss_pred ceeeeeecCCCCEEEEEEcCCc-eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEE
Confidence 6667788998999999887766 999988876432 2222111 2246779999999999
Q ss_pred EEEcCCCCcE-------EEEeCCCCceeEE-EecCCCCccceeeeee----CCeEEEEeCCCCcEEEEccc
Q psy6570 131 YWADPKARTI-------ESINLNGKDRFVV-YHTEDNGYKPYKLEVF----EDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 131 Y~~d~~~~~I-------~~~~~~g~~~~~~-~~~~~~~~~p~~i~~~----~~~ly~td~~~~~i~~~~~~ 189 (713)
-++-.+..+| .+++...+....+ .-...+..+|..|.+. ++.|....|.+++|.++..+
T Consensus 361 av~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 361 AVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 9987666643 3333332222222 2222234557555542 66788888999998888653
|
|
| >COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=91.64 E-value=12 Score=36.42 Aligned_cols=97 Identities=19% Similarity=0.266 Sum_probs=56.3
Q ss_pred CCCeEEEEecCCce--EEEEEc------CCCCCcceEEE--cCCCCcEEEEccCCCCeEEEEec----CCCCcEEEEe-C
Q psy6570 49 SSNNIMVSTLEGRK--KRTLLN------TGLNEPYDIAL--EPLSGRMFWTELGIKPRISGASI----DGKNKFNLVD-N 113 (713)
Q Consensus 49 ~~~~I~~~~~~G~~--~~~l~~------~~~~~p~~iav--D~~~~~ly~td~~~~~~I~~~~~----dG~~~~~l~~-~ 113 (713)
.+++|..+..|+.. .+.+.. ..+..|.|+++ ++.++.+|+--.+..+.|....+ +|..+..++. -
T Consensus 122 ~~~~i~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~f 201 (364)
T COG4247 122 QNDKIVFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQF 201 (364)
T ss_pred cCCeEEEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEee
Confidence 56777776666543 333332 23566777776 45556555543333335655544 2333333332 1
Q ss_pred CC-CCCeeEEEeCCCCeEEEEcCCCCcEEEEeCC
Q psy6570 114 NI-QWPTGITIDYPSQRLYWADPKARTIESINLN 146 (713)
Q Consensus 114 ~~-~~p~glavd~~~~~LY~~d~~~~~I~~~~~~ 146 (713)
.+ .+..|+..|...+.||+++.. -.||++..+
T Consensus 202 k~~tQTEG~VaDdEtG~LYIaeEd-vaiWK~~Ae 234 (364)
T COG4247 202 KIPTQTEGMVADDETGFLYIAEED-VAIWKYEAE 234 (364)
T ss_pred ecCCcccceeeccccceEEEeecc-ceeeecccC
Confidence 11 245799999999999999854 458887754
|
|
| >PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.12 Score=33.96 Aligned_cols=19 Identities=37% Similarity=0.822 Sum_probs=15.0
Q ss_pred cEEeecCCCceeeCCCCCc
Q psy6570 564 GTCVLIEGKPSCKCLPPYS 582 (713)
Q Consensus 564 ~~C~~~~g~~~C~C~~G~~ 582 (713)
..|++.+++|+|.|++||.
T Consensus 10 h~C~~~~g~~~C~C~~Gy~ 28 (36)
T PF14670_consen 10 HICVNTPGSYRCSCPPGYK 28 (36)
T ss_dssp SEEEEETTSEEEE-STTEE
T ss_pred CCCccCCCceEeECCCCCE
Confidence 4788888888888888886
|
... |
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=91.54 E-value=13 Score=39.46 Aligned_cols=76 Identities=14% Similarity=0.209 Sum_probs=50.3
Q ss_pred CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccC-CCCeEEEEec
Q psy6570 24 NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELG-IKPRISGASI 102 (713)
Q Consensus 24 ~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~-~~~~I~~~~~ 102 (713)
.+....+|.|||+++.-|++-. ....|.++.++++....-+..-.+...+|..||. +.|.-+-+. ..-+||.+.-
T Consensus 315 ~~~s~~~lDVdW~~~~~F~ts~---td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSNDEFATSS---TDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred eeccCCccceEEecCceEeecC---CCceEEEEEecCCCcceeeecccCceEEEEECCC-CceEEEecCCCeeEeeecCC
Confidence 4555568999999999998877 6788888888876543333234477889999975 455444322 2226666443
Q ss_pred C
Q psy6570 103 D 103 (713)
Q Consensus 103 d 103 (713)
+
T Consensus 391 ~ 391 (524)
T KOG0273|consen 391 S 391 (524)
T ss_pred C
Confidence 3
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=91.44 E-value=11 Score=40.59 Aligned_cols=103 Identities=17% Similarity=0.091 Sum_probs=64.0
Q ss_pred CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEE-cCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEec
Q psy6570 24 NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLL-NTGLNEPYDIALEPLSGRMFWTELGIKPRISGASI 102 (713)
Q Consensus 24 ~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~-~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~ 102 (713)
..+....|++.+.+..||=.+. .+.|..-+........+. ....++..+|+.. ..+.||-..+.. .|.++++
T Consensus 319 HnK~ITaLtv~~d~~~i~Sgsy----DG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-~~~~~~t~g~Dd--~l~~~~~ 391 (603)
T KOG0318|consen 319 HNKSITALTVSPDGKTIYSGSY----DGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-ESGELFTIGWDD--TLRVISL 391 (603)
T ss_pred cccceeEEEEcCCCCEEEeecc----CceEEEEecCCccccccccccccceEEEEeec-CCCcEEEEecCC--eEEEEec
Confidence 3445677888877777774443 677777665433322222 2334678899987 457787777654 4777766
Q ss_pred CCCC--cEEEEeCCCCCCeeEEEeCCCCeEEEEc
Q psy6570 103 DGKN--KFNLVDNNIQWPTGITIDYPSQRLYWAD 134 (713)
Q Consensus 103 dG~~--~~~l~~~~~~~p~glavd~~~~~LY~~d 134 (713)
.+.. ...++. --.+|.+||+..+++.+.++-
T Consensus 392 ~~~~~t~~~~~~-lg~QP~~lav~~d~~~avv~~ 424 (603)
T KOG0318|consen 392 KDNGYTKSEVVK-LGSQPKGLAVLSDGGTAVVAC 424 (603)
T ss_pred ccCcccccceee-cCCCceeEEEcCCCCEEEEEe
Confidence 4432 222222 345799999997776776665
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.79 Score=31.11 Aligned_cols=42 Identities=14% Similarity=0.277 Sum_probs=29.0
Q ss_pred CCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEe
Q psy6570 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITID 124 (713)
Q Consensus 81 ~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd 124 (713)
|.+++||+++++.+ .|..++........-+.. ...|.+|+|+
T Consensus 1 pd~~~lyv~~~~~~-~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSN-TVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCC-EEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence 34678999998877 888888754433333333 4678998875
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=91.28 E-value=16 Score=41.49 Aligned_cols=158 Identities=9% Similarity=0.007 Sum_probs=85.8
Q ss_pred CCCCceEEEeccCCeEEEeecC----CCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccC--------
Q psy6570 25 LHDPRGVAVDWVGKNLYWTDAG----GRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELG-------- 92 (713)
Q Consensus 25 ~~~p~gla~D~~~~~ly~td~~----~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~-------- 92 (713)
+..+..+++.+.++.+.++... .....+|++.+.+|.. +.++... .-..-.++|..+.|++...+
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 3466788888888777666521 0124578888876655 3343321 23344566654555544222
Q ss_pred --CCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEE---EeCCCCceeE-----EEecCCCCcc
Q psy6570 93 --IKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIES---INLNGKDRFV-----VYHTEDNGYK 162 (713)
Q Consensus 93 --~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~---~~~~g~~~~~-----~~~~~~~~~~ 162 (713)
..+.|++..+++...+. .--..+..|.+.+++.+|.+.-. ++|+. ...++..+++ +.. .+..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~--g~v~Va~Vvr~~~G~~~l~~~~~l~~---~l~~ 497 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG--GKVYLAVVEQTEDGQYALTNPREVGP---GLGD 497 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC--CEEEEEEEEeCCCCceeecccEEeec---ccCC
Confidence 12355555555543322 11134788999999998887653 46766 4444443333 211 1222
Q ss_pred -ceeeeee-CCeEEEEeCC-CCcEEEEcccCCCc
Q psy6570 163 -PYKLEVF-EDNLYFSTYR-TNNILKINKFGNSD 193 (713)
Q Consensus 163 -p~~i~~~-~~~ly~td~~-~~~i~~~~~~~~~~ 193 (713)
+..++.. ++.|++.... ...|++++.+|...
T Consensus 498 ~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~ 531 (591)
T PRK13616 498 TAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNS 531 (591)
T ss_pred ccccceEecCCEEEEEecCCCCceEEEecCCccc
Confidence 3556544 5567765433 34478888776543
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=90.85 E-value=26 Score=39.63 Aligned_cols=125 Identities=10% Similarity=0.048 Sum_probs=63.1
Q ss_pred CCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCC-CCc
Q psy6570 71 LNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLN-GKD 149 (713)
Q Consensus 71 ~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~-g~~ 149 (713)
+.....|++.| +|.+..|..... +|.+-+.....-.+-+......-+++.+. ..++..++-.-.++|+..|+. ..+
T Consensus 350 ~~~i~~l~YSp-Dgq~iaTG~eDg-KVKvWn~~SgfC~vTFteHts~Vt~v~f~-~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 350 SDRITSLAYSP-DGQLIATGAEDG-KVKVWNTQSGFCFVTFTEHTSGVTAVQFT-ARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred ccceeeEEECC-CCcEEEeccCCC-cEEEEeccCceEEEEeccCCCceEEEEEE-ecCCEEEEeecCCeEEeeeecccce
Confidence 44556677765 455555554333 56655555444444444444555777777 344555555555666666653 233
Q ss_pred eeEEEecCCCCccceeeeee--CCeEEEEeCCCCcEEEEcccCCCcceeeecc
Q psy6570 150 RFVVYHTEDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKFGNSDFNVLANN 200 (713)
Q Consensus 150 ~~~~~~~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~ 200 (713)
-+++.... ..+-.-|+++ ++-+...+...-.|+.++...+....++..+
T Consensus 427 fRTft~P~--p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGH 477 (893)
T KOG0291|consen 427 FRTFTSPE--PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGH 477 (893)
T ss_pred eeeecCCC--ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCC
Confidence 33333221 1111234454 4444444444445666666666555555544
|
|
| >PHA02887 EGF-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.65 E-value=0.27 Score=41.06 Aligned_cols=33 Identities=39% Similarity=1.013 Sum_probs=25.1
Q ss_pred CCCCCCCeecCCCCccCCCCCceeeCCCCcccCCCCcc
Q psy6570 634 HFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTL 671 (713)
Q Consensus 634 ~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~~ 671 (713)
+.|.+ |+|... .......|.|+.||+|.+|+..
T Consensus 92 ~YCiH-G~C~yI----~dL~epsCrC~~GYtG~RCE~v 124 (126)
T PHA02887 92 DFCIN-GECMNI----IDLDEKFCICNKGYTGIRCDEV 124 (126)
T ss_pred CEeeC-CEEEcc----ccCCCceeECCCCcccCCCCcc
Confidence 56774 799862 3344589999999999999864
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=90.49 E-value=1.8 Score=43.96 Aligned_cols=143 Identities=12% Similarity=0.108 Sum_probs=87.1
Q ss_pred CCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCce-EEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecC
Q psy6570 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK-KRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASID 103 (713)
Q Consensus 25 ~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~-~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~d 103 (713)
......+.+.+..-.|..+-. ....|..+|+.... .+.++. . .+++.|...| +.+.|++..... .|+..+|.
T Consensus 187 ~Dti~svkfNpvETsILas~~---sDrsIvLyD~R~~~Pl~KVi~-~-mRTN~IswnP-eafnF~~a~ED~-nlY~~DmR 259 (433)
T KOG0268|consen 187 ADSISSVKFNPVETSILASCA---SDRSIVLYDLRQASPLKKVIL-T-MRTNTICWNP-EAFNFVAANEDH-NLYTYDMR 259 (433)
T ss_pred CCceeEEecCCCcchheeeec---cCCceEEEecccCCccceeee-e-ccccceecCc-cccceeeccccc-cceehhhh
Confidence 334456666666555555443 46678888875433 333332 2 5799999999 889999876655 78888775
Q ss_pred CCCcEEEE-eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEE
Q psy6570 104 GKNKFNLV-DNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFS 176 (713)
Q Consensus 104 G~~~~~l~-~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~t 176 (713)
--.+-.-+ ......-..+.++| .+.=|++-+....|+.+..+.+.-+.+.... ++.+.+++.+.-+.-|+.
T Consensus 260 ~l~~p~~v~~dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Dskyi~ 331 (433)
T KOG0268|consen 260 NLSRPLNVHKDHVSAVMDVDFSP-TGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDSKYII 331 (433)
T ss_pred hhcccchhhcccceeEEEeccCC-CcchhccccccceEEEeecCCCcchhhhhHh-hhheeeEEEEeccccEEE
Confidence 43322222 11222334455554 5677888888888999988765544443221 356777777764444443
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=90.28 E-value=16 Score=39.62 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=79.9
Q ss_pred CCceeEEEccCcc---cEEecCCCCCc---eEEEeccCCeEEEeecCCCCC-CeEEEEecCCc-----eEEEEEcCCCCC
Q psy6570 6 SGNVTRVKREMNL---KTVLSNLHDPR---GVAVDWVGKNLYWTDAGGRSS-NNIMVSTLEGR-----KKRTLLNTGLNE 73 (713)
Q Consensus 6 ~~~I~~~~~~~~~---~~~~~~~~~p~---gla~D~~~~~ly~td~~~~~~-~~I~~~~~~G~-----~~~~l~~~~~~~ 73 (713)
..+|++..+++.. ++|......+. ++.+...++.|++.-... .. ..|++.+++.. ..+.+.. ....
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~-~~~s~v~~~d~~~~~~~~~~~~~l~~-~~~~ 278 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG-TSESEVYLLDLDDGGSPDAKPKLLSP-REDG 278 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS-SSEEEEEEEECCCTTTSS-SEEEEEE-SSSS
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc-ccCCeEEEEeccccCCCcCCcEEEeC-CCCc
Confidence 4567777887643 25556656665 667777777777755432 23 67889998764 3333332 2222
Q ss_pred cceEEEcCCCCcEEE-EccC-CCCeEEEEecCCCCc---E-EEEeCC-CCCCeeEEEeCCCCeEEEEcC--CCCcEEEEe
Q psy6570 74 PYDIALEPLSGRMFW-TELG-IKPRISGASIDGKNK---F-NLVDNN-IQWPTGITIDYPSQRLYWADP--KARTIESIN 144 (713)
Q Consensus 74 p~~iavD~~~~~ly~-td~~-~~~~I~~~~~dG~~~---~-~l~~~~-~~~p~glavd~~~~~LY~~d~--~~~~I~~~~ 144 (713)
... .++..++.||+ |+.+ .+.+|.+++++.... . +++... -....++.+. .++|++... ...+|..++
T Consensus 279 ~~~-~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 279 VEY-YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp -EE-EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEE
T ss_pred eEE-EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEE
Confidence 222 23334666665 5543 346899999887663 3 444322 1234556665 778888764 455789999
Q ss_pred CC-CCceeEE
Q psy6570 145 LN-GKDRFVV 153 (713)
Q Consensus 145 ~~-g~~~~~~ 153 (713)
++ +.....+
T Consensus 356 ~~~~~~~~~~ 365 (414)
T PF02897_consen 356 LDDGKESREI 365 (414)
T ss_dssp TT-TEEEEEE
T ss_pred CCCCcEEeee
Confidence 98 5444443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=90.14 E-value=15 Score=41.58 Aligned_cols=165 Identities=12% Similarity=0.093 Sum_probs=98.7
Q ss_pred ceeEEEccCcccEEecCCCCC---ceEEEeccCCeEEEeecCC---CCCCeEEEEecCCceEEEEEcCCCCCcc-eEEEc
Q psy6570 8 NVTRVKREMNLKTVLSNLHDP---RGVAVDWVGKNLYWTDAGG---RSSNNIMVSTLEGRKKRTLLNTGLNEPY-DIALE 80 (713)
Q Consensus 8 ~I~~~~~~~~~~~~~~~~~~p---~gla~D~~~~~ly~td~~~---~~~~~I~~~~~~G~~~~~l~~~~~~~p~-~iavD 80 (713)
.+..+++..+.......+..| .++++ .++.||++-... .....+.++|+....=.. ...+..++ ++++-
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~--~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~--~a~M~~~R~~~~v~ 377 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCRVGVAV--LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP--VAPMNTKRSDFGVA 377 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccccccEEE--ECCEEEEEccccCCCcccceEEEecCCCCceec--cCCccCccccceeE
Confidence 344455555433333333333 44555 578999985422 133668888887654222 23455555 23333
Q ss_pred CCCCcEEEEccCC----CCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcC------CCCcEEEEeCCCCce
Q psy6570 81 PLSGRMFWTELGI----KPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADP------KARTIESINLNGKDR 150 (713)
Q Consensus 81 ~~~~~ly~td~~~----~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~------~~~~I~~~~~~g~~~ 150 (713)
..+|.||+..-.. ...|++.+.....=..+..... .-.+.++-..+++||++-. ....++++|.....-
T Consensus 378 ~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W 456 (571)
T KOG4441|consen 378 VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW 456 (571)
T ss_pred EECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce
Confidence 4789999975221 2368888887655444443222 2244455455899999963 335788888887766
Q ss_pred eEEEecCCCCccceeeeeeCCeEEEEeC
Q psy6570 151 FVVYHTEDNGYKPYKLEVFEDNLYFSTY 178 (713)
Q Consensus 151 ~~~~~~~~~~~~p~~i~~~~~~ly~td~ 178 (713)
+.+..... ....+++++.+++||+.-.
T Consensus 457 ~~~~~M~~-~R~~~g~a~~~~~iYvvGG 483 (571)
T KOG4441|consen 457 TLIAPMNT-RRSGFGVAVLNGKIYVVGG 483 (571)
T ss_pred eecCCccc-ccccceEEEECCEEEEECC
Confidence 66655433 3455788999999999853
|
|
| >smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai | Back alignment and domain information |
|---|
Probab=90.11 E-value=0.33 Score=34.06 Aligned_cols=29 Identities=41% Similarity=1.240 Sum_probs=21.7
Q ss_pred eeecCCCCCeecCCCCccCCCCCCccccCCCCCCcccCCCCccC
Q psy6570 462 ECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSG 505 (713)
Q Consensus 462 ~C~~~~~~~~C~C~~G~~g~~C~~~~C~~~~~~~~C~C~~G~~g 505 (713)
.|....| +|.|.++|+|+.|+. |++||+|
T Consensus 12 ~C~~~~G--~C~C~~~~~G~~C~~-------------C~~g~~g 40 (46)
T smart00180 12 TCDPDTG--QCECKPNVTGRRCDR-------------CAPGYYG 40 (46)
T ss_pred cccCCCC--EEECCCCCCCCCCCc-------------CCCCcCC
Confidence 3444333 899999999999885 7788887
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=90.09 E-value=3.6 Score=45.78 Aligned_cols=169 Identities=9% Similarity=-0.017 Sum_probs=95.3
Q ss_pred EEEeccCCeEEEeecCCCCCCeEEEEecCCceEE--EEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcE
Q psy6570 31 VAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKR--TLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKF 108 (713)
Q Consensus 31 la~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~--~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~ 108 (713)
++++..+.+||-+-. ++|...+.....+. ...........+++|+|.+..||.+-.+.- |...+++.....
T Consensus 25 ~~~s~nG~~L~t~~~-----d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~l--lrv~~L~tgk~i 97 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACG-----DRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQL--LRVWSLPTGKLI 97 (775)
T ss_pred eeECCCCCEEEEecC-----ceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccce--EEEEEcccchHh
Confidence 899988888885543 56666666544432 122233566789999998888888765533 444455433222
Q ss_pred EEEeC-CCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccce-eeeeeCCeEE---EEeCCCCcE
Q psy6570 109 NLVDN-NIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPY-KLEVFEDNLY---FSTYRTNNI 183 (713)
Q Consensus 109 ~l~~~-~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~-~i~~~~~~ly---~td~~~~~i 183 (713)
..... .-.....+++|+.. .|.-+-...++|.+-++.+...+.-+.. .+.+. .+.+....++ .+....+.|
T Consensus 98 rswKa~He~Pvi~ma~~~~g-~LlAtggaD~~v~VWdi~~~~~th~fkG---~gGvVssl~F~~~~~~~lL~sg~~D~~v 173 (775)
T KOG0319|consen 98 RSWKAIHEAPVITMAFDPTG-TLLATGGADGRVKVWDIKNGYCTHSFKG---HGGVVSSLLFHPHWNRWLLASGATDGTV 173 (775)
T ss_pred HhHhhccCCCeEEEEEcCCC-ceEEeccccceEEEEEeeCCEEEEEecC---CCceEEEEEeCCccchhheeecCCCceE
Confidence 22211 22233578999765 4444444567788888887766555544 23333 3444455444 444556667
Q ss_pred EEEcccCCCc-ceeeeccccccccEEEE
Q psy6570 184 LKINKFGNSD-FNVLANNLNRASDVLIL 210 (713)
Q Consensus 184 ~~~~~~~~~~-~~~~~~~~~~~~~i~v~ 210 (713)
+..+...... ..++....+..++|.+.
T Consensus 174 ~vwnl~~~~tcl~~~~~H~S~vtsL~~~ 201 (775)
T KOG0319|consen 174 RVWNLNDKRTCLHTMILHKSAVTSLAFS 201 (775)
T ss_pred EEEEcccCchHHHHHHhhhhheeeeeec
Confidence 7666553333 33334444445554443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.06 E-value=11 Score=42.77 Aligned_cols=165 Identities=11% Similarity=0.104 Sum_probs=87.3
Q ss_pred CceeEEEccCcccEEecCCCCCc-eEEEeccCCeEEEeecCC--CCCCeEEEEecCCceEEEEEcCCCCCcc---eEEEc
Q psy6570 7 GNVTRVKREMNLKTVLSNLHDPR-GVAVDWVGKNLYWTDAGG--RSSNNIMVSTLEGRKKRTLLNTGLNEPY---DIALE 80 (713)
Q Consensus 7 ~~I~~~~~~~~~~~~~~~~~~p~-gla~D~~~~~ly~td~~~--~~~~~I~~~~~~G~~~~~l~~~~~~~p~---~iavD 80 (713)
..+.++++..+.-..+..+..|+ ..++-..+++||+.-... .....+.++++....=..+ ..+..|. ++++
T Consensus 320 ~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~--~~mp~~r~~~~~~~- 396 (557)
T PHA02713 320 NKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML--PDMPIALSSYGMCV- 396 (557)
T ss_pred ceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC--CCCCcccccccEEE-
Confidence 45667777665433344555553 222223568999875421 1134588888765432222 2333333 2333
Q ss_pred CCCCcEEEEccCC----------------------CCeEEEEecCCCCcEEEEeCCC-CCCeeEEEeCCCCeEEEEcCC-
Q psy6570 81 PLSGRMFWTELGI----------------------KPRISGASIDGKNKFNLVDNNI-QWPTGITIDYPSQRLYWADPK- 136 (713)
Q Consensus 81 ~~~~~ly~td~~~----------------------~~~I~~~~~dG~~~~~l~~~~~-~~p~glavd~~~~~LY~~d~~- 136 (713)
.+++||+..... ...+++.++....=+.+..... ....++++- +++||+.-..
T Consensus 397 -~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~ 473 (557)
T PHA02713 397 -LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIK 473 (557)
T ss_pred -ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCC
Confidence 478999974221 1246666665432222221111 112244443 6899998532
Q ss_pred -----CCcEEEEeCCC-CceeEEEecCCCCccceeeeeeCCeEEEEeC
Q psy6570 137 -----ARTIESINLNG-KDRFVVYHTEDNGYKPYKLEVFEDNLYFSTY 178 (713)
Q Consensus 137 -----~~~I~~~~~~g-~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~ 178 (713)
...|++++++. ..-+.+..... ...-.++++.+++||++-.
T Consensus 474 ~~~~~~~~ve~Ydp~~~~~W~~~~~m~~-~r~~~~~~~~~~~iyv~Gg 520 (557)
T PHA02713 474 DEKNVKTCIFRYNTNTYNGWELITTTES-RLSALHTILHDNTIMMLHC 520 (557)
T ss_pred CCCccceeEEEecCCCCCCeeEccccCc-ccccceeEEECCEEEEEee
Confidence 13478888876 44444443322 2344788888999999853
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=90.06 E-value=8.9 Score=43.51 Aligned_cols=135 Identities=16% Similarity=0.136 Sum_probs=75.8
Q ss_pred cCCceeEEEccCcccEE-e----cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEE
Q psy6570 5 SSGNVTRVKREMNLKTV-L----SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIAL 79 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~~~-~----~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iav 79 (713)
..|.|-++++......- . ..-....|||+|-. +++.++-. ..+.+...+.+++....-++.+ ..+..|+.
T Consensus 468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~-n~~~vsa~---~~Gilkfw~f~~k~l~~~l~l~-~~~~~iv~ 542 (910)
T KOG1539|consen 468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT-NRLLVSAG---ADGILKFWDFKKKVLKKSLRLG-SSITGIVY 542 (910)
T ss_pred cCCeEEEEEcccCeeecccccCccccCceeEEEecCC-CceEEEcc---CcceEEEEecCCcceeeeeccC-CCcceeee
Confidence 47888899888654221 1 23345689999965 55556655 5677777777776533222222 23344444
Q ss_pred cCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC
Q psy6570 80 EPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNG 147 (713)
Q Consensus 80 D~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g 147 (713)
....+ |+...-..- .|..+++-.......+....++.+.+++++++++|..+.. ...|+..|+-.
T Consensus 543 hr~s~-l~a~~~ddf-~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasm-D~tIr~wDlpt 607 (910)
T KOG1539|consen 543 HRVSD-LLAIALDDF-SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASM-DSTIRTWDLPT 607 (910)
T ss_pred eehhh-hhhhhcCce-eEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeec-CCcEEEEeccC
Confidence 32222 222221212 5666655433222223334556789999999999988874 34566666543
|
|
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=89.72 E-value=9.8 Score=37.77 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=67.3
Q ss_pred CCceeEEEccCcccEEecCCCC---------------CceEEEeccCCe--EEEeecCCCCCCeEEEEecCCceEEE--E
Q psy6570 6 SGNVTRVKREMNLKTVLSNLHD---------------PRGVAVDWVGKN--LYWTDAGGRSSNNIMVSTLEGRKKRT--L 66 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~~~~~---------------p~gla~D~~~~~--ly~td~~~~~~~~I~~~~~~G~~~~~--l 66 (713)
+..|.|+++.+........|.. =-.||+|.. +. ||-+.. ..+.|.+..||-....+ .
T Consensus 93 s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~-GLWvIYat~~---~~g~ivvSkLnp~tL~ve~t 168 (255)
T smart00284 93 SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDEN-GLWVIYATEQ---NAGKIVISKLNPATLTIENT 168 (255)
T ss_pred CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCC-ceEEEEeccC---CCCCEEEEeeCcccceEEEE
Confidence 5678899988765432222211 146888843 32 333343 56778877777544333 3
Q ss_pred EcCCCCCcc---eEEEcCCCCcEEEEccCC--CCeEE-EEecCCCCcEEE---EeCCCCCCeeEEEeCCCCeEEEEcCC
Q psy6570 67 LNTGLNEPY---DIALEPLSGRMFWTELGI--KPRIS-GASIDGKNKFNL---VDNNIQWPTGITIDYPSQRLYWADPK 136 (713)
Q Consensus 67 ~~~~~~~p~---~iavD~~~~~ly~td~~~--~~~I~-~~~~dG~~~~~l---~~~~~~~p~glavd~~~~~LY~~d~~ 136 (713)
......++. +.. .=|.||++++.. ..+|. ..++.......+ +......-..|..+|.+++||.=|-+
T Consensus 169 W~T~~~k~sa~naFm---vCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wdng 244 (255)
T smart00284 169 WITTYNKRSASNAFM---ICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWNNG 244 (255)
T ss_pred EEcCCCcccccccEE---EeeEEEEEccCCCCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEeCC
Confidence 333333332 233 358999998632 22444 345544332221 12233344568888999999987743
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=89.51 E-value=21 Score=35.53 Aligned_cols=139 Identities=14% Similarity=0.095 Sum_probs=73.8
Q ss_pred cCCeEEEeecCCCCCCeEEEEec------CCceEEE-EEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcE
Q psy6570 36 VGKNLYWTDAGGRSSNNIMVSTL------EGRKKRT-LLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKF 108 (713)
Q Consensus 36 ~~~~ly~td~~~~~~~~I~~~~~------~G~~~~~-l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~ 108 (713)
..+++||++.. ..+.|..+.. .++..+. .+... -.-.|.+| .+|.||+--.+.. .|.|.++......
T Consensus 29 ~~~~iy~~~~~--~~~~v~ey~~~~~f~~~~~~~~~~~Lp~~-~~GtG~vV--YngslYY~~~~s~-~IvkydL~t~~v~ 102 (250)
T PF02191_consen 29 DSEKIYVTSGF--SGNTVYEYRNYEDFLRNGRSSRTYKLPYP-WQGTGHVV--YNGSLYYNKYNSR-NIVKYDLTTRSVV 102 (250)
T ss_pred CCCCEEEECcc--CCCEEEEEcCHhHHhhcCCCceEEEEece-eccCCeEE--ECCcEEEEecCCc-eEEEEECcCCcEE
Confidence 46789999874 2345554432 2222222 22211 22234555 5799999887666 9999999876655
Q ss_pred -EEEe--CCCC----------CCeeEEEeCCCCeEEEE-cCCCCcEEEEeCCCCceeEEEecCCCCccceeee--eeCCe
Q psy6570 109 -NLVD--NNIQ----------WPTGITIDYPSQRLYWA-DPKARTIESINLNGKDRFVVYHTEDNGYKPYKLE--VFEDN 172 (713)
Q Consensus 109 -~l~~--~~~~----------~p~glavd~~~~~LY~~-d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~--~~~~~ 172 (713)
.... .... .=-.||+|..+=++..+ ....+.|....+|-....+...-......+..-. +.=+-
T Consensus 103 ~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~~~k~~~~naFmvCGv 182 (250)
T PF02191_consen 103 ARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTSYPKRSAGNAFMVCGV 182 (250)
T ss_pred EEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEeccCchhhcceeeEeeE
Confidence 2221 1111 11468888433333333 4444567666666554444433222233332222 23678
Q ss_pred EEEEeCCC
Q psy6570 173 LYFSTYRT 180 (713)
Q Consensus 173 ly~td~~~ 180 (713)
||.++...
T Consensus 183 LY~~~s~~ 190 (250)
T PF02191_consen 183 LYATDSYD 190 (250)
T ss_pred EEEEEECC
Confidence 99998664
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=89.48 E-value=28 Score=35.90 Aligned_cols=144 Identities=13% Similarity=0.111 Sum_probs=73.8
Q ss_pred cCCeEEEeecCCCCCCeEEEEecCCce-EEEEEcCCCCCcce-EEEcCCCC--cEEEEccCCCCeEEEEecCCCCcEEEE
Q psy6570 36 VGKNLYWTDAGGRSSNNIMVSTLEGRK-KRTLLNTGLNEPYD-IALEPLSG--RMFWTELGIKPRISGASIDGKNKFNLV 111 (713)
Q Consensus 36 ~~~~ly~td~~~~~~~~I~~~~~~G~~-~~~l~~~~~~~p~~-iavD~~~~--~ly~td~~~~~~I~~~~~dG~~~~~l~ 111 (713)
.+++|.|.-. ..|++++++.=. ..+|. ..-..|.| +|+.+... +|-+-+..+.+.|..++...-.....+
T Consensus 96 Nr~RLvV~Le-----e~IyIydI~~MklLhTI~-t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I 169 (391)
T KOG2110|consen 96 NRKRLVVCLE-----ESIYIYDIKDMKLLHTIE-TTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI 169 (391)
T ss_pred ccceEEEEEc-----ccEEEEecccceeehhhh-ccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE
Confidence 3445555443 348888876521 22222 11135664 45555555 444434444568888888765555555
Q ss_pred eCCCCCCeeEEEeCCCCeEEEEcCCCCcE-EEEeC-CCCceeEEEecCCCCccceeeeeeCCeEEE-EeCCCCcEEEEc
Q psy6570 112 DNNIQWPTGITIDYPSQRLYWADPKARTI-ESINL-NGKDRFVVYHTEDNGYKPYKLEVFEDNLYF-STYRTNNILKIN 187 (713)
Q Consensus 112 ~~~~~~p~glavd~~~~~LY~~d~~~~~I-~~~~~-~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~-td~~~~~i~~~~ 187 (713)
...-..-..|||+++ +.|.-+-+..++| +++.. +|.....+..... ...-+.|++..+.-|. +...+..|..+.
T Consensus 170 ~aH~~~lAalafs~~-G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 170 NAHKGPLAALAFSPD-GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-PVSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred EecCCceeEEEECCC-CCEEEEeccCceEEEEEEcCCccEeeeeeCCce-eeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 544445578999965 5555555566664 44554 4444444433211 2223556665433233 334455554443
|
|
| >PF15102 TMEM154: TMEM154 protein family | Back alignment and domain information |
|---|
Probab=89.48 E-value=0.37 Score=42.56 Aligned_cols=14 Identities=29% Similarity=0.646 Sum_probs=5.5
Q ss_pred chhHHHHHHHHHHH
Q psy6570 684 SHISSILILILLLI 697 (713)
Q Consensus 684 ~~~~~~~~~~~~~~ 697 (713)
.++++.++++|||+
T Consensus 60 mIlIP~VLLvlLLl 73 (146)
T PF15102_consen 60 MILIPLVLLVLLLL 73 (146)
T ss_pred EEeHHHHHHHHHHH
Confidence 34444333333333
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=89.47 E-value=7.4 Score=44.07 Aligned_cols=168 Identities=13% Similarity=0.097 Sum_probs=101.6
Q ss_pred CCceeEEEccCcccEEecCCCCCc-eEEEeccCCeEEEeecCC--CCCCeEEEEecCCceEEEEEcCCCCCcc-eEEEcC
Q psy6570 6 SGNVTRVKREMNLKTVLSNLHDPR-GVAVDWVGKNLYWTDAGG--RSSNNIMVSTLEGRKKRTLLNTGLNEPY-DIALEP 81 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~~~~~p~-gla~D~~~~~ly~td~~~--~~~~~I~~~~~~G~~~~~l~~~~~~~p~-~iavD~ 81 (713)
...+.++++..+.-+.+..+..++ ++++-...+.||+.-... .....|.++++....=..+. .+..++ +.++-.
T Consensus 348 l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va--~m~~~r~~~gv~~ 425 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA--PMLTRRSGHGVAV 425 (571)
T ss_pred cceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccC--CCCcceeeeEEEE
Confidence 456778888876544455555553 344555789999875421 23456888888775433322 222222 344444
Q ss_pred CCCcEEEEccCCC-----CeEEEEecCCCCcEEEEeCCC-CCCeeEEEeCCCCeEEEEcC-----CCCcEEEEeCCCCce
Q psy6570 82 LSGRMFWTELGIK-----PRISGASIDGKNKFNLVDNNI-QWPTGITIDYPSQRLYWADP-----KARTIESINLNGKDR 150 (713)
Q Consensus 82 ~~~~ly~td~~~~-----~~I~~~~~dG~~~~~l~~~~~-~~p~glavd~~~~~LY~~d~-----~~~~I~~~~~~g~~~ 150 (713)
.+|+||.+.-... ..+++.++....=+.+..... ..-.|+++- +++||+.-. ...+|+++++....-
T Consensus 426 ~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 426 LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCce
Confidence 7899999863211 367777776544333332211 122345554 899999853 234588999888777
Q ss_pred eEEEecCCCCccceeeeeeCCeEEEEeC
Q psy6570 151 FVVYHTEDNGYKPYKLEVFEDNLYFSTY 178 (713)
Q Consensus 151 ~~~~~~~~~~~~p~~i~~~~~~ly~td~ 178 (713)
+.+.... ......++++.++.||++-.
T Consensus 504 ~~v~~m~-~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 504 TMVAPMT-SPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred eEcccCc-cccccccEEEECCEEEEEec
Confidence 7764332 24566788999999999853
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=89.37 E-value=26 Score=37.66 Aligned_cols=156 Identities=16% Similarity=0.186 Sum_probs=88.0
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccC-CCCeEEEEecCCCC
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELG-IKPRISGASIDGKN 106 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~-~~~~I~~~~~dG~~ 106 (713)
|+-|+= ....||+.-+ .+.|+.-++......++.-.+ ..-.+||..|. ..+|.|-.. .+-+||+ +-+.
T Consensus 332 iRtv~e--~~~di~vGTt----rN~iL~Gt~~~~f~~~v~gh~-delwgla~hps-~~q~~T~gqdk~v~lW~---~~k~ 400 (626)
T KOG2106|consen 332 IRTVAE--GKGDILVGTT----RNFILQGTLENGFTLTVQGHG-DELWGLATHPS-KNQLLTCGQDKHVRLWN---DHKL 400 (626)
T ss_pred eeEEec--CCCcEEEeec----cceEEEeeecCCceEEEEecc-cceeeEEcCCC-hhheeeccCcceEEEcc---CCce
Confidence 444443 3344777654 577887777765544433232 57889999985 455665432 2224444 2221
Q ss_pred cEE-EEe-----CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCe--EEEEeC
Q psy6570 107 KFN-LVD-----NNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDN--LYFSTY 178 (713)
Q Consensus 107 ~~~-l~~-----~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~--ly~td~ 178 (713)
.-+ ++. .+++...-||+-..+++.++-|..+..+..+..++.....+.-.. ...-+++.-.++. ||..+.
T Consensus 401 ~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp--~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 401 EWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSP--DGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred eEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcC--CCCEEEEecCCCeEEEEEECC
Confidence 111 111 123333356777788899999988887778888855555443221 1122344444554 566777
Q ss_pred CCCcEEEEcccCCCccee
Q psy6570 179 RTNNILKINKFGNSDFNV 196 (713)
Q Consensus 179 ~~~~i~~~~~~~~~~~~~ 196 (713)
.+....++.+-.+..++-
T Consensus 479 ~g~~y~r~~k~~gs~ith 496 (626)
T KOG2106|consen 479 NGRKYSRVGKCSGSPITH 496 (626)
T ss_pred CCcEEEEeeeecCceeEE
Confidence 777777887766644433
|
|
| >COG3211 PhoX Predicted phosphatase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.18 E-value=3.1 Score=45.28 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=65.1
Q ss_pred ecCCCCCceEEEeccCCeEEEeecCCC-------------CCCeEEEEecCCc-------eEEEEEcC------------
Q psy6570 22 LSNLHDPRGVAVDWVGKNLYWTDAGGR-------------SSNNIMVSTLEGR-------KKRTLLNT------------ 69 (713)
Q Consensus 22 ~~~~~~p~gla~D~~~~~ly~td~~~~-------------~~~~I~~~~~~G~-------~~~~l~~~------------ 69 (713)
...+.+|++|++.+..+++|++...+. ..++|++....+. .-.+++..
T Consensus 413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~ 492 (616)
T COG3211 413 ATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASA 492 (616)
T ss_pred CccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccccc
Confidence 456789999999999999999887542 1245777666543 11122211
Q ss_pred -----CCCCcceEEEcCCCCcEEEEccCCC---CeEEEEe----cCCCCc--EEEEeCCC-CCCeeEEEeCCCCeEEEEc
Q psy6570 70 -----GLNEPYDIALEPLSGRMFWTELGIK---PRISGAS----IDGKNK--FNLVDNNI-QWPTGITIDYPSQRLYWAD 134 (713)
Q Consensus 70 -----~~~~p~~iavD~~~~~ly~td~~~~---~~I~~~~----~dG~~~--~~l~~~~~-~~p~glavd~~~~~LY~~d 134 (713)
.+..|.+|++|+..+++..||.... .++.-+. .++... +.++...+ ---.|+++.++.+.||+.-
T Consensus 493 ~~~~~~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~v 572 (616)
T COG3211 493 NINANWFNSPDNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNV 572 (616)
T ss_pred CcccccccCCCceEECCCCCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEe
Confidence 1445999999986554555564321 1111111 122111 11111111 2346889998888898875
Q ss_pred C
Q psy6570 135 P 135 (713)
Q Consensus 135 ~ 135 (713)
.
T Consensus 573 Q 573 (616)
T COG3211 573 Q 573 (616)
T ss_pred c
Confidence 3
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=89.03 E-value=2.6 Score=45.75 Aligned_cols=124 Identities=11% Similarity=0.158 Sum_probs=76.0
Q ss_pred EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEE
Q psy6570 20 TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISG 99 (713)
Q Consensus 20 ~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~ 99 (713)
+++...+....|.+...++.|-.+... ..+..|++.+|.-.....-++..-..|..+.+.|..-+||++... .|..
T Consensus 516 ~~I~~~k~i~~vtWHrkGDYlatV~~~-~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~---~vRi 591 (733)
T KOG0650|consen 516 IVIKHPKSIRQVTWHRKGDYLATVMPD-SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR---SVRI 591 (733)
T ss_pred EEEecCCccceeeeecCCceEEEeccC-CCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc---ceEE
Confidence 345555556666665554444333221 134556666665433332222233568889999999999998865 4555
Q ss_pred EecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCC
Q psy6570 100 ASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGK 148 (713)
Q Consensus 100 ~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~ 148 (713)
.++.-+....-+.++..+...|+|++.++.|++.. ..+++-+++++-+
T Consensus 592 YdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs-~d~k~~WfDldls 639 (733)
T KOG0650|consen 592 YDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS-YDKKMCWFDLDLS 639 (733)
T ss_pred EehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec-CCCeeEEEEcccC
Confidence 55543332222235678889999999888888765 4567888888765
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=88.99 E-value=25 Score=38.75 Aligned_cols=138 Identities=14% Similarity=0.087 Sum_probs=78.9
Q ss_pred CcccCCceeEEEccCcccEE-ecCCCCC-ceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEE
Q psy6570 2 ASISSGNVTRVKREMNLKTV-LSNLHDP-RGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIAL 79 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~~~~-~~~~~~p-~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iav 79 (713)
+...+|++...+-+++..+- +..-..| +.-.|-. ....+++-+ ...+|.+++.+.-.+...+..-....+.|||
T Consensus 30 a~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia-RknWiv~Gs---DD~~IrVfnynt~ekV~~FeAH~DyIR~iav 105 (794)
T KOG0276|consen 30 AALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGS---DDMQIRVFNYNTGEKVKTFEAHSDYIRSIAV 105 (794)
T ss_pred EeeecCeeEEEecccceeeeeeeecccchhhheeee-ccceEEEec---CCceEEEEecccceeeEEeeccccceeeeee
Confidence 34456666666666544322 1111222 2222222 233444544 5678999999876655555555578999999
Q ss_pred cCCCCcEEEEccCCCCeEEEEecCCCCcEE-EEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeC
Q psy6570 80 EPLSGRMFWTELGIKPRISGASIDGKNKFN-LVDNNIQWPTGITIDYPSQRLYWADPKARTIESINL 145 (713)
Q Consensus 80 D~~~~~ly~td~~~~~~I~~~~~dG~~~~~-l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~ 145 (713)
.|..-++ .|.+... .|..-+-++.-... .+....++...|+|.|.+..-|.+-.-.+.|-+-++
T Consensus 106 HPt~P~v-LtsSDDm-~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWsl 170 (794)
T KOG0276|consen 106 HPTLPYV-LTSSDDM-TIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSL 170 (794)
T ss_pred cCCCCeE-EecCCcc-EEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEc
Confidence 9854333 3333333 56666666654433 334456677889999988888877655554444333
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=88.89 E-value=4 Score=42.92 Aligned_cols=112 Identities=11% Similarity=0.041 Sum_probs=58.6
Q ss_pred cceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcC--CCCcEEEEeCCCCcee
Q psy6570 74 PYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADP--KARTIESINLNGKDRF 151 (713)
Q Consensus 74 p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~--~~~~I~~~~~~g~~~~ 151 (713)
-.++.+...++.+|+.+.-....++-.+++|+....+.... ....+|++.|...+++.+-. .+.+||-+.--+..+.
T Consensus 282 fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~-kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s 360 (498)
T KOG4328|consen 282 FSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK-KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS 360 (498)
T ss_pred eeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhh-cccceeecCCCCchheeecccCcceeeeehhhhcCCCC
Confidence 34555555666666655332436666677777544433212 26789999998888777754 3445665553333332
Q ss_pred EEEecCCCCccceeeeee---CCeEEEEeCCCCcEEEEcc
Q psy6570 152 VVYHTEDNGYKPYKLEVF---EDNLYFSTYRTNNILKINK 188 (713)
Q Consensus 152 ~~~~~~~~~~~p~~i~~~---~~~ly~td~~~~~i~~~~~ 188 (713)
.++.... ...+..-++| ++. .++....+.|..++.
T Consensus 361 p~lst~~-HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 361 PFLSTLP-HRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDS 398 (498)
T ss_pred cceeccc-ccceeeeeEEcCCCCc-eEeeccCCceEEeec
Confidence 2222211 1223322333 445 444455556665553
|
|
| >PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein | Back alignment and domain information |
|---|
Probab=88.86 E-value=0.2 Score=32.79 Aligned_cols=25 Identities=32% Similarity=0.862 Sum_probs=12.9
Q ss_pred CCCCCCcEEeecC-CCceeeCCCCCc
Q psy6570 558 NYCSNNGTCVLIE-GKPSCKCLPPYS 582 (713)
Q Consensus 558 ~~C~~~~~C~~~~-g~~~C~C~~G~~ 582 (713)
..|..++.|.+.. |++.|.|..||.
T Consensus 5 ~~cP~NA~C~~~~dG~eecrCllgyk 30 (37)
T PF12946_consen 5 TKCPANAGCFRYDDGSEECRCLLGYK 30 (37)
T ss_dssp S---TTEEEEEETTSEEEEEE-TTEE
T ss_pred ccCCCCcccEEcCCCCEEEEeeCCcc
Confidence 3455566666654 666666666664
|
MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F. |
| >PHA02887 EGF-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.73 E-value=0.43 Score=39.87 Aligned_cols=30 Identities=30% Similarity=0.720 Sum_probs=22.3
Q ss_pred CCCCCeeec-CCCCCCeeecCCCcccCCccc
Q psy6570 315 DCNHGTCEF-DDDFDPHCICQENFYGTYCEK 344 (713)
Q Consensus 315 ~C~~~~C~~-~~~~~~~C~C~~g~~G~~C~~ 344 (713)
-|.||+|.. .+...+.|.|+.||+|..|+.
T Consensus 93 YCiHG~C~yI~dL~epsCrC~~GYtG~RCE~ 123 (126)
T PHA02887 93 FCINGECMNIIDLDEKFCICNKGYTGIRCDE 123 (126)
T ss_pred EeeCCEEEccccCCCceeECCCCcccCCCCc
Confidence 478888887 333457888888888888875
|
|
| >PTZ00214 high cysteine membrane protein Group 4; Provisional | Back alignment and domain information |
|---|
Probab=88.59 E-value=0.28 Score=57.01 Aligned_cols=21 Identities=24% Similarity=0.572 Sum_probs=13.8
Q ss_pred cceeecCCCcc----cCCCCcCCCC
Q psy6570 612 KPVCTCVNGWS----GITCSERVSC 632 (713)
Q Consensus 612 ~~~C~C~~G~~----G~~C~~~~~C 632 (713)
.-+|+|..||. +..|.....|
T Consensus 681 ~~~C~C~~g~~p~~~~~~C~~~~~C 705 (800)
T PTZ00214 681 VRRCWCERGFLPALDRSGCVLPTEC 705 (800)
T ss_pred cceeEecCCcccccCCCccccccCC
Confidence 34688998886 5567654444
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=88.51 E-value=45 Score=37.05 Aligned_cols=116 Identities=9% Similarity=0.047 Sum_probs=68.1
Q ss_pred CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceE-------EEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEE
Q psy6570 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKK-------RTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISG 99 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~-------~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~ 99 (713)
...+|++++..+.++++-. ..+.|.+.++..... ...+.........|++.|..+.++++-.... .|..
T Consensus 77 ~V~~v~fsP~d~~~LaSgS---~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg-tVrI 152 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTAS---EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM-VVNV 152 (493)
T ss_pred CEEEEEEcCCCCCEEEEEe---CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC-EEEE
Confidence 3467888774455555555 567788877653211 1112222345678999887666666544333 6777
Q ss_pred EecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC
Q psy6570 100 ASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNG 147 (713)
Q Consensus 100 ~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g 147 (713)
-++........+.........|++.+.. .++++-...+.|...|+..
T Consensus 153 WDl~tg~~~~~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rs 199 (493)
T PTZ00421 153 WDVERGKAVEVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRD 199 (493)
T ss_pred EECCCCeEEEEEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCC
Confidence 7766443333333333456789998754 4555555677788888753
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=88.50 E-value=5.8 Score=42.04 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=61.2
Q ss_pred ceEEEe-ccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccC---CCCeEEEEecC-
Q psy6570 29 RGVAVD-WVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELG---IKPRISGASID- 103 (713)
Q Consensus 29 ~gla~D-~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~---~~~~I~~~~~d- 103 (713)
..+.+- ..++.++|.-. ..+-..|.+++++|...+.|......--.-+.+|+.++.|||+... ....|++++++
T Consensus 238 ~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~ 316 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDS 316 (353)
T ss_dssp SEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTE
T ss_pred cccccccCCCCEEEEEEE-cCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCC
Confidence 344442 34555555444 2246789999999988776554432222358899999999998754 23489999999
Q ss_pred CCCcEEEEeCCCCCC-eeEEEeCCCCeEE
Q psy6570 104 GKNKFNLVDNNIQWP-TGITIDYPSQRLY 131 (713)
Q Consensus 104 G~~~~~l~~~~~~~p-~glavd~~~~~LY 131 (713)
+...+.|.. .... ..++|++..+.+.
T Consensus 317 ~~~~~~LT~--~~~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 317 GGEPKCLTC--EDGDHYSASFSPDGKYYV 343 (353)
T ss_dssp TTEEEESST--TSSTTEEEEE-TTSSEEE
T ss_pred CCCeEeccC--CCCCceEEEECCCCCEEE
Confidence 665555532 2222 4788886655443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=88.44 E-value=13 Score=39.35 Aligned_cols=183 Identities=14% Similarity=0.063 Sum_probs=89.7
Q ss_pred ccCCceeEEEccCcc-cEEecC---CCCCceEEEeccCCeEEEeecCCCCCCeEEEEec--CCceEEEEEcCCCCCcceE
Q psy6570 4 ISSGNVTRVKREMNL-KTVLSN---LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTL--EGRKKRTLLNTGLNEPYDI 77 (713)
Q Consensus 4 ~~~~~I~~~~~~~~~-~~~~~~---~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~--~G~~~~~l~~~~~~~p~~i 77 (713)
..+|.|...++++.. +++.+. -..-.++.+-...+.+|+.+. -+...++++ +|+....+.... .....|
T Consensus 254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~----~G~f~~iD~R~~~s~~~~~~lh~-kKI~sv 328 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN----VGNFNVIDLRTDGSEYENLRLHK-KKITSV 328 (498)
T ss_pred ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec----ccceEEEEeecCCccchhhhhhh-ccccee
Confidence 446666666666543 222221 111233444445566666654 233334443 444333222222 378999
Q ss_pred EEcCCCCcEEEEccCCC-CeEEEEecCCCCcEEEEe--CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCC--C---Cc
Q psy6570 78 ALEPLSGRMFWTELGIK-PRISGASIDGKNKFNLVD--NNIQWPTGITIDYPSQRLYWADPKARTIESINLN--G---KD 149 (713)
Q Consensus 78 avD~~~~~ly~td~~~~-~~I~~~~~dG~~~~~l~~--~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~--g---~~ 149 (713)
++.|...+++.|..... .+||-+.-=+.....++. ..-...+...++|.++.|.-+. ...+|+.++.. + ..
T Consensus 329 ~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~-~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 329 ALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC-QDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred ecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec-cCCceEEeecccccccCCc
Confidence 99999988888765432 257755322222221332 1233456777888888865554 44566666642 1 11
Q ss_pred eeEEEecCC--CCccceeeeee-CCeEEEEeCCCCcEEEEcccCCC
Q psy6570 150 RFVVYHTED--NGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNS 192 (713)
Q Consensus 150 ~~~~~~~~~--~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~ 192 (713)
...+..... ++..|+-..++ ...|+++-.....|-.++..++.
T Consensus 408 ~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 408 LGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred cceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 122222211 23344444443 23343444445556666655444
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=88.43 E-value=22 Score=35.42 Aligned_cols=136 Identities=15% Similarity=0.097 Sum_probs=72.7
Q ss_pred CCeEEEeecCCCCCCeEEEEecCCceEE-EEEcCC--C----------CCcceEEEcCCCCc-EEEEccCCCCeEEEEec
Q psy6570 37 GKNLYWTDAGGRSSNNIMVSTLEGRKKR-TLLNTG--L----------NEPYDIALEPLSGR-MFWTELGIKPRISGASI 102 (713)
Q Consensus 37 ~~~ly~td~~~~~~~~I~~~~~~G~~~~-~l~~~~--~----------~~p~~iavD~~~~~-ly~td~~~~~~I~~~~~ 102 (713)
++.||.--. ....|.++++..+.+. .+...+ . ..=.++|+| ++|+ +.++...+++.|.++.+
T Consensus 78 ngslYY~~~---~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvD-E~GLWvIYat~~~~g~ivvskl 153 (250)
T PF02191_consen 78 NGSLYYNKY---NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVD-ENGLWVIYATEDNNGNIVVSKL 153 (250)
T ss_pred CCcEEEEec---CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEc-CCCEEEEEecCCCCCcEEEEee
Confidence 578888777 6889999999987655 322211 1 112479999 5665 22233333336887777
Q ss_pred CCCCcEEE--EeCCCCCC---eeEEEeCCCCeEEEEcCCC---CcE-EEEeCCCCcee-EEEecCCCCccceeeeee--C
Q psy6570 103 DGKNKFNL--VDNNIQWP---TGITIDYPSQRLYWADPKA---RTI-ESINLNGKDRF-VVYHTEDNGYKPYKLEVF--E 170 (713)
Q Consensus 103 dG~~~~~l--~~~~~~~p---~glavd~~~~~LY~~d~~~---~~I-~~~~~~g~~~~-~~~~~~~~~~~p~~i~~~--~ 170 (713)
|-....+. ..+.+.++ +.+.+ =+.||.++... .+| +.+|+.-.... +-+...........|+.. +
T Consensus 154 d~~tL~v~~tw~T~~~k~~~~naFmv---CGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~d 230 (250)
T PF02191_consen 154 DPETLSVEQTWNTSYPKRSAGNAFMV---CGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRD 230 (250)
T ss_pred CcccCceEEEEEeccCchhhcceeeE---eeEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCC
Confidence 76544333 23333332 33444 48999998644 333 45665432222 212221122233334433 6
Q ss_pred CeEEEEeCC
Q psy6570 171 DNLYFSTYR 179 (713)
Q Consensus 171 ~~ly~td~~ 179 (713)
.+||.=|.+
T Consensus 231 k~LY~wd~G 239 (250)
T PF02191_consen 231 KKLYAWDNG 239 (250)
T ss_pred CeEEEEECC
Confidence 778875543
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation | Back alignment and domain information |
|---|
Probab=88.33 E-value=0.38 Score=34.31 Aligned_cols=32 Identities=41% Similarity=1.142 Sum_probs=22.9
Q ss_pred CeeecCCCCCeecCCCCccCCCCCCccccCCCCCCcccCCCCccCCC
Q psy6570 461 GECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKK 507 (713)
Q Consensus 461 ~~C~~~~~~~~C~C~~G~~g~~C~~~~C~~~~~~~~C~C~~G~~g~~ 507 (713)
..|....| +|.|.++|+|+.|+. |.+||++..
T Consensus 11 ~~C~~~~G--~C~C~~~~~G~~C~~-------------C~~g~~~~~ 42 (49)
T PF00053_consen 11 QTCDPSTG--QCVCKPGTTGPRCDQ-------------CKPGYFGLP 42 (49)
T ss_dssp SSEEETCE--EESBSTTEESTTS-E-------------E-TTEECST
T ss_pred CcccCCCC--EEeccccccCCcCcC-------------CCCcccccc
Confidence 45666444 899999999999985 778888754
|
They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A. |
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=88.29 E-value=29 Score=34.53 Aligned_cols=134 Identities=17% Similarity=0.096 Sum_probs=72.5
Q ss_pred CCeEEEeecCCCCCCeEEEEecCCceEE--EEEcC-C----------CCCcceEEEcCCCCc--EEEEccCCCCeEEEEe
Q psy6570 37 GKNLYWTDAGGRSSNNIMVSTLEGRKKR--TLLNT-G----------LNEPYDIALEPLSGR--MFWTELGIKPRISGAS 101 (713)
Q Consensus 37 ~~~ly~td~~~~~~~~I~~~~~~G~~~~--~l~~~-~----------~~~p~~iavD~~~~~--ly~td~~~~~~I~~~~ 101 (713)
++.||.... ....|.+++|..+.+. .++.. + ...-.++||| ++|+ ||-|.. +++.|..+.
T Consensus 83 ngslYY~~~---~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvD-E~GLWvIYat~~-~~g~ivvSk 157 (255)
T smart00284 83 NGSLYFNKF---NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVD-ENGLWVIYATEQ-NAGKIVISK 157 (255)
T ss_pred CceEEEEec---CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEc-CCceEEEEeccC-CCCCEEEEe
Confidence 588998776 6788999999987653 32321 1 1122479999 4665 333433 334788888
Q ss_pred cCCCCcEEEE--eCCCCCC---eeEEEeCCCCeEEEEcCC---CCc-EEEEeCCCCceeEE-EecCCCCccceeeee--e
Q psy6570 102 IDGKNKFNLV--DNNIQWP---TGITIDYPSQRLYWADPK---ART-IESINLNGKDRFVV-YHTEDNGYKPYKLEV--F 169 (713)
Q Consensus 102 ~dG~~~~~l~--~~~~~~p---~glavd~~~~~LY~~d~~---~~~-I~~~~~~g~~~~~~-~~~~~~~~~p~~i~~--~ 169 (713)
+|-....++- .+.+.++ +++.|= +.||++++. ..+ .+.+|...+....+ +........-..|+. .
T Consensus 158 Lnp~tL~ve~tW~T~~~k~sa~naFmvC---GvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~ 234 (255)
T smart00284 158 LNPATLTIENTWITTYNKRSASNAFMIC---GILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPN 234 (255)
T ss_pred eCcccceEEEEEEcCCCcccccccEEEe---eEEEEEccCCCCCcEEEEEEECCCCccceeeeeeccccccceeceeCCC
Confidence 8765554433 3333322 344444 799999852 223 45566655433222 111111112222443 3
Q ss_pred CCeEEEEeC
Q psy6570 170 EDNLYFSTY 178 (713)
Q Consensus 170 ~~~ly~td~ 178 (713)
+..||.=|.
T Consensus 235 d~~LY~wdn 243 (255)
T smart00284 235 DRKLYAWNN 243 (255)
T ss_pred CCeEEEEeC
Confidence 677887443
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=88.22 E-value=51 Score=37.26 Aligned_cols=119 Identities=10% Similarity=-0.002 Sum_probs=66.6
Q ss_pred CCCcceEEEcCCCCcEEEEccCCCCeEEEEecC--CCCc------EEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEE
Q psy6570 71 LNEPYDIALEPLSGRMFWTELGIKPRISGASID--GKNK------FNLVDNNIQWPTGITIDYPSQRLYWADPKARTIES 142 (713)
Q Consensus 71 ~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~d--G~~~------~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~ 142 (713)
.....+|++.|..+.++++-.... .|..-++. +... ...+.........|+++|....|+.+-...+.|..
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~Dg-tIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrI 152 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDL-TIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNI 152 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCC-eEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEE
Confidence 356788999987666666654333 55555553 2111 11222234456789999877777666556677877
Q ss_pred EeCCCCceeEEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCc
Q psy6570 143 INLNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSD 193 (713)
Q Consensus 143 ~~~~g~~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~ 193 (713)
.++........+.. ......+++. .+.++.+....+.|..++...+..
T Consensus 153 WDl~tg~~~~~i~~---~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 153 WDIENEKRAFQINM---PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI 201 (568)
T ss_pred EECCCCcEEEEEec---CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE
Confidence 77765432222211 1233455554 445555555556677777655443
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=88.04 E-value=26 Score=36.14 Aligned_cols=139 Identities=15% Similarity=0.116 Sum_probs=78.9
Q ss_pred CceeEEEccCcc--cEEecCCCCCce-EEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCC
Q psy6570 7 GNVTRVKREMNL--KTVLSNLHDPRG-VAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLS 83 (713)
Q Consensus 7 ~~I~~~~~~~~~--~~~~~~~~~p~g-la~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~ 83 (713)
++|+..++...+ .++...-.+|.| +|+.+....-|.+-.+.+..+.|.+++...-.....+..--...-.||+++ +
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~ 184 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-D 184 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-C
Confidence 345566655532 222233356664 456555565666665555778899999876544444443334566799996 6
Q ss_pred CcEEEEccCCCCeEEEEecCCCCcEEEEeCC--CCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC
Q psy6570 84 GRMFWTELGIKPRISGASIDGKNKFNLVDNN--IQWPTGITIDYPSQRLYWADPKARTIESINLNG 147 (713)
Q Consensus 84 ~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~--~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g 147 (713)
|.|.-|-+.....|+++......+..-+..+ ......|+|+++...|-. -+.+..|..|.++-
T Consensus 185 G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~-sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 185 GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA-SSNTETVHIFKLEK 249 (391)
T ss_pred CCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE-ecCCCeEEEEEecc
Confidence 7777776655534444444322222222222 223467899987775544 34566777666654
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=88.02 E-value=51 Score=37.05 Aligned_cols=32 Identities=9% Similarity=0.081 Sum_probs=21.4
Q ss_pred eEEEeCCCCeEEEEcCC---------------CCcEEEEeCCCCcee
Q psy6570 120 GITIDYPSQRLYWADPK---------------ARTIESINLNGKDRF 151 (713)
Q Consensus 120 glavd~~~~~LY~~d~~---------------~~~I~~~~~~g~~~~ 151 (713)
.+++|+..+.|||.-.+ +..|..+|++....+
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~ 284 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIK 284 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEE
Confidence 46999999999997522 235777776644443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=87.98 E-value=25 Score=39.52 Aligned_cols=17 Identities=6% Similarity=0.045 Sum_probs=14.0
Q ss_pred eeEEEeCCCCeEEEEcC
Q psy6570 119 TGITIDYPSQRLYWADP 135 (713)
Q Consensus 119 ~glavd~~~~~LY~~d~ 135 (713)
.++|+|+..+.||+...
T Consensus 390 ~~~A~Dp~~g~~yvp~~ 406 (527)
T TIGR03075 390 QPMAYSPKTGLFYVPAN 406 (527)
T ss_pred CCceECCCCCEEEEecc
Confidence 46899999999998754
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=87.96 E-value=9.6 Score=40.59 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=60.8
Q ss_pred CCeEEEEecCCceEEEEEcCCC--CCcceE--EEcCCCCcEEEEccCCCCeEEEEecC--CCCc-EEEEeC---------
Q psy6570 50 SNNIMVSTLEGRKKRTLLNTGL--NEPYDI--ALEPLSGRMFWTELGIKPRISGASID--GKNK-FNLVDN--------- 113 (713)
Q Consensus 50 ~~~I~~~~~~G~~~~~l~~~~~--~~p~~i--avD~~~~~ly~td~~~~~~I~~~~~d--G~~~-~~l~~~--------- 113 (713)
.++|.+.++.....+..+.-+- ..|..| +-||....=|+.-.-.. .|+++..+ |+-. +.++..
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss-~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSS-SIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--E-EEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccc-eEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 3567777777666554443221 123222 22444445566544333 67776553 3211 122210
Q ss_pred --CC--------CCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCc-eeEEEecCC------------------CCccce
Q psy6570 114 --NI--------QWPTGITIDYPSQRLYWADPKARTIESINLNGKD-RFVVYHTED------------------NGYKPY 164 (713)
Q Consensus 114 --~~--------~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~-~~~~~~~~~------------------~~~~p~ 164 (713)
.+ ..++.|.|+.+.++||++.+..+.|+.+|+.... .+.+.+... ..++-+
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv 379 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV 379 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence 11 3468888998899999999999999999987643 333322110 112335
Q ss_pred eeeeeCCeEEEEeC
Q psy6570 165 KLEVFEDNLYFSTY 178 (713)
Q Consensus 165 ~i~~~~~~ly~td~ 178 (713)
.++.++.+||||++
T Consensus 380 qlS~DGkRlYvTnS 393 (461)
T PF05694_consen 380 QLSLDGKRLYVTNS 393 (461)
T ss_dssp EE-TTSSEEEEE--
T ss_pred EEccCCeEEEEEee
Confidence 67788999999974
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=87.87 E-value=9.9 Score=39.67 Aligned_cols=179 Identities=16% Similarity=0.112 Sum_probs=99.3
Q ss_pred CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCC-CCCcceEEEcCCCCcEEEEccCC-CCeEEEEe
Q psy6570 24 NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG-LNEPYDIALEPLSGRMFWTELGI-KPRISGAS 101 (713)
Q Consensus 24 ~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~-~~~p~~iavD~~~~~ly~td~~~-~~~I~~~~ 101 (713)
.+.+...++|.|.++.|- |-..- ...+|+ |+..+ .+.+..++ .....+||+.+ +|-|..|.... -++||-..
T Consensus 260 H~~RVs~VafHPsG~~L~-TasfD-~tWRlW--D~~tk-~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlR 333 (459)
T KOG0272|consen 260 HLARVSRVAFHPSGKFLG-TASFD-STWRLW--DLETK-SELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLR 333 (459)
T ss_pred chhhheeeeecCCCceee-ecccc-cchhhc--ccccc-hhhHhhcccccccceeEecC-CCceeeccCccchhheeecc
Confidence 345566677777655543 33210 123333 33222 22333333 34566899985 67777775332 24566443
Q ss_pred cCCCCcEEE-EeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCce-eEEEecCCCCccceeeeeeCCeEEEEeCC
Q psy6570 102 IDGKNKFNL-VDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDR-FVVYHTEDNGYKPYKLEVFEDNLYFSTYR 179 (713)
Q Consensus 102 ~dG~~~~~l-~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~-~~~~~~~~~~~~p~~i~~~~~~ly~td~~ 179 (713)
+.+.++ +...+....+++++| +++..-+-...+.+..-++.+... .++..... +..-.-+....++..+|...
T Consensus 334 ---tgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n-lVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 334 ---TGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN-LVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred ---cCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceecccccc-hhhheEecccCCeEEEEccc
Confidence 223333 344677778999995 677776766555544444444322 12221111 11112222246788888888
Q ss_pred CCcEEEEcccCCCcceeeeccccccccEEEEeec
Q psy6570 180 TNNILKINKFGNSDFNVLANNLNRASDVLILQEN 213 (713)
Q Consensus 180 ~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~ 213 (713)
.+.+......+...+..++..-.++..+.+....
T Consensus 409 D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~ 442 (459)
T KOG0272|consen 409 DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDS 442 (459)
T ss_pred CcceeeecCCCcccchhhcCCccceEEEEeccCC
Confidence 8888888888888888888877777777665443
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=87.84 E-value=7.3 Score=39.77 Aligned_cols=132 Identities=16% Similarity=0.160 Sum_probs=78.8
Q ss_pred CCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCce
Q psy6570 71 LNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDR 150 (713)
Q Consensus 71 ~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~ 150 (713)
+.+.+.|+|||. +..|.|.+... .|...++.....+.-+...+..-.+++|+...-+||-+- ..+.|--.|+.-..
T Consensus 151 lgWVr~vavdP~-n~wf~tgs~Dr-tikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g-edk~VKCwDLe~nk- 226 (460)
T KOG0285|consen 151 LGWVRSVAVDPG-NEWFATGSADR-TIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG-EDKQVKCWDLEYNK- 226 (460)
T ss_pred cceEEEEeeCCC-ceeEEecCCCc-eeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec-CCCeeEEEechhhh-
Confidence 677889999986 55666665544 677777765555444444677789999998777887664 33455555554322
Q ss_pred eEEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccE
Q psy6570 151 FVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDV 207 (713)
Q Consensus 151 ~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i 207 (713)
++..-...+...+.|+++ -..+.++......++..+......+.++......+..+
T Consensus 227 -vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V 283 (460)
T KOG0285|consen 227 -VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASV 283 (460)
T ss_pred -hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeE
Confidence 222221124455666665 23455665555556666666666666665544443443
|
|
| >cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies | Back alignment and domain information |
|---|
Probab=87.63 E-value=0.6 Score=33.44 Aligned_cols=23 Identities=48% Similarity=1.380 Sum_probs=19.2
Q ss_pred eecCCCCccCCCCCCccccCCCCCCcccCCCCccCC
Q psy6570 471 KCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGK 506 (713)
Q Consensus 471 ~C~C~~G~~g~~C~~~~C~~~~~~~~C~C~~G~~g~ 506 (713)
+|.|.++|+|..|+. |.+||++.
T Consensus 20 ~C~C~~~~~G~~C~~-------------C~~g~~~~ 42 (50)
T cd00055 20 QCECKPNTTGRRCDR-------------CAPGYYGL 42 (50)
T ss_pred EEeCCCcCCCCCCCC-------------CCCCCccC
Confidence 899999999999885 77888764
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=87.44 E-value=32 Score=34.15 Aligned_cols=159 Identities=9% Similarity=0.044 Sum_probs=89.4
Q ss_pred CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEE-----EEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEe
Q psy6570 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRT-----LLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGAS 101 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~-----l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~ 101 (713)
...+|++-..+..+|++-+ ....|.+.+++....+. .+..-.....++++.+ ++..+++-.... .++.-+
T Consensus 17 ~Vt~la~~~~~~~~l~sas---rDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~-~lrlWD 91 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSAS---RDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDG-TLRLWD 91 (315)
T ss_pred eEEEEEeecCCCceEEEcc---cceEEEEEEeccCccccCceeeeeeccceEecceEEcc-CCceEEeccccc-eEEEEE
Confidence 3456777666667777776 56677776666443221 1112235677888875 566666654434 566667
Q ss_pred cCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecC-CCCccceeeeeeC-CeEEEEeCC
Q psy6570 102 IDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTE-DNGYKPYKLEVFE-DNLYFSTYR 179 (713)
Q Consensus 102 ~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~-~~~~~p~~i~~~~-~~ly~td~~ 179 (713)
+.+...+..+.....--.++||++++.+| ++-+..+.|...+.-|.-...+.... .....-.-+...+ +-++++...
T Consensus 92 l~~g~~t~~f~GH~~dVlsva~s~dn~qi-vSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~ 170 (315)
T KOG0279|consen 92 LATGESTRRFVGHTKDVLSVAFSTDNRQI-VSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASW 170 (315)
T ss_pred ecCCcEEEEEEecCCceEEEEecCCCcee-ecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccC
Confidence 77654444444455556789999655444 56666777777777776555554442 1121222222223 233444444
Q ss_pred CCcEEEEcccCC
Q psy6570 180 TNNILKINKFGN 191 (713)
Q Consensus 180 ~~~i~~~~~~~~ 191 (713)
.+.|...+..+-
T Consensus 171 DktvKvWnl~~~ 182 (315)
T KOG0279|consen 171 DKTVKVWNLRNC 182 (315)
T ss_pred CceEEEEccCCc
Confidence 555666665443
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=87.23 E-value=16 Score=38.99 Aligned_cols=144 Identities=10% Similarity=0.110 Sum_probs=77.2
Q ss_pred cCCeEEEeecCCCCCCeEEEEecCCceEEE---EEc--CCCCCcceEEEcCCCCcEEEEccCCCCeEEEEec-CCCCcEE
Q psy6570 36 VGKNLYWTDAGGRSSNNIMVSTLEGRKKRT---LLN--TGLNEPYDIALEPLSGRMFWTELGIKPRISGASI-DGKNKFN 109 (713)
Q Consensus 36 ~~~~ly~td~~~~~~~~I~~~~~~G~~~~~---l~~--~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~-dG~~~~~ 109 (713)
.++++|+... .+.|..+++++...+- +.. ..+..| +.+. +|+||+.++.. +++.+++ +|+.+-.
T Consensus 67 ~dg~v~~~~~----~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~--~~~~--~G~i~~g~~~g--~~y~ld~~~G~~~W~ 136 (370)
T COG1520 67 GDGTVYVGTR----DGNIFALNPDTGLVKWSYPLLGAVAQLSGP--ILGS--DGKIYVGSWDG--KLYALDASTGTLVWS 136 (370)
T ss_pred eCCeEEEecC----CCcEEEEeCCCCcEEecccCcCcceeccCc--eEEe--CCeEEEecccc--eEEEEECCCCcEEEE
Confidence 4688998743 5678888887654321 111 112222 3332 78899998764 5888888 6765544
Q ss_pred EEeCC-CCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCC-CCceeEEEecC-CCCccceeeeeeCCeEEEEeCC-CCcEEE
Q psy6570 110 LVDNN-IQWPTGITIDYPSQRLYWADPKARTIESINLN-GKDRFVVYHTE-DNGYKPYKLEVFEDNLYFSTYR-TNNILK 185 (713)
Q Consensus 110 l~~~~-~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~-g~~~~~~~~~~-~~~~~p~~i~~~~~~ly~td~~-~~~i~~ 185 (713)
.-... ........+. ++.+|+.. ..+.++.++.+ |..+=...... ..........+.++.+|+.... ...++.
T Consensus 137 ~~~~~~~~~~~~~v~~--~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a 213 (370)
T COG1520 137 RNVGGSPYYASPPVVG--DGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYA 213 (370)
T ss_pred EecCCCeEEecCcEEc--CcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEE
Confidence 43323 1122222332 56777664 45778888776 54332211111 1111222222667788887553 345777
Q ss_pred EcccCCC
Q psy6570 186 INKFGNS 192 (713)
Q Consensus 186 ~~~~~~~ 192 (713)
++...+.
T Consensus 214 ~~~~~G~ 220 (370)
T COG1520 214 LNAEDGT 220 (370)
T ss_pred EEccCCc
Confidence 7764443
|
|
| >PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional | Back alignment and domain information |
|---|
Probab=87.09 E-value=0.54 Score=40.00 Aligned_cols=32 Identities=31% Similarity=0.629 Sum_probs=23.9
Q ss_pred CCCCCCeeec-CCCCCCeeecCCCcccCCcccc
Q psy6570 314 LDCNHGTCEF-DDDFDPHCICQENFYGTYCEKV 345 (713)
Q Consensus 314 ~~C~~~~C~~-~~~~~~~C~C~~g~~G~~C~~~ 345 (713)
+-|.||.|.. .+-..+.|.|..||+|..|+..
T Consensus 51 ~YClHG~C~yI~dl~~~~CrC~~GYtGeRCEh~ 83 (139)
T PHA03099 51 GYCLHGDCIHARDIDGMYCRCSHGYTGIRCQHV 83 (139)
T ss_pred CEeECCEEEeeccCCCceeECCCCcccccccce
Confidence 3488888877 3344578999999999888754
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=86.91 E-value=6.6 Score=41.64 Aligned_cols=202 Identities=12% Similarity=0.022 Sum_probs=105.0
Q ss_pred CceeEEEccCccc-EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCc
Q psy6570 7 GNVTRVKREMNLK-TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGR 85 (713)
Q Consensus 7 ~~I~~~~~~~~~~-~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ 85 (713)
..|...|.++... .-.....-|.-+-+.+.+.++|++-. ...+|...|.....+..-....|.....|.+-+. +.
T Consensus 280 ~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~---sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~-g~ 355 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGG---SDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDE-GR 355 (503)
T ss_pred eeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEec---CCCcEEEEeccchHHHHHHHhhhhheeeeEEccC-Cc
Confidence 3344445554432 22566667888999988889998887 6788888887654322212234677778888754 44
Q ss_pred EEEEccCCC-CeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCce---eEEEecCCCCc
Q psy6570 86 MFWTELGIK-PRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDR---FVVYHTEDNGY 161 (713)
Q Consensus 86 ly~td~~~~-~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~---~~~~~~~~~~~ 161 (713)
=|++.+... -+||.....- ..+.++......--.|++.| ++..+.+....++|..+...-..+ +..+.....-.
T Consensus 356 rFissSDdks~riWe~~~~v-~ik~i~~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG 433 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENRIPV-PIKNIADPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG 433 (503)
T ss_pred eEeeeccCccEEEEEcCCCc-cchhhcchhhccCcceecCC-CCCeehhhccCceEEEEecccccccCHhhhhcceeccC
Confidence 455443322 2444433321 22222223333334577775 566677888788888877544322 22222211122
Q ss_pred cceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEEeeccc
Q psy6570 162 KPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQ 215 (713)
Q Consensus 162 ~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q 215 (713)
.+..+++. ++....+-...++++.++-.....+..+... ..+--.+.+|+...
T Consensus 434 ys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah-~~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 434 YSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH-DQPCIGVDWHPVEP 487 (503)
T ss_pred ceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC-CcceEEEEecCCCc
Confidence 33344433 3344444445666666654333333333332 23333344554443
|
|
| >KOG3607|consensus | Back alignment and domain information |
|---|
Probab=86.86 E-value=1.1 Score=51.29 Aligned_cols=32 Identities=25% Similarity=0.490 Sum_probs=23.5
Q ss_pred CCCCCCCeecCCCCccCCCCCceeeCCCCcccCCCCccccc
Q psy6570 634 HFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTLVHY 674 (713)
Q Consensus 634 ~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~~~~~ 674 (713)
..|..+|+|.+ ...|+|.+||.+..|+.....
T Consensus 630 ~~C~g~GVCnn---------~~~ChC~~gwapp~C~~~~~~ 661 (716)
T KOG3607|consen 630 TTCNGHGVCNN---------ELNCHCEPGWAPPFCFIFGYG 661 (716)
T ss_pred cccCCCcccCC---------CcceeeCCCCCCCccccccCC
Confidence 44777788866 267888888888888776544
|
|
| >PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation | Back alignment and domain information |
|---|
Probab=86.59 E-value=0.39 Score=34.23 Aligned_cols=23 Identities=57% Similarity=1.246 Sum_probs=16.1
Q ss_pred EEEcCCCeeeCCCCCccCCCCcC
Q psy6570 396 TCIATTQTCVCPPGFTGDTCQQC 418 (713)
Q Consensus 396 ~C~~~~~~C~C~~g~~g~~C~~C 418 (713)
.|...+++|.|.++|+|..|++|
T Consensus 12 ~C~~~~G~C~C~~~~~G~~C~~C 34 (49)
T PF00053_consen 12 TCDPSTGQCVCKPGTTGPRCDQC 34 (49)
T ss_dssp SEEETCEEESBSTTEESTTS-EE
T ss_pred cccCCCCEEeccccccCCcCcCC
Confidence 56666778888888888887643
|
They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A. |
| >cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies | Back alignment and domain information |
|---|
Probab=86.14 E-value=0.85 Score=32.65 Aligned_cols=22 Identities=41% Similarity=1.040 Sum_probs=16.0
Q ss_pred EEcCCCeeeCCCCCccCCCCcC
Q psy6570 397 CIATTQTCVCPPGFTGDTCQQC 418 (713)
Q Consensus 397 C~~~~~~C~C~~g~~g~~C~~C 418 (713)
|...+++|.|.++|+|..|+.|
T Consensus 14 C~~~~G~C~C~~~~~G~~C~~C 35 (50)
T cd00055 14 CDPGTGQCECKPNTTGRRCDRC 35 (50)
T ss_pred ccCCCCEEeCCCcCCCCCCCCC
Confidence 5445678888888888887644
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=86.05 E-value=18 Score=41.73 Aligned_cols=152 Identities=10% Similarity=0.008 Sum_probs=81.3
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCC--ceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCC
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEG--RKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGK 105 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G--~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~ 105 (713)
-..|.+|+.+..|+..+. .+.|.+.+-.. ...+++... .....+|+.+. ..|.+.+.++ .|.|...+..
T Consensus 16 ~t~i~~d~~gefi~tcgs----dg~ir~~~~~sd~e~P~ti~~~-g~~v~~ia~~s---~~f~~~s~~~-tv~~y~fps~ 86 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGS----DGDIRKWKTNSDEEEPETIDIS-GELVSSIACYS---NHFLTGSEQN-TVLRYKFPSG 86 (933)
T ss_pred eEEEEEcCCCCEEEEecC----CCceEEeecCCcccCCchhhcc-CceeEEEeecc---cceEEeeccc-eEEEeeCCCC
Confidence 456889988888887775 34444443221 222222211 13455677652 2555555556 7899988876
Q ss_pred CcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeee-CCeEEEEeCCCCcEE
Q psy6570 106 NKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNIL 184 (713)
Q Consensus 106 ~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~ 184 (713)
....++..-....+.++|+..+.+|- +-...-.|-.++++.......+.... ..-..|+++ ++.+..+....+.|+
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~ia-agsdD~~vK~~~~~D~s~~~~lrgh~--apVl~l~~~p~~~fLAvss~dG~v~ 163 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIA-AGSDDTAVKLLNLDDSSQEKVLRGHD--APVLQLSYDPKGNFLAVSSCDGKVQ 163 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEE-eecCceeEEEEeccccchheeecccC--CceeeeeEcCCCCEEEEEecCceEE
Confidence 66655532222346788885444443 33334456666665444444433311 123566666 334444444566666
Q ss_pred EEcccCC
Q psy6570 185 KINKFGN 191 (713)
Q Consensus 185 ~~~~~~~ 191 (713)
.++...+
T Consensus 164 iw~~~~~ 170 (933)
T KOG1274|consen 164 IWDLQDG 170 (933)
T ss_pred EEEcccc
Confidence 6665433
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=85.70 E-value=43 Score=33.91 Aligned_cols=139 Identities=15% Similarity=0.109 Sum_probs=80.6
Q ss_pred CCceeEEEccCcccEE--ecCCCCCceE-EEeccCCeEEEeecCCCCCCeEEEEecCCceE--EEEEcCCCCCcceEEEc
Q psy6570 6 SGNVTRVKREMNLKTV--LSNLHDPRGV-AVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKK--RTLLNTGLNEPYDIALE 80 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~--~~~~~~p~gl-a~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~--~~l~~~~~~~p~~iavD 80 (713)
.++|+.+....+.+.+ +....+|.|| ++++..+.-+.+=.+. ..+.|++.+|.-... ..++..-.....-|++.
T Consensus 112 ~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~-k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln 190 (346)
T KOG2111|consen 112 ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF-KTGQVQIVDLASTKPNAPSIINAHDSDIACVALN 190 (346)
T ss_pred cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC-ccceEEEEEhhhcCcCCceEEEcccCceeEEEEc
Confidence 3444544444333222 4455668886 4556666666665543 358899999876555 24444444667778887
Q ss_pred CCCCcEEEEccCCCCeEEEE-e-cCCCCcEEEEe-CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCC
Q psy6570 81 PLSGRMFWTELGIKPRISGA-S-IDGKNKFNLVD-NNIQWPTGITIDYPSQRLYWADPKARTIESINLNGK 148 (713)
Q Consensus 81 ~~~~~ly~td~~~~~~I~~~-~-~dG~~~~~l~~-~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~ 148 (713)
..|.+.-|.+... .+.|+ + .+|+....+-. .+-....-||+++...+|-++. ..+.|..+.+...
T Consensus 191 -~~Gt~vATaStkG-TLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS-dKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 191 -LQGTLVATASTKG-TLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS-DKGTLHIFSLRDT 258 (346)
T ss_pred -CCccEEEEeccCc-EEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc-CCCeEEEEEeecC
Confidence 5677766665444 55554 3 34554444432 1223446789998777776553 5666766666553
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=85.67 E-value=67 Score=37.28 Aligned_cols=146 Identities=12% Similarity=0.145 Sum_probs=81.4
Q ss_pred ceeEEEccCcccEE--ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCc
Q psy6570 8 NVTRVKREMNLKTV--LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGR 85 (713)
Q Consensus 8 ~I~~~~~~~~~~~~--~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ 85 (713)
++.|++.....++- -...++..++-+++.. .|.++.+ ....|.+.+|+-+.....++..-.+-+-||+.| +.+
T Consensus 231 KlWrmnetKaWEvDtcrgH~nnVssvlfhp~q-~lIlSns---EDksirVwDm~kRt~v~tfrrendRFW~laahP-~lN 305 (1202)
T KOG0292|consen 231 KLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ-DLILSNS---EDKSIRVWDMTKRTSVQTFRRENDRFWILAAHP-ELN 305 (1202)
T ss_pred eEEEeccccceeehhhhcccCCcceEEecCcc-ceeEecC---CCccEEEEecccccceeeeeccCCeEEEEEecC-Ccc
Confidence 34444444333322 3456678889999764 5556777 678999999987664444444446677788876 566
Q ss_pred EEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCC---CCcc
Q psy6570 86 MFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTED---NGYK 162 (713)
Q Consensus 86 ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~---~~~~ 162 (713)
||-+.... .+.++.++-.. -..+|. .+.||+.. ..+|+.+++....-..+.+... ....
T Consensus 306 LfAAgHDs--Gm~VFkleREr------------pa~~v~--~n~LfYvk--d~~i~~~d~~t~~d~~v~~lr~~g~~~~~ 367 (1202)
T KOG0292|consen 306 LFAAGHDS--GMIVFKLERER------------PAYAVN--GNGLFYVK--DRFIRSYDLRTQKDTAVASLRRPGTLWQP 367 (1202)
T ss_pred eeeeecCC--ceEEEEEcccC------------ceEEEc--CCEEEEEc--cceEEeeeccccccceeEeccCCCcccCC
Confidence 77664332 35555544322 234454 44455544 4677777776543333322211 1233
Q ss_pred ceeeee--eCCeEEEE
Q psy6570 163 PYKLEV--FEDNLYFS 176 (713)
Q Consensus 163 p~~i~~--~~~~ly~t 176 (713)
|..|.+ .++.+.+.
T Consensus 368 ~~smsYNpae~~vlic 383 (1202)
T KOG0292|consen 368 PRSLSYNPAENAVLIC 383 (1202)
T ss_pred cceeeeccccCeEEEE
Confidence 344444 46666665
|
|
| >PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane | Back alignment and domain information |
|---|
Probab=85.59 E-value=0.28 Score=42.35 Aligned_cols=29 Identities=14% Similarity=0.068 Sum_probs=14.6
Q ss_pred ccchhHHHHHHHHHHHHHHhheeeEEEEe
Q psy6570 682 VNSHISSILILILLLITVGGIGYYIFRIK 710 (713)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (713)
+.++++++++++|++|++++++++|+|+|
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44556666666666555554444444443
|
Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.19 E-value=73 Score=36.10 Aligned_cols=161 Identities=10% Similarity=0.059 Sum_probs=85.4
Q ss_pred ceeEEEccCcccEEecCCCCCc---eEEEeccCCeEEEeecCC---CCCCeEEEEecCCceEEEEEcCCCCCcc---eEE
Q psy6570 8 NVTRVKREMNLKTVLSNLHDPR---GVAVDWVGKNLYWTDAGG---RSSNNIMVSTLEGRKKRTLLNTGLNEPY---DIA 78 (713)
Q Consensus 8 ~I~~~~~~~~~~~~~~~~~~p~---gla~D~~~~~ly~td~~~---~~~~~I~~~~~~G~~~~~l~~~~~~~p~---~ia 78 (713)
.+..+++....-..+..+..|+ ++++ .++.||+.-... .....++++++....-..+ ..+..|+ +++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~--l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~--~~m~~~R~~~~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI--VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVEL--PPMIKNRCRFSLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE--ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeC--CCCcchhhceeEE
Confidence 3556666655433344455443 4444 578999974311 1135688888766532222 3344444 333
Q ss_pred EcCCCCcEEEEccCC----CCeEEEEecCCCCcEEEEeCCCCCCe-eEEEeCCCCeEEEEcCC-----------------
Q psy6570 79 LEPLSGRMFWTELGI----KPRISGASIDGKNKFNLVDNNIQWPT-GITIDYPSQRLYWADPK----------------- 136 (713)
Q Consensus 79 vD~~~~~ly~td~~~----~~~I~~~~~dG~~~~~l~~~~~~~p~-glavd~~~~~LY~~d~~----------------- 136 (713)
+ .++.||+..... ...+++.++....=..+. .+..|. +.++-..+++||+.-..
T Consensus 349 ~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~--~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~ 424 (557)
T PHA02713 349 V--IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP--DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDM 424 (557)
T ss_pred E--ECCEEEEECCcCCCCCCceEEEEECCCCeEEECC--CCCcccccccEEEECCEEEEEeCCCcccccccccccccccc
Confidence 3 578999975332 125777776643222221 222221 11111236899997422
Q ss_pred ------CCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEe
Q psy6570 137 ------ARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFST 177 (713)
Q Consensus 137 ------~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td 177 (713)
...|+++++....-+.+..... .....++++.+++||+.-
T Consensus 425 ~~~~~~~~~ve~YDP~td~W~~v~~m~~-~r~~~~~~~~~~~IYv~G 470 (557)
T PHA02713 425 EEDTHSSNKVIRYDTVNNIWETLPNFWT-GTIRPGVVSHKDDIYVVC 470 (557)
T ss_pred cccccccceEEEECCCCCeEeecCCCCc-ccccCcEEEECCEEEEEe
Confidence 2457778776654444433222 223456788899999984
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=85.14 E-value=55 Score=34.64 Aligned_cols=177 Identities=8% Similarity=0.011 Sum_probs=80.8
Q ss_pred CCceeEEEccCcc-c-EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCc-eEEEEEcCCCCCcceEEEcCC
Q psy6570 6 SGNVTRVKREMNL-K-TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR-KKRTLLNTGLNEPYDIALEPL 82 (713)
Q Consensus 6 ~~~I~~~~~~~~~-~-~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~-~~~~l~~~~~~~p~~iavD~~ 82 (713)
..+|...+++... . ++...-.....|++.+....+.++-+ ..+++...+..-. ....-+ .-.....-+++|+.
T Consensus 265 D~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs---~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~ 340 (463)
T KOG0270|consen 265 DKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGS---YDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPH 340 (463)
T ss_pred CceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEecc---ccceEEeeeccCccccCceE-EeccceEEEEecCC
Confidence 3445555555432 2 22334556677777777666666555 4555555544310 000000 00123334444444
Q ss_pred CCcEEEEccCCCCeEEEEecC--CCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCC--
Q psy6570 83 SGRMFWTELGIKPRISGASID--GKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTED-- 158 (713)
Q Consensus 83 ~~~ly~td~~~~~~I~~~~~d--G~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~-- 158 (713)
.-..|+...... .++-+++. |+...++.. .-....||.+......+..+......|..-++++...+.+.....
T Consensus 341 se~~f~~~tddG-~v~~~D~R~~~~~vwt~~A-Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~ 418 (463)
T KOG0270|consen 341 SENSFFVSTDDG-TVYYFDIRNPGKPVWTLKA-HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKL 418 (463)
T ss_pred CceeEEEecCCc-eEEeeecCCCCCceeEEEe-ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccc
Confidence 333333332222 33333332 222222221 222457788887777777776666655555565555444433222
Q ss_pred CCccceeeeeeCCeEEEEeCCCCcEEEEcc
Q psy6570 159 NGYKPYKLEVFEDNLYFSTYRTNNILKINK 188 (713)
Q Consensus 159 ~~~~p~~i~~~~~~ly~td~~~~~i~~~~~ 188 (713)
...+-++...+...+|.....++.+..++.
T Consensus 419 ~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 419 GRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred cceeecccCCCcceEEEecCccceEEEeec
Confidence 122334444445555555444443444443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=84.97 E-value=49 Score=33.85 Aligned_cols=159 Identities=11% Similarity=-0.026 Sum_probs=88.1
Q ss_pred EeccCCeEEEeecCC-CCCCeEEEEecCCceEEE-EEcCCCCCcceEEEcCCCCcEEEEccCCC----------------
Q psy6570 33 VDWVGKNLYWTDAGG-RSSNNIMVSTLEGRKKRT-LLNTGLNEPYDIALEPLSGRMFWTELGIK---------------- 94 (713)
Q Consensus 33 ~D~~~~~ly~td~~~-~~~~~I~~~~~~G~~~~~-l~~~~~~~p~~iavD~~~~~ly~td~~~~---------------- 94 (713)
|.+.++.||.|+..- ...+.|-+.+.....+++ -+...-..|..|.+.|....|.+++-+-.
T Consensus 58 fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~ 137 (305)
T PF07433_consen 58 FSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQ 137 (305)
T ss_pred EcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcC
Confidence 667788899887531 246789999998444432 33344467999999987778999864411
Q ss_pred CeEEEE-ecCCCCcEEEEe---CCCCCCeeEEEeCCCCeEEEEcCCCC-------cEEEEeCCCCceeEEEecCC----C
Q psy6570 95 PRISGA-SIDGKNKFNLVD---NNIQWPTGITIDYPSQRLYWADPKAR-------TIESINLNGKDRFVVYHTED----N 159 (713)
Q Consensus 95 ~~I~~~-~~dG~~~~~l~~---~~~~~p~glavd~~~~~LY~~d~~~~-------~I~~~~~~g~~~~~~~~~~~----~ 159 (713)
+.|..+ ..+|........ .......-|+++. .+.+.++....+ -|...+.+ ...+.+..... .
T Consensus 138 psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g-~~~~~~~~p~~~~~~l 215 (305)
T PF07433_consen 138 PSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRG-GALRLLPAPEEQWRRL 215 (305)
T ss_pred CceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCC-CcceeccCChHHHHhh
Confidence 223333 333443333211 1222456788884 466766643222 12222222 22322221111 1
Q ss_pred Cccceeeeee--CCeEEEEeCCCCcEEEEcccCCCc
Q psy6570 160 GYKPYKLEVF--EDNLYFSTYRTNNILKINKFGNSD 193 (713)
Q Consensus 160 ~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~ 193 (713)
..+.-+|++. ++.+.+|....+.+..++...+.-
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL 251 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence 1233456664 446888888888888887655543
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=84.71 E-value=56 Score=34.33 Aligned_cols=112 Identities=15% Similarity=0.043 Sum_probs=65.0
Q ss_pred ceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCC-CCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCc
Q psy6570 29 RGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG-LNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNK 107 (713)
Q Consensus 29 ~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~-~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~ 107 (713)
.-|++.|..+.|. +-. ....+..-+.+....+.+...+ ...+...+.-| ++.=|++.+-.. .|..-++||...
T Consensus 273 ~yi~wSPDdryLl-aCg---~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr-~i~~wdlDgn~~ 346 (519)
T KOG0293|consen 273 SYIMWSPDDRYLL-ACG---FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDR-TIIMWDLDGNIL 346 (519)
T ss_pred EEEEECCCCCeEE-ecC---chHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCC-cEEEecCCcchh
Confidence 4466666555443 333 2334555565555544444333 23455666665 455567765444 788899998764
Q ss_pred EEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC
Q psy6570 108 FNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNG 147 (713)
Q Consensus 108 ~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g 147 (713)
..--.........||+.+++++||.... ..+|..++...
T Consensus 347 ~~W~gvr~~~v~dlait~Dgk~vl~v~~-d~~i~l~~~e~ 385 (519)
T KOG0293|consen 347 GNWEGVRDPKVHDLAITYDGKYVLLVTV-DKKIRLYNREA 385 (519)
T ss_pred hcccccccceeEEEEEcCCCcEEEEEec-ccceeeechhh
Confidence 4332333445678999888888887763 34566555544
|
|
| >PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein | Back alignment and domain information |
|---|
Probab=84.49 E-value=0.7 Score=30.31 Aligned_cols=29 Identities=28% Similarity=0.580 Sum_probs=21.1
Q ss_pred CCCCCCCCCCeeeccC-CCceeeeCCCCcc
Q psy6570 223 CDDKPCHQSALCINLP-SSHTCLCPDHLTE 251 (713)
Q Consensus 223 C~~~~C~~~~~C~~~~-g~~~C~C~~G~~~ 251 (713)
|...+|..++.|++.. |+++|.|..||..
T Consensus 2 C~~~~cP~NA~C~~~~dG~eecrCllgyk~ 31 (37)
T PF12946_consen 2 CIDTKCPANAGCFRYDDGSEECRCLLGYKK 31 (37)
T ss_dssp -SSS---TTEEEEEETTSEEEEEE-TTEEE
T ss_pred ccCccCCCCcccEEcCCCCEEEEeeCCccc
Confidence 5667888899999988 8899999999974
|
MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=84.46 E-value=67 Score=35.63 Aligned_cols=161 Identities=11% Similarity=0.029 Sum_probs=81.8
Q ss_pred ceeEEEccCcccEEecCCCCCce-EEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcc-eEEEcCCCCc
Q psy6570 8 NVTRVKREMNLKTVLSNLHDPRG-VAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPY-DIALEPLSGR 85 (713)
Q Consensus 8 ~I~~~~~~~~~~~~~~~~~~p~g-la~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~-~iavD~~~~~ 85 (713)
.+.++++..+.-..+..+..|+. .+.-..+++||+.-... ....+.++++....=.. ..++..|+ +.++-..+++
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~-~~~sve~ydp~~n~W~~--~~~l~~~r~~~~~~~~~g~ 364 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLP-NPTSVERWFHGDAAWVN--MPSLLKPRCNPAVASINNV 364 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcC-CCCceEEEECCCCeEEE--CCCCCCCCcccEEEEECCE
Confidence 34556655544333445555542 11222568999875421 23457777764322111 13444444 2222225799
Q ss_pred EEEEccCC--CCeEEEEecCCCCcEEEEeCCCCCCe-eEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 86 MFWTELGI--KPRISGASIDGKNKFNLVDNNIQWPT-GITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 86 ly~td~~~--~~~I~~~~~dG~~~~~l~~~~~~~p~-glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
||+..... ...+++.++... .-..+. .+..|. +.+.-..+++||+.- +.+.+++++...-+.+..... ...
T Consensus 365 IYviGG~~~~~~~ve~ydp~~~-~W~~~~-~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~-~r~ 438 (480)
T PHA02790 365 IYVIGGHSETDTTTEYLLPNHD-QWQFGP-STYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIY-PRD 438 (480)
T ss_pred EEEecCcCCCCccEEEEeCCCC-EEEeCC-CCCCccccceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCC-Ccc
Confidence 99985321 124666666533 222221 222221 111112368999986 346777776544444433221 234
Q ss_pred ceeeeeeCCeEEEEe
Q psy6570 163 PYKLEVFEDNLYFST 177 (713)
Q Consensus 163 p~~i~~~~~~ly~td 177 (713)
-.++++.+++||+.-
T Consensus 439 ~~~~~v~~~~IYviG 453 (480)
T PHA02790 439 NPELIIVDNKLLLIG 453 (480)
T ss_pred ccEEEEECCEEEEEC
Confidence 467888899999984
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=84.29 E-value=74 Score=35.39 Aligned_cols=30 Identities=3% Similarity=0.024 Sum_probs=20.1
Q ss_pred eeeeCCeEEEEeCCCCcEEEEcccCCCccee
Q psy6570 166 LEVFEDNLYFSTYRTNNILKINKFGNSDFNV 196 (713)
Q Consensus 166 i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~ 196 (713)
+.+.++.||+.+ ..+.|+.+++.++..+-.
T Consensus 402 ~~~~g~~v~~g~-~dG~l~ald~~tG~~lW~ 431 (488)
T cd00216 402 LATAGNLVFAGA-ADGYFRAFDATTGKELWK 431 (488)
T ss_pred eEecCCeEEEEC-CCCeEEEEECCCCceeeE
Confidence 455677788876 456788888776655443
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=84.21 E-value=55 Score=33.82 Aligned_cols=165 Identities=8% Similarity=0.013 Sum_probs=87.0
Q ss_pred CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecC
Q psy6570 24 NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASID 103 (713)
Q Consensus 24 ~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~d 103 (713)
.-.....++++| +.+|..|-. ..++-++.+.........+..--.....+.+.. .+.|..|. +..+.|.+...+
T Consensus 63 H~~svFavsl~P-~~~l~aTGG---gDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATG-dmsG~v~v~~~s 136 (399)
T KOG0296|consen 63 HTDSVFAVSLHP-NNNLVATGG---GDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATG-DMSGKVLVFKVS 136 (399)
T ss_pred cCCceEEEEeCC-CCceEEecC---CCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEec-CCCccEEEEEcc
Confidence 344467788888 667766655 445545544433332222222224556666653 34444443 233366666665
Q ss_pred CCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCcccee-eeeeCCeEEEEeCCCCc
Q psy6570 104 GKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYK-LEVFEDNLYFSTYRTNN 182 (713)
Q Consensus 104 G~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~-i~~~~~~ly~td~~~~~ 182 (713)
.+..+-.+.....--.-|...| ...++.+-...+.||+..+.......+..... .+--.| +..+ ++...+-+..+.
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~-~~ct~G~f~pd-GKr~~tgy~dgt 213 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHN-SPCTCGEFIPD-GKRILTGYDDGT 213 (399)
T ss_pred cCceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCC-CCcccccccCC-CceEEEEecCce
Confidence 4443333322333334477776 66777788888999999987644444433311 111122 2223 444444456778
Q ss_pred EEEEcccCCCcceee
Q psy6570 183 ILKINKFGNSDFNVL 197 (713)
Q Consensus 183 i~~~~~~~~~~~~~~ 197 (713)
|...++..+.+...+
T Consensus 214 i~~Wn~ktg~p~~~~ 228 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKI 228 (399)
T ss_pred EEEEecCCCceeEEe
Confidence 888887766554443
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=84.20 E-value=54 Score=34.86 Aligned_cols=130 Identities=14% Similarity=0.149 Sum_probs=68.1
Q ss_pred cCCceeEEEccCcccE----Ee---cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEec-CCceEEEEEcCC-CCCcc
Q psy6570 5 SSGNVTRVKREMNLKT----VL---SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTL-EGRKKRTLLNTG-LNEPY 75 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~~----~~---~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~-~G~~~~~l~~~~-~~~p~ 75 (713)
.+++|+.+++++..++ +. ..+..|...+ .++||+.+. .++++.++. +|+.+-..-... .....
T Consensus 76 ~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~----~G~i~~g~~----~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 76 RDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS----DGKIYVGSW----DGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred CCCcEEEEeCCCCcEEecccCcCcceeccCceEEe----CCeEEEecc----cceEEEEECCCCcEEEEEecCCCeEEec
Confidence 4567778887764322 11 2233333332 688999987 448888888 676543322222 01122
Q ss_pred eEEEcCCCCcEEEEccCCCCeEEEEecC-CCCcEEEEe---CCCCCCeeEEEeCCCCeEEEEcCC-CCcEEEEeC-CCC
Q psy6570 76 DIALEPLSGRMFWTELGIKPRISGASID-GKNKFNLVD---NNIQWPTGITIDYPSQRLYWADPK-ARTIESINL-NGK 148 (713)
Q Consensus 76 ~iavD~~~~~ly~td~~~~~~I~~~~~d-G~~~~~l~~---~~~~~p~glavd~~~~~LY~~d~~-~~~I~~~~~-~g~ 148 (713)
..++ .++.+|+.. ... +++.++.+ |+.+-..-. ..+......++ ..+.+|+.... ...++.+++ +|.
T Consensus 148 ~~v~--~~~~v~~~s-~~g-~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~--~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 148 PPVV--GDGTVYVGT-DDG-HLYALNADTGTLKWTYETPAPLSLSIYGSPAI--ASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred CcEE--cCcEEEEec-CCC-eEEEEEccCCcEEEEEecCCccccccccCcee--ecceEEEecCCCcceEEEEEccCCc
Confidence 2233 356777763 112 67777776 555433221 12222222232 36778887653 446777777 554
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=83.82 E-value=30 Score=36.26 Aligned_cols=165 Identities=13% Similarity=0.113 Sum_probs=91.4
Q ss_pred CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCC
Q psy6570 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGK 105 (713)
Q Consensus 26 ~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~ 105 (713)
..+...++-+.+-+ +++-+ ....|...++||....---........+||+-+.+..|+..... .+|..++....
T Consensus 313 ~S~~sc~W~pDg~~-~V~Gs---~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d--~~i~l~~~e~~ 386 (519)
T KOG0293|consen 313 FSVSSCAWCPDGFR-FVTGS---PDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVD--KKIRLYNREAR 386 (519)
T ss_pred CCcceeEEccCCce-eEecC---CCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecc--cceeeechhhh
Confidence 44566666665444 45655 56789999999976432111123456789998877777777643 25777766655
Q ss_pred CcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeee-ee---CCeEEEEeCCCC
Q psy6570 106 NKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLE-VF---EDNLYFSTYRTN 181 (713)
Q Consensus 106 ~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~-~~---~~~ly~td~~~~ 181 (713)
..+.++.. -...+.+.|+ .++++.......+.|..-++.- ...+......-..-+-|- -| ++.+..+-...+
T Consensus 387 ~dr~lise-~~~its~~iS-~d~k~~LvnL~~qei~LWDl~e--~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~ 462 (519)
T KOG0293|consen 387 VDRGLISE-EQPITSFSIS-KDGKLALVNLQDQEIHLWDLEE--NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDS 462 (519)
T ss_pred hhhccccc-cCceeEEEEc-CCCcEEEEEcccCeeEEeecch--hhHHHHhhcccccceEEEeccCCCCcceEEecCCCc
Confidence 55444432 2334678888 4567777776677777777651 111111100000001111 11 223444445566
Q ss_pred cEEEEcccCCCcceeeecc
Q psy6570 182 NILKINKFGNSDFNVLANN 200 (713)
Q Consensus 182 ~i~~~~~~~~~~~~~~~~~ 200 (713)
.|+..++..+..+.++...
T Consensus 463 kvyIWhr~sgkll~~LsGH 481 (519)
T KOG0293|consen 463 KVYIWHRISGKLLAVLSGH 481 (519)
T ss_pred eEEEEEccCCceeEeecCC
Confidence 6777776666666666544
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=83.79 E-value=35 Score=34.60 Aligned_cols=119 Identities=14% Similarity=0.086 Sum_probs=73.8
Q ss_pred cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEec--CCceEE---EEEcCC---CCCcceEEEcCCCCcEEEEccCCC
Q psy6570 23 SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTL--EGRKKR---TLLNTG---LNEPYDIALEPLSGRMFWTELGIK 94 (713)
Q Consensus 23 ~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~--~G~~~~---~l~~~~---~~~p~~iavD~~~~~ly~td~~~~ 94 (713)
..+.....|+|.+.+..||-... ..|.+++. -|..-. ++.... ..-..-+|+.|.+-.++-.....+
T Consensus 156 de~taAhsL~Fs~DGeqlfaGyk-----rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q 230 (406)
T KOG2919|consen 156 DEYTAAHSLQFSPDGEQLFAGYK-----RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ 230 (406)
T ss_pred HhhhhheeEEecCCCCeEeeccc-----ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccc
Confidence 34556788999999888985543 55666665 344422 222211 122445788887775554433333
Q ss_pred CeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC
Q psy6570 95 PRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNG 147 (713)
Q Consensus 95 ~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g 147 (713)
++-...-++.....++...-...+-|.+-+++++||........|..-|+.-
T Consensus 231 -~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 231 -RVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred -eeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 4555555666555555444555677888888999998887778887766544
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=83.25 E-value=52 Score=32.88 Aligned_cols=172 Identities=13% Similarity=0.104 Sum_probs=86.8
Q ss_pred ceeEEEccCcccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEc-CCCC-CcceEEEcCCCCc
Q psy6570 8 NVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLN-TGLN-EPYDIALEPLSGR 85 (713)
Q Consensus 8 ~I~~~~~~~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~-~~~~-~p~~iavD~~~~~ 85 (713)
.|+....++....+.. ........+|+. +.++..+.+. ...++.+...+|+...+.+. ..+. ....|.|.|...+
T Consensus 49 ~L~~~~~~~~~~~~~~-g~~l~~PS~d~~-g~~W~v~~~~-~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~R 125 (253)
T PF10647_consen 49 SLYVGPAGGPVRPVLT-GGSLTRPSWDPD-GWVWTVDDGS-GGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTR 125 (253)
T ss_pred EEEEEcCCCcceeecc-CCccccccccCC-CCEEEEEcCC-CceEEEEecCCCcceeEEecccccCCceEEEEECCCCcE
Confidence 3444444443333322 224444578876 6776666521 12223332345555443333 2233 6788999987766
Q ss_pred EE-EEccCCCCeEEEEe--cCCCC-cEEEE------eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEE-EeCCCCceeEEE
Q psy6570 86 MF-WTELGIKPRISGAS--IDGKN-KFNLV------DNNIQWPTGITIDYPSQRLYWADPKARTIES-INLNGKDRFVVY 154 (713)
Q Consensus 86 ly-~td~~~~~~I~~~~--~dG~~-~~~l~------~~~~~~p~glavd~~~~~LY~~d~~~~~I~~-~~~~g~~~~~~~ 154 (713)
|- +...+...+|++.. .++.. ...+. ...+.....+++-.....++.+......++. +.++|...+.+.
T Consensus 126 vA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~~~~l~ 205 (253)
T PF10647_consen 126 VAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGPSTPLP 205 (253)
T ss_pred EEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCCcccccC
Confidence 54 44333334677653 23333 22222 1223456788888655555555555555666 888988776652
Q ss_pred ecCCCCccceeeeeeCCeEEEEeCCCCcEEE
Q psy6570 155 HTEDNGYKPYKLEVFEDNLYFSTYRTNNILK 185 (713)
Q Consensus 155 ~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~ 185 (713)
.... ...-.++.-....+|.++. +.+++
T Consensus 206 ~~~~-~~~v~a~~~~~~~~~~t~~--~~~~~ 233 (253)
T PF10647_consen 206 SVNL-GVPVVAVAASPSTVYVTDD--GGVLQ 233 (253)
T ss_pred CCCC-CcceEEeeCCCcEEEEECC--CcEEE
Confidence 2211 1122333334556777753 44554
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=82.55 E-value=65 Score=34.34 Aligned_cols=75 Identities=11% Similarity=0.081 Sum_probs=41.1
Q ss_pred CCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCc-----------------eeEEEecCC-CCccceeeeeeCCeEEEEeC
Q psy6570 117 WPTGITIDYPSQRLYWADPKARTIESINLNGKD-----------------RFVVYHTED-NGYKPYKLEVFEDNLYFSTY 178 (713)
Q Consensus 117 ~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~-----------------~~~~~~~~~-~~~~p~~i~~~~~~ly~td~ 178 (713)
.++.+++||.+.++|+.. ..+.|+..++.+.. +..+..... ....-++|.. ++.|.++-.
T Consensus 219 si~av~lDpae~~~yiGt-~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd 296 (476)
T KOG0646|consen 219 SIKAVALDPAERVVYIGT-EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGD 296 (476)
T ss_pred cceeEEEcccccEEEecC-CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeC
Confidence 568999999888888754 45667766654422 111111100 0111223333 445666666
Q ss_pred CCCcEEEEcccCCCc
Q psy6570 179 RTNNILKINKFGNSD 193 (713)
Q Consensus 179 ~~~~i~~~~~~~~~~ 193 (713)
..+.|...+.....-
T Consensus 297 ~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 297 EDGKVCVWDIYSKQC 311 (476)
T ss_pred CCCCEEEEecchHHH
Confidence 677777777654433
|
|
| >PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world | Back alignment and domain information |
|---|
Probab=82.47 E-value=0.32 Score=49.30 Aligned_cols=21 Identities=38% Similarity=0.309 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhheeeEEEEec
Q psy6570 691 ILILLLITVGGIGYYIFRIKM 711 (713)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~ 711 (713)
++++|||+|++.|+||+|||.
T Consensus 265 IliIVLIMvIIYLILRYRRKK 285 (299)
T PF02009_consen 265 ILIIVLIMVIIYLILRYRRKK 285 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333333555556666666644
|
Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens []. |
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=82.18 E-value=77 Score=34.02 Aligned_cols=113 Identities=10% Similarity=0.012 Sum_probs=69.3
Q ss_pred ceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcE
Q psy6570 29 RGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKF 108 (713)
Q Consensus 29 ~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~ 108 (713)
+-+-|.+..+.++.+-. ....+...++++..+..-+...-...+.+++.|.++.|++|....+ .|..-+..... .
T Consensus 114 ~~~~f~~~d~t~l~s~s---Dd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg-~vrl~DtR~~~-~ 188 (487)
T KOG0310|consen 114 HVTKFSPQDNTMLVSGS---DDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDG-KVRLWDTRSLT-S 188 (487)
T ss_pred eEEEecccCCeEEEecC---CCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCc-eEEEEEeccCC-c
Confidence 55667778888888776 6677788888888764333333567888999999999999987655 66655554432 2
Q ss_pred EEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC
Q psy6570 109 NLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNG 147 (713)
Q Consensus 109 ~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g 147 (713)
.++.-+-..|..-.+-...+.++.+-. .+.|...|+.+
T Consensus 189 ~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~ 226 (487)
T KOG0310|consen 189 RVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTT 226 (487)
T ss_pred eeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecC
Confidence 222223334443333333445554432 34455556553
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=82.01 E-value=59 Score=32.61 Aligned_cols=124 Identities=14% Similarity=0.102 Sum_probs=72.1
Q ss_pred CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecC
Q psy6570 24 NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASID 103 (713)
Q Consensus 24 ~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~d 103 (713)
......+|++-+.+.+.|++-. -......-++........+...-...+.+.+-| +|.-|.|.+... ....+++.
T Consensus 185 H~gDV~slsl~p~~~ntFvSg~---cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSDD~-tcRlyDlR 259 (343)
T KOG0286|consen 185 HTGDVMSLSLSPSDGNTFVSGG---CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSDDA-TCRLYDLR 259 (343)
T ss_pred CcccEEEEecCCCCCCeEEecc---cccceeeeeccCcceeEeecccccccceEEEcc-CCCeeeecCCCc-eeEEEeec
Confidence 3455677888777889998876 344444555443333333333346688888886 678888876544 56666665
Q ss_pred CCCcEEEEeC--CCCCCeeEEEeCCCCeEEEEcCCCCcEEEEe-CCCCceeEE
Q psy6570 104 GKNKFNLVDN--NIQWPTGITIDYPSQRLYWADPKARTIESIN-LNGKDRFVV 153 (713)
Q Consensus 104 G~~~~~l~~~--~~~~p~glavd~~~~~LY~~d~~~~~I~~~~-~~g~~~~~~ 153 (713)
......++.. .+...+.++|. ..+||.++-.....+.+-| +.+....+|
T Consensus 260 aD~~~a~ys~~~~~~gitSv~FS-~SGRlLfagy~d~~c~vWDtlk~e~vg~L 311 (343)
T KOG0286|consen 260 ADQELAVYSHDSIICGITSVAFS-KSGRLLFAGYDDFTCNVWDTLKGERVGVL 311 (343)
T ss_pred CCcEEeeeccCcccCCceeEEEc-ccccEEEeeecCCceeEeeccccceEEEe
Confidence 4433334332 23345789998 5667766755444444444 334333333
|
|
| >PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=81.66 E-value=63 Score=32.65 Aligned_cols=112 Identities=15% Similarity=0.195 Sum_probs=63.8
Q ss_pred EEEeccCCeEEEeecCC-------C-----------CCCeEEEEecCCceEEEEEcCCC-------CCcceEEEcCCCCc
Q psy6570 31 VAVDWVGKNLYWTDAGG-------R-----------SSNNIMVSTLEGRKKRTLLNTGL-------NEPYDIALEPLSGR 85 (713)
Q Consensus 31 la~D~~~~~ly~td~~~-------~-----------~~~~I~~~~~~G~~~~~l~~~~~-------~~p~~iavD~~~~~ 85 (713)
=|++|..+.||+--|-- + .-..|..+|.+...++.|..+.+ ....+|..||.+..
T Consensus 40 NAV~~vDd~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~ 119 (339)
T PF09910_consen 40 NAVEWVDDFIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDR 119 (339)
T ss_pred eeeeeecceEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCE
Confidence 46777777888655421 0 01235556655556667766543 34568999999999
Q ss_pred EEEEccC--CCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEc----CCCCcEEEEeCCC
Q psy6570 86 MFWTELG--IKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWAD----PKARTIESINLNG 147 (713)
Q Consensus 86 ly~td~~--~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d----~~~~~I~~~~~~g 147 (713)
||++-.. .+--|++++..+...+.|.. ...+.|..+. +..+++- .+...|+.+|+.-
T Consensus 120 LLlAR~DGh~nLGvy~ldr~~g~~~~L~~--~ps~KG~~~~---D~a~F~i~~~~~g~~~i~~~Dli~ 182 (339)
T PF09910_consen 120 LLLARADGHANLGVYSLDRRTGKAEKLSS--NPSLKGTLVH---DYACFGINNFHKGVSGIHCLDLIS 182 (339)
T ss_pred EEEEecCCcceeeeEEEcccCCceeeccC--CCCcCceEee---eeEEEeccccccCCceEEEEEccC
Confidence 9998543 33456777665555555543 2334555444 2333332 2334566666543
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=81.50 E-value=61 Score=36.23 Aligned_cols=157 Identities=10% Similarity=0.070 Sum_probs=88.5
Q ss_pred CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCC---CCCcce--EEEcCCCCcEEEEccCCCCeEE
Q psy6570 24 NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG---LNEPYD--IALEPLSGRMFWTELGIKPRIS 98 (713)
Q Consensus 24 ~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~---~~~p~~--iavD~~~~~ly~td~~~~~~I~ 98 (713)
+.....--|+-|.++.|-+.-- ..-+|++...++..+...+..- +..... +.+| +..||+... ....++
T Consensus 381 ~~~nIs~~aiSPdg~~Ia~st~---~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid--~~k~~~~s~-~~~~le 454 (691)
T KOG2048|consen 381 EKENISCAAISPDGNLIAISTV---SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTID--KNKLFLVSK-NIFSLE 454 (691)
T ss_pred CccceeeeccCCCCCEEEEeec---cceEEEEeccCcceeEEEeccchhhhccceeeEEEec--CceEEEEec-ccceeE
Confidence 3333444456666666666655 5678999998884333333211 111222 3454 344444332 233678
Q ss_pred EEecCCCCcEEEEe---C-CCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeee-CCeE
Q psy6570 99 GASIDGKNKFNLVD---N-NIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF-EDNL 173 (713)
Q Consensus 99 ~~~~dG~~~~~l~~---~-~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~-~~~l 173 (713)
.+.+++...+.+.. + .-....-|++.+.+++|-+++ ..+.|+.+++.+...+.+...........++..+ .++|
T Consensus 455 ~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~-t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~l 533 (691)
T KOG2048|consen 455 EFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS-TRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRL 533 (691)
T ss_pred EEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe-ccceEEEEEcccceeecchhccCcceeeeeccccccCcE
Confidence 88887766655542 1 233456789999899988888 6678999999887666655321111122233322 3455
Q ss_pred EEEeCCCCcEEEEcc
Q psy6570 174 YFSTYRTNNILKINK 188 (713)
Q Consensus 174 y~td~~~~~i~~~~~ 188 (713)
-+++ .++.|+.++.
T Consensus 534 vvat-s~nQv~efdi 547 (691)
T KOG2048|consen 534 VVAT-SNNQVFEFDI 547 (691)
T ss_pred EEEe-cCCeEEEEec
Confidence 5554 4456776665
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=80.99 E-value=50 Score=34.75 Aligned_cols=111 Identities=11% Similarity=0.055 Sum_probs=63.2
Q ss_pred CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCC-CeEEEEecCC
Q psy6570 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIK-PRISGASIDG 104 (713)
Q Consensus 26 ~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~-~~I~~~~~dG 104 (713)
....+||+.+. +.|..+-. ....++| -|+.......++..-+....+|+++| +|+..-|..+.+ -+||...+
T Consensus 304 ~~v~~iaf~~D-GSL~~tGG-lD~~~Rv--WDlRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~-- 376 (459)
T KOG0272|consen 304 KGVFSIAFQPD-GSLAATGG-LDSLGRV--WDLRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRM-- 376 (459)
T ss_pred cccceeEecCC-CceeeccC-ccchhhe--eecccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecc--
Confidence 34677888765 55554433 1122333 34433323333334467788999997 788888876644 24555444
Q ss_pred CCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEE
Q psy6570 105 KNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESI 143 (713)
Q Consensus 105 ~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~ 143 (713)
.....++....+....+-+++..++..++-...+.+..-
T Consensus 377 r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiW 415 (459)
T KOG0272|consen 377 RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIW 415 (459)
T ss_pred cccceecccccchhhheEecccCCeEEEEcccCcceeee
Confidence 333333333445567888888777777776655554443
|
|
| >cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity | Back alignment and domain information |
|---|
Probab=80.67 E-value=1.2 Score=43.67 Aligned_cols=34 Identities=24% Similarity=0.491 Sum_probs=26.6
Q ss_pred CccCCCCCCCCCCCCeeeccCCCceeeeCCCCcc
Q psy6570 218 NVTNHCDDKPCHQSALCINLPSSHTCLCPDHLTE 251 (713)
Q Consensus 218 ~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~~ 251 (713)
...++|...+....+.|++.+|+|.|.|++||+.
T Consensus 185 ~~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~ 218 (224)
T cd01475 185 VVPDLCATLSHVCQQVCISTPGSYLCACTEGYAL 218 (224)
T ss_pred cCchhhcCCCCCccceEEcCCCCEEeECCCCccC
Confidence 3567887543223689999999999999999984
|
Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=80.60 E-value=5.7 Score=42.21 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=35.2
Q ss_pred CcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeC-----C--------------CCCCeeEEEeCCCCeEEEE
Q psy6570 73 EPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDN-----N--------------IQWPTGITIDYPSQRLYWA 133 (713)
Q Consensus 73 ~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~-----~--------------~~~p~glavd~~~~~LY~~ 133 (713)
.|.+|.|...+++||++.|... .|+..++.....-.++.. . ...|.-|.++.+++||||+
T Consensus 313 LitDI~iSlDDrfLYvs~W~~G-dvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHG-DVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTT-EEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred ceEeEEEccCCCEEEEEcccCC-cEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 4678888888999999999866 888888876544444321 0 1247778888889999999
Q ss_pred cC
Q psy6570 134 DP 135 (713)
Q Consensus 134 d~ 135 (713)
.+
T Consensus 392 nS 393 (461)
T PF05694_consen 392 NS 393 (461)
T ss_dssp --
T ss_pred ee
Confidence 63
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=80.56 E-value=70 Score=32.50 Aligned_cols=154 Identities=12% Similarity=0.089 Sum_probs=83.8
Q ss_pred CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceE-EEcCCCCcEEEEccCC-CCeEEEEecC
Q psy6570 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDI-ALEPLSGRMFWTELGI-KPRISGASID 103 (713)
Q Consensus 26 ~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~i-avD~~~~~ly~td~~~-~~~I~~~~~d 103 (713)
....+|-++ .++|.++-. ++|+++......+....-+....|+|+ +++|....-+.+--+. .+.|...++.
T Consensus 95 ~~I~~V~l~--r~riVvvl~-----~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~ 167 (346)
T KOG2111|consen 95 SEIKAVKLR--RDRIVVVLE-----NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLA 167 (346)
T ss_pred cceeeEEEc--CCeEEEEec-----CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhh
Confidence 334555554 455555543 578887766444333222345678884 6677666655554342 2588888887
Q ss_pred CCCc--EEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCc-EEEEeC-CCCceeEEEecCCCCccceeeeee--CCeEEEEe
Q psy6570 104 GKNK--FNLVDNNIQWPTGITIDYPSQRLYWADPKART-IESINL-NGKDRFVVYHTEDNGYKPYKLEVF--EDNLYFST 177 (713)
Q Consensus 104 G~~~--~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~-I~~~~~-~g~~~~~~~~~~~~~~~p~~i~~~--~~~ly~td 177 (713)
-... ..++........=++|... +.+.-+-+..+. |+.++. +|.....+..... ...-+-|++. ..+|-++
T Consensus 168 ~~~~~~p~~I~AH~s~Iacv~Ln~~-Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d-~A~iy~iaFSp~~s~Lavs- 244 (346)
T KOG2111|consen 168 STKPNAPSIINAHDSDIACVALNLQ-GTLVATASTKGTLIRIFDTEDGTLLQELRRGVD-RADIYCIAFSPNSSWLAVS- 244 (346)
T ss_pred hcCcCCceEEEcccCceeEEEEcCC-ccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc-hheEEEEEeCCCccEEEEE-
Confidence 6655 2444444445566778744 455445555555 555564 6666666654432 2233445554 3344443
Q ss_pred CCCCcEEEEccc
Q psy6570 178 YRTNNILKINKF 189 (713)
Q Consensus 178 ~~~~~i~~~~~~ 189 (713)
..+++|..+...
T Consensus 245 SdKgTlHiF~l~ 256 (346)
T KOG2111|consen 245 SDKGTLHIFSLR 256 (346)
T ss_pred cCCCeEEEEEee
Confidence 345555555443
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=80.49 E-value=35 Score=36.59 Aligned_cols=114 Identities=9% Similarity=0.039 Sum_probs=74.7
Q ss_pred eEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCc-ceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcE
Q psy6570 30 GVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEP-YDIALEPLSGRMFWTELGIKPRISGASIDGKNKF 108 (713)
Q Consensus 30 gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p-~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~ 108 (713)
-|.+.+..+.|..+-+ ..+.|...|..|.....-+......| .||.+.|.+..|+++-.... +|+.++...+...
T Consensus 169 ll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dk-ki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDK-KINIYDIRSQAST 244 (673)
T ss_pred EeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccc-eEEEeeccccccc
Confidence 4555666667777666 67788888888765543333333444 48999999999999875555 8888876643322
Q ss_pred -EEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCce
Q psy6570 109 -NLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDR 150 (713)
Q Consensus 109 -~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~ 150 (713)
.|+.. ..-..+||. +.+.+..+-...++|+.+|+.+...
T Consensus 245 ~~l~y~--~Plstvaf~-~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 245 DRLTYS--HPLSTVAFS-ECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred ceeeec--CCcceeeec-CCceEEEeecCCceEEEEecccCCC
Confidence 22211 112567887 4667777777888999999877543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 713 | ||||
| 3v65_B | 386 | Crystal Structure Of Agrin And Lrp4 Complex Length | 3e-39 | ||
| 1n7d_A | 699 | Extracellular Domain Of The Ldl Receptor Length = 6 | 6e-39 | ||
| 3m0c_C | 791 | The X-Ray Crystal Structure Of Pcsk9 In Complex Wit | 1e-38 | ||
| 3v64_C | 349 | Crystal Structure Of Agrin And Lrp4 Length = 349 | 1e-38 | ||
| 3p5c_L | 440 | The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE | 4e-37 | ||
| 3soq_A | 318 | The Structure Of The First Ywtd Beta Propeller Doma | 7e-37 | ||
| 3sob_B | 316 | The Structure Of The First Ywtd Beta Propeller Doma | 9e-37 | ||
| 3p5b_L | 400 | The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE | 1e-36 | ||
| 3s94_A | 619 | Crystal Structure Of Lrp6-E1e2 Length = 619 | 2e-36 | ||
| 4dg6_A | 616 | Crystal Structure Of Domains 1 And 2 Of Lrp6 Length | 2e-36 | ||
| 1ijq_A | 316 | Crystal Structure Of The Ldl Receptor Ywtd-Egf Doma | 2e-35 | ||
| 4a0p_A | 628 | Crystal Structure Of Lrp6p3e3p4e4 Length = 628 | 9e-35 | ||
| 3s8v_A | 623 | Crystal Structure Of Lrp6-Dkk1 Complex Length = 623 | 1e-34 | ||
| 3s2k_A | 629 | Structural Basis Of Wnt Signaling Inhibition By Dic | 1e-34 | ||
| 1npe_A | 267 | Crystal Structure Of Nidogen/laminin Complex Length | 1e-18 | ||
| 2ygq_A | 324 | Wif Domain-Epidermal Growth Factor (Egf)-Like Domai | 3e-14 | ||
| 2ygq_A | 324 | Wif Domain-Epidermal Growth Factor (Egf)-Like Domai | 4e-13 | ||
| 2ygq_A | 324 | Wif Domain-Epidermal Growth Factor (Egf)-Like Domai | 4e-05 | ||
| 4d90_A | 143 | Crystal Structure Of Del-1 Egf Domains Length = 143 | 1e-09 | ||
| 4d90_A | 143 | Crystal Structure Of Del-1 Egf Domains Length = 143 | 1e-04 | ||
| 2vj3_A | 135 | Human Notch-1 Egfs 11-13 Length = 135 | 1e-07 | ||
| 2vj3_A | 135 | Human Notch-1 Egfs 11-13 Length = 135 | 4e-06 | ||
| 1toz_A | 116 | Nmr Structure Of The Human Notch-1 Ligand Binding R | 5e-07 | ||
| 1toz_A | 116 | Nmr Structure Of The Human Notch-1 Ligand Binding R | 4e-05 | ||
| 1toz_A | 116 | Nmr Structure Of The Human Notch-1 Ligand Binding R | 6e-05 | ||
| 2gy5_A | 423 | Tie2 Ligand-Binding Domain Crystal Structure Length | 1e-06 |
| >pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386 | Back alignment and structure |
|
| >pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699 | Back alignment and structure |
|
| >pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791 | Back alignment and structure |
|
| >pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4 Length = 349 | Back alignment and structure |
|
| >pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440 | Back alignment and structure |
|
| >pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318 | Back alignment and structure |
|
| >pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316 | Back alignment and structure |
|
| >pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400 | Back alignment and structure |
|
| >pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619 | Back alignment and structure |
|
| >pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616 | Back alignment and structure |
|
| >pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair Length = 316 | Back alignment and structure |
|
| >pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4 Length = 628 | Back alignment and structure |
|
| >pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex Length = 623 | Back alignment and structure |
|
| >pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp56. Length = 629 | Back alignment and structure |
|
| >pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267 | Back alignment and structure |
|
| >pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3 Of Human Wnt Inhibitory Factor 1 In Complex With 1,2-Dipalmitoylphosphatidylcholine Length = 324 | Back alignment and structure |
|
| >pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3 Of Human Wnt Inhibitory Factor 1 In Complex With 1,2-Dipalmitoylphosphatidylcholine Length = 324 | Back alignment and structure |
|
| >pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3 Of Human Wnt Inhibitory Factor 1 In Complex With 1,2-Dipalmitoylphosphatidylcholine Length = 324 | Back alignment and structure |
|
| >pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains Length = 143 | Back alignment and structure |
|
| >pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains Length = 143 | Back alignment and structure |
|
| >pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13 Length = 135 | Back alignment and structure |
|
| >pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13 Length = 135 | Back alignment and structure |
|
| >pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region Length = 116 | Back alignment and structure |
|
| >pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region Length = 116 | Back alignment and structure |
|
| >pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region Length = 116 | Back alignment and structure |
|
| >pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure Length = 423 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 200 bits (509), Expect = 3e-59
Identities = 52/197 (26%), Positives = 98/197 (49%), Gaps = 15/197 (7%)
Query: 2 ASISSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR 61
AS+ G T + + +L P G+A+D +G+ ++WTD+ I V+ ++G
Sbjct: 63 ASLHGGEPTTI--------IRQDLGSPEGIALDHLGRTIFWTDSQLDR---IEVAKMDGT 111
Query: 62 KKRTLLNTGLNEPYDIALEPLSGRMFWTELGI-KPRISGASIDGKNKFNLVDNNIQWPTG 120
++R L +TGL P I +P+ G ++WT+ P+I + +DG N+ L +N+ P G
Sbjct: 112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNG 171
Query: 121 ITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRT 180
+T D S +L W D E +N R V P+ + + NLY++ ++T
Sbjct: 172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---GLQYPFAVTSYGKNLYYTDWKT 228
Query: 181 NNILKINKFGNSDFNVL 197
N+++ ++ + + +
Sbjct: 229 NSVIAMDLAISKEMDTF 245
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 1e-31
Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 11/187 (5%)
Query: 20 TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIAL 79
+ G+A D V K +YWTD S I ++L G + T++ L P IAL
Sbjct: 30 FLHIPAKVIIGLAFDCVDKVVYWTDISEPS---IGRASLHGGEPTTIIRQDLGSPEGIAL 86
Query: 80 EPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWAD--PKA 137
+ L +FWT+ + RI A +DG + L D + P GI D LYW D
Sbjct: 87 DHLGRTIFWTDSQLD-RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDN 145
Query: 138 RTIESINLNGKDRFVVYHTEDNGYKPYKLEV--FEDNLYFSTYRTNNILKINKFGNSDFN 195
IE+ +++G +R ++ +DN P L F L + T+ +N
Sbjct: 146 PKIETSHMDGTNRRIL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN-PAQPGRR 202
Query: 196 VLANNLN 202
+ L
Sbjct: 203 KVLEGLQ 209
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 3e-27
Identities = 34/158 (21%), Positives = 65/158 (41%), Gaps = 7/158 (4%)
Query: 17 NLKTVLS-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPY 75
+ + L +PRG+ D V NLYWTD R + I S ++G +R L L P
Sbjct: 112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN-RDNPKIETSHMDGTNRRILAQDNLGLPN 170
Query: 76 DIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADP 135
+ + S ++ W + G R + + ++ +Q+P +T + LY+ D
Sbjct: 171 GLTFDAFSSQLCWVDAGTH-RAECLNPAQPGRRKVL-EGLQYPFAVTSY--GKNLYYTDW 226
Query: 136 KARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNL 173
K ++ +++L +H + Y + +
Sbjct: 227 KTNSVIAMDLAISKEMDTFHPHKQT-RLYGITIALSQC 263
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 7e-23
Identities = 36/188 (19%), Positives = 76/188 (40%), Gaps = 17/188 (9%)
Query: 37 GKNLYWTDAGGRSSNNIMVSTLEGRK-----KRTLLNTGLNEPYDIALEPLSGRMFWTEL 91
G +L + + I LE + L+ +A + + ++WT++
Sbjct: 1 GTHLLFAQ-----TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDI 55
Query: 92 GIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRF 151
+P I AS+ G ++ ++ P GI +D+ + ++W D + IE ++G R
Sbjct: 56 S-EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR 114
Query: 152 VVYHTEDNGYKPYKLEV--FEDNLYFSTYRTNN--ILKINKFGNSDFNVLANNLNRASDV 207
V++ T P + NLY++ + +N I + G + + +NL + +
Sbjct: 115 VLFDT--GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGL 172
Query: 208 LILQENKQ 215
+ Q
Sbjct: 173 TFDAFSSQ 180
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316 | Back alignment and structure |
|---|
Score = 199 bits (507), Expect = 2e-58
Identities = 83/258 (32%), Positives = 130/258 (50%), Gaps = 14/258 (5%)
Query: 3 SISSGNVTRVKREMNLKTVL-SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR 61
I S + R + TV+ ++ P G+AVDW+ N+YWTD+ + + V+ +G
Sbjct: 53 MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT---VSVADTKGV 109
Query: 62 KKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGI 121
K++TL ++P I ++P+ G M+WT+ G +I ++G + ++LV NIQWP GI
Sbjct: 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI 169
Query: 122 TIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTN 181
T+D S RLYW D K +I SI++NG +R + E P+ L VFED ++++
Sbjct: 170 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINE 229
Query: 182 NILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQ---SALCINLP 238
I N+ SD N+LA NL D+++ Q N C+ LC+ P
Sbjct: 230 AIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQ-PRGVNWCERTTLSNGGCQYLCLPAP 288
Query: 239 ------SSHTCLCPDHLT 250
TC CPD +
Sbjct: 289 QINPHSPKFTCACPDGML 306
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 1e-14
Identities = 30/181 (16%), Positives = 77/181 (42%), Gaps = 12/181 (6%)
Query: 40 LYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISG 99
L++T+ + + TL+ + +L+ L + E S R++W++L + I
Sbjct: 4 LFFTN-----RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQR-MICS 56
Query: 100 ASIDGKNKFN----LVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYH 155
+D + + ++ +IQ P G+ +D+ +YW D T+ + G R ++
Sbjct: 57 TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR 116
Query: 156 TEDNGYKPYKLEVFEDNLYFSTYRTNN-ILKINKFGNSDFNVLANNLNRASDVLILQENK 214
+ + ++ +Y++ + T I K G ++++ N+ + + + +
Sbjct: 117 ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG 176
Query: 215 Q 215
+
Sbjct: 177 R 177
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 191 bits (486), Expect = 2e-55
Identities = 78/233 (33%), Positives = 125/233 (53%), Gaps = 6/233 (2%)
Query: 19 KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIA 78
V+S L P G+A DW+G+ LYWTD+ I VS L+G ++ L L++P IA
Sbjct: 72 NVVVSGLLSPDGLACDWLGEKLYWTDSETNR---IEVSNLDGSLRKVLFWQELDQPRAIA 128
Query: 79 LEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKAR 138
L+P SG M+WT+ G P+I A +DG ++F ++++ I WP G+T+DY Q+LYWAD K
Sbjct: 129 LDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLN 188
Query: 139 TIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLA 198
I NL+G +R V + P+ L +FED LY++ + T++IL NK+ +
Sbjct: 189 FIHKSNLDGTNRQAVVKG--SLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH 246
Query: 199 NNLNRASDVLILQENKQAH-NVTNHCDDKPCHQSALCINLPSSHTCLCPDHLT 250
+++ D+ + +Q + D+ C L + + C CP +
Sbjct: 247 SDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVK 299
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 1e-24
Identities = 54/281 (19%), Positives = 103/281 (36%), Gaps = 18/281 (6%)
Query: 20 TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR-KKRTLLNTGLNEPYDIA 78
V+ L D V + +YW+D + I + + ++ +GL P +A
Sbjct: 29 IVVGGLEDAAAVDFVFSHGLIYWSDVSEEA---IKRTEFNKTESVQNVVVSGLLSPDGLA 85
Query: 79 LEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWAD-PKA 137
+ L +++WT+ RI +++DG + L + P I +D S +YW D +
Sbjct: 86 CDWLGEKLYWTDSETN-RIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV 144
Query: 138 RTIESINLNGKDRFVVYHTEDNGYKPYKLEV--FEDNLYFSTYRTNNILKINKFGNSDFN 195
IE ++G RF++ Y P L + E LY++ + N I K N G +
Sbjct: 145 PKIERAGMDGSSRFII--INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA 202
Query: 196 VLANNLNRASDVLILQEN----KQAHNVTNHCDDKPCHQSALCINLPSSHTCLCPDHLTE 251
V+ +L + + ++ + + C+ + S +
Sbjct: 203 VVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQR 262
Query: 252 ELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLCPDHLT 292
+ N T+ C C + + C CP +
Sbjct: 263 QPNATNPCGI----DNGGCSHLCLMSPVKPFYQCACPTGVK 299
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 83.2 bits (205), Expect = 2e-17
Identities = 31/170 (18%), Positives = 77/170 (45%), Gaps = 4/170 (2%)
Query: 49 SSNNIMVSTLE-GRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNK 107
+ ++ + G++ T++ GL + + G ++W+++ + I +
Sbjct: 11 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEE-AIKRTEFNKTES 69
Query: 108 F-NLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKL 166
N+V + + P G+ D+ ++LYW D + IE NL+G R V++ E + + L
Sbjct: 70 VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIAL 129
Query: 167 EVFEDNLYFSTYRTN-NILKINKFGNSDFNVLANNLNRASDVLILQENKQ 215
+ +Y++ + I + G+S F ++ + + + + + E ++
Sbjct: 130 DPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQK 179
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 1e-52
Identities = 81/236 (34%), Positives = 125/236 (52%), Gaps = 6/236 (2%)
Query: 21 VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80
V + L P G+AVDWV LYWTD+G ++ I V+ L+G ++ LL L +P IAL
Sbjct: 154 VSTGLESPGGLAVDWVHDKLYWTDSG---TSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210
Query: 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTI 140
P+ G ++WT+ G PRI +S+DG + + D ++ WP G+TIDY +R+YW D K I
Sbjct: 211 PMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI 270
Query: 141 ESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANN 200
E NL+G R V P+ + VFED+LY++ + T +I NKF + ++ N
Sbjct: 271 ERANLDGSHRKAVIS--QGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNK 328
Query: 201 LNRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVT 256
L+ D+ L +Q D+ + LC+ ++TC CP + +
Sbjct: 329 LHFPMDIHTLHPQRQPAGKNRCGDN-NGGCTHLCLPSGQNYTCACPTGFRKINSHA 383
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 1e-06
Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 5/150 (3%)
Query: 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRM 86
P + +G A ++ E L + + +
Sbjct: 75 RPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFH----HRRELV 130
Query: 87 FWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLN 146
FW+++ + RI A+++G N +V ++ P G+ +D+ +LYW D IE NL+
Sbjct: 131 FWSDVTLD-RILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD 189
Query: 147 GKDRFVVYHTEDNGYKPYKLEVFEDNLYFS 176
G R V+ + L E +Y++
Sbjct: 190 GAHRKVLLWQSLEKPRAIALHPMEGTIYWT 219
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 7e-05
Identities = 14/131 (10%), Positives = 28/131 (21%), Gaps = 2/131 (1%)
Query: 220 TNHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNL 279
+C+ + C + + C C + + + + A C C N
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCT--NS 60
Query: 280 PSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYG 339
+ C C + S K ++ EN
Sbjct: 61 EGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIA 120
Query: 340 TYCEKVNNSMC 350
+
Sbjct: 121 LDFHHRRELVF 131
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400 | Back alignment and structure |
|---|
Score = 179 bits (454), Expect = 4e-50
Identities = 78/239 (32%), Positives = 122/239 (51%), Gaps = 13/239 (5%)
Query: 21 VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80
+ ++ P G+AVDW+ N+YWTD+ + V+ +G K++TL ++P I ++
Sbjct: 154 ISRDIQAPDGLAVDWIHSNIYWTDSV---LGTVSVADTKGVKRKTLFRENGSKPRAIVVD 210
Query: 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTI 140
P+ G M+WT+ G +I ++G + ++LV NIQWP GIT+D S RLYW D K +I
Sbjct: 211 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 270
Query: 141 ESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANN 200
SI++NG +R + E P+ L VFED ++++ I N+ SD N+LA N
Sbjct: 271 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 330
Query: 201 LNRASDVLILQENKQAHNVTNHCDDKPCHQ---SALCINLPS------SHTCLCPDHLT 250
L D+++ Q N C+ LC+ P TC CPD +
Sbjct: 331 LLSPEDMVLFHNLTQPR-GVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGML 388
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 8e-06
Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Query: 67 LNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFN----LVDNNIQWPTGIT 122
L L + E S R++W++L + I +D + + ++ +IQ P G+
Sbjct: 107 LIPNLRNVVALDTEVASNRIYWSDLS-QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 165
Query: 123 IDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFS 176
+D+ +YW D T+ + G R ++ + + ++ +Y++
Sbjct: 166 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWT 219
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 2e-49
Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 8/230 (3%)
Query: 21 VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80
V + + P G+AVDWV +NLYWTD G ++ I V+ L G ++ L++ L EP I L+
Sbjct: 387 VTAQIAHPDGIAVDWVARNLYWTDTG---TDRIEVTRLNGTMRKILISEDLEEPRAIVLD 443
Query: 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTI 140
P+ G M+WT+ G P+I A++DG ++ LV+ ++ WP G+ +DY ++YW D K I
Sbjct: 444 PMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKI 503
Query: 141 ESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANN 200
E +N +G R V+ D + + D +Y++ ++ +I +++K V+ +
Sbjct: 504 EVMNTDGTGRRVLVE--DKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAER-EVIIDQ 560
Query: 201 LNRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHTCLCPDHLT 250
L + ++ + ++ C S LC+ P C CP
Sbjct: 561 LPDLMGLKATNVHRVIGSNPCAEENGGC--SHLCLYRPQGLRCACPIGFE 608
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 3e-49
Identities = 84/281 (29%), Positives = 136/281 (48%), Gaps = 6/281 (2%)
Query: 20 TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIAL 79
V+S L P G+A DW+G+ LYWTD+ N I VS L+G ++ L L++P IAL
Sbjct: 78 VVVSGLLSPDGLACDWLGEKLYWTDSET---NRIEVSNLDGSLRKVLFWQELDQPRAIAL 134
Query: 80 EPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKART 139
+P SG M+WT+ G P+I A +DG ++F ++++ I WP G+T+DY Q+LYWAD K
Sbjct: 135 DPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF 194
Query: 140 IESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLAN 199
I NL+G +R V + P+ L +FED LY++ + T++IL NK+ + +
Sbjct: 195 IHKSNLDGTNRQAVVKG--SLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHS 252
Query: 200 NLNRASDVLILQENKQAHNVTNHCDDK-PCHQSALCINLPSSHTCLCPDHLTEELNVTSG 258
++ D+ + +Q + D C L + + C CP + N +
Sbjct: 253 DIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC 312
Query: 259 KMSCKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNVTS 299
K D +L + L + + +
Sbjct: 313 KDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIA 353
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 79.5 bits (195), Expect = 1e-15
Identities = 31/164 (18%), Positives = 75/164 (45%), Gaps = 1/164 (0%)
Query: 53 IMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVD 112
+V G++ T++ GL + + G ++W+++ + ++ N+V
Sbjct: 21 RLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV 80
Query: 113 NNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDN 172
+ + P G+ D+ ++LYW D + IE NL+G R V++ E + + L+
Sbjct: 81 SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGF 140
Query: 173 LYFSTYRTN-NILKINKFGNSDFNVLANNLNRASDVLILQENKQ 215
+Y++ + I + G+S F ++ + + + + + E ++
Sbjct: 141 MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQK 184
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 179 bits (455), Expect = 2e-48
Identities = 60/230 (26%), Positives = 104/230 (45%), Gaps = 7/230 (3%)
Query: 23 SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPL 82
+ P +++D + +YWT I V+ L+GR +L + P + + P
Sbjct: 386 NLEIQPYDLSIDIYSRYIYWTCEATNV---INVTRLDGRSVGVVLKGEQDRPRAVVVNPE 442
Query: 83 SGRMFWTELG-IKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIE 141
G M++T L P+I A++DG + L + + P + +D +L+WAD R IE
Sbjct: 443 KGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIE 502
Query: 142 SINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNL 201
S +L+G +R V+ + N +P L VFE+ LY+ + I KI+ G + +
Sbjct: 503 SSDLSGANRIVLEDS--NILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARI 560
Query: 202 NRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPS-SHTCLCPDHLT 250
+ SD+ ++E + C S +C+ + C CP HL
Sbjct: 561 AQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLV 610
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 173 bits (438), Expect = 5e-46
Identities = 79/229 (34%), Positives = 124/229 (54%), Gaps = 10/229 (4%)
Query: 21 VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80
V L P G+AVDW+GKNLYW D G +N I VS L+G+ ++ L+ L+ P +AL+
Sbjct: 75 VEFGLDYPEGMAVDWLGKNLYWADTG---TNRIEVSKLDGQHRQVLVWKDLDSPRALALD 131
Query: 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTI 140
P G M+WTE G KP+I A++DG + LV N+ G+TIDY +RLYW D I
Sbjct: 132 PAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLI 190
Query: 141 ESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANN 200
ES N+ G +R V+ + P+ L ++D +Y++ + +I + NK + ++ +
Sbjct: 191 ESSNMLGLNREVIAD---DLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGH 247
Query: 201 LNRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLP-SSHTCLCPDH 248
L+ D+L+ ++Q+ + C LC+ +P C CP H
Sbjct: 248 LDYVMDILVFHSSRQSGWNECASSNGHCSH--LCLAVPVGGFVCGCPAH 294
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 2e-23
Identities = 48/291 (16%), Positives = 103/291 (35%), Gaps = 22/291 (7%)
Query: 14 REMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNE 73
N+ L+ + + + D +YWTD ++ I + + G ++ GL+
Sbjct: 25 NNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKT---ISRAFMNGSALEHVVEFGLDY 81
Query: 74 PYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWA 133
P +A++ L ++W + G RI + +DG+++ LV ++ P + +D +YW
Sbjct: 82 PEGMAVDWLGKNLYWADTGTN-RIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWT 140
Query: 134 D-PKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDN--LYFSTYRTNNILKINKFG 190
+ I+ ++G +R + N + L + LY++ TN I N G
Sbjct: 141 EWGGKPKIDRAAMDGSERTTLV---PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 197
Query: 191 NSDFNVLANNLNRASDVLILQ-------ENKQAHNVTNHCDDKPCHQSALCINLP----S 239
+ V+A++L + Q ++++ N + ++
Sbjct: 198 -LNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILV 256
Query: 240 SHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLCPDH 290
H+ + C P C ++ C
Sbjct: 257 FHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAP 307
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 99.1 bits (246), Expect = 8e-22
Identities = 43/286 (15%), Positives = 102/286 (35%), Gaps = 26/286 (9%)
Query: 22 LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGL------NEPY 75
+ +L + R + D + K LYW D N I + +G + T++ + + +PY
Sbjct: 336 IHSLRNVRAIDYDPLDKQLYWID---SRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPY 392
Query: 76 DIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWAD- 134
D++++ S ++WT I+ +DG++ ++ P + ++ +Y+ +
Sbjct: 393 DLSIDIYSRYIYWTCEA-TNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNL 451
Query: 135 -PKARTIESINLNGKDRFVVYHTEDNGYKPYKLEV--FEDNLYFSTYRTNNILKINKFGN 191
++ IE L+G +R V++ + KP L + L+++ I + G
Sbjct: 452 QERSPKIERAALDGTEREVLFFS--GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGA 509
Query: 192 SDFNVLANNLNRASDVLILQEN----KQAHNVTNHCDDKPCHQSALCINLPSSHTCLCPD 247
+ + +N+ + + + + + + D + + +
Sbjct: 510 NRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAV 569
Query: 248 HLTEELNVTSGKMSCKVAPAR-TCYLDCNHGNLPSSHTCLCPDHLT 292
+ C + + C CP HL
Sbjct: 570 KELNLQEYRQHPCAQDNGGCSHICLV-----KGDGTTRCSCPMHLV 610
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 89.9 bits (222), Expect = 9e-19
Identities = 58/333 (17%), Positives = 110/333 (33%), Gaps = 36/333 (10%)
Query: 40 LYWTDAGGRSSNNIMVSTLEGRK-KRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRIS 98
L ++ +I +LE + TG+ E + + R++WT++ +K IS
Sbjct: 9 LLFSR-----RADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLK-TIS 62
Query: 99 GASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTED 158
A ++G ++V+ + +P G+ +D+ + LYWAD IE L+G+ R V+
Sbjct: 63 RAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWK-- 120
Query: 159 NGYKPYKLEV--FEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQA 216
+ P L + E +Y++ + + S+ L N+ RA+ + I ++
Sbjct: 121 DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRL 180
Query: 217 -----------------HNVTNHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGK 259
N DD P H L + E N TSG+
Sbjct: 181 YWTDLDTNLIESSNMLGLNREVIADDLP-HPFGLTQYQDYIYWTDWSRRSIERANKTSGQ 239
Query: 260 MSCKVAPART---CYLDCNHGNLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDC 316
+ L + + C + L + L+
Sbjct: 240 NRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNA 299
Query: 317 NHGTCEFDD----DFDPHCICQENFYGTYCEKV 345
++ TC I + +
Sbjct: 300 DNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDI 332
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 67.5 bits (164), Expect = 7e-12
Identities = 33/194 (17%), Positives = 69/194 (35%), Gaps = 15/194 (7%)
Query: 34 DWVGKNLYWTDAGGRSSNNIMVSTLEGRKKR--TLLNTGLNEPYDIALEPLSGRMFWTEL 91
D + T + I ++ ++ L L I +PL +++W +
Sbjct: 300 DNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDS 359
Query: 92 GIKPRISGASIDGKNKFNLVDNNIQ------WPTGITIDYPSQRLYWADPKARTIESINL 145
I A DG F +V +++ P ++ID S+ +YW I L
Sbjct: 360 RQN-MIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRL 418
Query: 146 NGKDRFVVYHTEDNGYKPYKLEV--FEDNLYFSTYRTNN--ILKINKFGNSDFNVLANNL 201
+G+ VV +P + V + +YF+ + + I + G + + L
Sbjct: 419 DGRSVGVVLKG--EQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGL 476
Query: 202 NRASDVLILQENKQ 215
++ + + +
Sbjct: 477 SKPIALALDSRLGK 490
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349 | Back alignment and structure |
|---|
Score = 172 bits (436), Expect = 4e-48
Identities = 83/236 (35%), Positives = 124/236 (52%), Gaps = 6/236 (2%)
Query: 21 VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80
V + L P G+AVDWV LYWTD+G I V+ L+G ++ LL L +P IAL
Sbjct: 111 VSTGLESPGGLAVDWVHDKLYWTDSGTSR---IEVANLDGAHRKVLLWQSLEKPRAIALH 167
Query: 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTI 140
P+ G ++WT+ G PRI +S+DG + + D ++ WP G+TIDY +R+YW D K I
Sbjct: 168 PMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI 227
Query: 141 ESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANN 200
E NL+G R V P+ + VFED+LY++ + T +I NKF + ++ N
Sbjct: 228 ERANLDGSHRKAVIS--QGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNK 285
Query: 201 LNRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVT 256
L+ D+ L +Q N C D + LC+ ++TC CP + +
Sbjct: 286 LHFPMDIHTLHPQRQ-PAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKINSHA 340
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 1e-09
Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 10/192 (5%)
Query: 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRM 86
P + +G A +I + TLL L + +
Sbjct: 32 RPDRRSCKALGPEPVLLFANR---IDIRQVLPHRSE-YTLLLNNLENAIALDFHHRRELV 87
Query: 87 FWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLN 146
FW+++ + RI A+++G N +V ++ P G+ +D+ +LYW D IE NL+
Sbjct: 88 FWSDVTLD-RILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD 146
Query: 147 GKDRFVVYHTEDNGYKPYKLEV--FEDNLYFSTY-RTNNILKINKFGNSDFNVLANNLNR 203
G R V+ + KP + + E +Y++ + T I + G+ + +L
Sbjct: 147 GAHRKVLLWQ--SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW 204
Query: 204 ASDVLILQENKQ 215
+ + I ++
Sbjct: 205 PNGLTIDYAGRR 216
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 160 bits (404), Expect = 4e-41
Identities = 84/300 (28%), Positives = 130/300 (43%), Gaps = 17/300 (5%)
Query: 21 VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80
+ ++ P G+AVDW+ N+YWTD+ + V+ +G K++TL ++P I ++
Sbjct: 466 ISRDIQAPDGLAVDWIHSNIYWTDSV---LGTVSVADTKGVKRKTLFRENGSKPRAIVVD 522
Query: 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTI 140
P+ G M+WT+ G +I ++G + ++LV NIQWP GIT+D S RLYW D K +I
Sbjct: 523 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 582
Query: 141 ESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANN 200
SI++NG +R + E P+ L VFED ++++ I N+ SD N+LA N
Sbjct: 583 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 642
Query: 201 LNRASDVLILQENKQAHNVTNHCDDKPCHQ---SALCINLPS------SHTCLCPDHLTE 251
L D+++ Q N C+ LC+ P TC CPD +
Sbjct: 643 LLSPEDMVLFHNLTQPR-GVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGML- 700
Query: 252 ELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNVTSGKMSCKVAPART 311
+ SC + T V P T
Sbjct: 701 ---LARDMRSCLTEAEAAVATQETSTVRLKVSSTAVRTQHTTTRPVPDTSRLPGATPGLT 757
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 1e-04
Identities = 69/449 (15%), Positives = 111/449 (24%), Gaps = 66/449 (14%)
Query: 284 TCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTC---EFDDDFDPHCICQENFYGT 340
L T+ C C G C ++ D C +
Sbjct: 4 KLRWTVALLLAAAGTAVGDRC-----ERNEFQCQDGKCISYKWVCDGSAECQDGSDESQE 58
Query: 341 YCEKVN--NSMCPCLNQ-GMCYPDLTHPEPTYKC----HCAPSYTGARCESRIC---ENK 390
C V + C + C P ++C C C + C E +
Sbjct: 59 TCLSVTCKSGDFSCGGRVNRCIP------QFWRCDGQVDCDNGSDEQGCPPKTCSQDEFR 112
Query: 391 CHNGGTCIATTQTC-------------VCPPGFTGDTCQQCLNLKCQNGG-------VCV 430
CH+G CI+ C CP G QC + C C
Sbjct: 113 CHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCE 171
Query: 431 NKTTGLECDCPKFYY----GKNCQYSQCKNYCVNGECSITDSGPKC----MCSPGYSGKK 482
+ + C Y C + C++GEC S +C C +
Sbjct: 172 DGSDEWPQRCRGLYVFQGDSSPCSAFEFH--CLSGEC--IHSSWRCDGGPDCKDKSDEEN 227
Query: 483 CDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECA 542
C TC + CS G C C S C + G +
Sbjct: 228 CAVATCRPD----EFQCSDGNCIHGSRQCDREYD--CKDMSDEVGCVNVTLCEGP-NKFK 280
Query: 543 VGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGK--QCTEREDSPSCHNYCD 600
C +L C + + I+ + +CL G C + + C
Sbjct: 281 CHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDG 340
Query: 601 NAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICP 660
+ + C + S + + C G + +
Sbjct: 341 FQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFF 400
Query: 661 RGYAGVRCQTLVHYISKKQSYVNSHISSI 689
VR TL ++ ++
Sbjct: 401 TNRHEVRKMTLDRSEYTSLIPNLRNVVAL 429
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 158 bits (400), Expect = 9e-41
Identities = 78/239 (32%), Positives = 123/239 (51%), Gaps = 13/239 (5%)
Query: 21 VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80
+ ++ P G+AVDW+ N+YWTD+ + V+ +G K++TL ++P I ++
Sbjct: 448 ISRDIQAPDGLAVDWIHSNIYWTDSV---LGTVSVADTKGVKRKTLFREQGSKPRAIVVD 504
Query: 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTI 140
P+ G M+WT+ G +I ++G + ++LV NIQWP GIT+D S RLYW D K +I
Sbjct: 505 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 564
Query: 141 ESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANN 200
SI++NG +R + E P+ L VFED ++++ I N+ SD N+LA N
Sbjct: 565 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 624
Query: 201 LNRASDVLILQENKQAHNVTNHCDDKPCHQ---SALCINLPS------SHTCLCPDHLT 250
L D+++ + Q N C+ LC+ P TC CPD +
Sbjct: 625 LLSPEDMVLFHQLTQPR-GVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGML 682
|
| >2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 1e-33
Identities = 64/245 (26%), Positives = 83/245 (33%), Gaps = 39/245 (15%)
Query: 340 TYCEKVNNSMCPCLNQGMCYP-------DLTHPEPTYKCHCAPSYTGARCESRICENKCH 392
+ V PCL + + T + C+ C C
Sbjct: 97 PHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAECPGGCR 156
Query: 393 NGGTCIATTQTCVCPPGFTGDTCQQCLNL-KCQNGGVCVNKTTGLECDCPKFYYGKNCQY 451
NGG C C CP GF G C++ L +C NGG+CV C CP +YG NC
Sbjct: 157 NGGFCNERR-ICECPDGFHGPHCEKALCTPRCMNGGLCVTPGF---CICPPGFYGVNCDK 212
Query: 452 SQCKNYCVN-GECSITDSGPKCMCSPGYSGKKCDTCTCLNG-------DSGPKCMCSPGY 503
+ C C N G C KC+C PG G++C+ C KC CS GY
Sbjct: 213 ANCSTTCFNGGTCFYPG---KCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGY 269
Query: 504 SGKKC----DTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNY 559
G C C GTC N C+C + GR C
Sbjct: 270 QGDLCSKPVCEPGCGAHGTCHE---PNKCQCQEGWHGRHCNKRY---------EASLIGT 317
Query: 560 CSNNG 564
++
Sbjct: 318 KHHHH 322
|
| >2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-28
Identities = 63/270 (23%), Positives = 82/270 (30%), Gaps = 65/270 (24%)
Query: 401 TQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVN 460
C G + + V ++ + + K CQ ++C C N
Sbjct: 104 QVGFPCLGKQDGVAAFEV------DVIVMNSEGNTILKTPQNAIFFKTCQQAECPGGCRN 157
Query: 461 GECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCI 520
G C C G+ G C+ C C+NGG C+
Sbjct: 158 GGFCN--ERRICECPDGFHGPHCEKALCTPR---------------------CMNGGLCV 194
Query: 521 PNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPP 580
C CP + G C+ C N GTC C C P
Sbjct: 195 ---TPGFCICPPGFYGVNCD------------KANCSTTCFNGGTCF---YPGKCICPPG 236
Query: 581 YSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGG 640
G+QC + C C N G C GK C C G+ G CS+ V C C G
Sbjct: 237 LEGEQC----EISKCPQPCRNGGKCI----GKSKCKCSKGYQGDLCSKPV-CEPGCGAHG 287
Query: 641 TCREQNYSLDPDLKPICICPRGYAGVRCQT 670
TC E N C C G+ G C
Sbjct: 288 TCHEPN---------KCQCQEGWHGRHCNK 308
|
| >2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 64/285 (22%), Positives = 93/285 (32%), Gaps = 67/285 (23%)
Query: 217 HNVTNHCDDKPCHQSALCINLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNH 276
H + PC + +
Sbjct: 98 HKASVVQVGFPCLGKQDGVAAFEVDVIVMNSE---------------------------- 129
Query: 277 GNLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDC-NHGTCEFDDDFDPHCICQE 335
++ + + + +C+ A C C N G C C C +
Sbjct: 130 ---GNTILKTPQNAIFFK--------TCQQA---ECPGGCRNGGFCNERR----ICECPD 171
Query: 336 NFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGG 395
F+G +CEK + C+N G+C C C P + G C+ C C NGG
Sbjct: 172 GFHGPHCEKALCT-PRCMNGGLC-------VTPGFCICPPGFYGVNCDKANCSTTCFNGG 223
Query: 396 TCIATTQTCVCPPGFTGDTCQ--QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQ 453
TC C+CPPG G+ C+ +C C+NGG C+ +C C K Y G C
Sbjct: 224 TCFY-PGKCICPPGLEGEQCEISKCPQ-PCRNGGKCIG---KSKCKCSKGYQGDLCSKPV 278
Query: 454 CKNYCVN-GECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKC 497
C+ C G C KC C G+ G+ C+ G K
Sbjct: 279 CEPGCGAHGTCH---EPNKCQCQEGWHGRHCNKRYE-ASLIGTKH 319
|
| >2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 3e-16
Identities = 35/122 (28%), Positives = 43/122 (35%), Gaps = 18/122 (14%)
Query: 311 TCYLDC-NHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTY 369
C C N GTC + CIC G CE ++ PC N G C
Sbjct: 214 NCSTTCFNGGTCFYPG----KCICPPGLEGEQCE-ISKCPQPCRNGGKCIGK-------S 261
Query: 370 KCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQ----CLNLKCQN 425
KC C+ Y G C +CE C GTC C C G+ G C + L +
Sbjct: 262 KCKCSKGYQGDLCSKPVCEPGCGAHGTCHE-PNKCQCQEGWHGRHCNKRYEASLIGTKHH 320
Query: 426 GG 427
Sbjct: 321 HH 322
|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 2e-27
Identities = 56/353 (15%), Positives = 85/353 (24%), Gaps = 58/353 (16%)
Query: 331 CICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENK 390
C + + +T E + +
Sbjct: 362 SFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSF------------VIRAL 409
Query: 391 CHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQ 450
+ C C Q C G C C Y GKNC+
Sbjct: 410 GFTDIVTVQVLPQCECRCR-----DQSRDRSLCHGKGFLECGI----CRCDTGYIGKNCE 460
Query: 451 YSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMC-----SPGYSG 505
E S +CS G C C C D K + +
Sbjct: 461 CQTQGRSSQELEGSCRKDNNSIICS-GLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINC 519
Query: 506 KKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGT 565
++ + C G + C+C + G C+C C + CS G
Sbjct: 520 ERYNGQVCGGPGRGLCF--CGKCRCHPGFEGSACQCERTTEGCLN----PRRVECSGRGR 573
Query: 566 CVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGIT 625
C C+C Y C ++ P C + C C+ G G
Sbjct: 574 CR----CNVCECHSGYQLPLC---QECPGCPSPCGKYISCAEC------LKFEKGPFGKN 620
Query: 626 CSERVSCAHF---CFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTLVHYI 675
CS G TC+E++ C Y + + Y+
Sbjct: 621 CSAACPGLQLSNNPVKGRTCKERD---------SEGCWVAYTLEQQDGMDRYL 664
|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-22
Identities = 65/385 (16%), Positives = 95/385 (24%), Gaps = 54/385 (14%)
Query: 262 CKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTC 321
K++ + L ++ C + +T ++ T + C
Sbjct: 339 NKLSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATEC 398
Query: 322 EFDDDFDPHCICQENFYGTYCEKVNNS-MCPCLNQGMCYPDLTHPEP--TYKCHCAPSYT 378
+ F I F +V C C +Q C C Y
Sbjct: 399 IQEQSF---VIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYI 455
Query: 379 GARCESRICENKC-HNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLE 437
G CE + G+C + +C G C QCL C V G
Sbjct: 456 GKNCECQTQGRSSQELEGSCRKDNNSIICS-GLGDCVCGQCL---CHTSDVPGKLIYGQY 511
Query: 438 CDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKC 497
C+C NC+ + G KC C PG+ G C G C
Sbjct: 512 CECDTI----NCERYNGQVCGGPGRGLCFCG--KCRCHPGFEGSACQCERTTEG-----C 560
Query: 498 MCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTP 557
+ C G C NVC+C S Y C+ P
Sbjct: 561 LNP--------RRVECSGRGRCR----CNVCECHSGYQLPLCQ-----------ECPGCP 597
Query: 558 NYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTC 617
+ C +C K GK C+ N C C
Sbjct: 598 SPCGKYISCA-----ECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDS----EGC 648
Query: 618 VNGWSGITCSERVSCAHFCFNGGTC 642
++ + C
Sbjct: 649 WVAYTLEQQDGMDRYLIYVDESREC 673
|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687 | Back alignment and structure |
|---|
Score = 95.2 bits (236), Expect = 2e-20
Identities = 53/289 (18%), Positives = 78/289 (26%), Gaps = 37/289 (12%)
Query: 398 IATTQTCVCPPGFTGDTCQ--QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQ-- 453
+ T C G T C ++ K T EC + + + ++
Sbjct: 356 LKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIV 415
Query: 454 CKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSG-------- 505
EC D G +C C C G G C C
Sbjct: 416 TVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSC 475
Query: 506 -KKCDTCTCLNGGTCIPN--SKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSN 562
K ++ C G C+ + G+ CEC + C
Sbjct: 476 RKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCER------YNGQVCGG 529
Query: 563 NGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKP-VCTCVNGW 621
G + GK C+C P + G C + C CS + + VC C +G+
Sbjct: 530 PGRGLCFCGK--CRCHPGFEGSACQCERTTEGC--LNPRRVECSGRGRCRCNVCECHSGY 585
Query: 622 SGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQT 670
C E C C +C E +G G C
Sbjct: 586 QLPLCQECPGCPSPCGKYISCAE-----------CLKFEKGPFGKNCSA 623
|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687 | Back alignment and structure |
|---|
Score = 89.4 bits (221), Expect = 1e-18
Identities = 56/380 (14%), Positives = 88/380 (23%), Gaps = 53/380 (13%)
Query: 228 CHQSALCINLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLC 287
+AL L ++ C + +T ++ T + + +
Sbjct: 347 LDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVI 406
Query: 288 PDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDP-HCICQENFYGTYCEKVN 346
++ C R + C + C C + G CE
Sbjct: 407 RALGFTDIVTVQVLPQC---ECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQT 463
Query: 347 NSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVC 406
+G C D C +C CH C
Sbjct: 464 QGRSSQELEGSCRKDNNSII----CSGLGDCVCGQCL-------CHTSDVPGKLIYGQYC 512
Query: 407 PPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSIT 466
G+C C C + G CQ + C+N
Sbjct: 513 ECDTINCERYNGQVCGGPGRGLCFCGK----CRCHPGFEGSACQCERTTEGCLNPRRVEC 568
Query: 467 DSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNN 526
+C +C+ C C +G P C PG C +C
Sbjct: 569 SGRGRC---------RCNVCECHSGYQLPLCQECPGCPSP------CGKYISCA-----E 608
Query: 527 VCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQC 586
K G+ C A N TC + S C Y+ +Q
Sbjct: 609 CLKFEKGPFGKNCSAAC--------PGLQLSNNPVKGRTCK---ERDSEGCWVAYTLEQQ 657
Query: 587 TEREDSPSCHNYCDNAGLCS 606
+ Y D + C
Sbjct: 658 ---DGMDRYLIYVDESRECV 674
|
| >2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 4e-25
Identities = 43/176 (24%), Positives = 60/176 (34%), Gaps = 22/176 (12%)
Query: 316 CNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAP 375
+HG+ E C + +YG C K C + C
Sbjct: 8 HHHGSIEGRS----AVTCDDYYYGFGCNKFCRPRDDFFGHYAC-------DQNGNKTCME 56
Query: 376 SYTGARCESRICENKCH-NGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTT 434
+ G C IC C G+C C C G+ G C +C+ G+C
Sbjct: 57 GWMGPECNRAICRQGCSPKHGSCKLP-GDCRCQYGWQGLYCDKCIPHPGCVHGICNE--- 112
Query: 435 GLECDCPKFYYGKNCQ----YSQCKNYCVN-GECSITDSGP-KCMCSPGYSGKKCD 484
+C C + G+ C Y C+N G CS T +C C GYSG C+
Sbjct: 113 PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
|
| >2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 3e-22
Identities = 41/172 (23%), Positives = 62/172 (36%), Gaps = 24/172 (13%)
Query: 387 CENKCHNGGTCIATTQTCVCPPGFTGDTCQQ-CLNLKCQNGGVCVNKTTGLECDCPKFYY 445
+ H+ G+ + C + G C + C G ++ C + +
Sbjct: 3 GSHHHHHHGSIEGRS-AVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNG--NKTCMEGWM 59
Query: 446 GKNCQYSQCKNYC--VNGECSITDSGPKCMCSPGYSGKKCDTCTCLNG------DSGPKC 497
G C + C+ C +G C C C G+ G CD C G + +C
Sbjct: 60 GPECNRAICRQGCSPKHGSCK---LPGDCRCQYGWQGLYCDKCIPHPGCVHGICNEPWQC 116
Query: 498 MCSPGYSGKKCDT--------CTCLNGGTCIPNSKNN-VCKCPSQYTGRRCE 540
+C + G+ CD CLNGGTC + C CP Y+G CE
Sbjct: 117 LCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
|
| >2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 3e-20
Identities = 42/210 (20%), Positives = 65/210 (30%), Gaps = 43/210 (20%)
Query: 418 CLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPG 477
+ + G ++ C +YYG C G + +G C G
Sbjct: 2 RGSHHHHHHGSIEGRSA---VTCDDYYYGFGCNKFCRPRDDFFGHYACDQNG-NKTCMEG 57
Query: 478 YSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGR 537
+ G +C+ C G G+C C+C + G
Sbjct: 58 WMGPECNRAICRQG--------------------CSPKHGSCK---LPGDCRCQYGWQGL 94
Query: 538 RCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHN 597
C +KC P+ +G C C C + G+ C + + H
Sbjct: 95 YC-------------DKCIPHPGCVHGICN---EPWQCLCETNWGGQLCDKDLNYCGTHQ 138
Query: 598 YCDNAGLCSYSKQGKPVCTCVNGWSGITCS 627
C N G CS + K C+C G+SG C
Sbjct: 139 PCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
|
| >2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 5e-19
Identities = 40/183 (21%), Positives = 56/183 (30%), Gaps = 28/183 (15%)
Query: 274 CNHGNLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCIC 333
+HG++ C D+ C D G D + + C
Sbjct: 8 HHHGSIEGRSAVTCDDYYYGF--------GCNKFC---RPRDDFFGHYACDQNGN--KTC 54
Query: 334 QENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHN 393
E + G C + G C C C + G C+ I
Sbjct: 55 MEGWMGPECNRAICRQGCSPKHGSCKLP-------GDCRCQYGWQGLYCDKCIPHP-GCV 106
Query: 394 GGTCIATTQTCVCPPGFTGDTCQQCLN-----LKCQNGGVCVNKTTGL-ECDCPKFYYGK 447
G C C+C + G C + LN C NGG C N +C CP+ Y G
Sbjct: 107 HGICN-EPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGP 165
Query: 448 NCQ 450
NC+
Sbjct: 166 NCE 168
|
| >2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 2e-17
Identities = 42/196 (21%), Positives = 60/196 (30%), Gaps = 39/196 (19%)
Query: 483 CDTCTCLNG--DSGPKCMCSPGYSGKKCDT----CTCLNGGTCIPNSKNNVCKCPSQYTG 536
+G + C Y G C+ G +N C + G
Sbjct: 3 GSHHHHHHGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYA--CDQNGNKTCMEGWMG 60
Query: 537 RRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCH 596
C A+ C +G+C C+C + G C + P C
Sbjct: 61 PECNRAI-----------CRQGCSPKHGSCK---LPGDCRCQYGWQGLYCDKCIPHPGCV 106
Query: 597 NYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERV---SCAHFCFNGGTCREQNYSLDPDL 653
+ G+C+ Q C C W G C + + C NGGTC
Sbjct: 107 H-----GICNEPWQ----CLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTG-----PD 152
Query: 654 KPICICPRGYAGVRCQ 669
K C CP GY+G C+
Sbjct: 153 KYQCSCPEGYSGPNCE 168
|
| >2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 6e-13
Identities = 29/162 (17%), Positives = 43/162 (26%), Gaps = 35/162 (21%)
Query: 513 CLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGK 572
+ G+ + C Y G C C P G
Sbjct: 7 HHHHGSIE---GRSAVTCDDYYYGFGCN------------KFCRPRDDFFGHYACDQNG- 50
Query: 573 PSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSC 632
+ C+ + G +C C G C C C GW G+ C + +
Sbjct: 51 -NKTCMEGWMGPECNRAICRQGC---SPKHGSCKLP----GDCRCQYGWQGLYCDKCIP- 101
Query: 633 AHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTLVHY 674
H G C E C+C + G C ++Y
Sbjct: 102 -HPGCVHGICNEPWQ---------CLCETNWGGQLCDKDLNY 133
|
| >2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 3e-08
Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 19/115 (16%)
Query: 555 CTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPV 614
++ ++G+ EG+ + C Y G C + C +
Sbjct: 2 RGSHHHHHHGSI---EGRSAVTCDDYYYGFGCNKFCRPRDDFF---GHYACDQNGN---- 51
Query: 615 CTCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQ 669
TC+ GW G C+ + G+C+ C C G+ G+ C
Sbjct: 52 KTCMEGWMGPECNRAICRQGCSPKHGSCKLPGD---------CRCQYGWQGLYCD 97
|
| >2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 13/76 (17%)
Query: 595 CHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLK 654
++ + G TC + + G C++ F C +
Sbjct: 3 GSHHHHHHGSIEGRSA----VTCDDYYYGFGCNKFCRPRDDFFGHYACDQNG-------- 50
Query: 655 PICICPRGYAGVRCQT 670
C G+ G C
Sbjct: 51 -NKTCMEGWMGPECNR 65
|
| >2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423 | Back alignment and structure |
|---|
Score = 98.2 bits (244), Expect = 6e-22
Identities = 49/294 (16%), Positives = 80/294 (27%), Gaps = 50/294 (17%)
Query: 327 FDPHCICQENFYGTYCEKVNNSM-CPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESR 385
+ + + + + G + + C G C
Sbjct: 144 PRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFT--SAFTRLIVRRCEAQKWGPECNHL 201
Query: 386 ICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYY 445
C N G C T C+CPPGF G TC++ C +
Sbjct: 202 C--TACMNNGVCHEDTGECICPPGFMGRTCEK---------------------ACELHTF 238
Query: 446 GKNCQYS-QCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYS 504
G+ C+ + C + + D C C+ G+ G +C+ C G GP C
Sbjct: 239 GRTCKERCSGQEGCKSYVFCLPDPY-GCSCATGWKGLQCN-EACHPGFYGPDC------- 289
Query: 505 GKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNG 564
C+C NG C C C + G +CE + TP
Sbjct: 290 ---KLRCSCNNGEMCDRFQG---CLCSPGWQGLQCE--------REGIPRMTPKIVDLPD 335
Query: 565 TCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCV 618
+ GK + C E + +++ +
Sbjct: 336 HIEVNSGKFNPICKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTDHFSVAIFTI 389
|
| >2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423 | Back alignment and structure |
|---|
Score = 89.0 bits (220), Expect = 5e-19
Identities = 44/269 (16%), Positives = 71/269 (26%), Gaps = 35/269 (13%)
Query: 391 CHNGGTCIATTQTCVCPPGFTGDTCQ-----QCLNLKCQNGGVCVNKTTGLEC--DCPKF 443
+ G+ I + P + GG C
Sbjct: 133 IYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQ 192
Query: 444 YYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGY 503
+G C + C+N D+G +C+C PG+ G+ C+ C
Sbjct: 193 KWGPEC--NHLCTACMNNGVCHEDTG-ECICPPGFMGRTCEKA------------CELHT 237
Query: 504 SGKKCDTC-----TCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPN 558
G+ C C + C+P+ C C + + G +C A +
Sbjct: 238 FGRTCKERCSGQEGCKSYVFCLPDP--YGCSCATGWKGLQCNEACHP--GFYGPDCKLRC 293
Query: 559 YCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCV 618
C+N C +G C C P + G QC D +
Sbjct: 294 SCNNGEMCDRFQG---CLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKA 350
Query: 619 NGWSGITCSER-VSCAHFCFNGGTCREQN 646
+GW T E +
Sbjct: 351 SGWPLPTNEEMTLVKPDGTVLHPKDFNHT 379
|
| >2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 8e-11
Identities = 39/215 (18%), Positives = 61/215 (28%), Gaps = 46/215 (21%)
Query: 474 CSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVC--KCP 531
G + P + GG ++ + +C
Sbjct: 134 YKNGSFIHSVPRHEVPDILEVHLPHAQPQDA---GVYSARYIGGNLFTSAFTRLIVRRCE 190
Query: 532 SQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTERED 591
+Q G C C NNG C G+ C C P + G+ C + +
Sbjct: 191 AQKWGPECNH--------------LCTACMNNGVCHEDTGE--CICPPGFMGRTCEKACE 234
Query: 592 S----PSCHNYCDNAGLCSYSKQGKPV---CTCVNGWSGITCSERVSCAHF--------- 635
+C C C P C+C GW G+ C+E +
Sbjct: 235 LHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCS 294
Query: 636 CFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQT 670
C NG C C+C G+ G++C+
Sbjct: 295 CNNGEMCDRFQ---------GCLCSPGWQGLQCER 320
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 90.6 bits (224), Expect = 5e-20
Identities = 17/178 (9%), Positives = 50/178 (28%), Gaps = 16/178 (8%)
Query: 20 TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIAL 79
+ + + + Y+ + + + + + + +P +
Sbjct: 139 EEKKKIKNHYLFTCNTSDRYFYYNNPK---NGQLYRYDTASQSEALFYDCNCYKPVVLD- 194
Query: 80 EPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKART 139
+++ ++ I +I+ N L + NI+ Y S Y
Sbjct: 195 ---DTNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHYNV----YGSLIFYQRGGDNPA 247
Query: 140 IESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVL 197
+ + +G + + + V +YF+ + +N + L
Sbjct: 248 LCVVKNDGTGFKELAKG-----EFCNINVTSQYVYFTDFVSNKEYCTSTQNPDTIKAL 300
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 9e-09
Identities = 20/191 (10%), Positives = 64/191 (33%), Gaps = 17/191 (8%)
Query: 20 TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG-----LNEP 74
+ + L + + ++ +Y+ + + + + + G L+
Sbjct: 47 SNIHKLSNDTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD 106
Query: 75 YDIALEPLSGRMFWTEL--GIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYW 132
I + +++ + IDG+ K + ++ + T + + Y+
Sbjct: 107 PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL-----FTCNTSDRYFYY 161
Query: 133 ADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNN-ILKINKFGN 191
+PK + + + + Y + + + + N+Y+ +N I+ +N
Sbjct: 162 NNPKNGQLYRYDTASQSEALFY----DCNCYKPVVLDDTNVYYMDVNRDNAIVHVNINNP 217
Query: 192 SDFNVLANNLN 202
+ + N+
Sbjct: 218 NPVVLTEANIE 228
|
| >2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 1e-19
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 351 PCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICE---NKCHNGGTCIATTQ--TCV 405
PC + G C + +++C C YTG RCE + E N C N TC+ C+
Sbjct: 14 PCEHAGKC----INTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCI 69
Query: 406 CPPGFTGDTCQQ----CLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNG 461
C PG+ G C+ C + C + G C++K +C+CP + G CQ ++ ++
Sbjct: 70 CMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVD--LHHILDA 127
Query: 462 EC 463
+
Sbjct: 128 QK 129
|
| >2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 4e-14
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 16/107 (14%)
Query: 487 TCLNGDSGPKCMCSPGYSGKKCDT----CT---CLNGGTCIPNSKNNVCKCPSQYTGRRC 539
C+N +C C GY+G +C+ C C N TC+ C C Y G C
Sbjct: 20 KCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHC 79
Query: 540 ECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQC 586
E ++C + C +NG C+ + C+C ++G C
Sbjct: 80 EVNT---------DECASSPCLHNGRCLDKINEFQCECPTGFTGHLC 117
|
| >2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 1e-12
Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 30/135 (22%)
Query: 449 CQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDT----C---------TCLNGDSGP 495
+ C++ G+C T +C C GY+G +C+ C TCL+
Sbjct: 10 LGANPCEH---AGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEF 66
Query: 496 KCMCSPGYSGKKCDT----CT---CLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSC 548
+C+C PGY G C+ C CL+ G C+ C+CP+ +TG C+ +
Sbjct: 67 QCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHH--I 124
Query: 549 ASLANKCTPNYCSNN 563
N+
Sbjct: 125 LD-----AQKMVWNH 134
|
| >2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-12
Identities = 39/132 (29%), Positives = 54/132 (40%), Gaps = 17/132 (12%)
Query: 513 CLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGK 572
C + G CI + C+C YTG RCE V N+C N C N+ TC+ G+
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGPRCEIDV---------NECVSNPCQNDATCLDQIGE 65
Query: 573 PSCKCLPPYSGKQCTEREDSPSCHNY-CDNAGLCSYSKQGKPVCTCVNGWSGITCSERVS 631
C C+P Y G C D C + C + G C K + C C G++G C +
Sbjct: 66 FQCICMPGYEGVHCEVNTD--ECASSPCLHNGRC-LDKINEFQCECPTGFTGHLCQVDLH 122
Query: 632 -CAH---FCFNG 639
+N
Sbjct: 123 HILDAQKMVWNH 134
|
| >2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-10
Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 16/121 (13%)
Query: 555 CTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCH-NYCDNAGLCSYSKQGKP 613
N C + G C+ G C+CL Y+G +C + C N C N C + G+
Sbjct: 10 LGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVN--ECVSNPCQNDATCL-DQIGEF 66
Query: 614 VCTCVNGWSGITCSERVS-CAHF-CFNGGTCREQ--NYSLDPDLKPICICPRGYAGVRCQ 669
C C+ G+ G+ C CA C + G C ++ + C CP G+ G CQ
Sbjct: 67 QCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQ--------CECPTGFTGHLCQ 118
Query: 670 T 670
Sbjct: 119 V 119
|
| >4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 8e-19
Identities = 42/138 (30%), Positives = 57/138 (41%), Gaps = 32/138 (23%)
Query: 351 PCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICE---------------NKCHNGG 395
PC N G+C P L + ++ C C +T C S + N CHNGG
Sbjct: 7 PCENGGICLPGL--ADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGG 64
Query: 396 TCIATTQ---------TCVCPPGFTGDTCQQ----CLNLKCQNGGVCVNKTTGLECDCPK 442
TC + C CP GF G CQ C C+NGG+C + C+CP
Sbjct: 65 TCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPG 124
Query: 443 FYYGKNCQY--SQCKNYC 458
+ G+NCQY ++
Sbjct: 125 EFMGRNCQYKGGGHHHHH 142
|
| >4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 5e-15
Identities = 36/159 (22%), Positives = 54/159 (33%), Gaps = 27/159 (16%)
Query: 449 CQYSQCKNYCVNGEC--SITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGK 506
C + C+N G C + D C C G++ C + S
Sbjct: 3 CDPNPCEN---GGICLPGLADGSFSCECPDGFTDPNCSS------VVEVASDEEEPTSAG 53
Query: 507 KCDTCTCLNGGTCIPNSKNNV-------CKCPSQYTGRRCECAVGDTSCASLANKCTPNY 559
C C NGGTC + CKCP + G C+ + N+C
Sbjct: 54 PCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNI---------NECEVEP 104
Query: 560 CSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNY 598
C N G C + SC+C + G+ C + H++
Sbjct: 105 CKNGGICTDLVANYSCECPGEFMGRNCQYKGGGHHHHHH 143
|
| >4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 6e-14
Identities = 48/172 (27%), Positives = 60/172 (34%), Gaps = 50/172 (29%)
Query: 508 CDTCTCLNGGTCIPNSKNN--VCKCPSQYTGRRCECAV---GDTSCASLANKCTPNYCSN 562
CD C NGG C+P + C+CP +T C V D + A CTPN C N
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62
Query: 563 NGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWS 622
GTC + E Y C C G++
Sbjct: 63 GGTCEISEAY---------------------------RGDTFIGYV------CKCPRGFN 89
Query: 623 GITCSERVS-CAHF-CFNGGTCREQ--NYSLDPDLKPICICPRGYAGVRCQT 670
GI C ++ C C NGG C + NYS C CP + G CQ
Sbjct: 90 GIHCQHNINECEVEPCKNGGICTDLVANYS--------CECPGEFMGRNCQY 133
|
| >4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 2e-13
Identities = 34/132 (25%), Positives = 40/132 (30%), Gaps = 24/132 (18%)
Query: 317 NHGTC-EFDDDFDPHCICQENFYGTYCEKVNNSMC--------------PCLNQGMCYPD 361
N G C D C C + F C V PC N G C
Sbjct: 10 NGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEIS 69
Query: 362 LTHPEPT---YKCHCAPSYTGARCESRICE---NKCHNGGTCIATTQ--TCVCPPGFTGD 413
+ T Y C C + G C+ I E C NGG C +C CP F G
Sbjct: 70 EAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGR 129
Query: 414 TCQQCLNLKCQN 425
CQ +
Sbjct: 130 NCQYKGGG-HHH 140
|
| >4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 4e-12
Identities = 32/155 (20%), Positives = 40/155 (25%), Gaps = 60/155 (38%)
Query: 389 NKCHNGGTCIATTQ----TCVCPPGFTGDTCQQ----------------CLNLKCQNGGV 428
N C NGG C+ +C CP GFT C C C NGG
Sbjct: 6 NPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGT 65
Query: 429 CVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDT--- 485
C T G C C G++G C
Sbjct: 66 CEIS---------------------------EAYRGDTFIGYVCKCPRGFNGIHCQHNIN 98
Query: 486 ------C----TCLNGDSGPKCMCSPGYSGKKCDT 510
C C + + C C + G+ C
Sbjct: 99 ECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQY 133
|
| >4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 6e-04
Identities = 40/182 (21%), Positives = 58/182 (31%), Gaps = 51/182 (28%)
Query: 222 HCDDKPCHQSALCINL--PSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNL 279
CD PC +C+ S +C CPD T+ N +S T C
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDP-NCSSVVEVASDEEEPTSAGPC----- 55
Query: 280 PSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPH------CIC 333
+ + C N GTCE + + C C
Sbjct: 56 -TPNPCH------------------------------NGGTCEISEAYRGDTFIGYVCKC 84
Query: 334 QENFYGTYCEKVNN--SMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKC 391
F G +C+ N + PC N G+C DL Y C C + G C+ + +
Sbjct: 85 PRGFNGIHCQHNINECEVEPCKNGGICT-DLVA---NYSCECPGEFMGRNCQYKGGGHHH 140
Query: 392 HN 393
H+
Sbjct: 141 HH 142
|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690 | Back alignment and structure |
|---|
Score = 85.9 bits (212), Expect = 1e-17
Identities = 52/337 (15%), Positives = 90/337 (26%), Gaps = 61/337 (18%)
Query: 275 NHGNLPSSHTCLCPDHLTE-ELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCIC 333
N+ +P +C+ ++ + C ++ + C C
Sbjct: 376 NNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDC 435
Query: 334 QENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENK--- 390
C+ N G + C C P + G++CE + +
Sbjct: 436 A-------CQAQAEPNSHRCNNGNGTFE------CGVCRCGPGWLGSQCECSEEDYRPSQ 482
Query: 391 ------------CHNGGTCIATTQTCVCPPGFTGDTCQQ-----------CLNLKCQNGG 427
C G C+ CVC G + C G
Sbjct: 483 QDECSPREGQPVCSQRGECL--CGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHG 540
Query: 428 VCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMC------SPGYSGK 481
C C C + G C + + C++ + KC C PG G
Sbjct: 541 QCSCGD----CLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGD 596
Query: 482 KCDTC-TCLNGDSGPK--CMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRR 538
C+ C TC + + K C G D TC C ++ +
Sbjct: 597 TCEKCPTCPDACTFKKECVECKKFDRGALHDENTC--NRYCRDEIESVKELKDTGKDAVN 654
Query: 539 CECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSC 575
C + C + S+ + + + +P C
Sbjct: 655 CTY-KNEDDCVV---RFQYYEDSSGKSILYVVEEPEC 687
|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690 | Back alignment and structure |
|---|
Score = 84.8 bits (209), Expect = 4e-17
Identities = 61/376 (16%), Positives = 95/376 (25%), Gaps = 90/376 (23%)
Query: 281 SSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYGT 340
S L L EEL+++ +C C F +
Sbjct: 352 RSKVELEVRDLPEELSLSF-NATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRG----- 405
Query: 341 YCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGTCIAT 400
C + G D + T+ C CA + GT
Sbjct: 406 -CPQEKEKSFTIKPVGFK--DSLIVQVTFDCDCACQAQAEPN----SHRCNNGNGTFE-- 456
Query: 401 TQTCVCPPGFTGDTCQ----------------QCLNLKCQNGGVCVNKTTGLECDCPKFY 444
C C PG+ G C+ + C G C+ +C C
Sbjct: 457 CGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCG----QCVCHSSD 512
Query: 445 YGKNC-QYSQCKNYCVNGECSITDSG------PKCMCSPGYSGKKCDTCTCLNGDSGPKC 497
+GK +Y +C ++ SG C+C ++G C+ T + C
Sbjct: 513 FGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDT-----C 567
Query: 498 MCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKC-PSQYTGRRCECAVGDTSCASLANKCT 556
M S G C G C C C G CE
Sbjct: 568 MSSNG--------LLCSGRGKCE----CGSCVCIQPGSYGDTCEK-----------CPTC 604
Query: 557 PNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCT 616
P+ C+ C +C G E + C + ++
Sbjct: 605 PDACTFKKEC--------VECKKFDRGALHDENTCNRYCRDEIES-----------VKEL 645
Query: 617 CVNGWSGITCSERVSC 632
G + C+ +
Sbjct: 646 KDTGKDAVNCTYKNED 661
|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690 | Back alignment and structure |
|---|
Score = 84.4 bits (208), Expect = 4e-17
Identities = 51/300 (17%), Positives = 76/300 (25%), Gaps = 64/300 (21%)
Query: 398 IATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNY 457
++ + C + C+ LK + + C K +
Sbjct: 366 LSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSL 425
Query: 458 CVNG--ECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCD------ 509
V +C S + C C PG+ G +C+
Sbjct: 426 IVQVTFDCDCACQAQAEPNSHRCNNGNGTFECG-------VCRCGPGWLGSQCECSEEDY 478
Query: 510 -------------TCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE--CAVGDTSCASLANK 554
C G C+ C C S G+ C D SC +
Sbjct: 479 RPSQQDECSPREGQPVCSQRGECL----CGQCVCHSSDFGKITGKYCECDDFSC----VR 530
Query: 555 CTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPV 614
CS +G C C C ++G C + +C N LC S +GK
Sbjct: 531 YKGEMCSGHGQCS----CGDCLCDSDWTGYYCNCTTRTDTCM--SSNGLLC--SGRGKCE 582
Query: 615 C----TCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQT 670
C G G TC + +C C C C + G
Sbjct: 583 CGSCVCIQPGSYGDTCEKCPTCPDACTFKKEC--------------VECKKFDRGALHDE 628
|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690 | Back alignment and structure |
|---|
Score = 80.9 bits (199), Expect = 6e-16
Identities = 51/285 (17%), Positives = 70/285 (24%), Gaps = 57/285 (20%)
Query: 234 CINLPSSHTCLCPDHLTEELNVTSGKM---SCKVAPARTCYLDCNHGNLPSSHTCLCPDH 290
C + P + L V +C+ + N C C
Sbjct: 406 CPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPG 465
Query: 291 LT----EELNVTSGKMSCKVAPARTCYLDC-NHGTCEFDDDFDPHCICQENFYGTYCEK- 344
E R C G C C+C + +G K
Sbjct: 466 WLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECL-----CGQCVCHSSDFGKITGKY 520
Query: 345 --------VNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICEN------- 389
V C G C C C +TG C +
Sbjct: 521 CECDDFSCVRYKGEMCSGHGQCS--------CGDCLCDSDWTGYYCNCTTRTDTCMSSNG 572
Query: 390 -KCHNGGTCIATTQTCVCPPGFTGDTCQQCLN--LKCQNGGVCVNKTTGLECDCPKFYYG 446
C G C + C PG GDTC++C C C +C KF G
Sbjct: 573 LLCSGRGKCECGSCVC-IQPGSYGDTCEKCPTCPDACTFKKEC--------VECKKFDRG 623
Query: 447 KNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKC---DTCTC 488
+ C YC + S+ K + G C + C
Sbjct: 624 ALHDENTCNRYCRDEIESV-----KELKDTGKDAVNCTYKNEDDC 663
|
| >1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 4e-17
Identities = 25/203 (12%), Positives = 44/203 (21%), Gaps = 43/203 (21%)
Query: 351 PCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICE---NKCHNGGTCIATTQ--TCV 405
C+ + Y + + + + C N G C TC
Sbjct: 11 ECMEETCSYEEAR----EVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCT 66
Query: 406 CPPGFTGDTCQQ-----CLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVN 460
C GF G C+ C C + + C C + Y + +
Sbjct: 67 CLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC--IPTGP 124
Query: 461 GECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKK--------CDTCT 512
C S + S G + D
Sbjct: 125 YPCG-------------------KQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDP 165
Query: 513 CLNGGTCIPNSKNNVCKCPSQYT 535
N + ++ + + T
Sbjct: 166 TENPFDLLDFNQTQPERGDNNLT 188
|
| >1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 1e-15
Identities = 24/162 (14%), Positives = 41/162 (25%), Gaps = 19/162 (11%)
Query: 315 DCNHGTCEFDDDFDPHCICQENFYGTYCEKVNN--SMCPCLNQGMCYPDLTHPEPTYKCH 372
+C TC +++ + + K + PC NQG C L Y C
Sbjct: 11 ECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLG----EYTCT 66
Query: 373 CAPSYTGARCESRICE----NKCHNGGTCIATTQ--TCVCPPGFTGDTCQQ----CLNLK 422
C + G CE + + C C C G+T +
Sbjct: 67 CLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYP 126
Query: 423 CQNGGVCVNKTTGLECDCPK-FYYGKNCQYSQCKNYCVNGEC 463
C + K + + + +
Sbjct: 127 CGKQTLERRKRSVAQATSSSGEAPDSITW--KPYDAADLDPT 166
|
| >1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 2e-14
Identities = 29/201 (14%), Positives = 44/201 (21%), Gaps = 41/201 (20%)
Query: 412 GDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQY-------SQCKNYCVNGECS 464
G ++C+ C + D K N S C+N G+C
Sbjct: 6 GHLERECMEETCSYEEAR-----EVFEDSDKTNEFWNKYKDGDQCETSPCQN---QGKCK 57
Query: 465 ITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSK 524
C C G+ GK C+ + C C
Sbjct: 58 DGLGEYTCTCLEGFEGKNCEL------FTRKLCSLDN-----------GDCDQFCHEEQN 100
Query: 525 NNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGK 584
+ VC C YT A P C +
Sbjct: 101 SVVCSCARGYTLADNGKAC---------IPTGPYPCGKQTLERRKRSVAQATSSSGEAPD 151
Query: 585 QCTEREDSPSCHNYCDNAGLC 605
T + + + +N
Sbjct: 152 SITWKPYDAADLDPTENPFDL 172
|
| >1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 8e-13
Identities = 24/170 (14%), Positives = 40/170 (23%), Gaps = 20/170 (11%)
Query: 487 TCLNGDSGPKCMCSPGYSGKKC----DTCT---CLNGGTCIPNSKNNVCKCPSQYTGRRC 539
D C C N G C C C + G+ C
Sbjct: 17 CSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNC 76
Query: 540 ECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYC 599
E C+ + + C + C C Y+ + P+ C
Sbjct: 77 ELFTRKL--------CSLDNGDCDQFCHEEQNSVVCSCARGYTLADN-GKACIPTGPYPC 127
Query: 600 DNAGLCSYSKQGKPVCTCVNGWSGITCSERVS--CAHF-CFNGGTCREQN 646
L K+ T +G + + + + N + N
Sbjct: 128 GKQTLE-RRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFN 176
|
| >1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 9e-12
Identities = 24/158 (15%), Positives = 41/158 (25%), Gaps = 18/158 (11%)
Query: 513 CLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGK 572
C+ ++ ++C + C N G C G+
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDG---------DQCETSPCQNQGKCKDGLGE 62
Query: 573 PSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERV-S 631
+C CL + GK C + D C +Q VC+C G++ +
Sbjct: 63 YTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKACIP 121
Query: 632 CAHF-CFNGGTCREQNYSLDPDLKPICICPRGYAGVRC 668
+ C R + G A
Sbjct: 122 TGPYPCGKQTLERRKRSV------AQATSSSGEAPDSI 153
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 13/179 (7%)
Query: 14 REMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNE 73
+E+NL + P G+ V G ++ T N I L+G+ L T +
Sbjct: 6 QELNLTNQDTG---PYGITVSDKG-KVWITQHKA---NMISCINLDGKITEYPLPTPDAK 58
Query: 74 PYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWA 133
+ + G +++TE +I + G K + N P GIT P+ +++
Sbjct: 59 VMCLTISS-DGEVWFTENA-ANKIGRITKKGIIKEYTLPNPDSAPYGITEG-PNGDIWFT 115
Query: 134 DPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEV-FEDNLYFSTYRTNNILKINKFGN 191
+ I I +GK Y + G P + + ++ L+F+ + N I +I + G+
Sbjct: 116 EMNGNRIGRITDDGK--IREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITESGD 172
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 5e-14
Identities = 26/187 (13%), Positives = 60/187 (32%), Gaps = 17/187 (9%)
Query: 5 SSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKR 64
G + + + P + + L++T+ +N I T G
Sbjct: 127 DDGKIREY-------ELPNKGSYPSFITLGSDN-ALWFTENQ---NNAIGRITESGDITE 175
Query: 65 TLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITID 124
+ T + P I +++ E+ +I + G+ + P IT
Sbjct: 176 FKIPTPASGPVGITKGN-DDALWFVEII-GNKIGRITTSGEITEFKIPTPNARPHAITAG 233
Query: 125 YPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNIL 184
L++ + A I + N Y + +P+ + + ++F+ + I
Sbjct: 234 -AGIDLWFTEWGANKIGRLTSNNI--IEEYPIQIKSAEPHGICFDGETIWFAME-CDKIG 289
Query: 185 KINKFGN 191
K+ +
Sbjct: 290 KLTLIKD 296
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 6/153 (3%)
Query: 58 LEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQW 117
+E + + L PY I + G+++ T+ IS ++DGK +
Sbjct: 1 MEFKLQELNLTNQDTGPYGITVSD-KGKVWITQHK-ANMISCINLDGKITEYPLPTPDAK 58
Query: 118 PTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEV-FEDNLYFS 176
+TI +++ + A I I G Y + PY + +++F+
Sbjct: 59 VMCLTIS-SDGEVWFTENAANKIGRITKKGI--IKEYTLPNPDSAPYGITEGPNGDIWFT 115
Query: 177 TYRTNNILKINKFGNSDFNVLANNLNRASDVLI 209
N I +I G L N + S + +
Sbjct: 116 EMNGNRIGRITDDGKIREYELPNKGSYPSFITL 148
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 40/188 (21%), Positives = 69/188 (36%), Gaps = 17/188 (9%)
Query: 5 SSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKR 64
SG + V + + V +G ++++T+ G N I + +G
Sbjct: 48 QSGRIKEF-------EVPTPDAKVMCLIVSSLG-DIWFTENGA---NKIGKLSKKGGFTE 96
Query: 65 TLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITID 124
L + PY I +G +++T+L RI + DG + N +P IT+
Sbjct: 97 YPLPQPDSGPYGITEGL-NGDIWFTQLN-GDRIGKLTADGTIYEYDLPNKGSYPAFITLG 154
Query: 125 YPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFED-NLYFSTYRTNNI 183
L++ + + +I I GK Y N P + D L+F N I
Sbjct: 155 -SDNALWFTENQNNSIGRITNTGK--LEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKI 211
Query: 184 LKINKFGN 191
+I G
Sbjct: 212 GRITTTGE 219
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 3e-15
Identities = 37/179 (20%), Positives = 64/179 (35%), Gaps = 13/179 (7%)
Query: 14 REMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNE 73
E NL S P G+ G +++T N I GR K + T +
Sbjct: 11 EEFNLSIPDSG---PYGITSSEDG-KVWFTQHKA---NKISSLDQSGRIKEFEVPTPDAK 63
Query: 74 PYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWA 133
+ + G +++TE G +I S G + P GIT + +++
Sbjct: 64 VMCLIVSS-LGDIWFTENG-ANKIGKLSKKGGFTEYPLPQPDSGPYGITEG-LNGDIWFT 120
Query: 134 DPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFED-NLYFSTYRTNNILKINKFGN 191
I + +G Y + G P + + D L+F+ + N+I +I G
Sbjct: 121 QLNGDRIGKLTADG--TIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGK 177
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 7e-15
Identities = 36/188 (19%), Positives = 64/188 (34%), Gaps = 17/188 (9%)
Query: 5 SSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKR 64
G T L S P G+ G ++++T G + I T +G
Sbjct: 90 KKGGFTEYP----LPQPDSG---PYGITEGLNG-DIWFTQLNG---DRIGKLTADGTIYE 138
Query: 65 TLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITID 124
L + P I L +++TE I + GK + + N P GIT
Sbjct: 139 YDLPNKGSYPAFITLGS-DNALWFTENQ-NNSIGRITNTGKLEEYPLPTNAAAPVGITSG 196
Query: 125 YPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFED-NLYFSTYRTNNI 183
L++ + I I G+ Y +P+ + ++ ++F+ + N I
Sbjct: 197 -NDGALWFVEIMGNKIGRITTTGE--ISEYDIPTPNARPHAITAGKNSEIWFTEWGANQI 253
Query: 184 LKINKFGN 191
+I
Sbjct: 254 GRITNDNT 261
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 2 ASISSGNVTRVKREMNLKTVL--SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE 59
I + R+ + + P + +++T+ G +N I T +
Sbjct: 204 VEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNS-EIWFTEWG---ANQIGRITND 259
Query: 60 GRKKRTLLNTGLNEPYDIALEPLSGRMFWTELG 92
+ L T EP+ I G +++
Sbjct: 260 NTIQEYQLQTENAEPHGITFGK-DGSVWFALKC 291
|
| >2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 3e-15
Identities = 23/127 (18%), Positives = 36/127 (28%), Gaps = 16/127 (12%)
Query: 315 DCNHGTCEFDDDFDPHCICQENFYGTYCEKVNN--SMCPCLNQGMCYPDLTHPEPTYKCH 372
+C TC +++ + + K + PC NQG C L Y C
Sbjct: 11 ECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLG----EYTCT 66
Query: 373 CAPSYTGARCESRICE----NKCHNGGTCIATTQ--TCVCPPGFTGDTCQQ----CLNLK 422
C + G CE + + C C C G+T +
Sbjct: 67 CLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYP 126
Query: 423 CQNGGVC 429
C +
Sbjct: 127 CGKQTLE 133
|
| >2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 6e-14
Identities = 23/146 (15%), Positives = 34/146 (23%), Gaps = 33/146 (22%)
Query: 387 CENKCHNGGTCIATTQ--TCVCPPGFTGDTCQ----QCLNLKCQNGGVCVNKTTGLECDC 440
E +C + QC CQN G C + C C
Sbjct: 8 LERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTC 67
Query: 441 PKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCS 500
+ + GKNC+ + C G + C + C C+
Sbjct: 68 LEGFEGKNCE---------------LFTRKLCSLDNGDCDQ-----FCHEEQNSVVCSCA 107
Query: 501 PGYSGKKCDT-------CTCLNGGTC 519
GY+ C
Sbjct: 108 RGYTLADNGKACIPTGPYPCGKQTLE 133
|
| >2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 4e-13
Identities = 22/133 (16%), Positives = 39/133 (29%), Gaps = 12/133 (9%)
Query: 513 CLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGK 572
C+ ++ ++C + C N G C G+
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDG---------DQCETSPCQNQGKCKDGLGE 62
Query: 573 PSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVS- 631
+C CL + GK C + D C + +Q VC+C G++ +
Sbjct: 63 YTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFC-HEEQNSVVCSCARGYTLADNGKACIP 121
Query: 632 CAHF-CFNGGTCR 643
+ C R
Sbjct: 122 TGPYPCGKQTLER 134
|
| >2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 4e-12
Identities = 26/161 (16%), Positives = 37/161 (22%), Gaps = 36/161 (22%)
Query: 413 DTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQY-------SQCKNYCVNGECSI 465
+ + L +C + + D K N S C+N G+C
Sbjct: 2 EMKKGHLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQN---QGKCKD 58
Query: 466 TDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKN 525
C C G+ GK C+ + C C +
Sbjct: 59 GLGEYTCTCLEGFEGKNCEL------FTRKLCSLDN-----------GDCDQFCHEEQNS 101
Query: 526 NVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTC 566
VC C YT A P C
Sbjct: 102 VVCSCARGYTLADNGKAC---------IPTGPYPCGKQTLE 133
|
| >2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 6e-12
Identities = 18/126 (14%), Positives = 27/126 (21%), Gaps = 16/126 (12%)
Query: 487 TCLNGDSGPKCMCSPGYSGKKCDT----CT---CLNGGTCIPNSKNNVCKCPSQYTGRRC 539
C C N G C C C + G+ C
Sbjct: 17 CSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNC 76
Query: 540 ECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYC 599
E C+ + + C + C C Y+ + P+ C
Sbjct: 77 ELFTRKL--------CSLDNGDCDQFCHEEQNSVVCSCARGYTLADN-GKACIPTGPYPC 127
Query: 600 DNAGLC 605
L
Sbjct: 128 GKQTLE 133
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 7e-15
Identities = 38/186 (20%), Positives = 72/186 (38%), Gaps = 11/186 (5%)
Query: 23 SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPL 82
+ L+ P+G+AVD G +Y TD N ++ + L GLN P +A++
Sbjct: 64 NGLYQPQGLAVDGAG-TVYVTDFN----NRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT- 117
Query: 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIES 142
G ++ + G R+ + K + L + P G+ +D S +Y D +
Sbjct: 118 QGAVYVADRG-NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGNVYVTDTDNNRVVK 175
Query: 143 INLNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLANNL 201
+ V + P+ + V +Y + + TN ++K+ + + L
Sbjct: 176 LEAESN--NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGL 233
Query: 202 NRASDV 207
N V
Sbjct: 234 NTPLAV 239
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 5e-12
Identities = 37/186 (19%), Positives = 74/186 (39%), Gaps = 14/186 (7%)
Query: 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNN--IMVSTLEGRKKRTLLNTGLNEPYDIALEPL 82
P GVAVD G N+Y T ++ L GL +P +A++
Sbjct: 23 RLSPSGVAVDSAG-NVYVTS----EGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG- 76
Query: 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIES 142
+G ++ T+ + ++ A+ N+ L + + +P G+ +D +Y AD +
Sbjct: 77 AGTVYVTDFNNR-VVTLAA-GSNNQTVLPFDGLNYPEGLAVD-TQGAVYVADRGNNRVVK 133
Query: 143 INLNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLANNL 201
+ K + V+ T N P + V N+Y + N ++K+ N+ + ++
Sbjct: 134 LAAGSKTQTVLPFTGLND--PDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI 191
Query: 202 NRASDV 207
+
Sbjct: 192 TAPWGI 197
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 6e-12
Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 10/170 (5%)
Query: 23 SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPL 82
L+ P G+AVD G +Y D G +N ++ + + L TGLN+P +A++
Sbjct: 105 DGLNYPEGLAVDTQG-AVYVADRG---NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN- 159
Query: 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIES 142
SG ++ T+ R+ + N+ L +I P GI +D + +Y + +
Sbjct: 160 SGNVYVTDTDNN-RVVKLEAESNNQVVLPFTDITAPWGIAVD-EAGTVYVTEHNTNQVVK 217
Query: 143 INLNGKDRFVVYHTEDNGYKPYKLEVFED-NLYFSTYRTNNILKINKFGN 191
+ P + V D +Y + + ++K+ +
Sbjct: 218 LLAGST--TSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265
|
| >1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 4e-14
Identities = 25/130 (19%), Positives = 40/130 (30%), Gaps = 15/130 (11%)
Query: 316 CNHGTCEFDDDFDPHCICQENFYGTYCEKVNN--SMCPCLNQGMCYPDLTHPEPTYKCHC 373
C C F++ + ++ + PCLN G+C D+ +Y+C C
Sbjct: 18 CIEEKCSFEEAREVFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDIN----SYECWC 73
Query: 374 APSYTGARCESRICE---NKCHNGGTCIATTQ--TCVCPPGFTGDTCQQ----CLNLKCQ 424
+ G CE N C C G+ Q+ + C
Sbjct: 74 QVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPFPCG 133
Query: 425 NGGVCVNKTT 434
V + TT
Sbjct: 134 RVSVSHSPTT 143
|
| >1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-10
Identities = 29/140 (20%), Positives = 34/140 (24%), Gaps = 29/140 (20%)
Query: 388 ENKCHNGGTCIATTQTCVCPPGFTGDTCQ----QCLNLKCQNGGVCVNKTTGLECDCPKF 443
E KC QC C NGG+C + EC C
Sbjct: 20 EEKCSFEEAREVF---ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVG 76
Query: 444 YYGKNCQYSQ---CKNYCVNGECSIT-DSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMC 499
+ GKNC+ KN C DS C C+ GY C
Sbjct: 77 FEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQK------------SC 124
Query: 500 SPGYSGKKCDTCTCLNGGTC 519
P C
Sbjct: 125 KP------AVPFPCGRVSVS 138
|
| >1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-10
Identities = 20/121 (16%), Positives = 29/121 (23%), Gaps = 13/121 (10%)
Query: 528 CKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCT 587
+ ++C PN C N G C C C + GK C
Sbjct: 33 ENTEKTNEFWKQYVDG---------DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNC- 82
Query: 588 EREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERV-SCAHF-CFNGGTCREQ 645
D+ C K +C+C G+ + F C
Sbjct: 83 -ELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPFPCGRVSVSHSP 141
Query: 646 N 646
Sbjct: 142 T 142
|
| >1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-08
Identities = 21/116 (18%), Positives = 30/116 (25%), Gaps = 17/116 (14%)
Query: 497 CMCSPGYSGKKC----DTCT---CLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCA 549
K D C CLNGG C + + C C + G+ CE
Sbjct: 33 ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDA------ 86
Query: 550 SLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLC 605
N + K C C Y ++ P+ C +
Sbjct: 87 ---TCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPD-QKSCKPAVPFPCGRVSVS 138
|
| >3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426 | Back alignment and structure |
|---|
Score = 71.8 bits (175), Expect = 2e-13
Identities = 33/136 (24%), Positives = 47/136 (34%), Gaps = 12/136 (8%)
Query: 316 CNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPT-YKCHCA 374
H T D+ C C+ N G C K P P P C
Sbjct: 300 NLHATVCVYDNSKLTCECEHNTTGPDCGKC----KKNYQGRPWSPGSYLPIPKGAANACI 355
Query: 375 PSYTGARCESRICE-NKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKT 433
PS + E C NGGTC + C+CP +TG C++ +C+ G C
Sbjct: 356 PSISSIGTNVCDNELLHCQNGGTCHNNVR-CLCPAAYTGILCEKL---RCEEAGSC-GSD 410
Query: 434 TGLECDCPKFYYGKNC 449
+G + P + +
Sbjct: 411 SG-QGAPPHGTHHHHH 425
|
| >3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 3e-13
Identities = 36/229 (15%), Positives = 57/229 (24%), Gaps = 15/229 (6%)
Query: 324 DDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCE 383
+ C + + T K+ + P L + Y
Sbjct: 199 HTVLEIICTEEYSTGYTTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFT 258
Query: 384 SRICENKCHNGGTCIATTQTCVCPPGFTGDTC-QQCLNLKCQN-GGVCVNKTTGLECDCP 441
+ F + + KC VCV + L C+C
Sbjct: 259 VTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECE 318
Query: 442 KFYYGKNCQYSQCKNY---CVNGECSITDSGPKCMCSPGYSGKKCDTC-----TCLNG-- 491
G +C + G G C P S + C C NG
Sbjct: 319 HNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNELLHCQNGGT 378
Query: 492 -DSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRC 539
+ +C+C Y+G C+ C G+C +S P
Sbjct: 379 CHNNVRCLCPAAYTGILCEKLRCEEAGSCGSDS--GQGAPPHGTHHHHH 425
|
| >3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 5e-07
Identities = 33/205 (16%), Positives = 54/205 (26%), Gaps = 44/205 (21%)
Query: 415 CQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVN--GECSITDSGPKC 472
+L+ + V + E +++Y + + + C C +S C
Sbjct: 256 FFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTC 315
Query: 473 MCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPS 532
C +G C C Y G+ + L
Sbjct: 316 ECEHNTTGPDCGKCK-------------KNYQGRPWSPGSYLPIPKGAA----------- 351
Query: 533 QYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDS 592
C +S + +C N GTC C C Y+G C +
Sbjct: 352 ------NACIPSISSIGTNVCDNELLHCQNGGTCH---NNVRCLCPAAYTGILCEK---- 398
Query: 593 PSCHNYCDNAGLCSYSKQGKPVCTC 617
C+ AG C S G+
Sbjct: 399 --LR--CEEAGSCG-SDSGQGAPPH 418
|
| >3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 7e-05
Identities = 25/118 (21%), Positives = 40/118 (33%), Gaps = 13/118 (11%)
Query: 553 NKCTPNYCSNNG-TCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQG 611
C+ + CV K +C+C +G C + + + G +G
Sbjct: 292 KVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGK--CKKNYQGRPWSPGSYLPIPKG 349
Query: 612 KPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQ 669
C+ S I + + C NGGTC C+CP Y G+ C+
Sbjct: 350 AA-NACIPSISSIGTNVCDNELLHCQNGGTCHN---------NVRCLCPAAYTGILCE 397
|
| >4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525 | Back alignment and structure |
|---|
Score = 63.2 bits (153), Expect = 2e-10
Identities = 39/233 (16%), Positives = 55/233 (23%), Gaps = 33/233 (14%)
Query: 309 ARTCYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPT 368
+ +C+ D + CQ N G CE+ P Q
Sbjct: 324 SSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQC----KPFYFQHPERD------IR 373
Query: 369 YKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGV 428
C P + + C C G+ C C
Sbjct: 374 DPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAE 433
Query: 429 CVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCT- 487
C+ G + C G C C +G++CD C
Sbjct: 434 DPYGCKSCACNPL----GTIPGGNPC--DSETGYCY---------CKRLVTGQRCDQCLP 478
Query: 488 CLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
G S C P CD C + + C C GR+C
Sbjct: 479 QHWGLSNDLDGCRP------CD-CDLGGALNNSCSEDSGQCSCLPHMIGRQCN 524
|
| >4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 3e-09
Identities = 48/273 (17%), Positives = 74/273 (27%), Gaps = 36/273 (13%)
Query: 384 SRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLEC-DCPK 442
S N C+C G C+ C++ C C
Sbjct: 261 SECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNC 320
Query: 443 FYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPG 502
+ +C + G C G+ C+ C +
Sbjct: 321 NEHSSSCHFDMAVFLATGNVSG----GVCDNCQHNTMGRNCEQCKPFYF----QHPERDI 372
Query: 503 YSGKKCDTCTC-----LNGGTCIPNSKNNV------CKCPSQYTGRRCE-CAVGDT-SCA 549
C+ CTC NGG C + +V C+C G RC+ C G A
Sbjct: 373 RDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSA 432
Query: 550 SLANKCTPNYCSNNGTCVLIEGKPS----CKCLPPYSGKQCTE-------REDSPSCHNY 598
C C+ GT S C C +G++C + +
Sbjct: 433 EDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRP 492
Query: 599 CDNAGLCSYSKQGKPV---CTCVNGWSGITCSE 628
CD + + C+C+ G C+E
Sbjct: 493 CDCDLGGALNNSCSEDSGQCSCLPHMIGRQCNE 525
|
| >4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 2e-05
Identities = 35/219 (15%), Positives = 53/219 (24%), Gaps = 6/219 (2%)
Query: 452 SQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTC 511
S+C E CMC G C+ C ++ + G + C C
Sbjct: 261 SECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELC--MDFYHDLPWRPAEGRNSNACKKC 318
Query: 512 TCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEG 571
C + + G C T + +
Sbjct: 319 NCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHN-TMGRNCEQCKPFYFQHPERDIRDPNL 377
Query: 572 KPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVS 631
C C P S + C +G+ C G+ ++ +
Sbjct: 378 CEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYG 437
Query: 632 CAH-FCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQ 669
C C GT D + C C R G RC
Sbjct: 438 CKSCACNPLGTI-PGGNPCDSETGY-CYCKRLVTGQRCD 474
|
| >4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 23/137 (16%), Positives = 33/137 (24%), Gaps = 30/137 (21%)
Query: 311 TCYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKVNN-------------SMCPCLNQGM 357
C+ T C C+ + G C+ C C G
Sbjct: 389 ENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGT 448
Query: 358 CYPDLTHPEPTYKCHCAPSYTGARCE-----------------SRICENKCHNGGTCIAT 400
T C+C TG RC+ C+ +C
Sbjct: 449 IPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSED 508
Query: 401 TQTCVCPPGFTGDTCQQ 417
+ C C P G C +
Sbjct: 509 SGQCSCLPHMIGRQCNE 525
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 6e-10
Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 14/174 (8%)
Query: 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNN-IMVSTLEGRKKRTLLNTG-----LNEPYDIA 78
+P GVAV+ ++ D ++N+ I + EGR K G L P +A
Sbjct: 29 FTEPSGVAVNAQN-DIIVAD----TNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVA 83
Query: 79 LEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKAR 138
+ SG + TE +I + G+ +Q P G+T+D R+ + K
Sbjct: 84 VVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVM 142
Query: 139 TIESINLNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGN 191
+ + NG + P + V + ++ S R + + N G
Sbjct: 143 RVIIFDQNGNVLHKF-GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ 195
|
| >2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A* Length = 188 | Back alignment and structure |
|---|
Score = 58.0 bits (139), Expect = 7e-10
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 366 EPTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQN 425
C G G T + T Q + C C+N
Sbjct: 102 VVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPG----GCRN 157
Query: 426 GGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYC 458
GG C + C+CP ++G +C+ ++ ++
Sbjct: 158 GGFCNERRI---CECPDGFHGPHCEGTKHHHHH 187
|
| >2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A* Length = 188 | Back alignment and structure |
|---|
Score = 45.7 bits (107), Expect = 1e-05
Identities = 14/99 (14%), Positives = 24/99 (24%), Gaps = 5/99 (5%)
Query: 418 CLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPG 477
+N+ + C G G +I + +
Sbjct: 87 TVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEG-NTILXTPQNAIFFKT 145
Query: 478 YSGKKCDTCTCLNG---DSGPKCMCSPGYSGKKCDTCTC 513
+C C NG + C C G+ G C+
Sbjct: 146 CQQAECP-GGCRNGGFCNERRICECPDGFHGPHCEGTKH 183
|
| >2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A* Length = 188 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 3e-05
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 10/86 (11%)
Query: 404 CVCPPGFTGDTCQQC-LNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGE 462
C G + + + G + + K CQ ++C C NG
Sbjct: 107 FPCLGXQDGVAAFEVDVIVMNSEGNTILX-------TPQNAIFFKTCQQAECPGGCRNGG 159
Query: 463 CSITDSGPKCMCSPGYSGKKCDTCTC 488
+ C C G+ G C+
Sbjct: 160 --FCNERRICECPDGFHGPHCEGTKH 183
|
| >2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A* Length = 188 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 3e-05
Identities = 15/78 (19%), Positives = 22/78 (28%), Gaps = 10/78 (12%)
Query: 470 PKCMCSPGYSGKKCDTCTC-LNGDSGPKCMCSPG------YSGKKCDTCTCLNGGTCIPN 522
C G + G + +P + C NGG C
Sbjct: 105 VGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNER 164
Query: 523 SKNNVCKCPSQYTGRRCE 540
+C+CP + G CE
Sbjct: 165 ---RICECPDGFHGPHCE 179
|
| >2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A* Length = 188 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 2e-04
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 599 CDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICI 658
+ + +G + ++ C C NGG C E+ IC
Sbjct: 118 AFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNERR---------ICE 168
Query: 659 CPRGYAGVRCQTLVHY 674
CP G+ G C+ H+
Sbjct: 169 CPDGFHGPHCEGTKHH 184
|
| >2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A* Length = 188 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 4e-04
Identities = 21/137 (15%), Positives = 31/137 (22%), Gaps = 22/137 (16%)
Query: 463 CSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPN 522
S+ M P + T C G + N
Sbjct: 73 LSLRSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDV-----IVMN 127
Query: 523 SKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYS 582
S+ N Q C P C N G C + C+C +
Sbjct: 128 SEGNTILXTPQNAIFFKTCQ----------QAECPGGCRNGGFCN---ERRICECPDGFH 174
Query: 583 GKQCTEREDSPSCHNYC 599
G C + H++
Sbjct: 175 GPHC----EGTKHHHHH 187
|
| >3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 5e-09
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 5/92 (5%)
Query: 417 QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQY-----SQCKNYCVNGECSITDSGPK 471
C++ C + G C + G C C Y G NC+ + C
Sbjct: 7 PCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYT 66
Query: 472 CMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGY 503
C C+ GY + + + S
Sbjct: 67 CSCAQGYRLGEDHKQCVPHDQCACGVLTSEKR 98
|
| >3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 7e-08
Identities = 18/107 (16%), Positives = 30/107 (28%), Gaps = 8/107 (7%)
Query: 505 GKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNG 564
G C + CL+ G+C + C C Y G CE A + C ++C
Sbjct: 5 GSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNE--CHPERTDGCQHFCLPG- 61
Query: 565 TCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQG 611
+ +C C Y + ++
Sbjct: 62 -----QESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQ 103
|
| >3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 11/86 (12%)
Query: 382 CESRICENKCHNGGTCI--ATTQTCVCPPGFTGDTCQQCLN--LKCQNGG---VCVNKTT 434
C S C + G+C TC C PG+ G C+ N + G C+
Sbjct: 8 CIS----QPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQE 63
Query: 435 GLECDCPKFYYGKNCQYSQCKNYCVN 460
C C + Y +
Sbjct: 64 SYTCSCAQGYRLGEDHKQCVPHDQCA 89
|
| >3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 19/104 (18%)
Query: 553 NKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTE------REDSPSCHNYCDNAGLCS 606
+ C C +NG+C +C C P Y G C E + C ++C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPG---- 61
Query: 607 YSKQGKPVCTCVNGWSGITCSE------RVSCAHFCFNGGTCRE 644
Q C+C G+ + + +C
Sbjct: 62 ---QESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDL 102
|
| >3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 2/90 (2%)
Query: 316 CNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAP 375
++G+C+ D + C C + G+ CE N P G C + +Y C CA
Sbjct: 14 LHNGSCQ-DSIWGYTCTCSPGYEGSNCELAKNECHPERTDG-CQHFCLPGQESYTCSCAQ 71
Query: 376 SYTGARCESRICENKCHNGGTCIATTQTCV 405
Y + + G + +
Sbjct: 72 GYRLGEDHKQCVPHDQCACGVLTSEKRAPD 101
|
| >3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 8e-05
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 19/88 (21%)
Query: 351 PCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRI----------CENKCHNGGTCIAT 400
PCL+ G C + Y C C+P Y G+ CE C++ C G
Sbjct: 12 PCLHNGSCQDSIW----GYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQ----E 63
Query: 401 TQTCVCPPGFT-GDTCQQCLNLKCQNGG 427
+ TC C G+ G+ +QC+ G
Sbjct: 64 SYTCSCAQGYRLGEDHKQCVPHDQCACG 91
|
| >3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 16/88 (18%), Positives = 25/88 (28%), Gaps = 8/88 (9%)
Query: 487 TCLNGDSGPKCMCSPGYSGKKC-----DTCTCLNGGT---CIPNSKNNVCKCPSQYTGRR 538
+C + G C CSPGY G C + G C+P ++ C C Y
Sbjct: 18 SCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGE 77
Query: 539 CECAVGDTSCASLANKCTPNYCSNNGTC 566
+ + +
Sbjct: 78 DHKQCVPHDQCACGVLTSEKRAPDLQDL 105
|
| >2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A Length = 217 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 7e-09
Identities = 37/203 (18%), Positives = 60/203 (29%), Gaps = 21/203 (10%)
Query: 437 ECDCPKFYYGKNCQYSQCKNYCVNGECS--ITDSGPKCMCSPGYSGKKCDTCTCLNGDSG 494
+ C +N C +N + + + +C+ + + +
Sbjct: 22 DSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVL 81
Query: 495 PKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANK 554
P+C C D C G +C+C + Y G+ CEC S L
Sbjct: 82 PQCECRCRDQS--RDRSLCHGKGFLE----CGICRCDTGYIGKNCECQTQGRSSQELEGS 135
Query: 555 CTPN----YCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCD--NAGLCSYS 608
C + CS G CV C C + + C+ N +C
Sbjct: 136 CRKDNNSIICSGLGDCV----CGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGP 191
Query: 609 KQGKPV---CTCVNGWSGITCSE 628
+G C C G+ G C
Sbjct: 192 GRGLCFCGKCRCHPGFEGSACQH 214
|
| >2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A Length = 217 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 2e-05
Identities = 32/162 (19%), Positives = 41/162 (25%), Gaps = 36/162 (22%)
Query: 382 CESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCP 441
+ + CH G C C G+ G C+ CQ G + LE C
Sbjct: 89 RDQSRDRSLCHGKGFLEC--GICRCDTGYIGKNCE------CQTQGRS---SQELEGSCR 137
Query: 442 KFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSP 501
K C CV G+C C K G C C
Sbjct: 138 KDNNSIIC---SGLGDCVCGQCL---------CHTSDVPGKL--------IYGQYCECDT 177
Query: 502 GY-SGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECA 542
C G C C+C + G C+
Sbjct: 178 INCERYNGQVCGGPGRGLCF----CGKCRCHPGFEGSACQHH 215
|
| >2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A Length = 217 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 7e-04
Identities = 26/135 (19%), Positives = 33/135 (24%), Gaps = 25/135 (18%)
Query: 303 SCKVAPARTCYLDCN-HGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPD 361
C+ C+ G E C C + G CE +G C D
Sbjct: 85 ECRCRDQSRDRSLCHGKGFLE-----CGICRCDTGYIGKNCECQTQGRSSQELEGSCRKD 139
Query: 362 LTHPE-------PTYKCHCAPSYTGARCES------------RICENKCHNGGTCIATTQ 402
+C C S + R C G +
Sbjct: 140 NNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCG 199
Query: 403 TCVCPPGFTGDTCQQ 417
C C PGF G CQ
Sbjct: 200 KCRCHPGFEGSACQH 214
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 8e-09
Identities = 75/522 (14%), Positives = 138/522 (26%), Gaps = 148/522 (28%)
Query: 3 SISSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK 62
+ NV+R++ + L+ L L + V +D G ++ G
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLID--G----------------VL----GSG 162
Query: 63 KRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGIT 122
K + Y + + ++FW L + +D N + +
Sbjct: 163 KTWVALDVCLS-YKV-QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 123 IDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYK--LEVFEDNLYFSTYRT 180
+ R++ + R R + KPY+ L V N+
Sbjct: 221 SNIK-LRIHSIQAELR-----------RLLK-------SKPYENCLLVL-LNVQ-----N 255
Query: 181 NNILKINKFGN-----------SDFNVLANN------LNRASDVLILQENKQ--AHNVTN 221
N F + L+ L+ S L E K +
Sbjct: 256 AKA--WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 222 HCDDKP---CHQSALCINLPSSHTCLCPDHL----------TEELNVTSGKMSCKV-APA 267
D P + +++ + D L ++L + S V PA
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAE---SIRDGLATWDNWKHVNCDKLTTII-ESSLNVLEPA 369
Query: 268 --RTCYLDC----NHGNLPSSHTCL--------CPDHLTEELNVTSGKMSCKVAPARTCY 313
R + ++P+ L + +L+ S + K T
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS--LVEKQPKESTIS 427
Query: 314 LDCNHG-----TCEFDDDFDPH--CICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPE 366
+ + ++++ H + N T+ ++ + P Y + H
Sbjct: 428 I---PSIYLELKVKLENEYALHRSIVDHYNIPKTFD---SDDLIPPYLDQYFYSHIGH-- 479
Query: 367 PTYKCHCAPSYTGARCES--------RICENKCHNGGTCIATTQTCVCPPGFTGDTCQQC 418
H R R E K I T G +T QQ
Sbjct: 480 -----HLKNIEHPERMTLFRMVFLDFRFLEQK-------IRHDSTAWNASGSILNTLQQ- 526
Query: 419 LNLKCQNGGVCVNKTT--GLECDCPKFY--YGKNCQYSQCKN 456
LK +C N L F +N S+ +
Sbjct: 527 --LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A Length = 463 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 8e-09
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 364 HPEPTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQ 417
+ PT KC C+P + G C + CE C +GG C+ + C+C G+ G C+Q
Sbjct: 403 YCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNK-CLCKKGYLGPQCEQ 455
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A Length = 463 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 7e-08
Identities = 25/116 (21%), Positives = 35/116 (30%), Gaps = 15/116 (12%)
Query: 556 TPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVC 615
++NG I + + C C N K C
Sbjct: 356 KSMTQTHNGKLYKIVDPKRPLMPEECRATVQPAQTLTSECSRLCRNGYCTPTGK-----C 410
Query: 616 TCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTL 671
C GW G C C C +GG C N C+C +GY G +C+ +
Sbjct: 411 CCSPGWEGDFC-RTAKCEPACRHGGVCVRPNK---------CLCKKGYLGPQCEQV 456
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A Length = 463 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 5e-06
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 27/89 (30%)
Query: 452 SQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTC 511
S+C C NG C+ T KC CSPG+ G C T KC+
Sbjct: 393 SECSRLCRNGYCTPTG---KCCCSPGWEGDFCRTA--------------------KCEP- 428
Query: 512 TCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
C +GG C+ + N C C Y G +CE
Sbjct: 429 ACRHGGVCV---RPNKCLCKKGYLGPQCE 454
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A Length = 463 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 2e-04
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 399 ATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYC 458
+ C +C L C+NG +C C + G C+ ++C+ C
Sbjct: 376 LMPEECRATVQPAQTLTSECSRL-CRNGYCTPTG----KCCCSPGWEGDFCRTAKCEPAC 430
Query: 459 VNGECSITDSGPKCMCSPGYSGKKCD 484
+G + + KC+C GY G +C+
Sbjct: 431 RHGGVCVRPN--KCLCKKGYLGPQCE 454
|
| >2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-08
Identities = 22/92 (23%), Positives = 29/92 (31%), Gaps = 12/92 (13%)
Query: 406 CPPGFTGDTCQ----QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYS---QCKNYC 458
QC + CQNGG C ++ C C + G+NC+ Q
Sbjct: 34 AERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVN 93
Query: 459 VNGECSIT-----DSGPKCMCSPGYSGKKCDT 485
NG C + C C GYS
Sbjct: 94 ENGGCEQYCSDHTGTKRSCRCHEGYSLLADGV 125
|
| >2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 18/87 (20%), Positives = 23/87 (26%), Gaps = 6/87 (6%)
Query: 316 CNHGTCEFDDDFDPHCICQENFYGTYCEKVNN--SMCPCLNQGMCYPDLTHPEPTYKCHC 373
N G+C+ D C C F G CE + +C N G H C C
Sbjct: 56 QNGGSCK-DQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRC 114
Query: 374 APSYTGARCESRICE---NKCHNGGTC 397
Y+ C
Sbjct: 115 HEGYSLLADGVSCTPTVEYPCGKIPIL 141
|
| >2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 26/133 (19%), Positives = 40/133 (30%), Gaps = 30/133 (22%)
Query: 458 CVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGG 517
C +CS ++ + + +GD +C SP C NGG
Sbjct: 17 CKEEQCSFEEAREIFKDAERTKL---FWISYSDGD---QCASSP-----------CQNGG 59
Query: 518 TCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKP---- 573
+C ++ +C C + GR CE + N G
Sbjct: 60 SCKDQLQSYICFCLPAFEGRNCETHK---------DDQLICVNENGGCEQYCSDHTGTKR 110
Query: 574 SCKCLPPYSGKQC 586
SC+C YS
Sbjct: 111 SCRCHEGYSLLAD 123
|
| >2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 21/111 (18%), Positives = 31/111 (27%), Gaps = 5/111 (4%)
Query: 562 NNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGW 621
C E + K + + + C N G C + +C C+ +
Sbjct: 18 KEEQCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCK-DQLQSYICFCLPAF 76
Query: 622 SGITCSERVS-CAHF-CFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQT 670
G C NGG Q S K C C GY+ +
Sbjct: 77 EGRNCETHKDDQLICVNENGGCE--QYCSDHTGTKRSCRCHEGYSLLADGV 125
|
| >1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 2e-08
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 13/83 (15%)
Query: 471 KCMCSPGYSGKKCDTC-----TCLNGDSGPKCMCSPGYSG------KKCDTCTCLNGGTC 519
+ +C + L + C C+ G + K C C NGGTC
Sbjct: 3 QVICRDEKTQMIYQQHQSWLRPVLRSNRVEYCWCNSGRAQCHSVPVKSCSEPRCFNGGTC 62
Query: 520 IPNSKNN--VCKCPSQYTGRRCE 540
+ VC+CP + G+ CE
Sbjct: 63 QQALYFSDFVCQCPEGFAGKSCE 85
|
| >1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-07
Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 18/93 (19%)
Query: 331 CICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICE-- 388
IC++ ++ + + P L C C +
Sbjct: 4 VICRDEKTQMIYQQHQSWLRPVLRSNR----------VEYCWCNSGRAQ-CHSVPVKSCS 52
Query: 389 -NKCHNGGTCIATTQ----TCVCPPGFTGDTCQ 416
+C NGGTC C CP GF G +C+
Sbjct: 53 EPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE 85
|
| >1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 3e-07
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 8/88 (9%)
Query: 368 TYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQQ---CLNLKCQ 424
+Y+ C T + + + C C G C +C
Sbjct: 1 SYQVICRDEKTQMIYQQHQSWLRPVLRS---NRVEYCWCNSGRAQCHSVPVKSCSEPRCF 57
Query: 425 NGGVCVN--KTTGLECDCPKFYYGKNCQ 450
NGG C + C CP+ + GK+C+
Sbjct: 58 NGGTCQQALYFSDFVCQCPEGFAGKSCE 85
|
| >1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 7e-06
Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 15/98 (15%)
Query: 574 SCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCA 633
C + + + C C +G + SC+
Sbjct: 3 QVICRDEKTQMIYQQHQSWLRPV----------LRSNRVEYCWCNSGRAQCHSVPVKSCS 52
Query: 634 HF-CFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQT 670
CFNGGTC++ Y D +C CP G+AG C+
Sbjct: 53 EPRCFNGGTCQQALYFSDF----VCQCPEGFAGKSCEI 86
|
| >1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-05
Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Query: 330 HCICQENFYGTYCEKVN-NSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICE 388
+C C + V S C N G C L + C C + G CE
Sbjct: 33 YCWCNSGRAQCHSVPVKSCSEPRCFNGGTCQQAL--YFSDFVCQCPEGFAGKSCEIDTRA 90
|
| >1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 2e-04
Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 13/93 (13%)
Query: 496 KCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKC 555
+ +C + + +++ C C S + C
Sbjct: 3 QVICRDEKTQMIYQQHQS-WLRPVLRSNRVEYCWCNSGRAQ----------CHSVPVKSC 51
Query: 556 TPNYCSNNGTCVLIEGKP--SCKCLPPYSGKQC 586
+ C N GTC C+C ++GK C
Sbjct: 52 SEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSC 84
|
| >3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 7e-08
Identities = 39/312 (12%), Positives = 66/312 (21%), Gaps = 40/312 (12%)
Query: 359 YPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQ-- 416
+ G + + PP G +
Sbjct: 132 LRAAALKLTLASVREREPFKG--WIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEA 189
Query: 417 --QCLNLKCQNGGVCVNKTTGLECDCPK-FYYGKNCQYSQC--------KNYCVNGECSI 465
+ C NGGVC CDC + + GK+C + Y
Sbjct: 190 GEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQN 249
Query: 466 TDSGPKCMCSPGYSGKKCDTCTCLNGDSG-----------PKCMCSPGYSGKKCDTCTCL 514
+ + + + G S + + G L
Sbjct: 250 PIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSG-----AFEAL 304
Query: 515 NGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPS 574
+ N R+ +V + + + + G PS
Sbjct: 305 VEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTML-GSDDFFYVGGSPS 363
Query: 575 CKCLPPYSGKQ----CTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERV 630
LP C + N L +KQG P ++G C
Sbjct: 364 TADLPGSPVSNNFMGCLK---EVVYKNNDVRLELSRLAKQGDP-KMKIHGVVAFKCENVA 419
Query: 631 SCAHFCFNGGTC 642
+ F
Sbjct: 420 TLDPITFETPES 431
|
| >3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 6e-05
Identities = 29/223 (13%), Positives = 58/223 (26%), Gaps = 13/223 (5%)
Query: 408 PGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITD 467
P + +T + CL+ C+N G+C + CDC Y + +G +
Sbjct: 612 PSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKI 671
Query: 468 SGPKCMCSPGYSGK------KCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIP 521
P M + + + L G
Sbjct: 672 QLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLGKGPETL 731
Query: 522 NSKNNVC-----KCPSQYTGRRCECAVGDTSCAS--LANKCTPNYCSNNGTCVLIEGKPS 574
+ N+ G+ + V D + +A T N T ++ E +
Sbjct: 732 FAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYL 791
Query: 575 CKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTC 617
+ G + + + + C N + +
Sbjct: 792 SSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRN 834
|
| >3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 2e-04
Identities = 41/319 (12%), Positives = 70/319 (21%), Gaps = 39/319 (12%)
Query: 392 HNGGTCIATTQTCVCPPGFTGDTCQQCLNLK----CQNGGVCVNKTTGLECDCPKFYYGK 447
T + F G + +G V ++ G+
Sbjct: 132 LRAAALKLTLASVREREPFKGWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGE 191
Query: 448 NCQYSQCKNYCVNGECSITDSGPKCMCS-PGYSGKKCDTCT--CLNGDSGPKCMCSPGYS 504
+ C N G CS+ D C CS G+ GK C + G + C
Sbjct: 192 EGEGGVCLN---GGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQ 248
Query: 505 GKKCDTCTCL---------NGGTCIPNSKNNVCKCPSQYTGR-RCECAVGDTSCASLANK 554
+ + NG + + G +G + +L
Sbjct: 249 NPIQSSSDEITLSFKTLQRNGLMLHTGKSADYV-NLALKNGAVSLVINLGSGAFEALVEP 307
Query: 555 CTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPV 614
+ N + +Q T D +
Sbjct: 308 VNGKFNDNA----------WHDVKVTRNLRQVTISVDGILTTT-GYTQEDYTMLGSDDFF 356
Query: 615 CTC----VNGWSGITCSER-VSC-AHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRC 668
G S + C + R + L P + G +C
Sbjct: 357 YVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDP-KMKIHGVVAFKC 415
Query: 669 QTLVHYISKKQSYVNSHIS 687
+ + S IS
Sbjct: 416 ENVATLDPITFETPESFIS 434
|
| >1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-07
Identities = 17/108 (15%), Positives = 28/108 (25%), Gaps = 18/108 (16%)
Query: 339 GTYCEKVNNSMC---PCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCH--- 392
G C + C G C + ++ C C + G C+ + C
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCIDGIG----SFSCDCRSGWEGRFCQREVSFLNCSLDN 61
Query: 393 --NGGTCIATTQ--TCVCPPGFTGDTCQQ----CLNLKCQNGGVCVNK 432
C+ C C PG+ + C + K
Sbjct: 62 GGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRMEK 109
|
| >1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-06
Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 8/106 (7%)
Query: 544 GDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCH-NYCDNA 602
GD + C +GTC+ G SC C + G+ C +C +
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCT 65
Query: 603 GLCSYSKQGKPVCTCVNGWSG----ITCSERVSCAHFCFNGGTCRE 644
C + G C+C G+ + C V C E
Sbjct: 66 HYCL-EEVGWRRCSCAPGYKLGDDLLQCHPAVKFP--CGRPWKRME 108
|
| >1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 3e-06
Identities = 22/128 (17%), Positives = 36/128 (28%), Gaps = 31/128 (24%)
Query: 412 GDTCQ-----QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSIT 466
GD C C G C++ CDC + G+ CQ + ++
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQ--REVSFL-------- 55
Query: 467 DSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKK-------CDTCTCLNGGTC 519
C G CL +C C+PGY C
Sbjct: 56 ----NCSLDNGGCTH-----YCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKR 106
Query: 520 IPNSKNNV 527
+ ++++
Sbjct: 107 MEKKRSHL 114
|
| >1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 6e-05
Identities = 15/94 (15%), Positives = 22/94 (23%), Gaps = 18/94 (19%)
Query: 483 CDTCTCLNGDSGPKCMCSPGYSGKKCDTCT---------CLNGGTCIPNSKNNVCKCPSQ 533
C TC++G C C G+ G+ C C+ C C
Sbjct: 23 CGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPG 82
Query: 534 YTGRRCECAVGDTSCASLANKCTPNYCSNNGTCV 567
Y C + C +
Sbjct: 83 YKLGDDL-----LQC----HPAVKFPCGRPWKRM 107
|
| >1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 1e-04
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 12/90 (13%)
Query: 316 CNHGTCEFDDDFDPHCICQENFYGTYCEKVNN----SMCPCLNQGMCYPDLTHPEPTYKC 371
C HGTC D C C+ + G +C++ + S+ C ++ +C
Sbjct: 23 CGHGTCI-DGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVG----WRRC 77
Query: 372 HCAPSYTGARCESRI---CENKCHNGGTCI 398
CAP Y + + C +
Sbjct: 78 SCAPGYKLGDDLLQCHPAVKFPCGRPWKRM 107
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 1e-06
Identities = 25/199 (12%), Positives = 57/199 (28%), Gaps = 14/199 (7%)
Query: 3 SISSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK 62
+ G + + + N + + G+A G +L T S + + +G
Sbjct: 49 NHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTV 107
Query: 63 KRTLLNTGLNEPYDIALEPLSGRMFWTELGIK---------PRISGASIDGKNKFNLVDN 113
+ L I + + P S + ++
Sbjct: 108 ETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES 166
Query: 114 NIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEV-FEDN 172
G+ LY ++ + + I ++ D+ E N
Sbjct: 167 VFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN 224
Query: 173 LYFSTYRTNNILKINKFGN 191
LY +T+ N++++I +
Sbjct: 225 LYGATHIYNSVVRIAPDRS 243
|
| >2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens} Length = 486 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 1e-06
Identities = 36/220 (16%), Positives = 52/220 (23%), Gaps = 5/220 (2%)
Query: 410 FTGDTCQQCLNLKCQNGGVCVNKTTGLECD--CPKFYYGKNCQYSQCKNYCVNGECSITD 467
+ + ++ + +NK EC CP GK + N C T
Sbjct: 127 YLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCW-TH 185
Query: 468 SGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTC-TCLNGGTCIPNSKNN 526
S + +C C L S CS KC C G C+
Sbjct: 186 SHCQKVCPTICKSHGCT-AEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPP 244
Query: 527 VCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQC 586
C C + + Y +N C+ C
Sbjct: 245 YYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPC 304
Query: 587 TEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGITC 626
+ S Q CT +NG I
Sbjct: 305 LGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINI 344
|
| >2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens} Length = 486 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 4e-04
Identities = 29/250 (11%), Positives = 55/250 (22%), Gaps = 24/250 (9%)
Query: 354 NQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGD 413
N +CY + ++ C + C G +
Sbjct: 122 NNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPAT-VINGQFVE 180
Query: 414 TCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQY-------SQCKNYCVNGECSIT 466
C + + +C + E C NC C+N+ ++G C T
Sbjct: 181 RCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVET 240
Query: 467 DSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNN 526
C P Y + C S ++ ++ C
Sbjct: 241 -------CPPPYYHFQDWRCVN--FSFCQDLHHKCKNSRRQGCHQYVIHNNKC------- 284
Query: 527 VCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQC 586
+ +CPS YT + + C +
Sbjct: 285 IPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINI 344
Query: 587 TEREDSPSCH 596
+ +
Sbjct: 345 RGGNNLAAEL 354
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Length = 331 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 24/202 (11%), Positives = 56/202 (27%), Gaps = 15/202 (7%)
Query: 2 ASISSGNVTRVKREMNLKTVLSNL---HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTL 58
S + +++ ++ V++ V + + T G N+ +
Sbjct: 57 TSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSF 115
Query: 59 EGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNI--- 115
K + + + IA+ P + + + L D
Sbjct: 116 LKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVR--RFKIDADGVLFDTGQEFI 172
Query: 116 ---QWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDN 172
P IT + A+ +I + + + + P + V D
Sbjct: 173 SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDG 232
Query: 173 --LYFSTYRTNNILKINKFGNS 192
+Y T T ++ N+ +
Sbjct: 233 STVYVLTESTVDVFNFNQLSGT 254
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Length = 331 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 26/184 (14%), Positives = 51/184 (27%), Gaps = 19/184 (10%)
Query: 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMV---STLEGRKKRTLLNTGLNEPYDIALEPL 82
+D A+ N+ T ++ + G + D+ + P
Sbjct: 40 YDFVDTAITSDCSNVVVTSDF---CQTLVQIETQLEPPKVVAIQ--EGQSSMADVDITP- 93
Query: 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQ---WPTGITIDYPSQRLYWAD-PKAR 138
+ T G+ + S N + I GI I L D A
Sbjct: 94 DDQFAVTVTGLNHPFNMQSYSFLK--NKFISTIPIPYDAVGIAISPNGNGLILIDRSSAN 151
Query: 139 TIESINL--NGKDRFVVYHTEDNGYKPYKLEVFEDN--LYFSTYRTNNILKINKFGNSDF 194
T+ + +G G +P+ + D + + N+I + +
Sbjct: 152 TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI 211
Query: 195 NVLA 198
+L
Sbjct: 212 TLLN 215
|
| >3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* Length = 913 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 3e-06
Identities = 51/405 (12%), Positives = 91/405 (22%), Gaps = 46/405 (11%)
Query: 304 CKVAPARTCYLDCNHGTCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLT 363
K P + N + C + + Q C+ +
Sbjct: 495 AKFDPCQCAPCPNNGRPTLSGTECLCVCQSGTYGENCEKQSPDYKSNAVDGQWGCWSSWS 554
Query: 364 HPEPTYK-------CHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTG--DT 414
+ TYK + AP G RCE + + Q C+ D
Sbjct: 555 TCDATYKRSRTRECNNPAPQRGGKRCEGEKRQEEDCTFSIMENNGQPCINDDEEMKEVDL 614
Query: 415 CQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSIT--DSGPKC 472
+ + C N E + G++ + S + G G
Sbjct: 615 PEIEADSGCPQPVPPENGFIRNEKQL--YLVGEDVEISCLTGFETVGYQYFRCLPDGTWR 672
Query: 473 MCSPGYSGKKCDTCTCLNGDSGP------------KCMCSPGYSGKKCDTCTCLNG---- 516
+C + + C G+ TC
Sbjct: 673 QGDVECQRTECIKPVVQEVLTITPFQRLYRIGESIELTCPKGFVVAGPSRYTCQGNSWTP 732
Query: 517 --------GTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVL 568
C+ + +G C C + C + + + C +
Sbjct: 733 PISNSLTCEKDTLTKLKGHCQLGQKQSGSECICMSPEEDC----SHHSEDLCVFDTDSND 788
Query: 569 IEGKPSCKCLPPY-SGKQCTEREDSPSCHNYCD-NAGLCSYSKQGKPVCTCVNGWSGITC 626
P+CK L Q SC + GL G+ TC
Sbjct: 789 YFTSPACKFLAEKCLNNQQLHFLHIGSCQDGRQLEWGLERTRLSSNSTKKESCGYD--TC 846
Query: 627 SERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTL 671
+ C+ + C + C+ + +
Sbjct: 847 YDWEKCSAST-SKCVCLLPPQCFKGGNQLYCVKMGSSTSEKTLNI 890
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 26/179 (14%), Positives = 56/179 (31%), Gaps = 37/179 (20%)
Query: 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG-LNEPYDIALEPLS 83
GVA+D NL R + ++ + + G + E + ++P +
Sbjct: 23 PGQVSGVALDSKN-NLVIFH---RGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN 78
Query: 84 GRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESI 143
+ GKN F P G++ID + D + +
Sbjct: 79 AEIL-------------QSSGKNLFY-------LPHGLSID-TDGNYWVTDVALHQVFKL 117
Query: 144 NLNGKDRFVVYHTEDNG--------YKPYKLEVFED--NLYFSTYRTNN-ILKINKFGN 191
+ + K+ ++ +P + V ++ S N+ I++ + G
Sbjct: 118 DPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK 176
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 8e-04
Identities = 31/190 (16%), Positives = 61/190 (32%), Gaps = 31/190 (16%)
Query: 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG---------LNEPY 75
P VAV+ ++ +D G ++ I+ + G+ + P+
Sbjct: 142 FCQPTDVAVEPSTGAVFVSD--GYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPH 199
Query: 76 DIALEPLSG------------RMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITI 123
+AL P + F T+ R + G+N F I + G
Sbjct: 200 SLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVF-----AISYIPGFLF 254
Query: 124 DYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYK-PYKLEVFED-NLYFSTYRTN 181
+ + Y+ D + +N + + V+ + P+ + ED +Y TN
Sbjct: 255 A-VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN 313
Query: 182 NILKINKFGN 191
+ K
Sbjct: 314 TVWKFTLTEK 323
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Length = 353 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 23/176 (13%), Positives = 63/176 (35%), Gaps = 19/176 (10%)
Query: 26 HDPRGVAVDWVGKNLYWTDAGGRS------SNNIMVSTLEGRKKRTLLNTGLNEPYDIAL 79
P G ++ + L++ + + + L ++ +P ++
Sbjct: 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVA 148
Query: 80 EPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNI----QWPTGITIDYPSQRLYWADP 135
+ + ++ + +G + I +DG N + I + TG+ +D +RLY +
Sbjct: 149 DDATNTVYISGIGKESVIW--VVDGGN--IKLKTAIQNTGKMSTGLALDSEGKRLYTTNA 204
Query: 136 KARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDN----LYFSTYRTNNILKIN 187
I +I+ D+G + + + + D + + + +L ++
Sbjct: 205 DGELI-TIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVD 259
|
| >1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186 | Back alignment and structure |
|---|
Score = 44.3 bits (103), Expect = 4e-05
Identities = 26/166 (15%), Positives = 42/166 (25%), Gaps = 8/166 (4%)
Query: 458 CVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGG 517
C NG+ + CMC+ G +TC N C G C
Sbjct: 13 CXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXN-------ECXXETLGXACGEFGQCIEN 65
Query: 518 TCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKC 577
C C YT C + + +
Sbjct: 66 PDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXV 125
Query: 578 LPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSG 623
P CT ++ + +C + +G C C+ G++
Sbjct: 126 PNPEDEXXCTXTGETACQLXCNTDNEVC-XNVEGVYXCQCMEGFTF 170
|
| >1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4 Length = 105 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 5e-05
Identities = 18/92 (19%), Positives = 26/92 (28%), Gaps = 9/92 (9%)
Query: 553 NKCTPNYCSNNGTCVLIE-GKPSCKCLPPYSGKQCTEREDSPSCHNY---CDNAGLCSYS 608
+KC N C G +CL + S +C C C+
Sbjct: 11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMD 70
Query: 609 KQGKPVCTCVNGWS-----GITCSERVSCAHF 635
+ + C C S G+ CS H
Sbjct: 71 DKKEVECKCTKEGSEPLFEGVFCSSSSGPHHH 102
|
| >2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 7e-05
Identities = 28/143 (19%), Positives = 41/143 (28%), Gaps = 28/143 (19%)
Query: 456 NYCVNGECSITDSGPKCMCSPGYSGKKC-------DTCTCLNGDSGPKCMCSPGYSGKKC 508
+ C+NG C + C CS + TC +C + + K
Sbjct: 10 SPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKS 69
Query: 509 DTCTCLNGGTCIPNSKNNV-CKCPSQYTGRRC-------ECAVGDTSCASLANKCTPNYC 560
C+ L P + V C Y+ + EC V C
Sbjct: 70 QCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGVC------------ 117
Query: 561 SNNGTCVLIEGKPSCKCLPPYSG 583
NG CV G C+C +
Sbjct: 118 -KNGLCVNTRGSFKCQCPSGMTL 139
|
| >2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 30/137 (21%), Positives = 42/137 (30%), Gaps = 22/137 (16%)
Query: 418 CLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYS-------QCKNYCVNGECSITDSGP 470
C + C NG VC N C+C + C ++G C I +G
Sbjct: 7 CESSPCING-VCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGA 65
Query: 471 KCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCT----------CLNGGTCI 520
S C +C GYS K C G C+
Sbjct: 66 TLKSQCCSSLGAAWGSPCTLC--QVDPICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCV 123
Query: 521 PNSKNN-VCKCPSQYTG 536
N++ + C+CPS T
Sbjct: 124 -NTRGSFKCQCPSGMTL 139
|
| >2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 6e-04
Identities = 18/126 (14%), Positives = 33/126 (26%), Gaps = 20/126 (15%)
Query: 330 HCICQENFYGTYCEK--VNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRIC 387
C C + + C + + + + ++C S +
Sbjct: 25 ICECSSESTLDPTKTICIETIKGTCWQTVIDG--------RCEININGATLKSQCCSSLG 76
Query: 388 ENKCHNGGTCIATTQTCVCPPGFTGDTCQQC-------LNLKCQNGGVCVNKTTGLECDC 440
G C +C G++ QC + G+CVN +C C
Sbjct: 77 ---AAWGSPCTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQC 133
Query: 441 PKFYYG 446
P
Sbjct: 134 PSGMTL 139
|
| >2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein domain, chitin-binding, GERM agglutinin, chitin-binding protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum} PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A 9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A* 2x52_A* 1t0w_A* Length = 171 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 7e-05
Identities = 34/168 (20%), Positives = 44/168 (26%), Gaps = 12/168 (7%)
Query: 381 RCESRICENKCHNGGTCIA----TTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNK---- 432
RC + +C N C C G C Q GG
Sbjct: 2 RCGEQGSNMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCC 61
Query: 433 TTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGD 492
+ C Y G CQ C+ G + P +C + + C G
Sbjct: 62 SQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGC 121
Query: 493 SGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
C + GK C N C SK C Y G C+
Sbjct: 122 QSGAC-STDKPCGKDAGGRVCTNNYCC---SKWGSCGIGPGYCGAGCQ 165
|
| >2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A* Length = 280 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 7e-05
Identities = 31/162 (19%), Positives = 50/162 (30%), Gaps = 22/162 (13%)
Query: 437 ECDCPKFYYGKNCQYSQCKNYCVN--GECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSG 494
+ C +N C +N + + +C+ + + +
Sbjct: 122 DSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVL 181
Query: 495 PKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANK 554
P+C C + D C G +C+C + Y G+ CEC S L
Sbjct: 182 PQCECR--CRDQSRDRSLCHGKGFLE----CGICRCDTGYIGKNCECQTQGRSSQELEGS 235
Query: 555 CTPN----YCSNNGTCVLIEGKPSCKCLPP------YSGKQC 586
C + CS G CV G+ C C G+ C
Sbjct: 236 CRKDNNSIICSGLGDCV--CGQ--CLCHTSDVPGKLIYGQYC 273
|
| >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 21/138 (15%), Positives = 30/138 (21%), Gaps = 28/138 (20%)
Query: 403 TCVCPPGFTGD----TCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYC 458
C CPP F + C + C C
Sbjct: 25 ICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKA 84
Query: 459 VNGECSI------TDSGPKCMCSPGYSGKK-----------------CDTCTCLNGDSGP 495
C + ++ C G+ C C+N
Sbjct: 85 WGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSF 144
Query: 496 KCMCSPGYSGKKCDTCTC 513
+C C GY + DT C
Sbjct: 145 QCRCPTGYYLNE-DTRVC 161
|
| >3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 548 CASLANKCTPNYCSNNGTCVLIEGKPSCKC-LPPYSGKQCTEREDSPSCHNYCDNAGLCS 606
C + C + CSN G C+ SC C + +SG C D + + + G +
Sbjct: 181 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLC---NDPGTTYIFSKGGGQIT 237
Query: 607 YSKQ 610
Y
Sbjct: 238 YKWP 241
|
| >3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 16/59 (27%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 414 TCQQCLNLKCQNGGVCVNKTTGLECDCPKFYY-GKNCQYSQCKNYCVNGECSITDSGPK 471
C C N GVC+ + G CDC + G C G IT P
Sbjct: 184 PSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPP 242
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Length = 328 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 27/175 (15%), Positives = 50/175 (28%), Gaps = 24/175 (13%)
Query: 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRM 86
+ GK +Y N I+ E K L G+ P + ++ +M
Sbjct: 132 STEQMVQY--GKYVYVNCWS--YQNRILKIDTETDKVVDELTIGIQ-PTSLVMDK-YNKM 185
Query: 87 FWTELGIKPRISGASIDGK-NKFNLVDNNI---------QWPTGITIDYPSQRLYWADPK 136
+ G + + + WP+ + ++ LYW +
Sbjct: 186 WTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN-- 243
Query: 137 ARTIESINLNGKDRFVVYHTEDNGYKPYKLEV--FEDNLYFST---YRTNNILKI 186
I + + V E K Y L V +Y + Y+ I+
Sbjct: 244 -NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYR 297
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Length = 433 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 28/212 (13%), Positives = 60/212 (28%), Gaps = 28/212 (13%)
Query: 2 ASISSGNVTRVKREMNLKT--VLSNL----HDPRGVAVDWVGKNLYWTDAGGRSSNNIMV 55
+ + + V +LKT + + + + D + +Y S +I V
Sbjct: 186 SQMQANAVHVF----DLKTLAYKATVDLTGKWSKILLYDPIRDLVY---CSNWISEDISV 238
Query: 56 STLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGAS----IDGKNKFNLV 111
+ + + + P + L ++ + + SG +
Sbjct: 239 IDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK--EKL 295
Query: 112 DNNI---QWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEV 168
+ I I ++Y +D IE +L V + KP + +
Sbjct: 296 IDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDL---KEKKVQKSIPVFDKPNTIAL 352
Query: 169 FEDN--LYFSTYRTNNILKINKFGNSDFNVLA 198
D LY S N+ + +
Sbjct: 353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVY 384
|
| >2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} Length = 403 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 22/146 (15%), Positives = 33/146 (22%), Gaps = 8/146 (5%)
Query: 349 MCPCLNQGMCYPDLTHPEPTYKCHCAPSYTG----ARCESRICENKCHNGGTCIATTQTC 404
+PT S RC + C C
Sbjct: 229 FLRTNTLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQC 288
Query: 405 VCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPK-FYYGKNCQYSQC---KNYCVN 460
C G +C +C Q + EC + +C Y + N
Sbjct: 289 ACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQN 348
Query: 461 GECSITDSGPKCMCSPGYSGKKCDTC 486
+ G C +G C+ C
Sbjct: 349 QDNVYQGGGVCLDCQHHTTGINCERC 374
|
| >2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 16/128 (12%), Positives = 27/128 (21%), Gaps = 15/128 (11%)
Query: 499 CSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTS--------CAS 550
G + L+G + + C S + C
Sbjct: 260 SESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQK 319
Query: 551 LANKCTP----NYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCS 606
L Y +C EGK C L S T+ +
Sbjct: 320 LCTNAVRCQFFTYTPAQASCN--EGKGKC-YLKLSSNGSPTKILHGRGGISGYTLRLCKM 376
Query: 607 YSKQGKPV 614
++ +
Sbjct: 377 DNECTTKI 384
|
| >1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A Length = 162 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 35/171 (20%), Positives = 50/171 (29%), Gaps = 38/171 (22%)
Query: 390 KCHNGGTCIATTQT-----CVCPPGFTGDTCQQCLNLKCQN-GGVCVNKTTGLECDCPKF 443
C G +C +T CP G G C+ C + + G C C
Sbjct: 2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND- 60
Query: 444 YYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTC---------TCLNGDSG 494
C + GEC C +G CD C D
Sbjct: 61 -NIDPNAVGNCNR--LTGEC--------LKCIYNTAGFYCDRCKEGFFGNPLAPNPADKC 109
Query: 495 PKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE-CAVG 544
C C+P + ++ +C + G C+C +GR C C G
Sbjct: 110 KACACNPYGTVQQQSSCNPVTG----------QCQCLPHVSGRDCGTCDPG 150
|
| >4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Length = 375 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 24/138 (17%), Positives = 37/138 (26%), Gaps = 16/138 (11%)
Query: 357 MCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNG-----GTCIATTQTCVCPPGFT 411
+ + E + SY A + + NG C C
Sbjct: 222 LNRLNTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTY 281
Query: 412 GDTCQQCL---NLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDS 468
G C++CL N + + + L CDC ++ G C
Sbjct: 282 GVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHC----- 336
Query: 469 GPKCMCSPGYSGKKCDTC 486
C G KC+ C
Sbjct: 337 ---TNCRDNTDGAKCERC 351
|
| >4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Length = 375 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 6e-04
Identities = 33/231 (14%), Positives = 60/231 (25%), Gaps = 39/231 (16%)
Query: 342 CEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTG--ARCESRICENKCHNGGTCIA 399
C + + P + + L Y +P + R+ N+ + G +
Sbjct: 174 CTDEFSDISPLTGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVF 233
Query: 400 TTQTCVCPPGFTGDTCQQCLNLKCQNGGVCV--NKTTGLECDCPKFYYGKNCQYSQCKNY 457
+ + KC N+ L C+C YG +C+
Sbjct: 234 NEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEK------ 287
Query: 458 CVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCL--- 514
C P ++ + T + C C+ D
Sbjct: 288 ----------------CLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTG 331
Query: 515 NGGTCIPNSKNNVCKCPSQYTGRRCE-CAVGDTSCASLANKCTPNYCSNNG 564
+GG C C G +CE C + C+P ++
Sbjct: 332 HGGHC--------TNCRDNTDGAKCERCRENFFRLGN-TEACSPAAAHHHH 373
|
| >1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 20/114 (17%), Positives = 32/114 (28%), Gaps = 20/114 (17%)
Query: 418 CLNLKCQNGGVCVNKTTG-LECDCPKFYYGKNCQYSQCKNYCVNGECS---ITDSGPKCM 473
C C+ C C C + + + +C+ +C C ++ C
Sbjct: 7 CFRANCEYQ--CQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQASCE 64
Query: 474 CSPGYSGKKCDTCT--------------CLNGDSGPKCMCSPGYSGKKCDTCTC 513
C GY CT C N +C+C P + C
Sbjct: 65 CPEGYILDDGFICTDIDECENGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 118
|
| >1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 8e-04
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 369 YKCHCAPSYTGARCESRICENKCHNGG---TCIATTQ-TCVCPPGFTGDTCQQCLNL-KC 423
Y C CA + E C+ C+ C TQ +C CP G+ D C ++ +C
Sbjct: 24 YLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQASCECPEGYILDDGFICTDIDEC 83
Query: 424 QNGG----VCVNKTTGLECDCPKFYYG 446
+NGG VC N EC C
Sbjct: 84 ENGGFCSGVCHNLPGTFECICGPDSAL 110
|
| >4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A* Length = 267 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 3e-04
Identities = 26/193 (13%), Positives = 49/193 (25%), Gaps = 43/193 (22%)
Query: 368 TYKCHCAPSYTGARCESRI--CENK-------CHNGGTCIATTQTCVCPPGFTGDTCQQC 418
TY + G + EN+ GG + G
Sbjct: 52 TYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVL---------GARDKQNIVA 102
Query: 419 LNLKCQNGGVCVNKTTGLECDCPKFYYGKNC---------QYSQCKNYCVN-GECSITDS 468
+++K +GG + TT + P + + Q+ + G +
Sbjct: 103 VSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTR 162
Query: 469 GPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKK-------------CDTCTCLN 515
G + + + D L+G G+ G T
Sbjct: 163 GKQNVINVDAKSN--DGGKTLSGTMTYNGEGPIGFRGTLTSPDTYTVENQWGGSTAPWNP 220
Query: 516 GGTCIPNSKNNVC 528
GG + ++N
Sbjct: 221 GGFWMIGARNGQN 233
|
| >3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster} Length = 58 | Back alignment and structure |
|---|
Score = 38.0 bits (88), Expect = 5e-04
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 351 PCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESR 385
CLN C+ P Y C CA + G RCE +
Sbjct: 15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 5e-04
Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 19/166 (11%)
Query: 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMV-STLEGRKKRTLLNTGLNEPYDIALEPLSGRM 86
P G + G +Y +A SN++ + T T + G + P +A+ P G+
Sbjct: 34 PMGAVISPDGTKVYVANAH---SNDVSIIDTATNNVIAT-VPAGSS-PQGVAVSP-DGKQ 87
Query: 87 FWTELGIKPRISGASIDGKNKFNLVDNNI---QWPTGITIDYPSQRLYWADPKARTIESI 143
+ +S ID + N V + + P G+ + ++LY + +T+ I
Sbjct: 88 VYVTNMASSTLS--VIDTTS--NTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVI 143
Query: 144 NLNGKDRFVVYHTEDNGYKPYKLEVFEDN--LYFSTYRTNNILKIN 187
N V +T G P + V D +Y + + + +I I+
Sbjct: 144 NT---VTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVID 186
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 6e-04
Identities = 27/218 (12%), Positives = 50/218 (22%), Gaps = 39/218 (17%)
Query: 3 SISSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLY-WTDAGGRSSNNIMVSTLEGR 61
V+ TV S L R + ++ D N + T E
Sbjct: 165 DFEKEYVS---------TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG 215
Query: 62 KKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDN-NIQWPTG 120
K T P++G +++ ++ + L + W
Sbjct: 216 FKVITELTKGQNCNGAETHPINGELYFNSWN-AGQVFRYDFTTQETTPLFTIQDSGWEFH 274
Query: 121 ITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNG-----------------YKP 163
I Y I + + K + + G + P
Sbjct: 275 IQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAP 334
Query: 164 YKLEVF----------EDNLYFSTYRTNNILKINKFGN 191
+ E + YF + I + G
Sbjct: 335 RQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGR 372
|
| >1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A Length = 53 | Back alignment and structure |
|---|
Score = 37.1 bits (86), Expect = 6e-04
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 633 AHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQT 670
+C NGG C ++ C C GY+G RCQT
Sbjct: 11 DGYCLNGGVC----MHIESLDSYTCNCVIGYSGDRCQT 44
|
| >2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 7e-04
Identities = 30/153 (19%), Positives = 42/153 (27%), Gaps = 35/153 (22%)
Query: 387 CENKCHNGGTCIATTQTCVCPPGFTG---------------DTCQQCLNLKCQNGGVCVN 431
C C +C+ T C C PGF+ + C + C C N
Sbjct: 5 CARWCPQDSSCVNAT-ACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWN 63
Query: 432 KTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCM----CSPGYSGKKCDT-C 486
+C C Y + + +S C CS G CD+
Sbjct: 64 TEGSYDCVCSPGYEPVS-----------GAKTFKNESENTCQDVDECSSGQHQ--CDSST 110
Query: 487 TCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTC 519
C N C C PG+ + C
Sbjct: 111 VCFNTVGSYSCRCRPGWKPRH-GIPNNQKDTVC 142
|
| >1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39 | Back alignment and structure |
|---|
Score = 36.7 bits (86), Expect = 7e-04
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 382 CESRICENKCHNGGTCIATTQ--TCVCPPGFTGDTCQ 416
CES N C NGG+C C CP GF G C+
Sbjct: 6 CES----NPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 713 | |||
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 100.0 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 100.0 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 100.0 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 100.0 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 100.0 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 100.0 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 100.0 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 100.0 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.94 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.94 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.94 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.93 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.93 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.93 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.93 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.89 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.88 | |
| 2ygq_A | 324 | WIF-1, WNT inhibitory factor 1; signaling protein, | 99.83 | |
| 4fbr_A | 267 | Lectin, myxobacterial hemagglutinin; beta-barrel, | 99.82 | |
| 2ygq_A | 324 | WIF-1, WNT inhibitory factor 1; signaling protein, | 99.81 | |
| 4fbr_A | 267 | Lectin, myxobacterial hemagglutinin; beta-barrel, | 99.78 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.78 | |
| 1z1y_A | 186 | Ookinete surface protein PVS25; four EGF-like doma | 99.77 | |
| 2vj2_A | 169 | Jagged-1; signalling, polymorphism, glycoprotein, | 99.76 | |
| 2vj2_A | 169 | Jagged-1; signalling, polymorphism, glycoprotein, | 99.75 | |
| 2vj3_A | 135 | Neurogenic locus notch homolog protein 1; transcri | 99.75 | |
| 2vj3_A | 135 | Neurogenic locus notch homolog protein 1; transcri | 99.74 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.74 | |
| 1z1y_A | 186 | Ookinete surface protein PVS25; four EGF-like doma | 99.74 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.72 | |
| 3fcs_B | 690 | Integrin beta-3; beta propeller, rossmann fold, EG | 99.71 | |
| 4d90_A | 143 | EGF-like repeat and discoidin I-like domain-conta | 99.68 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.68 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.67 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.67 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.67 | |
| 4d90_A | 143 | EGF-like repeat and discoidin I-like domain-conta | 99.67 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.66 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.64 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 99.64 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.62 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.61 | |
| 3fcs_B | 690 | Integrin beta-3; beta propeller, rossmann fold, EG | 99.6 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.59 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.59 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 99.58 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.58 | |
| 2gy5_A | 423 | Angiopoietin-1 receptor; ligand-binding domain, tr | 99.58 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.57 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.56 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.56 | |
| 3k6s_B | 687 | Integrin beta-2; cell receptor, adhesion molecule, | 99.52 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.5 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.5 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.49 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.47 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.47 | |
| 2gy5_A | 423 | Angiopoietin-1 receptor; ligand-binding domain, tr | 99.46 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.44 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.44 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.43 | |
| 2bou_A | 143 | EGF-like module containing mucin-like hormone rece | 99.43 | |
| 1yo8_A | 634 | Thrombospondin-2; EGF, Ca(2+)-binding domains, lec | 99.42 | |
| 2bou_A | 143 | EGF-like module containing mucin-like hormone rece | 99.41 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.41 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.4 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.39 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.38 | |
| 3k6s_B | 687 | Integrin beta-2; cell receptor, adhesion molecule, | 99.37 | |
| 4aqs_A | 525 | Laminin subunit beta-1; cell adhesion; HET: NAG BM | 99.36 | |
| 1yo8_A | 634 | Thrombospondin-2; EGF, Ca(2+)-binding domains, lec | 99.34 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.34 | |
| 4aqs_A | 525 | Laminin subunit beta-1; cell adhesion; HET: NAG BM | 99.34 | |
| 1dx5_I | 118 | Thrombomodulin; serine proteinase, EGF-like domain | 99.32 | |
| 1uzk_A | 162 | Fibrillin-1; glycoprotein, extra-cellular matrix, | 99.31 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.3 | |
| 1uzk_A | 162 | Fibrillin-1; glycoprotein, extra-cellular matrix, | 99.3 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.3 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.29 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.27 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.27 | |
| 1tpg_A | 91 | T-plasminogen activator F1-G; plasminogen activati | 99.25 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.24 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 99.24 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.24 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.22 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.21 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.2 | |
| 1dx5_I | 118 | Thrombomodulin; serine proteinase, EGF-like domain | 99.19 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.18 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.17 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.16 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.16 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.15 | |
| 1tpg_A | 91 | T-plasminogen activator F1-G; plasminogen activati | 99.15 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.14 | |
| 2w86_A | 147 | Fibrillin-1, fibrillin1; phosphoprotein, EGF-like | 99.13 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.09 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.09 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.09 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.08 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.08 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 99.06 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.05 | |
| 2w86_A | 147 | Fibrillin-1, fibrillin1; phosphoprotein, EGF-like | 99.05 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.04 | |
| 1aut_L | 114 | Activated protein C; serine proteinase, plasma cal | 99.03 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.02 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.02 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.01 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 98.98 | |
| 1klo_A | 162 | Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: | 98.96 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 98.96 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.96 | |
| 1emn_A | 82 | Fibrillin; extracellular matrix, calcium-binding, | 98.95 | |
| 1x7a_L | 146 | Coagulation factor IX, light chain; inhibition, bl | 98.95 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 98.89 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 98.89 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 98.88 | |
| 2p28_B | 217 | Integrin beta-2; hybrid domain, PSI domain, I-EGF | 98.87 | |
| 1klo_A | 162 | Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: | 98.86 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.86 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.85 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.84 | |
| 2c4f_L | 142 | Coagulation factor VII precursor; blood coagulatio | 98.82 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 98.82 | |
| 1lmj_A | 86 | Fibrillin 1; EGF, calcium, microfibril, neonatal, | 98.81 | |
| 1nfu_B | 195 | Coagulation factor XA, light chain; hydrolase; HET | 98.8 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.8 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.8 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.79 | |
| 1emn_A | 82 | Fibrillin; extracellular matrix, calcium-binding, | 98.78 | |
| 1aut_L | 114 | Activated protein C; serine proteinase, plasma cal | 98.77 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.77 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.77 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 98.76 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 98.76 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.75 | |
| 2vh0_B | 134 | Activated factor XA light chain; serine protease, | 98.72 | |
| 1x7a_L | 146 | Coagulation factor IX, light chain; inhibition, bl | 98.72 | |
| 2p28_B | 217 | Integrin beta-2; hybrid domain, PSI domain, I-EGF | 98.72 | |
| 2c4f_L | 142 | Coagulation factor VII precursor; blood coagulatio | 98.71 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.71 | |
| 1z6c_A | 87 | Vitamin K-dependent protein S; EGF module, blood c | 98.71 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.69 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.69 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.68 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.68 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.67 | |
| 1nfu_B | 195 | Coagulation factor XA, light chain; hydrolase; HET | 98.64 | |
| 1lmj_A | 86 | Fibrillin 1; EGF, calcium, microfibril, neonatal, | 98.64 | |
| 2w2n_E | 107 | LDL receptor, low-density lipoprotein receptor; hy | 98.63 | |
| 2vh0_B | 134 | Activated factor XA light chain; serine protease, | 98.62 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 98.62 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.59 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 98.59 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.59 | |
| 2w2n_E | 107 | LDL receptor, low-density lipoprotein receptor; hy | 98.58 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.58 | |
| 1z6c_A | 87 | Vitamin K-dependent protein S; EGF module, blood c | 98.58 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.54 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.53 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.53 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.5 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.49 | |
| 3h5c_B | 317 | Vitamin K-dependent protein Z; protein Z-protein Z | 98.48 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.48 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.47 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.46 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.46 | |
| 3h5c_B | 317 | Vitamin K-dependent protein Z; protein Z-protein Z | 98.44 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 98.43 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.37 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.36 | |
| 3u7u_G | 55 | Neuregulin 1; signaling protein, transferase-trans | 98.31 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.3 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.29 | |
| 1edm_B | 39 | Factor IX; epidermal growth factor, EGF, calcium- | 98.2 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.2 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.19 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.14 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.14 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.07 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.04 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.03 | |
| 3u7u_G | 55 | Neuregulin 1; signaling protein, transferase-trans | 98.01 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 97.98 | |
| 3zyj_B | 426 | Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA | 97.91 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 97.91 | |
| 1edm_B | 39 | Factor IX; epidermal growth factor, EGF, calcium- | 97.88 | |
| 3zyj_B | 426 | Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA | 97.87 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 97.81 | |
| 3ca7_A | 52 | Protein spitz; argos, EGF, developmental protein, | 97.74 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 97.73 | |
| 2k2s_B | 61 | Micronemal protein 6; microneme protein complex, c | 97.71 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 97.71 | |
| 1egf_A | 53 | Epidermal growth factor; NMR {Mus musculus} SCOP: | 97.71 | |
| 3ca7_A | 52 | Protein spitz; argos, EGF, developmental protein, | 97.7 | |
| 1a3p_A | 45 | Epidermal growth factor; disulfide connectivities, | 97.68 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 97.61 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 97.6 | |
| 1a3p_A | 45 | Epidermal growth factor; disulfide connectivities, | 97.59 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 97.56 | |
| 2k2s_B | 61 | Micronemal protein 6; microneme protein complex, c | 97.56 | |
| 1k36_A | 46 | Epiregulin; EGF-like fold, hormone/growth factor c | 97.54 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 97.53 | |
| 1egf_A | 53 | Epidermal growth factor; NMR {Mus musculus} SCOP: | 97.51 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 97.48 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.46 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.44 | |
| 1hae_A | 63 | Heregulin-alpha; growth factor; NMR {Homo sapiens} | 97.41 | |
| 1hae_A | 63 | Heregulin-alpha; growth factor; NMR {Homo sapiens} | 97.39 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 97.38 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.37 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.35 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.33 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.33 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 97.33 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 97.28 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 97.27 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 97.25 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 97.24 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 97.23 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.2 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 97.14 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 97.14 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 97.12 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.11 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.11 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.09 | |
| 1k36_A | 46 | Epiregulin; EGF-like fold, hormone/growth factor c | 97.07 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.05 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.05 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 97.04 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 97.03 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 97.02 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.01 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 97.01 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 96.99 | |
| 1ob1_C | 99 | Major merozoite surface protein; immune system, im | 96.98 | |
| 1apq_A | 53 | Complement protease C1R; EGF, calcium binding, ser | 96.96 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 96.96 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 96.96 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 96.95 | |
| 1nql_B | 53 | Epidermal growth factor; cell surface receptor, ty | 96.95 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 96.94 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 96.92 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 96.91 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 96.91 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 96.91 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 96.88 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.88 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 96.88 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 96.84 | |
| 1nql_B | 53 | Epidermal growth factor; cell surface receptor, ty | 96.83 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 96.78 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 96.75 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 96.73 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 96.71 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 96.69 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 96.69 | |
| 2y38_A | 403 | Laminin subunit alpha-5; structural protein, cell | 96.69 | |
| 1n1i_A | 105 | Merozoite surface protein-1; MSP1, malaria, surfac | 96.69 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.68 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 96.65 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 96.64 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 96.64 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 96.63 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 96.58 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 96.58 | |
| 2fd6_A | 122 | Urokinase-type plasminogen activator; UPAR, ATF, A | 96.58 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 96.56 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 96.54 | |
| 2jkh_L | 55 | Factor X light chain; plasma, calcium, zymogen, se | 96.51 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 96.5 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 96.46 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.43 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 96.43 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 96.42 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 96.41 | |
| 2fd6_A | 122 | Urokinase-type plasminogen activator; UPAR, ATF, A | 96.39 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 96.34 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 96.32 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 96.32 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 96.26 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 96.25 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 96.24 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 96.24 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 96.22 | |
| 1ob1_C | 99 | Major merozoite surface protein; immune system, im | 96.21 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 96.21 | |
| 1kli_L | 69 | Factor VIIA; extrinsic coagulation pathway, serine | 96.18 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 96.18 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.16 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 96.15 | |
| 1g1s_A | 162 | P-selectin; selectin, lectin, EGF, sulphated, SLEX | 96.1 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 96.1 | |
| 2kl7_A | 71 | Fibulin-4; secreted, calcium, disease mutation, di | 96.08 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 96.05 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 96.03 | |
| 1g1s_A | 162 | P-selectin; selectin, lectin, EGF, sulphated, SLEX | 95.99 | |
| 2ygo_A | 188 | WIF-1, WNT inhibitory factor 1; signaling protein, | 95.99 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 95.98 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 95.93 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 95.89 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 95.88 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.83 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 95.82 | |
| 4aqt_A | 375 | Laminin subunit gamma-1; cell adhesion; HET: NAG B | 95.81 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 95.79 | |
| 2y38_A | 403 | Laminin subunit alpha-5; structural protein, cell | 95.76 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 95.76 | |
| 3ltf_D | 58 | Protein spitz; receptor-ligand complex ectodomain | 95.75 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 95.75 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 95.72 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 95.72 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 95.69 | |
| 1apq_A | 53 | Complement protease C1R; EGF, calcium binding, ser | 95.68 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 95.65 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 95.63 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 95.61 | |
| 3ltf_D | 58 | Protein spitz; receptor-ligand complex ectodomain | 95.59 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 95.56 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 95.51 | |
| 2ygo_A | 188 | WIF-1, WNT inhibitory factor 1; signaling protein, | 95.5 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 95.47 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 95.44 | |
| 2jkh_L | 55 | Factor X light chain; plasma, calcium, zymogen, se | 95.41 | |
| 1gl4_A | 285 | Nidogen-1, entactin; immunoglobulin-like domain, e | 95.39 | |
| 1kig_L | 51 | Factor XA; glycoprotein, serine protease, plasma, | 95.38 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 95.36 | |
| 1n1i_A | 105 | Merozoite surface protein-1; MSP1, malaria, surfac | 95.36 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 95.25 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 95.25 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 95.24 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 95.24 | |
| 2kl7_A | 71 | Fibulin-4; secreted, calcium, disease mutation, di | 95.2 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 95.17 | |
| 4aqt_A | 375 | Laminin subunit gamma-1; cell adhesion; HET: NAG B | 95.13 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 95.1 | |
| 3e50_C | 50 | Protransforming growth factor alpha; IDE, TGF-alph | 95.09 | |
| 1iox_A | 50 | Betacellulin; EGF-like fold, hormone/growth factor | 95.06 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 95.06 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 95.04 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 95.02 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 95.02 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 94.96 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 94.91 | |
| 2rnl_A | 50 | Amphiregulin; AR, colorectum cell-derived growth f | 94.91 | |
| 1gl4_A | 285 | Nidogen-1, entactin; immunoglobulin-like domain, e | 94.88 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 94.85 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 94.84 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 94.8 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 94.78 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 94.7 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 94.67 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 94.65 | |
| 1q4g_A | 553 | Prostaglandin G/H synthase 1; cyclooxygenase, non- | 94.63 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 94.58 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 94.52 | |
| 2wph_E | 59 | Coagulation factor IXA light chain; serine proteas | 94.45 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 94.35 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 94.34 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 94.33 | |
| 2bz6_L | 53 | Blood coagulation factor VIIA; serine protease, en | 94.27 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 94.24 | |
| 2i9a_A | 145 | Urokinase-type plasminogen activator; growth facto | 94.22 | |
| 2i9a_A | 145 | Urokinase-type plasminogen activator; growth facto | 94.21 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 94.21 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 94.2 | |
| 3nt1_A | 587 | Prostaglandin-endoperoxide synthase 2; prostagland | 94.17 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 94.15 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 94.11 | |
| 1xdt_R | 79 | Hbegf, heparin-binding epidermal growth factor; co | 94.1 | |
| 3cfw_A | 164 | L-selectin; EGF, cell adhesion, EGF-like domain, g | 94.02 | |
| 2e26_A | 725 | Reelin, reeler protein; signaling protein; HET: NA | 94.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 93.94 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 93.9 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 93.87 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 93.87 | |
| 3e50_C | 50 | Protransforming growth factor alpha; IDE, TGF-alph | 93.81 | |
| 2rnl_A | 50 | Amphiregulin; AR, colorectum cell-derived growth f | 93.76 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 93.75 | |
| 3cfw_A | 164 | L-selectin; EGF, cell adhesion, EGF-like domain, g | 93.74 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 93.72 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 93.71 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 93.71 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 93.62 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 93.59 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 93.49 | |
| 1kli_L | 69 | Factor VIIA; extrinsic coagulation pathway, serine | 93.48 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 93.45 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 93.4 | |
| 1iox_A | 50 | Betacellulin; EGF-like fold, hormone/growth factor | 93.37 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 93.34 | |
| 1q4g_A | 553 | Prostaglandin G/H synthase 1; cyclooxygenase, non- | 93.09 | |
| 1kig_L | 51 | Factor XA; glycoprotein, serine protease, plasma, | 92.93 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 92.86 | |
| 3nt1_A | 587 | Prostaglandin-endoperoxide synthase 2; prostagland | 92.71 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 92.53 | |
| 2p26_A | 280 | Integrin beta-2; hybrid domain, PSI domain, I-EGF | 92.49 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 92.46 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 92.45 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 92.44 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 92.43 | |
| 2p26_A | 280 | Integrin beta-2; hybrid domain, PSI domain, I-EGF | 92.27 | |
| 1g1t_A | 157 | E-selectin; EGF, adhesion molecule, SLEX, immune s | 92.21 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 92.11 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 92.08 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 92.06 | |
| 2e26_A | 725 | Reelin, reeler protein; signaling protein; HET: NA | 92.03 | |
| 2wph_E | 59 | Coagulation factor IXA light chain; serine proteas | 91.88 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 91.71 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 91.51 | |
| 1szb_A | 170 | Mannose binding lectin-associated serine protease- | 91.48 | |
| 1xdt_R | 79 | Hbegf, heparin-binding epidermal growth factor; co | 91.32 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 91.3 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 91.21 | |
| 2bz6_L | 53 | Blood coagulation factor VIIA; serine protease, en | 90.75 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 90.64 | |
| 1g1t_A | 157 | E-selectin; EGF, adhesion molecule, SLEX, immune s | 90.63 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 90.46 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 89.62 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 89.6 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 89.18 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 89.1 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 88.93 | |
| 3asi_A | 410 | Neurexin-1-alpha; beta-sandwich, cell adhesion, sy | 88.67 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 88.66 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 88.6 | |
| 1b9w_A | 95 | Protein (merozoite surface protein 1); MSP-1, cand | 88.54 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 88.38 | |
| 2ks1_B | 44 | Epidermal growth factor receptor; ERBB1, ERBB2, tr | 88.21 | |
| 3f6k_A | 685 | Sortilin; protein sorting receptor, 10-bladed beta | 88.19 | |
| 1szb_A | 170 | Mannose binding lectin-associated serine protease- | 88.16 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 88.04 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 87.96 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 87.88 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 87.67 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 87.28 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 87.18 | |
| 1nzi_A | 159 | Complement C1S component; calcium, innate immunity | 87.0 | |
| 3a0f_A | 763 | Xyloglucanase; beta-propeller, hydrolase; 2.50A {G | 86.08 | |
| 2l2t_A | 44 | Receptor tyrosine-protein kinase ERBB-4; transmemb | 85.87 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 85.83 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 84.3 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 84.04 | |
| 2ks1_B | 44 | Epidermal growth factor receptor; ERBB1, ERBB2, tr | 84.0 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 83.71 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 83.29 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 83.24 | |
| 3asi_A | 410 | Neurexin-1-alpha; beta-sandwich, cell adhesion, sy | 83.2 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 82.67 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 81.38 | |
| 2cn3_A | 737 | Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc | 80.98 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 80.87 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 80.35 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 80.14 | |
| 3qcw_A | 1245 | Neurexin-1-alpha; synaptic adhesion molecule, cell | 80.05 |
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-38 Score=325.29 Aligned_cols=242 Identities=36% Similarity=0.725 Sum_probs=218.7
Q ss_pred CCcccCCceeEEEccCcc---cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceE
Q psy6570 1 MASISSGNVTRVKREMNL---KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDI 77 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~~---~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~i 77 (713)
++|+..++|+|+++++.. .++...+..|.|||+||.+++|||+|. ..++|.+++++|+.+++++...+..|++|
T Consensus 51 w~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~---~~~~I~~~~~dG~~~~~l~~~~~~~P~gi 127 (318)
T 3sov_A 51 WSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDS---ETNRIEVSNLDGSLRKVLFWQELDQPRAI 127 (318)
T ss_dssp EEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred EEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEEC---CCCEEEEEECCCCcEEEEEeCCCCCccEE
Confidence 468889999999998853 344678899999999999999999999 78999999999999888887888999999
Q ss_pred EEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecC
Q psy6570 78 ALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTE 157 (713)
Q Consensus 78 avD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~ 157 (713)
||||.+|+|||+|++..++|+++++||+.+++++...+.+|+|||||+.+++|||+|+..++|++++++|+.++++...
T Consensus 128 avdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~- 206 (318)
T 3sov_A 128 ALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG- 206 (318)
T ss_dssp EEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-
T ss_pred EEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC-
Confidence 9999999999999875559999999999999998888999999999999999999999999999999999999888753
Q ss_pred CCCccceeeeeeCCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEEeeccccCCccCCCCCC--CCCCCCeee
Q psy6570 158 DNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDK--PCHQSALCI 235 (713)
Q Consensus 158 ~~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~~~~~C~~~--~C~~~~~C~ 235 (713)
.+.+|+||+++++.|||+|+.+++|.++++..+.....+...+..|++|+++|+.+|+ ...|+|+.+ .| +++|+
T Consensus 207 -~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v~~~~~q~-~~~n~C~~~ng~C--s~~C~ 282 (318)
T 3sov_A 207 -SLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQP-NATNPCGIDNGGC--SHLCL 282 (318)
T ss_dssp -CCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECCCSSCCCEEEECGGGSC-CCCCTTTTTGGGC--SSEEE
T ss_pred -CCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEeCCCCCCcEEEEecccccc-ccccccccCCCCc--ceEEe
Confidence 3789999999999999999999999999998787778888888999999999999995 458999865 57 89999
Q ss_pred ccCC--CceeeeCCCCc
Q psy6570 236 NLPS--SHTCLCPDHLT 250 (713)
Q Consensus 236 ~~~g--~~~C~C~~G~~ 250 (713)
..++ +|+|.||+||.
T Consensus 283 ~~~~~~~~~C~C~~g~~ 299 (318)
T 3sov_A 283 MSPVKPFYQCACPTGVK 299 (318)
T ss_dssp ECSSTTSEEEECSTTCC
T ss_pred cCCCCCCeEEECCCCCE
Confidence 9987 79999999998
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=335.22 Aligned_cols=244 Identities=34% Similarity=0.699 Sum_probs=218.2
Q ss_pred CCcccCCceeEEEccCc-----ccEE-ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCc
Q psy6570 1 MASISSGNVTRVKREMN-----LKTV-LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEP 74 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~-----~~~~-~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p 74 (713)
++|+.+++|+++++++. .+++ ...+..|.||||||.+++|||+|. ..++|.+++++|+.+++++...+..|
T Consensus 128 wsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~---~~~~I~~~~~~g~~~~~l~~~~~~~P 204 (400)
T 3p5b_L 128 WSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS---VLGTVSVADTKGVKRKTLFRENGSKP 204 (400)
T ss_dssp EEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEECTTTCSEEEEEECSSCCE
T ss_pred EEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEEC---CCCeEEEEeCCCCceEEEEeCCCCCc
Confidence 46788899999998872 2333 448899999999999999999999 78999999999999999988889999
Q ss_pred ceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEE
Q psy6570 75 YDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVY 154 (713)
Q Consensus 75 ~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~ 154 (713)
++|||||.+++|||||++..++|+++++||+.+++++...+.+|+|||||+.+++|||+|...++|++++++|..++++.
T Consensus 205 ~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~ 284 (400)
T 3p5b_L 205 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 284 (400)
T ss_dssp EEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEE
T ss_pred ceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEE
Confidence 99999999999999999865699999999999999998889999999999999999999999999999999999998888
Q ss_pred ecCCCCccceeeeeeCCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEEeeccccCCccCCCCC-----CCCC
Q psy6570 155 HTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDD-----KPCH 229 (713)
Q Consensus 155 ~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~~~~~C~~-----~~C~ 229 (713)
.....+.+|++|++++++|||+||.+++|+++++..+....++..++..|++|+++|+.+|+ ...|+|.. ..|
T Consensus 285 ~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~~~~~qp-~~~n~c~~~~~~ng~C- 362 (400)
T 3p5b_L 285 EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQP-RGVNWCERTTLSNGGC- 362 (400)
T ss_dssp ECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEESGGGSC-CCCCSSSSSSSGGGGC-
T ss_pred eCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEEeeccCC-CCCCccccccCCCcCc-
Confidence 76556889999999999999999999999999998888888888889999999999999995 56799963 357
Q ss_pred CCCeeeccCC------CceeeeCCCCc
Q psy6570 230 QSALCINLPS------SHTCLCPDHLT 250 (713)
Q Consensus 230 ~~~~C~~~~g------~~~C~C~~G~~ 250 (713)
.++|+..+. +|+|.||+||.
T Consensus 363 -~~lC~~~~~~~~~~~~~~C~C~~g~~ 388 (400)
T 3p5b_L 363 -QYLCLPAPQINPHSPKFTCACPDGML 388 (400)
T ss_dssp -SSEEEECCCSSTTCCSEEEECCTTCE
T ss_pred -CCeecCCCcccCCCCCeeEECCCCCE
Confidence 899998875 69999999998
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=356.92 Aligned_cols=253 Identities=33% Similarity=0.676 Sum_probs=223.7
Q ss_pred CCcccCCceeEEEccCc-----ccEEe-cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCc
Q psy6570 1 MASISSGNVTRVKREMN-----LKTVL-SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEP 74 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~-----~~~~~-~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p 74 (713)
|+|..+++|+++++++. .++++ ..+..|.||||||.+++|||+|. ..++|++++++|+.+++|+...+..|
T Consensus 440 ~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~---~~~~I~v~~ldG~~~~~l~~~~l~~P 516 (791)
T 3m0c_C 440 WSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS---VLGTVSVADTKGVKRKTLFRENGSKP 516 (791)
T ss_dssp EEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET---TTTEEEEEETTSSSEEEEEECTTCCE
T ss_pred EeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEec---CCCeEEEEeCCCCeEEEEEeCCCCCc
Confidence 46778889999998863 23444 48999999999999999999999 78999999999999999998889999
Q ss_pred ceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEE
Q psy6570 75 YDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVY 154 (713)
Q Consensus 75 ~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~ 154 (713)
++|||||.+++|||||++..++|++++|||+.+++++...+.+|+|||||+.+++|||+|...++|++++++|..+++++
T Consensus 517 ~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~ 596 (791)
T 3m0c_C 517 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 596 (791)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred ceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEe
Confidence 99999999999999999875599999999999999998899999999999999999999999999999999999999988
Q ss_pred ecCCCCccceeeeeeCCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEEeeccccCCccCCCCC-----CCCC
Q psy6570 155 HTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDD-----KPCH 229 (713)
Q Consensus 155 ~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~~~~~C~~-----~~C~ 229 (713)
.....+.+|++|++++++|||+|+.+++|+++++..+..+.++...+..|++|+|+|+.+|+ ...|+|.. ..|
T Consensus 597 ~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~v~h~~~Qp-~~~N~C~~~~~~ng~C- 674 (791)
T 3m0c_C 597 EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQP-RGVNWCERTTLSNGGC- 674 (791)
T ss_dssp ECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGGSC-CCCCTTTSSSSGGGGC-
T ss_pred cCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEeeeccccCC-CCCCcccccCCCCcCc-
Confidence 76556889999999999999999999999999999898888888889999999999999994 56899986 357
Q ss_pred CCCeeeccCC------CceeeeCCCCccccccCCCCCc
Q psy6570 230 QSALCINLPS------SHTCLCPDHLTEELNVTSGKMS 261 (713)
Q Consensus 230 ~~~~C~~~~g------~~~C~C~~G~~~~~~~~~~~c~ 261 (713)
+++|+..|+ +|+|+||.||. +..+..+|.
T Consensus 675 -shlCl~~p~~~~~~~~~~C~Cp~g~~--L~~d~~tC~ 709 (791)
T 3m0c_C 675 -QYLCLPAPQINPHSPKFTCACPDGML--LARDMRSCL 709 (791)
T ss_dssp -SSEEEECCCCSTTCCSEEEECCTTCE--ECTTSSCEE
T ss_pred -CeeecCCCCcCCCCCCceeECCCCCE--ECCCCCcCC
Confidence 899998775 69999999998 334445553
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-37 Score=325.72 Aligned_cols=242 Identities=35% Similarity=0.719 Sum_probs=219.5
Q ss_pred CCcccCCceeEEEccCcc-cE-EecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEE
Q psy6570 1 MASISSGNVTRVKREMNL-KT-VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIA 78 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~~-~~-~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia 78 (713)
++|+..++|+|+++++.. +. +..++..|.|||+||.+++|||+|. ..++|.+++++|+.+++++...+..|++||
T Consensus 89 ~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~---~~~~I~~~~~dG~~~~~l~~~~l~~P~~ia 165 (349)
T 3v64_C 89 WSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDS---GTSRIEVANLDGAHRKVLLWQSLEKPRAIA 165 (349)
T ss_dssp EEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECTTCSCEEEEE
T ss_pred EEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcC---CCCeEEEEcCCCCceEEEEeCCCCCcceEE
Confidence 467888999999999854 33 3567889999999999999999999 788999999999998888877889999999
Q ss_pred EcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCC
Q psy6570 79 LEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTED 158 (713)
Q Consensus 79 vD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~ 158 (713)
|||.+++|||+|++..++|+|+++||+.+++++...+.+|+|||||+.+++|||+|+..++|++++++|+.++++...
T Consensus 166 vdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~-- 243 (349)
T 3v64_C 166 LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ-- 243 (349)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--
T ss_pred EecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeC--
Confidence 999999999999987349999999999999888878999999999999999999999999999999999988877654
Q ss_pred CCccceeeeeeCCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEEeeccccCCccCCCCCCC--CCCCCeeec
Q psy6570 159 NGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKP--CHQSALCIN 236 (713)
Q Consensus 159 ~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~~~~~C~~~~--C~~~~~C~~ 236 (713)
.+.+|+||++++++|||+|+.+++|.++++..+....++...+..|.+|+++|+.+|+ ...|+|..++ | +++|+.
T Consensus 244 ~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~qp-~~~n~C~~~~g~C--~~lCl~ 320 (349)
T 3v64_C 244 GLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQP-AGKNRCGDNNGGC--THLCLP 320 (349)
T ss_dssp SCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEECGGGSC-CCCCTTTTGGGGC--SSEEEC
T ss_pred CCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEEEccccCc-cccCcccCCCCCc--ccEeec
Confidence 3679999999999999999999999999988888888888889999999999999994 4689999876 7 899999
Q ss_pred cCCCceeeeCCCCc
Q psy6570 237 LPSSHTCLCPDHLT 250 (713)
Q Consensus 237 ~~g~~~C~C~~G~~ 250 (713)
.+++|+|.||+||.
T Consensus 321 ~~~~~~C~C~~g~~ 334 (349)
T 3v64_C 321 SGQNYTCACPTGFR 334 (349)
T ss_dssp CTTSCEEECCTTEE
T ss_pred CCCCCeeECCCCCc
Confidence 99999999999997
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-37 Score=318.12 Aligned_cols=244 Identities=34% Similarity=0.707 Sum_probs=214.8
Q ss_pred CCcccCCceeEEEccC----cc-cEEe-cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCc
Q psy6570 1 MASISSGNVTRVKREM----NL-KTVL-SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEP 74 (713)
Q Consensus 1 vad~~~~~I~~~~~~~----~~-~~~~-~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p 74 (713)
++|...++|+++++++ .. ++++ ..+..|.|||+||.+++|||+|. ..++|.+++++|+.+++++...+..|
T Consensus 46 ~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~---~~~~I~~~~~~g~~~~~~~~~~~~~P 122 (316)
T 1ijq_A 46 WSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS---VLGTVSVADTKGVKRKTLFRENGSKP 122 (316)
T ss_dssp EEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET---TTTEEEEEETTSSSEEEEEECTTCCE
T ss_pred EEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEEC---CCCEEEEEeCCCCceEEEEECCCCCc
Confidence 4677889999999887 22 3333 46789999999999999999999 78999999999998888887778999
Q ss_pred ceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEE
Q psy6570 75 YDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVY 154 (713)
Q Consensus 75 ~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~ 154 (713)
++|++||.+++|||+|++..++|+++++||+.+++++...+.+|+||+||+.+++|||+|...++|++++++|+.++++.
T Consensus 123 ~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~ 202 (316)
T 1ijq_A 123 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 202 (316)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred ceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEe
Confidence 99999999999999999864599999999999988887789999999999999999999999999999999999998887
Q ss_pred ecCCCCccceeeeeeCCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEEeeccccCCccCCCCCC-----CCC
Q psy6570 155 HTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDK-----PCH 229 (713)
Q Consensus 155 ~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~~~~~C~~~-----~C~ 229 (713)
.....+.+|.+|++++++|||+|+.+++|.++++..+.....+..++..|.+|+++|+.+|+ ...|+|..+ .|
T Consensus 203 ~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~~~~~p~~i~v~~~~~qp-~~~n~C~~~~~~ng~C- 280 (316)
T 1ijq_A 203 EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQP-RGVNWCERTTLSNGGC- 280 (316)
T ss_dssp ECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGGSC-CCCCTTSSSSSGGGGC-
T ss_pred ecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcceEEEecCCCCceEEEEeccccCC-cccccccccccCCCCc-
Confidence 65445789999999999999999999999999998788788888888899999999999985 467999865 47
Q ss_pred CCCeeeccC------CCceeeeCCCCc
Q psy6570 230 QSALCINLP------SSHTCLCPDHLT 250 (713)
Q Consensus 230 ~~~~C~~~~------g~~~C~C~~G~~ 250 (713)
+++|++.| ++|+|.||+||.
T Consensus 281 -s~~C~~~p~~~~~~~~~~C~C~~g~~ 306 (316)
T 1ijq_A 281 -QYLCLPAPQINPHSPKFTCACPDGML 306 (316)
T ss_dssp -SSEEEECCCCSTTCCSEEEECCTTCE
T ss_pred -CcccCCCccccCCCCCeEeeCCCCCE
Confidence 89999887 589999999997
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=326.15 Aligned_cols=244 Identities=34% Similarity=0.690 Sum_probs=220.4
Q ss_pred CCcccCCceeEEEccCcc--cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEE
Q psy6570 1 MASISSGNVTRVKREMNL--KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIA 78 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~~--~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia 78 (713)
++|+..++|+|+++++.. .++..++..|.|||+||.+++|||+|. ..++|.+++++|+.+++++..++..|++||
T Consensus 132 ~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~---~~~~I~~~~~dg~~~~~l~~~~l~~P~gia 208 (386)
T 3v65_B 132 WSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDS---GTSRIEVANLDGAHRKVLLWQSLEKPRAIA 208 (386)
T ss_dssp EEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEET---TTTEEEECBTTSCSCEEEECSSCSCEEEEE
T ss_pred EEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcC---CCCeEEEEeCCCCceEEeecCCCCCCcEEE
Confidence 467888999999999864 333567889999999999999999999 788999999999998888888899999999
Q ss_pred EcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCC
Q psy6570 79 LEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTED 158 (713)
Q Consensus 79 vD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~ 158 (713)
|||.+++|||+|++..++|+|+++||+.+++++...+.+|+|||||+.+++|||+|+..++|++++++|+.+++++..
T Consensus 209 vdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~-- 286 (386)
T 3v65_B 209 LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ-- 286 (386)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECS--
T ss_pred EEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEEC--
Confidence 999999999999987459999999999999998888999999999999999999999999999999999988877654
Q ss_pred CCccceeeeeeCCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEEeeccccCCccCCCCCCCCCCCCeeeccC
Q psy6570 159 NGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLP 238 (713)
Q Consensus 159 ~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~~~~~C~~~~C~~~~~C~~~~ 238 (713)
.+.+|+||++++++|||+||.+++|.++++..+....++...+..|.+|+++|+.+|+ ...|+|..++.+.+++|+..+
T Consensus 287 ~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~q~-~~~n~C~~~ng~C~~lCl~~~ 365 (386)
T 3v65_B 287 GLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQP-AGKNRCGDNNGGCTHLCLPSG 365 (386)
T ss_dssp SCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEESGGGSC-CCCCTTTTSCTTSSSEEECCS
T ss_pred CCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEEEchhcCc-CCcCccccCCCCCCceeeeCC
Confidence 3679999999999999999999999999988888888888889999999999999994 478999987633389999999
Q ss_pred CCceeeeCCCCc
Q psy6570 239 SSHTCLCPDHLT 250 (713)
Q Consensus 239 g~~~C~C~~G~~ 250 (713)
++|+|+||+||.
T Consensus 366 ~~~~C~C~~g~~ 377 (386)
T 3v65_B 366 QNYTCACPTGFR 377 (386)
T ss_dssp SSCEEECCTTCB
T ss_pred CCCeeECCCCCc
Confidence 999999999997
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=341.30 Aligned_cols=243 Identities=28% Similarity=0.598 Sum_probs=217.8
Q ss_pred CCcccCCceeEEEccCcc-cEE-ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEE
Q psy6570 1 MASISSGNVTRVKREMNL-KTV-LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIA 78 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~~-~~~-~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia 78 (713)
++|...++|+|+++++.. +++ ..++..|.||||||.+++|||+|. ..++|.+++++|+.+++++..++..|++||
T Consensus 365 ~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~---~~~~I~v~~~~G~~~~~l~~~~l~~P~~ia 441 (619)
T 3s94_A 365 WTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDT---GTDRIEVTRLNGTMRKILISEDLEEPRAIV 441 (619)
T ss_dssp EEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECTTCCSEEEEE
T ss_pred EEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeC---CCCcEEEEeCCCCeEEEEEECCCCCeeeEE
Confidence 467889999999999843 333 567899999999999999999999 789999999999999988888899999999
Q ss_pred EcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCC
Q psy6570 79 LEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTED 158 (713)
Q Consensus 79 vD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~ 158 (713)
|||.+|.|||||++..++|+++.|||+.+++++...+.+|+|||||+.+++|||+|...++|++++++|+.++++...
T Consensus 442 vdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~-- 519 (619)
T 3s94_A 442 LDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVED-- 519 (619)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEEC--
T ss_pred EEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEecc--
Confidence 999999999999987679999999999999998888999999999999999999999999999999999999888754
Q ss_pred CCccceeeeeeCCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEEeeccccCCccCCCCCCCCCCCCeeeccC
Q psy6570 159 NGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLP 238 (713)
Q Consensus 159 ~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~~~~~C~~~~C~~~~~C~~~~ 238 (713)
.+.+|+||++++++|||+|+..++|+++++.++ ..+++...+..+++|++++...|. ..|+|..++-+..++|++.+
T Consensus 520 ~l~~P~glav~~~~ly~tD~~~~~I~~~~k~~g-~~~~~~~~~~~~~~i~~~~~~~~~--~~~~C~~~ng~C~~~C~~~~ 596 (619)
T 3s94_A 520 KIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSA-EREVIIDQLPDLMGLKATNVHRVI--GSNPCAEENGGCSHLCLYRP 596 (619)
T ss_dssp CCCSSCCEEEETTEEEEECTTSSCEEEEESSSC-CEEEEECSCCCEEEEEEEESSCCC--CCCGGGSGGGGCSSEEEEET
T ss_pred CCCCcEEEEEECCEEEEeecCCCeEEEEEcCCC-ceEEEecCCCCCceeeeccccccc--ccccCCCCCCChhHhhccCC
Confidence 477999999999999999999999999999888 557777788899999999988763 68999865422289999999
Q ss_pred CCceeeeCCCCcc
Q psy6570 239 SSHTCLCPDHLTE 251 (713)
Q Consensus 239 g~~~C~C~~G~~~ 251 (713)
++|+|.|++||..
T Consensus 597 ~~~~C~C~~g~~l 609 (619)
T 3s94_A 597 QGLRCACPIGFEL 609 (619)
T ss_dssp TEEEEECCTTCEE
T ss_pred CCeEEECCCCCEE
Confidence 9999999999983
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-36 Score=338.75 Aligned_cols=248 Identities=35% Similarity=0.669 Sum_probs=220.7
Q ss_pred CCcccCCceeEEEccCcc-cEE-ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEE
Q psy6570 1 MASISSGNVTRVKREMNL-KTV-LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIA 78 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~~-~~~-~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia 78 (713)
++|+.+++|+|+++++.. +++ ..++..|.|||+||.+++|||+|. ..++|.+++++|+.+++++...+..|++||
T Consensus 53 wtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~---~~~~I~v~~~dG~~~~~l~~~~l~~P~~ia 129 (628)
T 4a0p_A 53 WTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADT---GTNRIEVSKLDGQHRQVLVWKDLDSPRALA 129 (628)
T ss_dssp EEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEET---TTTEEEEEETTSTTCEEEECSSCCCEEEEE
T ss_pred EEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEEC---CCCEEEEEecCCCcEEEEEeCCCCCcccEE
Confidence 467889999999999853 333 557789999999999999999999 789999999999999888878899999999
Q ss_pred EcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCC
Q psy6570 79 LEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTED 158 (713)
Q Consensus 79 vD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~ 158 (713)
|||.+|+|||||++..++|+|+++||+.+++++. .+.+|+||+||+.+++|||+|...++|++++++|..++++...
T Consensus 130 vdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~-- 206 (628)
T 4a0p_A 130 LDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADD-- 206 (628)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC--
T ss_pred EccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeecc--
Confidence 9999999999999866699999999999988875 7899999999999999999999999999999999988766543
Q ss_pred CCccceeeeeeCCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEEeeccccCCccCCCCCC--CCCCCCeeec
Q psy6570 159 NGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDK--PCHQSALCIN 236 (713)
Q Consensus 159 ~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~~~~~C~~~--~C~~~~~C~~ 236 (713)
+.+|+||++++++|||+||.+++|+++++..+...+++..++..|++|+++|+.+|+ ..|+|+.+ .| +++|++
T Consensus 207 -l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~--~~n~C~~~ng~C--~~~C~~ 281 (628)
T 4a0p_A 207 -LPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQS--GWNECASSNGHC--SHLCLA 281 (628)
T ss_dssp -CSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSC--CCCTTTTTGGGC--SSEEEE
T ss_pred -CCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccc--cceEeccCCCCc--chhhhc
Confidence 779999999999999999999999999999888888888888999999999999994 67999875 47 899999
Q ss_pred cC-CCceeeeCCCCccccccCCCCCc
Q psy6570 237 LP-SSHTCLCPDHLTEELNVTSGKMS 261 (713)
Q Consensus 237 ~~-g~~~C~C~~G~~~~~~~~~~~c~ 261 (713)
.+ ++|+|.|++||.. ..+...|.
T Consensus 282 ~~~~~~~C~C~~g~~l--~~d~~~C~ 305 (628)
T 4a0p_A 282 VPVGGFVCGCPAHYSL--NADNRTCS 305 (628)
T ss_dssp ETTTEEEEECSTTCEE--CTTSSCEE
T ss_pred CCCCCeeEEcCCCcEe--cccCCcCc
Confidence 99 8999999999973 33344443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=338.78 Aligned_cols=243 Identities=36% Similarity=0.719 Sum_probs=211.6
Q ss_pred CCcccCCceeEEEccCcc--c-EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceE
Q psy6570 1 MASISSGNVTRVKREMNL--K-TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDI 77 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~~--~-~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~i 77 (713)
+||+.+++|+|+++++.. + ++..++..|.|||+||.+++|||+|. ..++|.+++++|+.+++++...+..|++|
T Consensus 56 ~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~---~~~~I~v~~~dG~~~~~l~~~~l~~P~~I 132 (619)
T 3s94_A 56 WSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDS---ETNRIEVSNLDGSLRKVLFWQELDQPRAI 132 (619)
T ss_dssp EEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSSCSCCCCE
T ss_pred EEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeC---CCCEEEEEECCCCCEEEEEeCCCCCCceE
Confidence 478889999999999852 3 34567899999999999999999999 78999999999999988887789999999
Q ss_pred EEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecC
Q psy6570 78 ALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTE 157 (713)
Q Consensus 78 avD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~ 157 (713)
||||.+|+|||||++..++|+|+++||+.+++++...+.+|+|||||+.+++|||+|...++|++++++|..++.+...
T Consensus 133 avdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~- 211 (619)
T 3s94_A 133 ALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG- 211 (619)
T ss_dssp EEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------
T ss_pred EEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeC-
Confidence 9999999999999987679999999999999999888999999999999999999999999999999999998887653
Q ss_pred CCCccceeeeeeCCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEEeeccccCCccCCCCCC--CCCCCCeee
Q psy6570 158 DNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDK--PCHQSALCI 235 (713)
Q Consensus 158 ~~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~~~~~C~~~--~C~~~~~C~ 235 (713)
.+.+|+||++++++|||+||.+++|+++++.++.....+...+..|.+|+++|+.+|+ ...|+|..+ .| +++|+
T Consensus 212 -~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp-~~~n~C~~~ng~C--s~lCl 287 (619)
T 3s94_A 212 -SLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQP-NATNPCGIDNGGC--SHLCL 287 (619)
T ss_dssp -----CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSC-CCCCTTTTTGGGC--SSEEE
T ss_pred -CCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCC-CccccccCCCCcc--cceEE
Confidence 3779999999999999999999999999999888888888888899999999999995 578999876 46 89999
Q ss_pred ccCC--CceeeeCCCCcc
Q psy6570 236 NLPS--SHTCLCPDHLTE 251 (713)
Q Consensus 236 ~~~g--~~~C~C~~G~~~ 251 (713)
+.+. +|+|.||+||..
T Consensus 288 ~~~~~~~~~C~C~~g~~l 305 (619)
T 3s94_A 288 MSPVKPFYQCACPTGVKL 305 (619)
T ss_dssp ECSSTTSEEEECCTTCCB
T ss_pred CCCCCCCceEeCCchhee
Confidence 9884 799999999973
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=331.66 Aligned_cols=245 Identities=25% Similarity=0.445 Sum_probs=215.2
Q ss_pred CCcccCCceeEEEccCcc-c-EEec------CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCC
Q psy6570 1 MASISSGNVTRVKREMNL-K-TVLS------NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLN 72 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~~-~-~~~~------~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~ 72 (713)
++|+..++|+|+++++.. + ++.. .+..|.|||+||.+++|||+|. ..++|.+++++|+.+++++...+.
T Consensus 356 ~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~---~~~~I~v~~~~G~~~~~l~~~~l~ 432 (628)
T 4a0p_A 356 WIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCE---ATNVINVTRLDGRSVGVVLKGEQD 432 (628)
T ss_dssp EEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCEEEEEEECTTC
T ss_pred EEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcC---CCCEEEEEECCCCeEEEEEeCCCC
Confidence 467889999999998854 2 3333 5778999999999999999999 789999999999998888888899
Q ss_pred CcceEEEcCCCCcEEEEccCCCC-eEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCcee
Q psy6570 73 EPYDIALEPLSGRMFWTELGIKP-RISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRF 151 (713)
Q Consensus 73 ~p~~iavD~~~~~ly~td~~~~~-~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~ 151 (713)
.|++|||||.+|+|||||++..+ +|+|++|||+.+++++...+.+|+|||||+.+++|||+|...++|++++++|+.++
T Consensus 433 ~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~ 512 (628)
T 4a0p_A 433 RPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRI 512 (628)
T ss_dssp CEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred ceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceE
Confidence 99999999999999999998774 89999999999999998889999999999999999999999999999999999999
Q ss_pred EEEecCCCCccceeeeeeCCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEEeeccccCCccCCCCCCCCCCC
Q psy6570 152 VVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDKPCHQS 231 (713)
Q Consensus 152 ~~~~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~~~~~C~~~~C~~~ 231 (713)
++... .+.+|+||++++++|||+|+..++|+++++..+...+.+...+..+.+|.+++...+.....|+|+.++-+..
T Consensus 513 ~~~~~--~~~~P~glav~~~~ly~tD~~~~~i~~~~k~~G~~~~~i~~~~~~~~~i~~~~~~~~~~~~~n~c~~~ng~C~ 590 (628)
T 4a0p_A 513 VLEDS--NILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCS 590 (628)
T ss_dssp EEECS--SCSCEEEEEEETTEEEEEETTTTEEEEEETTSSSCCEEEECCCTTEEEEEEECCCCHHHHHHSTTTTGGGGCS
T ss_pred EEEcC--CCCCcEEEEEECCEEEEEECCCCeEEEEECcCCCCcEEEeccCCCCcceEEEeecccCccccccCCCCCCCcc
Confidence 88753 4779999999999999999999999999999888888888888889999998876553346789986532228
Q ss_pred CeeeccCC-CceeeeCCCCc
Q psy6570 232 ALCINLPS-SHTCLCPDHLT 250 (713)
Q Consensus 232 ~~C~~~~g-~~~C~C~~G~~ 250 (713)
++|+..+. .++|.||.||.
T Consensus 591 ~~C~~~~~~~~~C~C~~g~~ 610 (628)
T 4a0p_A 591 HICLVKGDGTTRCSCPMHLV 610 (628)
T ss_dssp SEEEECTTSCEEEECCTTEE
T ss_pred hhcccCCCCCeeeeCCCCCE
Confidence 99998776 58999999997
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=329.21 Aligned_cols=244 Identities=34% Similarity=0.699 Sum_probs=214.3
Q ss_pred CCcccCCceeEEEccC----cc-cEE-ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCc
Q psy6570 1 MASISSGNVTRVKREM----NL-KTV-LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEP 74 (713)
Q Consensus 1 vad~~~~~I~~~~~~~----~~-~~~-~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p 74 (713)
|+|+..++|+++++++ .. +++ ...+..|.||||||.+++|||+|. ..++|.+++++|+.+++++...+..|
T Consensus 422 ~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~---~~~~I~v~d~dg~~~~~l~~~~~~~P 498 (699)
T 1n7d_A 422 WSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS---VLGTVSVADTKGVKRKTLFREQGSKP 498 (699)
T ss_dssp ECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCT---TTSCEEEEBSSSCCEEEECCCSSCCC
T ss_pred EEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEec---cCCeEEEEecCCCceEEEEeCCCCCc
Confidence 4678889999999986 22 223 356789999999999999999998 78899999999999888887778999
Q ss_pred ceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEE
Q psy6570 75 YDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVY 154 (713)
Q Consensus 75 ~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~ 154 (713)
++|||||..++|||||++..++|++++++|+.+++++...+.+|+|||||+.+++|||+|...++|++++++|..+++++
T Consensus 499 ~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~ 578 (699)
T 1n7d_A 499 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 578 (699)
T ss_dssp CCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEEC
T ss_pred ceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEE
Confidence 99999999999999998864599999999999988887789999999999999999999999999999999999998887
Q ss_pred ecCCCCccceeeeeeCCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEEeeccccCCccCCCCCC-----CCC
Q psy6570 155 HTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQAHNVTNHCDDK-----PCH 229 (713)
Q Consensus 155 ~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~~~~~C~~~-----~C~ 229 (713)
.....+.+|++|++++++|||++|.+++|+++++..+..+.++..++..|++|+++|+.+|+ ...|+|..+ .|
T Consensus 579 ~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~~~~~qp-~~~n~C~~~~~~ng~C- 656 (699)
T 1n7d_A 579 EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQLTQP-RGVNWCERTTLSNGGC- 656 (699)
T ss_dssp CCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBCSSSSSC-CSCCSSCSSSCSSCSC-
T ss_pred ecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEEeCcccCC-CCCCCccccCCCCCCC-
Confidence 65445789999999999999999999999999998888778887788899999999999995 567999865 46
Q ss_pred CCCeeeccC------CCceeeeCCCCc
Q psy6570 230 QSALCINLP------SSHTCLCPDHLT 250 (713)
Q Consensus 230 ~~~~C~~~~------g~~~C~C~~G~~ 250 (713)
+|+|+..| .+|+|+||.||.
T Consensus 657 -s~lCl~~p~~~~~~~~~~C~Cp~g~~ 682 (699)
T 1n7d_A 657 -QYLCLPAPQINPHSPKFTCACPDGML 682 (699)
T ss_dssp -TTCCBCCCCCTTCSCSCBCCCCSSCE
T ss_pred -CcccCcCcccCCCCCCcEEECcCCCE
Confidence 79999765 369999999998
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.4e-26 Score=238.31 Aligned_cols=204 Identities=20% Similarity=0.397 Sum_probs=179.3
Q ss_pred CCceeEEEccCcc-cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCC
Q psy6570 6 SGNVTRVKREMNL-KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSG 84 (713)
Q Consensus 6 ~~~I~~~~~~~~~-~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~ 84 (713)
.+.|+++++++.. +.++..+..|.+|++|+.+++|||+|. ..++|++++++|+..+.++..++..|.+||+|+.++
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~---~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g 128 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDV---TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD 128 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEec---cCCceEEEecCCCCceEEEeCCCCCccEEEEecCCC
Confidence 4679999998854 555788999999999999999999999 789999999999988888877889999999999999
Q ss_pred cEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCC-CcEEEEeCCCCceeEEEecCCCCccc
Q psy6570 85 RMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKA-RTIESINLNGKDRFVVYHTEDNGYKP 163 (713)
Q Consensus 85 ~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~-~~I~~~~~~g~~~~~~~~~~~~~~~p 163 (713)
+|||+|...+ +|++++++|+.+++++...+..|++||||+.+++|||+|+.. ++|++++++|+.++++... .+..|
T Consensus 129 ~ly~~d~~~~-~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~--~~~~P 205 (349)
T 3v64_C 129 KLYWTDSGTS-RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT--HLFWP 205 (349)
T ss_dssp EEEEEETTTT-EEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCS--SCSCE
T ss_pred eEEEEcCCCC-eEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEEC--CCCCc
Confidence 9999999877 999999999999998888899999999999999999999988 9999999999988877654 35678
Q ss_pred eeeeee--CCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEEeeccc
Q psy6570 164 YKLEVF--EDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQ 215 (713)
Q Consensus 164 ~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q 215 (713)
.||+++ +++|||+|+..++|++++..+.....++...+..|.+|+++.....
T Consensus 206 nGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly 259 (349)
T 3v64_C 206 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLY 259 (349)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEE
T ss_pred ceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEE
Confidence 888886 7899999999999999998877666666667889999998654444
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=240.33 Aligned_cols=204 Identities=20% Similarity=0.397 Sum_probs=180.2
Q ss_pred CCceeEEEccCcc-cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCC
Q psy6570 6 SGNVTRVKREMNL-KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSG 84 (713)
Q Consensus 6 ~~~I~~~~~~~~~-~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~ 84 (713)
...|+++++++.. ..++..+..|.+|++|+.+++|||+|. ..++|++++++|+..+.++..++..|.+||||+.++
T Consensus 95 ~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~---~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g 171 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDV---TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD 171 (386)
T ss_dssp BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTT
T ss_pred CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeC---CCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCC
Confidence 4689999998754 556788999999999999999999999 789999999999988888878889999999999999
Q ss_pred cEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCC-CcEEEEeCCCCceeEEEecCCCCccc
Q psy6570 85 RMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKA-RTIESINLNGKDRFVVYHTEDNGYKP 163 (713)
Q Consensus 85 ~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~-~~I~~~~~~g~~~~~~~~~~~~~~~p 163 (713)
.|||+|+..+ +|++++++|+.+++++...+..|++|+||+.+++|||+|+.. ++|++++++|+.++++... .+..|
T Consensus 172 ~lY~~d~~~~-~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~--~~~~P 248 (386)
T 3v65_B 172 KLYWTDSGTS-RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT--HLFWP 248 (386)
T ss_dssp EEEEEETTTT-EEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS--SCSCE
T ss_pred eEEEEcCCCC-eEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC--CCCCe
Confidence 9999999887 999999999999999888899999999999999999999988 9999999999998888754 35678
Q ss_pred eeeeee--CCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEEeeccc
Q psy6570 164 YKLEVF--EDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQ 215 (713)
Q Consensus 164 ~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q 215 (713)
.||+++ +++|||+|+..++|++++..+.....++...+..|.+|+++....+
T Consensus 249 nGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly 302 (386)
T 3v65_B 249 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLY 302 (386)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEE
T ss_pred eeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEE
Confidence 888875 7899999999999999998877666666667889999998655444
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-25 Score=237.21 Aligned_cols=204 Identities=19% Similarity=0.351 Sum_probs=174.5
Q ss_pred CCceeEEEccCcc-cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCC----ceEEEEEcCCCCCcceEEEc
Q psy6570 6 SGNVTRVKREMNL-KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEG----RKKRTLLNTGLNEPYDIALE 80 (713)
Q Consensus 6 ~~~I~~~~~~~~~-~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G----~~~~~l~~~~~~~p~~iavD 80 (713)
...|+++++++.. ..++..+..|.+|++|+.+++|||+|. ..++|++++++| ....+++...+..|.+||||
T Consensus 91 ~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~---~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD 167 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL---SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 167 (400)
T ss_dssp TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEET---TTTEEEEEEC------CCCEEEECSSCSCEEEEEEE
T ss_pred cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEec---CCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEE
Confidence 5788999998754 556888999999999999999999999 789999999998 34667776778999999999
Q ss_pred CCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCC-CCcEEEEeCCCCceeEEEecCCC
Q psy6570 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPK-ARTIESINLNGKDRFVVYHTEDN 159 (713)
Q Consensus 81 ~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~-~~~I~~~~~~g~~~~~~~~~~~~ 159 (713)
+.++.|||+|...+ +|++++++|+.+++++...+..|.+||||+..++|||+|+. .++|++++++|+.++++... .
T Consensus 168 ~~~~~lY~~d~~~~-~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~--~ 244 (400)
T 3p5b_L 168 WIHSNIYWTDSVLG-TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE--N 244 (400)
T ss_dssp TTTTEEEEEETTTT-EEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS--S
T ss_pred ecCCceEEEECCCC-eEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC--C
Confidence 99999999999888 99999999999999998889999999999999999999986 48999999999998888765 3
Q ss_pred Cccceeeeee--CCeEEEEeCCCCcEEEEcccCCCcceeeec--cccccccEEEEeeccc
Q psy6570 160 GYKPYKLEVF--EDNLYFSTYRTNNILKINKFGNSDFNVLAN--NLNRASDVLILQENKQ 215 (713)
Q Consensus 160 ~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~i~v~~~~~q 215 (713)
+..|.||+++ +++|||+|...++|++++..+.....++.. .+..|.+|+++....+
T Consensus 245 l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~ly 304 (400)
T 3p5b_L 245 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVF 304 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEE
Confidence 5678888877 789999999999999999887666555543 4678899988766555
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-25 Score=253.48 Aligned_cols=204 Identities=19% Similarity=0.355 Sum_probs=174.1
Q ss_pred CCceeEEEccCc-ccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCc----eEEEEEcCCCCCcceEEEc
Q psy6570 6 SGNVTRVKREMN-LKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR----KKRTLLNTGLNEPYDIALE 80 (713)
Q Consensus 6 ~~~I~~~~~~~~-~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~----~~~~l~~~~~~~p~~iavD 80 (713)
...|+++++++. ...++..+..|.+|++|+..++|||+|. ..++|++++++|. ..++++...+..|.+||||
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~---~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL---SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEET---TTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeec---cceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence 467888888864 3556788999999999999999999999 7899999999984 4456676688999999999
Q ss_pred CCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCC-CcEEEEeCCCCceeEEEecCCC
Q psy6570 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKA-RTIESINLNGKDRFVVYHTEDN 159 (713)
Q Consensus 81 ~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~-~~I~~~~~~g~~~~~~~~~~~~ 159 (713)
+.+++|||+|+..+ +|++++++|+.+++|+...+..|.+||||+..++|||+|++. ++|++++++|+.+++++.. .
T Consensus 480 ~~~~~LY~tD~~~~-~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~--~ 556 (791)
T 3m0c_C 480 WIHSNIYWTDSVLG-TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE--N 556 (791)
T ss_dssp TTTTEEEEEETTTT-EEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS--S
T ss_pred ecCCcEEEEecCCC-eEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC--C
Confidence 99999999999888 999999999999999988899999999999999999999876 8999999999999888765 3
Q ss_pred Cccceeeeee--CCeEEEEeCCCCcEEEEcccCCCcceeeec--cccccccEEEEeeccc
Q psy6570 160 GYKPYKLEVF--EDNLYFSTYRTNNILKINKFGNSDFNVLAN--NLNRASDVLILQENKQ 215 (713)
Q Consensus 160 ~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~i~v~~~~~q 215 (713)
+..|.||+++ +++|||+|+..++|++++..+.....++.. .+..|.+|+++....+
T Consensus 557 l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lY 616 (791)
T 3m0c_C 557 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVF 616 (791)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEE
T ss_pred CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEE
Confidence 6688888887 789999999999999999987766666543 4678889988766555
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-25 Score=229.05 Aligned_cols=204 Identities=23% Similarity=0.395 Sum_probs=174.5
Q ss_pred CCceeEEEccCc---ccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceE-EEEEcCCCCCcceEEEcC
Q psy6570 6 SGNVTRVKREMN---LKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKK-RTLLNTGLNEPYDIALEP 81 (713)
Q Consensus 6 ~~~I~~~~~~~~---~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~-~~l~~~~~~~p~~iavD~ 81 (713)
...|.++++++. ..+++..+..|.+|++|+.+++|||+|. ..++|++++++|... +.++..++..|.+||+|+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~---~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~ 88 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDV---SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEET---TTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEEC---CCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence 468999999985 2445778889999999999999999999 789999999999753 445556788999999999
Q ss_pred CCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCC-CCcEEEEeCCCCceeEEEecCCCC
Q psy6570 82 LSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPK-ARTIESINLNGKDRFVVYHTEDNG 160 (713)
Q Consensus 82 ~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~-~~~I~~~~~~g~~~~~~~~~~~~~ 160 (713)
.++.|||+|...+ +|++++++|+.+++++...+..|++|++|+.+++|||+|+. .++|++++++|+.++++... .+
T Consensus 89 ~~g~ly~~d~~~~-~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~--~l 165 (318)
T 3sov_A 89 LGEKLYWTDSETN-RIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS--EI 165 (318)
T ss_dssp TTTEEEEEETTTT-EEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS--SC
T ss_pred CCCeEEEEECCCC-EEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC--CC
Confidence 9999999998877 99999999999999888889999999999999999999975 78999999999988887654 35
Q ss_pred ccceeeeee--CCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEEeeccc
Q psy6570 161 YKPYKLEVF--EDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQ 215 (713)
Q Consensus 161 ~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q 215 (713)
..|.||+++ +++|||+|...++|++++.++.....++...+..|.+|+++....+
T Consensus 166 ~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~ly 222 (318)
T 3sov_A 166 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILY 222 (318)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEE
T ss_pred CCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEE
Confidence 678888876 7899999999999999998876655555557888999998765444
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-24 Score=222.99 Aligned_cols=204 Identities=19% Similarity=0.351 Sum_probs=169.9
Q ss_pred CCceeEEEccCcc-cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCC----ceEEEEEcCCCCCcceEEEc
Q psy6570 6 SGNVTRVKREMNL-KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEG----RKKRTLLNTGLNEPYDIALE 80 (713)
Q Consensus 6 ~~~I~~~~~~~~~-~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G----~~~~~l~~~~~~~p~~iavD 80 (713)
.+.|.++++++.. ..++..+..|.||++|+.+++|||+|. ..++|++++++| +..+.++..++..|.+||+|
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~---~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd 85 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL---SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 85 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEET---TTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEEC---CCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEe
Confidence 5689999999854 455788999999999999999999999 789999999998 55566666678899999999
Q ss_pred CCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCC-CcEEEEeCCCCceeEEEecCCC
Q psy6570 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKA-RTIESINLNGKDRFVVYHTEDN 159 (713)
Q Consensus 81 ~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~-~~I~~~~~~g~~~~~~~~~~~~ 159 (713)
+.++.|||+|...+ +|++++++|+.+++++...+..|++|++|+.+++|||+|+.. ++|++++++|+.++++... .
T Consensus 86 ~~~~~ly~~d~~~~-~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~--~ 162 (316)
T 1ijq_A 86 WIHSNIYWTDSVLG-TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE--N 162 (316)
T ss_dssp TTTTEEEEEETTTT-EEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS--S
T ss_pred ecCCeEEEEECCCC-EEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEEC--C
Confidence 99999999998877 999999999998888887889999999999999999999876 8999999999988877654 3
Q ss_pred Cccceeeeee--CCeEEEEeCCCCcEEEEcccCCCcceeeec--cccccccEEEEeeccc
Q psy6570 160 GYKPYKLEVF--EDNLYFSTYRTNNILKINKFGNSDFNVLAN--NLNRASDVLILQENKQ 215 (713)
Q Consensus 160 ~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~i~v~~~~~q 215 (713)
+..|.+|+++ +++|||+|...++|.+++..+.....++.. .+..|.+|++......
T Consensus 163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly 222 (316)
T 1ijq_A 163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVF 222 (316)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEE
T ss_pred CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEE
Confidence 6688888887 789999999999999999886554444432 3677889888654333
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=219.43 Aligned_cols=207 Identities=26% Similarity=0.553 Sum_probs=174.9
Q ss_pred CCcccCCceeEEEccCcc-cEEe-cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEE
Q psy6570 1 MASISSGNVTRVKREMNL-KTVL-SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIA 78 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~~-~~~~-~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia 78 (713)
|+|..+++|+++++++.. +.++ ..+..|.+|++|+.+++|||+|. ..++|.+++++|+..++++..++..|++|+
T Consensus 52 ~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~---~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~ 128 (267)
T 1npe_A 52 WTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS---QLDRIEVAKMDGTQRRVLFDTGLVNPRGIV 128 (267)
T ss_dssp EEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSSCSSEEEEE
T ss_pred EEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEEC---CCCEEEEEEcCCCCEEEEEECCCCCccEEE
Confidence 467778899999998864 3333 46789999999999999999999 788999999999887777766778999999
Q ss_pred EcCCCCcEEEEccCC-CCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecC
Q psy6570 79 LEPLSGRMFWTELGI-KPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTE 157 (713)
Q Consensus 79 vD~~~~~ly~td~~~-~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~ 157 (713)
+|+.+++|||+++.. ..+|+++++||+.++++....+..|++|++|+.+++|||+|...++|++++++|..+..+...
T Consensus 129 vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~- 207 (267)
T 1npe_A 129 TDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG- 207 (267)
T ss_dssp EETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-
T ss_pred EeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-
Confidence 999899999999873 349999999999888887677889999999998999999999999999999999877666543
Q ss_pred CCCccceeeeeeCCeEEEEeCCCCcEEEEcccCCCcceeeecc-ccccccEEEEeec
Q psy6570 158 DNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANN-LNRASDVLILQEN 213 (713)
Q Consensus 158 ~~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~i~v~~~~ 213 (713)
+..|.+|++++++|||+++..++|+++++.++.....+..+ ...|.+|++.++.
T Consensus 208 --~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 208 --LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp --CCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred --CCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 56899999999999999999999999998877666655443 3468888876543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=7.3e-22 Score=200.40 Aligned_cols=198 Identities=27% Similarity=0.388 Sum_probs=163.5
Q ss_pred CCceeEEEccCccc-------EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEE
Q psy6570 6 SGNVTRVKREMNLK-------TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIA 78 (713)
Q Consensus 6 ~~~I~~~~~~~~~~-------~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia 78 (713)
.++|+++++++... .+......|.+|++|+.+++|||+|. ..++|.+++++|...+.++..++..|.+|+
T Consensus 9 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~---~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia 85 (267)
T 1npe_A 9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDI---SEPSIGRASLHGGEPTTIIRQDLGSPEGIA 85 (267)
T ss_dssp EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEET---TTTEEEEEESSSCCCEEEECTTCCCEEEEE
T ss_pred CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEEC---CCCEEEEEecCCCCcEEEEECCCCCccEEE
Confidence 45899999998532 12234578999999999999999999 789999999999877777766778999999
Q ss_pred EcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCC--CCcEEEEeCCCCceeEEEec
Q psy6570 79 LEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPK--ARTIESINLNGKDRFVVYHT 156 (713)
Q Consensus 79 vD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~--~~~I~~~~~~g~~~~~~~~~ 156 (713)
+|+.+++|||+|...+ +|.+++++|+.+++++...+..|++|++|+.+++|||++.. .++|++++++|..++++...
T Consensus 86 ~d~~~~~lyv~d~~~~-~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~ 164 (267)
T 1npe_A 86 LDHLGRTIFWTDSQLD-RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD 164 (267)
T ss_dssp EETTTTEEEEEETTTT-EEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT
T ss_pred EEecCCeEEEEECCCC-EEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEEC
Confidence 9998999999998877 99999999998888877678899999999989999999986 68999999999887776543
Q ss_pred CCCCccceeeeee--CCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEE
Q psy6570 157 EDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLIL 210 (713)
Q Consensus 157 ~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~ 210 (713)
.+..|.+|+++ +++|||++...++|++++..+..... +...+..|.+|.+.
T Consensus 165 --~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~-~~~~~~~P~gi~~d 217 (267)
T 1npe_A 165 --NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK-VLEGLQYPFAVTSY 217 (267)
T ss_dssp --TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE-EEECCCSEEEEEEE
T ss_pred --CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEE-EecCCCCceEEEEe
Confidence 35678888886 57999999999999999987544333 33355667777654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=233.08 Aligned_cols=204 Identities=19% Similarity=0.344 Sum_probs=167.5
Q ss_pred CCceeEEEccCcc-cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCC----ceEEEEEcCCCCCcceEEEc
Q psy6570 6 SGNVTRVKREMNL-KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEG----RKKRTLLNTGLNEPYDIALE 80 (713)
Q Consensus 6 ~~~I~~~~~~~~~-~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G----~~~~~l~~~~~~~p~~iavD 80 (713)
.+.|+++++++.. ..++..+..|.+|++|+.+++|||+|. ..++|++++++| .....++...+..|.+||||
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~---~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL---SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCT---TTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEec---CCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 4578899988754 344677899999999999999999999 788999999997 44555555567889999999
Q ss_pred CCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCC-CcEEEEeCCCCceeEEEecCCC
Q psy6570 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKA-RTIESINLNGKDRFVVYHTEDN 159 (713)
Q Consensus 81 ~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~-~~I~~~~~~g~~~~~~~~~~~~ 159 (713)
+..++|||+|...+ +|++++++|+.+++++...+..|++||||+..++|||+|+.. ++|++++++|+.+++++.. .
T Consensus 462 ~~~g~LY~tD~~~~-~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~--~ 538 (699)
T 1n7d_A 462 WIHSNIYWTDSVLG-TVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE--N 538 (699)
T ss_dssp CSSSBCEECCTTTS-CEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCS--S
T ss_pred eeCCcEEEEeccCC-eEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeC--C
Confidence 99999999998877 999999999998888877889999999999999999999876 8999999999988877654 3
Q ss_pred Cccceeeeee--CCeEEEEeCCCCcEEEEcccCCCcceeee--ccccccccEEEEeeccc
Q psy6570 160 GYKPYKLEVF--EDNLYFSTYRTNNILKINKFGNSDFNVLA--NNLNRASDVLILQENKQ 215 (713)
Q Consensus 160 ~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~i~v~~~~~q 215 (713)
+..|.||+++ +++|||+|+..++|++++..+.....++. ..+..|.+|.++....+
T Consensus 539 l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~ly 598 (699)
T 1n7d_A 539 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVF 598 (699)
T ss_dssp CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEE
T ss_pred CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEE
Confidence 5678888876 68999999999999999987655554443 23677888888765444
|
| >2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-21 Score=198.54 Aligned_cols=160 Identities=35% Similarity=0.953 Sum_probs=84.7
Q ss_pred CCCCCCCCCCCCCC-eeecCCCCCCeeecCCCcccCCccccCCCCCCCCCCceeeCCCCCCCCCceeeCCCCcccCCCCc
Q psy6570 306 VAPARTCYLDCNHG-TCEFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCES 384 (713)
Q Consensus 306 ~~~~~~C~~~C~~~-~C~~~~~~~~~C~C~~g~~G~~C~~~~c~~~~C~~~~~C~~~~~~~~~~~~C~C~~G~~g~~C~~ 384 (713)
.|...+|.++|.++ .|.. .+.|.|++||+|..|+...|.. +|.++|.|.. .+.|.|++||+|..|+.
T Consensus 145 ~C~~~~C~~~C~~~G~C~~----~~~C~C~~G~~G~~C~~~~C~~-~C~~~G~C~~-------~~~C~C~~G~~G~~C~~ 212 (324)
T 2ygq_A 145 TCQQAECPGGCRNGGFCNE----RRICECPDGFHGPHCEKALCTP-RCMNGGLCVT-------PGFCICPPGFYGVNCDK 212 (324)
T ss_dssp EECCCCCSSCCCSSCEECT----TSCEECCTTEESSSSCEESSSS-CCCTTCEECS-------SCCEECCTTCBTTTTCB
T ss_pred cccCCCCCCCCCCCCEECC----CCeEECCCCCcCCCCCCCCCCC-CCCCCCEEcC-------CCEEeCCCCccCCCccc
Confidence 34456777889875 9975 2789999999999999877765 8999999975 35799999999999998
Q ss_pred cCCCCCCCCCCEEEcCCCeeeCCCCCccCCCC--cCCCCCCCCCcEeccCCCCccccCCCCCcCCCCccCCCCCCC-CCC
Q psy6570 385 RICENKCHNGGTCIATTQTCVCPPGFTGDTCQ--QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYC-VNG 461 (713)
Q Consensus 385 ~~C~~~C~~~~~C~~~~~~C~C~~g~~g~~C~--~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~C~~~~C~~~~-~~~ 461 (713)
..|..+|.++|+|+. .+.|.|++||+|..|+ +|. .+|.+++.|+. .++|.|++||+|..|+.+.|...| .+|
T Consensus 213 ~~C~~~C~~~G~C~~-~~~C~C~~G~~G~~C~~~~C~-~~C~~~g~C~~---~~~C~C~~G~~G~~C~~~~C~~~C~~~g 287 (324)
T 2ygq_A 213 ANCSTTCFNGGTCFY-PGKCICPPGLEGEQCEISKCP-QPCRNGGKCIG---KSKCKCSKGYQGDLCSKPVCEPGCGAHG 287 (324)
T ss_dssp CCCSSCCCSSCCBSC-SSCBCCCTTCCTTTTC------------------------------------------------
T ss_pred CcCCCCCCCCCeeCC-CCeeeCCCCccCCCCCcCcCC-CcCCCCCEECC---CCEEECCCCCcCCCCcCCCCCCCCCCCC
Confidence 889999999999987 6899999999999998 675 57999999985 469999999999999988887666 568
Q ss_pred eeecCCCCCeecCCCCccCCCCCC
Q psy6570 462 ECSITDSGPKCMCSPGYSGKKCDT 485 (713)
Q Consensus 462 ~C~~~~~~~~C~C~~G~~g~~C~~ 485 (713)
+|.+ .++|.|.+||+|..|+.
T Consensus 288 ~C~~---~~~C~C~~G~~G~~C~~ 308 (324)
T 2ygq_A 288 TCHE---PNKCQCQEGWHGRHCNK 308 (324)
T ss_dssp ------------------------
T ss_pred EECC---CCEeECCCCCcCCCCCC
Confidence 8875 35899999999988875
|
| >4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-24 Score=210.43 Aligned_cols=239 Identities=9% Similarity=0.005 Sum_probs=165.2
Q ss_pred CeeecCCC---cccCCccccCC-CCCCCCCCceeeCCCCCCCCCceeeCCCCcccCCCCccC--CC-CCCCCCCEEEcCC
Q psy6570 329 PHCICQEN---FYGTYCEKVNN-SMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRI--CE-NKCHNGGTCIATT 401 (713)
Q Consensus 329 ~~C~C~~g---~~G~~C~~~~c-~~~~C~~~~~C~~~~~~~~~~~~C~C~~G~~g~~C~~~~--C~-~~C~~~~~C~~~~ 401 (713)
+.+.|.+| +.|..++.... ...+|.++|+|++... +|.|.|++||+|..|+..+ |+ .++...+.|.+ .
T Consensus 13 ~s~~~~pgg~~~~g~~~~~n~~~~~~~c~ngG~C~~g~~----~y~C~Cp~Gf~G~~Ce~ni~ec~~~~~c~s~pC~n-g 87 (267)
T 4fbr_A 13 SQATWNPGGLWLIGARDKQNVVALDIKSDDGGKTLKGTM----TYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQP-G 87 (267)
T ss_dssp TTSCCEEEEEEECCCCSSCCEEEEEEECSSTTSEEEEEE----EETTSCCEEEEEEECSTTEEEEEEESSSTTSCEEE-E
T ss_pred ccCCcCCCCceeeccccccccccCCCCcCCCCeecCCCC----CeEEeCCCCcccccccccccccccccCcCCCcccC-C
Confidence 67777777 55666665442 2337889999988755 7999999999999998654 43 22223344554 2
Q ss_pred CeeeCCCCCccCCCC---cCCCCCCCCCcEeccCCCCccccCCCCCcCCCCc--cCCCCCC--CCCCeeecCCCCCeecC
Q psy6570 402 QTCVCPPGFTGDTCQ---QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQ--YSQCKNY--CVNGECSITDSGPKCMC 474 (713)
Q Consensus 402 ~~C~C~~g~~g~~C~---~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~C~--~~~C~~~--~~~~~C~~~~~~~~C~C 474 (713)
++| |.|..|+ +|.+.||.++++|++...+|+|+|++||+|..|+ +++|... +..+.|.+ +
T Consensus 88 gtc-----~~G~~c~~~~eC~s~pC~ngG~C~~~~~sy~C~C~~Gf~G~~Ce~~~d~C~n~~~c~s~pC~n--------g 154 (267)
T 4fbr_A 88 GVW-----VLGARDKQNIVAVSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHS--------G 154 (267)
T ss_dssp EEE-----ECCCCSSCCEEEEEEECSSTTSEEEEEEEETTSCCEEEEEEECCCCEEEEEEECSSTTSCCEE--------E
T ss_pred Cee-----eccCccccccccCCCCCCCCCEEecCCccEEeeCCCCccccCCCCCcccccccCCcCCccccC--------C
Confidence 233 4677777 7999999999999999999999999999999998 3454433 33333332 1
Q ss_pred CCCccCCCCCCccccCCCCCCcccCCCCccCCCCCCCCCCCCcEEcCCCCCeeccCCCCCCCCCCcccCCCCCCCCCCCC
Q psy6570 475 SPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANK 554 (713)
Q Consensus 475 ~~G~~g~~C~~~~C~~~~~~~~C~C~~G~~g~~C~~~~C~~~g~C~~~~~~~~C~C~~g~~G~~C~~~~~~~~c~~~~~~ 554 (713)
..+|.|.+|+... .|...+|.++|+|++...+|+|.|++||+|..|+.. +++
T Consensus 155 g~c~~G~~c~~~i-------------------~c~~~~c~ngg~C~dg~~~y~C~Cp~Gf~G~~c~~~---------i~e 206 (267)
T 4fbr_A 155 GVWVLGTRGKQNV-------------------INVDAKSNDGGKTLSGTMTYNGEGPIGFRGTLTSPD---------TYT 206 (267)
T ss_dssp EEEECCSSTTSCE-------------------EEEEEECSSTTSEEEEEEEETTSCCEEEEEEEEETT---------EEE
T ss_pred cceeccccccccc-------------------ccCCCCCCCCCEeeCCCCCeEEeCCCCccccccccc---------cce
Confidence 1123455555421 133457899999999888999999999999999855 344
Q ss_pred CCCCCCCCCcEEeecCCCceeeCCCCCcCCCCCcCCCCCCCCCCCCCCCeEecCCCCcceeecCCCcccC
Q psy6570 555 CTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVNGWSGI 624 (713)
Q Consensus 555 C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~~~C~~~C~~~g~C~~~~~g~~~C~C~~G~~G~ 624 (713)
|+...+...+.|.+. +.+.+.|+.++.+..| ..+|.++|+|++.. .+|.|+|++||+|+
T Consensus 207 c~~~~~c~~~~c~~g-G~~~~~C~~g~n~~~c---------~~~c~ngGtC~dg~-~sy~CeCp~GF~G~ 265 (267)
T 4fbr_A 207 VENQWGGSTAPWNPG-GFWMIGARNGQNVVAL---------NVASSDGGKTLAGT-MIYNGEGPIGFRAR 265 (267)
T ss_dssp EEEECSCTTSCCEEE-EEEECCCCTTCCEEEE---------EEECSSTTSEEEEE-EEETTSCCEEEEEE
T ss_pred eccCCCccCCcccCC-CeEEEecCCCCccccC---------CcCCCCCCEeeCCC-cceeecCCCCcccc
Confidence 432222222333322 3345668888765544 33578899999876 79999999999985
|
| >2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-20 Score=190.82 Aligned_cols=166 Identities=36% Similarity=0.927 Sum_probs=86.5
Q ss_pred cccCCccccCCCCCCCCCCceeeCCCCCCCCCceeeCCCCcccCCCCccCCCCCCCCCCEEEcCCCeeeCCCCCccCCCC
Q psy6570 337 FYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCHNGGTCIATTQTCVCPPGFTGDTCQ 416 (713)
Q Consensus 337 ~~G~~C~~~~c~~~~C~~~~~C~~~~~~~~~~~~C~C~~G~~g~~C~~~~C~~~C~~~~~C~~~~~~C~C~~g~~g~~C~ 416 (713)
+.++.|....|. .+|.++|.|.. .+.|.|++||+|..|+...|..+|.++|+|+. ++.|.|++||+|..|+
T Consensus 141 ~~~~~C~~~~C~-~~C~~~G~C~~-------~~~C~C~~G~~G~~C~~~~C~~~C~~~G~C~~-~~~C~C~~G~~G~~C~ 211 (324)
T 2ygq_A 141 IFFKTCQQAECP-GGCRNGGFCNE-------RRICECPDGFHGPHCEKALCTPRCMNGGLCVT-PGFCICPPGFYGVNCD 211 (324)
T ss_dssp EEEEEECCCCCS-SCCCSSCEECT-------TSCEECCTTEESSSSCEESSSSCCCTTCEECS-SCCEECCTTCBTTTTC
T ss_pred cccccccCCCCC-CCCCCCCEECC-------CCeEECCCCCcCCCCCCCCCCCCCCCCCEEcC-CCEEeCCCCccCCCcc
Confidence 344556555564 48999999975 36899999999999998889999999999987 7899999999999998
Q ss_pred --cCCCCCCCCCcEeccCCCCccccCCCCCcCCCCccCCCCCCCC-CCeeecCCCCCeecCCCCccCCCCCCccccCCCC
Q psy6570 417 --QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCV-NGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDS 493 (713)
Q Consensus 417 --~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~C~~~~C~~~~~-~~~C~~~~~~~~C~C~~G~~g~~C~~~~C~~~~~ 493 (713)
.|. .+|.++|+|++. ++|.|++||+|..|++++|...|. ++.|.. .++|.|.+||+|+.|+...
T Consensus 212 ~~~C~-~~C~~~G~C~~~---~~C~C~~G~~G~~C~~~~C~~~C~~~g~C~~---~~~C~C~~G~~G~~C~~~~------ 278 (324)
T 2ygq_A 212 KANCS-TTCFNGGTCFYP---GKCICPPGLEGEQCEISKCPQPCRNGGKCIG---KSKCKCSKGYQGDLCSKPV------ 278 (324)
T ss_dssp BCCCS-SCCCSSCCBSCS---SCBCCCTTCCTTTTC--------------------------------------------
T ss_pred cCcCC-CCCCCCCeeCCC---CeeeCCCCccCCCCCcCcCCCcCCCCCEECC---CCEEECCCCCcCCCCcCCC------
Confidence 575 579999999874 589999999999999888876654 477874 4689999999999887532
Q ss_pred CCcccCCCCccCCCCCCCCCCCCcEEcCCCCCeeccCCCCCCCCCCccc
Q psy6570 494 GPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECA 542 (713)
Q Consensus 494 ~~~C~C~~G~~g~~C~~~~C~~~g~C~~~~~~~~C~C~~g~~G~~C~~~ 542 (713)
|. .+|.++|+|++ .++|.|++||+|..|+..
T Consensus 279 --------------C~-~~C~~~g~C~~---~~~C~C~~G~~G~~C~~~ 309 (324)
T 2ygq_A 279 --------------CE-PGCGAHGTCHE---PNKCQCQEGWHGRHCNKR 309 (324)
T ss_dssp -------------------------------------------------
T ss_pred --------------CC-CCCCCCCEECC---CCEeECCCCCcCCCCCCC
Confidence 22 26888899986 479999999999999854
|
| >4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.2e-24 Score=205.28 Aligned_cols=246 Identities=9% Similarity=-0.029 Sum_probs=161.8
Q ss_pred eeeccCCCceeeeCCCCccccccCCCCCcccCCCCCCCCCccCCCCCCCCCCcccCCCCCCCccccCCCCccCCCC--CC
Q psy6570 233 LCINLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNVTSGKMSCKVAP--AR 310 (713)
Q Consensus 233 ~C~~~~g~~~C~C~~G~~~~~~~~~~~c~C~~~~~~~~~~~~~~~~~~~~~~c~C~~~~~~~~c~C~~g~~~~~~~--~~ 310 (713)
.+.|..|++++.+.+|....+ ...+..++...+.++....+|.++...|.|.|++||+|..|+ ++
T Consensus 5 ~~~n~~Gg~s~~~~pgg~~~~-------------g~~~~~n~~~~~~~c~ngG~C~~g~~~y~C~Cp~Gf~G~~Ce~ni~ 71 (267)
T 4fbr_A 5 LVQNQWGGSQATWNPGGLWLI-------------GARDKQNVVALDIKSDDGGKTLKGTMTYNGEGPIGFRGTLSSANNY 71 (267)
T ss_dssp EEEEECSSTTSCCEEEEEEEC-------------CCCSSCCEEEEEEECSSTTSEEEEEEEETTSCCEEEEEEECSTTEE
T ss_pred eEeecCCcccCCcCCCCceee-------------ccccccccccCCCCcCCCCeecCCCCCeEEeCCCCccccccccccc
Confidence 356778888888888743210 011112222334455667889999999999999999999885 45
Q ss_pred CCC--CCCCCCeeecCCCCCCeeecCCCcccCCccccC-CCCCCCCCCceeeCCCCCCCCCceeeCCCCcccCCCCccC-
Q psy6570 311 TCY--LDCNHGTCEFDDDFDPHCICQENFYGTYCEKVN-NSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRI- 386 (713)
Q Consensus 311 ~C~--~~C~~~~C~~~~~~~~~C~C~~g~~G~~C~~~~-c~~~~C~~~~~C~~~~~~~~~~~~C~C~~G~~g~~C~~~~- 386 (713)
+|. ..|....|.+- +.| |.|..|++.+ |...||+++++|++... +|+|+|++||+|..|+..+
T Consensus 72 ec~~~~~c~s~pC~ng----gtc-----~~G~~c~~~~eC~s~pC~ngG~C~~~~~----sy~C~C~~Gf~G~~Ce~~~d 138 (267)
T 4fbr_A 72 TVENQWGGTSAPWQPG----GVW-----VLGARDKQNIVAVSIKSNDGGKTLTGTT----TYNGEGPIGFKSEVTDGDTY 138 (267)
T ss_dssp EEEEESSSTTSCEEEE----EEE-----ECCCCSSCCEEEEEEECSSTTSEEEEEE----EETTSCCEEEEEEECCCCEE
T ss_pred ccccccCcCCCcccCC----Cee-----eccCccccccccCCCCCCCCCEEecCCc----cEEeeCCCCccccCCCCCcc
Confidence 642 12333344331 122 4577787654 78889999999998655 7999999999999998654
Q ss_pred -CC-CCCCCCCEEEcCCCeeeCCCCCccCCCC---cCCCCCCCCCcEeccCCCCccccCCCCCcCCCCc--cCCCCCC--
Q psy6570 387 -CE-NKCHNGGTCIATTQTCVCPPGFTGDTCQ---QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQ--YSQCKNY-- 457 (713)
Q Consensus 387 -C~-~~C~~~~~C~~~~~~C~C~~g~~g~~C~---~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~C~--~~~C~~~-- 457 (713)
|+ ..+...+.|.+ +...|.|.+|+ .|.+.+|.++++|++...+|+|+|++||+|..|+ +++|...
T Consensus 139 ~C~n~~~c~s~pC~n------gg~c~~G~~c~~~i~c~~~~c~ngg~C~dg~~~y~C~Cp~Gf~G~~c~~~i~ec~~~~~ 212 (267)
T 4fbr_A 139 SVENQWGGSAAPWHS------GGVWVLGTRGKQNVINVDAKSNDGGKTLSGTMTYNGEGPIGFRGTLTSPDTYTVENQWG 212 (267)
T ss_dssp EEEEECSSTTSCCEE------EEEEECCSSTTSCEEEEEEECSSTTSEEEEEEEETTSCCEEEEEEEEETTEEEEEEECS
T ss_pred cccccCCcCCccccC------CcceecccccccccccCCCCCCCCCEeeCCCCCeEEeCCCCccccccccccceeccCCC
Confidence 43 22222333333 12223466666 5667789999999999999999999999999997 3444322
Q ss_pred CCCCeeecCCCCCeecCCCCccCCCCCCccccCCCCCCcccCCCCccCCCCCCCCCCCCcEEcCCCCCeeccCCCCCCCC
Q psy6570 458 CVNGECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGR 537 (713)
Q Consensus 458 ~~~~~C~~~~~~~~C~C~~G~~g~~C~~~~C~~~~~~~~C~C~~G~~g~~C~~~~C~~~g~C~~~~~~~~C~C~~g~~G~ 537 (713)
+..+.|.+. +.+.+.|. +|+.+..|+ .+|.++|+|++...+|.|.|++||+|.
T Consensus 213 c~~~~c~~g-G~~~~~C~-------------------------~g~n~~~c~-~~c~ngGtC~dg~~sy~CeCp~GF~G~ 265 (267)
T 4fbr_A 213 GSTAPWNPG-GFWMIGAR-------------------------NGQNVVALN-VASSDGGKTLAGTMIYNGEGPIGFRAR 265 (267)
T ss_dssp CTTSCCEEE-EEEECCCC-------------------------TTCCEEEEE-EECSSTTSEEEEEEEETTSCCEEEEEE
T ss_pred ccCCcccCC-CeEEEecC-------------------------CCCccccCC-cCCCCCCEeeCCCcceeecCCCCcccc
Confidence 222333221 22233344 444444332 278899999988789999999999875
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-18 Score=174.54 Aligned_cols=172 Identities=8% Similarity=0.162 Sum_probs=137.5
Q ss_pred ccCCceeEEEccCcccE-EecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCC
Q psy6570 4 ISSGNVTRVKREMNLKT-VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPL 82 (713)
Q Consensus 4 ~~~~~I~~~~~~~~~~~-~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~ 82 (713)
.....|+++++++.... +..... +++||.++.|||++. ....|++++++|..+++|+.. +..++++|.
T Consensus 126 ~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~---g~~~Iy~~~l~g~~~~~l~~~----~~~~~~~P~ 194 (302)
T 3s25_A 126 QTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNP---KNGQLYRYDTASQSEALFYDC----NCYKPVVLD 194 (302)
T ss_dssp SSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECT---TTCCEEEEETTTTEEEEEECS----CEEEEEEEE
T ss_pred CCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeC---CCceEEEEECCCCCEEEEeCC----Cccceeeec
Confidence 45788999999985543 333222 567999999999998 678999999999998877642 334567788
Q ss_pred CCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEE-cCCCCcEEEEeCCCCceeEEEecCCCCc
Q psy6570 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWA-DPKARTIESINLNGKDRFVVYHTEDNGY 161 (713)
Q Consensus 83 ~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~-d~~~~~I~~~~~~g~~~~~~~~~~~~~~ 161 (713)
.++|||+++...++|+++++||+.+++|+...+ | .|++.+++|||+ +.....|+++++||+.++.|...
T Consensus 195 g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~~--~---~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~----- 264 (302)
T 3s25_A 195 DTNVYYMDVNRDNAIVHVNINNPNPVVLTEANI--E---HYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG----- 264 (302)
T ss_dssp TTEEEEEEGGGTTEEEEECSSSCCCEECSCSCE--E---EEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES-----
T ss_pred CCEEEEEEcCCCcEEEEEECCCCCeEEEeCCCc--c---eEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC-----
Confidence 999999998866799999999999988865444 2 367779999997 56678999999999999888754
Q ss_pred cceeeeeeCCeEEEEeCCCCcEEEEcccCCCccee
Q psy6570 162 KPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNV 196 (713)
Q Consensus 162 ~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~ 196 (713)
...+|++++++|||+++..+.|++++.+|....++
T Consensus 265 ~~~~i~i~~d~Iy~td~~~~~i~~~~~dGs~~~~l 299 (302)
T 3s25_A 265 EFCNINVTSQYVYFTDFVSNKEYCTSTQNPDTIKA 299 (302)
T ss_dssp CEEEEEECSSEEEEEETTTCCEEEEESSSCCSCEE
T ss_pred ccceEEEeCCEEEEEECCCCeEEEEECCCCCceEe
Confidence 23589999999999999999999998776655443
|
| >1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-20 Score=175.23 Aligned_cols=146 Identities=21% Similarity=0.452 Sum_probs=122.0
Q ss_pred CCCCCCCCcEEcCCCCCeeccCCCCCCCC---CCcccCCCCCCCCCCCCCC----CCCCCCCcEEeecC-----CCceee
Q psy6570 509 DTCTCLNGGTCIPNSKNNVCKCPSQYTGR---RCECAVGDTSCASLANKCT----PNYCSNNGTCVLIE-----GKPSCK 576 (713)
Q Consensus 509 ~~~~C~~~g~C~~~~~~~~C~C~~g~~G~---~C~~~~~~~~c~~~~~~C~----~~~C~~~~~C~~~~-----g~~~C~ 576 (713)
...||.+ |+|++..++|+|.|++||+|. .|+ + +++|. ..+|.++++|+++. ++|+|.
T Consensus 9 ~~~pC~n-g~C~~~~g~~~C~C~~G~~g~~~~~C~-~---------id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~ 77 (186)
T 1z1y_A 9 VDTICXN-GQLVQMSNHFXCMCNEGLVHLSENTCE-E---------XNECXXETLGXACGEFGQCIENPDPAQVNMYXCG 77 (186)
T ss_dssp TTCCCBT-EEEEECSSCEEEEECTTEEEEETTEEE-E---------CCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEE
T ss_pred CCCCCCC-CEeECCCCCeEeECCCCCccCCCCccC-C---------CCcccCCCCCCCCCCCCEeecCCCCcCCCCEECC
Confidence 3568885 599999999999999999987 665 2 47888 67899999999998 899999
Q ss_pred CCCCCcCCCCCcCCCCCCC-CCCCCCCCeEe----cCCCCcceeecCCCccc-----CCCCcC--CCCCCCC-CCCCeec
Q psy6570 577 CLPPYSGKQCTEREDSPSC-HNYCDNAGLCS----YSKQGKPVCTCVNGWSG-----ITCSER--VSCAHFC-FNGGTCR 643 (713)
Q Consensus 577 C~~G~~G~~C~~~~~~~~C-~~~C~~~g~C~----~~~~g~~~C~C~~G~~G-----~~C~~~--~~C~~~C-~~~~~C~ 643 (713)
|++||+|..+... +++| ..+|.++++|+ +.. ++|+|.|++||+| ..|+++ ++|.++| .++++|+
T Consensus 78 C~~G~~g~~~~C~--~d~C~~~~C~~~g~C~~~~~~~~-g~~~C~C~~Gy~g~~~~~~~C~~~~~~~C~~~C~~~~~~C~ 154 (186)
T 1z1y_A 78 CIEGYTLXEDTCV--LDVCQYXNCGESGECIVEYLSEI-QSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCX 154 (186)
T ss_dssp ECTTEEEETTEEE--EGGGTTCCCCTTEEEEEEEETTE-EEEEEEECTEEEEETTTTTEEEEEECCCCCCCCCTTTEEEE
T ss_pred CCCCCccCCCCCC--CCcCcCCCCCCCCEEeeCCcCCC-CCceEECCCCCcccCCCCCcceEcCCCcccccccccCccee
Confidence 9999999865322 3778 56799999998 554 8999999999998 789875 6798899 8889998
Q ss_pred CCCCccCCCCCceeeCCCCcccCCCCccccc
Q psy6570 644 EQNYSLDPDLKPICICPRGYAGVRCQTLVHY 674 (713)
Q Consensus 644 ~~~~~~~~~~~~~C~C~~Gy~G~~C~~~~~~ 674 (713)
+ ..++|+|.|++||+|+.|+.....
T Consensus 155 n------~~g~y~C~C~~G~~g~~~~~~~~~ 179 (186)
T 1z1y_A 155 N------VEGVYXCQCMEGFTFDXEXNVCLG 179 (186)
T ss_dssp E------ETTEEEEEECTTCEEETTTTEEES
T ss_pred c------CCCCeeeECCCCCccCcccccCCc
Confidence 7 456699999999999999876543
|
| >2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-19 Score=166.24 Aligned_cols=145 Identities=28% Similarity=0.683 Sum_probs=84.6
Q ss_pred CeeeCCCCCccCCCC-cCCCC-CCCCCcEeccCCCCccccCCCCCcCCCCccCCCCCCC--CCCeeecCCCCCeecCCCC
Q psy6570 402 QTCVCPPGFTGDTCQ-QCLNL-KCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYC--VNGECSITDSGPKCMCSPG 477 (713)
Q Consensus 402 ~~C~C~~g~~g~~C~-~C~~~-~C~~~~~C~~~~~~~~C~C~~G~~g~~C~~~~C~~~~--~~~~C~~~~~~~~C~C~~G 477 (713)
+.|.|++||+|..|+ +|.+. .|..+++|.. ..+|+|++||+|..|+.++|...| .++.|.+ .++|.|++|
T Consensus 17 ~~c~C~~g~~G~~C~~~C~~~~~c~~~g~C~~---~g~C~C~~G~~G~~C~~~~C~~~C~~~~g~C~~---~~~C~C~~G 90 (169)
T 2vj2_A 17 SAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQ---NGNKTCMEGWMGPECNRAICRQGCSPKHGSCKL---PGDCRCQYG 90 (169)
T ss_dssp ----CCTTEETTTTCEECCCEEETTEEEEECS---SCCEEECTTEESTTSCEECCCTTCCTTTEECSS---TTCCEECTT
T ss_pred eeeeCCCcCcCCCcccccCCCCCcCCCCEeCC---CCeeECCCCCcCCCCCCCCCCCCCCCCCcccCC---CCeeECCCC
Confidence 445555555555554 34332 3445555543 125666666666666555555443 4555544 356777777
Q ss_pred ccCCCCCCccccCCCCCCcccCCCCccCCCCCCC-CCCCCcEEcCCCCCeeccCCCCCCCCCCcccCCCCCCCCCCCCCC
Q psy6570 478 YSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTC-TCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCT 556 (713)
Q Consensus 478 ~~g~~C~~~~C~~~~~~~~C~C~~G~~g~~C~~~-~C~~~g~C~~~~~~~~C~C~~g~~G~~C~~~~~~~~c~~~~~~C~ 556 (713)
|+|..|+++. .. .|.+ ++|+ ++++|.|++||+|..|+.+ +++|.
T Consensus 91 ~~G~~C~~C~----------------------~~~~C~~-g~C~---~~~~C~C~~G~~G~~C~~~---------~~~C~ 135 (169)
T 2vj2_A 91 WQGLYCDKCI----------------------PHPGCVH-GICN---EPWQCLCETNWGGQLCDKD---------LNYCG 135 (169)
T ss_dssp EESSSSCEEC----------------------CCTTCSS-EECS---STTCCEECTTEETTTTCEE---------SCHHH
T ss_pred CCCCCcccCC----------------------CCCCCCC-CCcC---CCCEEeCCCCCCCCcccCC---------CCCCC
Confidence 7776665311 11 2443 3665 3577888888888877644 45665
Q ss_pred C-CCCCCCcEEeec-CCCceeeCCCCCcCCCCC
Q psy6570 557 P-NYCSNNGTCVLI-EGKPSCKCLPPYSGKQCT 587 (713)
Q Consensus 557 ~-~~C~~~~~C~~~-~g~~~C~C~~G~~G~~C~ 587 (713)
. .+|.++|+|+++ .++|+|.|++||+|+.|+
T Consensus 136 ~~~~C~~~g~C~~~~~~~~~C~C~~G~~G~~Ce 168 (169)
T 2vj2_A 136 THQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168 (169)
T ss_dssp HTCCCCTTCEEEECSTTCEEEECCTTCCSTTSC
T ss_pred CCCCCCCCCEEcCCCCCCcEeECCCCCcCcCcC
Confidence 3 678777888875 677888888888887775
|
| >2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-19 Score=165.38 Aligned_cols=144 Identities=28% Similarity=0.735 Sum_probs=111.4
Q ss_pred CCeeecCCCcccCCccccCCCC-CCCCCCceeeCCCCCCCCCceeeCCCCcccCCCCccCCCCCCC-CCCEEEcCCCeee
Q psy6570 328 DPHCICQENFYGTYCEKVNNSM-CPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESRICENKCH-NGGTCIATTQTCV 405 (713)
Q Consensus 328 ~~~C~C~~g~~G~~C~~~~c~~-~~C~~~~~C~~~~~~~~~~~~C~C~~G~~g~~C~~~~C~~~C~-~~~~C~~~~~~C~ 405 (713)
.+.|.|++||+|+.|+.. |.. .+|.+++.|.. ..+|.|++||+|..|+..+|...|. .++.|++ +++|.
T Consensus 16 ~~~c~C~~g~~G~~C~~~-C~~~~~c~~~g~C~~-------~g~C~C~~G~~G~~C~~~~C~~~C~~~~g~C~~-~~~C~ 86 (169)
T 2vj2_A 16 RSAVTCDDYYYGFGCNKF-CRPRDDFFGHYACDQ-------NGNKTCMEGWMGPECNRAICRQGCSPKHGSCKL-PGDCR 86 (169)
T ss_dssp -----CCTTEETTTTCEE-CCCEEETTEEEEECS-------SCCEEECTTEESTTSCEECCCTTCCTTTEECSS-TTCCE
T ss_pred CeeeeCCCcCcCCCcccc-cCCCCCcCCCCEeCC-------CCeeECCCCCcCCCCCCCCCCCCCCCCCcccCC-CCeeE
Confidence 368999999999988753 332 25777788854 2479999999999999888888886 6788887 78999
Q ss_pred CCCCCccCCCCcCCCCC-CCCCcEeccCCCCccccCCCCCcCCCCc--cCCCCC--CC-CCCeeecC-CCCCeecCCCCc
Q psy6570 406 CPPGFTGDTCQQCLNLK-CQNGGVCVNKTTGLECDCPKFYYGKNCQ--YSQCKN--YC-VNGECSIT-DSGPKCMCSPGY 478 (713)
Q Consensus 406 C~~g~~g~~C~~C~~~~-C~~~~~C~~~~~~~~C~C~~G~~g~~C~--~~~C~~--~~-~~~~C~~~-~~~~~C~C~~G~ 478 (713)
|++||+|..|++|...+ |.+ ++|+ ++|+|+|++||+|..|+ +++|.. .| ++++|+++ .++|+|.|++||
T Consensus 87 C~~G~~G~~C~~C~~~~~C~~-g~C~---~~~~C~C~~G~~G~~C~~~~~~C~~~~~C~~~g~C~~~~~~~~~C~C~~G~ 162 (169)
T 2vj2_A 87 CQYGWQGLYCDKCIPHPGCVH-GICN---EPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGY 162 (169)
T ss_dssp ECTTEESSSSCEECCCTTCSS-EECS---STTCCEECTTEETTTTCEESCHHHHTCCCCTTCEEEECSTTCEEEECCTTC
T ss_pred CCCCCCCCCcccCCCCCCCCC-CCcC---CCCEEeCCCCCCCCcccCCCCCCCCCCCCCCCCEEcCCCCCCcEeECCCCC
Confidence 99999999999887776 775 4887 46899999999999997 566763 35 45889986 778999999999
Q ss_pred cCCCCC
Q psy6570 479 SGKKCD 484 (713)
Q Consensus 479 ~g~~C~ 484 (713)
+|+.|+
T Consensus 163 ~G~~Ce 168 (169)
T 2vj2_A 163 SGPNCE 168 (169)
T ss_dssp CSTTSC
T ss_pred cCcCcC
Confidence 998876
|
| >2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5e-18 Score=151.86 Aligned_cols=116 Identities=31% Similarity=0.753 Sum_probs=100.3
Q ss_pred CCCC--CCCCCCCcEEcCCCCCeeccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEeecCCCceeeCCCCCcC
Q psy6570 506 KKCD--TCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSG 583 (713)
Q Consensus 506 ~~C~--~~~C~~~g~C~~~~~~~~C~C~~g~~G~~C~~~~~~~~c~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G 583 (713)
++|. ..+|.++++|++..++|+|.|++||+|..|+.+ +++|..++|.++++|++..++|+|.|++||+|
T Consensus 6 deC~~~~~~C~~~g~C~~~~g~~~C~C~~Gy~G~~C~~~---------~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G 76 (135)
T 2vj3_A 6 DECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEID---------VNECVSNPCQNDATCLDQIGEFQCICMPGYEG 76 (135)
T ss_dssp CTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTTSCEE---------CCTTTTCCCCSSCEEEECSSCEEEECCTTEES
T ss_pred ccccCCCCCCCCCCEeECCCCCEEEECCCCCcCCccccc---------CccCCCCCCCCCCEEeCCCCCceeeCCCCCcC
Confidence 4565 568999999999999999999999999999865 57899899999999999999999999999999
Q ss_pred CCCCcCCCCCCC-CCCCCCCCeEecCCCCcceeecCCCcccCCCC-cCCCCC
Q psy6570 584 KQCTEREDSPSC-HNYCDNAGLCSYSKQGKPVCTCVNGWSGITCS-ERVSCA 633 (713)
Q Consensus 584 ~~C~~~~~~~~C-~~~C~~~g~C~~~~~g~~~C~C~~G~~G~~C~-~~~~C~ 633 (713)
..|+.. .++| ..+|.++++|++.. ++|+|.|++||+|..|+ ++++|.
T Consensus 77 ~~C~~~--~~~C~~~~C~~~g~C~~~~-g~~~C~C~~G~~G~~C~~~i~~C~ 125 (135)
T 2vj3_A 77 VHCEVN--TDECASSPCLHNGRCLDKI-NEFQCECPTGFTGHLCQVDLHHIL 125 (135)
T ss_dssp SSSCEE--CCTTTTCCSTTTCEEEECS-SCEEEECCTTEESSSSCEECC---
T ss_pred Ccceec--CCcccCCCcCCCCEeECCC-CCeEEECCCCCcCCccCccCcccc
Confidence 999742 3778 67899999999876 89999999999999997 566675
|
| >2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.7e-18 Score=150.65 Aligned_cols=118 Identities=31% Similarity=0.783 Sum_probs=99.6
Q ss_pred CCCCC--CCCCCCCcEEeecCCCceeeCCCCCcCCCCCcCCCCCCC-CCCCCCCCeEecCCCCcceeecCCCcccCCCC-
Q psy6570 552 ANKCT--PNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSC-HNYCDNAGLCSYSKQGKPVCTCVNGWSGITCS- 627 (713)
Q Consensus 552 ~~~C~--~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~~~C-~~~C~~~g~C~~~~~g~~~C~C~~G~~G~~C~- 627 (713)
+++|. .++|.++|+|++..++|+|.|++||+|..|+.. .++| ..+|.++++|++.. ++|+|.|++||+|..|+
T Consensus 5 ideC~~~~~~C~~~g~C~~~~g~~~C~C~~Gy~G~~C~~~--~~~C~~~~C~~~~~C~~~~-g~~~C~C~~G~~G~~C~~ 81 (135)
T 2vj3_A 5 VDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEID--VNECVSNPCQNDATCLDQI-GEFQCICMPGYEGVHCEV 81 (135)
T ss_dssp CCTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTTSCEE--CCTTTTCCCCSSCEEEECS-SCEEEECCTTEESSSSCE
T ss_pred cccccCCCCCCCCCCEeECCCCCEEEECCCCCcCCccccc--CccCCCCCCCCCCEEeCCC-CCceeeCCCCCcCCccee
Confidence 68898 679999999999999999999999999999732 3788 67899999999886 89999999999999998
Q ss_pred cCCCCC-CCCCCCCeecCCCCccCCCCCceeeCCCCcccCCCCccccccccc
Q psy6570 628 ERVSCA-HFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTLVHYISKK 678 (713)
Q Consensus 628 ~~~~C~-~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~~~~~~~~~ 678 (713)
++++|. .+|.++++|++ ..++|+|.|++||+|.+|+.++......
T Consensus 82 ~~~~C~~~~C~~~g~C~~------~~g~~~C~C~~G~~G~~C~~~i~~C~~~ 127 (135)
T 2vj3_A 82 NTDECASSPCLHNGRCLD------KINEFQCECPTGFTGHLCQVDLHHILDA 127 (135)
T ss_dssp ECCTTTTCCSTTTCEEEE------CSSCEEEECCTTEESSSSCEECC-----
T ss_pred cCCcccCCCcCCCCEeEC------CCCCeEEECCCCCcCCccCccCccccCC
Confidence 567886 78999999987 3456999999999999999877666543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.9e-17 Score=175.33 Aligned_cols=185 Identities=15% Similarity=0.155 Sum_probs=142.6
Q ss_pred CcccCCceeEEEccCc-ccEEecCCCCCceEEEeccCCeEEEeecCCC-CCCeEEEEecCCceE--EEEEcCCCCCcceE
Q psy6570 2 ASISSGNVTRVKREMN-LKTVLSNLHDPRGVAVDWVGKNLYWTDAGGR-SSNNIMVSTLEGRKK--RTLLNTGLNEPYDI 77 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~-~~~~~~~~~~p~gla~D~~~~~ly~td~~~~-~~~~I~~~~~~G~~~--~~l~~~~~~~p~~i 77 (713)
+|.. ++|+++++++. ...+...+..|.+|++|+.+++|||+|.... ....|++++.+|... ..+. .+..|.+|
T Consensus 155 ~d~~-~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~--~~~~p~gi 231 (430)
T 3tc9_A 155 VGEQ-HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELT--KGQNCNGA 231 (430)
T ss_dssp EEBT-EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE--ECSSCCCE
T ss_pred EeCC-CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeec--cCCCceEE
Confidence 3444 78999999874 3555778889999999998888999997321 123577788888664 3333 36889999
Q ss_pred EEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeC-CCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCc-----ee
Q psy6570 78 ALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDN-NIQWPTGITIDYPSQRLYWADPKARTIESINLNGKD-----RF 151 (713)
Q Consensus 78 avD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~-~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~-----~~ 151 (713)
++||.+++|||+|++.+ +|+++++++.....++.. ...+|++|+||+..++|||+|...++|+++++++.. ..
T Consensus 232 avdp~~g~lyv~d~~~~-~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~ 310 (430)
T 3tc9_A 232 ETHPINGELYFNSWNAG-QVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPY 310 (430)
T ss_dssp EECTTTCCEEEEETTTT-EEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCE
T ss_pred EEeCCCCEEEEEECCCC-EEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceE
Confidence 99998999999999888 999999998766444432 456899999999888899999999999999998752 22
Q ss_pred EEEec------------CCCCccce-eeeee---------CCeEEEEeCCCCcEEEEcccC
Q psy6570 152 VVYHT------------EDNGYKPY-KLEVF---------EDNLYFSTYRTNNILKINKFG 190 (713)
Q Consensus 152 ~~~~~------------~~~~~~p~-~i~~~---------~~~ly~td~~~~~i~~~~~~~ 190 (713)
++... ...+..|. +++++ ++.|||+|+.+++|+++++.+
T Consensus 311 ~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~G 371 (430)
T 3tc9_A 311 IVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQG 371 (430)
T ss_dssp EEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTTS
T ss_pred EEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCCC
Confidence 33321 11366788 78875 368999999999999998653
|
| >1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-19 Score=171.68 Aligned_cols=141 Identities=24% Similarity=0.599 Sum_probs=112.7
Q ss_pred CCCCeeecCCCCCeecCCCCccCC---CCCCccccCCCCCCcccCCCCccCCCCC----CCCCCCCcEEcCCC-----CC
Q psy6570 458 CVNGECSITDSGPKCMCSPGYSGK---KCDTCTCLNGDSGPKCMCSPGYSGKKCD----TCTCLNGGTCIPNS-----KN 525 (713)
Q Consensus 458 ~~~~~C~~~~~~~~C~C~~G~~g~---~C~~~~C~~~~~~~~C~C~~G~~g~~C~----~~~C~~~g~C~~~~-----~~ 525 (713)
|.+++|+++.++|+|.|++||+|. .|+. -++|. ..+|.++++|++.. ++
T Consensus 13 C~ng~C~~~~g~~~C~C~~G~~g~~~~~C~~-------------------id~C~~~~~~~~C~~~~~C~~~~~~~~~g~ 73 (186)
T 1z1y_A 13 CXNGQLVQMSNHFXCMCNEGLVHLSENTCEE-------------------XNECXXETLGXACGEFGQCIENPDPAQVNM 73 (186)
T ss_dssp CBTEEEEECSSCEEEEECTTEEEEETTEEEE-------------------CCCCSGGGTTSEEETTEEEEECSSTTSSCS
T ss_pred CCCCEeECCCCCeEeECCCCCccCCCCccCC-------------------CCcccCCCCCCCCCCCCEeecCCCCcCCCC
Confidence 445677777777777777777765 3321 13454 45788899999998 89
Q ss_pred eeccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEe----ecCCCceeeCCCCCcC-----CCCCcCCCCCCCC
Q psy6570 526 NVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCV----LIEGKPSCKCLPPYSG-----KQCTEREDSPSCH 596 (713)
Q Consensus 526 ~~C~C~~g~~G~~C~~~~~~~~c~~~~~~C~~~~C~~~~~C~----~~~g~~~C~C~~G~~G-----~~C~~~~~~~~C~ 596 (713)
|+|.|++||+|..+++. +++|...+|.++++|+ +..++|+|.|++||+| ..|+++ +.++|.
T Consensus 74 y~C~C~~G~~g~~~~C~---------~d~C~~~~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~-~~~~C~ 143 (186)
T 1z1y_A 74 YXCGCIEGYTLXEDTCV---------LDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXT-GETACQ 143 (186)
T ss_dssp EEEEECTTEEEETTEEE---------EGGGTTCCCCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEE-ECCCCC
T ss_pred EECCCCCCCccCCCCCC---------CCcCcCCCCCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceEc-CCCccc
Confidence 99999999999876544 4689888999999999 7788999999999998 778753 126787
Q ss_pred CCC-CCCCeEecCCCCcceeecCCCcccCCCCc
Q psy6570 597 NYC-DNAGLCSYSKQGKPVCTCVNGWSGITCSE 628 (713)
Q Consensus 597 ~~C-~~~g~C~~~~~g~~~C~C~~G~~G~~C~~ 628 (713)
.+| .++++|++.. ++|+|.|++||+|..|+.
T Consensus 144 ~~C~~~~~~C~n~~-g~y~C~C~~G~~g~~~~~ 175 (186)
T 1z1y_A 144 LXCNTDNEVCXNVE-GVYXCQCMEGFTFDXEXN 175 (186)
T ss_dssp CCCCTTTEEEEEET-TEEEEEECTTCEEETTTT
T ss_pred ccccccCcceecCC-CCeeeECCCCCccCcccc
Confidence 799 8899999876 899999999999988765
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-16 Score=170.55 Aligned_cols=186 Identities=14% Similarity=0.119 Sum_probs=137.9
Q ss_pred CCcccCCceeEEEcc-CcccEEecCCCCCceEEEeccCCeEEEeecCCCC-CCeEEEEecCCceEE-EEEcCCCCCcceE
Q psy6570 1 MASISSGNVTRVKRE-MNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRS-SNNIMVSTLEGRKKR-TLLNTGLNEPYDI 77 (713)
Q Consensus 1 vad~~~~~I~~~~~~-~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~-~~~I~~~~~~G~~~~-~l~~~~~~~p~~i 77 (713)
|+|.. ++|+++++. +...++...+..|.+|++|+.++ |||+|..... ...|.+++.++.... ..+ ..+..|.+|
T Consensus 157 v~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~-~~~~~P~gi 233 (433)
T 4hw6_A 157 WVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSL-CNARGAKTC 233 (433)
T ss_dssp EECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEE-EECSSBCCC
T ss_pred EEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccccc-cccCCCCEE
Confidence 34555 899999985 45566677888999999998766 9999973211 234666666654431 222 247899999
Q ss_pred EEcCCCCcEEEEccCCCCeEEEEecC-CCCcEEEEe-CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCc-----e
Q psy6570 78 ALEPLSGRMFWTELGIKPRISGASID-GKNKFNLVD-NNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKD-----R 150 (713)
Q Consensus 78 avD~~~~~ly~td~~~~~~I~~~~~d-G~~~~~l~~-~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~-----~ 150 (713)
++|+.+++|||+|+..+ +|++++++ |...+.++. ....++.+|+||+..++|||+|..+++|+++++++.. .
T Consensus 234 avd~~~G~lyv~d~~~~-~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~ 312 (433)
T 4hw6_A 234 AVHPQNGKIYYTRYHHA-MISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVP 312 (433)
T ss_dssp EECTTTCCEEECBTTCS-EEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCC
T ss_pred EEeCCCCeEEEEECCCC-EEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcE
Confidence 99998999999999877 99999998 544244443 3345677899999888899999999999999988532 2
Q ss_pred eEEEec-C-----------CCCccceeeee---------e-CCeEEEEeCCCCcEEEEcccC
Q psy6570 151 FVVYHT-E-----------DNGYKPYKLEV---------F-EDNLYFSTYRTNNILKINKFG 190 (713)
Q Consensus 151 ~~~~~~-~-----------~~~~~p~~i~~---------~-~~~ly~td~~~~~i~~~~~~~ 190 (713)
.++... . ..+..|.+|++ + ++.|||+|+.+++|+++++.+
T Consensus 313 ~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G 374 (433)
T 4hw6_A 313 YIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEG 374 (433)
T ss_dssp EEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTS
T ss_pred EEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCC
Confidence 233321 1 13667999998 5 678999999999999998744
|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-17 Score=186.32 Aligned_cols=124 Identities=28% Similarity=0.703 Sum_probs=102.2
Q ss_pred CCCCCcEEcCCCCCeeccCC----CCCCCCCCcccCCCCCCCCCCCCCCC---CCCCCCcEEeecCCCceeeCCCCCcCC
Q psy6570 512 TCLNGGTCIPNSKNNVCKCP----SQYTGRRCECAVGDTSCASLANKCTP---NYCSNNGTCVLIEGKPSCKCLPPYSGK 584 (713)
Q Consensus 512 ~C~~~g~C~~~~~~~~C~C~----~g~~G~~C~~~~~~~~c~~~~~~C~~---~~C~~~~~C~~~~g~~~C~C~~G~~G~ 584 (713)
+|.++|+|++ ++|.|+ +||+|..|+.+ .+.|.. .+|.++|+|.+ ++|.|++||+|.
T Consensus 494 ~Cs~~G~C~~----g~C~C~~~~~~Gy~G~~Ce~~---------~~~C~~~~~~~C~~~G~C~~----g~C~C~~Gy~G~ 556 (690)
T 3fcs_B 494 VCSQRGECLC----GQCVCHSSDFGKITGKYCECD---------DFSCVRYKGEMCSGHGQCSC----GDCLCDSDWTGY 556 (690)
T ss_dssp GGGGSEEECS----SSEEECCCSSCCCBSTTSCBC---------SSCCCBSSSSBGGGSEEEET----TEEEECTTEESS
T ss_pred CCCCCCEEEC----CeeEeecCCCCCeeCCCcCcc---------cCcCcCCCCCCCCCCCEecC----CeeECcCCCcCC
Confidence 5888999983 699999 99999999865 346664 47999999985 789999999999
Q ss_pred CCCcCCCCCCCC----CCCCCCCeEecCCCCcceeec-CCCcccCCCCcCCCCCCCCCCCCeecCCCCccCCCCCceeeC
Q psy6570 585 QCTEREDSPSCH----NYCDNAGLCSYSKQGKPVCTC-VNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICIC 659 (713)
Q Consensus 585 ~C~~~~~~~~C~----~~C~~~g~C~~~~~g~~~C~C-~~G~~G~~C~~~~~C~~~C~~~~~C~~~~~~~~~~~~~~C~C 659 (713)
.|+...+.+.|. .+|.++|+|.+. .|.| ++||+|..|+....|..+|.++++|+. |
T Consensus 557 ~CeC~~~~~~C~~~~g~~C~~~G~C~~g-----~C~C~~~Gy~G~~Ce~C~~C~~~C~~~g~Cv~--------------C 617 (690)
T 3fcs_B 557 YCNCTTRTDTCMSSNGLLCSGRGKCECG-----SCVCIQPGSYGDTCEKCPTCPDACTFKKECVE--------------C 617 (690)
T ss_dssp SSCEECCCTTTBCTTSSBTSSSCEEETT-----EEECCSTTCBSTTSCBCTTSCCTTTSCCGGGT--------------T
T ss_pred CCccCCCCCcccCCCCCCCCCCCEEeCC-----EEECCCCCccCCCcCcCCCCCCCCCCCCCccc--------------C
Confidence 998322346784 579999999752 6999 999999999975668888999999976 8
Q ss_pred CCCcccCCCCcc
Q psy6570 660 PRGYAGVRCQTL 671 (713)
Q Consensus 660 ~~Gy~G~~C~~~ 671 (713)
..||+|..|+..
T Consensus 618 ~~g~tG~~C~~~ 629 (690)
T 3fcs_B 618 KKFDRGALHDEN 629 (690)
T ss_dssp TTTCCSSSSSSS
T ss_pred CCCCccCCCCcc
Confidence 999999976554
|
| >4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.3e-17 Score=146.00 Aligned_cols=114 Identities=32% Similarity=0.729 Sum_probs=92.3
Q ss_pred CCCCCCCCCCCcEEeecC--CCceeeCCCCCcCCCCCcCC----------CCCCC-CCCCCCCCeEe-------cCCCCc
Q psy6570 553 NKCTPNYCSNNGTCVLIE--GKPSCKCLPPYSGKQCTERE----------DSPSC-HNYCDNAGLCS-------YSKQGK 612 (713)
Q Consensus 553 ~~C~~~~C~~~~~C~~~~--g~~~C~C~~G~~G~~C~~~~----------~~~~C-~~~C~~~g~C~-------~~~~g~ 612 (713)
++|.+++|.++++|++.. ++|+|.|++||+|..|+... +.++| ..+|.++++|+ +.. ++
T Consensus 1 d~C~~~pC~~~g~C~~~~~~g~~~C~C~~G~~G~~C~~~~~~~~~~~~c~~~~~C~~~~C~~~g~C~~~~~~~~~~~-~~ 79 (143)
T 4d90_A 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTF-IG 79 (143)
T ss_dssp --CCSCCCGGGCEEEC-----CCEEECCTTCCTTTTCSCCCCTTTTTSCCCCCTTSSCCCCTTCEEEECCCEETTEE-CC
T ss_pred CcCCCCcCCCCCEeeCCCCCCCEEeECCCCCCCCCCccCccccccccccccCCcCCCCCCCCCCEecCCCccccCCC-CC
Confidence 368888999999999875 68999999999999998632 23667 56799999998 333 78
Q ss_pred ceeecCCCcccCCCC-cCCCCC-CCCCCCCeecCCCCccCCCCCceeeCCCCcccCCCCcccc
Q psy6570 613 PVCTCVNGWSGITCS-ERVSCA-HFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTLVH 673 (713)
Q Consensus 613 ~~C~C~~G~~G~~C~-~~~~C~-~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~~~~ 673 (713)
|+|.|++||+|..|+ ++++|. ++|.++++|++ ..++|+|.|++||+|++|+....
T Consensus 80 ~~C~C~~G~~G~~C~~~i~~C~~~~C~~~~~C~~------~~g~~~C~C~~G~~G~~c~~~~~ 136 (143)
T 4d90_A 80 YVCKCPRGFNGIHCQHNINECEVEPCKNGGICTD------LVANYSCECPGEFMGRNCQYKGG 136 (143)
T ss_dssp EEEECCTTEESTTSCEECCTTTTCCSCTTCEEEE------ETTEEEEECCTTCBSTTSCBC--
T ss_pred eEeECcCCCcCCCcccCCCcCCCCCCCCCCEeEC------CCCCeEeECCCCCccCCceecCC
Confidence 999999999999998 888897 78999999987 34569999999999999987654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.4e-16 Score=165.91 Aligned_cols=177 Identities=14% Similarity=0.202 Sum_probs=135.7
Q ss_pred eeEEEccCccc--EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcC-CCCCcceEEEcCCCCc
Q psy6570 9 VTRVKREMNLK--TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNT-GLNEPYDIALEPLSGR 85 (713)
Q Consensus 9 I~~~~~~~~~~--~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~-~~~~p~~iavD~~~~~ 85 (713)
+..++.++... ..+..+..|.+|++|+.+++|||+|. ..++|+++++++.....+... ....|++|++||..++
T Consensus 207 v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~---~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ 283 (430)
T 3tc9_A 207 NYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSW---NAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY 283 (430)
T ss_dssp EEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEET---TTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSE
T ss_pred EEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEEC---CCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE
Confidence 44456555433 23446889999999998899999999 789999999998776444433 3467999999997777
Q ss_pred EEEEccCCCCeEEEEecCCCC-----cEEEEeC--------------CCCCCe-eEEEeC-------CCCeEEEEcCCCC
Q psy6570 86 MFWTELGIKPRISGASIDGKN-----KFNLVDN--------------NIQWPT-GITIDY-------PSQRLYWADPKAR 138 (713)
Q Consensus 86 ly~td~~~~~~I~~~~~dG~~-----~~~l~~~--------------~~~~p~-glavd~-------~~~~LY~~d~~~~ 138 (713)
|||+|...+ +|++++.++.. ..+++.. .+..|. +++++. .++.|||+|..++
T Consensus 284 lyv~d~~~~-~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~ 362 (430)
T 3tc9_A 284 AYIVVVNQH-YILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENH 362 (430)
T ss_dssp EEEEETTTT-EEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGT
T ss_pred EEEEECCCC-EEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCc
Confidence 999999888 99999999753 2334332 267898 899963 4679999999999
Q ss_pred cEEEEeCCCCceeEEEec--------------CCCCccceeeeee--CCeEEEEeCCCCcEEEEccc
Q psy6570 139 TIESINLNGKDRFVVYHT--------------EDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 139 ~I~~~~~~g~~~~~~~~~--------------~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~ 189 (713)
+|++++.+|...++.... ..++..|.+|+++ +++||++|..+++|+++++.
T Consensus 363 ~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 363 CIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 999999888544443321 0125689999998 47999999999999998753
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=163.24 Aligned_cols=163 Identities=13% Similarity=0.149 Sum_probs=127.6
Q ss_pred ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecC-CceEEEEEcC-CCCCcceEEEcCCCCcEEEEccCCCCeEEE
Q psy6570 22 LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE-GRKKRTLLNT-GLNEPYDIALEPLSGRMFWTELGIKPRISG 99 (713)
Q Consensus 22 ~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~-G~~~~~l~~~-~~~~p~~iavD~~~~~ly~td~~~~~~I~~ 99 (713)
+..+..|.+|++|+..++|||+|. ..++|++++++ |...+.+... ....+.+|++||..++|||+|...+ +|++
T Consensus 224 ~~~~~~P~giavd~~~G~lyv~d~---~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~-~I~~ 299 (433)
T 4hw6_A 224 LCNARGAKTCAVHPQNGKIYYTRY---HHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH-CIYR 299 (433)
T ss_dssp EEECSSBCCCEECTTTCCEEECBT---TCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT-EEEE
T ss_pred ccccCCCCEEEEeCCCCeEEEEEC---CCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC-EEEE
Confidence 446889999999998899999999 78899999998 6553444433 3345678999998778999999888 9999
Q ss_pred EecCCCC-----cEEEEeC--------------CCCCCeeEEE---------eCCCCeEEEEcCCCCcEEEEeCCCCcee
Q psy6570 100 ASIDGKN-----KFNLVDN--------------NIQWPTGITI---------DYPSQRLYWADPKARTIESINLNGKDRF 151 (713)
Q Consensus 100 ~~~dG~~-----~~~l~~~--------------~~~~p~glav---------d~~~~~LY~~d~~~~~I~~~~~~g~~~~ 151 (713)
+++|+.. ..+++.. .+..|.+|++ | .++.|||+|+.+++|++++.+|...+
T Consensus 300 ~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd-~~g~lyvaD~~n~~I~~~~~~G~v~t 378 (433)
T 4hw6_A 300 VDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE-DEYDFYFCDRDSHTVRVLTPEGRVTT 378 (433)
T ss_dssp EEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS-CCEEEEEEETTTTEEEEECTTSEEEE
T ss_pred EeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC-CCCcEEEEECCCCEEEEECCCCCEEE
Confidence 9988532 2344432 3678999999 5 68899999999999999999884443
Q ss_pred EEEecC--------------CCCccceeeeee--CCeEEEEeCCCCcEEEEccc
Q psy6570 152 VVYHTE--------------DNGYKPYKLEVF--EDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 152 ~~~~~~--------------~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~ 189 (713)
+..... ..+.+|.+|+++ ++.|||+|+.+++|+++.+.
T Consensus 379 ~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 379 YAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 332211 136779999998 78999999999999998753
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-15 Score=160.59 Aligned_cols=184 Identities=13% Similarity=0.114 Sum_probs=140.2
Q ss_pred CCcccCCceeEEEccCc-ccEEecCCCCCceEEEeccCCeEEEeecCCCCCC-eEEEEecCCceEEEEE----cCCCCCc
Q psy6570 1 MASISSGNVTRVKREMN-LKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSN-NIMVSTLEGRKKRTLL----NTGLNEP 74 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~-~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~-~I~~~~~~G~~~~~l~----~~~~~~p 74 (713)
|+|..+++|+++++++. ..++......|. |++++.++.|||++. ..+ +|++++.++......+ ......|
T Consensus 146 v~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~---~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p 221 (409)
T 3hrp_A 146 AYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGW---EGTHTVYVYMKASGWAPTRIGQLGSTFSGKI 221 (409)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBS---STTCEEEEEEGGGTTCEEEEEECCTTSCSCC
T ss_pred EEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEec---CCCceEEEEEcCCCceeEEeeeccchhcCCc
Confidence 35667789999999864 455566677788 999999999999998 343 8999998876543222 2246889
Q ss_pred ceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEe----CC-CCCCe-eEEEeCCCCeEEEEcCCCCcEEEEeCCCC
Q psy6570 75 YDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVD----NN-IQWPT-GITIDYPSQRLYWADPKARTIESINLNGK 148 (713)
Q Consensus 75 ~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~----~~-~~~p~-glavd~~~~~LY~~d~~~~~I~~~~~~g~ 148 (713)
++|++||.+++|||++. .. +|+++++++.....+.. .. ...|. +|++|+.+++|||+|...++|++++++|.
T Consensus 222 ~~iav~p~~g~lyv~d~-~~-~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~ 299 (409)
T 3hrp_A 222 GAVALDETEEWLYFVDS-NK-NFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE 299 (409)
T ss_dssp CBCEECTTSSEEEEECT-TC-EEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC
T ss_pred EEEEEeCCCCeEEEEEC-CC-cEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC
Confidence 99999998999999875 34 89999998776555421 11 12356 99999888999999999999999999997
Q ss_pred ceeEEEecC------------CCCccceeeeee-CCeEEEEeC-CCCcEEEEcccCC
Q psy6570 149 DRFVVYHTE------------DNGYKPYKLEVF-EDNLYFSTY-RTNNILKINKFGN 191 (713)
Q Consensus 149 ~~~~~~~~~------------~~~~~p~~i~~~-~~~ly~td~-~~~~i~~~~~~~~ 191 (713)
.. .+.... ..+..|.+|+++ +++|||+|+ .+++|++++...+
T Consensus 300 ~~-~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 300 CE-WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp EE-EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred EE-EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence 33 333221 125679999998 567999999 9999999985433
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-15 Score=162.34 Aligned_cols=181 Identities=13% Similarity=0.209 Sum_probs=136.6
Q ss_pred ceeEEEccC--ccc-----EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecC--------Cce----------
Q psy6570 8 NVTRVKREM--NLK-----TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE--------GRK---------- 62 (713)
Q Consensus 8 ~I~~~~~~~--~~~-----~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~--------G~~---------- 62 (713)
+|+.+++.. ... ..+..+.+|.+|++|+.+++||+++. ..++|++++++ +..
T Consensus 222 ~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~---~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 222 SVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSY---EKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEET---TTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred eEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEEC---CCCEEEEEecccccccccCceeeccccccccc
Confidence 366665443 322 23446789999999999999999999 78899999997 332
Q ss_pred -EEEEEc-CCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCc-----EEEEeC--------------CCCCCe-e
Q psy6570 63 -KRTLLN-TGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNK-----FNLVDN--------------NIQWPT-G 120 (713)
Q Consensus 63 -~~~l~~-~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~-----~~l~~~--------------~~~~p~-g 120 (713)
.+.++. .....|.+|++||..+.||++|+.++ +|+++++|+... .+++.. .|..|. +
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h-~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g 377 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNH-YFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG 377 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTT-EEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCC-EEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence 223332 33467999999997777999999989 999999998653 344432 467899 8
Q ss_pred EEEeC------CCCeEEEEcCCCCcEEEEeCCCCceeEEEecC--------------------CCCccceeeeeeC--Ce
Q psy6570 121 ITIDY------PSQRLYWADPKARTIESINLNGKDRFVVYHTE--------------------DNGYKPYKLEVFE--DN 172 (713)
Q Consensus 121 lavd~------~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~--------------------~~~~~p~~i~~~~--~~ 172 (713)
+++|. .++.||++|+.+++|++++.+|.-.++..... .++.+|.+|+++. +.
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~ 457 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEM 457 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTE
T ss_pred EEEccccccccCCCeEEEEECCCCEEEEEeCCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCE
Confidence 88873 56899999999999999999885443332210 1367899999984 79
Q ss_pred EEEEeCCCCcEEEEcccCCC
Q psy6570 173 LYFSTYRTNNILKINKFGNS 192 (713)
Q Consensus 173 ly~td~~~~~i~~~~~~~~~ 192 (713)
||++|..+++|+++.+.+..
T Consensus 458 lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 458 FYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp EEEEETTTTEEEEEEECCCC
T ss_pred EEEEeCCCCEEEEEECCCCc
Confidence 99999999999999876543
|
| >4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-16 Score=144.58 Aligned_cols=118 Identities=32% Similarity=0.747 Sum_probs=96.0
Q ss_pred CCCCCCCCCCcEEcCCC--CCeeccCCCCCCCCCCcccCC----CCCCCCCCCCCCCCCCCCCcEEe-------ecCCCc
Q psy6570 507 KCDTCTCLNGGTCIPNS--KNNVCKCPSQYTGRRCECAVG----DTSCASLANKCTPNYCSNNGTCV-------LIEGKP 573 (713)
Q Consensus 507 ~C~~~~C~~~g~C~~~~--~~~~C~C~~g~~G~~C~~~~~----~~~c~~~~~~C~~~~C~~~~~C~-------~~~g~~ 573 (713)
.|...||.++++|++.. ++|+|.|++||+|..|+.... ...| ...++|..++|.++++|+ ++.++|
T Consensus 2 ~C~~~pC~~~g~C~~~~~~g~~~C~C~~G~~G~~C~~~~~~~~~~~~c-~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~ 80 (143)
T 4d90_A 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEP-TSAGPCTPNPCHNGGTCEISEAYRGDTFIGY 80 (143)
T ss_dssp -CCSCCCGGGCEEEC-----CCEEECCTTCCTTTTCSCCCCTTTTTSC-CCCCTTSSCCCCTTCEEEECCCEETTEECCE
T ss_pred cCCCCcCCCCCEeeCCCCCCCEEeECCCCCCCCCCccCcccccccccc-ccCCcCCCCCCCCCCEecCCCccccCCCCCe
Confidence 57778999999999865 579999999999999974311 1111 125789889999999999 667899
Q ss_pred eeeCCCCCcCCCCC-cCCCCCCC-CCCCCCCCeEecCCCCcceeecCCCcccCCCCcC
Q psy6570 574 SCKCLPPYSGKQCT-EREDSPSC-HNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSER 629 (713)
Q Consensus 574 ~C~C~~G~~G~~C~-~~~~~~~C-~~~C~~~g~C~~~~~g~~~C~C~~G~~G~~C~~~ 629 (713)
+|.|++||+|..|+ ++ ++| ..+|.++++|++.. ++|+|.|++||+|+.|+..
T Consensus 81 ~C~C~~G~~G~~C~~~i---~~C~~~~C~~~~~C~~~~-g~~~C~C~~G~~G~~c~~~ 134 (143)
T 4d90_A 81 VCKCPRGFNGIHCQHNI---NECEVEPCKNGGICTDLV-ANYSCECPGEFMGRNCQYK 134 (143)
T ss_dssp EEECCTTEESTTSCEEC---CTTTTCCSCTTCEEEEET-TEEEEECCTTCBSTTSCBC
T ss_pred EeECcCCCcCCCcccCC---CcCCCCCCCCCCEeECCC-CCeEeECCCCCccCCceec
Confidence 99999999999998 54 788 67899999999876 8999999999999999863
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.66 E-value=7e-15 Score=158.22 Aligned_cols=173 Identities=16% Similarity=0.179 Sum_probs=133.0
Q ss_pred ceeEEEccCcccE-Ee----c-CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEE----EcCC-CCCcc-
Q psy6570 8 NVTRVKREMNLKT-VL----S-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTL----LNTG-LNEPY- 75 (713)
Q Consensus 8 ~I~~~~~~~~~~~-~~----~-~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l----~~~~-~~~p~- 75 (713)
+|+++++.+.... .+ . ....|.+|++|+.++.|||++. .++|+++++++....++ .... ...|.
T Consensus 195 ~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~----~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~ 270 (409)
T 3hrp_A 195 TVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS----NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGP 270 (409)
T ss_dssp EEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT----TCEEEEEETTTCCEEEEEECCCCSCCCCSSCC
T ss_pred eEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC----CCcEEEEECCCCCEEEEecccccCCCCCCccc
Confidence 7888888765431 22 3 6788999999998899999875 57999999987765554 2111 12366
Q ss_pred eEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCC--------------CCCCeeEEEeCCCCeEEEEcC-CCCcE
Q psy6570 76 DIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNN--------------IQWPTGITIDYPSQRLYWADP-KARTI 140 (713)
Q Consensus 76 ~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~--------------~~~p~glavd~~~~~LY~~d~-~~~~I 140 (713)
+|++||.+++|||+|...+ +|++++++|. ..+++... +..|.+|++|+. ++|||+|. .+++|
T Consensus 271 ~ia~~p~~g~lyv~d~~~~-~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d-G~lyvad~~~~~~I 347 (409)
T 3hrp_A 271 YLIYYFVDSNFYMSDQNLS-SVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED-GNFYIVDGFKGYCL 347 (409)
T ss_dssp EEEEETTTTEEEEEETTTT-EEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT-CCEEEEETTTTCEE
T ss_pred cEEEeCCCCEEEEEeCCCC-EEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC-CCEEEEeCCCCCEE
Confidence 9999998899999999888 9999999987 44444433 678999999965 56999999 99999
Q ss_pred EEEe-CCCCceeEEEec-C-----------CCCccceeeeeeC-CeEEEEeCCCCcEEEEcc
Q psy6570 141 ESIN-LNGKDRFVVYHT-E-----------DNGYKPYKLEVFE-DNLYFSTYRTNNILKINK 188 (713)
Q Consensus 141 ~~~~-~~g~~~~~~~~~-~-----------~~~~~p~~i~~~~-~~ly~td~~~~~i~~~~~ 188 (713)
++++ .+|. ...+... . ..+..|.+|+++. +.||++|+.+++|+++.+
T Consensus 348 ~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 348 RKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 9999 4554 4444332 0 1256899999984 899999999999999864
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-14 Score=151.98 Aligned_cols=199 Identities=16% Similarity=0.198 Sum_probs=142.8
Q ss_pred CceeEEEccC-cccEEe--cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCc--eEEEEE--------cCCCCC
Q psy6570 7 GNVTRVKREM-NLKTVL--SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR--KKRTLL--------NTGLNE 73 (713)
Q Consensus 7 ~~I~~~~~~~-~~~~~~--~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~--~~~~l~--------~~~~~~ 73 (713)
++|++++.++ ...... ..+..|.+|++|+. ++||++|. ..++|.+++++|+ ....+. ...+..
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~-g~l~v~d~---~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~ 144 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD-GNYWVTDV---ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQ 144 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTT-SCEEEEET---TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSS
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCC-CCEEEEEC---CCCEEEEEeCCCCeEEEEEecccCCCCCCccccCC
Confidence 5788888864 322222 34678999999965 66999999 7899999999997 444443 234678
Q ss_pred cceEEEcCCCCcEEEEcc-CCCCeEEEEecCCCCcEEEEe---------CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEE
Q psy6570 74 PYDIALEPLSGRMFWTEL-GIKPRISGASIDGKNKFNLVD---------NNIQWPTGITIDYPSQRLYWADPKARTIESI 143 (713)
Q Consensus 74 p~~iavD~~~~~ly~td~-~~~~~I~~~~~dG~~~~~l~~---------~~~~~p~glavd~~~~~LY~~d~~~~~I~~~ 143 (713)
|.+|++|+.++.||++|. ..+ +|.+++.+|.....+.. ..+..|.+|++|+.+++|||+|...++|.++
T Consensus 145 P~~ia~~~~~g~lyv~d~~~~~-~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~ 223 (329)
T 3fvz_A 145 PTDVAVEPSTGAVFVSDGYCNS-RIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCF 223 (329)
T ss_dssp EEEEEECTTTCCEEEEECSSCC-EEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CcEEEEeCCCCeEEEEeCCCCC-eEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEE
Confidence 999999987899999996 566 99999999987666542 2356799999998889999999999999999
Q ss_pred eCC-CCceeEEEecCCCCccceeeeee-------CCeEEEEeCCCCcEEEEcccCCCcceeee---ccccccccEEEEe
Q psy6570 144 NLN-GKDRFVVYHTEDNGYKPYKLEVF-------EDNLYFSTYRTNNILKINKFGNSDFNVLA---NNLNRASDVLILQ 211 (713)
Q Consensus 144 ~~~-g~~~~~~~~~~~~~~~p~~i~~~-------~~~ly~td~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~i~v~~ 211 (713)
+++ |.....+..... ...|.++++. ++.+|+++....+|+.++...+.....+. ..+..|.+|++..
T Consensus 224 ~~~~G~~~~~~~~~~~-~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~ 301 (329)
T 3fvz_A 224 KTDTKEFVREIKHASF-GRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE 301 (329)
T ss_dssp ETTTCCEEEEECCTTT-TTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT
T ss_pred ECCCCcEEEEEecccc-CCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC
Confidence 998 766555532211 2334444333 44566666777788888866565554442 3455566666543
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-15 Score=160.81 Aligned_cols=294 Identities=15% Similarity=0.195 Sum_probs=137.7
Q ss_pred CCCceEEEecc---CCeEEEeecCCCC---------CCeEEEEecCCc--------eEEEEEc----CCCCCcceEEEcC
Q psy6570 26 HDPRGVAVDWV---GKNLYWTDAGGRS---------SNNIMVSTLEGR--------KKRTLLN----TGLNEPYDIALEP 81 (713)
Q Consensus 26 ~~p~gla~D~~---~~~ly~td~~~~~---------~~~I~~~~~~G~--------~~~~l~~----~~~~~p~~iavD~ 81 (713)
..+.|||+++. ++.||++...... ..+|.++.++.. ..++|+. ........|+++|
T Consensus 69 ~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp 148 (463)
T 2wg3_C 69 RGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP 148 (463)
T ss_dssp CSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT
T ss_pred CcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC
Confidence 45678999974 6789998652111 147888887521 1234432 1234566799997
Q ss_pred CCCcEEEEc--cC--------------CCCeEEEEecCCCC-------------------cEEEEeCCCCCCeeEEEeCC
Q psy6570 82 LSGRMFWTE--LG--------------IKPRISGASIDGKN-------------------KFNLVDNNIQWPTGITIDYP 126 (713)
Q Consensus 82 ~~~~ly~td--~~--------------~~~~I~~~~~dG~~-------------------~~~l~~~~~~~p~glavd~~ 126 (713)
+|+||++- .+ ..++|+|++.||+. +..+....++.|.+|++|+.
T Consensus 149 -DG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~ 227 (463)
T 2wg3_C 149 -DGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRH 227 (463)
T ss_dssp -TSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESS
T ss_pred -CCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCC
Confidence 78999983 11 13589999999941 23466668999999999987
Q ss_pred CC------eEEEEcC-C----CCcEEEEeCCCCc---eeEEEecCC-CCccceeeeeeCC--------eEEEEeCCCCcE
Q psy6570 127 SQ------RLYWADP-K----ARTIESINLNGKD---RFVVYHTED-NGYKPYKLEVFED--------NLYFSTYRTNNI 183 (713)
Q Consensus 127 ~~------~LY~~d~-~----~~~I~~~~~~g~~---~~~~~~~~~-~~~~p~~i~~~~~--------~ly~td~~~~~i 183 (713)
++ +||.+|. . ..+|..+.. |.+ ...+..... ....|.|+.++.+ .+|++++. ++|
T Consensus 228 tg~~~G~l~~~~~D~~G~~~~~~ei~~i~~-G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i 305 (463)
T 2wg3_C 228 PTDININLTILCSDSNGKNRSSARILQIIK-GKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRN-GNF 305 (463)
T ss_dssp CSSTTCSEEEEEECC------CEEEEEEC-----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETT-SCE
T ss_pred CCCcccceEEEecccCCCCCCCCeEeeecc-CCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCC-CcE
Confidence 54 7888885 2 123544422 221 111111111 1146778887533 47888886 678
Q ss_pred EEEcccCCCcc---eeeecc---------ccccccEEEEeeccccCCccCCCCCCCCCCCCeeeccCCCceeeeCCCCcc
Q psy6570 184 LKINKFGNSDF---NVLANN---------LNRASDVLILQENKQAHNVTNHCDDKPCHQSALCINLPSSHTCLCPDHLTE 251 (713)
Q Consensus 184 ~~~~~~~~~~~---~~~~~~---------~~~~~~i~v~~~~~q~~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~~ 251 (713)
+++........ ..+... ..++.++.+... +++=+.....-. +....|
T Consensus 306 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pd------------------G~Lyv~~~~~~~---~~~~~G 364 (463)
T 2wg3_C 306 LTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDEL------------------GEVYILSSSKSM---TQTHNG 364 (463)
T ss_dssp EEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEECTT------------------CCEEEEEESSCG---GGCSSE
T ss_pred EEEEeCCCCceeeEEEeecCCcccccccccCcceEEEECCC------------------CCEEEEeccCCc---ccCCCC
Confidence 88865433211 111000 011111111100 111111000000 000000
Q ss_pred ccccCCCCCcccCCCCCCCCCccCCCCCCCCCCcccCCCCCCCccccCCCCccCCCCCCCCCCCCCCCeeecCCCCCCee
Q psy6570 252 ELNVTSGKMSCKVAPARTCYLDCNHGNLPSSHTCLCPDHLTEELNVTSGKMSCKVAPARTCYLDCNHGTCEFDDDFDPHC 331 (713)
Q Consensus 252 ~~~~~~~~c~C~~~~~~~~~~~~~~~~~~~~~~c~C~~~~~~~~c~C~~g~~~~~~~~~~C~~~C~~~~C~~~~~~~~~C 331 (713)
. + |.... +. -....+.|..+|.+..|..++|..+|.||+|... +.|
T Consensus 365 ~------I------~Ri~~---------p~---------~~~~p~~C~~~~~g~~c~~~~C~~~C~nG~C~~~----~~C 410 (463)
T 2wg3_C 365 K------L------YKIVD---------PK---------RPLMPEECRATVQPAQTLTSECSRLCRNGYCTPT----GKC 410 (463)
T ss_dssp E------E------EEEEC---------TT---------SCSSCGGGCCCCCCCCCCCCHHHHHCCSEEECTT----SCE
T ss_pred c------E------EEecC---------cc---------cccccccCCCCCcCCCCccccccCCCCCCccCCC----CeE
Confidence 0 0 00000 00 0011245666777777777778666887888743 478
Q ss_pred ecCCCcccCCccccCCCCCCCCCCceeeCCCCCCCCCceeeCCCCcccCCCCcc
Q psy6570 332 ICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESR 385 (713)
Q Consensus 332 ~C~~g~~G~~C~~~~c~~~~C~~~~~C~~~~~~~~~~~~C~C~~G~~g~~C~~~ 385 (713)
.|++||+|..|+...|.. +|.+++.|+.. ++|.|++||+|..|+..
T Consensus 411 ~C~~G~~G~~C~~~~C~~-~C~~~g~C~~~-------~~C~C~~G~~G~~C~~~ 456 (463)
T 2wg3_C 411 CCSPGWEGDFCRTAKCEP-ACRHGGVCVRP-------NKCLCKKGYLGPQCEQV 456 (463)
T ss_dssp EECTTEESTTSCEECC--------------------------------------
T ss_pred CCCCCcCCCcCCcCcCCC-CCCCCCEECCC-------CEEECCCCcccCCCCCC
Confidence 888888888887767766 78888888653 46888888888887754
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-14 Score=156.22 Aligned_cols=184 Identities=11% Similarity=0.143 Sum_probs=134.3
Q ss_pred ccCCceeEEEccCcc-cEEec----CCCCCceEEE-------eccCCeEEEeecCCC---CCCeEEEEecC--CceE---
Q psy6570 4 ISSGNVTRVKREMNL-KTVLS----NLHDPRGVAV-------DWVGKNLYWTDAGGR---SSNNIMVSTLE--GRKK--- 63 (713)
Q Consensus 4 ~~~~~I~~~~~~~~~-~~~~~----~~~~p~gla~-------D~~~~~ly~td~~~~---~~~~I~~~~~~--G~~~--- 63 (713)
...++|+++++.+.. .+++. .+..|.+|++ |..+++||++|.... ....|++++.+ |...
T Consensus 159 ~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~ 238 (496)
T 3kya_A 159 DGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRS 238 (496)
T ss_dssp ETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTS
T ss_pred CCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecc
Confidence 345678899988743 44332 3457999999 988888999998320 12347777543 3443
Q ss_pred --EEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecC-------CCCc------------EEEEe-CCCCCCeeE
Q psy6570 64 --RTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASID-------GKNK------------FNLVD-NNIQWPTGI 121 (713)
Q Consensus 64 --~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~d-------G~~~------------~~l~~-~~~~~p~gl 121 (713)
..+. .+.+|.+|++||.+++||++++... +|++++++ +... +.++. ....+|.+|
T Consensus 239 ~~~~v~--~~~~p~giavdp~~g~LYvtd~~~g-~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~i 315 (496)
T 3kya_A 239 DIQLIA--AYKQCNGATIHPINGELYFNSYEKG-QVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQI 315 (496)
T ss_dssp CEEEEE--EESCCCCEEECTTTCCEEEEETTTT-EEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEE
T ss_pred cceeec--cCCCceEEEEcCCCCeEEEEECCCC-EEEEEecccccccccCceeecccccccccccceeEecCCCCCceEE
Confidence 2332 3579999999999999999999877 99999997 3322 23333 345689999
Q ss_pred EEeCCCCeEEEEcCCCCcEEEEeCCCCce-----eEEEec------------CCCCccce-eeeee--------CCeEEE
Q psy6570 122 TIDYPSQRLYWADPKARTIESINLNGKDR-----FVVYHT------------EDNGYKPY-KLEVF--------EDNLYF 175 (713)
Q Consensus 122 avd~~~~~LY~~d~~~~~I~~~~~~g~~~-----~~~~~~------------~~~~~~p~-~i~~~--------~~~ly~ 175 (713)
+||+..+.||++|..+++|+++++++... .++... ..++..|. ++.++ ++.||+
T Consensus 316 a~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyV 395 (496)
T 3kya_A 316 FIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYF 395 (496)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEE
T ss_pred EEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEE
Confidence 99998888999999999999999988542 334332 11456798 77775 568999
Q ss_pred EeCCCCcEEEEcccC
Q psy6570 176 STYRTNNILKINKFG 190 (713)
Q Consensus 176 td~~~~~i~~~~~~~ 190 (713)
+|+.+++|+++++.+
T Consensus 396 aD~~N~rIr~i~~~G 410 (496)
T 3kya_A 396 VDRLNFCVRKVTPEG 410 (496)
T ss_dssp EEGGGTEEEEECTTC
T ss_pred EECCCCEEEEEeCCC
Confidence 999999999998654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-14 Score=145.32 Aligned_cols=199 Identities=22% Similarity=0.317 Sum_probs=141.3
Q ss_pred CcccCCceeEEEccCcccEE--ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEE
Q psy6570 2 ASISSGNVTRVKREMNLKTV--LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIAL 79 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~~~~--~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iav 79 (713)
++...+.|.+++.++..... ...+..|.+|++|+. ++|||++. .+.|.++++++.....+....+..|.+|++
T Consensus 41 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~-g~l~v~~~----~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~ 115 (270)
T 1rwi_B 41 SEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGA-GTVYVTDF----NNRVVTLAAGSNNQTVLPFDGLNYPEGLAV 115 (270)
T ss_dssp ECSSSCEEEEECC-----EECCCCSCCSCCCEEECTT-CCEEEEET----TTEEEEECTTCSCCEECCCCSCSSEEEEEE
T ss_pred ccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCC-CCEEEEcC----CCEEEEEeCCCceEeeeecCCcCCCcceEE
Confidence 45567788888877644333 345678999999975 66999986 468999999997765554445678999999
Q ss_pred cCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCC
Q psy6570 80 EPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDN 159 (713)
Q Consensus 80 D~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 159 (713)
|+ ++.||+++.... +|.+++.............+..|.+|++|+ +++||+++...++|++++.++......... .
T Consensus 116 ~~-~g~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~--~ 190 (270)
T 1rwi_B 116 DT-QGAVYVADRGNN-RVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFT--D 190 (270)
T ss_dssp CT-TCCEEEEEGGGT-EEEEECTTCCSCEECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCS--S
T ss_pred CC-CCCEEEEECCCC-EEEEEECCCceeEeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCCCceEeeccc--C
Confidence 97 678999997766 899986544333332334567899999996 557999999889999999988765433222 2
Q ss_pred CccceeeeeeC-CeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEE
Q psy6570 160 GYKPYKLEVFE-DNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLIL 210 (713)
Q Consensus 160 ~~~p~~i~~~~-~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~ 210 (713)
+..|.+|+++. ++||+++...++|.+++..+..........+..|.+|.+.
T Consensus 191 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~ 242 (270)
T 1rwi_B 191 ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVD 242 (270)
T ss_dssp CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEEC
T ss_pred CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEEC
Confidence 46789999984 5999999999999999986543333222334455666544
|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-15 Score=167.31 Aligned_cols=159 Identities=26% Similarity=0.603 Sum_probs=115.2
Q ss_pred CCCCCCcccCCCCCCCc---cccCCCCccCCCCC----------CCCC-----CCCCCC-eeecCCCCCCeeecC----C
Q psy6570 279 LPSSHTCLCPDHLTEEL---NVTSGKMSCKVAPA----------RTCY-----LDCNHG-TCEFDDDFDPHCICQ----E 335 (713)
Q Consensus 279 ~~~~~~c~C~~~~~~~~---c~C~~g~~~~~~~~----------~~C~-----~~C~~~-~C~~~~~~~~~C~C~----~ 335 (713)
.++.....|.++.+.+. |.|.+||.|..|+. ++|. .+|.++ +|.. +.|.|+ +
T Consensus 440 ~pc~n~~~C~~g~G~~~~G~C~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~-----g~C~C~~~~~~ 514 (690)
T 3fcs_B 440 QAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC-----GQCVCHSSDFG 514 (690)
T ss_dssp TCCTTCTTTTTTSEEEETTEEEECTTCCSSSSCCSCC------CCCCSSSSSSCGGGGSEEECS-----SSEEECCCSSC
T ss_pred CCCCCCCcccCCCCeEeCCceEeCCCccCCceeeccCccCCccCCcCCCCCCCCCCCCCCEEEC-----CeeEeecCCCC
Confidence 34444445555555555 77777777777753 4573 248755 8872 589999 9
Q ss_pred CcccCCccc--cCCCC---CCCCCCceeeCCCCCCCCCceeeCCCCcccCCCC----ccCCC----CCCCCCCEEEcCCC
Q psy6570 336 NFYGTYCEK--VNNSM---CPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCE----SRICE----NKCHNGGTCIATTQ 402 (713)
Q Consensus 336 g~~G~~C~~--~~c~~---~~C~~~~~C~~~~~~~~~~~~C~C~~G~~g~~C~----~~~C~----~~C~~~~~C~~~~~ 402 (713)
||+|..|+. ..|.. .+|.++|.|.. +.|.|++||+|..|+ ...|. .+|.++|+|.. +
T Consensus 515 Gy~G~~Ce~~~~~C~~~~~~~C~~~G~C~~--------g~C~C~~Gy~G~~CeC~~~~~~C~~~~g~~C~~~G~C~~--g 584 (690)
T 3fcs_B 515 KITGKYCECDDFSCVRYKGEMCSGHGQCSC--------GDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC--G 584 (690)
T ss_dssp CCBSTTSCBCSSCCCBSSSSBGGGSEEEET--------TEEEECTTEESSSSCEECCCTTTBCTTSSBTSSSCEEET--T
T ss_pred CeeCCCcCcccCcCcCCCCCCCCCCCEecC--------CeeECcCCCcCCCCccCCCCCcccCCCCCCCCCCCEEeC--C
Confidence 999999973 33654 47888888865 479999999999998 33475 46888999986 6
Q ss_pred eeeC-CCCCccCCCCcCC--CCCCCCCcEeccCCCCccccCCCCCcCCCCccCCCCCCCCC
Q psy6570 403 TCVC-PPGFTGDTCQQCL--NLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVN 460 (713)
Q Consensus 403 ~C~C-~~g~~g~~C~~C~--~~~C~~~~~C~~~~~~~~C~C~~G~~g~~C~~~~C~~~~~~ 460 (713)
.|.| ++||+|..|+.|. +.+|.+++.|++ |..+|+|..|+.+.|...|.+
T Consensus 585 ~C~C~~~Gy~G~~Ce~C~~C~~~C~~~g~Cv~--------C~~g~tG~~C~~~~C~~~C~~ 637 (690)
T 3fcs_B 585 SCVCIQPGSYGDTCEKCPTCPDACTFKKECVE--------CKKFDRGALHDENTCNRYCRD 637 (690)
T ss_dssp EEECCSTTCBSTTSCBCTTSCCTTTSCCGGGT--------TTTTCCSSSSSSSCSTTTCCC
T ss_pred EEECCCCCccCCCcCcCCCCCCCCCCCCCccc--------CCCCCccCCCCccccccccCC
Confidence 9999 8999999988643 357888887765 889999998876667655543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=9.6e-14 Score=141.62 Aligned_cols=183 Identities=17% Similarity=0.254 Sum_probs=140.7
Q ss_pred CcccCCceeEEEccCcccEEec-------CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCc
Q psy6570 2 ASISSGNVTRVKREMNLKTVLS-------NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEP 74 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~~~~~~-------~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p 74 (713)
++..+++|.++++++.....+. .+..|.+|+++...++||+++.. ..+.|.+++.+|+....+....+..|
T Consensus 46 ~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~--~~~~i~~~d~~g~~~~~~~~~~~~~~ 123 (286)
T 1q7f_A 46 ADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS--PTHQIQIYNQYGQFVRKFGATILQHP 123 (286)
T ss_dssp EEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG--GGCEEEEECTTSCEEEEECTTTCSCE
T ss_pred EECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC--CCCEEEEECCCCcEEEEecCccCCCc
Confidence 4556778888888765432222 24679999997677999999961 26899999999987766654556789
Q ss_pred ceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEe-CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEE
Q psy6570 75 YDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVD-NNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVV 153 (713)
Q Consensus 75 ~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~-~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~ 153 (713)
.+|++|+ ++.||+++.... +|.+.+.+|+....+.. ..+..|.+|++|+ +++||+++...++|++++.+|.....+
T Consensus 124 ~~i~~~~-~g~l~v~~~~~~-~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~ 200 (286)
T 1q7f_A 124 RGVTVDN-KGRIIVVECKVM-RVIIFDQNGNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEGQYLRQI 200 (286)
T ss_dssp EEEEECT-TSCEEEEETTTT-EEEEECTTSCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTCCEEEEE
T ss_pred eEEEEeC-CCCEEEEECCCC-EEEEEcCCCCEEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCEEEEEcCCCCEEEEE
Confidence 9999997 578999998766 89999998876555543 3567899999996 578999999999999999988755554
Q ss_pred EecCCCCccceeeeee-CCeEEEEeCCCC-cEEEEcccC
Q psy6570 154 YHTEDNGYKPYKLEVF-EDNLYFSTYRTN-NILKINKFG 190 (713)
Q Consensus 154 ~~~~~~~~~p~~i~~~-~~~ly~td~~~~-~i~~~~~~~ 190 (713)
.... .+..|.+|+++ +++||+++...+ +|.+++..+
T Consensus 201 ~~~g-~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g 238 (286)
T 1q7f_A 201 GGEG-ITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG 238 (286)
T ss_dssp SCTT-TSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS
T ss_pred ccCC-ccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC
Confidence 3321 24678999987 568999998876 899998654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.7e-14 Score=145.71 Aligned_cols=173 Identities=15% Similarity=0.133 Sum_probs=133.3
Q ss_pred ecCCCCCceEEEeccCCeEEEeecCCCC---------------------CCeEEEEecC-CceEEEEEcCCCCCcceEEE
Q psy6570 22 LSNLHDPRGVAVDWVGKNLYWTDAGGRS---------------------SNNIMVSTLE-GRKKRTLLNTGLNEPYDIAL 79 (713)
Q Consensus 22 ~~~~~~p~gla~D~~~~~ly~td~~~~~---------------------~~~I~~~~~~-G~~~~~l~~~~~~~p~~iav 79 (713)
...+..|.+||+|+. ++||+++..... .++|.+++.+ |+..+.+....+..|.+|++
T Consensus 20 ~~~l~~v~~va~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~ 98 (329)
T 3fvz_A 20 YLLPGQVSGVALDSK-NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSI 98 (329)
T ss_dssp GCCCSCEEEEEECTT-CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEE
T ss_pred ceecCCceEEEECCC-CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEE
Confidence 346889999999975 789999983210 0369999986 66655544455789999999
Q ss_pred cCCCCcEEEEccCCCCeEEEEecCCC--CcEEEE--------eCCCCCCeeEEEeCCCCeEEEEcC-CCCcEEEEeCCCC
Q psy6570 80 EPLSGRMFWTELGIKPRISGASIDGK--NKFNLV--------DNNIQWPTGITIDYPSQRLYWADP-KARTIESINLNGK 148 (713)
Q Consensus 80 D~~~~~ly~td~~~~~~I~~~~~dG~--~~~~l~--------~~~~~~p~glavd~~~~~LY~~d~-~~~~I~~~~~~g~ 148 (713)
|+ ++.||++|...+ +|.+++++|. ....+. ...+..|.+|++|+.+++||++|. ..++|++++.+|.
T Consensus 99 d~-~g~l~v~d~~~~-~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~ 176 (329)
T 3fvz_A 99 DT-DGNYWVTDVALH-QVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK 176 (329)
T ss_dssp CT-TSCEEEEETTTT-EEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC
T ss_pred CC-CCCEEEEECCCC-EEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC
Confidence 96 677999998877 9999999998 344443 234678999999987899999997 7999999999998
Q ss_pred ceeEEEecC-------CCCccceeeeee--CCeEEEEeCCCCcEEEEcccCCCcceee
Q psy6570 149 DRFVVYHTE-------DNGYKPYKLEVF--EDNLYFSTYRTNNILKINKFGNSDFNVL 197 (713)
Q Consensus 149 ~~~~~~~~~-------~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~~~~~ 197 (713)
....+.... ..+..|.+|+++ +++||++++..++|.+++...+.....+
T Consensus 177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~ 234 (329)
T 3fvz_A 177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI 234 (329)
T ss_dssp EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE
Confidence 776664332 134569999997 3799999999999999998744444433
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-14 Score=154.79 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=105.1
Q ss_pred ccEEecCCCCCceEEEeccCC-eEEEeecCCCCCCeEEEEecCCceE-EE-E-----EcCC-----CCCcceEEEcCC--
Q psy6570 18 LKTVLSNLHDPRGVAVDWVGK-NLYWTDAGGRSSNNIMVSTLEGRKK-RT-L-----LNTG-----LNEPYDIALEPL-- 82 (713)
Q Consensus 18 ~~~~~~~~~~p~gla~D~~~~-~ly~td~~~~~~~~I~~~~~~G~~~-~~-l-----~~~~-----~~~p~~iavD~~-- 82 (713)
.++++++|..|.+|++.+.+. +|||++. .++|.+++.+|... .. + +..+ ...+.+||++|.
T Consensus 6 v~~va~gL~~P~~~a~~pdG~~rl~V~er----~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~ 81 (463)
T 2wg3_C 6 IQEVVSGLRQPVGALHSGDGSQRLFILEK----EGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYK 81 (463)
T ss_dssp EEEEEEEESSEEEEECCSSSSCCEEEEET----TTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHH
T ss_pred EEEeccCCCCceEEEECCCCCeEEEEEeC----CceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCc
Confidence 466788999999999998764 7999986 58899998877531 11 1 1111 245678999985
Q ss_pred -CCcEEEEccCC-----------CCeEEEEecCCC--------CcEEEEe----CCCCCCeeEEEeCCCCeEEEEc--CC
Q psy6570 83 -SGRMFWTELGI-----------KPRISGASIDGK--------NKFNLVD----NNIQWPTGITIDYPSQRLYWAD--PK 136 (713)
Q Consensus 83 -~~~ly~td~~~-----------~~~I~~~~~dG~--------~~~~l~~----~~~~~p~glavd~~~~~LY~~d--~~ 136 (713)
+++||++-... ..+|.|+.++.. ..++|+. ...+....|+|++ +++||++- ..
T Consensus 82 ~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~ 160 (463)
T 2wg3_C 82 KNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGM 160 (463)
T ss_dssp HHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTT
T ss_pred CCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCCC
Confidence 68899875321 127888877531 2344442 2356678899997 56999983 11
Q ss_pred ---------------CCcEEEEeCCCC--------------------ceeEEEecCCCCccceeeeeeCC--------eE
Q psy6570 137 ---------------ARTIESINLNGK--------------------DRFVVYHTEDNGYKPYKLEVFED--------NL 173 (713)
Q Consensus 137 ---------------~~~I~~~~~~g~--------------------~~~~~~~~~~~~~~p~~i~~~~~--------~l 173 (713)
.++|+|++.||. ..+++.. .+++|.+|+++.. +|
T Consensus 161 ~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~---G~RNp~gla~dp~tg~~~G~l~~ 237 (463)
T 2wg3_C 161 ITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAH---GLHDPGRCAVDRHPTDININLTI 237 (463)
T ss_dssp CCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEE---CCSSCCBEEEESSCSSTTCSEEE
T ss_pred CCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEE---CCCCcceEEECCCCCCcccceEE
Confidence 357999999994 1244444 3789999999843 67
Q ss_pred EEEeC
Q psy6570 174 YFSTY 178 (713)
Q Consensus 174 y~td~ 178 (713)
|.+|.
T Consensus 238 ~~~D~ 242 (463)
T 2wg3_C 238 LCSDS 242 (463)
T ss_dssp EEECC
T ss_pred Eeccc
Confidence 77885
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.8e-14 Score=144.12 Aligned_cols=177 Identities=21% Similarity=0.343 Sum_probs=135.8
Q ss_pred CCceeEEEccCcccEE--ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCC
Q psy6570 6 SGNVTRVKREMNLKTV--LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLS 83 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~--~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~ 83 (713)
.++|+++++++..... ...+..|.+|++|+. ++||+++. ..+.|.+++.............+..|.+|++|+ +
T Consensus 86 ~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~-g~l~v~~~---~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~ 160 (270)
T 1rwi_B 86 NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQ-GAVYVADR---GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-S 160 (270)
T ss_dssp TTEEEEECTTCSCCEECCCCSCSSEEEEEECTT-CCEEEEEG---GGTEEEEECTTCCSCEECCCCSCCSCCCEEECT-T
T ss_pred CCEEEEEeCCCceEeeeecCCcCCCcceEECCC-CCEEEEEC---CCCEEEEEECCCceeEeeccccCCCceeEEEeC-C
Confidence 6778888888755433 245678999999974 67999998 678999997654433333334467899999997 5
Q ss_pred CcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccc
Q psy6570 84 GRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKP 163 (713)
Q Consensus 84 ~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p 163 (713)
+.||+++.... +|.++++++..........+..|.+|++|+. ++||+++...++|.+++.++.....+... .+..|
T Consensus 161 g~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~~~~~~~~~~~--~~~~p 236 (270)
T 1rwi_B 161 GNVYVTDTDNN-RVVKLEAESNNQVVLPFTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAGSTTSTVLPFT--GLNTP 236 (270)
T ss_dssp CCEEEEEGGGT-EEEEECTTTCCEEECCCSSCCSEEEEEECTT-CCEEEEETTTSCEEEECTTCSCCEECCCC--SCSCE
T ss_pred CCEEEEECCCC-EEEEEecCCCceEeecccCCCCceEEEECCC-CCEEEEECCCCcEEEEcCCCCcceeeccC--CCCCc
Confidence 67999998766 8999999987655544445688999999965 59999999999999999988765443222 34678
Q ss_pred eeeeee-CCeEEEEeCCCCcEEEEcccCC
Q psy6570 164 YKLEVF-EDNLYFSTYRTNNILKINKFGN 191 (713)
Q Consensus 164 ~~i~~~-~~~ly~td~~~~~i~~~~~~~~ 191 (713)
.+|+++ +++||+++...++|.++++...
T Consensus 237 ~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 237 LAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred eeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 999987 5689999999999999987543
|
| >2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=9.6e-16 Score=162.99 Aligned_cols=179 Identities=26% Similarity=0.625 Sum_probs=114.4
Q ss_pred ecCCCCCCeeecCCCcccCCccccCCCCCCCCCCceeeCCCCCC-------CCCceeeCCCCcccCCCCccCCCCCCCCC
Q psy6570 322 EFDDDFDPHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHP-------EPTYKCHCAPSYTGARCESRICENKCHNG 394 (713)
Q Consensus 322 ~~~~~~~~~C~C~~g~~G~~C~~~~c~~~~C~~~~~C~~~~~~~-------~~~~~C~C~~G~~g~~C~~~~C~~~C~~~ 394 (713)
.....+++.|.|+.+|.++.++...- ...+.+.+.+....... ...+.|.|++||.|..|+. .|. +|.++
T Consensus 132 ~~~~nGs~~~~~p~~~~~~~~~~~~~-~~~~~d~g~y~~~~~~g~~~~~~~~~~~~c~C~~g~~G~~C~~-~C~-~C~~~ 208 (423)
T 2gy5_A 132 VIYKNGSFIHSVPRHEVPDILEVHLP-HAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNH-LCT-ACMNN 208 (423)
T ss_dssp EEEETTEEEEEECGGGCCSEEEEEET-TCCGGGCEEEEEEETTCCGGGCEEEEEEECSSCTTEESTTSCE-ECC-CCCTT
T ss_pred EEEcCCeEeeccCccccCCeEEeccC-cCCCCCCCeEeeEECCCcEeccccccccCCcCCCCCCCCCCCC-CCC-CCCCC
Confidence 33457788999999999988875322 22344444443211100 0023466777777777664 342 56677
Q ss_pred CEEEcCCCeeeCCCCCccCCCCcCCCCCCCCCcEeccCCCCccccCCCCCcCCCCccCCCCC--CCC-CCeeecCCCCCe
Q psy6570 395 GTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKN--YCV-NGECSITDSGPK 471 (713)
Q Consensus 395 ~~C~~~~~~C~C~~g~~g~~C~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~C~~~~C~~--~~~-~~~C~~~~~~~~ 471 (713)
|+|.+.++.|.|++||+|..|+. .|.++|+|..|.. .|.. .|. ++.|. .+.++
T Consensus 209 G~C~~~~g~C~C~~G~~G~~Ce~---------------------~C~~g~~g~~C~~-~C~~~~~C~~~g~C~--~~~~~ 264 (423)
T 2gy5_A 209 GVCHEDTGECICPPGFMGRTCEK---------------------ACELHTFGRTCKE-RCSGQEGCKSYVFCL--PDPYG 264 (423)
T ss_dssp CEECTTTCCEECCTTEESTTSCE---------------------ECCTTEESTTSCE-ECCSTTTTTTCCEEE--TTTTE
T ss_pred CEEECCCCcEeCCCCccCCCccc---------------------ccCCCCCCCCcCc-cCCCCCCCCCCCEEC--CCCCe
Confidence 77766566777777777776652 1444555555541 3432 243 36674 45679
Q ss_pred ecCCCCccCCCCCCccccCCCCCCcccCCCCccCCCCC-CCCCCCCcEEcCCCCCeeccCCCCCCCCCCccc
Q psy6570 472 CMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCD-TCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECA 542 (713)
Q Consensus 472 C~C~~G~~g~~C~~~~C~~~~~~~~C~C~~G~~g~~C~-~~~C~~~g~C~~~~~~~~C~C~~g~~G~~C~~~ 542 (713)
|.|.+||+|..|+. .|.+||.|..|+ .++|.++++|.+.. .|.|++||+|..|+..
T Consensus 265 C~C~~G~~G~~C~~------------~C~~G~~G~~C~~~C~C~ngg~C~~~~---~C~C~~G~~G~~Ce~~ 321 (423)
T 2gy5_A 265 CSCATGWKGLQCNE------------ACHPGFYGPDCKLRCSCNNGEMCDRFQ---GCLCSPGWQGLQCERE 321 (423)
T ss_dssp EECCBTCBSGGGCB------------CCCTTBCSBTTCCBCCCTTCCEEETTT---EEECCTTCBSTTSCBC
T ss_pred EEeCCCcccccccC------------ccCCCCcCCcccccccCCCCCEecCCC---ceECCCCCcCCCCccC
Confidence 99999999988875 488889888886 56788888887653 3888888888888743
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.9e-14 Score=143.55 Aligned_cols=175 Identities=12% Similarity=0.213 Sum_probs=132.7
Q ss_pred CCceeEEEccCcccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCc
Q psy6570 6 SGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGR 85 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ 85 (713)
...|+++++++..++.+.. -.+.++.+.++.|||++........|++++++|+.++.|..... +++||..+.
T Consensus 87 ~~~Iy~i~~dg~~~~~l~~---~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~-----~~~~~~g~~ 158 (302)
T 3s25_A 87 RNSLCRIKRNGHGSTVLDP---DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL-----FTCNTSDRY 158 (302)
T ss_dssp SEEEEEEETTSCCCEEEEC---SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC-----CCSEEETTE
T ss_pred CCeEEEEeCCCCcceEeec---CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc-----eEeeEECCE
Confidence 5689999999976544332 22345666789999999211156789999999999888886543 456888999
Q ss_pred EEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCC-CcEEEEeCCCCceeEEEecCCCCccce
Q psy6570 86 MFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKA-RTIESINLNGKDRFVVYHTEDNGYKPY 164 (713)
Q Consensus 86 ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~-~~I~~~~~~g~~~~~~~~~~~~~~~p~ 164 (713)
|||++.+.. +|++++++|+.+++|+.. +..++++|..++|||+++.. .+|++++++|+.+++|.... + |
T Consensus 159 iy~t~~g~~-~Iy~~~l~g~~~~~l~~~----~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~--~--~- 228 (302)
T 3s25_A 159 FYYNNPKNG-QLYRYDTASQSEALFYDC----NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEAN--I--E- 228 (302)
T ss_dssp EEEECTTTC-CEEEEETTTTEEEEEECS----CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSC--E--E-
T ss_pred EEEEeCCCc-eEEEEECCCCCEEEEeCC----CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCC--c--c-
Confidence 999998545 999999999988877642 33456778899999999754 68999999999988876542 2 3
Q ss_pred eeeeeCCeEEEE-eCCCCcEEEEcccCCCcceeee
Q psy6570 165 KLEVFEDNLYFS-TYRTNNILKINKFGNSDFNVLA 198 (713)
Q Consensus 165 ~i~~~~~~ly~t-d~~~~~i~~~~~~~~~~~~~~~ 198 (713)
.+++.+++|||+ +.....|.+++.+|..+..+..
T Consensus 229 ~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~ 263 (302)
T 3s25_A 229 HYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAK 263 (302)
T ss_dssp EEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEE
T ss_pred eEEECCCEEEEEECCCCcEEEEEECCCCccEEeeC
Confidence 388889999997 5556889999998776655543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-13 Score=142.53 Aligned_cols=201 Identities=14% Similarity=0.201 Sum_probs=146.1
Q ss_pred CCcccCCceeEEEccCcccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcC----CCCCcce
Q psy6570 1 MASISSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNT----GLNEPYD 76 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~----~~~~p~~ 76 (713)
++|+..++|+++++++.....+.....|.+|++++.+ +||++.. ..|.++++++...+.+... ....|++
T Consensus 29 ~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG-~l~v~~~-----~~l~~~d~~~g~~~~~~~~~~~~~~~~~~d 102 (297)
T 3g4e_A 29 FVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSG-GYVATIG-----TKFCALNWKEQSAVVLATVDNDKKNNRFND 102 (297)
T ss_dssp EEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTS-SEEEEET-----TEEEEEETTTTEEEEEEECCTTCSSEEEEE
T ss_pred EEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCC-CEEEEEC-----CeEEEEECCCCcEEEEEecCCCCCCCCCCC
Confidence 3577889999999987654444555789999999764 5777653 5899999986655555432 2456899
Q ss_pred EEEcCCCCcEEEEccC----------CCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCC
Q psy6570 77 IALEPLSGRMFWTELG----------IKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLN 146 (713)
Q Consensus 77 iavD~~~~~ly~td~~----------~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~ 146 (713)
|++|+ +|+||++++. ....|++++.+|+... +...+..|++|+++++++.|||++...++|++++++
T Consensus 103 i~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~--~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d 179 (297)
T 3g4e_A 103 GKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK--YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYD 179 (297)
T ss_dssp EEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE--EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEEC
T ss_pred EEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEE--EeeccccccceEEcCCCCEEEEecCCCCcEEEEecc
Confidence 99997 6779998743 1237899988865433 334577899999999888999999999999999875
Q ss_pred ---CC--ceeEEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEE
Q psy6570 147 ---GK--DRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLIL 210 (713)
Q Consensus 147 ---g~--~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~ 210 (713)
|. .++++.........|.+|+++ +++||++.+..++|.++++.++.....+......++.+.+.
T Consensus 180 ~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 180 LQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFG 249 (297)
T ss_dssp TTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEE
T ss_pred CCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEe
Confidence 32 233444332223578999997 67999999999999999987666655655555566666664
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=7.4e-14 Score=145.38 Aligned_cols=180 Identities=16% Similarity=0.228 Sum_probs=132.0
Q ss_pred CcccCCceeEEEccCcc-cEEe--------------------cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCC
Q psy6570 2 ASISSGNVTRVKREMNL-KTVL--------------------SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEG 60 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~-~~~~--------------------~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G 60 (713)
++..+++|+++++++.. +.+. ..+..|.||++|+..++||++|. . +.|.++++++
T Consensus 35 v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~---~-~~i~~~d~~~ 110 (322)
T 2fp8_A 35 TSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC---Y-YHLSVVGSEG 110 (322)
T ss_dssp EECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET---T-TEEEEECTTC
T ss_pred EEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC---C-CCEEEEeCCC
Confidence 45667889999887643 2221 11357999999976789999997 3 5589999886
Q ss_pred ceEEEEEc----CCCCCcceEEEcCCCCcEEEEccCC----------------CCeEEEEecCCCCcEEEEeCCCCCCee
Q psy6570 61 RKKRTLLN----TGLNEPYDIALEPLSGRMFWTELGI----------------KPRISGASIDGKNKFNLVDNNIQWPTG 120 (713)
Q Consensus 61 ~~~~~l~~----~~~~~p~~iavD~~~~~ly~td~~~----------------~~~I~~~~~dG~~~~~l~~~~~~~p~g 120 (713)
...+++.. ..+..|++|++|+.+|.||++|... ..+|++++.++...+.+. ..+..|+|
T Consensus 111 g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~g 189 (322)
T 2fp8_A 111 GHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL-KELHVPGG 189 (322)
T ss_dssp EECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE-EEESCCCE
T ss_pred CEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec-cCCccCcc
Confidence 55554432 1256799999997578999999652 247899988755444443 35788999
Q ss_pred EEEeCCCCeEEEEcCCCCcEEEEeCCCC---ceeEEEecCCCCccceeeeee-CCeEEEEeCC----------CCcEEEE
Q psy6570 121 ITIDYPSQRLYWADPKARTIESINLNGK---DRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYR----------TNNILKI 186 (713)
Q Consensus 121 lavd~~~~~LY~~d~~~~~I~~~~~~g~---~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~----------~~~i~~~ 186 (713)
|++++++++|||+|...++|+++++++. ..+++... .. |.+|+++ +++||++++. .+.|.++
T Consensus 190 ia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~ 265 (322)
T 2fp8_A 190 AEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKF 265 (322)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEE
T ss_pred eEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEE
Confidence 9999888889999999999999999873 33444331 22 9999988 5689999876 4678888
Q ss_pred cccC
Q psy6570 187 NKFG 190 (713)
Q Consensus 187 ~~~~ 190 (713)
++.+
T Consensus 266 d~~G 269 (322)
T 2fp8_A 266 DEFG 269 (322)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 8753
|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-14 Score=161.46 Aligned_cols=111 Identities=30% Similarity=0.770 Sum_probs=90.5
Q ss_pred CCCCCcEEcCCCCCeeccCC------CCCCCCCCcccCCCCCCCCCCCCCCC---CCCCC--CcEEeecCCCceeeCCCC
Q psy6570 512 TCLNGGTCIPNSKNNVCKCP------SQYTGRRCECAVGDTSCASLANKCTP---NYCSN--NGTCVLIEGKPSCKCLPP 580 (713)
Q Consensus 512 ~C~~~g~C~~~~~~~~C~C~------~g~~G~~C~~~~~~~~c~~~~~~C~~---~~C~~--~~~C~~~~g~~~C~C~~G 580 (713)
+|.++|+|.. ++|.|+ +||.|..|+.+ ...|.. .+|.+ +|+|.. .+|.|++|
T Consensus 483 ~Cs~~G~C~~----G~C~C~~~~~~~~G~~G~~Ce~~---------~~~C~~~~~~~C~~~~~G~C~~----g~C~C~~G 545 (687)
T 3k6s_B 483 ICSGLGDCVC----GQCLCHTSDVPGKLIYGQYCECD---------TINCERYNGQVCGGPGRGLCFC----GKCRCHPG 545 (687)
T ss_dssp GGGSSEEEET----TEEEECCCCSTTCCEESTTSCEE---------SSCSCEETTEETSHHHHEEEET----TEEEECTT
T ss_pred cCCCCCEEeC----CEEEcCCCCCCCCCccccccccc---------cccccCCCCcCcCCCCCCeEEC----CEEEcCCC
Confidence 5889999983 499999 99999999865 345652 36988 899984 38999999
Q ss_pred CcCCCCCcCCCCCCCCC----CCCCCCeEecCCCCcceeecCCCcccCCCCcCCCCCCCCCCCCeecC
Q psy6570 581 YSGKQCTEREDSPSCHN----YCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCAHFCFNGGTCRE 644 (713)
Q Consensus 581 ~~G~~C~~~~~~~~C~~----~C~~~g~C~~~~~g~~~C~C~~G~~G~~C~~~~~C~~~C~~~~~C~~ 644 (713)
|+|..|+.....+.|.. +|.++|+|.. ++|.|++||+|..|+....|..+|.+++.|+.
T Consensus 546 ~~G~~Cec~~~~~~C~~~~g~~Cs~~G~C~~-----g~C~C~~Gy~G~~Ce~c~~C~~~C~~~g~Cv~ 608 (687)
T 3k6s_B 546 FEGSACQCERTTEGCLNPRRVECSGRGRCRC-----NVCECHSGYQLPLCQECPGCPSPCGKYISCAE 608 (687)
T ss_dssp CCSTTSCSCCSSCTTBCTTCSBTSSSCCBCS-----SCBCCSTTCCTTTTCCCTTSCCCCTTTHHHHT
T ss_pred CcCCCCccCCCCCCCCCCCCCCCCCCCcCCC-----CEEECCCCCcCCCCCCCCCCCcccCCCCCCCc
Confidence 99999984333467743 6999999975 35999999999999986678889999999975
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-13 Score=140.49 Aligned_cols=200 Identities=12% Similarity=0.024 Sum_probs=138.9
Q ss_pred CCcccCCceeEEEccCcccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEec-CCceEEEEEcCCCCCcceEEE
Q psy6570 1 MASISSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTL-EGRKKRTLLNTGLNEPYDIAL 79 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~-~G~~~~~l~~~~~~~p~~iav 79 (713)
|+|..+++|+++++++....++.....|.+|++|+. ++||+++.+. ...+|++++. +|+...+........|.++++
T Consensus 47 v~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~d-G~l~vad~~~-~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~ 124 (306)
T 2p4o_A 47 VTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSN-GDLVATGWNA-DSIPVVSLVKSDGTVETLLTLPDAIFLNGITP 124 (306)
T ss_dssp EEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTT-SCEEEEEECT-TSCEEEEEECTTSCEEEEEECTTCSCEEEEEE
T ss_pred EEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCC-CcEEEEeccC-CcceEEEEcCCCCeEEEEEeCCCccccCcccc
Confidence 467778999999998865555555678999999976 5699999721 1235888775 454433332234567889988
Q ss_pred cCCCCcEEEEccCCCCeEEEEecCCCCcEEE-E---------eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCC-
Q psy6570 80 EPLSGRMFWTELGIKPRISGASIDGKNKFNL-V---------DNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGK- 148 (713)
Q Consensus 80 D~~~~~ly~td~~~~~~I~~~~~dG~~~~~l-~---------~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~- 148 (713)
+ ..+++|++|.... +|++++.++...++. . ...+..|+|| ++++++|||+|...++|+++++++.
T Consensus 125 ~-~~~~~~v~d~~~g-~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g 200 (306)
T 2p4o_A 125 L-SDTQYLTADSYRG-AIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTD 200 (306)
T ss_dssp S-SSSEEEEEETTTT-EEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTS
T ss_pred c-CCCcEEEEECCCC-eEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCC
Confidence 6 4778999997666 999999875322221 1 1245689999 4457899999999999999999852
Q ss_pred ---ceeEEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCc-ceeeeccccccccEEEE
Q psy6570 149 ---DRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSD-FNVLANNLNRASDVLIL 210 (713)
Q Consensus 149 ---~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~i~v~ 210 (713)
.++++.. +..|.+|+++ +++||++++..++|.++++.+... ...+...+..|..+++.
T Consensus 201 ~~~~~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 201 KPGEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp CBCCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEEC
T ss_pred CCCccEEEec----cCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEe
Confidence 2333332 3578999988 678999999999999999763221 11122344567777664
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-12 Score=133.72 Aligned_cols=178 Identities=16% Similarity=0.206 Sum_probs=134.3
Q ss_pred cccCCceeEEEccCcccEEe-c-CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEc
Q psy6570 3 SISSGNVTRVKREMNLKTVL-S-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80 (713)
Q Consensus 3 d~~~~~I~~~~~~~~~~~~~-~-~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD 80 (713)
+...++|.++++++....+. . ....|.+|++|+ .++||+++. ..+.|.+++++|+............|.+|++|
T Consensus 79 ~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~---~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d 154 (300)
T 2qc5_A 79 ENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGL-NGDIWFTQL---NGDRIGKLTADGTIYEYDLPNKGSYPAFITLG 154 (300)
T ss_dssp ETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECS-TTCEEEEET---TTTEEEEECTTSCEEEEECSSTTCCEEEEEEC
T ss_pred ecCCCeEEEECCCCCeEEecCCCCCCCCccceECC-CCCEEEEcc---CCCeEEEECCCCCEEEccCCCCCCCceeEEEC
Confidence 34457788888875443332 2 357799999996 578999997 67899999999766544444456789999999
Q ss_pred CCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCC
Q psy6570 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNG 160 (713)
Q Consensus 81 ~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 160 (713)
+ ++.||+++.... .|++++.+|+.....+...+..|.+|++|+ +++||+++...++|++++.+|........ ...
T Consensus 155 ~-~g~l~v~~~~~~-~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~--~~~ 229 (300)
T 2qc5_A 155 S-DNALWFTENQNN-SIGRITNTGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITTTGEISEYDIP--TPN 229 (300)
T ss_dssp T-TSSEEEEETTTT-EEEEECTTCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEEEECS--STT
T ss_pred C-CCCEEEEecCCC-eEEEECCCCcEEEeeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEcCCCcEEEEECC--CCC
Confidence 6 567999997766 899999977654432234567899999996 57999999988999999997654433222 235
Q ss_pred ccceeeeee-CCeEEEEeCCCCcEEEEccc
Q psy6570 161 YKPYKLEVF-EDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 161 ~~p~~i~~~-~~~ly~td~~~~~i~~~~~~ 189 (713)
..|.+|+++ +++||+++...+.|.+++..
T Consensus 230 ~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 230 ARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp CCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred CCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 678999987 56899999888999999874
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-12 Score=132.97 Aligned_cols=174 Identities=10% Similarity=0.169 Sum_probs=131.9
Q ss_pred CCceeEEEccCcccEE--ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEc-CCCCCcceEEEcCC
Q psy6570 6 SGNVTRVKREMNLKTV--LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLN-TGLNEPYDIALEPL 82 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~--~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~-~~~~~p~~iavD~~ 82 (713)
++.|.+++.++..... ...+..|.+|++|+. ++||+++. ..++|.+++++|+....+.. ..+..|.+|++|+
T Consensus 99 ~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~---~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~- 173 (286)
T 1q7f_A 99 THQIQIYNQYGQFVRKFGATILQHPRGVTVDNK-GRIIVVEC---KVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVND- 173 (286)
T ss_dssp GCEEEEECTTSCEEEEECTTTCSCEEEEEECTT-SCEEEEET---TTTEEEEECTTSCEEEEEECTTTCSSEEEEEECS-
T ss_pred CCEEEEECCCCcEEEEecCccCCCceEEEEeCC-CCEEEEEC---CCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECC-
Confidence 5677777766643222 234568999999975 57999998 67899999999987666543 3467899999997
Q ss_pred CCcEEEEccCCCCeEEEEecCCCCcEEEEeC-CCCCCeeEEEeCCCCeEEEEcCCCC-cEEEEeCCCCceeEEEecCCCC
Q psy6570 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDN-NIQWPTGITIDYPSQRLYWADPKAR-TIESINLNGKDRFVVYHTEDNG 160 (713)
Q Consensus 83 ~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~-~~~~p~glavd~~~~~LY~~d~~~~-~I~~~~~~g~~~~~~~~~~~~~ 160 (713)
++.||+++...+ +|.+++.+|.....+... .+..|.+|++|+ +++||+++...+ +|.+++.+|.....+.... ..
T Consensus 174 ~g~l~v~~~~~~-~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~-~~ 250 (286)
T 1q7f_A 174 KQEIFISDNRAH-CVKVFNYEGQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLISALESKV-KH 250 (286)
T ss_dssp SSEEEEEEGGGT-EEEEEETTCCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEEEEEEESS-CC
T ss_pred CCCEEEEECCCC-EEEEEcCCCCEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCCCEEEEEcccC-CC
Confidence 678999998767 899999988755554332 257899999996 569999998886 9999999987766665432 24
Q ss_pred ccceeeeee-CCeEEEEeCCCCcEEEEcc
Q psy6570 161 YKPYKLEVF-EDNLYFSTYRTNNILKINK 188 (713)
Q Consensus 161 ~~p~~i~~~-~~~ly~td~~~~~i~~~~~ 188 (713)
..|.+|+++ +++||+++. .++|..++.
T Consensus 251 ~~~~~i~~~~~g~l~vs~~-~~~v~v~~~ 278 (286)
T 1q7f_A 251 AQCFDVALMDDGSVVLASK-DYRLYIYRY 278 (286)
T ss_dssp SCEEEEEEETTTEEEEEET-TTEEEEEEC
T ss_pred CcceeEEECCCCcEEEECC-CCeEEEEEc
Confidence 468888887 568999975 677777654
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-12 Score=131.84 Aligned_cols=178 Identities=19% Similarity=0.224 Sum_probs=132.3
Q ss_pred cccCCceeEEEccCcccEE-e-cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEc
Q psy6570 3 SISSGNVTRVKREMNLKTV-L-SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80 (713)
Q Consensus 3 d~~~~~I~~~~~~~~~~~~-~-~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD 80 (713)
+...+.|.++++++....+ . ..+..|.+|++|. .+.||+++. ..++|.+++++|+............|.+|++|
T Consensus 37 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~---~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~ 112 (300)
T 2qc5_A 37 QHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSS-LGDIWFTEN---GANKIGKLSKKGGFTEYPLPQPDSGPYGITEG 112 (300)
T ss_dssp ETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECT-TSCEEEEET---TTTEEEEECTTSCEEEEECSSTTCCEEEEEEC
T ss_pred cCCCCeEEEECCCCceEEEECCCCCCcceeEEECC-CCCEEEEec---CCCeEEEECCCCCeEEecCCCCCCCCccceEC
Confidence 3446778888877433332 1 2357899999995 478999997 67899999999766544333345789999999
Q ss_pred CCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCC
Q psy6570 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNG 160 (713)
Q Consensus 81 ~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 160 (713)
+ ++.||+++.... .|.+++++|+.....+......|.+|++|+ .++||+++...+.|++++.+|.... +. .....
T Consensus 113 ~-~g~l~v~~~~~~-~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~-~~-~~~~~ 187 (300)
T 2qc5_A 113 L-NGDIWFTQLNGD-RIGKLTADGTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITNTGKLEE-YP-LPTNA 187 (300)
T ss_dssp S-TTCEEEEETTTT-EEEEECTTSCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEE-EE-CSSTT
T ss_pred C-CCCEEEEccCCC-eEEEECCCCCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECCCCcEEE-ee-CCCCC
Confidence 6 788999997666 899999986544332333567899999996 4669999998899999999766543 22 22235
Q ss_pred ccceeeeee-CCeEEEEeCCCCcEEEEccc
Q psy6570 161 YKPYKLEVF-EDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 161 ~~p~~i~~~-~~~ly~td~~~~~i~~~~~~ 189 (713)
..|.+|+++ ++.||+++...+.|++++..
T Consensus 188 ~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 217 (300)
T 2qc5_A 188 AAPVGITSGNDGALWFVEIMGNKIGRITTT 217 (300)
T ss_dssp CCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred CCcceEEECCCCCEEEEccCCCEEEEEcCC
Confidence 678899987 67899999888899999873
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.9e-13 Score=137.14 Aligned_cols=177 Identities=15% Similarity=0.086 Sum_probs=129.0
Q ss_pred ceeEEEccCcc-cEEe-----cCCCCCceEEEeccCCeEEEeecCC--------------CCCCeEEEEecCCceEEEEE
Q psy6570 8 NVTRVKREMNL-KTVL-----SNLHDPRGVAVDWVGKNLYWTDAGG--------------RSSNNIMVSTLEGRKKRTLL 67 (713)
Q Consensus 8 ~I~~~~~~~~~-~~~~-----~~~~~p~gla~D~~~~~ly~td~~~--------------~~~~~I~~~~~~G~~~~~l~ 67 (713)
.|.++++++.. +++. ..+..|.+|++|+..++||++|... ...++|+++++++...+.+.
T Consensus 102 ~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~ 181 (322)
T 2fp8_A 102 HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL 181 (322)
T ss_dssp EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE
T ss_pred CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec
Confidence 37777776432 3332 1346799999997457999999731 01367999998765555443
Q ss_pred cCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCC---CcEEEEeCCCCCCeeEEEeCCCCeEEEEcCC--------
Q psy6570 68 NTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGK---NKFNLVDNNIQWPTGITIDYPSQRLYWADPK-------- 136 (713)
Q Consensus 68 ~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~---~~~~l~~~~~~~p~glavd~~~~~LY~~d~~-------- 136 (713)
..+..|++|++++..+.||++|...+ +|+++++++. ..+++.. ... |.+|++|+ +++||+++..
T Consensus 182 -~~~~~p~gia~~~dg~~lyv~d~~~~-~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~-~G~l~va~~~~~~~~~~~ 256 (322)
T 2fp8_A 182 -KELHVPGGAEVSADSSFVLVAEFLSH-QIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNA-DGHFWVSSSEELDGNMHG 256 (322)
T ss_dssp -EEESCCCEEEECTTSSEEEEEEGGGT-EEEEEESSSTTTTCEEEEEE-CSS-EEEEEECT-TSCEEEEEEEETTSSTTS
T ss_pred -cCCccCcceEECCCCCEEEEEeCCCC-eEEEEECCCCcCCccceEEe-CCC-CCCeEECC-CCCEEEEecCcccccccC
Confidence 34688999999987778999998877 9999999873 2334433 223 99999996 5689999865
Q ss_pred --CCcEEEEeCCCCceeEEEecC-CCCccceeeeeeCCeEEEEeCCCCcEEEEccc
Q psy6570 137 --ARTIESINLNGKDRFVVYHTE-DNGYKPYKLEVFEDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 137 --~~~I~~~~~~g~~~~~~~~~~-~~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~ 189 (713)
.++|.+++.+|.....+.... ..+..|.++...+++||+++...++|.+++..
T Consensus 257 ~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 257 RVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp CEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred CCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 578999999987666555432 12456778887889999999999999999864
|
| >2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=8.5e-14 Score=148.04 Aligned_cols=174 Identities=24% Similarity=0.605 Sum_probs=115.8
Q ss_pred CeeecCCCcccCCccccCCCCCCCCCCceeeCCCCCCCCCceeeCCCCcccCCCCcc------------CCC--CCCCCC
Q psy6570 329 PHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESR------------ICE--NKCHNG 394 (713)
Q Consensus 329 ~~C~C~~g~~G~~C~~~~c~~~~C~~~~~C~~~~~~~~~~~~C~C~~G~~g~~C~~~------------~C~--~~C~~~ 394 (713)
..|.|++||+|+.|+. .| .||.++|.|.+. +++|.|++||+|..|+.. .|. ..|.++
T Consensus 185 ~~c~C~~g~~G~~C~~-~C--~~C~~~G~C~~~------~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~~~~~C~~~ 255 (423)
T 2gy5_A 185 IVRRCEAQKWGPECNH-LC--TACMNNGVCHED------TGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSY 255 (423)
T ss_dssp EECSSCTTEESTTSCE-EC--CCCCTTCEECTT------TCCEECCTTEESTTSCEECCTTEESTTSCEECCSTTTTTTC
T ss_pred cCCcCCCCCCCCCCCC-CC--CCCCCCCEEECC------CCcEeCCCCccCCCcccccCCCCCCCCcCccCCCCCCCCCC
Confidence 4577888888887775 23 267777888652 457888888888877742 232 457777
Q ss_pred CEEEcCCCeeeCCCCCccCCCCcCCCCCCCCCcEeccCCCCccccCCCCCcCCCCccCCCCCCC-CCCeeecCCCCCeec
Q psy6570 395 GTCIATTQTCVCPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYC-VNGECSITDSGPKCM 473 (713)
Q Consensus 395 ~~C~~~~~~C~C~~g~~g~~C~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~C~~~~C~~~~-~~~~C~~~~~~~~C~ 473 (713)
+.|...++.|.|++||+|..|+. .|.+||+|..|+. .| .| +++.|.+.. .|.
T Consensus 256 g~C~~~~~~C~C~~G~~G~~C~~---------------------~C~~G~~G~~C~~-~C--~C~ngg~C~~~~---~C~ 308 (423)
T 2gy5_A 256 VFCLPDPYGCSCATGWKGLQCNE---------------------ACHPGFYGPDCKL-RC--SCNNGEMCDRFQ---GCL 308 (423)
T ss_dssp CEEETTTTEEECCBTCBSGGGCB---------------------CCCTTBCSBTTCC-BC--CCTTCCEEETTT---EEE
T ss_pred CEECCCCCeEEeCCCcccccccC---------------------ccCCCCcCCcccc-cc--cCCCCCEecCCC---ceE
Confidence 88887788999999999987762 4777888887763 23 23 356787664 488
Q ss_pred CCCCccCCCCCCccccCC-----CCCCcccCCCCccCCCCCCCCCCCC---cEEcCCCCCeeccCCCCCCCCCC
Q psy6570 474 CSPGYSGKKCDTCTCLNG-----DSGPKCMCSPGYSGKKCDTCTCLNG---GTCIPNSKNNVCKCPSQYTGRRC 539 (713)
Q Consensus 474 C~~G~~g~~C~~~~C~~~-----~~~~~C~C~~G~~g~~C~~~~C~~~---g~C~~~~~~~~C~C~~g~~G~~C 539 (713)
|.+||+|..|+...+... .....|.|.+||+|..|....|... .... ....+.|.++.+|.+...
T Consensus 309 C~~G~~G~~Ce~~~~~~~~~~~~~~~~~~~c~~g~~g~~C~~~~~~~~~~~~~~~-~~~~G~cl~~~~~~~~d~ 381 (423)
T 2gy5_A 309 CSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMTL-VKPDGTVLHPKDFNHTDH 381 (423)
T ss_dssp CCTTCBSTTSCBCSSCCCCCEECSCCSBCCEESEEECCEEEEECTTCCCGGGEEE-ECTTSCEECCSEEEECSS
T ss_pred CCCCCcCCCCccCccCCcCcceecCCCeEEeCCCccCCcccccCCcCCCCceEEE-ECCCeEEEeCCCcCcccc
Confidence 999999988886532211 1234578889999887765444321 1111 123467888887766544
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.4e-12 Score=128.89 Aligned_cols=177 Identities=17% Similarity=0.211 Sum_probs=132.0
Q ss_pred ccCCceeEEEccCcccEEe--cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcC
Q psy6570 4 ISSGNVTRVKREMNLKTVL--SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEP 81 (713)
Q Consensus 4 ~~~~~I~~~~~~~~~~~~~--~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~ 81 (713)
...+.|+++++++..+.+. .....|.+|++|+ .++||+++. ..+.|.+++++|+............|.+|++|+
T Consensus 75 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~---~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~ 150 (299)
T 2z2n_A 75 NAANKIGRITKKGIIKEYTLPNPDSAPYGITEGP-NGDIWFTEM---NGNRIGRITDDGKIREYELPNKGSYPSFITLGS 150 (299)
T ss_dssp TTTTEEEEECTTSCEEEEECSSTTCCEEEEEECT-TSCEEEEET---TTTEEEEECTTCCEEEEECSSTTCCEEEEEECT
T ss_pred CCCCeEEEECCCCcEEEEeCCCcCCCceeeEECC-CCCEEEEec---CCceEEEECCCCCEEEecCCCCCCCCceEEEcC
Confidence 3456788888776543332 2456899999996 478999987 578999999987766554444567899999996
Q ss_pred CCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCc
Q psy6570 82 LSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGY 161 (713)
Q Consensus 82 ~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~ 161 (713)
++.||+++.... .|++++++|+.....+......|.+|++|+. ++||+++...+.|.+++.++.... +. ......
T Consensus 151 -~g~l~v~~~~~~-~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~~~-~~-~~~~~~ 225 (299)
T 2z2n_A 151 -DNALWFTENQNN-AIGRITESGDITEFKIPTPASGPVGITKGND-DALWFVEIIGNKIGRITTSGEITE-FK-IPTPNA 225 (299)
T ss_dssp -TSCEEEEETTTT-EEEEECTTCCEEEEECSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECTTCCEEE-EE-CSSTTC
T ss_pred -CCCEEEEeCCCC-EEEEEcCCCcEEEeeCCCCCCcceeEEECCC-CCEEEEccCCceEEEECCCCcEEE-EE-CCCCCC
Confidence 679999987666 8999998655443323345678999999964 779999988899999999665332 22 222356
Q ss_pred cceeeeee-CCeEEEEeCCCCcEEEEccc
Q psy6570 162 KPYKLEVF-EDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 162 ~p~~i~~~-~~~ly~td~~~~~i~~~~~~ 189 (713)
.|.+|+++ +++||+++...+.|.++++.
T Consensus 226 ~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 226 RPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp CEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred CceeEEECCCCCEEEeccCCceEEEECCC
Confidence 78899987 56899999888999999873
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.7e-12 Score=130.57 Aligned_cols=179 Identities=17% Similarity=0.228 Sum_probs=130.5
Q ss_pred CCcccCCceeEEEccCcccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEc-C--CCCCcceE
Q psy6570 1 MASISSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLN-T--GLNEPYDI 77 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~-~--~~~~p~~i 77 (713)
++++.+++|+++++++..+++......|.+|++|+. ++||+++. ....|.+++++|+....... . .+..|++|
T Consensus 61 ~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~d-G~l~v~~~---~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i 136 (305)
T 3dr2_A 61 WSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQ-QRLVHCEH---GRRAITRSDADGQAHLLVGRYAGKRLNSPNDL 136 (305)
T ss_dssp EEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTT-SCEEEEET---TTTEEEEECTTSCEEEEECEETTEECSCCCCE
T ss_pred EEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCC-CCEEEEEC---CCCEEEEECCCCCEEEEEeccCCCccCCCCCE
Confidence 356778999999987765555666778999999975 67999987 56889999999765433221 1 25679999
Q ss_pred EEcCCCCcEEEEcc--CC--------------CCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCC----
Q psy6570 78 ALEPLSGRMFWTEL--GI--------------KPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKA---- 137 (713)
Q Consensus 78 avD~~~~~ly~td~--~~--------------~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~---- 137 (713)
++|+ +|.||+||. +. ...|++++.++...+.+. .+..|++|+++++++.|||++...
T Consensus 137 ~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~ 213 (305)
T 3dr2_A 137 IVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHG 213 (305)
T ss_dssp EECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---C
T ss_pred EECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCC
Confidence 9996 788999873 11 237999988644444444 677899999999888999999864
Q ss_pred -CcEEEEeCCCCc---eeEEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccC
Q psy6570 138 -RTIESINLNGKD---RFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFG 190 (713)
Q Consensus 138 -~~I~~~~~~g~~---~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~ 190 (713)
++|+++++++.. .+++... ....|.+|.++ +++||++. .+.|+++++.+
T Consensus 214 ~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~lwv~~--~~gv~~~~~~g 267 (305)
T 3dr2_A 214 SVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGWLWSSS--GTGVCVFDSDG 267 (305)
T ss_dssp CCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSCEEECC--SSEEEEECTTS
T ss_pred CCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCCEEEec--CCcEEEECCCC
Confidence 789999987643 2233322 23468888887 56777776 34699998753
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.3e-12 Score=131.05 Aligned_cols=201 Identities=13% Similarity=0.131 Sum_probs=139.6
Q ss_pred CcccCCceeEEEccCcccE-EecCCC------CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCc
Q psy6570 2 ASISSGNVTRVKREMNLKT-VLSNLH------DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEP 74 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~~~-~~~~~~------~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p 74 (713)
++...++|.++++.+.+.+ .+.... .|.+|+++ +++||+++++ ..+.|.++++........+..+ ..|
T Consensus 100 ~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~--~~~lyv~~~~--~~~~v~viD~~t~~~~~~i~~g-~~p 174 (328)
T 3dsm_A 100 TQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY--GKYVYVNCWS--YQNRILKIDTETDKVVDELTIG-IQP 174 (328)
T ss_dssp EEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE--TTEEEEEECT--TCCEEEEEETTTTEEEEEEECS-SCB
T ss_pred EECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE--CCEEEEEcCC--CCCEEEEEECCCCeEEEEEEcC-CCc
Confidence 3345688889988765422 233333 89999994 7899999972 2679999998765444334333 679
Q ss_pred ceEEEcCCCCcEEEEccCC---------CCeEEEEecCCCCcEEEEeC-CCCCCeeEEEeCCCCeEEEEcCCCCcEEEEe
Q psy6570 75 YDIALEPLSGRMFWTELGI---------KPRISGASIDGKNKFNLVDN-NIQWPTGITIDYPSQRLYWADPKARTIESIN 144 (713)
Q Consensus 75 ~~iavD~~~~~ly~td~~~---------~~~I~~~~~dG~~~~~l~~~-~~~~p~glavd~~~~~LY~~d~~~~~I~~~~ 144 (713)
.+|++|+ +|+||++..+. ...|++++++.......+.. ....|++|++++++++||+++. .|++++
T Consensus 175 ~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d 250 (328)
T 3dsm_A 175 TSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMP 250 (328)
T ss_dssp CCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS---SEEEEE
T ss_pred cceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc---EEEEEE
Confidence 9999997 67899998765 23899999875433322322 2347999999999999999986 899999
Q ss_pred CCCCcee--EEEecCCCCccceeeeee--CCeEEEEe----CCCCcEEEEcccCCCcceeeeccccccccEEEEeeccc
Q psy6570 145 LNGKDRF--VVYHTEDNGYKPYKLEVF--EDNLYFST----YRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQ 215 (713)
Q Consensus 145 ~~g~~~~--~~~~~~~~~~~p~~i~~~--~~~ly~td----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q 215 (713)
++..... .+... ....|.+|+++ +++||+++ +..+.|.+++.. +.....+.. ...|.++..-++...
T Consensus 251 ~~t~~~~~~~~~~~--~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~-G~~P~~~~~~~~~~~ 325 (328)
T 3dsm_A 251 VEADRVPVRPFLEF--RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV-GIIPGAFCWKLEHHH 325 (328)
T ss_dssp TTCSSCCSSCSBCC--CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE-EESEEEEEEECCCCC
T ss_pred CCCCceeeeeeecC--CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe-ccCcceEEEeccccc
Confidence 8754431 11111 14578888885 68999999 788999999987 555444443 356777766555443
|
| >2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-13 Score=124.83 Aligned_cols=109 Identities=23% Similarity=0.601 Sum_probs=83.7
Q ss_pred CCCCCCcEEcCCCCCeeccCCCCCCCCCCcccCCCCCCCCCCCCCCCC---CCCCCcEEeecCCCceeeCCCCCcCC---
Q psy6570 511 CTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPN---YCSNNGTCVLIEGKPSCKCLPPYSGK--- 584 (713)
Q Consensus 511 ~~C~~~g~C~~~~~~~~C~C~~g~~G~~C~~~~~~~~c~~~~~~C~~~---~C~~~~~C~~~~g~~~C~C~~G~~G~--- 584 (713)
.+|.++++|++. |+|.|++||+|..-........|. ++++|... +|.++++|+++.++|+|.|++||+|.
T Consensus 7 ~~C~~~~~C~~~---~~C~C~~G~~g~~~~~~~~~~~C~-dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~ 82 (143)
T 2bou_A 7 RWCPQDSSCVNA---TACRCNPGFSSFSEIITTPMETCD-DINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGA 82 (143)
T ss_dssp TTCCTTEEESSS---SCEEECTTEECSSSSBCSTTCCCE-ECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTCC
T ss_pred CcCCCCCEEcCC---CEEeCCCCCcCccccccCCCCcCC-ccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcCc
Confidence 379899999874 899999999984200000011121 26788864 89999999999999999999999987
Q ss_pred ---------CCCcCCCCCCC---CCCCCCCCeEecCCCCcceeecCCCcccCCCC
Q psy6570 585 ---------QCTEREDSPSC---HNYCDNAGLCSYSKQGKPVCTCVNGWSGITCS 627 (713)
Q Consensus 585 ---------~C~~~~~~~~C---~~~C~~~g~C~~~~~g~~~C~C~~G~~G~~C~ 627 (713)
.|++ +++| ..+|.++++|++.. ++|+|.|++||+|....
T Consensus 83 ~~~~~~~~~~C~d---ideC~~~~~~C~~~~~C~n~~-g~y~C~C~~Gy~g~~~~ 133 (143)
T 2bou_A 83 KTFKNESENTCQD---VDECSSGQHQCDSSTVCFNTV-GSYSCRCRPGWKPRHGI 133 (143)
T ss_dssp SCBSSGGGCCEEE---CCHHHHTCCCCCTTSEEEECS-SCEEEECCSSSCBCTTC
T ss_pred cccccCCCCCcCC---ccCccCcCCCCCCCCEEECCC-CCEEeeCCCCcccCCCC
Confidence 4554 4888 37899999999886 99999999999987653
|
| >1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-13 Score=149.40 Aligned_cols=118 Identities=25% Similarity=0.636 Sum_probs=96.2
Q ss_pred CCCCCCCCCCCcEEcCCCC-Ceec-cCCCCCCC--CCCcccCCCCCCCCCCCCCCCCC--CCCCc---EEeecCCCceee
Q psy6570 506 KKCDTCTCLNGGTCIPNSK-NNVC-KCPSQYTG--RRCECAVGDTSCASLANKCTPNY--CSNNG---TCVLIEGKPSCK 576 (713)
Q Consensus 506 ~~C~~~~C~~~g~C~~~~~-~~~C-~C~~g~~G--~~C~~~~~~~~c~~~~~~C~~~~--C~~~~---~C~~~~g~~~C~ 576 (713)
++|...||.++++|+++.+ +|+| .|++||+| ..|+ . +++|..++ |.+++ +|+++.++|+|.
T Consensus 4 DeC~~nPC~~gg~C~n~~~Gsy~C~~C~~GytGdg~~Ce-D---------iDEC~~~p~~C~~gg~~~~CvNt~gsY~C~ 73 (634)
T 1yo8_A 4 DGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCE-D---------LDECALVPDICFSTSKVPRCVNTQPGFHCL 73 (634)
T ss_dssp CGGGGCCSCTTCCEEECTTSCEEECCCCTTBCSCSSSCC-B---------CCTTTTSCCCSCCCSSSCCEEECSSSEEEC
T ss_pred cccCCCCCCCCCEEecCCCCCeECCcCCCccCCCCCCcc-c---------cccccCCCCcccCCccccceeeccCceecc
Confidence 3566679999999999875 5999 99999998 6776 2 57998777 99988 999999999998
Q ss_pred -CCCCCcCCCCCc------------CCCCCCCC---CCCCCCCeEecCC---CCcceeecCCCccc--CCCC---cCCCC
Q psy6570 577 -CLPPYSGKQCTE------------REDSPSCH---NYCDNAGLCSYSK---QGKPVCTCVNGWSG--ITCS---ERVSC 632 (713)
Q Consensus 577 -C~~G~~G~~C~~------------~~~~~~C~---~~C~~~g~C~~~~---~g~~~C~C~~G~~G--~~C~---~~~~C 632 (713)
|++||+|..|+. ..++++|. ++|.++++|++.. .++|+|.|++||+| ..|+ ++++|
T Consensus 74 ~C~~Gy~G~~c~g~g~~~~~~dg~~C~dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~GdG~~Ce~d~DiDeC 153 (634)
T 1yo8_A 74 PCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGW 153 (634)
T ss_dssp CCCTTEEECCCEESSSHHHHSCCCCEEECCTTTTTCCCCCTTEEEEECCTTCSSSEEEEECTTEEESSSSEEECTTSSSS
T ss_pred cCCCCcccCccccccccccccCCCcccccccccCCCcccccCccccccccccccceeeeccCCccccCcccccccCcccc
Confidence 999999887541 11248883 5899999999875 37999999999998 6886 56677
Q ss_pred C
Q psy6570 633 A 633 (713)
Q Consensus 633 ~ 633 (713)
.
T Consensus 154 ~ 154 (634)
T 1yo8_A 154 P 154 (634)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-13 Score=124.67 Aligned_cols=101 Identities=24% Similarity=0.639 Sum_probs=84.6
Q ss_pred CCCCCCcEEeecCCCceeeCCCCCcC---------CCCCcCCCCCCCCC----CCCCCCeEecCCCCcceeecCCCcccC
Q psy6570 558 NYCSNNGTCVLIEGKPSCKCLPPYSG---------KQCTEREDSPSCHN----YCDNAGLCSYSKQGKPVCTCVNGWSGI 624 (713)
Q Consensus 558 ~~C~~~~~C~~~~g~~~C~C~~G~~G---------~~C~~~~~~~~C~~----~C~~~g~C~~~~~g~~~C~C~~G~~G~ 624 (713)
++|.++++|++. |+|.|++||+| ..|+++ ++|.. +|.++++|++.. ++|+|.|++||+|.
T Consensus 7 ~~C~~~~~C~~~---~~C~C~~G~~g~~~~~~~~~~~C~di---deC~~~~~~~C~~~~~C~n~~-g~y~C~C~~Gy~g~ 79 (143)
T 2bou_A 7 RWCPQDSSCVNA---TACRCNPGFSSFSEIITTPMETCDDI---NECATLSKVSCGKFSDCWNTE-GSYDCVCSPGYEPV 79 (143)
T ss_dssp TTCCTTEEESSS---SCEEECTTEECSSSSBCSTTCCCEEC---CGGGC----CCCTTEEEEECS-SCEEEEECTTEEET
T ss_pred CcCCCCCEEcCC---CEEeCCCCCcCccccccCCCCcCCcc---ccccCCCCCCCCCCCEEEcCC-CCeEeECCCCcccC
Confidence 468899999864 89999999998 578765 88832 799999999887 89999999999986
Q ss_pred ------------CCCcCCCCC---CCCCCCCeecCCCCccCCCCCceeeCCCCcccCCCCcc
Q psy6570 625 ------------TCSERVSCA---HFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTL 671 (713)
Q Consensus 625 ------------~C~~~~~C~---~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~~ 671 (713)
.|+++++|. ++|.++++|++ ..++|+|.|++||+|..+...
T Consensus 80 ~~~~~~~~~~~~~C~dideC~~~~~~C~~~~~C~n------~~g~y~C~C~~Gy~g~~~~~~ 135 (143)
T 2bou_A 80 SGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFN------TVGSYSCRCRPGWKPRHGIPN 135 (143)
T ss_dssp TCCSCBSSGGGCCEEECCHHHHTCCCCCTTSEEEE------CSSCEEEECCSSSCBCTTCCS
T ss_pred cCccccccCCCCCcCCccCccCcCCCCCCCCEEEC------CCCCEEeeCCCCcccCCCCcc
Confidence 677778886 68998899987 456799999999999987543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-11 Score=126.02 Aligned_cols=176 Identities=19% Similarity=0.256 Sum_probs=130.1
Q ss_pred ccCCceeEEEccCcccEEe--cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcC
Q psy6570 4 ISSGNVTRVKREMNLKTVL--SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEP 81 (713)
Q Consensus 4 ~~~~~I~~~~~~~~~~~~~--~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~ 81 (713)
...+.|.++++++....+. .....|.+|++|+ .+.||+++. ..+.|.+++++|+............|.+|++|+
T Consensus 33 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~---~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 108 (299)
T 2z2n_A 33 HKANMISCINLDGKITEYPLPTPDAKVMCLTISS-DGEVWFTEN---AANKIGRITKKGIIKEYTLPNPDSAPYGITEGP 108 (299)
T ss_dssp TTTTEEEEECTTCCEEEEECSSTTCCEEEEEECT-TSCEEEEET---TTTEEEEECTTSCEEEEECSSTTCCEEEEEECT
T ss_pred cCCCcEEEEcCCCCeEEecCCcccCceeeEEECC-CCCEEEeCC---CCCeEEEECCCCcEEEEeCCCcCCCceeeEECC
Confidence 3456788888774333332 2457799999996 478999987 678899999987654433333457899999996
Q ss_pred CCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCc
Q psy6570 82 LSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGY 161 (713)
Q Consensus 82 ~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~ 161 (713)
++.||+++.... .|.+++++|+............|.+|++|+ +++||+++...+.|++++.+|........ ....
T Consensus 109 -~g~l~v~~~~~~-~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~--~~~~ 183 (299)
T 2z2n_A 109 -NGDIWFTEMNGN-RIGRITDDGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITESGDITEFKIP--TPAS 183 (299)
T ss_dssp -TSCEEEEETTTT-EEEEECTTCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEEEECS--STTC
T ss_pred -CCCEEEEecCCc-eEEEECCCCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcCCCcEEEeeCC--CCCC
Confidence 689999987655 899999866544333333567899999995 56999999888999999996554332121 2355
Q ss_pred cceeeeee-CCeEEEEeCCCCcEEEEcc
Q psy6570 162 KPYKLEVF-EDNLYFSTYRTNNILKINK 188 (713)
Q Consensus 162 ~p~~i~~~-~~~ly~td~~~~~i~~~~~ 188 (713)
.|.+|+++ ++.||+++...+.|.++++
T Consensus 184 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 184 GPVGITKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp CEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred cceeEEECCCCCEEEEccCCceEEEECC
Confidence 78889887 5789999988889999998
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.2e-12 Score=131.28 Aligned_cols=182 Identities=20% Similarity=0.274 Sum_probs=124.4
Q ss_pred CceeEEEccCcccEE------ecCCCCCceEEEecc---CCeEEEeecCCCC--CCeEEEEecCCc---eEEEEEc----
Q psy6570 7 GNVTRVKREMNLKTV------LSNLHDPRGVAVDWV---GKNLYWTDAGGRS--SNNIMVSTLEGR---KKRTLLN---- 68 (713)
Q Consensus 7 ~~I~~~~~~~~~~~~------~~~~~~p~gla~D~~---~~~ly~td~~~~~--~~~I~~~~~~G~---~~~~l~~---- 68 (713)
++|++++ ++..+.+ ..++..|.||++++. ++.||+++..... .++|.++++++. ..++++.
T Consensus 51 g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~ 129 (352)
T 2ism_A 51 GRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPA 129 (352)
T ss_dssp TEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred CeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCC
Confidence 7788887 5443322 234678999999987 7899999972100 178999998864 2233332
Q ss_pred --CCCCCcceEEEcCCCCcEEEEccC------------CCCeEEEEecCCC-------------CcEEEEeCCCCCCeeE
Q psy6570 69 --TGLNEPYDIALEPLSGRMFWTELG------------IKPRISGASIDGK-------------NKFNLVDNNIQWPTGI 121 (713)
Q Consensus 69 --~~~~~p~~iavD~~~~~ly~td~~------------~~~~I~~~~~dG~-------------~~~~l~~~~~~~p~gl 121 (713)
.....|.+|+++| +|+||+++.. ..++|+|++.||+ ..+ ++...+..|.||
T Consensus 130 ~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~-i~a~G~rnp~g~ 207 (352)
T 2ism_A 130 RPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPE-VYSLGHRNPQGL 207 (352)
T ss_dssp CTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTT-EEEECCSEECCC
T ss_pred CCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCcc-EEEEcCCCcccE
Confidence 2245789999997 6799999732 1258999999983 333 344578889999
Q ss_pred EEeCCCCeEEEEcCCCCc--------EEEEeCCCC--------------ceeEEEecCCCCccceeeeeeCCeEEEEeCC
Q psy6570 122 TIDYPSQRLYWADPKART--------IESINLNGK--------------DRFVVYHTEDNGYKPYKLEVFEDNLYFSTYR 179 (713)
Q Consensus 122 avd~~~~~LY~~d~~~~~--------I~~~~~~g~--------------~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~ 179 (713)
++|+.+++||++|...+. |.++...+. ....+... .....|.+++++++.||++++.
T Consensus 208 a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-~~~~ap~G~~~~~G~l~v~~~~ 286 (352)
T 2ism_A 208 AWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-PQGFPPGNLAFFRGDLYVAGLR 286 (352)
T ss_dssp EECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-TTCCCEEEEEEETTEEEEEETT
T ss_pred EEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-CCCCCCcceEEECCEEEEEECC
Confidence 999888999999976665 555543220 00111111 1134688999999999999999
Q ss_pred CCcEEEEcccCCC
Q psy6570 180 TNNILKINKFGNS 192 (713)
Q Consensus 180 ~~~i~~~~~~~~~ 192 (713)
.++|++++..+..
T Consensus 287 ~~~v~~v~~~~~~ 299 (352)
T 2ism_A 287 GQALLRLVLEGER 299 (352)
T ss_dssp TTEEEEEEEEEET
T ss_pred CCEEEEEEECCCC
Confidence 9999999876543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.5e-11 Score=123.27 Aligned_cols=193 Identities=13% Similarity=0.141 Sum_probs=135.4
Q ss_pred CcccCCceeEEEccCcccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEec-CCceEEEEEc---CCCCCcceE
Q psy6570 2 ASISSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTL-EGRKKRTLLN---TGLNEPYDI 77 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~-~G~~~~~l~~---~~~~~p~~i 77 (713)
++...+.|+++++++..+.+......|.+|++|+. ++||+++. ..+.|.++++ +|+....+.. ..+..|++|
T Consensus 45 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~d-g~l~v~~~---~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i 120 (296)
T 3e5z_A 45 SDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQ-GHLIACSH---GLRRLERQREPGGEWESIADSFEGKKLNSPNDV 120 (296)
T ss_dssp EEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTT-CCEEEEET---TTTEEEEECSTTCCEEEEECEETTEECCCCCCE
T ss_pred EeCCCCEEEEEECCCCeEEEECCCCCcceeeECCC-CcEEEEec---CCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCE
Confidence 45677889999988774444556677999999975 67999987 5689999998 6654433211 124678999
Q ss_pred EEcCCCCcEEEEccC----------------CCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEE
Q psy6570 78 ALEPLSGRMFWTELG----------------IKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIE 141 (713)
Q Consensus 78 avD~~~~~ly~td~~----------------~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~ 141 (713)
++|+ +|+||++|.. ....|++++.+|+. ..+...+..|++|+++++++.| |++...++|+
T Consensus 121 ~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~--~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~ 196 (296)
T 3e5z_A 121 CLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTL--SAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATH 196 (296)
T ss_dssp EECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCE--EEEECCCSSEEEEEECTTSCEE-EEETTTTEEE
T ss_pred EECC-CCCEEEECCccccccccccccccccCCCcEEEEECCCCCE--EEeecCCCCCccEEECCCCCEE-EEeCCCCeEE
Confidence 9997 7889998641 12379999888442 3334578889999999877777 9999999999
Q ss_pred EEeCC--CCc---eeEEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEE
Q psy6570 142 SINLN--GKD---RFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLI 209 (713)
Q Consensus 142 ~~~~~--g~~---~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v 209 (713)
+++++ |.. ..++ .. ....|.+|+++ +++||++. .+.|.++++. +.....+..... +..+.+
T Consensus 197 ~~~~~~~g~~~~~~~~~-~~--~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f 263 (296)
T 3e5z_A 197 RYCLNARGETEYQGVHF-TV--EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCF 263 (296)
T ss_dssp EEEECSSSCEEEEEEEE-CC--SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEE
T ss_pred EEEECCCCcCcCCCeEe-eC--CCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEE
Confidence 99985 332 2333 22 34578889987 66888888 6789999886 333333333222 444443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.9e-11 Score=123.69 Aligned_cols=157 Identities=16% Similarity=0.108 Sum_probs=117.9
Q ss_pred CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCC-CeEEEEecCC
Q psy6570 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIK-PRISGASIDG 104 (713)
Q Consensus 26 ~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~-~~I~~~~~dG 104 (713)
..|++|++|+ +++|||+|. ..++|++++++|+....+. .. ..|.+|++|+ ++.||+++.+.+ .+|++++...
T Consensus 32 ~~pegia~~~-~g~lyv~d~---~~~~I~~~d~~g~~~~~~~-~~-~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAP-DGTIFVTNH---EVGEIVSITPDGNQQIHAT-VE-GKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECT-TSCEEEEET---TTTEEEEECTTCCEEEEEE-CS-SEEEEEEECT-TSCEEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECC-CCCEEEEeC---CCCeEEEECCCCceEEEEe-CC-CCceeEEEcC-CCcEEEEeccCCcceEEEEcCCC
Confidence 7899999998 577999998 7889999999997554433 32 5799999996 567999997644 2588877544
Q ss_pred CCcEEEEe-CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEE-e-------cCCCCccceeeeeeCCeEEE
Q psy6570 105 KNKFNLVD-NNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVY-H-------TEDNGYKPYKLEVFEDNLYF 175 (713)
Q Consensus 105 ~~~~~l~~-~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~-~-------~~~~~~~p~~i~~~~~~ly~ 175 (713)
...+.++. .....|+|+++. ..+++|++|...++|++++.++...+++. . ....+..|.+|+.++++||+
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv 183 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYV 183 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEE
T ss_pred CeEEEEEeCCCccccCccccc-CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEE
Confidence 34444443 345678999986 56789999998899999998764322221 1 11235678899777889999
Q ss_pred EeCCCCcEEEEcccC
Q psy6570 176 STYRTNNILKINKFG 190 (713)
Q Consensus 176 td~~~~~i~~~~~~~ 190 (713)
++...++|++++..+
T Consensus 184 ~d~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 184 SNTEKMLLLRIPVDS 198 (306)
T ss_dssp EETTTTEEEEEEBCT
T ss_pred EeCCCCEEEEEEeCC
Confidence 999999999998764
|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.4e-13 Score=149.07 Aligned_cols=137 Identities=31% Similarity=0.756 Sum_probs=103.5
Q ss_pred CCCCCCCCcEEcCCCCCeeccCCCCCCCCCCcccCCCCCCCCCCCCCCC----CCCCCCcEEeecCCCceeeCC------
Q psy6570 509 DTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTP----NYCSNNGTCVLIEGKPSCKCL------ 578 (713)
Q Consensus 509 ~~~~C~~~g~C~~~~~~~~C~C~~g~~G~~C~~~~~~~~c~~~~~~C~~----~~C~~~~~C~~~~g~~~C~C~------ 578 (713)
...+|.++|+|. .+.|.|++||+|..|++..+...-......|.. .+|+++|+|+. .+|.|+
T Consensus 433 ~s~~Cs~~G~C~----~g~C~C~~Gy~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~----G~C~C~~~~~~~ 504 (687)
T 3k6s_B 433 DRSLCHGKGFLE----CGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC----GQCLCHTSDVPG 504 (687)
T ss_dssp CSSTGGGSEEES----SSSEEECSSEESTTSCEESSSCCCSGGGSTTSSSTTSCGGGSSEEEET----TEEEECCCCSTT
T ss_pred CCCCCCCCCEEe----CCEeEcCCCCcCCcccccCCcCCccccCCCCCCCCCCCcCCCCCEEeC----CEEEcCCCCCCC
Confidence 345788889997 368999999999999965432110000123543 35999999993 389999
Q ss_pred CCCcCCCCCcCCCCCCCC----CCCCC--CCeEecCCCCcceeecCCCcccCCCCc---CCCCCC----CCCCCCeecCC
Q psy6570 579 PPYSGKQCTEREDSPSCH----NYCDN--AGLCSYSKQGKPVCTCVNGWSGITCSE---RVSCAH----FCFNGGTCREQ 645 (713)
Q Consensus 579 ~G~~G~~C~~~~~~~~C~----~~C~~--~g~C~~~~~g~~~C~C~~G~~G~~C~~---~~~C~~----~C~~~~~C~~~ 645 (713)
+||+|..|+.. ...|. ..|.+ +|+|.. .+|.|++||+|..|+. ...|.. +|.++|+|..
T Consensus 505 ~G~~G~~Ce~~--~~~C~~~~~~~C~~~~~G~C~~-----g~C~C~~G~~G~~Cec~~~~~~C~~~~g~~Cs~~G~C~~- 576 (687)
T 3k6s_B 505 KLIYGQYCECD--TINCERYNGQVCGGPGRGLCFC-----GKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC- 576 (687)
T ss_dssp CCEESTTSCEE--SSCSCEETTEETSHHHHEEEET-----TEEEECTTCCSTTSCSCCSSCTTBCTTCSBTSSSCCBCS-
T ss_pred CCccccccccc--cccccCCCCcCcCCCCCCeEEC-----CEEEcCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcCCC-
Confidence 99999999842 35674 35988 899984 2699999999999983 245763 6888888876
Q ss_pred CCccCCCCCceeeCCCCcccCCCCc
Q psy6570 646 NYSLDPDLKPICICPRGYAGVRCQT 670 (713)
Q Consensus 646 ~~~~~~~~~~~C~C~~Gy~G~~C~~ 670 (713)
++|.|++||+|.+|+.
T Consensus 577 ---------g~C~C~~Gy~G~~Ce~ 592 (687)
T 3k6s_B 577 ---------NVCECHSGYQLPLCQE 592 (687)
T ss_dssp ---------SCBCCSTTCCTTTTCC
T ss_pred ---------CEEECCCCCcCCCCCC
Confidence 6899999999999997
|
| >4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.5e-13 Score=147.49 Aligned_cols=58 Identities=31% Similarity=0.773 Sum_probs=43.0
Q ss_pred CeecCCCCccCCCCCCccccCCCCCCcccCCCCccCCCC------CCCCCCCCcEEcCC----CCCeeccCCCCCCCCCC
Q psy6570 470 PKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKC------DTCTCLNGGTCIPN----SKNNVCKCPSQYTGRRC 539 (713)
Q Consensus 470 ~~C~C~~G~~g~~C~~~~C~~~~~~~~C~C~~G~~g~~C------~~~~C~~~g~C~~~----~~~~~C~C~~g~~G~~C 539 (713)
..|.|.++|.|..|+. |++||+|..| ..++|.++++|.+. ..+++|.|++||+|..|
T Consensus 407 ~~C~C~~g~~G~~C~~-------------C~~Gy~G~~c~~~~~C~~C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~C 473 (525)
T 4aqs_A 407 GQCRCKLHVEGERCDV-------------CKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRC 473 (525)
T ss_dssp SCCCBCTTEETTTTCE-------------ECTTEECCCTTSTTSSEECCCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTT
T ss_pred CccCCCCCCCCCcccC-------------CCCCCcCCCCCCCCCCccCCCCCCceecCCCcccCCCCEEECCCCCcCCCc
Confidence 4688888888888763 7888887544 45677766666543 23678999999999988
Q ss_pred c
Q psy6570 540 E 540 (713)
Q Consensus 540 ~ 540 (713)
+
T Consensus 474 e 474 (525)
T 4aqs_A 474 D 474 (525)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=8e-13 Score=145.17 Aligned_cols=113 Identities=25% Similarity=0.552 Sum_probs=92.1
Q ss_pred CCCCCCCCCCCCcEEeecCC-Ccee-eCCCCCcC--CCCCcCCCCCCC-CCC--CCCCC---eEecCCCCcceee-cCCC
Q psy6570 552 ANKCTPNYCSNNGTCVLIEG-KPSC-KCLPPYSG--KQCTEREDSPSC-HNY--CDNAG---LCSYSKQGKPVCT-CVNG 620 (713)
Q Consensus 552 ~~~C~~~~C~~~~~C~~~~g-~~~C-~C~~G~~G--~~C~~~~~~~~C-~~~--C~~~g---~C~~~~~g~~~C~-C~~G 620 (713)
+++|.+++|.++++|+++.+ +|+| .|++||+| ..|+++ ++| ..+ |.+++ +|++.. ++|+|. |++|
T Consensus 3 IDeC~~nPC~~gg~C~n~~~Gsy~C~~C~~GytGdg~~CeDi---DEC~~~p~~C~~gg~~~~CvNt~-gsY~C~~C~~G 78 (634)
T 1yo8_A 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDL---DECALVPDICFSTSKVPRCVNTQ-PGFHCLPCPPR 78 (634)
T ss_dssp -CGGGGCCSCTTCCEEECTTSCEEECCCCTTBCSCSSSCCBC---CTTTTSCCCSCCCSSSCCEEECS-SSEEECCCCTT
T ss_pred ccccCCCCCCCCCEEecCCCCCeECCcCCCccCCCCCCcccc---ccccCCCCcccCCccccceeecc-CceecccCCCC
Confidence 67899999999999999875 5999 99999998 789865 888 344 99988 999887 899999 9999
Q ss_pred cccCC---------------CCcCCCCC---CCCCCCCeecCCCCccCCCCCceeeCCCCccc--CCCCc
Q psy6570 621 WSGIT---------------CSERVSCA---HFCFNGGTCREQNYSLDPDLKPICICPRGYAG--VRCQT 670 (713)
Q Consensus 621 ~~G~~---------------C~~~~~C~---~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G--~~C~~ 670 (713)
|+|.. |+.+.+|. ++|.++++|++... ...++|+|.|++||+| ..|+.
T Consensus 79 y~G~~c~g~g~~~~~~dg~~C~dideC~~~~~pC~~~~~Cvnt~~--~~~GsY~C~C~~Gy~GdG~~Ce~ 146 (634)
T 1yo8_A 79 YRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGH--FSDPMYKCECQTGYAGDGLICGE 146 (634)
T ss_dssp EEECCCEESSSHHHHSCCCCEEECCTTTTTCCCCCTTEEEEECCT--TCSSSEEEEECTTEEESSSSEEE
T ss_pred cccCccccccccccccCCCcccccccccCCCcccccCcccccccc--ccccceeeeccCCccccCccccc
Confidence 99886 55677886 48999999987110 0126799999999998 68864
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.4e-11 Score=125.63 Aligned_cols=182 Identities=16% Similarity=0.174 Sum_probs=126.1
Q ss_pred CceeEEEccCcccEEe------cCCCCCceEEEecc---CCeEEEeecCCCCC----CeEEEEecCCc-----eEEEEEc
Q psy6570 7 GNVTRVKREMNLKTVL------SNLHDPRGVAVDWV---GKNLYWTDAGGRSS----NNIMVSTLEGR-----KKRTLLN 68 (713)
Q Consensus 7 ~~I~~~~~~~~~~~~~------~~~~~p~gla~D~~---~~~ly~td~~~~~~----~~I~~~~~~G~-----~~~~l~~ 68 (713)
++|++++.++. +++. .+...|.|||+++. ++.||+++...... ++|.++++++. ..++++.
T Consensus 49 g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~ 127 (354)
T 3a9g_A 49 GRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLID 127 (354)
T ss_dssp TEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEE
T ss_pred CEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEE
Confidence 78888876665 3332 34567999999987 78999998610012 78999998875 2333332
Q ss_pred ----CCCCCcceEEEcCCCCcEEEEccC------------CCCeEEEEecCCCC-------cEEEEeCCCCCCeeEEEeC
Q psy6570 69 ----TGLNEPYDIALEPLSGRMFWTELG------------IKPRISGASIDGKN-------KFNLVDNNIQWPTGITIDY 125 (713)
Q Consensus 69 ----~~~~~p~~iavD~~~~~ly~td~~------------~~~~I~~~~~dG~~-------~~~l~~~~~~~p~glavd~ 125 (713)
.....|.+|+++| +|+||++... ..++|+|++.||+. ...++...+..|.||++|+
T Consensus 128 ~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~ 206 (354)
T 3a9g_A 128 GIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHR 206 (354)
T ss_dssp EEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECT
T ss_pred cCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeC
Confidence 2345789999997 7799999632 12489999999972 2234455889999999998
Q ss_pred CCCeEEEEcCCCCc---EEEEeCCCCc---------------eeEEEecCCCCccceeeee--------eCCeEEEEeCC
Q psy6570 126 PSQRLYWADPKART---IESINLNGKD---------------RFVVYHTEDNGYKPYKLEV--------FEDNLYFSTYR 179 (713)
Q Consensus 126 ~~~~LY~~d~~~~~---I~~~~~~g~~---------------~~~~~~~~~~~~~p~~i~~--------~~~~ly~td~~ 179 (713)
.+++||++|...++ |.++.. |.+ ...+.........|.++++ +++.||++++.
T Consensus 207 ~~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~ 285 (354)
T 3a9g_A 207 ASGVMVATEHGPVGHDEVNIILK-GGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR 285 (354)
T ss_dssp TTCCEEEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT
T ss_pred CCCCEEEEecCCCCCcEEEEecC-CCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC
Confidence 88999999987654 555543 221 0111111011346888988 57899999999
Q ss_pred CCcEEEEcccCC
Q psy6570 180 TNNILKINKFGN 191 (713)
Q Consensus 180 ~~~i~~~~~~~~ 191 (713)
.++|++++..+.
T Consensus 286 ~~~v~~~~~~~~ 297 (354)
T 3a9g_A 286 GSMLAAVNFGDN 297 (354)
T ss_dssp TTEEEEEEECGG
T ss_pred CCEEEEEEECCC
Confidence 999999987643
|
| >4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.5e-13 Score=145.97 Aligned_cols=91 Identities=19% Similarity=0.422 Sum_probs=35.3
Q ss_pred cee-eCCCCCcCCCCCcCCCCCCC-CCCCCCCCeEecCC---CCcceeecCCCcccCCCCc-----------CCCCC-CC
Q psy6570 573 PSC-KCLPPYSGKQCTEREDSPSC-HNYCDNAGLCSYSK---QGKPVCTCVNGWSGITCSE-----------RVSCA-HF 635 (713)
Q Consensus 573 ~~C-~C~~G~~G~~C~~~~~~~~C-~~~C~~~g~C~~~~---~g~~~C~C~~G~~G~~C~~-----------~~~C~-~~ 635 (713)
..| .|.+||+|..|... ..| ...|.++++|.+.. ..+++|.|++||+|..|+. ...|. .+
T Consensus 418 ~~C~~C~~Gy~G~~c~~~---~~C~~C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~C~~G~~g~~~~~~~C~~C~ 494 (525)
T 4aqs_A 418 ERCDVCKEGFYDLSAEDP---YGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCD 494 (525)
T ss_dssp TTTCEECTTEECCCTTST---TSSEECCCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC-------------------
T ss_pred CcccCCCCCCcCCCCCCC---CCCccCCCCCCceecCCCcccCCCCEEECCCCCcCCCcccCCCCccCCCCCCCCCcCCC
Confidence 345 68889988887754 445 34565555554321 2356799999999999963 22343 35
Q ss_pred CCCCCeecCCCCccCCCCCceeeCCCCcccCCCCc
Q psy6570 636 CFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQT 670 (713)
Q Consensus 636 C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~ 670 (713)
|.+++.|... + ...+++|.|++||+|.+|++
T Consensus 495 C~~~gs~~~~--C--~~~tG~C~C~~G~~G~~Ceq 525 (525)
T 4aqs_A 495 CDLGGALNNS--C--SEDSGQCSCLPHMIGRQCNE 525 (525)
T ss_dssp -----------------------------------
T ss_pred CCCCCccCCc--c--CCCCCeeECCCCCcCCCCCC
Confidence 6666655431 1 12347899999999999974
|
| >1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-13 Score=116.78 Aligned_cols=100 Identities=22% Similarity=0.604 Sum_probs=79.4
Q ss_pred CCCCCCCCCCCCCcEEeec-CCCceeeCCCCCcCCCCCcCCCCCCCCCCCCCC---CeEecCCCCcceeecCCCcc---c
Q psy6570 551 LANKCTPNYCSNNGTCVLI-EGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNA---GLCSYSKQGKPVCTCVNGWS---G 623 (713)
Q Consensus 551 ~~~~C~~~~C~~~~~C~~~-~g~~~C~C~~G~~G~~C~~~~~~~~C~~~C~~~---g~C~~~~~g~~~C~C~~G~~---G 623 (713)
++++|.+++|.+ +|+++ .++|+|.|++||+|..+. .++|...|.++ +.|.+ . ++|.|.|++||+ |
T Consensus 3 dideC~~~pC~~--~C~~~~~g~y~C~C~~Gy~g~~~~----~~~C~~~C~~~~C~~~C~~-~-~~y~C~C~~Gy~~~~g 74 (118)
T 1dx5_I 3 PVDPCFRANCEY--QCQPLDQTSYLCVCAEGFAPIPHE----PHRCQMFCNQTACPADCDP-N-TQASCECPEGYILDDG 74 (118)
T ss_dssp CCCGGGGCCCSS--EEEECSSSCEEEECCTTEEEETTE----EEEEEECCCSSEEECEECT-T-STTCEECCTTEEEETT
T ss_pred ccccCCCCCCCC--CCCCCCCCCEEeECCCCccccCCC----CCccccccCCCCCCCcccC-C-CCeEeECCCCccCCCC
Confidence 368899899974 99999 899999999999998542 13443334333 68876 3 889999999999 8
Q ss_pred CCCCcCCCCC--CCCCCCCeecCCCCccCCCCCceeeCCCCcccC
Q psy6570 624 ITCSERVSCA--HFCFNGGTCREQNYSLDPDLKPICICPRGYAGV 666 (713)
Q Consensus 624 ~~C~~~~~C~--~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~ 666 (713)
..|+++++|. ++| +++|++ ..++|+|.|++||+|.
T Consensus 75 ~~C~dideC~~~~~C--~~~C~n------~~g~y~C~C~~G~~g~ 111 (118)
T 1dx5_I 75 FICTDIDECENGGFC--SGVCHN------LPGTFECICGPDSALA 111 (118)
T ss_dssp TEEEECCHHHHCSSC--SSEEEE------CSSSEEEEECSSSSCE
T ss_pred CccccccccCCCCCC--cCeEEe------CCCCEEEECCCCCccC
Confidence 8999888886 678 578876 4567999999999875
|
| >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A | Back alignment and structure |
|---|
Probab=99.31 E-value=8.1e-14 Score=128.83 Aligned_cols=127 Identities=24% Similarity=0.567 Sum_probs=92.0
Q ss_pred CCC-CCCCCCCcEEcCCCCCeeccCCCCCC----CCCCcccCCCCCCCCCCCC--CCCC--CC--CCCcEEeecCC----
Q psy6570 507 KCD-TCTCLNGGTCIPNSKNNVCKCPSQYT----GRRCECAVGDTSCASLANK--CTPN--YC--SNNGTCVLIEG---- 571 (713)
Q Consensus 507 ~C~-~~~C~~~g~C~~~~~~~~C~C~~g~~----G~~C~~~~~~~~c~~~~~~--C~~~--~C--~~~~~C~~~~g---- 571 (713)
+|. ..+|. +++|+++.++|+|.|++||+ |..|+ + +++ |... +| .++++|++..+
T Consensus 5 eC~~~~~C~-~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~-d---------~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~ 73 (162)
T 1uzk_A 5 ECLDPTTCI-SGNCVNTPGSYICDCPPDFELNPTRVGCV-D---------TRSGNCYLDIRPRGDNGDTACSNEIGVGVS 73 (162)
T ss_dssp GGGSTTSSB-TSEEEEETTEEEEECCTTCEECTTSSBEE-C---------CCCEEEEEEC----------CEEEEEEEEC
T ss_pred cCCCCCCCC-CCEeECCCCCEEEeCCCCCeECCCCCccc-C---------CCCCcccCCCcccCCCCCCcccCCcCCccc
Confidence 454 35786 68999999999999999998 77776 2 233 6532 23 34788998877
Q ss_pred CceeeCCCCCc-CCCCCcCCCCCCCCCCCCCCCeEecCCCCcceeecCC--CcccC----CCCcCCCCC---CCCCCCCe
Q psy6570 572 KPSCKCLPPYS-GKQCTEREDSPSCHNYCDNAGLCSYSKQGKPVCTCVN--GWSGI----TCSERVSCA---HFCFNGGT 641 (713)
Q Consensus 572 ~~~C~C~~G~~-G~~C~~~~~~~~C~~~C~~~g~C~~~~~g~~~C~C~~--G~~G~----~C~~~~~C~---~~C~~~~~ 641 (713)
+|+|.|++||. |..|+. |.....++|.|.|++ ||+|. .|+++++|. ++|.+ ++
T Consensus 74 ~~~C~C~~G~~~~~~C~~----------------C~~~~~~~y~C~C~~g~G~~~~~~~~~c~dideC~~~~~~C~~-g~ 136 (162)
T 1uzk_A 74 KASCCCSLGKAWGTPCEM----------------CPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQG-GK 136 (162)
T ss_dssp HHHHHTTTCCEETTTTEE----------------CCCTTSHHHHHHCTTCTTEEECTTTCCEEECCHHHHCGGGGBT-SE
T ss_pred CceeeCCCCCCcCCCccc----------------CCCCCCCCceeECCCCCCcccCCCCCccCccccccCCCCCcCC-CE
Confidence 79999999998 665541 322334789999998 99975 578888896 45875 68
Q ss_pred ecCCCCccCCCCCceeeCCCCcccCC
Q psy6570 642 CREQNYSLDPDLKPICICPRGYAGVR 667 (713)
Q Consensus 642 C~~~~~~~~~~~~~~C~C~~Gy~G~~ 667 (713)
|++ ..++|+|.|++||+|..
T Consensus 137 C~n------~~gsy~C~C~~Gy~g~~ 156 (162)
T 1uzk_A 137 CIN------TFGSFQCRCPTGYYLNE 156 (162)
T ss_dssp EEE------CSSCEEEECCTTCCBCT
T ss_pred eEc------CCCCEEeeCCCCccCCC
Confidence 886 45679999999999875
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.30 E-value=9e-11 Score=123.30 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=114.1
Q ss_pred cccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEE----EcCCCCCcceEEEcCC---CCcEEEE
Q psy6570 17 NLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTL----LNTGLNEPYDIALEPL---SGRMFWT 89 (713)
Q Consensus 17 ~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l----~~~~~~~p~~iavD~~---~~~ly~t 89 (713)
..++++.++..|++|++++. ++||+++. . ++|.+++ +|+...+. ...++..|.+|+++|. +++||++
T Consensus 22 ~~~~va~~l~~P~~ia~~pd-G~l~V~e~---~-g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~ 95 (352)
T 2ism_A 22 RVEEVVGGLEVPWALAFLPD-GGMLIAER---P-GRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAY 95 (352)
T ss_dssp CEEEEECCCSCEEEEEECTT-SCEEEEET---T-TEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred EEEEEECCCCCceEEEEcCC-CeEEEEeC---C-CeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEE
Confidence 34667889999999999976 57999997 3 8999998 77543222 1234678999999987 7899999
Q ss_pred ccCC----CCeEEEEecCCCC---cEEEEe------CCCCCCeeEEEeCCCCeEEEEcC-------------CCCcEEEE
Q psy6570 90 ELGI----KPRISGASIDGKN---KFNLVD------NNIQWPTGITIDYPSQRLYWADP-------------KARTIESI 143 (713)
Q Consensus 90 d~~~----~~~I~~~~~dG~~---~~~l~~------~~~~~p~glavd~~~~~LY~~d~-------------~~~~I~~~ 143 (713)
+... ..+|.|+++++.. .++++. ...+.|.+|++++ +++||+++. ..++|+++
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri 174 (352)
T 2ism_A 96 RTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRL 174 (352)
T ss_dssp EEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEE
T ss_pred EecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEE
Confidence 8753 1389999988642 233432 2356789999997 459999963 23689999
Q ss_pred eCCC-------------CceeEEEecCCCCccceeeeee--CCeEEEEeCCCCc
Q psy6570 144 NLNG-------------KDRFVVYHTEDNGYKPYKLEVF--EDNLYFSTYRTNN 182 (713)
Q Consensus 144 ~~~g-------------~~~~~~~~~~~~~~~p~~i~~~--~~~ly~td~~~~~ 182 (713)
+.+| ...+++... +.+|.+|+++ .+.||+++...+.
T Consensus 175 ~~dG~~p~~npf~~~~~~~~~i~a~G---~rnp~g~a~d~~~g~l~v~d~g~~~ 225 (352)
T 2ism_A 175 TPEGEPAPGNPFLGRRGARPEVYSLG---HRNPQGLAWHPKTGELFSSEHGPSG 225 (352)
T ss_dssp CTTSSBCTTCTTTTCTTSCTTEEEEC---CSEECCCEECTTTCCEEEEEECC--
T ss_pred cCCCCCCCCCcccCCCCCCccEEEEc---CCCcccEEEECCCCCEEEEEcCCCC
Confidence 9998 234444443 6789999988 5789999987665
|
| >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-13 Score=127.38 Aligned_cols=127 Identities=26% Similarity=0.585 Sum_probs=82.2
Q ss_pred cCC-CCCCCCCcEeccCCCCccccCCCCCc----CCCCc-cCC--CCCC---C---CCCeeecCCC----CCeecCCCCc
Q psy6570 417 QCL-NLKCQNGGVCVNKTTGLECDCPKFYY----GKNCQ-YSQ--CKNY---C---VNGECSITDS----GPKCMCSPGY 478 (713)
Q Consensus 417 ~C~-~~~C~~~~~C~~~~~~~~C~C~~G~~----g~~C~-~~~--C~~~---~---~~~~C~~~~~----~~~C~C~~G~ 478 (713)
+|. +.+|. +++|+++.++|+|.|++||+ |..|+ +++ |... + .++.|.+..+ +|.|.|++||
T Consensus 5 eC~~~~~C~-~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~C~~G~ 83 (162)
T 1uzk_A 5 ECLDPTTCI-SGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGK 83 (162)
T ss_dssp GGGSTTSSB-TSEEEEETTEEEEECCTTCEECTTSSBEECCCCEEEEEEC----------CEEEEEEEECHHHHHTTTCC
T ss_pred cCCCCCCCC-CCEeECCCCCEEEeCCCCCeECCCCCcccCCCCCcccCCCcccCCCCCCcccCCcCCcccCceeeCCCCC
Confidence 565 36786 68999999999999999998 77786 333 5321 1 2445555444 3455555554
Q ss_pred cCCCCCCccccCCCCCCcccCCCCccCCCCCCCCCCCCcEEcCCCCCeeccCCC--CCCCCC---CcccCCCCCCCCCCC
Q psy6570 479 SGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPS--QYTGRR---CECAVGDTSCASLAN 553 (713)
Q Consensus 479 ~g~~C~~~~C~~~~~~~~C~C~~G~~g~~C~~~~C~~~g~C~~~~~~~~C~C~~--g~~G~~---C~~~~~~~~c~~~~~ 553 (713)
.. |..|+. |.. +..++|+|.|++ ||+|.. +..+ ++
T Consensus 84 ~~------------------------~~~C~~--C~~-----~~~~~y~C~C~~g~G~~~~~~~~~c~d---------id 123 (162)
T 1uzk_A 84 AW------------------------GTPCEM--CPA-----VNTSEYKILCPGGEGFRPNPITVILED---------ID 123 (162)
T ss_dssp EE------------------------TTTTEE--CCC-----TTSHHHHHHCTTCTTEEECTTTCCEEE---------CC
T ss_pred Cc------------------------CCCccc--CCC-----CCCCCceeECCCCCCcccCCCCCccCc---------cc
Confidence 40 333331 211 134578899987 888752 2122 67
Q ss_pred CCCC--CCCCCCcEEeecCCCceeeCCCCCcCCC
Q psy6570 554 KCTP--NYCSNNGTCVLIEGKPSCKCLPPYSGKQ 585 (713)
Q Consensus 554 ~C~~--~~C~~~~~C~~~~g~~~C~C~~G~~G~~ 585 (713)
+|.. .+|.+ ++|+++.|+|+|.|++||+|..
T Consensus 124 eC~~~~~~C~~-g~C~n~~gsy~C~C~~Gy~g~~ 156 (162)
T 1uzk_A 124 ECQELPGLCQG-GKCINTFGSFQCRCPTGYYLNE 156 (162)
T ss_dssp HHHHCGGGGBT-SEEEECSSCEEEECCTTCCBCT
T ss_pred cccCCCCCcCC-CEeEcCCCCEEeeCCCCccCCC
Confidence 8874 46974 7999999999999999999864
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.5e-11 Score=125.54 Aligned_cols=159 Identities=16% Similarity=0.160 Sum_probs=118.5
Q ss_pred ccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEE-----cCCCCCcceEEEcCC---CCcEEEE
Q psy6570 18 LKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLL-----NTGLNEPYDIALEPL---SGRMFWT 89 (713)
Q Consensus 18 ~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~-----~~~~~~p~~iavD~~---~~~ly~t 89 (713)
.++++.++..|++|++++. ++||+++. . ++|.+++.+|+ +.+. ..+...|.+|+++|. +++||++
T Consensus 21 ~~~va~~l~~P~~ia~~pd-G~l~V~e~---~-g~I~~~d~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~ 93 (354)
T 3a9g_A 21 ISEVASDLEVPWSIAPLGG-GRYLVTER---P-GRLVLISPSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLY 93 (354)
T ss_dssp EEEEECSCSCEEEEEEEET-TEEEEEET---T-TEEEEECSSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred EEEEeCCCCCCeEEEEcCC-CeEEEEeC---C-CEEEEEeCCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEE
Confidence 4566888999999999975 68999997 3 89999988886 3332 234567999999987 7999999
Q ss_pred ccC--CC----CeEEEEecCCC-----CcEEEEe----CCCCCCeeEEEeCCCCeEEEEcC-------------CCCcEE
Q psy6570 90 ELG--IK----PRISGASIDGK-----NKFNLVD----NNIQWPTGITIDYPSQRLYWADP-------------KARTIE 141 (713)
Q Consensus 90 d~~--~~----~~I~~~~~dG~-----~~~~l~~----~~~~~p~glavd~~~~~LY~~d~-------------~~~~I~ 141 (713)
+.. .. .+|.|+++++. ..++++. ...+.|.+|+|++ +++||++.. ..++|+
T Consensus 94 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ 172 (354)
T 3a9g_A 94 ASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKIL 172 (354)
T ss_dssp EEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEE
T ss_pred EeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEE
Confidence 863 11 38999998875 1333432 2356789999997 568999963 235899
Q ss_pred EEeCCCC--------ceeEEEecCCCCccceeeeee--CCeEEEEeCCCCc---EEEEc
Q psy6570 142 SINLNGK--------DRFVVYHTEDNGYKPYKLEVF--EDNLYFSTYRTNN---ILKIN 187 (713)
Q Consensus 142 ~~~~~g~--------~~~~~~~~~~~~~~p~~i~~~--~~~ly~td~~~~~---i~~~~ 187 (713)
|++.+|+ ..+++... +.+|.+|+++ .+.||+++...+. |.++.
T Consensus 173 ri~~dG~~p~~npf~~~~i~a~G---~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~ 228 (354)
T 3a9g_A 173 RVDEEGRPPADNPFPNSPIWSYG---HRNPQGIDWHRASGVMVATEHGPVGHDEVNIIL 228 (354)
T ss_dssp EECTTSCCCTTSSSTTCCEEEEC---CSCCCEEEECTTTCCEEEEECCSSSCCEEEEEC
T ss_pred EEcCCCCCCCCCCCCCCcEEEEc---cCCcceEEEeCCCCCEEEEecCCCCCcEEEEec
Confidence 9999997 44555443 7789999998 4789999987654 44444
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.8e-11 Score=124.54 Aligned_cols=181 Identities=11% Similarity=0.089 Sum_probs=122.5
Q ss_pred CCCCCceEEEeccCCeEEEeecCC--CCCCeEEEEecC-CceEEEEEcC-C----CCCcceEEEcCCCCcEEEEcc---C
Q psy6570 24 NLHDPRGVAVDWVGKNLYWTDAGG--RSSNNIMVSTLE-GRKKRTLLNT-G----LNEPYDIALEPLSGRMFWTEL---G 92 (713)
Q Consensus 24 ~~~~p~gla~D~~~~~ly~td~~~--~~~~~I~~~~~~-G~~~~~l~~~-~----~~~p~~iavD~~~~~ly~td~---~ 92 (713)
.+..|.+|++|+. ++|||+|.+. ....+|.+++++ |+..+.+... . ...|++|++|+.++++|++|. .
T Consensus 65 ~~~~p~gv~~d~~-g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 65 TFDTVLGIKSDGN-GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCSCEEEEEECSS-SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred ceeEeeEEEEcCC-CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 4678999999976 7899999720 004789999987 4434444321 1 246899999988899999998 5
Q ss_pred CCCeEEEEecCCCCcEEEEeC--------------C---------------CCCCeeEEEeCCCCeEEEEcCCCCcEEEE
Q psy6570 93 IKPRISGASIDGKNKFNLVDN--------------N---------------IQWPTGITIDYPSQRLYWADPKARTIESI 143 (713)
Q Consensus 93 ~~~~I~~~~~dG~~~~~l~~~--------------~---------------~~~p~glavd~~~~~LY~~d~~~~~I~~~ 143 (713)
.. .|.+++++......++.. . ...|+||+|++++++||+++....+|+++
T Consensus 144 ~~-~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~ 222 (343)
T 2qe8_A 144 KA-ALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRI 222 (343)
T ss_dssp GC-EEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred CC-eEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEE
Confidence 55 888888864333222211 0 12479999999888999999988899999
Q ss_pred eCC----CC--ce------eEEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceeeec-cccccccEEE
Q psy6570 144 NLN----GK--DR------FVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLAN-NLNRASDVLI 209 (713)
Q Consensus 144 ~~~----g~--~~------~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~i~v 209 (713)
+.+ +. .. ..+. . ...|.+|+++ +++||++++..++|.+++...+....+... .+..|.++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g-~---~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~ 298 (343)
T 2qe8_A 223 KSADLSNLQLTDAELGSKIERYS-E---KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNF 298 (343)
T ss_dssp EHHHHTCTTCCHHHHHTTCEEEE-E---CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEE
T ss_pred EHHHhcCCCCChhhhhcceEecc-c---CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEE
Confidence 853 21 11 1111 1 2368888887 679999999999999999722322222222 2455666665
Q ss_pred E
Q psy6570 210 L 210 (713)
Q Consensus 210 ~ 210 (713)
.
T Consensus 299 ~ 299 (343)
T 2qe8_A 299 G 299 (343)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.3e-10 Score=117.08 Aligned_cols=195 Identities=10% Similarity=0.055 Sum_probs=132.4
Q ss_pred cccCCceeEEEccCccc-EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCC-----CCCcce
Q psy6570 3 SISSGNVTRVKREMNLK-TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG-----LNEPYD 76 (713)
Q Consensus 3 d~~~~~I~~~~~~~~~~-~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~-----~~~p~~ 76 (713)
...++.|..+++.+.+. ..+.....|.+|++++. ++||+++. ..+.|.++++........+..+ ...|.+
T Consensus 60 ~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~-g~lyv~~~---~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~ 135 (328)
T 3dsm_A 60 VNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSD-EKAYVTQI---WDYRIFIINPKTYEITGYIECPDMDMESGSTEQ 135 (328)
T ss_dssp EGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEET-TEEEEEEB---SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCC
T ss_pred EcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCC-CeEEEEEC---CCCeEEEEECCCCeEEEEEEcCCccccCCCcce
Confidence 34467888888886442 22466789999999866 59999996 5789999998865544333332 128999
Q ss_pred EEEcCCCCcEEEEccC-CCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCC----------CcEEEEeC
Q psy6570 77 IALEPLSGRMFWTELG-IKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKA----------RTIESINL 145 (713)
Q Consensus 77 iavD~~~~~ly~td~~-~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~----------~~I~~~~~ 145 (713)
|+++ +++||+++++ .+ .|.++++........+.. ...|.+|++|+ .++||++.... ++|++++.
T Consensus 136 i~~~--~~~lyv~~~~~~~-~v~viD~~t~~~~~~i~~-g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~ 210 (328)
T 3dsm_A 136 MVQY--GKYVYVNCWSYQN-RILKIDTETDKVVDELTI-GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDA 210 (328)
T ss_dssp EEEE--TTEEEEEECTTCC-EEEEEETTTTEEEEEEEC-SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEET
T ss_pred EEEE--CCEEEEEcCCCCC-EEEEEECCCCeEEEEEEc-CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEEC
Confidence 9994 7899999985 55 899999875443333332 35799999996 57899998764 78999998
Q ss_pred CCCceeEEEecCCCCccceeeeee--CCeEEEEeCCCCcEEEEcccCCCcce--eeeccccccccEEEE
Q psy6570 146 NGKDRFVVYHTEDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKFGNSDFN--VLANNLNRASDVLIL 210 (713)
Q Consensus 146 ~g~~~~~~~~~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~i~v~ 210 (713)
............. ...|.+|++. +++||+++. .|++++..++.... ++......|.+|++.
T Consensus 211 ~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vd 275 (328)
T 3dsm_A 211 ETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPVRPFLEFRDTKYYGLTVN 275 (328)
T ss_dssp TTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCSSCSBCCCSSCEEEEEEC
T ss_pred CCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc---EEEEEECCCCceeeeeeecCCCCceEEEEEc
Confidence 7544332222211 2368888876 678999875 89999876554321 111113445555543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-10 Score=120.01 Aligned_cols=199 Identities=16% Similarity=0.198 Sum_probs=135.4
Q ss_pred cccCCceeEEEccCcc-cEEec-----CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEE-EcC----CC
Q psy6570 3 SISSGNVTRVKREMNL-KTVLS-----NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTL-LNT----GL 71 (713)
Q Consensus 3 d~~~~~I~~~~~~~~~-~~~~~-----~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l-~~~----~~ 71 (713)
+...+.|+++++.+.. ..+.. ....|.+|++|+.+++||+++. .+.|.+++++|+.. .+ ... ..
T Consensus 42 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~----~~~l~~~d~~g~~~-~~~~~~~~~~~~ 116 (314)
T 1pjx_A 42 GKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM----RLGLLVVQTDGTFE-EIAKKDSEGRRM 116 (314)
T ss_dssp TEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET----TTEEEEEETTSCEE-ECCSBCTTSCBC
T ss_pred CCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC----CCCEEEEeCCCCEE-EEEeccCCCccc
Confidence 4566788888865433 33322 3367999999976589999986 34899999985543 33 221 13
Q ss_pred CCcceEEEcCCCCcEEEEccCC--------------CCeEEEEecCCCCcEEEEeCCCCCCeeEEEe----CCCCeEEEE
Q psy6570 72 NEPYDIALEPLSGRMFWTELGI--------------KPRISGASIDGKNKFNLVDNNIQWPTGITID----YPSQRLYWA 133 (713)
Q Consensus 72 ~~p~~iavD~~~~~ly~td~~~--------------~~~I~~~~~dG~~~~~l~~~~~~~p~glavd----~~~~~LY~~ 133 (713)
..|.+|++|+ ++.||+++... ...|++++.+|+.. .+. ..+..|++|+++ +++++|||+
T Consensus 117 ~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~-~~~-~~~~~~~~i~~~~~~d~dg~~l~v~ 193 (314)
T 1pjx_A 117 QGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMI-QVD-TAFQFPNGIAVRHMNDGRPYQLIVA 193 (314)
T ss_dssp BCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEE-EEE-EEESSEEEEEEEECTTSCEEEEEEE
T ss_pred cCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCCCCEE-Eec-cCCCCcceEEEecccCCCCCEEEEE
Confidence 5699999997 67899998654 13799998885433 332 345679999999 887799999
Q ss_pred cCCCCcEEEEeCC--CCc--eeEEEecCCCC-ccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccE
Q psy6570 134 DPKARTIESINLN--GKD--RFVVYHTEDNG-YKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDV 207 (713)
Q Consensus 134 d~~~~~I~~~~~~--g~~--~~~~~~~~~~~-~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i 207 (713)
+...++|++++++ |.. ...+....... ..|.+|+++ +++||+++...+.|.++++.++.....+......+.++
T Consensus 194 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i 273 (314)
T 1pjx_A 194 ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNL 273 (314)
T ss_dssp ETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEE
T ss_pred ECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeE
Confidence 9988999999875 321 12232222112 568888887 57899998888899999987444444443333445555
Q ss_pred EE
Q psy6570 208 LI 209 (713)
Q Consensus 208 ~v 209 (713)
.+
T Consensus 274 ~~ 275 (314)
T 1pjx_A 274 HF 275 (314)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A | Back alignment and structure |
|---|
Probab=99.25 E-value=5.9e-12 Score=103.23 Aligned_cols=82 Identities=20% Similarity=0.469 Sum_probs=62.1
Q ss_pred CcccCCCCccCCCCCCCCCCCCcEEcCCCCCeeccCCCCCCCCCCc-ccCCCCCCCCCCCCCCCCCCCCCcEEeecC--C
Q psy6570 495 PKCMCSPGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE-CAVGDTSCASLANKCTPNYCSNNGTCVLIE--G 571 (713)
Q Consensus 495 ~~C~C~~G~~g~~C~~~~C~~~g~C~~~~~~~~C~C~~g~~G~~C~-~~~~~~~c~~~~~~C~~~~C~~~~~C~~~~--g 571 (713)
|.|.|.+||+|..|+...|.. ..|.+..+.|+|.|++||+ .|+ .+ +++|.+++|.++|+|++.. +
T Consensus 2 y~C~C~~g~~g~~c~~~~c~~-~pC~n~~~~y~C~C~~G~~--~C~~~~---------~~~C~~~pC~ngg~C~~~~~~~ 69 (91)
T 1tpg_A 2 YQVICRDEKTQMIYQQHQSWL-RPVLRSNRVEYCWCNSGRA--QCHSVP---------VKSCSEPRCFNGGTCQQALYFS 69 (91)
T ss_dssp CCCCCBCSSSCCBCCSSCEEE-EECSSSSCEEEEECSSSCC--BCCEEC---------EEECSSCCSCTTCEEEEESSSS
T ss_pred eeeECCCCCcCCeECCCcccC-CccccCCCCcEeECCCCCc--ccccCc---------CCcccCCCCCCCCEeecCCCCC
Confidence 455555555555554434422 2466667789999999998 776 23 5689999999999999987 8
Q ss_pred CceeeCCCCCcCCCCCc
Q psy6570 572 KPSCKCLPPYSGKQCTE 588 (713)
Q Consensus 572 ~~~C~C~~G~~G~~C~~ 588 (713)
+|+|.|++||+|..|+.
T Consensus 70 ~~~C~C~~G~~G~~Ce~ 86 (91)
T 1tpg_A 70 DFVCQCPEGFAGKSCEI 86 (91)
T ss_dssp CEEEECCTTCBSSSCCB
T ss_pred CeEeECCCCCcCCcCCc
Confidence 99999999999999974
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=4.9e-10 Score=116.50 Aligned_cols=198 Identities=13% Similarity=0.084 Sum_probs=132.8
Q ss_pred CcccCCceeEEEccCcccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCC----CCCcceE
Q psy6570 2 ASISSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG----LNEPYDI 77 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~----~~~p~~i 77 (713)
+++..+.|+++++++.....+..-..|.+|++++. +++|++.. ..|.++++++...+.+.... ...|+++
T Consensus 66 ~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~d-g~l~v~~~-----~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i 139 (326)
T 2ghs_A 66 FNILERELHELHLASGRKTVHALPFMGSALAKISD-SKQLIASD-----DGLFLRDTATGVLTLHAELESDLPGNRSNDG 139 (326)
T ss_dssp EEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEET-TEEEEEET-----TEEEEEETTTCCEEEEECSSTTCTTEEEEEE
T ss_pred EECCCCEEEEEECCCCcEEEEECCCcceEEEEeCC-CeEEEEEC-----CCEEEEECCCCcEEEEeeCCCCCCCCCCCCE
Confidence 45667889999988754333333457899999965 67777654 35999998655555444321 2468899
Q ss_pred EEcCCCCcEEEEccCC-----CCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCC---C-C
Q psy6570 78 ALEPLSGRMFWTELGI-----KPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLN---G-K 148 (713)
Q Consensus 78 avD~~~~~ly~td~~~-----~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~---g-~ 148 (713)
++|+ +|+||+++.+. ...|++++ +|+.+ .+ ...+..|++|++++++++|||++...++|++++++ | .
T Consensus 140 ~~d~-~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~-~~-~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~ 215 (326)
T 2ghs_A 140 RMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKVT-KL-FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLP 215 (326)
T ss_dssp EECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEEE-EE-EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCB
T ss_pred EECC-CCCEEEEeCCCcCCCCceEEEEEe-CCcEE-Ee-eCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCc
Confidence 9997 66788887531 24799988 65432 22 23456799999999888999999988999999985 4 2
Q ss_pred --ceeEEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEE
Q psy6570 149 --DRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLIL 210 (713)
Q Consensus 149 --~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~ 210 (713)
.++++.........|.++.++ +++||++.+..+.|.++++. +.....+......+..+++.
T Consensus 216 ~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 216 TGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp SSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEE
T ss_pred ccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEECCCCCcEEEEEe
Confidence 223443322223568889887 56899998888899999874 43333333333334444443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-10 Score=120.71 Aligned_cols=176 Identities=15% Similarity=0.106 Sum_probs=120.2
Q ss_pred cCCceeEEEccCc---ccEE-ecC------CCCCceEEEecc---CCeEEEeecCCCCCCe--EEEEecCCceEEEEEc-
Q psy6570 5 SSGNVTRVKREMN---LKTV-LSN------LHDPRGVAVDWV---GKNLYWTDAGGRSSNN--IMVSTLEGRKKRTLLN- 68 (713)
Q Consensus 5 ~~~~I~~~~~~~~---~~~~-~~~------~~~p~gla~D~~---~~~ly~td~~~~~~~~--I~~~~~~G~~~~~l~~- 68 (713)
..|+|++++++.. .+.+ +.+ .-+|.||.+... +.+||+++... ...+ |++++.+++....+..
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~-~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPG-SSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECST-TCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCC-CCCeEEEEEEECCCCEEEEEecc
Confidence 5789999998742 2222 333 248999999652 33799999842 1334 5566666655443322
Q ss_pred --CCCCCcceEEEcCCCCcEEEEccC----------------CCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeE
Q psy6570 69 --TGLNEPYDIALEPLSGRMFWTELG----------------IKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRL 130 (713)
Q Consensus 69 --~~~~~p~~iavD~~~~~ly~td~~----------------~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~L 130 (713)
..+..|+++++|+ .|.+|+++.. ..++|++++.+ ..+++ ..++..|+||++++++++|
T Consensus 160 ~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~-~~~l~~pNGia~spDg~~l 235 (355)
T 3sre_A 160 RHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVV-AEGFDFANGINISPDGKYV 235 (355)
T ss_dssp CCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEE-EEEESSEEEEEECTTSSEE
T ss_pred ccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEe-ecCCcccCcceECCCCCEE
Confidence 3478999999996 6788777541 23478888763 33333 4578899999999999999
Q ss_pred EEEcCCCCcEEEEeCCCC----ceeEEEecCCCCccceeeeeeC--CeEEEEe-CCCCcEEEEccc
Q psy6570 131 YWADPKARTIESINLNGK----DRFVVYHTEDNGYKPYKLEVFE--DNLYFST-YRTNNILKINKF 189 (713)
Q Consensus 131 Y~~d~~~~~I~~~~~~g~----~~~~~~~~~~~~~~p~~i~~~~--~~ly~td-~~~~~i~~~~~~ 189 (713)
||+|+..++|++++++.. .++++ .. ...|.+++++. ++||++. +...+|.++++.
T Consensus 236 Yvadt~~~~I~~~~~~~~g~l~~~~~~-~~---~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 236 YIAELLAHKIHVYEKHANWTLTPLRVL-SF---DTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEE-EC---SSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred EEEeCCCCeEEEEEECCCCcEecCEEE-eC---CCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 999999999999998642 22233 22 45799999984 7888865 565566666544
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.24 E-value=4.9e-10 Score=116.60 Aligned_cols=182 Identities=18% Similarity=0.247 Sum_probs=129.2
Q ss_pred CcccCCceeEEEccCcc-cEEe-cCCCCCceEEEeccCCeEEEeecCCCCC----CeEEEEecCCceEEEEEc--CCCCC
Q psy6570 2 ASISSGNVTRVKREMNL-KTVL-SNLHDPRGVAVDWVGKNLYWTDAGGRSS----NNIMVSTLEGRKKRTLLN--TGLNE 73 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~-~~~~-~~~~~p~gla~D~~~~~ly~td~~~~~~----~~I~~~~~~G~~~~~l~~--~~~~~ 73 (713)
++...+.|+++++++.. +.+. .....|.+|++|+. ++||++.. .. ..|.++++++...+.++. .....
T Consensus 61 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~d-g~l~v~~~---~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 136 (333)
T 2dg1_A 61 LDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKD-GRLFVCYL---GDFKSTGGIFAATENGDNLQDIIEDLSTAYC 136 (333)
T ss_dssp EETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTT-SCEEEEEC---TTSSSCCEEEEECTTSCSCEEEECSSSSCCC
T ss_pred EECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCC-CcEEEEeC---CCCCCCceEEEEeCCCCEEEEEEccCccCCc
Confidence 34556778888877643 2222 34567999999975 67888876 33 689999998876654443 22357
Q ss_pred cceEEEcCCCCcEEEEccCC-----CCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCC--
Q psy6570 74 PYDIALEPLSGRMFWTELGI-----KPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLN-- 146 (713)
Q Consensus 74 p~~iavD~~~~~ly~td~~~-----~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~-- 146 (713)
|.+|++|+ ++.||+++... ...|++++.++...+.+.. .+..|++|++++++++|||++...++|++++++
T Consensus 137 ~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~ 214 (333)
T 2dg1_A 137 IDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALSTDEKVLWVTETTANRLHRIALEDD 214 (333)
T ss_dssp EEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred ccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEeec-CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC
Confidence 99999997 67899988642 2379999988755555443 456799999998878899999888899999984
Q ss_pred CCceeEE----EecCCCCccceeeeee-CCeEEEEeCCCCcEEEEccc
Q psy6570 147 GKDRFVV----YHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 147 g~~~~~~----~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~ 189 (713)
|.....+ .........|.+|+++ +++||+++...+.|+++++.
T Consensus 215 g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 215 GVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp SSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred CcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 4433221 1111112468888887 56899998888899999874
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.22 E-value=8.3e-10 Score=112.86 Aligned_cols=160 Identities=14% Similarity=0.197 Sum_probs=120.0
Q ss_pred cccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCe
Q psy6570 17 NLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPR 96 (713)
Q Consensus 17 ~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~ 96 (713)
..+++...+..|+++++|+.++.|||++. ..+.|.++++++. .+.+. .....|.+|++|+ ++.||+++.+.. +
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~---~~~~i~~~~~~~~-~~~~~-~~~~~~~~l~~~~-dg~l~v~~~~~~-~ 91 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDV---RQNRTWAWSDDGQ-LSPEM-HPSHHQNGHCLNK-QGHLIACSHGLR-R 91 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEG---GGTEEEEEETTSC-EEEEE-SSCSSEEEEEECT-TCCEEEEETTTT-E
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeC---CCCEEEEEECCCC-eEEEE-CCCCCcceeeECC-CCcEEEEecCCC-e
Confidence 34566778889999999998878999998 7889999999988 54444 3457899999997 678999987666 8
Q ss_pred EEEEec-CCCCcEEEEe----CCCCCCeeEEEeCCCCeEEEEcC-----------------CCCcEEEEeCCCCceeEEE
Q psy6570 97 ISGASI-DGKNKFNLVD----NNIQWPTGITIDYPSQRLYWADP-----------------KARTIESINLNGKDRFVVY 154 (713)
Q Consensus 97 I~~~~~-dG~~~~~l~~----~~~~~p~glavd~~~~~LY~~d~-----------------~~~~I~~~~~~g~~~~~~~ 154 (713)
|.++++ +|+ .+.++. ..+..|++|++|+ .++||++|. ..+.|++++.+|.. ..+.
T Consensus 92 i~~~d~~~g~-~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~-~~~~ 168 (296)
T 3e5z_A 92 LERQREPGGE-WESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTL-SAPI 168 (296)
T ss_dssp EEEECSTTCC-EEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCE-EEEE
T ss_pred EEEEcCCCCc-EEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCCCCE-EEee
Confidence 999998 554 333432 1245789999996 678999864 24589999988543 3333
Q ss_pred ecCCCCccceeeeee-CCeEEEEeCCCCcEEEEccc
Q psy6570 155 HTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 155 ~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~ 189 (713)
.. +..|.+|++. +++++|++...+.|++++..
T Consensus 169 ~~---~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~ 201 (296)
T 3e5z_A 169 RD---RVKPNGLAFLPSGNLLVSDTGDNATHRYCLN 201 (296)
T ss_dssp CC---CSSEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred cC---CCCCccEEECCCCCEEEEeCCCCeEEEEEEC
Confidence 22 5577888876 34444999988999998875
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-09 Score=106.50 Aligned_cols=181 Identities=12% Similarity=0.142 Sum_probs=125.3
Q ss_pred cCCceeEEEccCcccE-E-ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceE-E--EEEcCCC-CCc----
Q psy6570 5 SSGNVTRVKREMNLKT-V-LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKK-R--TLLNTGL-NEP---- 74 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~~-~-~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~-~--~l~~~~~-~~p---- 74 (713)
..++|+++++.+.... + +.+...++||+++. .+.+|+++. ..++|+++.++.... . ......+ ..|
T Consensus 47 ~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E---~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g 122 (255)
T 3qqz_A 47 KPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIG-DNQFVISDE---RDYAIYVISLTPNSEVKILKKIKIPLQESPTNCG 122 (255)
T ss_dssp TTEEEEEEETTCCEEEEEECSSCSSEEEEEECS-TTEEEEEET---TTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSC
T ss_pred CCCeEEEEeCCCCEEEEEecCCCCChHHeEEeC-CCEEEEEEC---CCCcEEEEEcCCCCeeeeeeeeccccccccccCC
Confidence 3678889998865422 2 45678999999984 567888887 568888877654331 1 1111122 234
Q ss_pred -ceEEEcCCCCcEEEEccCCCCeEEEEe--cCCCCcEEEEe------CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeC
Q psy6570 75 -YDIALEPLSGRMFWTELGIKPRISGAS--IDGKNKFNLVD------NNIQWPTGITIDYPSQRLYWADPKARTIESINL 145 (713)
Q Consensus 75 -~~iavD~~~~~ly~td~~~~~~I~~~~--~dG~~~~~l~~------~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~ 145 (713)
.|||+|+.+++||++.......|++.+ +.+...+++.. ..+..+.+|++|+.+++||+.....+.|..++.
T Consensus 123 ~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~ 202 (255)
T 3qqz_A 123 FEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTL 202 (255)
T ss_dssp CEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred cceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcC
Confidence 899999998899998755433778776 22222233211 135678999999999999999999999999999
Q ss_pred CCCceeEEEecC------CCCccceeeeee-CCeEEEEeCCCCcEEEEcccC
Q psy6570 146 NGKDRFVVYHTE------DNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFG 190 (713)
Q Consensus 146 ~g~~~~~~~~~~------~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~ 190 (713)
+|..+..+.-.. ..+++|.||+++ +++||++. ..+.++++.+..
T Consensus 203 ~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs-E~n~~y~f~~~~ 253 (255)
T 3qqz_A 203 VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS-EPNRFYRFTPQS 253 (255)
T ss_dssp TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE-TTTEEEEEEC--
T ss_pred CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc-CCceEEEEEecC
Confidence 998554443221 125789999998 67899995 446889987753
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.20 E-value=7.2e-10 Score=114.02 Aligned_cols=162 Identities=19% Similarity=0.239 Sum_probs=120.4
Q ss_pred cccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCe
Q psy6570 17 NLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPR 96 (713)
Q Consensus 17 ~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~ 96 (713)
..+.+..+...++|+++++.++.|||++. ..++|++++++|+.. ++. .....|.+|++|+ +|+||+++.+.. +
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~---~~~~i~~~~~~g~~~-~~~-~~~~~~~gl~~d~-dG~l~v~~~~~~-~ 108 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDL---VGRRVLGWREDGTVD-VLL-DATAFTNGNAVDA-QQRLVHCEHGRR-A 108 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEET---TTTEEEEEETTSCEE-EEE-ESCSCEEEEEECT-TSCEEEEETTTT-E
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEEC---CCCEEEEEeCCCCEE-EEe-CCCCccceeeECC-CCCEEEEECCCC-E
Confidence 44667888999999999998888999998 788999999987643 333 2346799999997 678999987766 8
Q ss_pred EEEEecCCCCcEEEEe----CCCCCCeeEEEeCCCCeEEEEcC-----------------CCCcEEEEeCCCCceeEEEe
Q psy6570 97 ISGASIDGKNKFNLVD----NNIQWPTGITIDYPSQRLYWADP-----------------KARTIESINLNGKDRFVVYH 155 (713)
Q Consensus 97 I~~~~~dG~~~~~l~~----~~~~~p~glavd~~~~~LY~~d~-----------------~~~~I~~~~~~g~~~~~~~~ 155 (713)
|.+++.+|+. +++.. ..+..|+.|++|+ .++||++|+ ....|++++.++...+.+.
T Consensus 109 v~~~~~~g~~-~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~- 185 (305)
T 3dr2_A 109 ITRSDADGQA-HLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA- 185 (305)
T ss_dssp EEEECTTSCE-EEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-
T ss_pred EEEECCCCCE-EEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-
Confidence 9999998653 33432 1256799999995 678999874 1357999998544444443
Q ss_pred cCCCCccceeeeee--CCeEEEEeCCC-----CcEEEEcccCC
Q psy6570 156 TEDNGYKPYKLEVF--EDNLYFSTYRT-----NNILKINKFGN 191 (713)
Q Consensus 156 ~~~~~~~p~~i~~~--~~~ly~td~~~-----~~i~~~~~~~~ 191 (713)
. +..|.+|++. +..|||++... +.|++++..+.
T Consensus 186 ~---~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~ 225 (305)
T 3dr2_A 186 D---LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG 225 (305)
T ss_dssp E---ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred c---CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence 2 4567777775 45799999863 78888876543
|
| >1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4.2e-12 Score=110.07 Aligned_cols=101 Identities=25% Similarity=0.622 Sum_probs=78.0
Q ss_pred CCCCCCCCCCCcEEcCC-CCCeeccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEeecCCCceeeCCCCCc--
Q psy6570 506 KKCDTCTCLNGGTCIPN-SKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYS-- 582 (713)
Q Consensus 506 ~~C~~~~C~~~g~C~~~-~~~~~C~C~~g~~G~~C~~~~~~~~c~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~-- 582 (713)
++|...||.+ +|+++ .++|+|.|++||+|..++.. .|. ++|...+|. ++|++ .++|+|.|++||+
T Consensus 5 deC~~~pC~~--~C~~~~~g~y~C~C~~Gy~g~~~~~~----~C~---~~C~~~~C~--~~C~~-~~~y~C~C~~Gy~~~ 72 (118)
T 1dx5_I 5 DPCFRANCEY--QCQPLDQTSYLCVCAEGFAPIPHEPH----RCQ---MFCNQTACP--ADCDP-NTQASCECPEGYILD 72 (118)
T ss_dssp CGGGGCCCSS--EEEECSSSCEEEECCTTEEEETTEEE----EEE---ECCCSSEEE--CEECT-TSTTCEECCTTEEEE
T ss_pred ccCCCCCCCC--CCCCCCCCCEEeECCCCccccCCCCC----ccc---cccCCCCCC--CcccC-CCCeEeECCCCccCC
Confidence 3455668874 99999 88999999999998865321 011 134445554 68988 5899999999999
Q ss_pred -CCCCCcCCCCCCC-C-CCCCCCCeEecCCCCcceeecCCCcccC
Q psy6570 583 -GKQCTEREDSPSC-H-NYCDNAGLCSYSKQGKPVCTCVNGWSGI 624 (713)
Q Consensus 583 -G~~C~~~~~~~~C-~-~~C~~~g~C~~~~~g~~~C~C~~G~~G~ 624 (713)
|..|+++ ++| . ++| +++|++.. ++|+|.|++||+|.
T Consensus 73 ~g~~C~di---deC~~~~~C--~~~C~n~~-g~y~C~C~~G~~g~ 111 (118)
T 1dx5_I 73 DGFICTDI---DECENGGFC--SGVCHNLP-GTFECICGPDSALA 111 (118)
T ss_dssp TTTEEEEC---CHHHHCSSC--SSEEEECS-SSEEEEECSSSSCE
T ss_pred CCCccccc---cccCCCCCC--cCeEEeCC-CCEEEECCCCCccC
Confidence 8899765 888 3 789 68999886 99999999999864
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.18 E-value=4e-10 Score=118.13 Aligned_cols=173 Identities=16% Similarity=0.157 Sum_probs=118.5
Q ss_pred CCceeEEEccCcc--cEE-ec-----CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecC-CceEEEEEc--------
Q psy6570 6 SGNVTRVKREMNL--KTV-LS-----NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE-GRKKRTLLN-------- 68 (713)
Q Consensus 6 ~~~I~~~~~~~~~--~~~-~~-----~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~-G~~~~~l~~-------- 68 (713)
.++|.++++.+.. +++ +. ....|.+|++|+.++.+|++|.+....+.|.+++++ |+..+++..
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~ 171 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED 171 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence 4788888887533 222 11 123579999998888999999722125688899986 443333211
Q ss_pred -----CC---------------CCCcceEEEcCCCCcEEEEccCCCCeEEEEecC----CCC-------cEEEEeCCCCC
Q psy6570 69 -----TG---------------LNEPYDIALEPLSGRMFWTELGIKPRISGASID----GKN-------KFNLVDNNIQW 117 (713)
Q Consensus 69 -----~~---------------~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~d----G~~-------~~~l~~~~~~~ 117 (713)
.+ ...|++|+++|..+.||+++.... +|++++.+ +.. ..... .....
T Consensus 172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~ 249 (343)
T 2qe8_A 172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERY-SEKPI 249 (343)
T ss_dssp CCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCS
T ss_pred cceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEec-ccCCC
Confidence 00 134789999998888999998776 89998753 211 00111 12347
Q ss_pred CeeEEEeCCCCeEEEEcCCCCcEEEEeC-CCCceeEEEecCCCCccceeeeee-CCeEEEEeCCCCcE
Q psy6570 118 PTGITIDYPSQRLYWADPKARTIESINL-NGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNI 183 (713)
Q Consensus 118 p~glavd~~~~~LY~~d~~~~~I~~~~~-~g~~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i 183 (713)
|.||++|+ +++||+++...++|.+++. +|.. ..+.... .+..|.++++. +++||+++...+++
T Consensus 250 pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~-~~~~~~~-~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 250 CDGISIDK-DHNIYVGDLAHSAIGVITSADRAY-KLLVTDE-KLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp CSCEEECT-TCCEEEEEGGGTEEEEEETTTTEE-EEEEECG-GGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred CceEEECC-CCCEEEEccCCCeEEEEECCCCCE-EEEEECC-ceecCCeeEECCCCcEEEEeCccccc
Confidence 99999996 5899999999999999999 7753 3343322 36689999986 67899998765544
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.3e-10 Score=120.15 Aligned_cols=157 Identities=11% Similarity=0.103 Sum_probs=114.1
Q ss_pred cccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEE------cCCCCCcceEEEcCC---CCcEE
Q psy6570 17 NLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLL------NTGLNEPYDIALEPL---SGRMF 87 (713)
Q Consensus 17 ~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~------~~~~~~p~~iavD~~---~~~ly 87 (713)
..+++++.+..|.+|++++.+++||+++. .++|.+++.+|+..+.+. ..+...|.+|+++|. +++||
T Consensus 9 ~~~~va~~l~~P~~i~~~pdG~~l~V~e~----~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lY 84 (353)
T 2g8s_A 9 NVEVLQDKLDHPWALAFLPDNHGMLITLR----GGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIW 84 (353)
T ss_dssp EEEEEEEEESSEEEEEECSTTCCEEEEET----TTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEE
T ss_pred EEEEEECCCCCcEEEEEcCCCCEEEEEeC----CceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEE
Confidence 45667788999999999986444999997 479999998876432221 123456889999986 89999
Q ss_pred EEccCC------CCeEEEEecCCC-----CcEEEEeC------CCCCCeeEEEeCCCCeEEEEcCC-------------C
Q psy6570 88 WTELGI------KPRISGASIDGK-----NKFNLVDN------NIQWPTGITIDYPSQRLYWADPK-------------A 137 (713)
Q Consensus 88 ~td~~~------~~~I~~~~~dG~-----~~~~l~~~------~~~~p~glavd~~~~~LY~~d~~-------------~ 137 (713)
+++... ..+|.|+++++. ..++++.. ..+.+.+|++++ +++||++... .
T Consensus 85 v~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~ 163 (353)
T 2g8s_A 85 LSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQ 163 (353)
T ss_dssp EEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCT
T ss_pred EEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCC
Confidence 997541 237999888754 23444431 345689999997 5699999632 3
Q ss_pred CcEEEEeCCCC-------------ceeEEEecCCCCccceeeeee--CCeEEEEeCCCC
Q psy6570 138 RTIESINLNGK-------------DRFVVYHTEDNGYKPYKLEVF--EDNLYFSTYRTN 181 (713)
Q Consensus 138 ~~I~~~~~~g~-------------~~~~~~~~~~~~~~p~~i~~~--~~~ly~td~~~~ 181 (713)
++|+|++.+|+ ..+++... +.+|.+|+++ .+.||++|....
T Consensus 164 g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G---~rnp~gl~~d~~~g~l~~~d~g~~ 219 (353)
T 2g8s_A 164 GKLVRLTDQGEIPDDNPFIKESGVRAEIWSYG---IRNPQGMAMNPWSNALWLNEHGPR 219 (353)
T ss_dssp TEEEEEETTSCCCTTCTTTTSTTSCTTEEEEC---CSEEEEEEEETTTTEEEEEEECSB
T ss_pred eEEEEECCCCCCCCCCCCcCCCCCCccEEEEc---CcCccceEEECCCCCEEEEecCCC
Confidence 58999999986 34444443 7789999998 479999997643
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.5e-09 Score=109.81 Aligned_cols=188 Identities=11% Similarity=0.179 Sum_probs=132.4
Q ss_pred CCceeEEEccCccc-EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceE-EEEEcCCCC--------Ccc
Q psy6570 6 SGNVTRVKREMNLK-TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKK-RTLLNTGLN--------EPY 75 (713)
Q Consensus 6 ~~~I~~~~~~~~~~-~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~-~~l~~~~~~--------~p~ 75 (713)
.++|+.+++.+... ..+.....|.++++++.++.||+++. ..+.|.+++++.... ..+...... .|.
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNT---VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPR 144 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEET---TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEE
T ss_pred CccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEec---CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCc
Confidence 56788888776432 22444567999999999888999998 678999999875443 333322111 278
Q ss_pred eEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEe
Q psy6570 76 DIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYH 155 (713)
Q Consensus 76 ~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~ 155 (713)
+|+++|..++||+++.+...+|++.+++.......+......|.++++++++++||+++. .+.|+.+++..........
T Consensus 145 ~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~~ 223 (353)
T 3vgz_A 145 ELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA-DGELITIDTADNKILSRKK 223 (353)
T ss_dssp EEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT-TSEEEEEETTTTEEEEEEE
T ss_pred eEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC-CCeEEEEECCCCeEEEEEE
Confidence 999999888999999654448999998765544444323456999999999999999986 6789999986554433322
Q ss_pred c-CC-CCccceeeeee--CCeEEEEeCCCCcEEEEcccCCCcceee
Q psy6570 156 T-ED-NGYKPYKLEVF--EDNLYFSTYRTNNILKINKFGNSDFNVL 197 (713)
Q Consensus 156 ~-~~-~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~~~~~ 197 (713)
. .. ....+.++++. +++||+++...+.|+.++...+.....+
T Consensus 224 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 269 (353)
T 3vgz_A 224 LLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV 269 (353)
T ss_dssp CCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred cCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 2 11 12345556664 6689999988899999988666544443
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.1e-09 Score=110.13 Aligned_cols=187 Identities=13% Similarity=0.148 Sum_probs=131.0
Q ss_pred cccCCceeEEEccCcccEE-ecC--CC--------CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCC
Q psy6570 3 SISSGNVTRVKREMNLKTV-LSN--LH--------DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGL 71 (713)
Q Consensus 3 d~~~~~I~~~~~~~~~~~~-~~~--~~--------~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~ 71 (713)
+...+.|..+++.+...+. +.. .. .|.++++++.++.||+++.+ ..+.|.+++++.......+....
T Consensus 107 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~ 184 (353)
T 3vgz_A 107 NTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG--KESVIWVVDGGNIKLKTAIQNTG 184 (353)
T ss_dssp ETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES--SSCEEEEEETTTTEEEEEECCCC
T ss_pred ecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC--CCceEEEEcCCCCceEEEecCCC
Confidence 3445778888877643221 111 11 27889999999999999852 46789999998666555554233
Q ss_pred CCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeC----CCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC
Q psy6570 72 NEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDN----NIQWPTGITIDYPSQRLYWADPKARTIESINLNG 147 (713)
Q Consensus 72 ~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~----~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g 147 (713)
..|.+|+++|..++||+++.. . .|.+.++........+.. ....|.+|++++.+++||+++...+.|+.+++..
T Consensus 185 ~~~~~~~~s~dg~~l~~~~~~-~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 262 (353)
T 3vgz_A 185 KMSTGLALDSEGKRLYTTNAD-G-ELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN 262 (353)
T ss_dssp TTCCCCEEETTTTEEEEECTT-S-EEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred CccceEEECCCCCEEEEEcCC-C-eEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 569999999988889999863 3 788888765544433332 2445778999999999999999889999999865
Q ss_pred CceeEEEecCCCCccceeeeee--CCeEEEEeCCCCcEEEEcccCCCcceee
Q psy6570 148 KDRFVVYHTEDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKFGNSDFNVL 197 (713)
Q Consensus 148 ~~~~~~~~~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~~~~~ 197 (713)
......... ..|.++++. +++||+++...+.|..++...+.....+
T Consensus 263 ~~~~~~~~~----~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 263 GNILAKVAA----PESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp CCEEEEEEC----SSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CcEEEEEEc----CCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 443332222 234556654 5679999988899999987665544443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-09 Score=112.81 Aligned_cols=160 Identities=19% Similarity=0.133 Sum_probs=116.9
Q ss_pred cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEE------cCCCCCcceEEEcCC---CCcEEEE
Q psy6570 19 KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLL------NTGLNEPYDIALEPL---SGRMFWT 89 (713)
Q Consensus 19 ~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~------~~~~~~p~~iavD~~---~~~ly~t 89 (713)
++++.+|..|++|++++. +.||+++. ..++|.+++.++.....+. ..+...|.+||++|. +++||++
T Consensus 25 ~~va~gL~~P~~ia~~pd-G~llVter---~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~ 100 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPG-GDLLVSSR---DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY 100 (347)
T ss_dssp EEEECCCSSEEEEEECTT-SCEEEEET---TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred EEeecCCCCceEEEEcCC-CcEEEEEe---cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence 566889999999999976 67999997 6789999987643333332 123567899999984 7899986
Q ss_pred cc--CCCCeEEEEecCCC--------CcEEEEe----CCCCCCeeEEEeCCCCeEEEEc-------------CCCCcEEE
Q psy6570 90 EL--GIKPRISGASIDGK--------NKFNLVD----NNIQWPTGITIDYPSQRLYWAD-------------PKARTIES 142 (713)
Q Consensus 90 d~--~~~~~I~~~~~dG~--------~~~~l~~----~~~~~p~glavd~~~~~LY~~d-------------~~~~~I~~ 142 (713)
.. ..+ +|.|+.+++. ..++|+. ...+.+..|++++ .++||++. ...++|+|
T Consensus 101 yt~~~~~-~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlR 178 (347)
T 3das_A 101 FTSASDN-RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILR 178 (347)
T ss_dssp EECSSSE-EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEE
T ss_pred EecCCCC-EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEE
Confidence 43 334 8999988872 2344443 2356778899996 56899994 23578999
Q ss_pred EeCCCC--------ceeEEEecCCCCccceeeeee-CCeEEEEeCCCC---cEEEEc
Q psy6570 143 INLNGK--------DRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTN---NILKIN 187 (713)
Q Consensus 143 ~~~~g~--------~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~---~i~~~~ 187 (713)
++.+|+ ..+++... +++|.+|+++ .+.||+++.+.. +|.++.
T Consensus 179 i~~dG~ip~~nPf~~~~i~a~G---~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~ 232 (347)
T 3das_A 179 MTPDGEPAPGNPFPGSPVYSYG---HRNVQGLAWDDKQRLFASEFGQDTWDELNAIK 232 (347)
T ss_dssp ECTTSSBCTTCSSTTCCEEEBC---CSBCCEEEECTTCCEEEEECCSSSCEEEEEEC
T ss_pred EeCCCCccCCCCCCCCeEEeeC---CCCcceEEECCCCCEEEEecCCCCCceeeEEc
Confidence 999997 44555443 7899999988 578999997653 355543
|
| >1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2.8e-11 Score=99.20 Aligned_cols=83 Identities=17% Similarity=0.344 Sum_probs=61.0
Q ss_pred CCccccCCCCccCCCCCCCC-CCCCCCCeeecCCCCCCeeecCCCcccCCcc---ccCCCCCCCCCCceeeCCCCCCCCC
Q psy6570 293 EELNVTSGKMSCKVAPARTC-YLDCNHGTCEFDDDFDPHCICQENFYGTYCE---KVNNSMCPCLNQGMCYPDLTHPEPT 368 (713)
Q Consensus 293 ~~~c~C~~g~~~~~~~~~~C-~~~C~~~~C~~~~~~~~~C~C~~g~~G~~C~---~~~c~~~~C~~~~~C~~~~~~~~~~ 368 (713)
+|.|.|.+||.|..+++++| .++|.++ .+.|.|.|++||. .|+ ...|...||+++|.|++... .++
T Consensus 1 sy~C~C~~g~~g~~c~~~~c~~~pC~n~------~~~y~C~C~~G~~--~C~~~~~~~C~~~pC~ngg~C~~~~~--~~~ 70 (91)
T 1tpg_A 1 SYQVICRDEKTQMIYQQHQSWLRPVLRS------NRVEYCWCNSGRA--QCHSVPVKSCSEPRCFNGGTCQQALY--FSD 70 (91)
T ss_dssp CCCCCCBCSSSCCBCCSSCEEEEECSSS------SCEEEEECSSSCC--BCCEECEEECSSCCSCTTCEEEEESS--SSC
T ss_pred CeeeECCCCCcCCeECCCcccCCccccC------CCCcEeECCCCCc--ccccCcCCcccCCCCCCCCEeecCCC--CCC
Confidence 36788888888888888877 4556543 2347899999997 786 23388888988888987541 136
Q ss_pred ceeeCCCCcccCCCCcc
Q psy6570 369 YKCHCAPSYTGARCESR 385 (713)
Q Consensus 369 ~~C~C~~G~~g~~C~~~ 385 (713)
|+|.|++||+|..|+..
T Consensus 71 ~~C~C~~G~~G~~Ce~~ 87 (91)
T 1tpg_A 71 FVCQCPEGFAGKSCEID 87 (91)
T ss_dssp EEEECCTTCBSSSCCBC
T ss_pred eEeECCCCCcCCcCCcC
Confidence 88999999998888754
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.5e-09 Score=108.13 Aligned_cols=189 Identities=13% Similarity=0.058 Sum_probs=125.8
Q ss_pred CCcccCCceeEEEccCcc-cEE-ecCCC-------CCceEEE---eccCCeEEE-eecCC---------CCCCeEEEEec
Q psy6570 1 MASISSGNVTRVKREMNL-KTV-LSNLH-------DPRGVAV---DWVGKNLYW-TDAGG---------RSSNNIMVSTL 58 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~~-~~~-~~~~~-------~p~gla~---D~~~~~ly~-td~~~---------~~~~~I~~~~~ 58 (713)
|++...++|.++++.+.. +.+ +..+. .|.||.+ |+. ++|++ ++.+. +....|.++++
T Consensus 29 vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl 107 (334)
T 2p9w_A 29 QSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFNFADQSSHGASSFHSFNL 107 (334)
T ss_dssp EEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTCTTSCCSSSCCEEEEEES
T ss_pred EEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEcccccccccccccCCCCEEEEEcC
Confidence 356778999999998543 222 33322 4689999 776 78887 55211 12467999999
Q ss_pred C----CceEEEEEcC------------CCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeC-----CCCC
Q psy6570 59 E----GRKKRTLLNT------------GLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDN-----NIQW 117 (713)
Q Consensus 59 ~----G~~~~~l~~~------------~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~-----~~~~ 117 (713)
+ |+.+..+-.. ....+++|++|+ .|++|+++....+.|+|++.||+....+... ....
T Consensus 108 ~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G 186 (334)
T 2p9w_A 108 PLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPG 186 (334)
T ss_dssp SCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCS
T ss_pred CcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccC
Confidence 9 5544333211 123488999995 7999999987623999999999965555421 1234
Q ss_pred CeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEec--C--CCCccceee-ee-eCCeE-EEEeCCCCcEEEEcccC
Q psy6570 118 PTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHT--E--DNGYKPYKL-EV-FEDNL-YFSTYRTNNILKINKFG 190 (713)
Q Consensus 118 p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~--~--~~~~~p~~i-~~-~~~~l-y~td~~~~~i~~~~~~~ 190 (713)
++||++++.+..|++++. .++|++++++...+..+... . ..+..|.+| .+ .++.+ ++++...+.+...++++
T Consensus 187 ~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 187 YSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp CSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred cceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 789999999999999999 99999999984332112211 1 135567775 44 35655 88887666555555555
Q ss_pred CC
Q psy6570 191 NS 192 (713)
Q Consensus 191 ~~ 192 (713)
-.
T Consensus 266 W~ 267 (334)
T 2p9w_A 266 WK 267 (334)
T ss_dssp TS
T ss_pred cc
Confidence 33
|
| >2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-12 Score=117.73 Aligned_cols=128 Identities=26% Similarity=0.527 Sum_probs=81.3
Q ss_pred cCCCCCCCCCcEeccCCCCccccCCCCCcCCCCccCCCCCCCCCCeeecCCCCCeecCCCCccCCCCCCc--cccCCCCC
Q psy6570 417 QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQCKNYCVNGECSITDSGPKCMCSPGYSGKKCDTC--TCLNGDSG 494 (713)
Q Consensus 417 ~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~C~~~~C~~~~~~~~C~~~~~~~~C~C~~G~~g~~C~~~--~C~~~~~~ 494 (713)
+|++.||.+ ++|+++.++|+|.|++||+|..+. ..|.+.. ...|.++|.|..|+.. .|.. .
T Consensus 6 eC~~~pC~n-g~C~n~~g~y~C~C~~G~~g~~~~----------~~C~~~~---~~~C~~~~~g~~C~~~~~~c~~---~ 68 (147)
T 2w86_A 6 ECESSPCIN-GVCKNSPGSFICECSSESTLDPTK----------TICIETI---KGTCWQTVIDGRCEININGATL---K 68 (147)
T ss_dssp GGGGCCSBT-SEEEEETTEEEEECCTTEEECTTS----------SBEEECC---CEEEEEEEETTEEEEEEEEEEC---H
T ss_pred cCcCCCCCC-CEeECCCCCEEeECCCCcccCCCC----------CeecCCC---CCcccCCCCCCccccCCCcccc---C
Confidence 677778875 688888888888888888876543 2344332 2355566666655421 1100 0
Q ss_pred CcccCC-CCccCCCCCCCCCCCCcEEcCCCCCeeccCCCCCC---CCCCcccCCCCCCCCCCCCCCCC--CCCCCcEEee
Q psy6570 495 PKCMCS-PGYSGKKCDTCTCLNGGTCIPNSKNNVCKCPSQYT---GRRCECAVGDTSCASLANKCTPN--YCSNNGTCVL 568 (713)
Q Consensus 495 ~~C~C~-~G~~g~~C~~~~C~~~g~C~~~~~~~~C~C~~g~~---G~~C~~~~~~~~c~~~~~~C~~~--~C~~~~~C~~ 568 (713)
..|... .++.|..|. .| .|.|.|++||+ |..|+ + +++|..+ +|.+ ++|++
T Consensus 69 ~~C~~~~g~~~g~~C~--------~c-----~~~C~C~~Gy~~~~g~~C~-d---------ideC~~~~~~C~~-g~C~n 124 (147)
T 2w86_A 69 SQCCSSLGAAWGSPCT--------LC-----QVDPICGKGYSRIKGTQCE-D---------IDECEVFPGVCKN-GLCVN 124 (147)
T ss_dssp HHHHTTTCSEETTTTE--------EC-----CCCTTTCTTEEEEETTEEE-E---------CCHHHHSTTCSSS-SEEEE
T ss_pred CccccCcCcccCCCcc--------cC-----CCcccCCCccccCCCCccC-c---------cccccCCCCCCCC-CEEEC
Confidence 011111 111222221 12 37899999995 88887 3 6788744 5974 69999
Q ss_pred cCCCceeeCCCCCcCCC
Q psy6570 569 IEGKPSCKCLPPYSGKQ 585 (713)
Q Consensus 569 ~~g~~~C~C~~G~~G~~ 585 (713)
+.|+|+|.|++||+|..
T Consensus 125 ~~g~y~C~C~~Gy~g~~ 141 (147)
T 2w86_A 125 TRGSFKCQCPSGMTLDA 141 (147)
T ss_dssp ETTEEEEECCTTCCBCT
T ss_pred CCCCEEeeCCCCCccCC
Confidence 99999999999999754
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-08 Score=99.27 Aligned_cols=182 Identities=12% Similarity=0.110 Sum_probs=128.3
Q ss_pred CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCC
Q psy6570 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGK 105 (713)
Q Consensus 26 ~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~ 105 (713)
..+.||++|+.+++||.+.. ...+|++++++|+..+.+...+...+.||++++ ++.+|+++.+.+ +|+++.++..
T Consensus 27 ~~lSGla~~~~~~~L~aV~d---~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~-~l~~~~v~~~ 101 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTIN---KPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDY-AIYVISLTPN 101 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEE---TTEEEEEEETTCCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTT-EEEEEEECTT
T ss_pred cCcceeEEeCCCCEEEEEEC---CCCeEEEEeCCCCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCC-cEEEEEcCCC
Confidence 67999999998899998666 578999999999887777556678899999994 667778877766 8988877655
Q ss_pred Cc-EEE--EeCCC-CCC-----eeEEEeCCCCeEEEEcCCCC-cEEEEe--CCCCceeEEEe----cCCCCccceeeeee
Q psy6570 106 NK-FNL--VDNNI-QWP-----TGITIDYPSQRLYWADPKAR-TIESIN--LNGKDRFVVYH----TEDNGYKPYKLEVF 169 (713)
Q Consensus 106 ~~-~~l--~~~~~-~~p-----~glavd~~~~~LY~~d~~~~-~I~~~~--~~g~~~~~~~~----~~~~~~~p~~i~~~ 169 (713)
.. ..+ +...+ ..| .|||+|+.+++||++..... .|+.++ +.+...+++.. ....+..+.+|+++
T Consensus 102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~d 181 (255)
T 3qqz_A 102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFN 181 (255)
T ss_dssp CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEc
Confidence 43 111 11122 234 89999999999999976554 788887 22233344321 12235567888887
Q ss_pred --CCeEEEEeCCCCcEEEEcccCCCcceeeecc---------ccccccEEEEeec
Q psy6570 170 --EDNLYFSTYRTNNILKINKFGNSDFNVLANN---------LNRASDVLILQEN 213 (713)
Q Consensus 170 --~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~---------~~~~~~i~v~~~~ 213 (713)
.++||+....++.+..++..+. .+..+... +..|.+|++....
T Consensus 182 p~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G 235 (255)
T 3qqz_A 182 QQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASG 235 (255)
T ss_dssp TTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTC
T ss_pred CCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCC
Confidence 5689999989999999997654 33333221 3567787776543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-09 Score=114.19 Aligned_cols=184 Identities=11% Similarity=0.165 Sum_probs=121.6
Q ss_pred CCceeEEEccCcccE-E-------ecCCCCCceEEEecc---CCeEEEeecCCCC----CCeEEEEecCCc-----eEEE
Q psy6570 6 SGNVTRVKREMNLKT-V-------LSNLHDPRGVAVDWV---GKNLYWTDAGGRS----SNNIMVSTLEGR-----KKRT 65 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~-~-------~~~~~~p~gla~D~~---~~~ly~td~~~~~----~~~I~~~~~~G~-----~~~~ 65 (713)
.++|++++.++.... + ......|.+|++++. ++.||+++..... ..+|.++++++. ..++
T Consensus 38 ~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~ 117 (353)
T 2g8s_A 38 GGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRT 117 (353)
T ss_dssp TTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEE
T ss_pred CceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEE
Confidence 478888887664321 1 223456789999985 7999999862100 457999888653 2344
Q ss_pred EEcC------CCCCcceEEEcCCCCcEEEEccCC------------CCeEEEEecCCCC------------cEEEEeCCC
Q psy6570 66 LLNT------GLNEPYDIALEPLSGRMFWTELGI------------KPRISGASIDGKN------------KFNLVDNNI 115 (713)
Q Consensus 66 l~~~------~~~~p~~iavD~~~~~ly~td~~~------------~~~I~~~~~dG~~------------~~~l~~~~~ 115 (713)
++.. ....+.+|+++| +|+||++.... .++|+|++.||+. ...++...+
T Consensus 118 i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~ 196 (353)
T 2g8s_A 118 VFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGI 196 (353)
T ss_dssp EEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECC
T ss_pred EEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcC
Confidence 4421 234588999997 67999996321 2489999999972 233445588
Q ss_pred CCCeeEEEeCCCCeEEEEcCCCC---cEEEEeCCCCc---------------------------eeEEEecCCCCcccee
Q psy6570 116 QWPTGITIDYPSQRLYWADPKAR---TIESINLNGKD---------------------------RFVVYHTEDNGYKPYK 165 (713)
Q Consensus 116 ~~p~glavd~~~~~LY~~d~~~~---~I~~~~~~g~~---------------------------~~~~~~~~~~~~~p~~ 165 (713)
..|.+|++|+.+++||++|.... +|.++...+.. ...+.... ....|.+
T Consensus 197 rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G 275 (353)
T 2g8s_A 197 RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWK-DSPAVSG 275 (353)
T ss_dssp SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEES-SCCCEEE
T ss_pred cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeC-CCcCcce
Confidence 89999999987899999997643 45444321110 00000000 1235778
Q ss_pred eeee--------CCeEEEEeCCCCcEEEEcccCC
Q psy6570 166 LEVF--------EDNLYFSTYRTNNILKINKFGN 191 (713)
Q Consensus 166 i~~~--------~~~ly~td~~~~~i~~~~~~~~ 191 (713)
++++ .+.||++++..++|++++..++
T Consensus 276 ~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~ 309 (353)
T 2g8s_A 276 MAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGD 309 (353)
T ss_dssp EEEECCSSSGGGTTEEEEEETTTTEEEEEEEETT
T ss_pred eEEECCccCcccCCcEEEEEccCCEEEEEEeCCC
Confidence 8885 4789999999999999998754
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.7e-09 Score=107.71 Aligned_cols=205 Identities=16% Similarity=0.179 Sum_probs=134.0
Q ss_pred cccCCceeEEEccC-cccEE-------ecCCCCCceEEEec---cCCeEEEeecCCCCCCeEEEEecCCc--------eE
Q psy6570 3 SISSGNVTRVKREM-NLKTV-------LSNLHDPRGVAVDW---VGKNLYWTDAGGRSSNNIMVSTLEGR--------KK 63 (713)
Q Consensus 3 d~~~~~I~~~~~~~-~~~~~-------~~~~~~p~gla~D~---~~~~ly~td~~~~~~~~I~~~~~~G~--------~~ 63 (713)
+...++|++++.++ ....+ ..+...|.|||+++ .++.||++.... ..++|.++.+++. ..
T Consensus 49 er~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~-~~~~v~R~~~~~~~~~~~~~~~~ 127 (347)
T 3das_A 49 SRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA-SDNRIVRMLYDEKKPSGEQLGAP 127 (347)
T ss_dssp ETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS-SSEEEEEEEBCTTSCTTCCBCCC
T ss_pred EecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC-CCCEEEEEEeCCCCcccccCCCc
Confidence 33478888888654 22222 23566789999998 378999975421 3578999988762 13
Q ss_pred EEEEc----CCCCCcceEEEcCCCCcEEEEcc------------CCCCeEEEEecCCC--------CcEEEEeCCCCCCe
Q psy6570 64 RTLLN----TGLNEPYDIALEPLSGRMFWTEL------------GIKPRISGASIDGK--------NKFNLVDNNIQWPT 119 (713)
Q Consensus 64 ~~l~~----~~~~~p~~iavD~~~~~ly~td~------------~~~~~I~~~~~dG~--------~~~~l~~~~~~~p~ 119 (713)
++|+. ........|++++ +|+||++.- ...++|+|++.||+ .. .++...+..|.
T Consensus 128 ~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~-~i~a~G~RNp~ 205 (347)
T 3das_A 128 DTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGS-PVYSYGHRNVQ 205 (347)
T ss_dssp EEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTC-CEEEBCCSBCC
T ss_pred EEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCC-eEEeeCCCCcc
Confidence 34432 2245677899997 689999942 12358999999998 33 35566899999
Q ss_pred eEEEeCCCCeEEEEcCCCC---cEEEEeCCCCce---------------eEEEecCCCCccceeeeeeCCeEEEEeCCCC
Q psy6570 120 GITIDYPSQRLYWADPKAR---TIESINLNGKDR---------------FVVYHTEDNGYKPYKLEVFEDNLYFSTYRTN 181 (713)
Q Consensus 120 glavd~~~~~LY~~d~~~~---~I~~~~~~g~~~---------------~~~~~~~~~~~~p~~i~~~~~~ly~td~~~~ 181 (713)
||++|+ .+.||++|.... .|.++. .|.+- ..+.........|.||++.++.+|++.....
T Consensus 206 Gla~dp-~G~L~~~d~g~~~~deln~i~-~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~ 283 (347)
T 3das_A 206 GLAWDD-KQRLFASEFGQDTWDELNAIK-PGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAEGSVWMAGLRGE 283 (347)
T ss_dssp EEEECT-TCCEEEEECCSSSCEEEEEEC-TTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEETTEEEEEESTTC
T ss_pred eEEECC-CCCEEEEecCCCCCceeeEEc-CCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEcCceeeccccCC
Confidence 999998 699999997553 455544 22210 0011110011368899999999999999999
Q ss_pred cEEEEcccCCCc---ceeeec-cccccccEEEEee
Q psy6570 182 NILKINKFGNSD---FNVLAN-NLNRASDVLILQE 212 (713)
Q Consensus 182 ~i~~~~~~~~~~---~~~~~~-~~~~~~~i~v~~~ 212 (713)
+|+++...+... .+.+.. ...++.+|.+...
T Consensus 284 ~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pD 318 (347)
T 3das_A 284 RLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGG 318 (347)
T ss_dssp SEEEEEEETTEESSCCEEESTTTSSCEEEEEEEET
T ss_pred EEEEEEecCCceecceEEeecCCCCCccEEEECCC
Confidence 999998765432 122222 2345666665543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.08 E-value=7.9e-09 Score=104.44 Aligned_cols=161 Identities=11% Similarity=0.048 Sum_probs=116.1
Q ss_pred ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCC-------CCcceEEE---cCCCCcEEE-Ec
Q psy6570 22 LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGL-------NEPYDIAL---EPLSGRMFW-TE 90 (713)
Q Consensus 22 ~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~-------~~p~~iav---D~~~~~ly~-td 90 (713)
....-.|+++++|..++++|+++. ..++|.++++++...+.+...++ .+|.||.+ |+. ++|++ ++
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l---~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~ 84 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNL---YKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMK 84 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEET---TTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEE
T ss_pred cCcccCCcCccCcCCCCEEEEEec---cCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEc
Confidence 345567999999999999999998 78999999998654444332332 25789999 786 77777 55
Q ss_pred c------------CCCCeEEEEecC----CCCcEEEEeC------------CCCCCeeEEEeCCCCeEEEEcCCC-CcEE
Q psy6570 91 L------------GIKPRISGASID----GKNKFNLVDN------------NIQWPTGITIDYPSQRLYWADPKA-RTIE 141 (713)
Q Consensus 91 ~------------~~~~~I~~~~~d----G~~~~~l~~~------------~~~~p~glavd~~~~~LY~~d~~~-~~I~ 141 (713)
. +.. .|.+++++ |+....+-.. ....+++|++| ..+++|+++... +.|+
T Consensus 85 ~~~af~~~g~~~~g~~-~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD-~~GnaYVt~s~~~~~I~ 162 (334)
T 2p9w_A 85 NAKSFNFADQSSHGAS-SFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD-RDGNSYVAFALGMPAIA 162 (334)
T ss_dssp ETTTTCTTSCCSSSCC-EEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEEC-TTSCEEEEEEESSCEEE
T ss_pred ccccccccccccCCCC-EEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEEC-CCCCEEEeCCCCCCeEE
Confidence 2 123 79999999 4444333211 22358999999 579999999888 9999
Q ss_pred EEeCCCCceeEEEecC---CCCccceeeeee--CCeEEEEeCCCCcEEEEccc
Q psy6570 142 SINLNGKDRFVVYHTE---DNGYKPYKLEVF--EDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 142 ~~~~~g~~~~~~~~~~---~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~ 189 (713)
+++.||+....+.... .....+.||++. +..|++++. .+++++++..
T Consensus 163 rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~ 214 (334)
T 2p9w_A 163 RVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVS 214 (334)
T ss_dssp EECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECS
T ss_pred EEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCC
Confidence 9999999666554321 122346688887 446777776 9999999976
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.08 E-value=3.1e-09 Score=108.77 Aligned_cols=154 Identities=10% Similarity=0.035 Sum_probs=115.3
Q ss_pred EecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEE
Q psy6570 21 VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGA 100 (713)
Q Consensus 21 ~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~ 100 (713)
+.....-++|+++|+.++.|||+|. ..++|+++++++...+.+. .. ..|.+|++++ ++.||++.. . .|+++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~---~~~~i~~~d~~~~~~~~~~-~~-~~~~~i~~~~-dG~l~v~~~--~-~l~~~ 78 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDI---PAKKVCRWDSFTKQVQRVT-MD-APVSSVALRQ-SGGYVATIG--T-KFCAL 78 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEET---TTTEEEEEETTTCCEEEEE-CS-SCEEEEEEBT-TSSEEEEET--T-EEEEE
T ss_pred eccCCccccCCeEECCCCEEEEEEC---CCCEEEEEECCCCcEEEEe-CC-CceEEEEECC-CCCEEEEEC--C-eEEEE
Confidence 3456778999999998999999999 7899999999886655443 22 6799999997 556877762 3 89999
Q ss_pred ecCCCCcEEEEeC----CCCCCeeEEEeCCCCeEEEEcC-----------CCCcEEEEeCCCCceeEEEecCCCCcccee
Q psy6570 101 SIDGKNKFNLVDN----NIQWPTGITIDYPSQRLYWADP-----------KARTIESINLNGKDRFVVYHTEDNGYKPYK 165 (713)
Q Consensus 101 ~~dG~~~~~l~~~----~~~~p~glavd~~~~~LY~~d~-----------~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~ 165 (713)
++++...+.+... ....|++|++|+ .++||+++. ..++|++++.+|.... +... +..|.+
T Consensus 79 d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~---~~~png 153 (297)
T 3g4e_A 79 NWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQ---VDISNG 153 (297)
T ss_dssp ETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEE---ESBEEE
T ss_pred ECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-Eeec---cccccc
Confidence 9886655555542 234689999996 567999873 3457999998875443 3332 456778
Q ss_pred eeee--CCeEEEEeCCCCcEEEEcc
Q psy6570 166 LEVF--EDNLYFSTYRTNNILKINK 188 (713)
Q Consensus 166 i~~~--~~~ly~td~~~~~i~~~~~ 188 (713)
|++. +..|||++...++|++++.
T Consensus 154 i~~spdg~~lyv~~~~~~~i~~~~~ 178 (297)
T 3g4e_A 154 LDWSLDHKIFYYIDSLSYSVDAFDY 178 (297)
T ss_dssp EEECTTSCEEEEEEGGGTEEEEEEE
T ss_pred eEEcCCCCEEEEecCCCCcEEEEec
Confidence 8775 5579999999999999875
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=99.06 E-value=3e-09 Score=115.16 Aligned_cols=157 Identities=17% Similarity=0.207 Sum_probs=112.4
Q ss_pred cccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecC-CceEEEEE-cCC------CCCcceEEEcCC---CCc
Q psy6570 17 NLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE-GRKKRTLL-NTG------LNEPYDIALEPL---SGR 85 (713)
Q Consensus 17 ~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~-G~~~~~l~-~~~------~~~p~~iavD~~---~~~ 85 (713)
..++++.+|..|.+|++++. ++||+++. ..++|++++.+ |....++. ... ...+.+||++|. ++.
T Consensus 18 ~~~~~a~~l~~P~~~a~~pd-G~l~V~e~---~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~ 93 (454)
T 1cru_A 18 DKKVILSNLNKPHALLWGPD-NQIWLTER---ATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPY 93 (454)
T ss_dssp CEEEEECCCSSEEEEEECTT-SCEEEEET---TTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCE
T ss_pred EEEEEECCCCCceEEEEcCC-CcEEEEEc---CCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCE
Confidence 44667889999999999986 68999997 55689999875 54433222 121 234559999987 899
Q ss_pred EEEEccC-------C----CCeEEEEecCCC-----CcEEEEe----CCCCCCeeEEEeCCCCeEEEEcCC---------
Q psy6570 86 MFWTELG-------I----KPRISGASIDGK-----NKFNLVD----NNIQWPTGITIDYPSQRLYWADPK--------- 136 (713)
Q Consensus 86 ly~td~~-------~----~~~I~~~~~dG~-----~~~~l~~----~~~~~p~glavd~~~~~LY~~d~~--------- 136 (713)
||++... . ..+|.|+.++.. ..++|+. ...+.+.+|+|++ +++||++...
T Consensus 94 lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~ 172 (454)
T 1cru_A 94 IYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYL 172 (454)
T ss_dssp EEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGT
T ss_pred EEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCcccc
Confidence 9999853 0 238999988643 2344442 2357799999996 5689998421
Q ss_pred -----------------------CCcEEEEeCCCC-----------ceeEEEecCCCCccceeeeee-CCeEEEEeCCCC
Q psy6570 137 -----------------------ARTIESINLNGK-----------DRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTN 181 (713)
Q Consensus 137 -----------------------~~~I~~~~~~g~-----------~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~ 181 (713)
.++|+|++.||+ ..+++... +++|.+|+++ .+.||+++.+..
T Consensus 173 ~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G---~RNp~gla~dp~G~L~~~d~g~~ 249 (454)
T 1cru_A 173 FLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLG---HRNPQGLAFTPNGKLLQSEQGPN 249 (454)
T ss_dssp TSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBC---CSEEEEEEECTTSCEEEEEECSS
T ss_pred ccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEEC---CCCcceEEECCCCCEEEEecCCC
Confidence 367999999997 34445443 7899999998 578999987644
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-08 Score=98.30 Aligned_cols=174 Identities=6% Similarity=-0.055 Sum_probs=119.1
Q ss_pred CCceeEEEccCcccEE---ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCC
Q psy6570 6 SGNVTRVKREMNLKTV---LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPL 82 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~---~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~ 82 (713)
.++|.++++.+.+.+. +.....+.||+++ +++||++++ ..+.|.++|++......-+..+ .|.++.+.+.
T Consensus 43 ~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~---~~~~v~viD~~t~~v~~~i~~g--~~~g~glt~D 115 (266)
T 2iwa_A 43 RSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVW---LKNIGFIYDRRTLSNIKNFTHQ--MKDGWGLATD 115 (266)
T ss_dssp TCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEET---TCSEEEEEETTTTEEEEEEECC--SSSCCEEEEC
T ss_pred CCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEe---cCCEEEEEECCCCcEEEEEECC--CCCeEEEEEC
Confidence 5789999988754222 2233344566665 689999999 7899999998754333223333 3455545555
Q ss_pred CCcEEEEccCCCCeEEEEecCCCCcEEEEeC-----CCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCce-eEEEec
Q psy6570 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDN-----NIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDR-FVVYHT 156 (713)
Q Consensus 83 ~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~-----~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~-~~~~~~ 156 (713)
.++||+++ +.+ +|..++.+......-+.. .+..|++|++. +++||++.+..+.|.++|+..... ..+...
T Consensus 116 g~~l~vs~-gs~-~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~ 191 (266)
T 2iwa_A 116 GKILYGSD-GTS-ILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKDGTLLGWILLP 191 (266)
T ss_dssp SSSEEEEC-SSS-EEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCCEEEEEECH
T ss_pred CCEEEEEC-CCC-eEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCCCCeEEEEECCCCcEEEEEECC
Confidence 78999998 555 899999877554333321 24468899988 579999999999999999965443 333221
Q ss_pred C----------CCCccceeeeee--CCeEEEEeCCCCcEEEEcccC
Q psy6570 157 E----------DNGYKPYKLEVF--EDNLYFSTYRTNNILKINKFG 190 (713)
Q Consensus 157 ~----------~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~ 190 (713)
. .....|.||+++ +++||++....++|+.++...
T Consensus 192 g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 192 NLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp HHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred CcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 1 012356788887 568999999999999888653
|
| >2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.4e-12 Score=113.55 Aligned_cols=108 Identities=25% Similarity=0.468 Sum_probs=74.6
Q ss_pred CCCCCCCCCCCCcEEeecCCCceeeCCCCCcCCCC----CcCCC--------CCCC---CCCCCCCCeEecCCC------
Q psy6570 552 ANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQC----TERED--------SPSC---HNYCDNAGLCSYSKQ------ 610 (713)
Q Consensus 552 ~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C----~~~~~--------~~~C---~~~C~~~g~C~~~~~------ 610 (713)
+++|.+++|.+ ++|+++.++|+|.|++||+|..+ .+... ...| .+.|...+.|.+...
T Consensus 4 ideC~~~pC~n-g~C~n~~g~y~C~C~~G~~g~~~~~~C~~~~~~~C~~~~~g~~C~~~~~~c~~~~~C~~~~g~~~g~~ 82 (147)
T 2w86_A 4 IDECESSPCIN-GVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGSP 82 (147)
T ss_dssp CCGGGGCCSBT-SEEEEETTEEEEECCTTEEECTTSSBEEECCCEEEEEEEETTEEEEEEEEEECHHHHHTTTCSEETTT
T ss_pred CccCcCCCCCC-CEeECCCCCEEeECCCCcccCCCCCeecCCCCCcccCCCCCCccccCCCccccCCccccCcCcccCCC
Confidence 78999999974 79999999999999999997644 32100 0011 011111112222221
Q ss_pred ---CcceeecCCCcc---cCCCCcCCCCC---CCCCCCCeecCCCCccCCCCCceeeCCCCcccCC
Q psy6570 611 ---GKPVCTCVNGWS---GITCSERVSCA---HFCFNGGTCREQNYSLDPDLKPICICPRGYAGVR 667 (713)
Q Consensus 611 ---g~~~C~C~~G~~---G~~C~~~~~C~---~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~ 667 (713)
-.|.|.|++||+ |..|+++++|. ++|.+ ++|++ ..++|+|.|++||+|+.
T Consensus 83 C~~c~~~C~C~~Gy~~~~g~~C~dideC~~~~~~C~~-g~C~n------~~g~y~C~C~~Gy~g~~ 141 (147)
T 2w86_A 83 CTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGVCKN-GLCVN------TRGSFKCQCPSGMTLDA 141 (147)
T ss_dssp TEECCCCTTTCTTEEEEETTEEEECCHHHHSTTCSSS-SEEEE------ETTEEEEECCTTCCBCT
T ss_pred cccCCCcccCCCccccCCCCccCccccccCCCCCCCC-CEEEC------CCCCEEeeCCCCCccCC
Confidence 126789999995 89999999996 44885 58987 45679999999999875
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-08 Score=106.19 Aligned_cols=160 Identities=16% Similarity=0.197 Sum_probs=118.5
Q ss_pred EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCC----CC
Q psy6570 20 TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGI----KP 95 (713)
Q Consensus 20 ~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~----~~ 95 (713)
.+......|.++++|+. ++|||++. ..+.|.++++++...+.+.......|.+|++|+ ++.||+++... .
T Consensus 39 ~~~~~~~~~~~~~~~~~-g~l~~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~- 112 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQ-GQLFLLDV---FEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTG- 112 (333)
T ss_dssp EEESSCCCEEEEEECTT-SCEEEEET---TTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCC-
T ss_pred EEeccCccccCcEECCC-CCEEEEEC---CCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCc-
Confidence 34456678999999964 67999988 678999999987665554433346799999996 57888887654 4
Q ss_pred eEEEEecCCCCcEEEEe--CCCCCCeeEEEeCCCCeEEEEcCC------CCcEEEEeCCCCceeEEEecCCCCccceeee
Q psy6570 96 RISGASIDGKNKFNLVD--NNIQWPTGITIDYPSQRLYWADPK------ARTIESINLNGKDRFVVYHTEDNGYKPYKLE 167 (713)
Q Consensus 96 ~I~~~~~dG~~~~~l~~--~~~~~p~glavd~~~~~LY~~d~~------~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~ 167 (713)
.|+++++++...+.++. .....|++|++|+ +++||+++.. ...|++++.++.....+... ...|.+++
T Consensus 113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~i~ 188 (333)
T 2dg1_A 113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN---ISVANGIA 188 (333)
T ss_dssp EEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE---ESSEEEEE
T ss_pred eEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC---CCcccceE
Confidence 79999998877665543 2345789999996 5689998864 46899999887555544432 34577777
Q ss_pred ee--CCeEEEEeCCCCcEEEEccc
Q psy6570 168 VF--EDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 168 ~~--~~~ly~td~~~~~i~~~~~~ 189 (713)
+. +..||+++...+.|++++..
T Consensus 189 ~~~dg~~l~v~~~~~~~i~~~d~~ 212 (333)
T 2dg1_A 189 LSTDEKVLWVTETTANRLHRIALE 212 (333)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred ECCCCCEEEEEeCCCCeEEEEEec
Confidence 65 34699998888889998874
|
| >1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.2e-10 Score=98.53 Aligned_cols=88 Identities=25% Similarity=0.548 Sum_probs=64.4
Q ss_pred CCCCCCCC--------CCCCcEEeecCCCceeeCCCCCcCCCCCcCCCCCCCC---CCCCCCCeEecCCCCcceeecCCC
Q psy6570 552 ANKCTPNY--------CSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCH---NYCDNAGLCSYSKQGKPVCTCVNG 620 (713)
Q Consensus 552 ~~~C~~~~--------C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~~~C~---~~C~~~g~C~~~~~g~~~C~C~~G 620 (713)
+++|..++ |.++|+|+++.++|+|.|++||+|..|++..+.++|. ..|.+ +|++.. ++|+|.|++|
T Consensus 6 ~d~C~~~p~~~~C~~~C~~~g~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~C~~~~~~C~~--~C~n~~-g~y~C~C~~G 82 (114)
T 1aut_L 6 GDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTH--YCLEEV-GWRRCSCAPG 82 (114)
T ss_dssp --CCCCCSSCCSSSSTTTTSEEECCCSSCCCEEECTTEESTTSCEECCSSSSSSGGGGCSS--EEEECS-SSEEEECCTT
T ss_pred cccccCCCccccccccCCCcCCCCCCCCCcEeeCCCCCcCCCcCcCCcCCcCcCCCCCCCC--EeECCC-CCEEeECCCC
Confidence 45677666 9899999999999999999999999999865445673 24543 899887 8999999999
Q ss_pred ccc----CCCCcCCCCCCCCCCCCeecC
Q psy6570 621 WSG----ITCSERVSCAHFCFNGGTCRE 644 (713)
Q Consensus 621 ~~G----~~C~~~~~C~~~C~~~~~C~~ 644 (713)
|+| ..|+...+ .+|.+.+.|+.
T Consensus 83 ~~~~~~g~~C~~~~~--~pC~~~~~~i~ 108 (114)
T 1aut_L 83 YKLGDDLLQCHPAVK--FPCGRPWKRME 108 (114)
T ss_dssp EEECTTSSCEEECSS--SCTTCCC----
T ss_pred eeECCCCCccCcCcc--cCCCCCCccCC
Confidence 994 45654332 46777666665
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.02 E-value=5.9e-09 Score=107.14 Aligned_cols=175 Identities=18% Similarity=0.191 Sum_probs=120.4
Q ss_pred CceeEEEccCcccEE-ec-----CCCCCceEEEeccCCeEEEeecCCC------------CCCeEEEEecCCceEEEEEc
Q psy6570 7 GNVTRVKREMNLKTV-LS-----NLHDPRGVAVDWVGKNLYWTDAGGR------------SSNNIMVSTLEGRKKRTLLN 68 (713)
Q Consensus 7 ~~I~~~~~~~~~~~~-~~-----~~~~p~gla~D~~~~~ly~td~~~~------------~~~~I~~~~~~G~~~~~l~~ 68 (713)
+.|+++++++..+.+ .. ....|.+|++|+. ++||+++.... ....|++++++|+.... .
T Consensus 92 ~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~-~- 168 (314)
T 1pjx_A 92 LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE-GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQV-D- 168 (314)
T ss_dssp TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTT-SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEE-E-
T ss_pred CCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCC-CCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEe-c-
Confidence 367777777433322 11 2346899999975 68999987210 01579999988654433 2
Q ss_pred CCCCCcceEEEc----CCCCcEEEEccCCCCeEEEEecCCCCc----EEEEeC--CC-CCCeeEEEeCCCCeEEEEcCCC
Q psy6570 69 TGLNEPYDIALE----PLSGRMFWTELGIKPRISGASIDGKNK----FNLVDN--NI-QWPTGITIDYPSQRLYWADPKA 137 (713)
Q Consensus 69 ~~~~~p~~iavD----~~~~~ly~td~~~~~~I~~~~~dG~~~----~~l~~~--~~-~~p~glavd~~~~~LY~~d~~~ 137 (713)
..+..|.+|+++ +.++.|||++...+ +|++.++++... +.+... .. ..|.+|++|+ +++||+++...
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~-~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~ 246 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTK-KLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGS 246 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEETTTT-EEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETT
T ss_pred cCCCCcceEEEecccCCCCCEEEEEECCCC-eEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEEcCC
Confidence 234679999999 87668999997766 899998763221 122221 12 5699999995 67999999888
Q ss_pred CcEEEEeCC-CCceeEEEecCCCCccceeeeee--CCeEEEEeCCCCcEEEEccc
Q psy6570 138 RTIESINLN-GKDRFVVYHTEDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 138 ~~I~~~~~~-g~~~~~~~~~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~ 189 (713)
+.|.+++.+ |.....+... ...|.++++. +..||+++...+.|++++..
T Consensus 247 ~~i~~~d~~~g~~~~~~~~~---~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 247 SHIEVFGPDGGQPKMRIRCP---FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp TEEEEECTTCBSCSEEEECS---SSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CEEEEEcCCCCcEeEEEeCC---CCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 899999998 6554444322 3567788875 33599998888899998864
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-08 Score=103.42 Aligned_cols=186 Identities=8% Similarity=0.011 Sum_probs=127.0
Q ss_pred CcccCCceeEEEccCccc--EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceE-EEEEcCCCCCcce-E
Q psy6570 2 ASISSGNVTRVKREMNLK--TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKK-RTLLNTGLNEPYD-I 77 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~~--~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~-~~l~~~~~~~p~~-i 77 (713)
++...++|..+++.+.+. .+......| +|++++.++.||++.. ..+.|.++++++... ...+.. ...|.. |
T Consensus 15 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~---~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~ 89 (331)
T 3u4y_A 15 VEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSD---FCQTLVQIETQLEPPKVVAIQE-GQSSMADV 89 (331)
T ss_dssp EEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEES---TTCEEEEEECSSSSCEEEEEEE-CSSCCCCE
T ss_pred EecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeC---CCCeEEEEECCCCceeEEeccc-CCCCccce
Confidence 455678899999876432 223345556 9999998888999998 678999999976553 333323 367888 9
Q ss_pred EEcCCCCcEEEEccC-CCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCc-EEEEeCCCCceeE-E-
Q psy6570 78 ALEPLSGRMFWTELG-IKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKART-IESINLNGKDRFV-V- 153 (713)
Q Consensus 78 avD~~~~~ly~td~~-~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~-I~~~~~~g~~~~~-~- 153 (713)
+++|..++||.+... ....|.+.+++.......+. ....|.++++++++++||+++...+. |..++++...... .
T Consensus 90 ~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~ 168 (331)
T 3u4y_A 90 DITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG 168 (331)
T ss_dssp EECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred EECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC
Confidence 999988888844332 11279999987655444443 34568999999988899999987777 7766665422211 0
Q ss_pred EecCCCCccceeeeee--CCeEEEEeCCCCcEEEEcccCCCc
Q psy6570 154 YHTEDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKFGNSD 193 (713)
Q Consensus 154 ~~~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~ 193 (713)
.........|.++++. +.+||++....+.|..++...+..
T Consensus 169 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 169 QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 1100123457777765 456999998889999998765554
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-08 Score=100.46 Aligned_cols=166 Identities=8% Similarity=-0.002 Sum_probs=114.8
Q ss_pred CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCC-ceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCC
Q psy6570 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEG-RKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDG 104 (713)
Q Consensus 26 ~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G-~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG 104 (713)
..|+||++++. ++||++.... ....|.++++.. +....+.......+.+|+++ +++||++++..+ .|.+++.+.
T Consensus 21 ~f~~Gl~~~~d-g~Lyvstg~~-~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~-~v~viD~~t 95 (266)
T 2iwa_A 21 AFTQGLVYAEN-DTLFESTGLY-GRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN-IGFIYDRRT 95 (266)
T ss_dssp CCEEEEEECST-TEEEEEECST-TTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS-EEEEEETTT
T ss_pred CCcccEEEeCC-CeEEEECCCC-CCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC-EEEEEECCC
Confidence 35789999975 7999987410 357899999975 44444432333456678886 679999999877 999999874
Q ss_pred CCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCcee-EEEecC--CCCccceeeeeeCCeEEEEeCCCC
Q psy6570 105 KNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRF-VVYHTE--DNGYKPYKLEVFEDNLYFSTYRTN 181 (713)
Q Consensus 105 ~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~-~~~~~~--~~~~~p~~i~~~~~~ly~td~~~~ 181 (713)
.....-+... .|.|+.|.+++++||+++ ..++|+.+|.+..... .+.... ..+..|..+.+.+++||++.|..+
T Consensus 96 ~~v~~~i~~g--~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~ 172 (266)
T 2iwa_A 96 LSNIKNFTHQ--MKDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTD 172 (266)
T ss_dssp TEEEEEEECC--SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSS
T ss_pred CcEEEEEECC--CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCC
Confidence 3222222222 355555555689999999 6889999998774432 222211 112346677777889999999999
Q ss_pred cEEEEcccCCCcceeeec
Q psy6570 182 NILKINKFGNSDFNVLAN 199 (713)
Q Consensus 182 ~i~~~~~~~~~~~~~~~~ 199 (713)
.|.+++...+.....+..
T Consensus 173 ~V~vID~~tg~V~~~I~~ 190 (266)
T 2iwa_A 173 CIARISAKDGTLLGWILL 190 (266)
T ss_dssp EEEEEETTTCCEEEEEEC
T ss_pred eEEEEECCCCcEEEEEEC
Confidence 999999988776666643
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.7e-08 Score=101.97 Aligned_cols=179 Identities=11% Similarity=0.124 Sum_probs=126.1
Q ss_pred ccCCceeEEEccCcc--cEEecCCCCCce-EEEeccCCeEEEeecCCCCCC--eEEEEecCCceEEEEEcCCCCCcceEE
Q psy6570 4 ISSGNVTRVKREMNL--KTVLSNLHDPRG-VAVDWVGKNLYWTDAGGRSSN--NIMVSTLEGRKKRTLLNTGLNEPYDIA 78 (713)
Q Consensus 4 ~~~~~I~~~~~~~~~--~~~~~~~~~p~g-la~D~~~~~ly~td~~~~~~~--~I~~~~~~G~~~~~l~~~~~~~p~~ia 78 (713)
...++|+.+++.+.. ...+.....|.. +++++.++.||.++. ..+ .|.+.+++.......+.. ...|.+|+
T Consensus 59 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~ 134 (331)
T 3u4y_A 59 DFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTG---LNHPFNMQSYSFLKNKFISTIPI-PYDAVGIA 134 (331)
T ss_dssp STTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCC---SSSSCEEEEEETTTTEEEEEEEC-CTTEEEEE
T ss_pred CCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecC---CCCcccEEEEECCCCCeEEEEEC-CCCccceE
Confidence 346688889887654 333556677888 999999888995444 324 899999986655444433 36799999
Q ss_pred EcCCCCcEEEEccCCCCe-EEEEecCCCCcE-----EEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCce--
Q psy6570 79 LEPLSGRMFWTELGIKPR-ISGASIDGKNKF-----NLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDR-- 150 (713)
Q Consensus 79 vD~~~~~ly~td~~~~~~-I~~~~~dG~~~~-----~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~-- 150 (713)
++|.+++||+++.... . |.+.+++..... .++ .....|.++++++++++||++....+.|..++++....
T Consensus 135 ~spdg~~l~~~~~~~~-~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSA-NTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT 212 (331)
T ss_dssp ECTTSSCEEEEEETTT-TEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE
T ss_pred ECCCCCEEEEEecCCC-ceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc
Confidence 9998888999987756 5 676666543322 122 23456899999998888999999899999999865443
Q ss_pred -eEEEecCCCCccceeeeee--CCeEEEEeCCCCcEEEEcccCC
Q psy6570 151 -FVVYHTEDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKFGN 191 (713)
Q Consensus 151 -~~~~~~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~ 191 (713)
...+.. ...|.++++. +.+||++....+.|..++..++
T Consensus 213 ~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 213 LLNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp EEEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred eeeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 212222 2456666665 5679999887788888886544
|
| >1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A | Back alignment and structure |
|---|
Probab=98.96 E-value=4.1e-10 Score=103.14 Aligned_cols=76 Identities=30% Similarity=0.773 Sum_probs=49.0
Q ss_pred CEEEcCCCeee-CCCCCccCCCCcCCCCCCCCCcEeccCCCCccccCCCCCcCCCCc--------cCCCCCC---CCCCe
Q psy6570 395 GTCIATTQTCV-CPPGFTGDTCQQCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQ--------YSQCKNY---CVNGE 462 (713)
Q Consensus 395 ~~C~~~~~~C~-C~~g~~g~~C~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~C~--------~~~C~~~---~~~~~ 462 (713)
+.|...+++|. |.++|+|..|+ +|++||+|..+. .-.|... -..+.
T Consensus 68 ~~C~~~tG~C~~C~~g~~G~~Ce----------------------~C~~Gy~g~~~~~~~~~~C~~C~C~~~Gs~~~~~~ 125 (162)
T 1klo_A 68 GNCNRLTGECLKCIYNTAGFYCD----------------------RCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSS 125 (162)
T ss_dssp CCBCTTTCCBCCBCTTEETTTTC----------------------EECTTEEECTTCSSGGGSEEECCCCTTTBGGGCCC
T ss_pred CcccCCCCcccCCCCCCcCCCcC----------------------cCchhhcCCccccCCCCCCeeccCCCCCccCCCCC
Confidence 45655577884 99999888876 355666665544 1122221 01136
Q ss_pred eecCCCCCeecCCCCccCCCCCCccccCCCCCCcccCCCCccCCC
Q psy6570 463 CSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKK 507 (713)
Q Consensus 463 C~~~~~~~~C~C~~G~~g~~C~~~~C~~~~~~~~C~C~~G~~g~~ 507 (713)
|....| +|.|++||+|..|+. |.+||+|..
T Consensus 126 Cd~~tG--~C~C~~g~~G~~Cd~-------------C~~g~~g~~ 155 (162)
T 1klo_A 126 CNPVTG--QCQCLPHVSGRDCGT-------------CDPGYYNLQ 155 (162)
T ss_dssp CCTTTC--CCCBCTTEESTTCCE-------------ECTTCBCGG
T ss_pred CCCCCC--EeECCCCCcCCCCCC-------------CCCCcccCC
Confidence 765444 899999999999885 778888754
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=8.7e-08 Score=99.31 Aligned_cols=207 Identities=14% Similarity=0.080 Sum_probs=130.7
Q ss_pred cCCceeEEEcc-Cc---ccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCC--ceEE----EEEcCCCCCc
Q psy6570 5 SSGNVTRVKRE-MN---LKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEG--RKKR----TLLNTGLNEP 74 (713)
Q Consensus 5 ~~~~I~~~~~~-~~---~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G--~~~~----~l~~~~~~~p 74 (713)
..+.|..++++ +. ..........|.++++++.++.||+++. ..+.|.+++++. +... .+.......|
T Consensus 104 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 180 (343)
T 1ri6_A 104 NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL---KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGP 180 (343)
T ss_dssp TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEEEECSTTCCE
T ss_pred CCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecC---CCCEEEEEEecCCCceeeecccccccCCCCCc
Confidence 35567777763 11 1122455667999999999889999986 568899988764 3222 1222223579
Q ss_pred ceEEEcCCCCcEEEEccCCCCeEEEEecCC--CCcEE--EEe-C--C---CCCCeeEEEeCCCCeEEEEcCCCCcEEEEe
Q psy6570 75 YDIALEPLSGRMFWTELGIKPRISGASIDG--KNKFN--LVD-N--N---IQWPTGITIDYPSQRLYWADPKARTIESIN 144 (713)
Q Consensus 75 ~~iavD~~~~~ly~td~~~~~~I~~~~~dG--~~~~~--l~~-~--~---~~~p~glavd~~~~~LY~~d~~~~~I~~~~ 144 (713)
.+|+++|..++||+++.... .|...+++. ...+. .+. . . ...|.+|++++.+++||++....+.|..++
T Consensus 181 ~~~~~~pdg~~l~~~~~~~~-~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d 259 (343)
T 1ri6_A 181 RHMVFHPNEQYAYCVNELNS-SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFS 259 (343)
T ss_dssp EEEEECTTSSEEEEEETTTT-EEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ceEEECCCCCEEEEEeCCCC-EEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEE
Confidence 99999998888999986655 888888864 22211 111 1 1 235668999998889999998888898888
Q ss_pred CC--CCceeEEEecCCCCccceeeeee--CCeEEEEeCCCCcEEEE--cccCCCcceeeec-cccccccEEEEeecccc
Q psy6570 145 LN--GKDRFVVYHTEDNGYKPYKLEVF--EDNLYFSTYRTNNILKI--NKFGNSDFNVLAN-NLNRASDVLILQENKQA 216 (713)
Q Consensus 145 ~~--g~~~~~~~~~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~--~~~~~~~~~~~~~-~~~~~~~i~v~~~~~q~ 216 (713)
++ +...+.+..... ...|.++++. +.+||++....+.|..+ +..++....+... ....|..+.+....+++
T Consensus 260 ~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~~~ 337 (343)
T 1ri6_A 260 VSEDGSVLSKEGFQPT-ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEGGS 337 (343)
T ss_dssp ECTTSCCEEEEEEEEC-SSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC---
T ss_pred EcCCCCceEEeeeecC-CCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEEcccCCc
Confidence 87 433333332221 2236667765 56799988766776665 4433322222111 23678888888776664
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.96 E-value=6.2e-08 Score=101.84 Aligned_cols=160 Identities=13% Similarity=0.025 Sum_probs=108.4
Q ss_pred CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCce-------E------EEEEcCCCCCcceEEEcCCCCcEEEEccCC
Q psy6570 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK-------K------RTLLNTGLNEPYDIALEPLSGRMFWTELGI 93 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~-------~------~~l~~~~~~~p~~iavD~~~~~ly~td~~~ 93 (713)
.|.++++++.++.||+++. ..+.|.+++++... . ..+.......|.+|+++|..++||+++...
T Consensus 156 ~~~~~~~spdg~~l~~~~~---~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 232 (361)
T 3scy_A 156 HLHCVRITPDGKYLLADDL---GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG 232 (361)
T ss_dssp CEEEEEECTTSSEEEEEET---TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred cceEEEECCCCCEEEEEeC---CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC
Confidence 3478999998888999998 67788888766422 1 122223346799999999877899998665
Q ss_pred CCeEEEEecCCCCcEEEE--e---CCCCCCeeEEEeCCCCeEEEEcCC-CCcEEEEeCC--CCceeEEEecCCCCcccee
Q psy6570 94 KPRISGASIDGKNKFNLV--D---NNIQWPTGITIDYPSQRLYWADPK-ARTIESINLN--GKDRFVVYHTEDNGYKPYK 165 (713)
Q Consensus 94 ~~~I~~~~~dG~~~~~l~--~---~~~~~p~glavd~~~~~LY~~d~~-~~~I~~~~~~--g~~~~~~~~~~~~~~~p~~ 165 (713)
. .|.+.+++....+.+. . .....|.+|++++++++||+++.. .++|..++++ ....+.+..... ...|.+
T Consensus 233 ~-~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~ 310 (361)
T 3scy_A 233 G-TVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRN 310 (361)
T ss_dssp C-EEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCE
T ss_pred C-eEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCce
Confidence 5 7888887643322222 1 123567899999999999999988 7888887765 223333332222 345667
Q ss_pred eeee--CCeEEEEeCCCCcEEE--EcccCC
Q psy6570 166 LEVF--EDNLYFSTYRTNNILK--INKFGN 191 (713)
Q Consensus 166 i~~~--~~~ly~td~~~~~i~~--~~~~~~ 191 (713)
|++. +.+||+++...+.|.. ++..++
T Consensus 311 ~~~spdg~~l~~~~~~~~~v~v~~~d~~~g 340 (361)
T 3scy_A 311 FIITPNGKYLLVACRDTNVIQIFERDQATG 340 (361)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEEECTTTC
T ss_pred EEECCCCCEEEEEECCCCCEEEEEEECCCC
Confidence 7665 5679999877777766 454333
|
| >1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A | Back alignment and structure |
|---|
Probab=98.95 E-value=5.2e-10 Score=89.74 Aligned_cols=68 Identities=31% Similarity=0.803 Sum_probs=58.7
Q ss_pred CCCCCC-CCCCCCcEEeecCCCceeeCCCCCc--CCCCCcCCCCCCC--CCCCCCCCeEecCCCCcceeecCCCcccCC
Q psy6570 552 ANKCTP-NYCSNNGTCVLIEGKPSCKCLPPYS--GKQCTEREDSPSC--HNYCDNAGLCSYSKQGKPVCTCVNGWSGIT 625 (713)
Q Consensus 552 ~~~C~~-~~C~~~~~C~~~~g~~~C~C~~G~~--G~~C~~~~~~~~C--~~~C~~~g~C~~~~~g~~~C~C~~G~~G~~ 625 (713)
+++|.. ++|.+ ++|+++.++|+|.|++||+ |..|+++ ++| .++|.+ ++|++.. ++|+|.|++||+|..
T Consensus 5 ideC~~~~~C~~-g~C~n~~g~y~C~C~~Gy~~~g~~C~di---deC~~~~~C~~-~~C~n~~-g~y~C~C~~G~~g~~ 77 (82)
T 1emn_A 5 MDECKEPDVCKH-GQCINTDGSYRCECPFGYILAGNECVDT---DECSVGNPCGN-GTCKNVI-GGFECTCEEGFEPGP 77 (82)
T ss_dssp CCSSSSTTSCSS-SEECCCSSCCCEECCTTEEEETTEEEEC---CGGGTCCTTSS-SCEEECS-SSEEECCSSSSCCCS
T ss_pred cccCCCCCCcCC-CEEEecCCCEEEECCCCeECCCCccCCc---ccccCCCCCCC-CEeECCC-CCEEeECCCCeEeCC
Confidence 678885 78974 8999999999999999997 8999765 888 467975 7999887 899999999999753
|
| >1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* | Back alignment and structure |
|---|
Probab=98.95 E-value=4.2e-10 Score=101.15 Aligned_cols=74 Identities=28% Similarity=0.759 Sum_probs=62.9
Q ss_pred CCCCCCCCCCCCcEEeecCCCceeeCCCCCcCCCCCcCCCCCCCC---CCCCCCCeE-ecCCCCcceeecCCCcc----c
Q psy6570 552 ANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCH---NYCDNAGLC-SYSKQGKPVCTCVNGWS----G 623 (713)
Q Consensus 552 ~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~~~C~---~~C~~~g~C-~~~~~g~~~C~C~~G~~----G 623 (713)
+++|.+++|.++|+|++..++|+|.|++||+|..|++. ++|. ..|.+ +| .+.. |+|.|.|++||+ |
T Consensus 48 ideC~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~~---deC~~~~~~C~~--~C~~n~~-g~y~C~C~~Gy~l~~dG 121 (146)
T 1x7a_L 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELD---ATCNIKNGRCKQ--FCKTGAD-SKVLCSCTTGYRLAPDQ 121 (146)
T ss_dssp --CCSSCSSCTTCEEEECSSCEEEECCSSEESTTTCEE---CCTTSGGGSCSS--BCCCCSS-SCCCCBCCTTEEECTTS
T ss_pred cCcCCCCCCCCCCEeECCCCCEEEecCCCCcCCcCCCC---ccccCCCCCCcC--CCCCCCC-CCEEeEcCCCcEeCCCC
Confidence 67899999999999999999999999999999999886 7783 35765 89 7765 899999999999 8
Q ss_pred CCCCcCCC
Q psy6570 624 ITCSERVS 631 (713)
Q Consensus 624 ~~C~~~~~ 631 (713)
..|+++++
T Consensus 122 ~~C~~~~~ 129 (146)
T 1x7a_L 122 KSCKPAVP 129 (146)
T ss_dssp SSEEECSS
T ss_pred CcCCCCCC
Confidence 88887654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-07 Score=99.19 Aligned_cols=156 Identities=15% Similarity=0.137 Sum_probs=105.0
Q ss_pred CCceEEEeccCCeEEEeecCCCCCCeEEEEecC--CceEEE--EEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEec
Q psy6570 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE--GRKKRT--LLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASI 102 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~--G~~~~~--l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~ 102 (713)
.|.++++++.++ ||+++. ..+.|.+++++ |+.... +.......|.+|+++|..++||+++.... .|.+.++
T Consensus 142 ~~~~~~~spdg~-l~v~~~---~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~-~v~v~~~ 216 (347)
T 3hfq_A 142 HIHYTDLTPDNR-LAVIDL---GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSS-QIASLKY 216 (347)
T ss_dssp CEEEEEECTTSC-EEEEET---TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT-EEEEEEE
T ss_pred CceEEEECCCCc-EEEEeC---CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCC-EEEEEEe
Confidence 467899998766 999998 67889888876 432221 12222357999999997777999887666 7777777
Q ss_pred CC-CCcEE-E--EeCC------CCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCC-ceeEEEecCCCCccceeeeee--
Q psy6570 103 DG-KNKFN-L--VDNN------IQWPTGITIDYPSQRLYWADPKARTIESINLNGK-DRFVVYHTEDNGYKPYKLEVF-- 169 (713)
Q Consensus 103 dG-~~~~~-l--~~~~------~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~-~~~~~~~~~~~~~~p~~i~~~-- 169 (713)
+. +.... + +... ...|.+|++++++++||+++...++|..++++.. ..+.+.........|.+|++.
T Consensus 217 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spd 296 (347)
T 3hfq_A 217 DTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPT 296 (347)
T ss_dssp ETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTT
T ss_pred cCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCC
Confidence 64 12211 1 1111 1358889999998899999988888888887632 223332222223457777765
Q ss_pred CCeEEEEeCCCCcEEEEc
Q psy6570 170 EDNLYFSTYRTNNILKIN 187 (713)
Q Consensus 170 ~~~ly~td~~~~~i~~~~ 187 (713)
+.+||+++...+.|..++
T Consensus 297 g~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 297 EAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp SSEEEEEETTTTEEEEEE
T ss_pred CCEEEEEEcCCCcEEEEE
Confidence 567999988777776663
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.89 E-value=9.8e-08 Score=99.63 Aligned_cols=179 Identities=13% Similarity=0.085 Sum_probs=116.5
Q ss_pred CCceeEEEccCcc-cEE---ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecC--CceEEE--EEcCC-------
Q psy6570 6 SGNVTRVKREMNL-KTV---LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE--GRKKRT--LLNTG------- 70 (713)
Q Consensus 6 ~~~I~~~~~~~~~-~~~---~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~--G~~~~~--l~~~~------- 70 (713)
++.|+.+++++.. +.+ ......|.+|++++.++.||+++. ..+.|.+++++ |+...+ +...+
T Consensus 62 ~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~---~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~ 138 (347)
T 3hfq_A 62 EGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANY---HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQ 138 (347)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEET---TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTC
T ss_pred CceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeC---CCCEEEEEEeCCCCCeeecceeecCCCCCCccc
Confidence 4567777775433 222 235678999999999889999987 56777777764 333221 11111
Q ss_pred -CCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCc-EEEE---eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeC
Q psy6570 71 -LNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNK-FNLV---DNNIQWPTGITIDYPSQRLYWADPKARTIESINL 145 (713)
Q Consensus 71 -~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~-~~l~---~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~ 145 (713)
...|.+++++|..+ ||+++.+.. +|.+.+++.... ..+. ......|.+|++++++++||+++...++|..+++
T Consensus 139 ~~~~~~~~~~spdg~-l~v~~~~~~-~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~ 216 (347)
T 3hfq_A 139 DGSHIHYTDLTPDNR-LAVIDLGSD-KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKY 216 (347)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTT-EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred cCCCceEEEECCCCc-EEEEeCCCC-EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 13477899998655 999998766 888888772222 2221 1223478999999988889999988888888877
Q ss_pred CC--CceeEEEecCC------CCccceeeeee--CCeEEEEeCCCCcEEEEccc
Q psy6570 146 NG--KDRFVVYHTED------NGYKPYKLEVF--EDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 146 ~g--~~~~~~~~~~~------~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~ 189 (713)
+. .....+..... ....|.++++. +.+||+++...+.|..++..
T Consensus 217 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 217 DTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp ETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred cCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 64 22222221111 01346666665 55799998888888777654
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.6e-07 Score=99.54 Aligned_cols=183 Identities=19% Similarity=0.278 Sum_probs=134.3
Q ss_pred CcccCCceeEEEccCccc-EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEc
Q psy6570 2 ASISSGNVTRVKREMNLK-TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~~-~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD 80 (713)
+...++.|..+++.+.+. ..+.....|.++++.+.++.||++.. ..+.|.+.++........+... ..|.+|+++
T Consensus 7 s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~d~~i~v~d~~~~~~~~~~~~~-~~v~~~~~s 82 (391)
T 1l0q_A 7 ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANA---HSNDVSIIDTATNNVIATVPAG-SSPQGVAVS 82 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEG---GGTEEEEEETTTTEEEEEEECS-SSEEEEEEC
T ss_pred EcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECC---CCCeEEEEECCCCeEEEEEECC-CCccceEEC
Confidence 345678899999886542 23455567899999998888999987 6789999998655444444333 489999999
Q ss_pred CCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCC
Q psy6570 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNG 160 (713)
Q Consensus 81 ~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 160 (713)
|.+++||++..... .|.+.++........+. ....+.++++++.+++||++....+.|+.+++........... .
T Consensus 83 pdg~~l~~~~~~~~-~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~ 157 (391)
T 1l0q_A 83 PDGKQVYVTNMASS-TLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV---G 157 (391)
T ss_dssp TTSSEEEEEETTTT-EEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---C
T ss_pred CCCCEEEEEECCCC-EEEEEECCCCeEEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec---C
Confidence 98888999886555 89999988655544444 3446899999998889999998889999999876544433333 2
Q ss_pred ccceeeeee--CCeEEEEeCCCCcEEEEcccCCCc
Q psy6570 161 YKPYKLEVF--EDNLYFSTYRTNNILKINKFGNSD 193 (713)
Q Consensus 161 ~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~ 193 (713)
..|..+++. +.+||++....+.|+.++...+..
T Consensus 158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~ 192 (391)
T 1l0q_A 158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV 192 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE
Confidence 345666654 557888888888888888765543
|
| >2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-09 Score=104.44 Aligned_cols=97 Identities=28% Similarity=0.644 Sum_probs=75.3
Q ss_pred CCCCCCCcEEeecCCCceeeCCCCCcCCCCCcCCCC-------CCC-----CCCCCCCCeEecCCCCcceeecCCC----
Q psy6570 557 PNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDS-------PSC-----HNYCDNAGLCSYSKQGKPVCTCVNG---- 620 (713)
Q Consensus 557 ~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~-------~~C-----~~~C~~~g~C~~~~~g~~~C~C~~G---- 620 (713)
+..|+++|+|+. .+|.|.+||+|..|+..... ..| ..+|+++|+|.. ++|.|++|
T Consensus 95 ~~~Csg~G~C~~----g~C~C~~G~~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Csg~G~C~~-----g~C~C~~gw~~~ 165 (217)
T 2p28_B 95 RSLCHGKGFLEC----GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC-----GQCLCHTSDVPG 165 (217)
T ss_dssp -CTTTTSEEEET----TEEEECTTEESTTSCEECCCCC-GGGGGGGBSSTTSCBGGGTEEEET-----TEEEECCCCSTT
T ss_pred CCccCCCceEEC----CEEECCCCccCCcccccCcccccccCCCcCCCCCCCCCCCCCCEEeC-----CceECCCCCCCc
Confidence 346889999983 58999999999999843110 135 256889999984 36999999
Q ss_pred --cccCCCCc-CCCCCC----CCCCC--CeecCCCCccCCCCCceeeCCCCcccCCCCccc
Q psy6570 621 --WSGITCSE-RVSCAH----FCFNG--GTCREQNYSLDPDLKPICICPRGYAGVRCQTLV 672 (713)
Q Consensus 621 --~~G~~C~~-~~~C~~----~C~~~--~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~~~ 672 (713)
|+|..|+. ...|.. +|.++ |+|.. ++|.|.+||+|..|+.+.
T Consensus 166 ~~~~G~~Ce~~~~~C~~~~g~~C~~~~~G~C~~----------g~C~C~~G~~G~~C~~~~ 216 (217)
T 2p28_B 166 KLIYGQYCECDTINCERYNGQVCGGPGRGLCFC----------GKCRCHPGFEGSACQHHH 216 (217)
T ss_dssp CCEESTTSCEESSCSCEETTEETTCTTTEEEET----------TEEEECTTEESTTSCEEC
T ss_pred ccEECCCcccCCccCCCCCCCCCCCCCCcEEeC----------CeeECCCCCccCCcCCCC
Confidence 69999984 356863 58887 99986 699999999999998653
|
| >1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-09 Score=100.36 Aligned_cols=55 Identities=33% Similarity=0.895 Sum_probs=43.2
Q ss_pred eec-CCCCccCCCCCCccccCCCCCCcccCCCCccCCCCC--------CCCCCCCc------EEcCCCCCeeccCCCCCC
Q psy6570 471 KCM-CSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCD--------TCTCLNGG------TCIPNSKNNVCKCPSQYT 535 (713)
Q Consensus 471 ~C~-C~~G~~g~~C~~~~C~~~~~~~~C~C~~G~~g~~C~--------~~~C~~~g------~C~~~~~~~~C~C~~g~~ 535 (713)
+|. |.++|+|..|+. |++||+|+.+. .+.|.+.+ .|... +++|.|++||+
T Consensus 76 ~C~~C~~g~~G~~Ce~-------------C~~Gy~g~~~~~~~~~~C~~C~C~~~Gs~~~~~~Cd~~--tG~C~C~~g~~ 140 (162)
T 1klo_A 76 ECLKCIYNTAGFYCDR-------------CKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPV--TGQCQCLPHVS 140 (162)
T ss_dssp CBCCBCTTEETTTTCE-------------ECTTEEECTTCSSGGGSEEECCCCTTTBGGGCCCCCTT--TCCCCBCTTEE
T ss_pred cccCCCCCCcCCCcCc-------------CchhhcCCccccCCCCCCeeccCCCCCccCCCCCCCCC--CCEeECCCCCc
Confidence 784 999999999885 88899886554 56777654 67654 57999999999
Q ss_pred CCCCc
Q psy6570 536 GRRCE 540 (713)
Q Consensus 536 G~~C~ 540 (713)
|.+|+
T Consensus 141 G~~Cd 145 (162)
T 1klo_A 141 GRDCG 145 (162)
T ss_dssp STTCC
T ss_pred CCCCC
Confidence 98875
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.86 E-value=8.3e-07 Score=86.12 Aligned_cols=173 Identities=11% Similarity=0.035 Sum_probs=115.2
Q ss_pred CCceeEEEccCcccEE-ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCC
Q psy6570 6 SGNVTRVKREMNLKTV-LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSG 84 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~-~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~ 84 (713)
..+|.++++.+.+.+. +.....+.|..+...+++||++.+ ..++|+++|++......-+..+ ..+.+|+-| ++
T Consensus 42 ~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw---~~~~v~v~D~~tl~~~~ti~~~-~~Gwglt~d--g~ 115 (243)
T 3mbr_X 42 RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTW---RNHEGFVYDLATLTPRARFRYP-GEGWALTSD--DS 115 (243)
T ss_dssp SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEES---SSSEEEEEETTTTEEEEEEECS-SCCCEEEEC--SS
T ss_pred CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEe---eCCEEEEEECCcCcEEEEEeCC-CCceEEeeC--CC
Confidence 3578999988754322 333345544444445799999999 7899999998764433333333 366777765 68
Q ss_pred cEEEEccCCCCeEEEEecCCCCcEEEEeC-----CCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecC--
Q psy6570 85 RMFWTELGIKPRISGASIDGKNKFNLVDN-----NIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTE-- 157 (713)
Q Consensus 85 ~ly~td~~~~~~I~~~~~dG~~~~~l~~~-----~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~-- 157 (713)
+||++| +.. +|+.++........-+.. .+..++.|... +++||...+.++.|.++|+....+...+...
T Consensus 116 ~L~vSd-gs~-~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l 191 (243)
T 3mbr_X 116 HLYMSD-GTA-VIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQAL 191 (243)
T ss_dssp CEEEEC-SSS-EEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGG
T ss_pred EEEEEC-CCC-eEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcC
Confidence 999999 455 899998875443332221 23455666665 8899999999999999998654443333211
Q ss_pred ---------CCCccceeeeee--CCeEEEEeCCCCcEEEEcc
Q psy6570 158 ---------DNGYKPYKLEVF--EDNLYFSTYRTNNILKINK 188 (713)
Q Consensus 158 ---------~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~ 188 (713)
....-+.||+++ .++||+|...=.+++++..
T Consensus 192 ~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~ 233 (243)
T 3mbr_X 192 VPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRL 233 (243)
T ss_dssp STTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred ccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEE
Confidence 112356788887 6799999866677777764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.85 E-value=7.1e-08 Score=102.77 Aligned_cols=186 Identities=13% Similarity=0.060 Sum_probs=118.6
Q ss_pred CceeEEEccCcccEE-ecCCCCCceEEEeccCCeEEEeecCC------CCCCeEEEEecCCceE-EEEEcC-C-----CC
Q psy6570 7 GNVTRVKREMNLKTV-LSNLHDPRGVAVDWVGKNLYWTDAGG------RSSNNIMVSTLEGRKK-RTLLNT-G-----LN 72 (713)
Q Consensus 7 ~~I~~~~~~~~~~~~-~~~~~~p~gla~D~~~~~ly~td~~~------~~~~~I~~~~~~G~~~-~~l~~~-~-----~~ 72 (713)
+.|+.+|+.+.+.+- +.....| +|++++.+++||+++... ...+.|.++|+..... ..+... . ..
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~ 177 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGT 177 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCC
Confidence 789999988754322 4445678 999999999999998510 0245799999876443 333222 0 35
Q ss_pred CcceEEEcCCCCcEEEEccC-CCCeEEEEecCCCCcE-EE---------------------------EeC----------
Q psy6570 73 EPYDIALEPLSGRMFWTELG-IKPRISGASIDGKNKF-NL---------------------------VDN---------- 113 (713)
Q Consensus 73 ~p~~iavD~~~~~ly~td~~-~~~~I~~~~~dG~~~~-~l---------------------------~~~---------- 113 (713)
.|.+|+++|..++||+++.. .+ .|.++++...... ++ +..
T Consensus 178 ~P~~~~~spDGk~lyV~n~~~~~-~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~ 256 (426)
T 3c75_H 178 YQWMNALTPDNKNLLFYQFSPAP-AVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT 256 (426)
T ss_dssp CGGGSEECTTSSEEEEEECSSSC-EEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC
T ss_pred CcceEEEcCCCCEEEEEecCCCC-eEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee
Confidence 79999999999999999764 33 5555544321110 00 000
Q ss_pred ----------------------------------------------C--C---------CCCee---EEEeCCCCeEEEE
Q psy6570 114 ----------------------------------------------N--I---------QWPTG---ITIDYPSQRLYWA 133 (713)
Q Consensus 114 ----------------------------------------------~--~---------~~p~g---lavd~~~~~LY~~ 133 (713)
. + ..|.+ +++++++++||++
T Consensus 257 ~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa 336 (426)
T 3c75_H 257 EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLL 336 (426)
T ss_dssp CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEE
T ss_pred eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEE
Confidence 0 0 01333 7777777888887
Q ss_pred cC---------CCCcEEEEeCCCCceeEEEecCCCCccceeeeee--CC-eEEEEeCCCCcEEEEcccCCCcceee
Q psy6570 134 DP---------KARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF--ED-NLYFSTYRTNNILKINKFGNSDFNVL 197 (713)
Q Consensus 134 d~---------~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~--~~-~ly~td~~~~~i~~~~~~~~~~~~~~ 197 (713)
.. ..+.|..+|+....+..-+.. ...|.+|++. +. +||++.+..+.|..++.........+
T Consensus 337 ~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v---g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 337 VDQRDEWKHKAASRFVVVLNAETGERINKIEL---GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ecccccccccCCCCEEEEEECCCCeEEEEEEC---CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 53 134688888765443222221 2357777765 56 79999988999999998877666555
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.84 E-value=4.9e-07 Score=88.47 Aligned_cols=168 Identities=11% Similarity=0.032 Sum_probs=111.9
Q ss_pred ecCCCCC--ceEEEeccCCeEEEeecCCCCCCeEEEEecCCce-EEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEE
Q psy6570 22 LSNLHDP--RGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK-KRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRIS 98 (713)
Q Consensus 22 ~~~~~~p--~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~-~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~ 98 (713)
.+....| +||+++ ++.||++.... ....|.+++++... ...+....-....||+++ +++||+++|..+ +++
T Consensus 37 ~phd~~~ftqGL~~~--~~~LyestG~~-g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~-~v~ 110 (262)
T 3nol_A 37 YPHDTKAFTEGFFYR--NGYFYESTGLN-GRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNG-LGF 110 (262)
T ss_dssp EECCTTCEEEEEEEE--TTEEEEEEEET-TEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSS-EEE
T ss_pred ecCCCCcccceEEEE--CCEEEEECCCC-CCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCC-EEE
Confidence 3445566 999998 57999988610 13489999997544 444432222223557775 689999999877 999
Q ss_pred EEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCc-eeEEEecC--CCCccceeeeeeCCeEEE
Q psy6570 99 GASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKD-RFVVYHTE--DNGYKPYKLEVFEDNLYF 175 (713)
Q Consensus 99 ~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~-~~~~~~~~--~~~~~p~~i~~~~~~ly~ 175 (713)
+++++......-+... ..+.||+.| +++||++|. +++|+.+|..... ...+.... ..+..+..|.+.+++||+
T Consensus 111 v~D~~t~~~~~ti~~~-~eG~glt~d--g~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lya 186 (262)
T 3nol_A 111 VWNIRNLRQVRSFNYD-GEGWGLTHN--DQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFA 186 (262)
T ss_dssp EEETTTCCEEEEEECS-SCCCCEEEC--SSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEE
T ss_pred EEECccCcEEEEEECC-CCceEEecC--CCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEE
Confidence 9998754443333322 245666665 789999994 7899999987533 33332211 112223346667889999
Q ss_pred EeCCCCcEEEEcccCCCcceeeec
Q psy6570 176 STYRTNNILKINKFGNSDFNVLAN 199 (713)
Q Consensus 176 td~~~~~i~~~~~~~~~~~~~~~~ 199 (713)
..|..+.|.+|++..+.....+..
T Consensus 187 n~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 187 NVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp EETTSSEEEEECTTTCBEEEEEEC
T ss_pred EEccCCeEEEEECCCCcEEEEEEC
Confidence 999999999999988776666544
|
| >2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-09 Score=96.44 Aligned_cols=77 Identities=34% Similarity=0.869 Sum_probs=62.0
Q ss_pred CCCCCCCCCCCCcEEeecCCCceeeCCCCCcCCCCCc-CCCCCCCCCCCCCCC---eEecCCCC-cceeecCCCcc----
Q psy6570 552 ANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTE-REDSPSCHNYCDNAG---LCSYSKQG-KPVCTCVNGWS---- 622 (713)
Q Consensus 552 ~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~-~~~~~~C~~~C~~~g---~C~~~~~g-~~~C~C~~G~~---- 622 (713)
+++|.+++|.++|+|+++.++|+|.|++||+|..|+. ..+...| .|.+++ +|++.. + +|.|.|++||+
T Consensus 47 id~C~~~pC~n~g~C~~~~g~y~C~C~~G~~G~~C~~~~~~c~~c--~~~~~~C~~~C~~~~-g~~y~C~C~~Gy~l~~d 123 (142)
T 2c4f_L 47 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLIC--VNENGGCEQYCSDHT-GTKRSCRCHEGYSLLAD 123 (142)
T ss_dssp CCGGGGCCCCTTCEEEEETTEEEEECCTTEESTTSCEEGGGCCST--TTGGGGCSSEEECCT-TSCCEEECCTTEEECTT
T ss_pred cCcCcCCCcCCCCEEeCCCCCEEeeCCCCccCCccccCccccccc--cCCCCCccCEeECCC-CCCEEEECCCCceECCC
Confidence 6789999999999999999999999999999999986 2222223 233333 899877 7 99999999999
Q ss_pred cCCCCcCCC
Q psy6570 623 GITCSERVS 631 (713)
Q Consensus 623 G~~C~~~~~ 631 (713)
|..|+++++
T Consensus 124 G~~C~~~~e 132 (142)
T 2c4f_L 124 GVSCTPTVE 132 (142)
T ss_dssp SSCEEESSS
T ss_pred CCCCCCCCc
Confidence 888887655
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=98.82 E-value=4.5e-07 Score=96.10 Aligned_cols=184 Identities=21% Similarity=0.228 Sum_probs=132.2
Q ss_pred cCCceeEEEccCccc-EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCC
Q psy6570 5 SSGNVTRVKREMNLK-TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLS 83 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~-~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~ 83 (713)
.++.|..+++.+... ..+.....|.++++++.++.||++.. ..+.|.+.++........+.. ...|.+|++++.+
T Consensus 52 ~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg 127 (391)
T 1l0q_A 52 HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDG 127 (391)
T ss_dssp GGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTS
T ss_pred CCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCC
Confidence 467788888765432 22444458899999999889999987 668999999987655544433 3578999999888
Q ss_pred CcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccc
Q psy6570 84 GRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKP 163 (713)
Q Consensus 84 ~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p 163 (713)
++||++..... .|.+.++........+. ....|..+++++.+++||++....+.|+.+++........... ...+
T Consensus 128 ~~l~~~~~~~~-~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~ 202 (391)
T 1l0q_A 128 KKLYVTNNGDK-TVSVINTVTKAVINTVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAP 202 (391)
T ss_dssp SEEEEEETTTT-EEEEEETTTTEEEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEE
T ss_pred CEEEEEeCCCC-EEEEEECCCCcEEEEEe-cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec---CCCc
Confidence 88989887666 89999987654444443 2356899999998889999988889999999876554433332 2355
Q ss_pred eeeeee--CCeEEEEeC--CCCcEEEEcccCCCcceee
Q psy6570 164 YKLEVF--EDNLYFSTY--RTNNILKINKFGNSDFNVL 197 (713)
Q Consensus 164 ~~i~~~--~~~ly~td~--~~~~i~~~~~~~~~~~~~~ 197 (713)
.++++. +.+||++.. ..+.|+.++...+.....+
T Consensus 203 ~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~ 240 (391)
T 1l0q_A 203 SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI 240 (391)
T ss_dssp EEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred cceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE
Confidence 666654 557888775 6778888887655444333
|
| >1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=2e-09 Score=87.26 Aligned_cols=67 Identities=30% Similarity=0.746 Sum_probs=55.9
Q ss_pred CCCCCCCC--CCCCcEEeecCCCceeeCCCCCc-----CCCCCcCCCCCCC-CC--CCCCCCeEecCCCCcceeecCCCc
Q psy6570 552 ANKCTPNY--CSNNGTCVLIEGKPSCKCLPPYS-----GKQCTEREDSPSC-HN--YCDNAGLCSYSKQGKPVCTCVNGW 621 (713)
Q Consensus 552 ~~~C~~~~--C~~~~~C~~~~g~~~C~C~~G~~-----G~~C~~~~~~~~C-~~--~C~~~g~C~~~~~g~~~C~C~~G~ 621 (713)
+++|..++ |. +++|+++.++|+|.|++||+ |..|+++ ++| .. .|. +++|++.. |+|.|.|++||
T Consensus 3 ideC~~~~~~C~-~g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~di---deC~~~~~~C~-~~~C~n~~-g~y~C~C~~G~ 76 (86)
T 1lmj_A 3 IDECRISPDLCG-RGQCVNTPGDFECKCDEGYESGFMMMKNCMDI---DECQRDPLLCR-GGVCHNTE-GSYRCECPPGH 76 (86)
T ss_dssp CCTTTTCSSTTT-TSCEEEETTEEEECCCSSEEECTTTSSSEEEC---CHHHHCSSTTT-TSEEEEET-TEEEEESCTTS
T ss_pred cccccCCCCCCC-CCEEECCCCCEEeeCCCCcCccCCCCCccCCc---ccccCCCCcCC-CCEeEcCC-CCEEEECcCCc
Confidence 67888655 95 46999999999999999998 7789865 888 33 476 58999887 99999999999
Q ss_pred ccC
Q psy6570 622 SGI 624 (713)
Q Consensus 622 ~G~ 624 (713)
++.
T Consensus 77 ~~~ 79 (86)
T 1lmj_A 77 QLS 79 (86)
T ss_dssp CCC
T ss_pred ccC
Confidence 875
|
| >1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* | Back alignment and structure |
|---|
Probab=98.80 E-value=1e-09 Score=102.62 Aligned_cols=81 Identities=28% Similarity=0.719 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCCcEEeecCCCceeeCCCCCcCCCCCcCCCC-CCCC---CCCCCCCeEecCCCCcceeecCCCcc----c
Q psy6570 552 ANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDS-PSCH---NYCDNAGLCSYSKQGKPVCTCVNGWS----G 623 (713)
Q Consensus 552 ~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~-~~C~---~~C~~~g~C~~~~~g~~~C~C~~G~~----G 623 (713)
+++|.+++|.++|+|++..++|+|.|++||+|..|+.. + ++|. ..|.+ .|.+.. |+|.|.|++||+ |
T Consensus 42 ideC~~~pC~ngg~C~n~~g~y~C~C~~Gf~G~~Ce~~--i~deC~~~~~~C~~--~C~n~~-gsy~C~C~~Gy~l~~dG 116 (195)
T 1nfu_B 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF--TRKLCSLDNGDCDQ--FCHEEQ-NSVVCSCARGYTLADNG 116 (195)
T ss_dssp -----------------------------------------CCGGGTGGGGCSS--EEEEET-TEEEEECCTTEEECTTS
T ss_pred CcccCCCCCCCCCEeECCCCCeeEeCCCCceecccccc--ccccccCCCCCCCC--EeECCC-CCeEEECCCCceeCCCC
Confidence 67899999999999999999999999999999999863 2 5672 45765 899877 899999999999 8
Q ss_pred CCCCcCCCCCCCCCCC
Q psy6570 624 ITCSERVSCAHFCFNG 639 (713)
Q Consensus 624 ~~C~~~~~C~~~C~~~ 639 (713)
..|++..+ .+|.+.
T Consensus 117 ~~C~~~~~--~PC~~~ 130 (195)
T 1nfu_B 117 KACIPTGP--YPCGKQ 130 (195)
T ss_dssp SCEEESSS--SCTTCC
T ss_pred CccccCCC--CCCCCC
Confidence 88987542 455543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.80 E-value=8.8e-07 Score=86.64 Aligned_cols=169 Identities=7% Similarity=-0.005 Sum_probs=113.4
Q ss_pred CceeEEEccCcccEE-ecCCCCC--ceEEEeccCCeEEEeecCCCCCCeEEEEecCCce-EEEEEcCCCCCcceEEEcCC
Q psy6570 7 GNVTRVKREMNLKTV-LSNLHDP--RGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK-KRTLLNTGLNEPYDIALEPL 82 (713)
Q Consensus 7 ~~I~~~~~~~~~~~~-~~~~~~p--~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~-~~~l~~~~~~~p~~iavD~~ 82 (713)
.+|.++++.+.+.+. +.....+ .||+++ +++||++.+ ..++++++|++... ...+- .+ ..+.+|+.|
T Consensus 65 S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw---~~~~v~v~D~~t~~~~~ti~-~~-~eG~glt~d-- 135 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTW---KNGLGFVWNIRNLRQVRSFN-YD-GEGWGLTHN-- 135 (262)
T ss_dssp EEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEES---SSSEEEEEETTTCCEEEEEE-CS-SCCCCEEEC--
T ss_pred ceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEe---eCCEEEEEECccCcEEEEEE-CC-CCceEEecC--
Confidence 478888888654222 3333455 456664 789999999 78999999987544 44443 33 366777766
Q ss_pred CCcEEEEccCCCCeEEEEecCCCCcE-EEEe----CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecC
Q psy6570 83 SGRMFWTELGIKPRISGASIDGKNKF-NLVD----NNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTE 157 (713)
Q Consensus 83 ~~~ly~td~~~~~~I~~~~~dG~~~~-~l~~----~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~ 157 (713)
+++||.+| +.+ +|+.++....... .+.. ..+..++.|.+. +++||+..+..+.|.++|.....+...+...
T Consensus 136 g~~L~~Sd-Gs~-~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~ 211 (262)
T 3nol_A 136 DQYLIMSD-GTP-VLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDLN 211 (262)
T ss_dssp SSCEEECC-SSS-EEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEECT
T ss_pred CCEEEEEC-CCC-eEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEECC
Confidence 68999998 455 8999988754333 2221 124556677776 7899999999999999998655444333321
Q ss_pred C----------CCccceeeeee--CCeEEEEeCCCCcEEEEcc
Q psy6570 158 D----------NGYKPYKLEVF--EDNLYFSTYRTNNILKINK 188 (713)
Q Consensus 158 ~----------~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~ 188 (713)
. ...-|.||+++ +++||+|...=.+++++..
T Consensus 212 ~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~ 254 (262)
T 3nol_A 212 GILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITL 254 (262)
T ss_dssp TGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred cCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEE
Confidence 1 12346788876 6789999866667777654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.4e-07 Score=90.64 Aligned_cols=164 Identities=11% Similarity=0.049 Sum_probs=113.2
Q ss_pred cCCCCC--ceEEEeccCCeEEEeecCCCCCCeEEEEecCC-ceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEE
Q psy6570 23 SNLHDP--RGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEG-RKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISG 99 (713)
Q Consensus 23 ~~~~~p--~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G-~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~ 99 (713)
+....+ +||+++ ++.||++.. ..++|.+++++. +....+ ...-....||+++ +++||.++|..+ ++++
T Consensus 50 phd~~~ftqGL~~~--~~~Ly~stG---~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~-~v~V 120 (268)
T 3nok_A 50 PHATNAFTQGLVFH--QGHFFESTG---HQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEG-LLFT 120 (268)
T ss_dssp ECCTTCCEEEEEEE--TTEEEEEET---TTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSC-EEEE
T ss_pred cCCCccccceEEEE--CCEEEEEcC---CCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCC-EEEE
Confidence 344445 799987 589999998 677899999864 444444 2322234567775 689999999877 9999
Q ss_pred EecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCce-eEEEecC--CCCccceeeeeeCCeEEEE
Q psy6570 100 ASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDR-FVVYHTE--DNGYKPYKLEVFEDNLYFS 176 (713)
Q Consensus 100 ~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~-~~~~~~~--~~~~~p~~i~~~~~~ly~t 176 (713)
++.+......-+... ..+.||+.| +++||++| ++++|+.+|...... ..+.... ..+..+..|.+.+++||+.
T Consensus 121 ~D~~Tl~~~~ti~~~-~eGwGLt~D--g~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyan 196 (268)
T 3nok_A 121 WSGMPPQRERTTRYS-GEGWGLCYW--NGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYAN 196 (268)
T ss_dssp EETTTTEEEEEEECS-SCCCCEEEE--TTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred EECCcCcEEEEEeCC-CceeEEecC--CCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEE
Confidence 998644333333322 345677776 78999999 589999999866433 2222211 1122344566678899999
Q ss_pred eCCCCcEEEEcccCCCcceeeec
Q psy6570 177 TYRTNNILKINKFGNSDFNVLAN 199 (713)
Q Consensus 177 d~~~~~i~~~~~~~~~~~~~~~~ 199 (713)
.|..+.|.+|++..+.....+..
T Consensus 197 vw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 197 IWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp ETTCSEEEEECTTTCBEEEEEEC
T ss_pred ECCCCeEEEEeCCCCcEEEEEEC
Confidence 99999999999988776665544
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.79 E-value=7.2e-07 Score=87.23 Aligned_cols=173 Identities=11% Similarity=0.111 Sum_probs=114.8
Q ss_pred ccCCceeEEEccCcccEEecCCCCC--ceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcC
Q psy6570 4 ISSGNVTRVKREMNLKTVLSNLHDP--RGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEP 81 (713)
Q Consensus 4 ~~~~~I~~~~~~~~~~~~~~~~~~p--~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~ 81 (713)
...++|.++++.+.+.+....-..+ +||+++ +++||++.+ ..++|+++|++......-+... ..+.+|+.|
T Consensus 72 G~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~--g~~Ly~ltw---~~~~v~V~D~~Tl~~~~ti~~~-~eGwGLt~D- 144 (268)
T 3nok_A 72 GHQGTLRQLSLESAQPVWMERLGNIFAEGLASD--GERLYQLTW---TEGLLFTWSGMPPQRERTTRYS-GEGWGLCYW- 144 (268)
T ss_dssp TTTTEEEECCSSCSSCSEEEECTTCCEEEEEEC--SSCEEEEES---SSCEEEEEETTTTEEEEEEECS-SCCCCEEEE-
T ss_pred CCCCEEEEEECCCCcEEeEECCCCcceeEEEEe--CCEEEEEEc---cCCEEEEEECCcCcEEEEEeCC-CceeEEecC-
Confidence 3456688888886532211122334 556664 789999999 7899999998754433333333 456788876
Q ss_pred CCCcEEEEccCCCCeEEEEecCCCCcEEEEeC-----CCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEec
Q psy6570 82 LSGRMFWTELGIKPRISGASIDGKNKFNLVDN-----NIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHT 156 (713)
Q Consensus 82 ~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~-----~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~ 156 (713)
.++||.+| +.+ +|+.++........-+.. .+..++.|.+. +++||++.+..+.|.++|.........+..
T Consensus 145 -g~~L~vSd-Gs~-~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 145 -NGKLVRSD-GGT-MLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp -TTEEEEEC-SSS-EEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred -CCEEEEEC-CCC-EEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 68999999 555 899998776443332221 24456777776 789999999999999999865444333322
Q ss_pred C-----------CCCccceeeeee--CCeEEEEeCCCCcEEEEcc
Q psy6570 157 E-----------DNGYKPYKLEVF--EDNLYFSTYRTNNILKINK 188 (713)
Q Consensus 157 ~-----------~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~ 188 (713)
. ....-+.||+++ .++||+|...=.+++++..
T Consensus 220 ~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~ 264 (268)
T 3nok_A 220 SALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRL 264 (268)
T ss_dssp HHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred CCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence 1 012356788887 6789999866667777654
|
| >1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A | Back alignment and structure |
|---|
Probab=98.78 E-value=4.6e-09 Score=84.17 Aligned_cols=65 Identities=31% Similarity=0.816 Sum_probs=54.2
Q ss_pred cCCC-CCCCCCcEeccCCCCccccCCCCCc--CCCCc-cCCCCC--CCCCCeeecCCCCCeecCCCCccCCC
Q psy6570 417 QCLN-LKCQNGGVCVNKTTGLECDCPKFYY--GKNCQ-YSQCKN--YCVNGECSITDSGPKCMCSPGYSGKK 482 (713)
Q Consensus 417 ~C~~-~~C~~~~~C~~~~~~~~C~C~~G~~--g~~C~-~~~C~~--~~~~~~C~~~~~~~~C~C~~G~~g~~ 482 (713)
+|.. .+|.+ ++|+++.++|+|.|++||. |..|+ +++|.. .|.++.|.++.++|+|.|++||+|+.
T Consensus 7 eC~~~~~C~~-g~C~n~~g~y~C~C~~Gy~~~g~~C~dideC~~~~~C~~~~C~n~~g~y~C~C~~G~~g~~ 77 (82)
T 1emn_A 7 ECKEPDVCKH-GQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGP 77 (82)
T ss_dssp SSSSTTSCSS-SEECCCSSCCCEECCTTEEEETTEEEECCGGGTCCTTSSSCEEECSSSEEECCSSSSCCCS
T ss_pred cCCCCCCcCC-CEEEecCCCEEEECCCCeECCCCccCCcccccCCCCCCCCEeECCCCCEEeECCCCeEeCC
Confidence 5664 67875 8999999999999999997 88897 788862 37778999999999999999998764
|
| >1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* | Back alignment and structure |
|---|
Probab=98.77 E-value=5.8e-09 Score=89.58 Aligned_cols=89 Identities=28% Similarity=0.575 Sum_probs=62.8
Q ss_pred CCCCCCCC--------CCCCcEEcCCCCCeeccCCCCCCCCCCcccCCCCCCCCCCCCCCCC--CCCCCcEEeecCCCce
Q psy6570 505 GKKCDTCT--------CLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPN--YCSNNGTCVLIEGKPS 574 (713)
Q Consensus 505 g~~C~~~~--------C~~~g~C~~~~~~~~C~C~~g~~G~~C~~~~~~~~c~~~~~~C~~~--~C~~~~~C~~~~g~~~ 574 (713)
+++|...| |.++++|++..++|+|.|++||+|..|+.... .++|... .|.+ +|+++.++|+
T Consensus 6 ~d~C~~~p~~~~C~~~C~~~g~C~~~~~~y~C~C~~G~~G~~C~~~~~-------~~~C~~~~~~C~~--~C~n~~g~y~ 76 (114)
T 1aut_L 6 GDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVS-------FLNCSLDNGGCTH--YCLEEVGWRR 76 (114)
T ss_dssp --CCCCCSSCCSSSSTTTTSEEECCCSSCCCEEECTTEESTTSCEECC-------SSSSSSGGGGCSS--EEEECSSSEE
T ss_pred cccccCCCccccccccCCCcCCCCCCCCCcEeeCCCCCcCCCcCcCCc-------CCcCcCCCCCCCC--EeECCCCCEE
Confidence 34565556 88999999999999999999999999985421 2466633 3543 9999999999
Q ss_pred eeCCCCCc----CCCCCcCCCCCCCCCCCCCCCeEec
Q psy6570 575 CKCLPPYS----GKQCTEREDSPSCHNYCDNAGLCSY 607 (713)
Q Consensus 575 C~C~~G~~----G~~C~~~~~~~~C~~~C~~~g~C~~ 607 (713)
|.|++||+ |+.|++. -..+|.+.+.|+.
T Consensus 77 C~C~~G~~~~~~g~~C~~~-----~~~pC~~~~~~i~ 108 (114)
T 1aut_L 77 CSCAPGYKLGDDLLQCHPA-----VKFPCGRPWKRME 108 (114)
T ss_dssp EECCTTEEECTTSSCEEEC-----SSSCTTCCC----
T ss_pred eECCCCeeECCCCCccCcC-----cccCCCCCCccCC
Confidence 99999999 4556543 1345766666654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.77 E-value=5e-07 Score=87.68 Aligned_cols=163 Identities=12% Similarity=0.000 Sum_probs=108.9
Q ss_pred CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCce-EEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCC
Q psy6570 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK-KRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGK 105 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~-~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~ 105 (713)
.-+||++|. ++||.+... .....|.+++++... ...+.........||+++ +++||..+|..+ ++++++++.-
T Consensus 22 ftqGL~~~~--~~LyestG~-~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~-~v~v~D~~tl 95 (243)
T 3mbr_X 22 FTEGLFYLR--GHLYESTGE-TGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNH-EGFVYDLATL 95 (243)
T ss_dssp CEEEEEEET--TEEEEEECC-TTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSS-EEEEEETTTT
T ss_pred ccccEEEEC--CEEEEECCC-CCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCC-EEEEEECCcC
Confidence 346999984 899998751 124689999997544 333332222234566665 789999999877 9999998654
Q ss_pred CcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCce-eEEEecC--CCCccceeeeeeCCeEEEEeCCCCc
Q psy6570 106 NKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDR-FVVYHTE--DNGYKPYKLEVFEDNLYFSTYRTNN 182 (713)
Q Consensus 106 ~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~-~~~~~~~--~~~~~p~~i~~~~~~ly~td~~~~~ 182 (713)
....-+... ..+.||+-| +++||++| ++++|+.+|...... ..+.... ..+.....|...+++||...|.++.
T Consensus 96 ~~~~ti~~~-~~Gwglt~d--g~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~ 171 (243)
T 3mbr_X 96 TPRARFRYP-GEGWALTSD--DSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSR 171 (243)
T ss_dssp EEEEEEECS-SCCCEEEEC--SSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTE
T ss_pred cEEEEEeCC-CCceEEeeC--CCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCe
Confidence 333333322 245566655 88999999 488999999866433 2222211 1122334566678999999999999
Q ss_pred EEEEcccCCCcceeeec
Q psy6570 183 ILKINKFGNSDFNVLAN 199 (713)
Q Consensus 183 i~~~~~~~~~~~~~~~~ 199 (713)
|.+|++..+.....+..
T Consensus 172 I~vIDp~tG~V~~~idl 188 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDL 188 (243)
T ss_dssp EEEECTTTCBEEEEEEC
T ss_pred EEEEECCCCCEEEEEEC
Confidence 99999988876666543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-06 Score=92.77 Aligned_cols=198 Identities=9% Similarity=0.011 Sum_probs=119.9
Q ss_pred ceeEEEccCcccEE-ecCCCCCceEEEeccCCeEEEeecCC------CCCCeEEEEecCCce-EEEEEcC-C-----CCC
Q psy6570 8 NVTRVKREMNLKTV-LSNLHDPRGVAVDWVGKNLYWTDAGG------RSSNNIMVSTLEGRK-KRTLLNT-G-----LNE 73 (713)
Q Consensus 8 ~I~~~~~~~~~~~~-~~~~~~p~gla~D~~~~~ly~td~~~------~~~~~I~~~~~~G~~-~~~l~~~-~-----~~~ 73 (713)
.|+.+++.+.+.+. +.....| +|++.+.+++||+++... ...+.|.++++.... ...+... . ...
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~ 126 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY 126 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCC
Confidence 67888887644222 4444568 999999999999998410 024678899886433 3333211 0 256
Q ss_pred cceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEE-EeC---------------------------------------
Q psy6570 74 PYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNL-VDN--------------------------------------- 113 (713)
Q Consensus 74 p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l-~~~--------------------------------------- 113 (713)
|.+|+++|..++||+++......|.+++ +....... +..
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~ 205 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVG 205 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEecc
Confidence 9999999999999999754222566555 32211100 000
Q ss_pred ---------------------------------------------C-----------CCCCee---EEEeCCCCeEEEEc
Q psy6570 114 ---------------------------------------------N-----------IQWPTG---ITIDYPSQRLYWAD 134 (713)
Q Consensus 114 ---------------------------------------------~-----------~~~p~g---lavd~~~~~LY~~d 134 (713)
. ...|.+ +++++++++||++.
T Consensus 206 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~ 285 (373)
T 2mad_H 206 AMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLT 285 (373)
T ss_pred ccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEe
Confidence 0 001344 77777778888874
Q ss_pred C---------CCCcEEEEeCCCCceeEEEecCCCCccceeeeee--CC-eEEEEeCCCCcEEEEcccCCCcceeeecccc
Q psy6570 135 P---------KARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF--ED-NLYFSTYRTNNILKINKFGNSDFNVLANNLN 202 (713)
Q Consensus 135 ~---------~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~--~~-~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~ 202 (713)
. ..+.|+.+|+....+...+.. ...|.+|++. +. .||++.+..+.|..++..+......+..-..
T Consensus 286 ~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~ 362 (373)
T 2mad_H 286 SEQSAWKLHAAAKEVTSVTGLVGQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGS 362 (373)
T ss_pred ccCCcccccCCCCeEEEEECCCCEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeecCCCC
Confidence 3 235788888765443222222 2246666665 55 6787777789999999877766655333235
Q ss_pred ccccEEEE
Q psy6570 203 RASDVLIL 210 (713)
Q Consensus 203 ~~~~i~v~ 210 (713)
.|..|.+.
T Consensus 363 ~P~~~~~~ 370 (373)
T 2mad_H 363 GPQVLSVM 370 (373)
T ss_pred CCcEEEEc
Confidence 56666543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-07 Score=102.00 Aligned_cols=134 Identities=16% Similarity=0.206 Sum_probs=90.3
Q ss_pred CcccCCceeEEEcc-CcccEEe--c-------CCCCCceEEEecc---CCeEEEeecCCC---------CCCeEEEEecC
Q psy6570 2 ASISSGNVTRVKRE-MNLKTVL--S-------NLHDPRGVAVDWV---GKNLYWTDAGGR---------SSNNIMVSTLE 59 (713)
Q Consensus 2 ad~~~~~I~~~~~~-~~~~~~~--~-------~~~~p~gla~D~~---~~~ly~td~~~~---------~~~~I~~~~~~ 59 (713)
++...++|++++.. +...++. . +...+.|||+++. ++.||+++.... ...+|.+++++
T Consensus 43 ~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~ 122 (454)
T 1cru_A 43 TERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYN 122 (454)
T ss_dssp EETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEE
T ss_pred EEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEEC
Confidence 33444578888764 3333321 1 2233459999986 899999986200 03589998875
Q ss_pred Cc-----eEEEEEc----CCCCCcceEEEcCCCCcEEEEccC-------------------------------CCCeEEE
Q psy6570 60 GR-----KKRTLLN----TGLNEPYDIALEPLSGRMFWTELG-------------------------------IKPRISG 99 (713)
Q Consensus 60 G~-----~~~~l~~----~~~~~p~~iavD~~~~~ly~td~~-------------------------------~~~~I~~ 99 (713)
+. ..++|+. .....+.+|++++ +|+||++... ..++|+|
T Consensus 123 ~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlR 201 (454)
T 1cru_A 123 KSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLR 201 (454)
T ss_dssp TTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEE
T ss_pred CCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEE
Confidence 42 2334442 2246689999997 7899998421 1358999
Q ss_pred EecCCCC----------cEEEEeCCCCCCeeEEEeCCCCeEEEEcCCC
Q psy6570 100 ASIDGKN----------KFNLVDNNIQWPTGITIDYPSQRLYWADPKA 137 (713)
Q Consensus 100 ~~~dG~~----------~~~l~~~~~~~p~glavd~~~~~LY~~d~~~ 137 (713)
++.||+. +..++...+..|.||++|+ +++||++|...
T Consensus 202 i~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp-~G~L~~~d~g~ 248 (454)
T 1cru_A 202 LNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP-NGKLLQSEQGP 248 (454)
T ss_dssp ECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT-TSCEEEEEECS
T ss_pred EeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECC-CCCEEEEecCC
Confidence 9999983 2345566899999999998 69999998543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=3e-07 Score=95.19 Aligned_cols=183 Identities=10% Similarity=-0.007 Sum_probs=122.9
Q ss_pred cccCCceeEEEcc--CcccEE--ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecC--CceEEEEEc-CCCCCcc
Q psy6570 3 SISSGNVTRVKRE--MNLKTV--LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE--GRKKRTLLN-TGLNEPY 75 (713)
Q Consensus 3 d~~~~~I~~~~~~--~~~~~~--~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~--G~~~~~l~~-~~~~~p~ 75 (713)
+..++.|..++++ +..+.+ ......|.+|++++.++.||++.. ..+.|.+++++ +...+.+.. .....|.
T Consensus 11 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (343)
T 1ri6_A 11 SPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESALPGSLT 87 (343)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred CCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeec---CCCeEEEEEecCCCCceeeccccccCCCCc
Confidence 3557888888885 322222 455678999999999888999987 55788887776 333222211 1124899
Q ss_pred eEEEcCCCCcEEEEccCCCCeEEEEecC-CCCcEEEE-eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC-CceeE
Q psy6570 76 DIALEPLSGRMFWTELGIKPRISGASID-GKNKFNLV-DNNIQWPTGITIDYPSQRLYWADPKARTIESINLNG-KDRFV 152 (713)
Q Consensus 76 ~iavD~~~~~ly~td~~~~~~I~~~~~d-G~~~~~l~-~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g-~~~~~ 152 (713)
.|+++|.+++||++..... .|...+++ |...+.+. ......|.++++++.+++||+++...++|..++++. .....
T Consensus 88 ~~~~s~dg~~l~~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 166 (343)
T 1ri6_A 88 HISTDHQGQFVFVGSYNAG-NVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 166 (343)
T ss_dssp EEEECTTSSEEEEEETTTT-EEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred EEEEcCCCCEEEEEecCCC-eEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceee
Confidence 9999998888999986544 67777773 32222222 234556899999998889999997788899888765 32222
Q ss_pred EE---ecCCCCccceeeeee--CCeEEEEeCCCCcEEEEccc
Q psy6570 153 VY---HTEDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 153 ~~---~~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~ 189 (713)
+. ........|.++++. +.+||+++...+.|..++..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~ 208 (343)
T 1ri6_A 167 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK 208 (343)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred ecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 11 111112356666665 55799998788888888764
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=5.3e-07 Score=94.99 Aligned_cols=163 Identities=12% Similarity=0.123 Sum_probs=105.1
Q ss_pred CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecC--CceEEE-EEc--CCCCCcceEEEcCCCCcEEEEccCCCCeEE
Q psy6570 24 NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE--GRKKRT-LLN--TGLNEPYDIALEPLSGRMFWTELGIKPRIS 98 (713)
Q Consensus 24 ~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~--G~~~~~-l~~--~~~~~p~~iavD~~~~~ly~td~~~~~~I~ 98 (713)
....|.++++++.++.||+++. ..++|.+++++ |+...+ .+. .....|.+|+++|..++||+++...+ .|.
T Consensus 143 ~~~~~~~~~~spdG~~l~~~~~---~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~-~v~ 218 (365)
T 1jof_A 143 ENTGIHGMVFDPTETYLYSADL---TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN-RIC 218 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT-EEE
T ss_pred CCCcceEEEECCCCCEEEEEcC---CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCC-eEE
Confidence 4567999999999888999997 57899999986 443221 121 11367999999998889999986555 777
Q ss_pred EEecC---CCCc---EEEEeC--CC---C-------CCeeEE-EeCCCCeEEEEcCCCC-----cEEEEeCC--CCceeE
Q psy6570 99 GASID---GKNK---FNLVDN--NI---Q-------WPTGIT-IDYPSQRLYWADPKAR-----TIESINLN--GKDRFV 152 (713)
Q Consensus 99 ~~~~d---G~~~---~~l~~~--~~---~-------~p~gla-vd~~~~~LY~~d~~~~-----~I~~~~~~--g~~~~~ 152 (713)
+.+++ |+.. +.+... .+ . .|.+|+ +++++++||+++...+ +|..++++ |....+
T Consensus 219 v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~ 298 (365)
T 1jof_A 219 EYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQ 298 (365)
T ss_dssp EEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEE
T ss_pred EEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEe
Confidence 77665 3221 112111 11 2 488999 9999999999986554 77777764 332221
Q ss_pred E--EecCCCCccceeeee---eCCeEEEEeCCCCcEEEEcccC
Q psy6570 153 V--YHTEDNGYKPYKLEV---FEDNLYFSTYRTNNILKINKFG 190 (713)
Q Consensus 153 ~--~~~~~~~~~p~~i~~---~~~~ly~td~~~~~i~~~~~~~ 190 (713)
. ..........+.++. ++++||+++...+.|..++...
T Consensus 299 ~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 299 LFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred eeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 1 111111223333444 5678999987777777766543
|
| >2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... | Back alignment and structure |
|---|
Probab=98.72 E-value=1.9e-09 Score=95.47 Aligned_cols=75 Identities=29% Similarity=0.776 Sum_probs=28.0
Q ss_pred CCCCCCCCCCCCcEEeecCCCceeeCCCCCcCCCCCcCCCC-CCCC---CCCCCCCeEecCCCCcceeecCCCcc----c
Q psy6570 552 ANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDS-PSCH---NYCDNAGLCSYSKQGKPVCTCVNGWS----G 623 (713)
Q Consensus 552 ~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~-~~C~---~~C~~~g~C~~~~~g~~~C~C~~G~~----G 623 (713)
+++|.+++|.++|+|++..++|+|.|++||+|..|+.. + ++|. ..|.+ +|++.. ++|.|.|++||+ |
T Consensus 42 ~d~C~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~~--i~d~C~~~~~~C~~--~C~~~~-g~y~C~C~~Gy~l~~~g 116 (134)
T 2vh0_B 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF--TRKLCSLDNGDCDQ--FCHEEQ-NSVVCSCARGYTLADNG 116 (134)
T ss_dssp -----------------------------------------CCGGGTGGGGCSS--EEEEET-TEEEEECCTTEEECTTS
T ss_pred cCcCCCCCCCCcCCcccCCCCEEeeCCCCccCCccccC--CCCccccCCCCCCC--EeECCC-CCEEEECCCCcEECCCC
Confidence 57899999999999999999999999999999999863 2 5572 35765 899876 899999999999 8
Q ss_pred CCCCcCCC
Q psy6570 624 ITCSERVS 631 (713)
Q Consensus 624 ~~C~~~~~ 631 (713)
..|+++++
T Consensus 117 ~~C~~~~~ 124 (134)
T 2vh0_B 117 KACIPTGP 124 (134)
T ss_dssp SCEEESSS
T ss_pred CccCcCCC
Confidence 88877543
|
| >1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* | Back alignment and structure |
|---|
Probab=98.72 E-value=9e-09 Score=92.39 Aligned_cols=76 Identities=32% Similarity=0.702 Sum_probs=58.4
Q ss_pred CCCcCCCCCCC-CCCCCCCCeEecCCCCcceeecCCCcccCCCCcCCCCC---CCCCCCCee-cCCCCccCCCCCceeeC
Q psy6570 585 QCTEREDSPSC-HNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSERVSCA---HFCFNGGTC-REQNYSLDPDLKPICIC 659 (713)
Q Consensus 585 ~C~~~~~~~~C-~~~C~~~g~C~~~~~g~~~C~C~~G~~G~~C~~~~~C~---~~C~~~~~C-~~~~~~~~~~~~~~C~C 659 (713)
.|.++ ++| .++|.++|+|++.. ++|.|.|++||+|..|++.++|. ..|.+ +| + +..++|+|.|
T Consensus 44 ~c~di---deC~~~pC~n~g~C~~~~-~~y~C~C~~G~~G~~C~~~deC~~~~~~C~~--~C~~------n~~g~y~C~C 111 (146)
T 1x7a_L 44 QYVDG---DQCEPNPCLNGGLCKDDI-NSYECWCQVGFEGKNCELDATCNIKNGRCKQ--FCKT------GADSKVLCSC 111 (146)
T ss_dssp ---------CCSSCSSCTTCEEEECS-SCEEEECCSSEESTTTCEECCTTSGGGSCSS--BCCC------CSSSCCCCBC
T ss_pred cCCCc---CcCCCCCCCCCCEeECCC-CCEEEecCCCCcCCcCCCCccccCCCCCCcC--CCCC------CCCCCEEeEc
Confidence 45554 788 78899999999887 89999999999999999988886 24544 66 4 3567799999
Q ss_pred CCCcc----cCCCCccc
Q psy6570 660 PRGYA----GVRCQTLV 672 (713)
Q Consensus 660 ~~Gy~----G~~C~~~~ 672 (713)
++||+ |..|+...
T Consensus 112 ~~Gy~l~~dG~~C~~~~ 128 (146)
T 1x7a_L 112 TTGYRLAPDQKSCKPAV 128 (146)
T ss_dssp CTTEEECTTSSSEEECS
T ss_pred CCCcEeCCCCCcCCCCC
Confidence 99999 88997654
|
| >2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A | Back alignment and structure |
|---|
Probab=98.72 E-value=5.6e-09 Score=99.68 Aligned_cols=103 Identities=30% Similarity=0.772 Sum_probs=75.4
Q ss_pred CCCCCCcEEcCCCCCeeccCCCCCCCCCCcccCCCCCCCCCCCCCC----CCCCCCCcEEeecCCCceeeCCCC------
Q psy6570 511 CTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCT----PNYCSNNGTCVLIEGKPSCKCLPP------ 580 (713)
Q Consensus 511 ~~C~~~g~C~~~~~~~~C~C~~g~~G~~C~~~~~~~~c~~~~~~C~----~~~C~~~~~C~~~~g~~~C~C~~G------ 580 (713)
..|.++|+|+. +.|.|++||+|..|++......-......|. ..+|+++|+|+. .+|.|.+|
T Consensus 96 ~~Csg~G~C~~----g~C~C~~G~~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Csg~G~C~~----g~C~C~~gw~~~~~ 167 (217)
T 2p28_B 96 SLCHGKGFLEC----GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC----GQCLCHTSDVPGKL 167 (217)
T ss_dssp CTTTTSEEEET----TEEEECTTEESTTSCEECCCCC-GGGGGGGBSSTTSCBGGGTEEEET----TEEEECCCCSTTCC
T ss_pred CccCCCceEEC----CEEECCCCccCCcccccCcccccccCCCcCCCCCCCCCCCCCCEEeC----CceECCCCCCCccc
Confidence 46888999984 5899999999999996532210000001233 457999999983 47999999
Q ss_pred CcCCCCCcCCCCCCCCC----CCCCC--CeEecCCCCcceeecCCCcccCCCCc
Q psy6570 581 YSGKQCTEREDSPSCHN----YCDNA--GLCSYSKQGKPVCTCVNGWSGITCSE 628 (713)
Q Consensus 581 ~~G~~C~~~~~~~~C~~----~C~~~--g~C~~~~~g~~~C~C~~G~~G~~C~~ 628 (713)
|+|..|+.. ...|.. +|.++ |+|.. .+|.|.+||+|..|+.
T Consensus 168 ~~G~~Ce~~--~~~C~~~~g~~C~~~~~G~C~~-----g~C~C~~G~~G~~C~~ 214 (217)
T 2p28_B 168 IYGQYCECD--TINCERYNGQVCGGPGRGLCFC-----GKCRCHPGFEGSACQH 214 (217)
T ss_dssp EESTTSCEE--SSCSCEETTEETTCTTTEEEET-----TEEEECTTEESTTSCE
T ss_pred EECCCcccC--CccCCCCCCCCCCCCCCcEEeC-----CeeECCCCCccCCcCC
Confidence 589999842 256733 59888 99984 2699999999999975
|
| >2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... | Back alignment and structure |
|---|
Probab=98.71 E-value=4.1e-09 Score=94.42 Aligned_cols=75 Identities=33% Similarity=0.749 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCcEEcCCCCCeeccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCc---EEeecCC-CceeeCCCCC
Q psy6570 506 KKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNG---TCVLIEG-KPSCKCLPPY 581 (713)
Q Consensus 506 ~~C~~~~C~~~g~C~~~~~~~~C~C~~g~~G~~C~~~~~~~~c~~~~~~C~~~~C~~~~---~C~~~~g-~~~C~C~~G~ 581 (713)
+.|...||.++++|++..++|+|.|++||+|..|+.. +++|...+|.+++ +|+++.+ +|+|.|++||
T Consensus 48 d~C~~~pC~n~g~C~~~~g~y~C~C~~G~~G~~C~~~---------~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy 118 (142)
T 2c4f_L 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETH---------KDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGY 118 (142)
T ss_dssp CGGGGCCCCTTCEEEEETTEEEEECCTTEESTTSCEE---------GGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTE
T ss_pred CcCcCCCcCCCCEEeCCCCCEEeeCCCCccCCccccC---------ccccccccCCCCCccCEeECCCCCCEEEECCCCc
Confidence 4566779999999999999999999999999999853 2344333344444 9999999 9999999999
Q ss_pred c----CCCCCcC
Q psy6570 582 S----GKQCTER 589 (713)
Q Consensus 582 ~----G~~C~~~ 589 (713)
+ |..|++.
T Consensus 119 ~l~~dG~~C~~~ 130 (142)
T 2c4f_L 119 SLLADGVSCTPT 130 (142)
T ss_dssp EECTTSSCEEES
T ss_pred eECCCCCCCCCC
Confidence 9 8888875
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=6.9e-07 Score=92.16 Aligned_cols=169 Identities=11% Similarity=-0.009 Sum_probs=112.2
Q ss_pred CcccCCceeEEEccCcccEE-ecCCC---CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEE-EEEcCCC----C
Q psy6570 2 ASISSGNVTRVKREMNLKTV-LSNLH---DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKR-TLLNTGL----N 72 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~~~~-~~~~~---~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~-~l~~~~~----~ 72 (713)
+....++|..+++.+...+. +..-. .|.++++++.++.||++.. ..+.|.++++...... .+..... .
T Consensus 6 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 82 (337)
T 1pby_B 6 APARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC---CCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence 44567889999987643222 33223 5999999998889999987 6789999998654433 3332211 2
Q ss_pred CcceEEEcCCCCcEEEEccC----------CCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEE
Q psy6570 73 EPYDIALEPLSGRMFWTELG----------IKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIES 142 (713)
Q Consensus 73 ~p~~iavD~~~~~ly~td~~----------~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~ 142 (713)
.|.+|+++|..++||+++.. ....|.+.++++......+.. -..|.++++++.+++||++ .+.|+.
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~---~~~i~~ 158 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL---GRDLHV 158 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE---SSSEEE
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe---CCeEEE
Confidence 79999999988899998521 123899999876544444432 3468999999988899999 367999
Q ss_pred EeCCCCceeEEEecCCCCccceeeeeeCCeEEEEeC
Q psy6570 143 INLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTY 178 (713)
Q Consensus 143 ~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~ 178 (713)
+++............. ...|..+..++..||++..
T Consensus 159 ~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~ 193 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQS-WEAETYAQPDVLAVWNQHE 193 (337)
T ss_dssp EETTTTEEEEEECSTT-TTTTTBCCCBCCCCCCCCT
T ss_pred EECCCCcEeeeeeccc-cCCCceeCCCccEEeeecc
Confidence 9987654433332211 1234455555555555443
|
| >1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.8e-09 Score=85.80 Aligned_cols=69 Identities=29% Similarity=0.725 Sum_probs=57.4
Q ss_pred CCCCCCCC--CCCCcEEeecCCCceeeCCCCCc----CCCCCcCCCCCCC-CCCCCCCCeEecCCCCcceeecCCCcccC
Q psy6570 552 ANKCTPNY--CSNNGTCVLIEGKPSCKCLPPYS----GKQCTEREDSPSC-HNYCDNAGLCSYSKQGKPVCTCVNGWSGI 624 (713)
Q Consensus 552 ~~~C~~~~--C~~~~~C~~~~g~~~C~C~~G~~----G~~C~~~~~~~~C-~~~C~~~g~C~~~~~g~~~C~C~~G~~G~ 624 (713)
+++|..++ | ++++|+++.++|+|.|++||+ |..|+++ ++| ..+|. ++|++.. ++|.|.|+ ||.|.
T Consensus 3 ideC~~~~~~C-~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~di---deC~~~~C~--~~C~n~~-g~y~C~C~-g~~G~ 74 (87)
T 1z6c_A 3 VDECSLKPSIC-GTAVCKNIPGDFECECPEGYRYNLKSKSCEDI---DECSENMCA--QLCVNYP-GGYTCYCD-GKKGF 74 (87)
T ss_dssp SCSSSSSSSSB-TTSSCCCBTTBCCCSSSTTCEEETTTTEEECC---CHHHHSCCS--SEECCCS-SSCCEECC-SSSCC
T ss_pred cccccCCCCCC-CCCEeECCCCCEEEECCCCceECCCCCcCCCc---CeeCCCCCC--CEEEccC-CCEEEECC-CCcCC
Confidence 67888776 8 788999999999999999999 7889754 888 67786 6999887 89999997 66666
Q ss_pred CCCc
Q psy6570 625 TCSE 628 (713)
Q Consensus 625 ~C~~ 628 (713)
.++.
T Consensus 75 ~~~~ 78 (87)
T 1z6c_A 75 KLAQ 78 (87)
T ss_dssp BCCT
T ss_pred cccC
Confidence 5543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=4.6e-07 Score=93.89 Aligned_cols=151 Identities=11% Similarity=0.031 Sum_probs=108.5
Q ss_pred CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecC
Q psy6570 24 NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASID 103 (713)
Q Consensus 24 ~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~d 103 (713)
....++++++|+.++.|||++. ..+.|.++++++...+.+.. . ..|.+|++++ ++.||++.. . .|++++++
T Consensus 47 ~~~~~egp~~~~~~~~l~~~d~---~~~~i~~~d~~~~~~~~~~~-~-~~v~~i~~~~-dg~l~v~~~--~-gl~~~d~~ 117 (326)
T 2ghs_A 47 PMLLGEGPTFDPASGTAWWFNI---LERELHELHLASGRKTVHAL-P-FMGSALAKIS-DSKQLIASD--D-GLFLRDTA 117 (326)
T ss_dssp CCSBEEEEEEETTTTEEEEEEG---GGTEEEEEETTTTEEEEEEC-S-SCEEEEEEEE-TTEEEEEET--T-EEEEEETT
T ss_pred CCCCCcCCeEeCCCCEEEEEEC---CCCEEEEEECCCCcEEEEEC-C-CcceEEEEeC-CCeEEEEEC--C-CEEEEECC
Confidence 3456899999998899999998 67899999998876554432 2 5789999997 567777653 3 69999987
Q ss_pred CCCcEEEEeCC----CCCCeeEEEeCCCCeEEEEcC------CCCcEEEEeCCCCceeEEEecCCCCccceeeeee--CC
Q psy6570 104 GKNKFNLVDNN----IQWPTGITIDYPSQRLYWADP------KARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF--ED 171 (713)
Q Consensus 104 G~~~~~l~~~~----~~~p~glavd~~~~~LY~~d~------~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~--~~ 171 (713)
+...+.+.... ...++++++|+ .++||+++. ....|++++ +|... .+... ...|.++++. +.
T Consensus 118 ~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~-~~~~~---~~~~~~i~~s~dg~ 191 (326)
T 2ghs_A 118 TGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKVT-KLFAD---ISIPNSICFSPDGT 191 (326)
T ss_dssp TCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEEE-EEEEE---ESSEEEEEECTTSC
T ss_pred CCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe-CCcEE-EeeCC---CcccCCeEEcCCCC
Confidence 66555554321 24588999996 567888874 246899998 65433 23222 3356677665 45
Q ss_pred eEEEEeCCCCcEEEEccc
Q psy6570 172 NLYFSTYRTNNILKINKF 189 (713)
Q Consensus 172 ~ly~td~~~~~i~~~~~~ 189 (713)
.|||++...+.|++++..
T Consensus 192 ~lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 192 TGYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp EEEEEETTTCEEEEEEBC
T ss_pred EEEEEECCCCEEEEEEcc
Confidence 799999888899999864
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.5e-06 Score=96.69 Aligned_cols=190 Identities=7% Similarity=-0.037 Sum_probs=129.2
Q ss_pred CcccCCceeEEEccCcccE-EecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecC---CceEEEEEcCCCCCcceE
Q psy6570 2 ASISSGNVTRVKREMNLKT-VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE---GRKKRTLLNTGLNEPYDI 77 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~~~-~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~---G~~~~~l~~~~~~~p~~i 77 (713)
+...+++|..++..+.+.+ .+.....|+++++++.++.||+++. .+.|.++++. ++....+. .+ ..|.+|
T Consensus 172 ~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~----dg~V~viD~~~~t~~~v~~i~-~G-~~P~~i 245 (567)
T 1qks_A 172 TLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGR----DGKVNMIDLWMKEPTTVAEIK-IG-SEARSI 245 (567)
T ss_dssp EETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET----TSEEEEEETTSSSCCEEEEEE-CC-SEEEEE
T ss_pred EeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcC----CCeEEEEECCCCCCcEeEEEe-cC-CCCcee
Confidence 3445678889998875432 2445567999999999999999874 5789999994 44443333 33 569999
Q ss_pred EEc----CCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCC-----------CCCCeeEEEeCCCCeEEEEcCCCCcEEE
Q psy6570 78 ALE----PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNN-----------IQWPTGITIDYPSQRLYWADPKARTIES 142 (713)
Q Consensus 78 avD----~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~-----------~~~p~glavd~~~~~LY~~d~~~~~I~~ 142 (713)
+++ |..++||+++...+ .|.+++.........+... ..++.+|.+.+....+|++....++|+.
T Consensus 246 a~s~~~~pDGk~l~v~n~~~~-~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~ 324 (567)
T 1qks_A 246 ETSKMEGWEDKYAIAGAYWPP-QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL 324 (567)
T ss_dssp EECCSTTCTTTEEEEEEEETT-EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred EEccccCCCCCEEEEEEccCC-eEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence 999 57789999987766 7888875543333333321 1134678887777778888888999999
Q ss_pred EeCCCCceeEEEe-cCCCCccceeeeeeCCeEEEEeCCCCcEEEEcccCCCcceeee
Q psy6570 143 INLNGKDRFVVYH-TEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLA 198 (713)
Q Consensus 143 ~~~~g~~~~~~~~-~~~~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~~ 198 (713)
+++.......+.. ......+..+++.++.++|+++...++|..++...+.....+.
T Consensus 325 vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~ 381 (567)
T 1qks_A 325 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED 381 (567)
T ss_dssp EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred EecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe
Confidence 9986643222221 1112334455666678899999989999999987665444443
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-06 Score=97.72 Aligned_cols=186 Identities=9% Similarity=-0.052 Sum_probs=126.8
Q ss_pred cccCCceeEEEccCcccE-EecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEec--C-CceEEEEEcCCCCCcceEE
Q psy6570 3 SISSGNVTRVKREMNLKT-VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTL--E-GRKKRTLLNTGLNEPYDIA 78 (713)
Q Consensus 3 d~~~~~I~~~~~~~~~~~-~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~--~-G~~~~~l~~~~~~~p~~ia 78 (713)
....+.|..++..+.+.+ .+.....|+++++++.++.||+++. . +.|.++++ . ++....+. . ...|.+|+
T Consensus 155 ~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~---d-~~V~v~D~~~~t~~~~~~i~-~-g~~p~~va 228 (543)
T 1nir_A 155 LRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGR---D-ARIDMIDLWAKEPTKVAEIK-I-GIEARSVE 228 (543)
T ss_dssp EGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEET---T-SEEEEEETTSSSCEEEEEEE-C-CSEEEEEE
T ss_pred EcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECC---C-CeEEEEECcCCCCcEEEEEe-c-CCCcceEE
Confidence 345677888887754321 2332334899999999999999987 4 89999999 3 33333333 3 36799999
Q ss_pred EcC----CCCcEEEEccCCCCeEEEEecCCCCcEEEEeCC-----------CCCCeeEEEeCCCCeEEEEcCCCCcEEEE
Q psy6570 79 LEP----LSGRMFWTELGIKPRISGASIDGKNKFNLVDNN-----------IQWPTGITIDYPSQRLYWADPKARTIESI 143 (713)
Q Consensus 79 vD~----~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~-----------~~~p~glavd~~~~~LY~~d~~~~~I~~~ 143 (713)
++| .+++||+++.... .|..++.........+... -.++.+|++++..+++|++....++|+.+
T Consensus 229 ~sp~~~~dg~~l~v~~~~~~-~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vv 307 (543)
T 1nir_A 229 SSKFKGYEDRYTIAGAYWPP-QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV 307 (543)
T ss_dssp ECCSTTCTTTEEEEEEEESS-EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred eCCCcCCCCCEEEEEEccCC-eEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEE
Confidence 999 8889999986545 7877776544333333321 12567899998899999999999999999
Q ss_pred eCCCCc-eeE-EEecCCCCccceeeee--eCCeEEEEeCCCCcEEEEcccCCCcceeee
Q psy6570 144 NLNGKD-RFV-VYHTEDNGYKPYKLEV--FEDNLYFSTYRTNNILKINKFGNSDFNVLA 198 (713)
Q Consensus 144 ~~~g~~-~~~-~~~~~~~~~~p~~i~~--~~~~ly~td~~~~~i~~~~~~~~~~~~~~~ 198 (713)
++.... ..+ .... ...|.++.+ ++.+||++....+.|..++...+.....+.
T Consensus 308 d~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~ 363 (543)
T 1nir_A 308 NYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 363 (543)
T ss_dssp ECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred EecCCCcceeEEecc---CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec
Confidence 986533 221 1111 234544554 566799998888899999877665444443
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.5e-06 Score=89.37 Aligned_cols=159 Identities=13% Similarity=0.084 Sum_probs=106.3
Q ss_pred CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCC--ceE---EEEEcCC---------CCCcceEEEcCCCCcEEEE
Q psy6570 24 NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEG--RKK---RTLLNTG---------LNEPYDIALEPLSGRMFWT 89 (713)
Q Consensus 24 ~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G--~~~---~~l~~~~---------~~~p~~iavD~~~~~ly~t 89 (713)
....|..|++ .++.||+++. ..+.|.+++++. ... ..+...+ ...|.+++++|..++||++
T Consensus 98 ~~~~p~~~~~--dg~~l~~~~~---~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~ 172 (361)
T 3scy_A 98 MGADPCYLTT--NGKNIVTANY---SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLAD 172 (361)
T ss_dssp SSSCEEEEEE--CSSEEEEEET---TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEE
T ss_pred CCCCcEEEEE--CCCEEEEEEC---CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEE
Confidence 4567889998 4678999987 677888888753 221 1111111 2345789999987789999
Q ss_pred ccCCCCeEEEEecCCCCc-------------EEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEec
Q psy6570 90 ELGIKPRISGASIDGKNK-------------FNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHT 156 (713)
Q Consensus 90 d~~~~~~I~~~~~dG~~~-------------~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~ 156 (713)
+.+.. .|.+.+++.... ..+.......|.++++++++++||+++...++|..++++....+.+...
T Consensus 173 ~~~~~-~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~ 251 (361)
T 3scy_A 173 DLGTD-QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTV 251 (361)
T ss_dssp ETTTT-EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEE
T ss_pred eCCCC-EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEE
Confidence 98766 788777764331 1222234557899999998889999998888999988864433333221
Q ss_pred ---CCCCccceeeeee--CCeEEEEeCC-CCcEEEEcc
Q psy6570 157 ---EDNGYKPYKLEVF--EDNLYFSTYR-TNNILKINK 188 (713)
Q Consensus 157 ---~~~~~~p~~i~~~--~~~ly~td~~-~~~i~~~~~ 188 (713)
......|.+|++. +.+||+++.. .+.|..++.
T Consensus 252 ~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~ 289 (361)
T 3scy_A 252 AADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKV 289 (361)
T ss_dssp ESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred ecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence 1122345666664 6679999877 677766554
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=5.3e-07 Score=94.40 Aligned_cols=197 Identities=7% Similarity=-0.064 Sum_probs=120.6
Q ss_pred ceeEEEccCcccEE-ecCCCCCceEEEeccCCeEEEeecCC------CCCCeEEEEecCCceE-EEEEcC-C-----CCC
Q psy6570 8 NVTRVKREMNLKTV-LSNLHDPRGVAVDWVGKNLYWTDAGG------RSSNNIMVSTLEGRKK-RTLLNT-G-----LNE 73 (713)
Q Consensus 8 ~I~~~~~~~~~~~~-~~~~~~p~gla~D~~~~~ly~td~~~------~~~~~I~~~~~~G~~~-~~l~~~-~-----~~~ 73 (713)
+|+.+|+++.+.+- +.....| +|++++.+++||+++... ...+.|.++|+..... ..+... . ...
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~ 125 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPR 125 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCC
T ss_pred eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCC
Confidence 67788888754222 4444568 999999999999998410 0357899999876443 333222 1 257
Q ss_pred cceEEEcCCCCcEEEEccCCCCeEEE--EecC----------------C---------CCcEE-----------------
Q psy6570 74 PYDIALEPLSGRMFWTELGIKPRISG--ASID----------------G---------KNKFN----------------- 109 (713)
Q Consensus 74 p~~iavD~~~~~ly~td~~~~~~I~~--~~~d----------------G---------~~~~~----------------- 109 (713)
|.+|+++|.+++||+++......|.+ +++. | ..+..
T Consensus 126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~ 205 (368)
T 1mda_H 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ 205 (368)
T ss_dssp TTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred cceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEE
Confidence 99999999999999997642214444 2220 0 00000
Q ss_pred -----------------------------EEeC---------CC-----------CCCee---EEEeCCCCeEEEEcC--
Q psy6570 110 -----------------------------LVDN---------NI-----------QWPTG---ITIDYPSQRLYWADP-- 135 (713)
Q Consensus 110 -----------------------------l~~~---------~~-----------~~p~g---lavd~~~~~LY~~d~-- 135 (713)
++.. .+ ..|.+ ++++++.++||++..
T Consensus 206 ~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~ 285 (368)
T 1mda_H 206 CTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH 285 (368)
T ss_dssp SCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred eeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccc
Confidence 0000 00 02344 788888888998754
Q ss_pred -C-----CCcEEEEeCCCCceeEEEecCCCCccceeeeee--CCeEEEEeC-CCCcEEEEcccCCCcceeeecccccccc
Q psy6570 136 -K-----ARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF--EDNLYFSTY-RTNNILKINKFGNSDFNVLANNLNRASD 206 (713)
Q Consensus 136 -~-----~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~--~~~ly~td~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 206 (713)
+ .+.+..+|+....+...+.. ...|.+|++. +.+||++.. ..+.|..++.........+..+ ..|.+
T Consensus 286 ~~~~~~~~~~~~ViD~~t~~vv~~i~v---g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg-~~P~~ 361 (368)
T 1mda_H 286 SRSCLAAAENTSSVTASVGQTSGPISN---GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD-KGPES 361 (368)
T ss_dssp SSCTTSCEEEEEEEESSSCCEEECCEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC-SCCCE
T ss_pred cCcccccCCCEEEEECCCCeEEEEEEC---CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC-CCCCE
Confidence 2 23556777655432221111 2367888775 457999988 6899999998776665555433 55666
Q ss_pred EEE
Q psy6570 207 VLI 209 (713)
Q Consensus 207 i~v 209 (713)
|.+
T Consensus 362 i~~ 364 (368)
T 1mda_H 362 LSV 364 (368)
T ss_dssp EEC
T ss_pred EEe
Confidence 644
|
| >1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* | Back alignment and structure |
|---|
Probab=98.64 E-value=4.6e-09 Score=98.24 Aligned_cols=73 Identities=27% Similarity=0.729 Sum_probs=29.3
Q ss_pred CCCCCCCCCCCcEEcCCCCCeeccCCCCCCCCCCcccCCCCCCCCCC-CCCCC--CCCCCCcEEeecCCCceeeCCCCCc
Q psy6570 506 KKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLA-NKCTP--NYCSNNGTCVLIEGKPSCKCLPPYS 582 (713)
Q Consensus 506 ~~C~~~~C~~~g~C~~~~~~~~C~C~~g~~G~~C~~~~~~~~c~~~~-~~C~~--~~C~~~~~C~~~~g~~~C~C~~G~~ 582 (713)
+.|...||.++|+|++..++|+|.|++||+|..|+.. + ++|.. .+|.+ +|++..|+|+|.|++||+
T Consensus 43 deC~~~pC~ngg~C~n~~g~y~C~C~~Gf~G~~Ce~~---------i~deC~~~~~~C~~--~C~n~~gsy~C~C~~Gy~ 111 (195)
T 1nfu_B 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF---------TRKLCSLDNGDCDQ--FCHEEQNSVVCSCARGYT 111 (195)
T ss_dssp -----------------------------------------------CCGGGTGGGGCSS--EEEEETTEEEEECCTTEE
T ss_pred cccCCCCCCCCCEeECCCCCeeEeCCCCceecccccc---------ccccccCCCCCCCC--EeECCCCCeEEECCCCce
Confidence 5677789999999999999999999999999999854 3 56875 35754 999999999999999999
Q ss_pred ----CCCCCcC
Q psy6570 583 ----GKQCTER 589 (713)
Q Consensus 583 ----G~~C~~~ 589 (713)
|..|+..
T Consensus 112 l~~dG~~C~~~ 122 (195)
T 1nfu_B 112 LADNGKACIPT 122 (195)
T ss_dssp ECTTSSCEEES
T ss_pred eCCCCCccccC
Confidence 8889865
|
| >1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-08 Score=82.94 Aligned_cols=67 Identities=27% Similarity=0.713 Sum_probs=53.6
Q ss_pred CCCCCCC--CCCCcEEcCCCCCeeccCCCCCC-----CCCCcccCCCCCCCCCCCCCCCCC--CCCCcEEeecCCCceee
Q psy6570 506 KKCDTCT--CLNGGTCIPNSKNNVCKCPSQYT-----GRRCECAVGDTSCASLANKCTPNY--CSNNGTCVLIEGKPSCK 576 (713)
Q Consensus 506 ~~C~~~~--C~~~g~C~~~~~~~~C~C~~g~~-----G~~C~~~~~~~~c~~~~~~C~~~~--C~~~~~C~~~~g~~~C~ 576 (713)
++|...+ |.+ ++|+++.++|+|.|++||+ |..|+ + +++|...+ |. +++|+++.|+|+|.
T Consensus 4 deC~~~~~~C~~-g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~-d---------ideC~~~~~~C~-~~~C~n~~g~y~C~ 71 (86)
T 1lmj_A 4 DECRISPDLCGR-GQCVNTPGDFECKCDEGYESGFMMMKNCM-D---------IDECQRDPLLCR-GGVCHNTEGSYRCE 71 (86)
T ss_dssp CTTTTCSSTTTT-SCEEEETTEEEECCCSSEEECTTTSSSEE-E---------CCHHHHCSSTTT-TSEEEEETTEEEEE
T ss_pred ccccCCCCCCCC-CEEECCCCCEEeeCCCCcCccCCCCCccC-C---------cccccCCCCcCC-CCEeEcCCCCEEEE
Confidence 3455434 865 5999999999999999998 56665 2 57887655 75 58999999999999
Q ss_pred CCCCCcCC
Q psy6570 577 CLPPYSGK 584 (713)
Q Consensus 577 C~~G~~G~ 584 (713)
|++||++.
T Consensus 72 C~~G~~~~ 79 (86)
T 1lmj_A 72 CPPGHQLS 79 (86)
T ss_dssp SCTTSCCC
T ss_pred CcCCcccC
Confidence 99999875
|
| >2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A | Back alignment and structure |
|---|
Probab=98.63 E-value=7.6e-09 Score=87.32 Aligned_cols=76 Identities=24% Similarity=0.521 Sum_probs=35.2
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCCCCCCC--CCCCCcEEeecCCCceeeCCCCCcC---CCCCcCCCCCCCC--CCCCCC
Q psy6570 530 CPSQYTGRRCECAVGDTSCASLANKCTPN--YCSNNGTCVLIEGKPSCKCLPPYSG---KQCTEREDSPSCH--NYCDNA 602 (713)
Q Consensus 530 C~~g~~G~~C~~~~~~~~c~~~~~~C~~~--~C~~~~~C~~~~g~~~C~C~~G~~G---~~C~~~~~~~~C~--~~C~~~ 602 (713)
...+|.|..|+ +++|..+ .|. ++|+++.++|+|.|++||+| ..|+++ ++|. .+|.
T Consensus 18 ~~~~~~~~~Cd-----------~neC~~~~~~C~--~~C~n~~g~y~C~C~~Gy~g~~g~~C~di---deC~~~~~C~-- 79 (107)
T 2w2n_E 18 TENLYFQGAMG-----------TNECLDNNGGCS--YVCNDLKIGYECLCPDGFQLVAQRRCEDI---DECQDPDTCS-- 79 (107)
T ss_dssp --CCCCSCCBS-----------CCGGGTGGGGCS--SEEECCSBSCEEECCTTCEEETTTEEEC----------------
T ss_pred cCCCcCCCCCc-----------CccCcCCCCCCC--CEeEeCCCCeEEECCCCccccCCCccccc---cccCCCCCcC--
Confidence 34678888775 4677643 463 58999999999999999997 789855 8883 6786
Q ss_pred CeEecCCCCcceeecCCCcccC
Q psy6570 603 GLCSYSKQGKPVCTCVNGWSGI 624 (713)
Q Consensus 603 g~C~~~~~g~~~C~C~~G~~G~ 624 (713)
++|++.. ++|.|.|++||++.
T Consensus 80 ~~C~n~~-gsy~C~C~~Gy~~~ 100 (107)
T 2w2n_E 80 QLCVNLE-GGYKCQCEEGFQLD 100 (107)
T ss_dssp ----------------------
T ss_pred CeeecCC-CCEEEECCCCceEC
Confidence 6999886 99999999999864
|
| >2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... | Back alignment and structure |
|---|
Probab=98.62 E-value=7.1e-09 Score=91.79 Aligned_cols=73 Identities=27% Similarity=0.737 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCcEEcCCCCCeeccCCCCCCCCCCcccCCCCCCCCCC-CCCCCC--CCCCCcEEeecCCCceeeCCCCCc
Q psy6570 506 KKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLA-NKCTPN--YCSNNGTCVLIEGKPSCKCLPPYS 582 (713)
Q Consensus 506 ~~C~~~~C~~~g~C~~~~~~~~C~C~~g~~G~~C~~~~~~~~c~~~~-~~C~~~--~C~~~~~C~~~~g~~~C~C~~G~~ 582 (713)
+.|...||.++++|++..++|+|.|++||+|..|+.. + ++|... +|.+ +|+++.|+|+|.|++||+
T Consensus 43 d~C~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~~---------i~d~C~~~~~~C~~--~C~~~~g~y~C~C~~Gy~ 111 (134)
T 2vh0_B 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF---------TRKLCSLDNGDCDQ--FCHEEQNSVVCSCARGYT 111 (134)
T ss_dssp -----------------------------------------------CCGGGTGGGGCSS--EEEEETTEEEEECCTTEE
T ss_pred CcCCCCCCCCcCCcccCCCCEEeeCCCCccCCccccC---------CCCccccCCCCCCC--EeECCCCCEEEECCCCcE
Confidence 4677778999999999999999999999999999853 3 567653 5654 999999999999999999
Q ss_pred ----CCCCCcC
Q psy6570 583 ----GKQCTER 589 (713)
Q Consensus 583 ----G~~C~~~ 589 (713)
|..|++.
T Consensus 112 l~~~g~~C~~~ 122 (134)
T 2vh0_B 112 LADNGKACIPT 122 (134)
T ss_dssp ECTTSSCEEES
T ss_pred ECCCCCccCcC
Confidence 8888765
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-06 Score=89.14 Aligned_cols=162 Identities=9% Similarity=-0.009 Sum_probs=107.9
Q ss_pred ecC-CCCCceEEEeccCCeEEEeecCC---------CCCCeEEEEecCC---ceEEEEEcCC-----CCCcceEEEcCC-
Q psy6570 22 LSN-LHDPRGVAVDWVGKNLYWTDAGG---------RSSNNIMVSTLEG---RKKRTLLNTG-----LNEPYDIALEPL- 82 (713)
Q Consensus 22 ~~~-~~~p~gla~D~~~~~ly~td~~~---------~~~~~I~~~~~~G---~~~~~l~~~~-----~~~p~~iavD~~- 82 (713)
+.+ ...|+.|++++ ++.+|.+-..- ...++|++++++. +..+..+... .-+|.||.+.+.
T Consensus 45 i~~~~~G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~ 123 (355)
T 3sre_A 45 VKGIDNGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD 123 (355)
T ss_dssp CTTCCSCCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECT
T ss_pred eCCCCCCcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECC
Confidence 455 46799999997 68999985100 1368899999973 3333222221 248999999652
Q ss_pred --CCcEEEEccCC-CCeEEEEecCCC-CcEEEEe----CCCCCCeeEEEeCCCCeEEEEcC-----------------CC
Q psy6570 83 --SGRMFWTELGI-KPRISGASIDGK-NKFNLVD----NNIQWPTGITIDYPSQRLYWADP-----------------KA 137 (713)
Q Consensus 83 --~~~ly~td~~~-~~~I~~~~~dG~-~~~~l~~----~~~~~p~glavd~~~~~LY~~d~-----------------~~ 137 (713)
+.+||+.+... ..+|+.++++-. ...+++. ..+..|+.+++|+ .+++|+++. ..
T Consensus 124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~ 202 (355)
T 3sre_A 124 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAW 202 (355)
T ss_dssp TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred CCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCc
Confidence 34799998762 346666555432 2333332 3578999999995 578777753 24
Q ss_pred CcEEEEeCCCCceeEEEecCCCCccceeeeee--CCeEEEEeCCCCcEEEEcccC
Q psy6570 138 RTIESINLNGKDRFVVYHTEDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKFG 190 (713)
Q Consensus 138 ~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~ 190 (713)
++|++++.. ..+++... +..|.||++. +..||++|...++|++++...
T Consensus 203 g~vyr~d~~--~~~~~~~~---l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 203 SFVTYYSPN--DVRVVAEG---FDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEEECTT--CCEEEEEE---ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cEEEEEECC--eEEEeecC---CcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 678888873 44455544 5567777765 668999999999999998653
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.9e-06 Score=85.49 Aligned_cols=183 Identities=11% Similarity=0.042 Sum_probs=126.8
Q ss_pred CcccCCceeEEEccCcccEE-ecC--CCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEE
Q psy6570 2 ASISSGNVTRVKREMNLKTV-LSN--LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIA 78 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~~~~-~~~--~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia 78 (713)
++..+++|+.+++.+.+.+- +.. ...++++++++. ++||++. .+.|..++++|+.+..+.......+..++
T Consensus 10 ~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pd-G~ilvs~-----~~~V~~~d~~G~~~W~~~~~~~~~~~~~~ 83 (276)
T 3no2_A 10 GGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKA-GEILFSY-----SKGAKMITRDGRELWNIAAPAGCEMQTAR 83 (276)
T ss_dssp ECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTT-SCEEEEC-----BSEEEEECTTSCEEEEEECCTTCEEEEEE
T ss_pred eeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCC-CCEEEeC-----CCCEEEECCCCCEEEEEcCCCCccccccE
Confidence 45678899999984432221 222 146899999976 5666643 46799999998876665432223455677
Q ss_pred EcCCCCcEEEEccC-CCCeEEEEecCCCCcEEEEeC-C----CCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeE
Q psy6570 79 LEPLSGRMFWTELG-IKPRISGASIDGKNKFNLVDN-N----IQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFV 152 (713)
Q Consensus 79 vD~~~~~ly~td~~-~~~~I~~~~~dG~~~~~l~~~-~----~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~ 152 (713)
+.+ +|.+++++.+ .. +|+.++.+|+....+-.. . ...|.++++++ ++.+++++...++|..++.+|..+-.
T Consensus 84 ~~~-dG~~lv~~~~~~~-~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~G~~~w~ 160 (276)
T 3no2_A 84 ILP-DGNALVAWCGHPS-TILEVNMKGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPNGQLLNS 160 (276)
T ss_dssp ECT-TSCEEEEEESTTE-EEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTTSCEEEE
T ss_pred ECC-CCCEEEEecCCCC-EEEEEeCCCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCCCCEEEE
Confidence 774 7888888876 55 899999999876655421 1 23577888885 56777889889999999999765544
Q ss_pred EEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceee
Q psy6570 153 VYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVL 197 (713)
Q Consensus 153 ~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~ 197 (713)
+... ..|+++.+. ++.+++++...++|+.+++.++..+-.+
T Consensus 161 ~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~ 202 (276)
T 3no2_A 161 VKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV 202 (276)
T ss_dssp EECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred EECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence 4332 356666665 6789999888889999998866554444
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.3e-06 Score=90.70 Aligned_cols=186 Identities=14% Similarity=0.098 Sum_probs=127.6
Q ss_pred ccCCceeEEEccCccc--EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcC
Q psy6570 4 ISSGNVTRVKREMNLK--TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEP 81 (713)
Q Consensus 4 ~~~~~I~~~~~~~~~~--~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~ 81 (713)
..++.|..+++++... .+......|.++++++.++.||++.. ..+.|.+.+++.......+.. ...|.+++++|
T Consensus 188 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~ 263 (433)
T 3bws_A 188 MQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNW---ISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSK 263 (433)
T ss_dssp GGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEET---TTTEEEEEETTTTEEEEECCC-CSEEEEEEECT
T ss_pred CCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEec---CCCcEEEEECCCCcEEEEecC-CCCceEEEEcC
Confidence 3457788888776432 22334567899999999899999987 678999999875544333322 35689999999
Q ss_pred CCCcEEEEccCC------CCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEe
Q psy6570 82 LSGRMFWTELGI------KPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYH 155 (713)
Q Consensus 82 ~~~~ly~td~~~------~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~ 155 (713)
.+++||++.... .+.|.+.++........+. ....|.++++++.+++||++....++|..++++.........
T Consensus 264 ~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~ 342 (433)
T 3bws_A 264 DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP 342 (433)
T ss_dssp TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec
Confidence 877888877532 3378888887554333332 123688999998888999999889999999998654433333
Q ss_pred cCCCCccceeeeee--CCeEEEEeCCC--------------CcEEEEcccCCCcceee
Q psy6570 156 TEDNGYKPYKLEVF--EDNLYFSTYRT--------------NNILKINKFGNSDFNVL 197 (713)
Q Consensus 156 ~~~~~~~p~~i~~~--~~~ly~td~~~--------------~~i~~~~~~~~~~~~~~ 197 (713)
. ...+.++++. +..||++.... +.|+.++...+.....+
T Consensus 343 ~---~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~ 397 (433)
T 3bws_A 343 V---FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW 397 (433)
T ss_dssp C---SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred C---CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence 2 3456677765 45688887653 37888876555444333
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=2e-06 Score=90.55 Aligned_cols=160 Identities=15% Similarity=0.059 Sum_probs=102.6
Q ss_pred CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEec--CCceEEEEEcCCCCCcceEEEcCCCCc--EEEEc------cC-
Q psy6570 24 NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTL--EGRKKRTLLNTGLNEPYDIALEPLSGR--MFWTE------LG- 92 (713)
Q Consensus 24 ~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~--~G~~~~~l~~~~~~~p~~iavD~~~~~--ly~td------~~- 92 (713)
....|..|++++.++.||+++. . .|.++++ +|+...+........|..++++|.+++ ||.++ .+
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~---~--~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 112 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAM---K--KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYAN 112 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEB---T--EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEcc---c--eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccc
Confidence 4458999999999888999987 4 7777776 454433222111235889999987664 34444 11
Q ss_pred ----CCCeEEEEecC--CCCcEEEEe---CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCC-CCceeEEEecC--CCC
Q psy6570 93 ----IKPRISGASID--GKNKFNLVD---NNIQWPTGITIDYPSQRLYWADPKARTIESINLN-GKDRFVVYHTE--DNG 160 (713)
Q Consensus 93 ----~~~~I~~~~~d--G~~~~~l~~---~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~-g~~~~~~~~~~--~~~ 160 (713)
..+.|...+++ |.....+.. .....|.++++++++++||+++...++|+.++++ ......+.... ...
T Consensus 113 ~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 113 PFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp EESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred eeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 22255555554 543333321 2356799999999988999999888899999986 33333222211 013
Q ss_pred ccceeeeee--CCeEEEEeCCCCcEEEEcc
Q psy6570 161 YKPYKLEVF--EDNLYFSTYRTNNILKINK 188 (713)
Q Consensus 161 ~~p~~i~~~--~~~ly~td~~~~~i~~~~~ 188 (713)
..|.++++. +.+||+++...+.|..++.
T Consensus 193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~ 222 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVI 222 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCCEeEECCCCCEEEEEECCCCeEEEEEE
Confidence 457777765 5589998877777766543
|
| >2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-08 Score=86.27 Aligned_cols=71 Identities=30% Similarity=0.620 Sum_probs=27.6
Q ss_pred CccCCCCCCCCCCCC-----cEEcCCCCCeeccCCCCCCC---CCCcccCCCCCCCCCCCCCCC-CCCCCCcEEeecCCC
Q psy6570 502 GYSGKKCDTCTCLNG-----GTCIPNSKNNVCKCPSQYTG---RRCECAVGDTSCASLANKCTP-NYCSNNGTCVLIEGK 572 (713)
Q Consensus 502 G~~g~~C~~~~C~~~-----g~C~~~~~~~~C~C~~g~~G---~~C~~~~~~~~c~~~~~~C~~-~~C~~~~~C~~~~g~ 572 (713)
||.++.|+..+|..+ ++|++..++|+|.|++||+| ..|+ + +++|.. .+|. ++|+++.|+
T Consensus 21 ~~~~~~Cd~neC~~~~~~C~~~C~n~~g~y~C~C~~Gy~g~~g~~C~-d---------ideC~~~~~C~--~~C~n~~gs 88 (107)
T 2w2n_E 21 LYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCE-D---------IDECQDPDTCS--QLCVNLEGG 88 (107)
T ss_dssp CCCSCCBSCCGGGTGGGGCSSEEECCSBSCEEECCTTCEEETTTEEE-C-------------------------------
T ss_pred CcCCCCCcCccCcCCCCCCCCEeEeCCCCeEEECCCCccccCCCccc-c---------ccccCCCCCcC--CeeecCCCC
Confidence 444444444444321 38999999999999999998 6676 2 678873 6785 799999999
Q ss_pred ceeeCCCCCcCC
Q psy6570 573 PSCKCLPPYSGK 584 (713)
Q Consensus 573 ~~C~C~~G~~G~ 584 (713)
|+|.|++||.+.
T Consensus 89 y~C~C~~Gy~~~ 100 (107)
T 2w2n_E 89 YKCQCEEGFQLD 100 (107)
T ss_dssp ------------
T ss_pred EEEECCCCceEC
Confidence 999999999864
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.58 E-value=1.7e-06 Score=90.46 Aligned_cols=203 Identities=12% Similarity=0.098 Sum_probs=117.3
Q ss_pred CCceeEEEccCcccE-EecCCCCCceEEEeccCCeEEEeecCC------CCCCeEEEEecCCceEE-EEEcCC------C
Q psy6570 6 SGNVTRVKREMNLKT-VLSNLHDPRGVAVDWVGKNLYWTDAGG------RSSNNIMVSTLEGRKKR-TLLNTG------L 71 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~-~~~~~~~p~gla~D~~~~~ly~td~~~------~~~~~I~~~~~~G~~~~-~l~~~~------~ 71 (713)
.++|+.+|..+.+.+ .+.....|. |++++.+++||++++.. ...+.|.++|....... .+.... .
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g 136 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVG 136 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred CCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccC
Confidence 578888888765422 144455685 99999999999998410 02456999998765533 332111 2
Q ss_pred CCcceEEEcCCCCcEEEEccC-CCCeEEEEecCCCCcE----------------------------EEEeC-C-------
Q psy6570 72 NEPYDIALEPLSGRMFWTELG-IKPRISGASIDGKNKF----------------------------NLVDN-N------- 114 (713)
Q Consensus 72 ~~p~~iavD~~~~~ly~td~~-~~~~I~~~~~dG~~~~----------------------------~l~~~-~------- 114 (713)
..|.+|+++|..++||+++.. .+ .|.++++...... .++.. .
T Consensus 137 ~~P~~~a~spDGk~lyVan~~~~~-~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~ 215 (386)
T 3sjl_D 137 TYPWMTSLTPDGKTLLFYQFSPAP-AVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT 215 (386)
T ss_dssp CCGGGEEECTTSSEEEEEECSSSC-EEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEE
T ss_pred CCCceEEEcCCCCEEEEEEcCCCC-eEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEe
Confidence 479999999999999999754 33 5555544322111 00100 0
Q ss_pred ---CC----CCe--eEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecC--------C----CCccceeeeeeCCeE
Q psy6570 115 ---IQ----WPT--GITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTE--------D----NGYKPYKLEVFEDNL 173 (713)
Q Consensus 115 ---~~----~p~--glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~--------~----~~~~p~~i~~~~~~l 173 (713)
+. .|. .++++...+++||... .++|+.+++.+...+++.... . ....+++++-+.++|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~-~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~l 294 (386)
T 3sjl_D 216 HTEVFHPEDEFLINHPAYSQKAGRLVWPTY-TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRI 294 (386)
T ss_dssp ECCCCSCTTSCBCSCCEEETTTTEEEEEBT-TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEE
T ss_pred ecceeccccccccccceeEcCCCcEEEEeC-CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeE
Confidence 00 111 1344444555555333 467888887766544332211 0 122346666668899
Q ss_pred EEEeC---------CCCcEEEEcccCCCcceeeeccccccccEEEEee
Q psy6570 174 YFSTY---------RTNNILKINKFGNSDFNVLANNLNRASDVLILQE 212 (713)
Q Consensus 174 y~td~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~ 212 (713)
|++.. ..++|+.++.........+..+ ..+.+|.+...
T Consensus 295 yV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D 341 (386)
T 3sjl_D 295 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQD 341 (386)
T ss_dssp EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSS
T ss_pred EEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCC
Confidence 99863 2367999988776665555443 23445555443
|
| >1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.5e-08 Score=80.95 Aligned_cols=68 Identities=26% Similarity=0.688 Sum_probs=55.1
Q ss_pred CCCCCCC--CCCCcEEcCCCCCeeccCCCCCC----CCCCcccCCCCCCCCCCCCCCCCCCCCCcEEeecCCCceeeCCC
Q psy6570 506 KKCDTCT--CLNGGTCIPNSKNNVCKCPSQYT----GRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLP 579 (713)
Q Consensus 506 ~~C~~~~--C~~~g~C~~~~~~~~C~C~~g~~----G~~C~~~~~~~~c~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~ 579 (713)
++|...+ | ++++|+++.++|+|.|++||+ |..|+ + +++|..++|. ++|+++.|+|+|.|+
T Consensus 4 deC~~~~~~C-~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~-d---------ideC~~~~C~--~~C~n~~g~y~C~C~- 69 (87)
T 1z6c_A 4 DECSLKPSIC-GTAVCKNIPGDFECECPEGYRYNLKSKSCE-D---------IDECSENMCA--QLCVNYPGGYTCYCD- 69 (87)
T ss_dssp CSSSSSSSSB-TTSSCCCBTTBCCCSSSTTCEEETTTTEEE-C---------CCHHHHSCCS--SEECCCSSSCCEECC-
T ss_pred ccccCCCCCC-CCCEeECCCCCEEEECCCCceECCCCCcCC-C---------cCeeCCCCCC--CEEEccCCCEEEECC-
Confidence 3455445 8 778999999999999999998 66775 2 6789888896 799999999999997
Q ss_pred CCcCCCCC
Q psy6570 580 PYSGKQCT 587 (713)
Q Consensus 580 G~~G~~C~ 587 (713)
||.|..+.
T Consensus 70 g~~G~~~~ 77 (87)
T 1z6c_A 70 GKKGFKLA 77 (87)
T ss_dssp SSSCCBCC
T ss_pred CCcCCccc
Confidence 66666554
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.54 E-value=8e-06 Score=84.04 Aligned_cols=183 Identities=9% Similarity=0.034 Sum_probs=114.7
Q ss_pred ccCCceeEEEccCcccEE-ecCCC------CCceEEEeccCCeEEEeecCC-----C---CCCeEEEEecCCceEEEEEc
Q psy6570 4 ISSGNVTRVKREMNLKTV-LSNLH------DPRGVAVDWVGKNLYWTDAGG-----R---SSNNIMVSTLEGRKKRTLLN 68 (713)
Q Consensus 4 ~~~~~I~~~~~~~~~~~~-~~~~~------~p~gla~D~~~~~ly~td~~~-----~---~~~~I~~~~~~G~~~~~l~~ 68 (713)
...+.|..+++.+...+. +.... .|.++++++.++.||+++.+. . ..+.|.++++++......+.
T Consensus 53 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 132 (337)
T 1pby_B 53 NKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132 (337)
T ss_dssp TTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE
T ss_pred CCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe
Confidence 345678888877643221 22222 799999999888999996210 0 13789999987655444443
Q ss_pred CCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEE-------------------------------------
Q psy6570 69 TGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLV------------------------------------- 111 (713)
Q Consensus 69 ~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~------------------------------------- 111 (713)
. ...|.+|+++|..++||+++ . .|++.+++.......+
T Consensus 133 ~-~~~~~~~~~s~dg~~l~~~~---~-~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 207 (337)
T 1pby_B 133 A-PRQITMLAWARDGSKLYGLG---R-DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARK 207 (337)
T ss_dssp C-CSSCCCEEECTTSSCEEEES---S-SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBT
T ss_pred C-CCCcceeEECCCCCEEEEeC---C-eEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccc
Confidence 3 35799999999888898883 1 4555554432111111
Q ss_pred -----------------e------------CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 112 -----------------D------------NNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 112 -----------------~------------~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
. .....|.+|++++++++||++ .+.|+.++++.......... ...
T Consensus 208 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~v~~~d~~~~~~~~~~~~---~~~ 281 (337)
T 1pby_B 208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASIKRVPL---PHS 281 (337)
T ss_dssp TSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ESEEEEEETTTTEEEEEEEC---SSC
T ss_pred ccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe---CCeEEEEECCCCcCcceecC---CCc
Confidence 0 011245678999888889988 47899999876544333322 235
Q ss_pred ceeeeee--CCeEEEEeCCCCcEEEEcccCCCcceeee
Q psy6570 163 PYKLEVF--EDNLYFSTYRTNNILKINKFGNSDFNVLA 198 (713)
Q Consensus 163 p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~~~~~~ 198 (713)
|.++++. +.+||++ ...+.|..++..++.....+.
T Consensus 282 ~~~~~~s~dg~~l~~~-~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 282 YYSVNVSTDGSTVWLG-GALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp CCEEEECTTSCEEEEE-SBSSEEEEEETTTCCEEEEEE
T ss_pred eeeEEECCCCCEEEEE-cCCCcEEEEECcCCcEEEEEE
Confidence 6667665 4567777 456788888876665544443
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=5.7e-06 Score=91.97 Aligned_cols=179 Identities=7% Similarity=-0.002 Sum_probs=121.1
Q ss_pred CCceeEEEc--cCccc-EEecCCCCCceEEEec----cCCeEEEeecCCCCCCeEEEEecCCceEEEEEcC-C-------
Q psy6570 6 SGNVTRVKR--EMNLK-TVLSNLHDPRGVAVDW----VGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNT-G------- 70 (713)
Q Consensus 6 ~~~I~~~~~--~~~~~-~~~~~~~~p~gla~D~----~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~-~------- 70 (713)
.+.|..+++ .+... ..+.....|++|+|++ .++.||+++. ..+.|.+++.........+.. +
T Consensus 199 d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~---~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 199 DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY---WPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE---ESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred CCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEc---cCCeEEEEeccccccceeecccCcccCccc
Confidence 377888888 43221 1244556799999999 8899999987 578899988765443333322 1
Q ss_pred ---CCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEE--EEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeC
Q psy6570 71 ---LNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFN--LVDNNIQWPTGITIDYPSQRLYWADPKARTIESINL 145 (713)
Q Consensus 71 ---~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~--l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~ 145 (713)
-.++.+|++.+.++.+|++..... +|+.+++....... .+. .-..|.+++|++++++||++....+.|..+++
T Consensus 276 ~~~~~~v~~i~~s~~~~~~~vs~~~~g-~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~ 353 (543)
T 1nir_A 276 YHPEPRVAAIIASHEHPEFIVNVKETG-KVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDS 353 (543)
T ss_dssp EESCCCEEEEEECSSSSEEEEEETTTT-EEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred cccCCceEEEEECCCCCEEEEEECCCC-eEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEEC
Confidence 125778999988888999887666 99999886533222 222 34579999999998899999888889999998
Q ss_pred CCCceeEEEecCCCCccc-eeeee-e--CCeEEEEeC-CCCcEEEEcccC
Q psy6570 146 NGKDRFVVYHTEDNGYKP-YKLEV-F--EDNLYFSTY-RTNNILKINKFG 190 (713)
Q Consensus 146 ~g~~~~~~~~~~~~~~~p-~~i~~-~--~~~ly~td~-~~~~i~~~~~~~ 190 (713)
........+... ..++| .++.+ + .+.+|++.. ..+.|..++...
T Consensus 354 ~tg~l~~~i~~g-~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 354 KDRRLSALVDVG-KTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp TTTEEEEEEECS-SSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CCCeEEEeeccC-CCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCC
Confidence 655433333322 12343 23333 2 467888765 457788787654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.53 E-value=2.6e-06 Score=89.52 Aligned_cols=86 Identities=13% Similarity=0.020 Sum_probs=58.9
Q ss_pred CCceeEEEccCcccE-EecCCCCCceEEEeccCCeEEEeecCC------CCCCeEEEEecCCc-eEEEEEcC-----CCC
Q psy6570 6 SGNVTRVKREMNLKT-VLSNLHDPRGVAVDWVGKNLYWTDAGG------RSSNNIMVSTLEGR-KKRTLLNT-----GLN 72 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~-~~~~~~~p~gla~D~~~~~ly~td~~~------~~~~~I~~~~~~G~-~~~~l~~~-----~~~ 72 (713)
++.|++++..+.+.+ .+.....| +|++++.+++||+++... ...+.|.++++... ....+... ...
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~ 108 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLN 108 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCC
T ss_pred cCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCC
Confidence 568889987654322 24444568 999999999999997410 02356899998653 33333211 135
Q ss_pred CcceEEEcCCCCcEEEEccC
Q psy6570 73 EPYDIALEPLSGRMFWTELG 92 (713)
Q Consensus 73 ~p~~iavD~~~~~ly~td~~ 92 (713)
.|.+|+++|..++||+++..
T Consensus 109 ~p~~i~~spdg~~l~v~n~~ 128 (361)
T 2oiz_A 109 YDGLFRQTTDGKFIVLQNAS 128 (361)
T ss_dssp CGGGEEECTTSSEEEEEEES
T ss_pred CcceEEECCCCCEEEEECCC
Confidence 79999999999999998754
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-05 Score=83.58 Aligned_cols=139 Identities=13% Similarity=0.032 Sum_probs=93.7
Q ss_pred CcccCCceeEEEccCcccE-EecCCC--CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCC------CC
Q psy6570 2 ASISSGNVTRVKREMNLKT-VLSNLH--DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG------LN 72 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~~~-~~~~~~--~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~------~~ 72 (713)
+....++|+.+++.+...+ .+..-. .|.++++++.++.||++.. ..+.|.++++++......+... ..
T Consensus 16 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~ 92 (349)
T 1jmx_B 16 VTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLSSVPGEVGR 92 (349)
T ss_dssp EEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESCCSTTEEEE
T ss_pred EeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC---CCCcEEEEeCCCCcEEEEEEcccccccccc
Confidence 3445788899998764322 223223 6999999998888999987 6789999998765443333221 23
Q ss_pred CcceEEEcCCCCcEEEEccC-----------CCCeEEEEecCCC---CcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCC
Q psy6570 73 EPYDIALEPLSGRMFWTELG-----------IKPRISGASIDGK---NKFNLVDNNIQWPTGITIDYPSQRLYWADPKAR 138 (713)
Q Consensus 73 ~p~~iavD~~~~~ly~td~~-----------~~~~I~~~~~dG~---~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~ 138 (713)
.|.+|+++|.+++||++... .. .|.+.++... .....+. .-..+.+|++++++. ||+++ .
T Consensus 93 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~---~ 166 (349)
T 1jmx_B 93 SMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP-RLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG---P 166 (349)
T ss_dssp CSSCEEECTTSSEEEEEEEEEEECSSCEEECCC-EEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES---S
T ss_pred cccceEECCCCCEEEEEcccccccccccccCCC-eEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEcc---C
Confidence 48999999988889998743 34 8999988752 2222222 223578899998766 88864 3
Q ss_pred cEEEEeCCCCc
Q psy6570 139 TIESINLNGKD 149 (713)
Q Consensus 139 ~I~~~~~~g~~ 149 (713)
.|+.+++....
T Consensus 167 ~i~~~d~~~~~ 177 (349)
T 1jmx_B 167 DIYKMDVKTGK 177 (349)
T ss_dssp SEEEECTTTCC
T ss_pred cEEEEeCCCCc
Confidence 48888875443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.49 E-value=3.3e-06 Score=92.17 Aligned_cols=186 Identities=13% Similarity=0.085 Sum_probs=125.8
Q ss_pred CcccCCceeEEEccCcc--cEE-ecCCCCCceEEEe--ccCCeEEEeecCC--------------CCCCeEEEEecCCce
Q psy6570 2 ASISSGNVTRVKREMNL--KTV-LSNLHDPRGVAVD--WVGKNLYWTDAGG--------------RSSNNIMVSTLEGRK 62 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~--~~~-~~~~~~p~gla~D--~~~~~ly~td~~~--------------~~~~~I~~~~~~G~~ 62 (713)
+|..+++|.+|+++..+ +++ +.....|+|+++. +.++.||++.... ...+.|.++|.+...
T Consensus 107 nd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~ 186 (595)
T 1fwx_A 107 NDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWE 186 (595)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTE
T ss_pred EcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCe
Confidence 45668899999999854 222 4455779999984 7899999984210 034578888888644
Q ss_pred EEEEEcCCCCCcceEEEcCCCCcEEEEccCCCC------------------------------------eEEEEecCC--
Q psy6570 63 KRTLLNTGLNEPYDIALEPLSGRMFWTELGIKP------------------------------------RISGASIDG-- 104 (713)
Q Consensus 63 ~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~------------------------------------~I~~~~~dG-- 104 (713)
+..-+..+ ..|.++++++..+++|+|....+. .|.+++...
T Consensus 187 v~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~ 265 (595)
T 1fwx_A 187 VAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEA 265 (595)
T ss_dssp EEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGG
T ss_pred EEEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccC
Confidence 33222233 379999999999999999855420 133333332
Q ss_pred -CCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCc----------eeEEEecCCCCccceeeeee-CCe
Q psy6570 105 -KNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKD----------RFVVYHTEDNGYKPYKLEVF-EDN 172 (713)
Q Consensus 105 -~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~----------~~~~~~~~~~~~~p~~i~~~-~~~ 172 (713)
+.....+. --..|.|+.++|++++||+++...++|.+++++... ..++.... ....|..++++ +++
T Consensus 266 ~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~ 343 (595)
T 1fwx_A 266 SSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGN 343 (595)
T ss_dssp CCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSE
T ss_pred CceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCe
Confidence 11011111 124799999999999999999999999999987431 11232222 24578888887 459
Q ss_pred EEEEeCCCCcEEEEcccC
Q psy6570 173 LYFSTYRTNNILKINKFG 190 (713)
Q Consensus 173 ly~td~~~~~i~~~~~~~ 190 (713)
+|++....+.|.+++...
T Consensus 344 aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 344 AYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEEEETTTTEEEEEEHHH
T ss_pred EEEEEecCCcEEEEEhhH
Confidence 999999999998887643
|
| >3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-07 Score=98.11 Aligned_cols=74 Identities=26% Similarity=0.691 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCCcEEeecCCCceeeCCCCCcCCCCC-cCCCCCCCC----CCCCCCCeEecCCCCcceeecCCCcccC--
Q psy6570 552 ANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCT-EREDSPSCH----NYCDNAGLCSYSKQGKPVCTCVNGWSGI-- 624 (713)
Q Consensus 552 ~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~-~~~~~~~C~----~~C~~~g~C~~~~~g~~~C~C~~G~~G~-- 624 (713)
+++|.+++|.++++|.+..++|+|.|++||+|+.|+ +. ++|. .+|.+ .|.+.. ++|.|.|++||.|.
T Consensus 5 ~~~C~~~pC~~~g~C~~~~~~~~C~C~~g~~g~~C~~~~---~eC~~~~~~~C~~--~C~~~~-g~~~C~C~~g~~~~~~ 78 (317)
T 3h5c_B 5 GSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAK---NECHPERTDGCQH--FCLPGQ-ESYTCSCAQGYRLGED 78 (317)
T ss_dssp -CCTTSCCCTTTCCCCCCSSSCCCCCSSSCCSSSSCCCS---SSCCTTCTTSCSS--EEECCS-SSCEEECCTTEECCTT
T ss_pred CCcCCCCCCCCCCEeECCCCCeEEECCCCCcCCccccCc---ccCCCCCCCCCcC--ccccCC-CeeEEecccccccccc
Confidence 578999999999999999999999999999999998 44 7883 67976 899876 89999999999864
Q ss_pred --CCCcCCC
Q psy6570 625 --TCSERVS 631 (713)
Q Consensus 625 --~C~~~~~ 631 (713)
.|...++
T Consensus 79 ~~~C~~~~~ 87 (317)
T 3h5c_B 79 HKQCVPHDQ 87 (317)
T ss_dssp SSCCEECSS
T ss_pred ccccccccc
Confidence 4554443
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.4e-05 Score=83.07 Aligned_cols=169 Identities=12% Similarity=0.123 Sum_probs=116.9
Q ss_pred CCceeEEEccCc--ccE--E-ec-C----CCCCceEEEecc-------CCeEEEeecCCCCCCeEEEEecCCc-eEEEEE
Q psy6570 6 SGNVTRVKREMN--LKT--V-LS-N----LHDPRGVAVDWV-------GKNLYWTDAGGRSSNNIMVSTLEGR-KKRTLL 67 (713)
Q Consensus 6 ~~~I~~~~~~~~--~~~--~-~~-~----~~~p~gla~D~~-------~~~ly~td~~~~~~~~I~~~~~~G~-~~~~l~ 67 (713)
..+|..+|+.+. ..+ + ++ . ......|+||.. .+.+|++|. ....|.++++... ..+++-
T Consensus 122 ~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~---~~~gLIVydl~~~~swRv~~ 198 (381)
T 3q6k_A 122 RPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNF---LRGALFIYDHKKQDSWNVTH 198 (381)
T ss_dssp CCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEET---TTTEEEEEETTTTEEEEEEC
T ss_pred CceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcC---CCCcEEEEECCCCcEEEEcc
Confidence 457888888876 322 1 11 1 223467999921 578999999 6778999998754 444441
Q ss_pred c----C--------C-----CCCcceEEEcCC----CCcEEEEccCCCCeEEEEecC----C---CCcEEEEeCC-CCCC
Q psy6570 68 N----T--------G-----LNEPYDIALEPL----SGRMFWTELGIKPRISGASID----G---KNKFNLVDNN-IQWP 118 (713)
Q Consensus 68 ~----~--------~-----~~~p~~iavD~~----~~~ly~td~~~~~~I~~~~~d----G---~~~~~l~~~~-~~~p 118 (713)
. + + .....+||++|. .+.|||.-.... +++++..+ . ...+.+.... ....
T Consensus 199 ~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~ 277 (381)
T 3q6k_A 199 PTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDA 277 (381)
T ss_dssp GGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCE
T ss_pred CCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCc
Confidence 1 1 0 135668999987 789999987766 78888632 2 2233333332 2344
Q ss_pred eeEEEeCCCCeEEEEcCCCCcEEEEeCCC-----CceeEEEecCCCCccceeeeee-CCeEEEEeCC
Q psy6570 119 TGITIDYPSQRLYWADPKARTIESINLNG-----KDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYR 179 (713)
Q Consensus 119 ~glavd~~~~~LY~~d~~~~~I~~~~~~g-----~~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~ 179 (713)
.++++|+.++.||+++...+.|.+.+.++ .+..++.... .+..|.+|.++ +++||++...
T Consensus 278 ~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~sn~ 343 (381)
T 3q6k_A 278 IALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMSNG 343 (381)
T ss_dssp EEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSCEEEEECS
T ss_pred ceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-CccccCeEEECCCCeEEEEECc
Confidence 57889877899999999999999999987 3556777666 68899999996 6789987644
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.2e-05 Score=81.88 Aligned_cols=178 Identities=13% Similarity=0.123 Sum_probs=114.1
Q ss_pred cCCceeEEEccCcccEEecCCCCCceEEEeccCC-------eEEEeecCCCC--CCeEEEEecC--CceEEEEE------
Q psy6570 5 SSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGK-------NLYWTDAGGRS--SNNIMVSTLE--GRKKRTLL------ 67 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~~~~~~~~~p~gla~D~~~~-------~ly~td~~~~~--~~~I~~~~~~--G~~~~~l~------ 67 (713)
+.+-|..++++|+....+.. .+++++.+-+.-. .+|.++. . .++|.++++| ....+.+.
T Consensus 48 k~~gL~Vydl~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R---~~~~n~l~vf~iDp~~~~l~~i~~~~~pv 123 (355)
T 3amr_A 48 KKSGLVVYSLDGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNR---SEGKNTIEIYAIDGKNGTLQSMTDPDHPI 123 (355)
T ss_dssp TTTEEEEEETTSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEEC---STTCCEEEEEEECTTTCCEEECSCTTSCE
T ss_pred CCCCEEEEcCCCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCC---CCCCCeEEEEEECCCCCceeeccccccCc
Confidence 34667788887765444443 6778877765211 4688887 6 7888888665 33333331
Q ss_pred cCCCCCcceEEE--cCCCCc--EEEEccCCCCeEEEEec----CCCCcEEEEe--CCCCCCeeEEEeCCCCeEEEEcCCC
Q psy6570 68 NTGLNEPYDIAL--EPLSGR--MFWTELGIKPRISGASI----DGKNKFNLVD--NNIQWPTGITIDYPSQRLYWADPKA 137 (713)
Q Consensus 68 ~~~~~~p~~iav--D~~~~~--ly~td~~~~~~I~~~~~----dG~~~~~l~~--~~~~~p~glavd~~~~~LY~~d~~~ 137 (713)
...+..|.||++ ++..+. +|+++.. ++++...+ +|+....++. ..-..|.|+++|+..++||+++...
T Consensus 124 ~t~~~~pyGlcly~~~~~g~~yafV~~k~--G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~ 201 (355)
T 3amr_A 124 ATAINEVYGFTLYHSQKTGKYYAMVTGKE--GEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDE 201 (355)
T ss_dssp ECCCSSCCCEEEEECTTTCCEEEEEECSS--SEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTT
T ss_pred CCCCCCeeEEEEEecCCCCcEEEEEECCC--CeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccc
Confidence 144588999999 987775 6666654 36666444 2322223331 1234789999999999999999885
Q ss_pred CcEEEEeCCCC---ceeEEEec-CCCC-ccceeeeee-C----CeEEEEeCCCCcEEEEccc
Q psy6570 138 RTIESINLNGK---DRFVVYHT-EDNG-YKPYKLEVF-E----DNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 138 ~~I~~~~~~g~---~~~~~~~~-~~~~-~~p~~i~~~-~----~~ly~td~~~~~i~~~~~~ 189 (713)
+ ||+++.+.. .++++... ...+ ..+.||+++ . ++|++++.+.+....++..
T Consensus 202 G-Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 202 A-IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp E-EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred e-EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 5 999996532 23444332 1122 367888875 2 4799998887777777664
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.8e-06 Score=89.54 Aligned_cols=170 Identities=14% Similarity=0.039 Sum_probs=108.3
Q ss_pred CceeEEEccCcccE-EecCCCCCceEE----EeccCCeEEEeecCC---------------CCCCeEEEEecCCceEEEE
Q psy6570 7 GNVTRVKREMNLKT-VLSNLHDPRGVA----VDWVGKNLYWTDAGG---------------RSSNNIMVSTLEGRKKRTL 66 (713)
Q Consensus 7 ~~I~~~~~~~~~~~-~~~~~~~p~gla----~D~~~~~ly~td~~~---------------~~~~~I~~~~~~G~~~~~l 66 (713)
+.|..+|..+.+.+ .+.....|.+++ +.+..+.||.++++. ...++|.+++++.......
T Consensus 164 g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t 243 (462)
T 2ece_A 164 GGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS 243 (462)
T ss_dssp CEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred CeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence 66778887754322 233333454444 466778899998531 0268999999986543332
Q ss_pred EcCC--CCCcceEEE--cCCCCcEEEEcc-----CCCCeEEEEecCCCCc---EEE-EeC-----C-----------CCC
Q psy6570 67 LNTG--LNEPYDIAL--EPLSGRMFWTEL-----GIKPRISGASIDGKNK---FNL-VDN-----N-----------IQW 117 (713)
Q Consensus 67 ~~~~--~~~p~~iav--D~~~~~ly~td~-----~~~~~I~~~~~dG~~~---~~l-~~~-----~-----------~~~ 117 (713)
+..+ -..|..|++ +|..+++|++.. ... .|++...++... +++ +.. . -..
T Consensus 244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss-~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSS-SIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCE-EEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCc-eEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc
Confidence 3222 246888877 998999999886 554 787776664211 111 111 0 246
Q ss_pred CeeEEEeCCCCeEEEEcCCCCcEEEEeCC-CCceeEEEecCCC--------------Cccceeeee--eCCeEEEEe
Q psy6570 118 PTGITIDYPSQRLYWADPKARTIESINLN-GKDRFVVYHTEDN--------------GYKPYKLEV--FEDNLYFST 177 (713)
Q Consensus 118 p~glavd~~~~~LY~~d~~~~~I~~~~~~-g~~~~~~~~~~~~--------------~~~p~~i~~--~~~~ly~td 177 (713)
|.+|.|++++++||++.+..+.|..++++ ....+++..-... ...|..|++ ++.+||+++
T Consensus 323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 89999999999999999999999999985 3333433222111 014666665 578999998
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.46 E-value=8.2e-06 Score=82.14 Aligned_cols=175 Identities=11% Similarity=0.036 Sum_probs=118.6
Q ss_pred CCceeEEEccCcccEEecC--CCCCceEEEeccCCeEEEeecCCCC-CCeEEEEecCCceEEEEEcC-C----CCCcceE
Q psy6570 6 SGNVTRVKREMNLKTVLSN--LHDPRGVAVDWVGKNLYWTDAGGRS-SNNIMVSTLEGRKKRTLLNT-G----LNEPYDI 77 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~~--~~~p~gla~D~~~~~ly~td~~~~~-~~~I~~~~~~G~~~~~l~~~-~----~~~p~~i 77 (713)
.+.|+.++++++..-.... ...+.++++.+ ++++++++. . ..+|+.++.+|+.+..+... . ...|.++
T Consensus 55 ~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~---~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v 130 (276)
T 3no2_A 55 SKGAKMITRDGRELWNIAAPAGCEMQTARILP-DGNALVAWC---GHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQI 130 (276)
T ss_dssp BSEEEEECTTSCEEEEEECCTTCEEEEEEECT-TSCEEEEEE---STTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCC
T ss_pred CCCEEEECCCCCEEEEEcCCCCccccccEECC-CCCEEEEec---CCCCEEEEEeCCCCEEEEEeccCCCCcccccccCc
Confidence 3456666665432111121 12344566664 467778887 5 67899999999876655422 1 2357788
Q ss_pred EEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCC-CCceeEEEec
Q psy6570 78 ALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLN-GKDRFVVYHT 156 (713)
Q Consensus 78 avD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~-g~~~~~~~~~ 156 (713)
++++ +|.+++++.... +|..++++|+.+..+-. -..|.++++. .++.+++++...++|..++.+ |..+-.+...
T Consensus 131 ~~~~-~G~~lv~~~~~~-~v~~~d~~G~~~w~~~~--~~~~~~~~~~-~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~ 205 (276)
T 3no2_A 131 NKNK-KGNYLVPLFATS-EVREIAPNGQLLNSVKL--SGTPFSSAFL-DNGDCLVACGDAHCFVQLNLESNRIVRRVNAN 205 (276)
T ss_dssp EECT-TSCEEEEETTTT-EEEEECTTSCEEEEEEC--SSCCCEEEEC-TTSCEEEECBTTSEEEEECTTTCCEEEEEEGG
T ss_pred eECC-CCCEEEEecCCC-EEEEECCCCCEEEEEEC--CCCccceeEc-CCCCEEEEeCCCCeEEEEeCcCCcEEEEecCC
Confidence 8885 677888887766 99999999876655543 2468888887 467888998888899999998 7766555433
Q ss_pred C---CCCccceeeeee-CCeEEEEeCC----------CCcEEEEccc
Q psy6570 157 E---DNGYKPYKLEVF-EDNLYFSTYR----------TNNILKINKF 189 (713)
Q Consensus 157 ~---~~~~~p~~i~~~-~~~ly~td~~----------~~~i~~~~~~ 189 (713)
. ..+..|.++.+. ++.||++++. ..+++.+++.
T Consensus 206 ~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~ 252 (276)
T 3no2_A 206 DIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSE 252 (276)
T ss_dssp GSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTT
T ss_pred CCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCC
Confidence 1 135567888875 7899999863 3357777654
|
| >3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.44 E-value=2e-07 Score=96.15 Aligned_cols=69 Identities=30% Similarity=0.751 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCCcEEcCCCCCeeccCCCCCCCCCCcccCCCCCCCCCCCCCCC---CCCCCCcEEeecCCCceeeCCCCC
Q psy6570 505 GKKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTP---NYCSNNGTCVLIEGKPSCKCLPPY 581 (713)
Q Consensus 505 g~~C~~~~C~~~g~C~~~~~~~~C~C~~g~~G~~C~~~~~~~~c~~~~~~C~~---~~C~~~~~C~~~~g~~~C~C~~G~ 581 (713)
++.|...||.++++|.+..++|+|.|++||.|..|+.+ +++|.. ++|.+ +|++..++|+|.|++||
T Consensus 5 ~~~C~~~pC~~~g~C~~~~~~~~C~C~~g~~g~~C~~~---------~~eC~~~~~~~C~~--~C~~~~g~~~C~C~~g~ 73 (317)
T 3h5c_B 5 GSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELA---------KNECHPERTDGCQH--FCLPGQESYTCSCAQGY 73 (317)
T ss_dssp -CCTTSCCCTTTCCCCCCSSSCCCCCSSSCCSSSSCCC---------SSSCCTTCTTSCSS--EEECCSSSCEEECCTTE
T ss_pred CCcCCCCCCCCCCEeECCCCCeEEECCCCCcCCccccC---------cccCCCCCCCCCcC--ccccCCCeeEEeccccc
Confidence 46788889999999999999999999999999999855 578876 68976 99999999999999999
Q ss_pred cCC
Q psy6570 582 SGK 584 (713)
Q Consensus 582 ~G~ 584 (713)
.|.
T Consensus 74 ~~~ 76 (317)
T 3h5c_B 74 RLG 76 (317)
T ss_dssp ECC
T ss_pred ccc
Confidence 864
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-05 Score=86.56 Aligned_cols=183 Identities=11% Similarity=0.090 Sum_probs=122.9
Q ss_pred cCCceeEEEccCcccEEe-------cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceE
Q psy6570 5 SSGNVTRVKREMNLKTVL-------SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDI 77 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~~~~-------~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~i 77 (713)
..+.|..+++.+...+.. .....+.++++++ ++.+|++.. ..+.|.+.+++.......+......|..|
T Consensus 142 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~---~d~~v~~~d~~~~~~~~~~~~~~~~~~~~ 217 (433)
T 3bws_A 142 EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-HNELWVSQM---QANAVHVFDLKTLAYKATVDLTGKWSKIL 217 (433)
T ss_dssp TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-GTEEEEEEG---GGTEEEEEETTTCCEEEEEECSSSSEEEE
T ss_pred CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-CCEEEEEEC---CCCEEEEEECCCceEEEEEcCCCCCeeEE
Confidence 456788888775432221 1122456688864 477888887 67899999987654443333444679999
Q ss_pred EEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcC-------CCCcEEEEeCCCCce
Q psy6570 78 ALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADP-------KARTIESINLNGKDR 150 (713)
Q Consensus 78 avD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~-------~~~~I~~~~~~g~~~ 150 (713)
+++|.+++||++..... .|.+.+++.......+. ....|.++++++.+++||++.. ..+.|+.+++.....
T Consensus 218 ~~~~~~~~l~~~~~~~~-~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~ 295 (433)
T 3bws_A 218 LYDPIRDLVYCSNWISE-DISVIDRKTKLEIRKTD-KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL 295 (433)
T ss_dssp EEETTTTEEEEEETTTT-EEEEEETTTTEEEEECC-CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE
T ss_pred EEcCCCCEEEEEecCCC-cEEEEECCCCcEEEEec-CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE
Confidence 99998888999886555 89999986543332222 3345899999998889998874 345788999875543
Q ss_pred eEEEecCCCCccceeeeee--CCeEEEEeCCCCcEEEEcccCCCccee
Q psy6570 151 FVVYHTEDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKFGNSDFNV 196 (713)
Q Consensus 151 ~~~~~~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~~~~ 196 (713)
...... ...+.++++. ++.||++....+.|..++..++.....
T Consensus 296 ~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~ 340 (433)
T 3bws_A 296 IDTIGP---PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS 340 (433)
T ss_dssp EEEEEE---EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EeeccC---CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence 333322 2245566654 457999988888999988765544333
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.37 E-value=8.2e-06 Score=86.84 Aligned_cols=112 Identities=9% Similarity=-0.011 Sum_probs=81.1
Q ss_pred cCCeEEEeecCCCCC-CeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccC---------CCCeEEEEecCCC
Q psy6570 36 VGKNLYWTDAGGRSS-NNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELG---------IKPRISGASIDGK 105 (713)
Q Consensus 36 ~~~~ly~td~~~~~~-~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~---------~~~~I~~~~~dG~ 105 (713)
..+++|+++.+.... +.|.++|++...+...+..+ ..| +|+++|..++||++++. .+ .|.+++....
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG-~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~-~VsviD~~t~ 159 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG-FLP-HPVAAEDGSFFAQASTVFERIARGKRTD-YVEVFDPVTF 159 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-SSC-EEEECTTSSCEEEEEEEEEETTEEEEEE-EEEEECTTTC
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC-CCC-ceEECCCCCEEEEEeccccccccCCCCC-EEEEEECCCC
Confidence 457899999831111 79999999876655444444 568 99999999999999852 23 6888877654
Q ss_pred CcE-EEEeC---C---CCCCeeEEEeCCCCeEEEEcCC-CCcEEEEeCCCCce
Q psy6570 106 NKF-NLVDN---N---IQWPTGITIDYPSQRLYWADPK-ARTIESINLNGKDR 150 (713)
Q Consensus 106 ~~~-~l~~~---~---~~~p~glavd~~~~~LY~~d~~-~~~I~~~~~~g~~~ 150 (713)
... .+... . ...|.+|+|++++++||++... .+.|..+|+.....
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv 212 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF 212 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE
Confidence 433 23221 1 3579999999999999999864 78899999876543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.8e-05 Score=83.49 Aligned_cols=185 Identities=11% Similarity=0.049 Sum_probs=119.7
Q ss_pred CcccCCceeEEEccCc----c--cEE-------ecCCCCCceEEEeccCCeEEEeecCCC---CCCeEEEEecCCceEEE
Q psy6570 2 ASISSGNVTRVKREMN----L--KTV-------LSNLHDPRGVAVDWVGKNLYWTDAGGR---SSNNIMVSTLEGRKKRT 65 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~----~--~~~-------~~~~~~p~gla~D~~~~~ly~td~~~~---~~~~I~~~~~~G~~~~~ 65 (713)
+...+++|+.++.... + +++ ..++..|+++..-+.+ ||++..+.. ..+.|.++|.++.....
T Consensus 101 ~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~ 178 (462)
T 2ece_A 101 PGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFEPLG 178 (462)
T ss_dssp EBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCCEEE
T ss_pred ccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCeEEE
Confidence 3456889999997643 1 222 1255689999998764 999877421 23789999988555443
Q ss_pred EEcCC---CCCcceEEEcCCCCcEEEEccC------------------CCCeEEEEecCCCCcEEEEeCC--CCCCeeEE
Q psy6570 66 LLNTG---LNEPYDIALEPLSGRMFWTELG------------------IKPRISGASIDGKNKFNLVDNN--IQWPTGIT 122 (713)
Q Consensus 66 l~~~~---~~~p~~iavD~~~~~ly~td~~------------------~~~~I~~~~~dG~~~~~l~~~~--~~~p~gla 122 (713)
.+..+ ...+.++.+.|..+.||.++|+ .+ +|.+.+++.......+... -..|..|+
T Consensus 179 ~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d-~V~v~D~~~~k~~~tI~vg~~g~~P~~i~ 257 (462)
T 2ece_A 179 KWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGN-RIHFWDLRKRKRIHSLTLGEENRMALELR 257 (462)
T ss_dssp ECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCC-EEEEEETTTTEEEEEEESCTTEEEEEEEE
T ss_pred EEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCC-EEEEEECCCCcEeeEEecCCCCCccceeE
Confidence 33322 1234457778888889999865 45 8999999864222222221 13577776
Q ss_pred E--eCCCCeEEEEcC-----CCCcEEEEeCCCCcee---EEEecCC----C-----------Cccceeeee--eCCeEEE
Q psy6570 123 I--DYPSQRLYWADP-----KARTIESINLNGKDRF---VVYHTED----N-----------GYKPYKLEV--FEDNLYF 175 (713)
Q Consensus 123 v--d~~~~~LY~~d~-----~~~~I~~~~~~g~~~~---~~~~~~~----~-----------~~~p~~i~~--~~~~ly~ 175 (713)
+ ++..+++|++.. .++.|+++.+++...+ ++..... . ...|.+|.+ ++.+||+
T Consensus 258 f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYV 337 (462)
T 2ece_A 258 PLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYL 337 (462)
T ss_dssp ECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEE
T ss_pred eeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEE
Confidence 7 999999999988 8888888777653211 1100000 0 134555554 5779999
Q ss_pred EeCCCCcEEEEccc
Q psy6570 176 STYRTNNILKINKF 189 (713)
Q Consensus 176 td~~~~~i~~~~~~ 189 (713)
+++..+.|..++..
T Consensus 338 Snrg~d~VavfdV~ 351 (462)
T 2ece_A 338 SLWGIGEVRQYDIS 351 (462)
T ss_dssp EETTTTEEEEEECS
T ss_pred EeCCCCEEEEEEec
Confidence 99999999988864
|
| >3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.8e-07 Score=65.65 Aligned_cols=38 Identities=24% Similarity=0.676 Sum_probs=31.9
Q ss_pred CCCCCCCCCCCCcEEe-----ecCCCceeeCCCCCcCCCCCcC
Q psy6570 552 ANKCTPNYCSNNGTCV-----LIEGKPSCKCLPPYSGKQCTER 589 (713)
Q Consensus 552 ~~~C~~~~C~~~~~C~-----~~~g~~~C~C~~G~~G~~C~~~ 589 (713)
+++|.++||.++|+|. +..++|+|.|++||+|+.|+..
T Consensus 8 ~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~~ 50 (55)
T 3u7u_G 8 CAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNY 50 (55)
T ss_dssp CCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSCEE
T ss_pred CCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCcc
Confidence 6899999999999994 4567899999999999999853
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=3.2e-05 Score=79.93 Aligned_cols=177 Identities=10% Similarity=0.033 Sum_probs=108.1
Q ss_pred ccCCceeEEEccCcccEE-ecC-------CCCCceEEEeccCCeEEEeecCCCC-----------CCeEEEEecCCce-E
Q psy6570 4 ISSGNVTRVKREMNLKTV-LSN-------LHDPRGVAVDWVGKNLYWTDAGGRS-----------SNNIMVSTLEGRK-K 63 (713)
Q Consensus 4 ~~~~~I~~~~~~~~~~~~-~~~-------~~~p~gla~D~~~~~ly~td~~~~~-----------~~~I~~~~~~G~~-~ 63 (713)
...+.|+.+++.+...+. +.. ...|.++++++.++.||++.. . .+.|.+.++.... .
T Consensus 62 ~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~---~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 62 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN---PTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE---EEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred CCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcc---cccccccccccCCCeEEEEECCCcccc
Confidence 346778888887643322 221 233899999999899999885 2 4789999987522 1
Q ss_pred E--EEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCC---------------------------
Q psy6570 64 R--TLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNN--------------------------- 114 (713)
Q Consensus 64 ~--~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~--------------------------- 114 (713)
+ ..... ...+.+|+++|... ||+++. .|++.++........+...
T Consensus 139 ~~~~~~~~-~~~~~~~~~s~dg~-l~~~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRTFPM-PRQVYLMRAADDGS-LYVAGP----DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEEEEC-CSSCCCEEECTTSC-EEEESS----SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeeeccC-CCcccceeECCCCc-EEEccC----cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 1 12222 23688899997655 888542 3666666433322222111
Q ss_pred -----------------------------------------CCCCeeEEEeC-CCCeEEEEcCCCCcEEEEeCCCCceeE
Q psy6570 115 -----------------------------------------IQWPTGITIDY-PSQRLYWADPKARTIESINLNGKDRFV 152 (713)
Q Consensus 115 -----------------------------------------~~~p~glavd~-~~~~LY~~d~~~~~I~~~~~~g~~~~~ 152 (713)
-..|.++++++ ++++||++ .++|+.+++.......
T Consensus 213 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~~ 289 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLIK 289 (349)
T ss_dssp EEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEEE
T ss_pred eeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeEEE
Confidence 01455677778 78889888 6789999987654433
Q ss_pred EEecCCCCccceeeeee--CCeEEEEeCCCCcEEEEcccCCCccee
Q psy6570 153 VYHTEDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKFGNSDFNV 196 (713)
Q Consensus 153 ~~~~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~~~~ 196 (713)
.... ...|.++++. +++||++. ..+.|..++...+..+..
T Consensus 290 ~~~~---~~~~~~~~~s~dg~~l~~~~-~~~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 290 AANL---DHTYYCVAFDKKGDKLYLGG-TFNDLAVFNPDTLEKVKN 331 (349)
T ss_dssp EEEC---SSCCCEEEECSSSSCEEEES-BSSEEEEEETTTTEEEEE
T ss_pred EEcC---CCCccceEECCCCCEEEEec-CCCeEEEEeccccceeee
Confidence 3322 2245566654 56788864 457888888765544333
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.29 E-value=1.5e-05 Score=86.96 Aligned_cols=206 Identities=11% Similarity=0.049 Sum_probs=132.5
Q ss_pred cCCceeEEEccCcccEE-ecCCCCCceEEEeccCCeEEEeecCCCC----------------------------------
Q psy6570 5 SSGNVTRVKREMNLKTV-LSNLHDPRGVAVDWVGKNLYWTDAGGRS---------------------------------- 49 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~~~-~~~~~~p~gla~D~~~~~ly~td~~~~~---------------------------------- 49 (713)
..+.+..+|.++.+.+- +.--.+|.++++++.++.+|++......
T Consensus 173 ~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 173 YVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred cCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 35577788888643211 2222389999999999999999863200
Q ss_pred CCeEEEEecCC---ceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCC---------c-EEEEeC-CC
Q psy6570 50 SNNIMVSTLEG---RKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKN---------K-FNLVDN-NI 115 (713)
Q Consensus 50 ~~~I~~~~~~G---~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~---------~-~~l~~~-~~ 115 (713)
.+.|.++|... +.....+..+ ..|.++++.|.++++|+++...+ +|.+++++... + .++... .-
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~-~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG 330 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSP-TVTVLDVTRFDAVFYENADPRSAVVAEPELG 330 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSS-BEEEEEGGGHHHHHHSCCCGGGGEEECCBCC
T ss_pred ECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCC-eEEEEECcccccccccccCcccceEEEcCCC
Confidence 12366666553 2201122222 68999999999999999998877 99999887321 1 122221 23
Q ss_pred CCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCC--------ceeEEEecCCCCccc------ee--eeeeCCeEEEEeCC
Q psy6570 116 QWPTGITIDYPSQRLYWADPKARTIESINLNGK--------DRFVVYHTEDNGYKP------YK--LEVFEDNLYFSTYR 179 (713)
Q Consensus 116 ~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~--------~~~~~~~~~~~~~~p------~~--i~~~~~~ly~td~~ 179 (713)
..|.+++||+++ ++|++....+.|.+++++.. ...++..... ..+| .+ +..++.+||.++..
T Consensus 331 ~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV-~yqpGh~~~~~g~t~~~DGk~l~~~Nk~ 408 (595)
T 1fwx_A 331 LGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV-HYQPGHLKTVMGETLDATNDWLVCLSKF 408 (595)
T ss_dssp SCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC-SSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred CCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec-ccccccceeccceEeCCCCCEEEEcCCC
Confidence 469999999876 99999999999999997651 1233322221 2222 33 34568899999977
Q ss_pred C-CcE-----------EEEcccCCCcceeeec--cccccccEEEEeeccc
Q psy6570 180 T-NNI-----------LKINKFGNSDFNVLAN--NLNRASDVLILQENKQ 215 (713)
Q Consensus 180 ~-~~i-----------~~~~~~~~~~~~~~~~--~~~~~~~i~v~~~~~q 215 (713)
+ +++ ..++. .+..++++.. ....|.+..+++..+.
T Consensus 409 skdr~~~~gp~~~~~~ql~di-s~~~m~lv~d~p~~~ePh~~~i~~~~~~ 457 (595)
T 1fwx_A 409 SKDRFLNVGPLKPENDQLIDI-SGDKMVLVHDGPTFAEPHDAIAVHPSIL 457 (595)
T ss_dssp CTTSSCCCCSSCCEEEEEEEC-SSSSCEEEEEEEESSCCCCEEEECTTTT
T ss_pred CccccccCCCCCCCcceEEEc-CCCcEEEEEEEcCCCCCCceEEccHHHc
Confidence 6 665 55555 3445555533 2567788888776544
|
| >1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.3e-06 Score=58.49 Aligned_cols=36 Identities=31% Similarity=0.688 Sum_probs=31.5
Q ss_pred CCCCCCCCCCCCcEEeecCCCceeeCCCCCcCCCCC
Q psy6570 552 ANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCT 587 (713)
Q Consensus 552 ~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~ 587 (713)
+++|.+++|.++|+|++..++|+|.|++||+|..|+
T Consensus 3 ~d~C~~~pC~ngg~C~~~~~~~~C~C~~G~~G~~Ce 38 (39)
T 1edm_B 3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38 (39)
T ss_dssp CCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred cccCCCCCCCCCCEeEcCCCceEeECCCCCcCCccC
Confidence 578888899999999998889999999999998885
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.20 E-value=4e-05 Score=80.13 Aligned_cols=115 Identities=10% Similarity=0.027 Sum_probs=82.0
Q ss_pred EeccCCeEEEeecCC-CCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccC---------CCCeEEEEec
Q psy6570 33 VDWVGKNLYWTDAGG-RSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELG---------IKPRISGASI 102 (713)
Q Consensus 33 ~D~~~~~ly~td~~~-~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~---------~~~~I~~~~~ 102 (713)
.++..++||++|... ...+.|.++|++.......+..+ ..|. |+++|..++||++++. .+ .|.++++
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG-~~P~-va~spDG~~lyVan~~~~r~~~G~~~~-~VsviD~ 116 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-FLPN-PVVADDGSFIAHASTVFSRIARGERTD-YVEVFDP 116 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-SSCE-EEECTTSSCEEEEEEEEEETTEEEEEE-EEEEECT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC-CCCc-EEECCCCCEEEEEcccccccccCCCCC-EEEEEEC
Confidence 346789999999820 11579999998865554444444 4585 9999999999999842 22 5788877
Q ss_pred CCCCcEEEEeCC-------CCCCeeEEEeCCCCeEEEEcCC-CCcEEEEeCCCCce
Q psy6570 103 DGKNKFNLVDNN-------IQWPTGITIDYPSQRLYWADPK-ARTIESINLNGKDR 150 (713)
Q Consensus 103 dG~~~~~l~~~~-------~~~p~glavd~~~~~LY~~d~~-~~~I~~~~~~g~~~ 150 (713)
.......-+... ...|.+|+|++++++||++... .+.|..+|+.....
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 172 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE
Confidence 654433222211 2479999999999999999864 78899999876543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00013 Score=81.09 Aligned_cols=181 Identities=9% Similarity=0.038 Sum_probs=117.4
Q ss_pred CCceeEEEcc--CcccE-EecCCCCCceEEEe----ccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcC-C-------
Q psy6570 6 SGNVTRVKRE--MNLKT-VLSNLHDPRGVAVD----WVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNT-G------- 70 (713)
Q Consensus 6 ~~~I~~~~~~--~~~~~-~~~~~~~p~gla~D----~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~-~------- 70 (713)
.+.|..+++. +...+ .+.....|++|+++ +.++.||+++. ..+.|.+++.........+.. +
T Consensus 217 dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~---~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~ 293 (567)
T 1qks_A 217 DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY---WPPQYVIMDGETLEPKKIQSTRGMTYDEQE 293 (567)
T ss_dssp TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE---ETTEEEEEETTTCCEEEEEECCEECTTTCC
T ss_pred CCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEc---cCCeEEEEECCCCcEEEEEecccccccccc
Confidence 5678899984 32211 14445679999999 58889999998 778999998765443333322 1
Q ss_pred ---CCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEe-CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCC
Q psy6570 71 ---LNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVD-NNIQWPTGITIDYPSQRLYWADPKARTIESINLN 146 (713)
Q Consensus 71 ---~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~-~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~ 146 (713)
..++.+|++.+.+..+|++..... +|+.++........+.. ..-..|.++.||+++.+||++....++|..+|+.
T Consensus 294 ~~p~~rva~i~~s~~~~~~vv~~~~~g-~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~ 372 (567)
T 1qks_A 294 YHPEPRVAAILASHYRPEFIVNVKETG-KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK 372 (567)
T ss_dssp EESCCCEEEEEECSSSSEEEEEETTTT-EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred ccCCCceEEEEEcCCCCEEEEEecCCC-eEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECC
Confidence 114457777766566666654444 89999876543222221 1335688999999999999999999999999987
Q ss_pred CCceeEEEecCCCCccc-eeeee-e--CCeEEEEeC-CCCcEEEEcccC
Q psy6570 147 GKDRFVVYHTEDNGYKP-YKLEV-F--EDNLYFSTY-RTNNILKINKFG 190 (713)
Q Consensus 147 g~~~~~~~~~~~~~~~p-~~i~~-~--~~~ly~td~-~~~~i~~~~~~~ 190 (713)
..............++| .++.+ + .+.+|++.. +.+.|..++...
T Consensus 373 t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 373 EGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp TTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 65443333320124555 35543 2 356776653 557888887654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00013 Score=76.81 Aligned_cols=148 Identities=7% Similarity=-0.059 Sum_probs=92.7
Q ss_pred eccCCeEEEeec-CCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccC--------CCCeEEEEecCC
Q psy6570 34 DWVGKNLYWTDA-GGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELG--------IKPRISGASIDG 104 (713)
Q Consensus 34 D~~~~~ly~td~-~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~--------~~~~I~~~~~dG 104 (713)
.+..+.+|++|. +......|.+++++.......+..+ ..| +|++.|..++||+++.. ....|.++++..
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 345678999986 2110118899998754443334444 468 99999999999999742 112688888763
Q ss_pred CCcEEEEeCC-------CCCCeeEEEeCCCCeEEEEcCC-CCcEEEEeCCCCceeEEEe-cCCCCccceeeeeeCCeEEE
Q psy6570 105 KNKFNLVDNN-------IQWPTGITIDYPSQRLYWADPK-ARTIESINLNGKDRFVVYH-TEDNGYKPYKLEVFEDNLYF 175 (713)
Q Consensus 105 ~~~~~l~~~~-------~~~p~glavd~~~~~LY~~d~~-~~~I~~~~~~g~~~~~~~~-~~~~~~~p~~i~~~~~~ly~ 175 (713)
.....-+... ...|.+++|++++++||++... .+.|..++ +.... +.. .. ......+..++.++|+
T Consensus 107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~--~~~~i~--~~~~~~~~~~~~~~~~ 181 (373)
T 2mad_H 107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS--DDQLLS--SPTCYHIHPGAPSTFY 181 (373)
T ss_pred CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE--EeEEcC--CCceEEEEeCCCceEE
Confidence 3222222111 2468999999999999999865 68899998 65433 222 11 1122223334556777
Q ss_pred EeCCCCcEEEEcc
Q psy6570 176 STYRTNNILKINK 188 (713)
Q Consensus 176 td~~~~~i~~~~~ 188 (713)
+.+..+++..++.
T Consensus 182 ~~~~dg~~~~vd~ 194 (373)
T 2mad_H 182 LLCAQGGLAKTDH 194 (373)
T ss_pred EEcCCCCEEEEEC
Confidence 7777777766665
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.14 E-value=9.6e-05 Score=73.91 Aligned_cols=177 Identities=10% Similarity=-0.025 Sum_probs=114.0
Q ss_pred ccCCceeEEEccCcc-cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCC-ceEEEEEcCC-CCCcceEEEc
Q psy6570 4 ISSGNVTRVKREMNL-KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEG-RKKRTLLNTG-LNEPYDIALE 80 (713)
Q Consensus 4 ~~~~~I~~~~~~~~~-~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G-~~~~~l~~~~-~~~p~~iavD 80 (713)
...+.|+.+++.+.. +.+......+..+++.+.+..|+++. .+.|.+.++++ .....+.... ...+..+++.
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-----EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-----TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred CcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-----CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence 346778888887654 33344456688999999887777654 35899999987 5555444322 2456789999
Q ss_pred CCCCcEEEEccC--CCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCC--cEEEEeCCCCceeEEEec
Q psy6570 81 PLSGRMFWTELG--IKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKAR--TIESINLNGKDRFVVYHT 156 (713)
Q Consensus 81 ~~~~~ly~td~~--~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~--~I~~~~~~g~~~~~~~~~ 156 (713)
|...+|+++... ...+|+.+++++...+.+.. ......+++++.+.+|+++....+ +|+.+++++.....+...
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 171 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTK--NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG 171 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCCCEECCS--SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCceEEeec--CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC
Confidence 988888887632 23489999988776555432 233678899998888887654334 677777776555444332
Q ss_pred CCCCccceeeee--eCCeEEEEeC--CCCcEEEEcccC
Q psy6570 157 EDNGYKPYKLEV--FEDNLYFSTY--RTNNILKINKFG 190 (713)
Q Consensus 157 ~~~~~~p~~i~~--~~~~ly~td~--~~~~i~~~~~~~ 190 (713)
......+++ ++..|+++.. ....|+.++..+
T Consensus 172 ---~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~ 206 (297)
T 2ojh_A 172 ---EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG 206 (297)
T ss_dssp ---SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred ---CCccccceECCCCCEEEEEecCCCCccEEEECCCC
Confidence 223344444 3556776643 345566666443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00036 Score=71.11 Aligned_cols=157 Identities=17% Similarity=0.141 Sum_probs=100.1
Q ss_pred CCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCC-------cEEEEccC--CCCeEEEEecCCCC--cEEE------E
Q psy6570 49 SSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSG-------RMFWTELG--IKPRISGASIDGKN--KFNL------V 111 (713)
Q Consensus 49 ~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~-------~ly~td~~--~~~~I~~~~~dG~~--~~~l------~ 111 (713)
....+.+++++|+.+..+- ..+++++.+-+.-. ++|.++.. .+ +|..+++|... .+.+ +
T Consensus 48 k~~gL~Vydl~G~~l~~~~---~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n-~l~vf~iDp~~~~l~~i~~~~~pv 123 (355)
T 3amr_A 48 KKSGLVVYSLDGKMLHSYN---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKN-TIEIYAIDGKNGTLQSMTDPDHPI 123 (355)
T ss_dssp TTTEEEEEETTSCEEEEEC---CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCC-EEEEEEECTTTCCEEECSCTTSCE
T ss_pred CCCCEEEEcCCCcEEEEcc---CCCcccEEEecccccCCceEeEEEEeCCCCCCC-eEEEEEECCCCCceeeccccccCc
Confidence 3578999999998877653 25778877765211 46888887 67 88888776322 2223 1
Q ss_pred eCCCCCCeeEEE--eCCCC--eEEEEcCCCCcEEEEeC----CCC-ceeEEEecCCCCccceeeeee--CCeEEEEeCCC
Q psy6570 112 DNNIQWPTGITI--DYPSQ--RLYWADPKARTIESINL----NGK-DRFVVYHTEDNGYKPYKLEVF--EDNLYFSTYRT 180 (713)
Q Consensus 112 ~~~~~~p~glav--d~~~~--~LY~~d~~~~~I~~~~~----~g~-~~~~~~~~~~~~~~p~~i~~~--~~~ly~td~~~ 180 (713)
.+.+..|.||++ ++..+ ++|+++.. ++++.+.+ +|. ..+++.+... ...|.++.++ .++||+++...
T Consensus 124 ~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~ 201 (355)
T 3amr_A 124 ATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDE 201 (355)
T ss_dssp ECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTT
T ss_pred CCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccc
Confidence 244578999999 87666 47777765 67766554 232 2233333322 4578899998 47999999885
Q ss_pred CcEEEEccc--CCCcceeee----ccc-cccccEEEEee
Q psy6570 181 NNILKINKF--GNSDFNVLA----NNL-NRASDVLILQE 212 (713)
Q Consensus 181 ~~i~~~~~~--~~~~~~~~~----~~~-~~~~~i~v~~~ 212 (713)
.||+++.. ++...+.+. ..+ ..+++|.++..
T Consensus 202 -GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~ 239 (355)
T 3amr_A 202 -AIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYA 239 (355)
T ss_dssp -EEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEEC
T ss_pred -eEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEec
Confidence 49999944 322322221 122 26788888744
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00033 Score=72.68 Aligned_cols=184 Identities=13% Similarity=0.081 Sum_probs=120.1
Q ss_pred CCCCCceEEEeccCCeEEEeecCCC------------CCCeEEEEecCCc--e-EEEE-EcCC----CCCcceEEEc-C-
Q psy6570 24 NLHDPRGVAVDWVGKNLYWTDAGGR------------SSNNIMVSTLEGR--K-KRTL-LNTG----LNEPYDIALE-P- 81 (713)
Q Consensus 24 ~~~~p~gla~D~~~~~ly~td~~~~------------~~~~I~~~~~~G~--~-~~~l-~~~~----~~~p~~iavD-~- 81 (713)
.+..+.++.+|. .++|++.|.+.. ...+|.++||... . .+.+ +... .....+|+|| .
T Consensus 85 ~lvsV~~v~iD~-~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~ 163 (381)
T 3q6k_A 85 ELTSIYQPVIDD-CRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVAN 163 (381)
T ss_dssp SSSCEEEEEECT-TCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESC
T ss_pred ceEEeeEEEEcC-CCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEeccc
Confidence 467788999996 589999998742 1247999999876 3 3322 2222 1335689999 2
Q ss_pred -C----CCcEEEEccCCCCeEEEEecCCCCcEEEEeC-------------C-----CCCCeeEEEeCC----CCeEEEEc
Q psy6570 82 -L----SGRMFWTELGIKPRISGASIDGKNKFNLVDN-------------N-----IQWPTGITIDYP----SQRLYWAD 134 (713)
Q Consensus 82 -~----~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~-------------~-----~~~p~glavd~~----~~~LY~~d 134 (713)
. ++++|+||.+.. .|.++++.......+... + .....||||++. ..+|||.-
T Consensus 164 ~~~~c~~~~aYItD~~~~-gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~p 242 (381)
T 3q6k_A 164 PKGDCSETFVYITNFLRG-ALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLA 242 (381)
T ss_dssp TTTTSCSEEEEEEETTTT-EEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEE
T ss_pred CCCCCCccEEEEEcCCCC-cEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEE
Confidence 2 678999998766 888888764433333320 0 124578999987 78999999
Q ss_pred CCCCcEEEEeC----CC---CceeEEEecCCCCccceeeeee--CCeEEEEeCCCCcEEEEcccC-C---Ccceeeec--
Q psy6570 135 PKARTIESINL----NG---KDRFVVYHTEDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKFG-N---SDFNVLAN-- 199 (713)
Q Consensus 135 ~~~~~I~~~~~----~g---~~~~~~~~~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~-~---~~~~~~~~-- 199 (713)
....+++++.. +. ...+.+.... ...+..+++++ .+.||+++...+.|.+.+..+ . ....++..
T Consensus 243 lss~~ly~V~T~~L~~~~~~~~v~~~G~kg-~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~ 321 (381)
T 3q6k_A 243 GSAIKVYSVNTKELKQKGGKLNPELLGNRG-KYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS 321 (381)
T ss_dssp SSCSEEEEEEHHHHSSTTCCCCCEEEEECC-TTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT
T ss_pred CCCCcEEEEEHHHhhCcchhhceEEeeecC-CCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC
Confidence 99899999972 22 2333343321 12344566675 578999999999999998764 2 23334333
Q ss_pred cccccccEEEE
Q psy6570 200 NLNRASDVLIL 210 (713)
Q Consensus 200 ~~~~~~~i~v~ 210 (713)
.+..|.++++.
T Consensus 322 ~l~~pd~~~i~ 332 (381)
T 3q6k_A 322 RFVFGTDISVD 332 (381)
T ss_dssp TCCSEEEEEEC
T ss_pred CccccCeEEEC
Confidence 24456666654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=5.1e-05 Score=79.29 Aligned_cols=142 Identities=4% Similarity=-0.216 Sum_probs=95.3
Q ss_pred cCCeEEEeecCCCCCC----eEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccC---------CCCeEEEEec
Q psy6570 36 VGKNLYWTDAGGRSSN----NIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELG---------IKPRISGASI 102 (713)
Q Consensus 36 ~~~~ly~td~~~~~~~----~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~---------~~~~I~~~~~ 102 (713)
..+++|+++. ..+ +|.++|++.......+..+ ..| +|+++|..++||+++.. .+ .|.++++
T Consensus 30 ~~~~~yV~~~---~~~~~~d~vsvID~~t~~v~~~i~vG-~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~-~VsviD~ 103 (368)
T 1mda_H 30 ISRRSHITLP---AYFAGTTENWVSCAGCGVTLGHSLGA-FLS-LAVAGHSGSDFALASTSFARSAKGKRTD-YVEVFDP 103 (368)
T ss_dssp CTTEEEEEEC---TTTCSSEEEEEEETTTTEEEEEEEEC-TTC-EEEECTTSSCEEEEEEEETTTTSSSEEE-EEEEECT
T ss_pred CCCeEEEECC---ccCCccceEEEEECCCCeEEEEEeCC-CCC-ceEECCCCCEEEEEcccccccccCCCCC-EEEEEEC
Confidence 3478999998 444 8889998875554444444 468 99999999999999842 23 7888888
Q ss_pred CCCCcEEEEeCC-------CCCCeeEEEeCCCCeEEEEcCC-CCcEEE--EeCCCCceeEEEecCCCCccceeeeeeCCe
Q psy6570 103 DGKNKFNLVDNN-------IQWPTGITIDYPSQRLYWADPK-ARTIES--INLNGKDRFVVYHTEDNGYKPYKLEVFEDN 172 (713)
Q Consensus 103 dG~~~~~l~~~~-------~~~p~glavd~~~~~LY~~d~~-~~~I~~--~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ 172 (713)
.......-+... ...|.+|+|++++++||++... .+.|.. +|... ...+... ....+...+++
T Consensus 104 ~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~-----~~~~~~p~g~~ 176 (368)
T 1mda_H 104 VTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSA-----SCFHIHPGAAA 176 (368)
T ss_dssp TTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECS-----SCCCCEEEETT
T ss_pred CCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECC-----CceEEccCCCe
Confidence 754433322211 2579999999999999999865 566777 66544 3333211 11234445666
Q ss_pred EEEEeCCCCcEEEEcccC
Q psy6570 173 LYFSTYRTNNILKINKFG 190 (713)
Q Consensus 173 ly~td~~~~~i~~~~~~~ 190 (713)
+|++....+++..++...
T Consensus 177 ~~~~~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 177 THYLGSCPASLAASDLAA 194 (368)
T ss_dssp EEECCCCTTSCEEEECCS
T ss_pred EEEEEcCCCCEEEEECcc
Confidence 777776777766666543
|
| >3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.2e-06 Score=61.65 Aligned_cols=35 Identities=31% Similarity=0.777 Sum_probs=28.3
Q ss_pred cCCCCCCCCCcEe-----ccCCCCccccCCCCCcCCCCcc
Q psy6570 417 QCLNLKCQNGGVC-----VNKTTGLECDCPKFYYGKNCQY 451 (713)
Q Consensus 417 ~C~~~~C~~~~~C-----~~~~~~~~C~C~~G~~g~~C~~ 451 (713)
+|.+.||.++|+| ++..++|+|.|++||+|..|+.
T Consensus 10 eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~ 49 (55)
T 3u7u_G 10 EKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQN 49 (55)
T ss_dssp STTTTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSCE
T ss_pred CCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCc
Confidence 7888899999999 4566789999999999998873
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00033 Score=74.90 Aligned_cols=178 Identities=12% Similarity=0.056 Sum_probs=115.5
Q ss_pred CceeEEEccCccc-EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCc
Q psy6570 7 GNVTRVKREMNLK-TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGR 85 (713)
Q Consensus 7 ~~I~~~~~~~~~~-~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ 85 (713)
..|+.+++.+... .+......+..+++.+.+..|+++.... ....|++.++++...+.+... ......+++.|....
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~-g~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~spdg~~ 280 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT-GSLNLYVMDLASGQIRQVTDG-RSNNTEPTWFPDSQN 280 (415)
T ss_dssp CEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEEECCCC-SSCEEEEEECTTSSE
T ss_pred cEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecC-CCceEEEEECCCCCEEeCcCC-CCcccceEECCCCCE
Confidence 4777888776443 3333334567899999888888765411 345799999987665544432 345778999987777
Q ss_pred EEEEcc-CCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCC--CCcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 86 MFWTEL-GIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPK--ARTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 86 ly~td~-~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~--~~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
|+++.. ....+|++.++++...+.+.. .......+++++++++|+++... ...|+.+++++.....+... ..
T Consensus 281 l~~~s~~~g~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~----~~ 355 (415)
T 2hqs_A 281 LAFTSDQAGRPQVYKVNINGGAPQRITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSST----FL 355 (415)
T ss_dssp EEEEECTTSSCEEEEEETTSSCCEECCC-SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCS----SS
T ss_pred EEEEECCCCCcEEEEEECCCCCEEEEec-CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCC----CC
Confidence 777653 333489999998776544432 23455689999999999888654 45899999987665544322 13
Q ss_pred ceeeee--eCCeEEEEeCCCC--cEEEEcccCC
Q psy6570 163 PYKLEV--FEDNLYFSTYRTN--NILKINKFGN 191 (713)
Q Consensus 163 p~~i~~--~~~~ly~td~~~~--~i~~~~~~~~ 191 (713)
...+++ ++..|+++....+ .|+.++..++
T Consensus 356 ~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 356 DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp CEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred cCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 344444 3556766654433 6888876543
|
| >3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.91 E-value=4.3e-06 Score=86.93 Aligned_cols=42 Identities=45% Similarity=0.916 Sum_probs=0.0
Q ss_pred CCCCCCcEEcCCCCCeeccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEeecCC
Q psy6570 511 CTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEG 571 (713)
Q Consensus 511 ~~C~~~g~C~~~~~~~~C~C~~g~~G~~C~~~~~~~~c~~~~~~C~~~~C~~~~~C~~~~g 571 (713)
.+|.++|+|.+.. +|.|++||+|..|+. ..|.+.|+|....|
T Consensus 371 ~~C~ngg~C~~~~---~C~C~~G~~G~~Ce~----------------c~C~~~g~C~~~~G 412 (426)
T 3zyj_B 371 LHCQNGGTCHNNV---RCLCPAAYTGILCEK----------------LRCEEAGSCGSDSG 412 (426)
T ss_dssp -------------------------------------------------------------
T ss_pred ccCCCCCCcCCCC---CCcCCCCCcCCCCcC----------------CCCCCCCcccCCCC
Confidence 4788888998654 899999999987762 23666777776554
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00056 Score=73.02 Aligned_cols=180 Identities=12% Similarity=0.023 Sum_probs=117.3
Q ss_pred CceeEEEccCcc-cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCc
Q psy6570 7 GNVTRVKREMNL-KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGR 85 (713)
Q Consensus 7 ~~I~~~~~~~~~-~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ 85 (713)
++|+.+++++.. +.+.........+++.+.++.|+++.... ....|.+.++++...+.+... ...+..+++.|...+
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~~l~~~-~~~~~~~~~spdg~~ 236 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVRQVASF-PRHNGAPAFSPDGSK 236 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEEEEECC-SSCEEEEEECTTSSE
T ss_pred ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEEEeecC-CCcccCEEEcCCCCE
Confidence 678888888743 34444455678899999888888876511 236899999987665555433 246788999998777
Q ss_pred EEEEccC-CCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcC--CCCcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 86 MFWTELG-IKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADP--KARTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 86 ly~td~~-~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~--~~~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
|+++... ....|++.++++...+.+.. .......+++++++.+|+++.. ...+|+.+++++.....+... ...
T Consensus 237 la~~~~~~g~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~---~~~ 312 (415)
T 2hqs_A 237 LAFALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE---GSQ 312 (415)
T ss_dssp EEEEECTTSSCEEEEEETTTCCEEECCC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCS---SSE
T ss_pred EEEEEecCCCceEEEEECCCCCEEeCcC-CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecC---CCc
Confidence 8876533 23379999998765544432 3345678999998888887753 344899999987665443322 122
Q ss_pred ceeeee--eCCeEEEEeCC--CCcEEEEcccCCC
Q psy6570 163 PYKLEV--FEDNLYFSTYR--TNNILKINKFGNS 192 (713)
Q Consensus 163 p~~i~~--~~~~ly~td~~--~~~i~~~~~~~~~ 192 (713)
...+++ ++.+|+++... ...|+.++..++.
T Consensus 313 ~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 313 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred ccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 333443 45667766543 3467777765543
|
| >1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A | Back alignment and structure |
|---|
Probab=97.88 E-value=9.7e-06 Score=54.22 Aligned_cols=34 Identities=24% Similarity=0.625 Sum_probs=31.0
Q ss_pred ccCCCCCCCCCCCCeeeccCCCceeeeCCCCccc
Q psy6570 219 VTNHCDDKPCHQSALCINLPSSHTCLCPDHLTEE 252 (713)
Q Consensus 219 ~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~~~ 252 (713)
.+|+|..+||.++++|++..++|+|.|++||+|.
T Consensus 2 d~d~C~~~pC~ngg~C~~~~~~~~C~C~~G~~G~ 35 (39)
T 1edm_B 2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGK 35 (39)
T ss_dssp CCCTTTTCCCCTTCEEEEETTEEEEECCTTCCST
T ss_pred ccccCCCCCCCCCCEeEcCCCceEeECCCCCcCC
Confidence 4689999999999999999999999999999853
|
| >3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=5.5e-06 Score=86.12 Aligned_cols=104 Identities=29% Similarity=0.652 Sum_probs=30.3
Q ss_pred eeecCCCCCeecCCCCccCCCCCCccccCCCCCCcccCCCCccCCCCCCCCCCCCcEE-cCCCCCeecc-CCCCCCCCCC
Q psy6570 462 ECSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTC-IPNSKNNVCK-CPSQYTGRRC 539 (713)
Q Consensus 462 ~C~~~~~~~~C~C~~G~~g~~C~~~~C~~~~~~~~C~C~~G~~g~~C~~~~C~~~g~C-~~~~~~~~C~-C~~g~~G~~C 539 (713)
.|....+.+.|.|..+++|..|+. |.+||.+..+.. +..| ......+.|. |+-++.|..|
T Consensus 305 ~C~~~~g~~~C~C~~~ttG~~CE~-------------C~pgy~~~P~~~-----gt~~p~~~g~~~~C~pC~Cn~~g~~C 366 (426)
T 3zyj_B 305 VCVYDNSKLTCECEHNTTGPDCGK-------------CKKNYQGRPWSP-----GSYLPIPKGAANACIPSISSIGTNVC 366 (426)
T ss_dssp CEEEETTEEEECCCTTEESSSSCE-------------ECTTCCSSCCCC-----CBCCSSSSCBCCCCCCCCC-------
T ss_pred hcCCCCCCceeeCCCCCcCCCccc-------------cccccccCcccC-----CcccccCCCCCCcccCCCCCCCcCcc
Confidence 455555556888888888888875 778887765432 2111 1112234453 4444556666
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCcEEeecCCCceeeCCCCCcCCCCCcCCCCCCCCCCCCCCCeEecC
Q psy6570 540 ECAVGDTSCASLANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSPSCHNYCDNAGLCSYS 608 (713)
Q Consensus 540 ~~~~~~~~c~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~~~C~~~C~~~g~C~~~ 608 (713)
+.. ..+|.++|+|.+.. +|.|++||+|..|+.. .|.+.|+|...
T Consensus 367 D~~--------------t~~C~ngg~C~~~~---~C~C~~G~~G~~Ce~c--------~C~~~g~C~~~ 410 (426)
T 3zyj_B 367 DNE--------------LLHCQNGGTCHNNV---RCLCPAAYTGILCEKL--------RCEEAGSCGSD 410 (426)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccC--------------cccCCCCCCcCCCC---CCcCCCCCcCCCCcCC--------CCCCCCcccCC
Confidence 532 23688889998654 8999999999988642 36666777543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00044 Score=68.93 Aligned_cols=146 Identities=8% Similarity=0.053 Sum_probs=94.0
Q ss_pred CCceeEEEccCcccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCc
Q psy6570 6 SGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGR 85 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ 85 (713)
..+|+.+++.+.....+.....+..+++.+.++.|+++.... ..-+|+.+++++.....+. .....+..++++|....
T Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~ 186 (297)
T 2ojh_A 109 KSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRD-QVFDIYSMDIDSGVETRLT-HGEGRNDGPDYSPDGRW 186 (297)
T ss_dssp SCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEET-TEEEEEEEETTTCCEEECC-CSSSCEEEEEECTTSSE
T ss_pred cceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCC-CceEEEEEECCCCcceEcc-cCCCccccceECCCCCE
Confidence 456777777665444444444577788888888888665410 1235777777765554443 33356788999987777
Q ss_pred EEEEcc-CCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCC----------CCcEEEEeCCCCceeEEE
Q psy6570 86 MFWTEL-GIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPK----------ARTIESINLNGKDRFVVY 154 (713)
Q Consensus 86 ly~td~-~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~----------~~~I~~~~~~g~~~~~~~ 154 (713)
|+++.. ....+|+.+++++...+.+.. .......+++++...+|+++... ..+|+.+++++.....+.
T Consensus 187 l~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 187 IYFNSSRTGQMQIWRVRVDGSSVERITD-SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp EEEEECTTSSCEEEEEETTSSCEEECCC-CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred EEEEecCCCCccEEEECCCCCCcEEEec-CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence 877653 333478888877766544432 22345678999888888877542 256999998876655444
|
| >3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D | Back alignment and structure |
|---|
Probab=97.74 E-value=2.4e-06 Score=61.22 Aligned_cols=43 Identities=28% Similarity=0.774 Sum_probs=34.6
Q ss_pred CcccCCCCccCCCCCCCCCCCCcEEcC----CCCCeeccCCCCCCCCCCccc
Q psy6570 495 PKCMCSPGYSGKKCDTCTCLNGGTCIP----NSKNNVCKCPSQYTGRRCECA 542 (713)
Q Consensus 495 ~~C~C~~G~~g~~C~~~~C~~~g~C~~----~~~~~~C~C~~g~~G~~C~~~ 542 (713)
+.|.|++||. ..||.|+|+|++ ..+.|+|.|++||+|.+||..
T Consensus 3 ~~C~C~~g~~-----~~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce~~ 49 (52)
T 3ca7_A 3 PTYKCPETFD-----AWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49 (52)
T ss_dssp CCBCCCHHHH-----HHTSCTTCEEEEEEETTEEEEEEECCTTEESTTSCEE
T ss_pred eeeECCCCCc-----CCcCCCCCEEecCccCCCCCEEEECCCCCcCCCCccc
Confidence 4577888876 347899999986 345789999999999999854
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00017 Score=77.78 Aligned_cols=113 Identities=13% Similarity=0.126 Sum_probs=80.6
Q ss_pred ecCCCCCceEEEeccCCeEEEeecCCC------------------CCCeEEEEecCCce--------EEEEEc-------
Q psy6570 22 LSNLHDPRGVAVDWVGKNLYWTDAGGR------------------SSNNIMVSTLEGRK--------KRTLLN------- 68 (713)
Q Consensus 22 ~~~~~~p~gla~D~~~~~ly~td~~~~------------------~~~~I~~~~~~G~~--------~~~l~~------- 68 (713)
.+.+.+|++|++++.++.||++-.++. ..+.|+++.+++.. ...++.
T Consensus 380 AT~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~ 459 (592)
T 4a9v_A 380 ATRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHA 459 (592)
T ss_dssp CCCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTST
T ss_pred CccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccc
Confidence 345678999999999999999865431 13779999876532 222221
Q ss_pred -------------CCCCCcceEEEcCCCCcEEE-EccCC----------CCeEEEEecCCCCcEEEEeC-CCCCCeeEEE
Q psy6570 69 -------------TGLNEPYDIALEPLSGRMFW-TELGI----------KPRISGASIDGKNKFNLVDN-NIQWPTGITI 123 (713)
Q Consensus 69 -------------~~~~~p~~iavD~~~~~ly~-td~~~----------~~~I~~~~~dG~~~~~l~~~-~~~~p~glav 123 (713)
..+..|.+|++|+ .|.||+ ||... +..|++++.+....+.++.. ....|+||++
T Consensus 460 ~~~~~g~~~~~~~~~fnsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiaf 538 (592)
T 4a9v_A 460 GTPKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISF 538 (592)
T ss_dssp TSGGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEE
T ss_pred cccccCccCccccCccCCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEE
Confidence 1268899999996 688888 88531 12789998865455555543 3567999999
Q ss_pred eCCCCeEEEEcC
Q psy6570 124 DYPSQRLYWADP 135 (713)
Q Consensus 124 d~~~~~LY~~d~ 135 (713)
+++.+.||++-.
T Consensus 539 SPD~ktLfV~vQ 550 (592)
T 4a9v_A 539 SPDQKTLFVGIQ 550 (592)
T ss_dssp CTTSSEEEEEEE
T ss_pred CCCCCEEEEEEe
Confidence 999999999864
|
| >2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A | Back alignment and structure |
|---|
Probab=97.71 E-value=4e-06 Score=61.72 Aligned_cols=38 Identities=26% Similarity=0.563 Sum_probs=32.0
Q ss_pred CCCCCCCCCCCC--cEEeecCCCceeeCCCCCc-CCCCCcC
Q psy6570 552 ANKCTPNYCSNN--GTCVLIEGKPSCKCLPPYS-GKQCTER 589 (713)
Q Consensus 552 ~~~C~~~~C~~~--~~C~~~~g~~~C~C~~G~~-G~~C~~~ 589 (713)
+++|.++||.++ |+|++..++|+|.|++||+ |..|+..
T Consensus 11 ~d~C~snPC~nga~gtC~~~~g~y~C~C~~Gy~~G~~C~~~ 51 (61)
T 2k2s_B 11 PAACSSNPCGPEAAGTCKETNSGYICRCNQGYRISLDGTGN 51 (61)
T ss_dssp CCHHHHCSSCSSSCCEEEECSSEEEEECCTTEEEEECSSSC
T ss_pred CCcCcCCCCcCCCccccccCCCceEeECCCCCccCCCCCCC
Confidence 577888889887 7999988899999999999 9888653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00082 Score=70.25 Aligned_cols=127 Identities=12% Similarity=0.097 Sum_probs=78.7
Q ss_pred ccCCeEEEeecCCCCCCeEEEEecCCceEEEEEc----C-----CCCCcce---EEEcCCCCcEEEEcc-C--------C
Q psy6570 35 WVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLN----T-----GLNEPYD---IALEPLSGRMFWTEL-G--------I 93 (713)
Q Consensus 35 ~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~----~-----~~~~p~~---iavD~~~~~ly~td~-~--------~ 93 (713)
+....+||... .++|.++++.+....++.. . ....|.+ +++++..++||++.. . .
T Consensus 209 ~~g~~~~~~~~----~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~ 284 (361)
T 2oiz_A 209 LDKDKAHFVSY----YGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFP 284 (361)
T ss_dssp ECSSEEEEEBT----TSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCC
T ss_pred ccCCEEEEEeC----CCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCC
Confidence 33445555543 3578888876543332211 0 0112444 999998899999854 1 1
Q ss_pred CCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeee
Q psy6570 94 KPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF 169 (713)
Q Consensus 94 ~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~ 169 (713)
...|+++++.......-+.... |.+|+|++++++||++.. +.|..+++.....+++..-......|.+|++.
T Consensus 285 ~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~--~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~ 356 (361)
T 2oiz_A 285 AAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG--GNVNVYDISQPEPKLLRTIEGAAEASLQVQFH 356 (361)
T ss_dssp CSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS--SCEEEEECSSSSCEEEEEETTSCSSEEEEEEC
T ss_pred CceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC--CeEEEEECCCCcceeeEEeccCCCCcEEEEec
Confidence 1278888886544333333333 999999999999999985 88999998765334443321225577777665
|
| >1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A | Back alignment and structure |
|---|
Probab=97.71 E-value=2.6e-05 Score=56.04 Aligned_cols=38 Identities=34% Similarity=0.851 Sum_probs=30.2
Q ss_pred CCCCCCC---CCCCCcEEe--ecCCCceeeCCCCCcCCCCCcC
Q psy6570 552 ANKCTPN---YCSNNGTCV--LIEGKPSCKCLPPYSGKQCTER 589 (713)
Q Consensus 552 ~~~C~~~---~C~~~~~C~--~~~g~~~C~C~~G~~G~~C~~~ 589 (713)
+++|.++ +|.++|+|+ +..++|+|.|++||+|..|+..
T Consensus 3 i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~ 45 (53)
T 1egf_A 3 YPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR 45 (53)
T ss_dssp ECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCCSSSSCCC
T ss_pred cccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCcCCcCCcc
Confidence 4567765 888888998 6778888999999999888753
|
| >3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D | Back alignment and structure |
|---|
Probab=97.70 E-value=2.8e-06 Score=60.89 Aligned_cols=46 Identities=37% Similarity=0.824 Sum_probs=31.3
Q ss_pred CeeecCCCcccCCccccCCCCCCCCCCceeeCCCCCCCCCceeeCCCCcccCCCCc
Q psy6570 329 PHCICQENFYGTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCES 384 (713)
Q Consensus 329 ~~C~C~~g~~G~~C~~~~c~~~~C~~~~~C~~~~~~~~~~~~C~C~~G~~g~~C~~ 384 (713)
+.|.|++||. ..||+|+|+|+.......+.|.|.|++||+|.+|+.
T Consensus 3 ~~C~C~~g~~----------~~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce~ 48 (52)
T 3ca7_A 3 PTYKCPETFD----------AWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48 (52)
T ss_dssp CCBCCCHHHH----------HHTSCTTCEEEEEEETTEEEEEEECCTTEESTTSCE
T ss_pred eeeECCCCCc----------CCcCCCCCEEecCccCCCCCEEEECCCCCcCCCCcc
Confidence 4688888886 347888888875210011257888888888888874
|
| >1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=2.7e-05 Score=53.85 Aligned_cols=30 Identities=33% Similarity=0.800 Sum_probs=20.8
Q ss_pred CCCCCcEEe--ecCCCceeeCCCCCcCCCCCc
Q psy6570 559 YCSNNGTCV--LIEGKPSCKCLPPYSGKQCTE 588 (713)
Q Consensus 559 ~C~~~~~C~--~~~g~~~C~C~~G~~G~~C~~ 588 (713)
+|.++|+|+ +..++|+|.|++||+|..|+.
T Consensus 10 pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~ 41 (45)
T 1a3p_A 10 YCLNGGVXMHIESLDSYTCNCVIGYSGDRCQT 41 (45)
T ss_dssp CCSSSCEEEECTTTSSEEEECCTTEETTTTCE
T ss_pred CCCCCCEEEeecCCCCEEEEcCCCCcCCcCCc
Confidence 677777776 455667777777777777754
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0011 Score=75.45 Aligned_cols=181 Identities=7% Similarity=-0.077 Sum_probs=105.2
Q ss_pred CceeEEEccC------cccEE-e-cCCCCCceEEEeccCCeEEEeecCCC----CCCeEEEEecCC-c---eEEEEEcCC
Q psy6570 7 GNVTRVKREM------NLKTV-L-SNLHDPRGVAVDWVGKNLYWTDAGGR----SSNNIMVSTLEG-R---KKRTLLNTG 70 (713)
Q Consensus 7 ~~I~~~~~~~------~~~~~-~-~~~~~p~gla~D~~~~~ly~td~~~~----~~~~I~~~~~~G-~---~~~~l~~~~ 70 (713)
.+|+++++++ ..... . .......++++.+.++.|+++..... ....|++.++++ . ..+.+....
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~ 240 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP 240 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred eEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence 5788888887 44332 3 33344567889999889988775210 124799999984 3 344444322
Q ss_pred CCCcceEEEcCCCCcEEEE-ccCCCCeEEEEecCCCCcEEEEeCC--CCC------CeeEEEeCCCCeEEEEcCCCCcEE
Q psy6570 71 LNEPYDIALEPLSGRMFWT-ELGIKPRISGASIDGKNKFNLVDNN--IQW------PTGITIDYPSQRLYWADPKARTIE 141 (713)
Q Consensus 71 ~~~p~~iavD~~~~~ly~t-d~~~~~~I~~~~~dG~~~~~l~~~~--~~~------p~glavd~~~~~LY~~d~~~~~I~ 141 (713)
...+..+++.|.++ ||++ +.....+|++.++++...+.++... ... ...+++.+.+..||.+.....+|+
T Consensus 241 ~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (662)
T 3azo_A 241 EEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLG 319 (662)
T ss_dssp TBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEE
T ss_pred CceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEE
Confidence 35677889987665 5554 4433337999988665555444321 111 346777755555555444556788
Q ss_pred EEeCCCCceeEEEecCCCCccceee-eeeCCeEEEEeCCC---CcEEEEcccCC
Q psy6570 142 SINLNGKDRFVVYHTEDNGYKPYKL-EVFEDNLYFSTYRT---NNILKINKFGN 191 (713)
Q Consensus 142 ~~~~~g~~~~~~~~~~~~~~~p~~i-~~~~~~ly~td~~~---~~i~~~~~~~~ 191 (713)
++++++...+.+... .....++ +.+++.++++.... ..|++++..++
T Consensus 320 ~~d~~~~~~~~l~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 320 ILDPESGELVDAAGP---WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EEETTTTEEEECCSS---CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEECCCCcEEEecCC---CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 889887665444322 1122344 56666666554332 25666665444
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00076 Score=70.80 Aligned_cols=151 Identities=10% Similarity=-0.002 Sum_probs=95.5
Q ss_pred CCceeEEEccCcc-cEEecCCCCCceEEEec-cCCeEEEeecCCC--CCCeEEEEecCCceEEEEEcCCC-CCcceEEEc
Q psy6570 6 SGNVTRVKREMNL-KTVLSNLHDPRGVAVDW-VGKNLYWTDAGGR--SSNNIMVSTLEGRKKRTLLNTGL-NEPYDIALE 80 (713)
Q Consensus 6 ~~~I~~~~~~~~~-~~~~~~~~~p~gla~D~-~~~~ly~td~~~~--~~~~I~~~~~~G~~~~~l~~~~~-~~p~~iavD 80 (713)
...|+++++.+.. +.+.........+++.+ .++.|+++..... ...+|++++++|...+.+..... .....+++.
T Consensus 167 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s 246 (388)
T 3pe7_A 167 CCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWV 246 (388)
T ss_dssp CEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEEC
T ss_pred cceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceEC
Confidence 4678888987654 34444445567889998 7777766554211 14589999998877666553321 124467888
Q ss_pred CCCCcEEE-EccCCCC--eEEEEecCCCCcEEEEeCCC-----CCCeeEEEeCCCCeEEEEc--------CCCCcEEEEe
Q psy6570 81 PLSGRMFW-TELGIKP--RISGASIDGKNKFNLVDNNI-----QWPTGITIDYPSQRLYWAD--------PKARTIESIN 144 (713)
Q Consensus 81 ~~~~~ly~-td~~~~~--~I~~~~~dG~~~~~l~~~~~-----~~p~glavd~~~~~LY~~d--------~~~~~I~~~~ 144 (713)
|..+.|++ ++..... .|++.++++...+.+..... ..+.++++.+++++|+++- .....|+.++
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d 326 (388)
T 3pe7_A 247 PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN 326 (388)
T ss_dssp TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence 87777755 4433332 39999998877665543221 1256678888888888763 4566899999
Q ss_pred CCCCceeEEEec
Q psy6570 145 LNGKDRFVVYHT 156 (713)
Q Consensus 145 ~~g~~~~~~~~~ 156 (713)
+++...+.+...
T Consensus 327 ~~~~~~~~l~~~ 338 (388)
T 3pe7_A 327 MKNGTQHRVARH 338 (388)
T ss_dssp TTTTEEEEEEEC
T ss_pred ccCCceEEeccc
Confidence 988766655543
|
| >1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=5e-05 Score=52.46 Aligned_cols=36 Identities=31% Similarity=0.763 Sum_probs=30.4
Q ss_pred CCCCC---CCCCCcEEc--CCCCCeeccCCCCCCCCCCccc
Q psy6570 507 KCDTC---TCLNGGTCI--PNSKNNVCKCPSQYTGRRCECA 542 (713)
Q Consensus 507 ~C~~~---~C~~~g~C~--~~~~~~~C~C~~g~~G~~C~~~ 542 (713)
.|... ||.++|+|. +..++|+|.|++||+|.+|+..
T Consensus 2 ~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~ 42 (45)
T 1a3p_A 2 GXPSSYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQTR 42 (45)
T ss_dssp CCTTCCSSCCSSSCEEEECTTTSSEEEECCTTEETTTTCEE
T ss_pred CcccCCCCCCCCCCEEEeecCCCCEEEEcCCCCcCCcCCcc
Confidence 34445 899999997 6677999999999999999865
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00057 Score=77.74 Aligned_cols=185 Identities=6% Similarity=-0.029 Sum_probs=109.4
Q ss_pred CCceeEEEcc----CcccEEec-----CCCCCceEEEeccCCeEEEeecCC------CCCCeEEEEecCC------ceEE
Q psy6570 6 SGNVTRVKRE----MNLKTVLS-----NLHDPRGVAVDWVGKNLYWTDAGG------RSSNNIMVSTLEG------RKKR 64 (713)
Q Consensus 6 ~~~I~~~~~~----~~~~~~~~-----~~~~p~gla~D~~~~~ly~td~~~------~~~~~I~~~~~~G------~~~~ 64 (713)
..+|+.++++ +..+.+.. ....+.++++.+.++.|+++.... .....|++.++++ ...+
T Consensus 101 ~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 180 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR 180 (662)
T ss_dssp TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE
T ss_pred CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee
Confidence 5678888877 33333322 123467889999988888776410 0225799999988 5555
Q ss_pred EEEcCCCCCcceEEEcCCCCcEEEEccCC------CCeEEEEecCCC----CcEEEEeCCCCCCeeEEEeCCCCeEEEEc
Q psy6570 65 TLLNTGLNEPYDIALEPLSGRMFWTELGI------KPRISGASIDGK----NKFNLVDNNIQWPTGITIDYPSQRLYWAD 134 (713)
Q Consensus 65 ~l~~~~~~~p~~iavD~~~~~ly~td~~~------~~~I~~~~~dG~----~~~~l~~~~~~~p~glavd~~~~~LY~~d 134 (713)
.+..........+++.|..++|+|+.+.. ...|++.+++++ ..+.+.......+..++++++++ ||++.
T Consensus 181 ~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~ 259 (662)
T 3azo_A 181 ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVAT 259 (662)
T ss_dssp ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEE
T ss_pred EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEE
Confidence 44412234566789999888898876442 137999999853 33344432245677899998777 55554
Q ss_pred CCCC--cEEEEeCCCCceeEEEecCCCCcc------ceeeeee-CCeEEEEeC-CCCcEEEEcccCC
Q psy6570 135 PKAR--TIESINLNGKDRFVVYHTEDNGYK------PYKLEVF-EDNLYFSTY-RTNNILKINKFGN 191 (713)
Q Consensus 135 ~~~~--~I~~~~~~g~~~~~~~~~~~~~~~------p~~i~~~-~~~ly~td~-~~~~i~~~~~~~~ 191 (713)
...+ +|+++++++...+.+......... ...+++. +++++++.. ....|++++..++
T Consensus 260 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 326 (662)
T 3azo_A 260 DRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESG 326 (662)
T ss_dssp CTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTT
T ss_pred CCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCC
Confidence 3333 899999866554444332111111 2344543 455555433 3445666665443
|
| >2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A | Back alignment and structure |
|---|
Probab=97.56 E-value=2.1e-05 Score=57.88 Aligned_cols=40 Identities=25% Similarity=0.756 Sum_probs=33.8
Q ss_pred CCCC-CCCCCCC--CeEecCCCCcceeecCCCcc-cCCCCcCCCC
Q psy6570 592 SPSC-HNYCDNA--GLCSYSKQGKPVCTCVNGWS-GITCSERVSC 632 (713)
Q Consensus 592 ~~~C-~~~C~~~--g~C~~~~~g~~~C~C~~G~~-G~~C~~~~~C 632 (713)
.++| .++|.++ |+|.+.. ++|.|.|++||+ |..|+...+|
T Consensus 11 ~d~C~snPC~nga~gtC~~~~-g~y~C~C~~Gy~~G~~C~~~~~C 54 (61)
T 2k2s_B 11 PAACSSNPCGPEAAGTCKETN-SGYICRCNQGYRISLDGTGNVTC 54 (61)
T ss_dssp CCHHHHCSSCSSSCCEEEECS-SEEEEECCTTEEEEECSSSCEEE
T ss_pred CCcCcCCCCcCCCccccccCC-CceEeECCCCCccCCCCCCCCEe
Confidence 3778 7889998 8999887 899999999999 9999875444
|
| >1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A | Back alignment and structure |
|---|
Probab=97.54 E-value=3.6e-05 Score=53.21 Aligned_cols=36 Identities=31% Similarity=0.956 Sum_probs=26.9
Q ss_pred CCCCCC---CCCCCCcEEeecC--CCceeeCCCCCcCCCCCc
Q psy6570 552 ANKCTP---NYCSNNGTCVLIE--GKPSCKCLPPYSGKQCTE 588 (713)
Q Consensus 552 ~~~C~~---~~C~~~~~C~~~~--g~~~C~C~~G~~G~~C~~ 588 (713)
+++|.+ ++|.+ |+|.... ++|.|.|++||+|.+|+.
T Consensus 3 i~~C~~~~~~pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce~ 43 (46)
T 1k36_A 3 ITKCSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEH 43 (46)
T ss_dssp EECCCTTCCSSCSS-EEEEEETTTTEEEEEECTTCSSTTSCC
T ss_pred cccCCCCCCCCCCC-CEeeccCCCCCEEEECCCCCccCCCCc
Confidence 346665 78877 7888654 578888888888888864
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.019 Score=58.58 Aligned_cols=184 Identities=12% Similarity=0.010 Sum_probs=107.4
Q ss_pred CCceeEEEccCccc--EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCC
Q psy6570 6 SGNVTRVKREMNLK--TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLS 83 (713)
Q Consensus 6 ~~~I~~~~~~~~~~--~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~ 83 (713)
++.|...++..... .+.........+++.+.+..|+.. . ..+.|.+.++........+.........|++.|..
T Consensus 101 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g-~---~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg 176 (321)
T 3ow8_A 101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATG-T---HVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDG 176 (321)
T ss_dssp TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEE-C---TTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTS
T ss_pred CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEE-c---CCCcEEEEEcCCCceeEEecCCCceEEEEEECCCC
Confidence 45566666654332 223334456789999876666544 3 46788888887655444443444567889999865
Q ss_pred CcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccc
Q psy6570 84 GRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKP 163 (713)
Q Consensus 84 ~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p 163 (713)
.+|..... .. .|...++........+.........|++++.+..|+.+ ...+.|...++........+.. .....
T Consensus 177 ~~lasg~~-dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~--h~~~v 251 (321)
T 3ow8_A 177 KYLASGAI-DG-IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTA-SDDGYIKIYDVQHANLAGTLSG--HASWV 251 (321)
T ss_dssp SEEEEEET-TS-CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEE-CTTSCEEEEETTTCCEEEEECC--CSSCE
T ss_pred CEEEEEcC-CC-eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEE-cCCCeEEEEECCCcceeEEEcC--CCCce
Confidence 55555443 23 67777776543333333334456889999866655544 4567788888765443333222 12233
Q ss_pred eeeeee-CCeEEEEeCCCCcEEEEcccCCCcceeee
Q psy6570 164 YKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLA 198 (713)
Q Consensus 164 ~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~ 198 (713)
..+++. ++.++++....+.|...+...+.....+.
T Consensus 252 ~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 287 (321)
T 3ow8_A 252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF 287 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc
Confidence 556654 34455555566778777765554444443
|
| >1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00011 Score=52.76 Aligned_cols=36 Identities=36% Similarity=0.979 Sum_probs=31.1
Q ss_pred CCCCC---CCCCCcEEc--CCCCCeeccCCCCCCCCCCccc
Q psy6570 507 KCDTC---TCLNGGTCI--PNSKNNVCKCPSQYTGRRCECA 542 (713)
Q Consensus 507 ~C~~~---~C~~~g~C~--~~~~~~~C~C~~g~~G~~C~~~ 542 (713)
.|.+. ||.++|+|+ +..++|+|.|++||+|.+|+..
T Consensus 5 ~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~ 45 (53)
T 1egf_A 5 GCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR 45 (53)
T ss_dssp CCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCCSSSSCCC
T ss_pred cCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCcCCcCCcc
Confidence 45554 899999999 7888999999999999999865
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.017 Score=58.61 Aligned_cols=177 Identities=10% Similarity=0.000 Sum_probs=108.4
Q ss_pred CCceeEEEccCcccE----EecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcC
Q psy6570 6 SGNVTRVKREMNLKT----VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEP 81 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~----~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~ 81 (713)
++.|...++...... +......+..+++.+.++.|+.... .+.|.+.++........+......+..|+++|
T Consensus 118 d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 193 (337)
T 1gxr_A 118 ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS----DGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193 (337)
T ss_dssp SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred CCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC----CCcEEEEeCCCCceeeeeecccCceEEEEECC
Confidence 466777776654311 1223344578888887666665543 67899999876554444444446788999998
Q ss_pred CCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCc
Q psy6570 82 LSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGY 161 (713)
Q Consensus 82 ~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~ 161 (713)
....|+... ... .|...++........+. .......+++++.+..|+++. ..+.|+.+++.......+... ..
T Consensus 194 ~~~~l~~~~-~dg-~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~~~~~~~~~---~~ 266 (337)
T 1gxr_A 194 DGTKLWTGG-LDN-TVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKYQLHLH---ES 266 (337)
T ss_dssp TSSEEEEEE-TTS-EEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEEEECCC---SS
T ss_pred CCCEEEEEe-cCC-cEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEc-CCCcEEEEECCCCCeEEEcCC---cc
Confidence 655555544 333 78888887654433333 334568899998777776665 456788888877655443322 22
Q ss_pred cceeeeee-CCeEEEEeCCCCcEEEEcccCCCc
Q psy6570 162 KPYKLEVF-EDNLYFSTYRTNNILKINKFGNSD 193 (713)
Q Consensus 162 ~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~ 193 (713)
....+++. ++.++++....+.|..++...+..
T Consensus 267 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred ceeEEEECCCCCEEEEecCCCcEEEEECCCCeE
Confidence 34556655 344455555567777777654433
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0092 Score=63.71 Aligned_cols=179 Identities=8% Similarity=0.023 Sum_probs=112.5
Q ss_pred cCCceeEEEccC----------cc--cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceE-------EE
Q psy6570 5 SSGNVTRVKREM----------NL--KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKK-------RT 65 (713)
Q Consensus 5 ~~~~I~~~~~~~----------~~--~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~-------~~ 65 (713)
.++.|..+++.. .. ..+......+.+|++.+.+..++++-. ..+.|.+.+++.... ..
T Consensus 149 ~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~ 225 (430)
T 2xyi_A 149 PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS---DDHTICLWDINATPKEHRVIDAKN 225 (430)
T ss_dssp SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC---TTSCEEEEETTSCCBGGGEEECSE
T ss_pred CCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe---CCCeEEEEeCCCCCCCCceeccce
Confidence 356777777654 11 122333445788999887663555555 578899998875211 11
Q ss_pred EEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCC---CcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEE
Q psy6570 66 LLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGK---NKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIES 142 (713)
Q Consensus 66 l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~---~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~ 142 (713)
.+......+..|++.|.++.++++..... .|...++... .....+...-..++.|++++....++++-...+.|..
T Consensus 226 ~~~~h~~~v~~v~~~p~~~~~l~s~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~v 304 (430)
T 2xyi_A 226 IFTGHTAVVEDVAWHLLHESLFGSVADDQ-KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 304 (430)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTS-EEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred eecCCCCCEeeeEEeCCCCCEEEEEeCCC-eEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEE
Confidence 22222356889999987888888876555 8888888754 2222333445567899999888878888777788999
Q ss_pred EeCCCC-c-eeEEEecCCCCccceeeeee--CCeEEEEeCCCCcEEEEcccC
Q psy6570 143 INLNGK-D-RFVVYHTEDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKFG 190 (713)
Q Consensus 143 ~~~~g~-~-~~~~~~~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~ 190 (713)
.++... . ...+... ......|.+. +..++++....+.|..++...
T Consensus 305 wd~~~~~~~~~~~~~h---~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 305 WDLRNLKLKLHSFESH---KDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp EETTCTTSCSEEEECC---SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred EeCCCCCCCeEEeecC---CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 998652 2 2333222 2233455554 446777776777777776543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.017 Score=60.93 Aligned_cols=184 Identities=10% Similarity=0.030 Sum_probs=111.9
Q ss_pred cCCceeEEEccCccc---EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcC
Q psy6570 5 SSGNVTRVKREMNLK---TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEP 81 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~---~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~ 81 (713)
.++.|...++..... .+......+.+|++.+.+..|+... ..+.|.+.++........+......+..|++.|
T Consensus 194 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p 269 (401)
T 4aez_A 194 RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG----NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP 269 (401)
T ss_dssp TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTCSSEEEEECCCSSCCCEEEECT
T ss_pred CCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe----CCCeEEEccCCCCCccEEecCCcceEEEEEECC
Confidence 356666677663222 2233445568888988655555443 467899999876554444434446788999999
Q ss_pred CCCcEEEEccC-CCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEc-CCCCcEEEEeCCCCceeEEEecCCC
Q psy6570 82 LSGRMFWTELG-IKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWAD-PKARTIESINLNGKDRFVVYHTEDN 159 (713)
Q Consensus 82 ~~~~ly~td~~-~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d-~~~~~I~~~~~~g~~~~~~~~~~~~ 159 (713)
....|+.+..+ ....|...++........+. .-.....|++++....|+.+. ...+.|...++.......+......
T Consensus 270 ~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h 348 (401)
T 4aez_A 270 WQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH 348 (401)
T ss_dssp TSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC
T ss_pred CCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC
Confidence 88888887642 23478888887655544443 334578999998887777764 3567788888765433333221111
Q ss_pred Cccceeeeee-CCeEEEEeCCCCcEEEEcccCCCc
Q psy6570 160 GYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSD 193 (713)
Q Consensus 160 ~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~ 193 (713)
......+++. ++.++++....+.|..++...+..
T Consensus 349 ~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 349 DTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp SSCCCEEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence 2234555554 344455555667777777655543
|
| >1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A | Back alignment and structure |
|---|
Probab=97.41 E-value=5e-05 Score=56.87 Aligned_cols=36 Identities=33% Similarity=0.886 Sum_probs=29.7
Q ss_pred CCCCCCCCCCCcEEee-----cCCCceeeCCCCCcCCCCCc
Q psy6570 553 NKCTPNYCSNNGTCVL-----IEGKPSCKCLPPYSGKQCTE 588 (713)
Q Consensus 553 ~~C~~~~C~~~~~C~~-----~~g~~~C~C~~G~~G~~C~~ 588 (713)
++|.+++|.++|+|++ ..++|+|.|++||+|..|+.
T Consensus 7 ~~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~ 47 (63)
T 1hae_A 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTE 47 (63)
T ss_dssp CHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCE
T ss_pred CCCCCCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccCc
Confidence 4677788988899986 45788999999999999874
|
| >1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A | Back alignment and structure |
|---|
Probab=97.39 E-value=4e-05 Score=57.42 Aligned_cols=37 Identities=27% Similarity=0.680 Sum_probs=30.6
Q ss_pred CCCcCCCCCCCCCcEecc-----CCCCccccCCCCCcCCCCc
Q psy6570 414 TCQQCLNLKCQNGGVCVN-----KTTGLECDCPKFYYGKNCQ 450 (713)
Q Consensus 414 ~C~~C~~~~C~~~~~C~~-----~~~~~~C~C~~G~~g~~C~ 450 (713)
.|.+|.+.||.++|+|++ ..++|.|.|++||+|..|+
T Consensus 5 ~c~~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce 46 (63)
T 1hae_A 5 KCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46 (63)
T ss_dssp ECCHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSC
T ss_pred ccCCCCCCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccC
Confidence 355677788999999986 5678999999999999997
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0061 Score=63.76 Aligned_cols=180 Identities=11% Similarity=0.032 Sum_probs=105.6
Q ss_pred ceeEEEccCcccEE-ecCCCCC-ceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCc--ceEEEcCCC
Q psy6570 8 NVTRVKREMNLKTV-LSNLHDP-RGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEP--YDIALEPLS 83 (713)
Q Consensus 8 ~I~~~~~~~~~~~~-~~~~~~p-~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p--~~iavD~~~ 83 (713)
.|+.+++.+..... ......+ .++++.+.++.|+++.. ...|++.++++...+.+........ ...++++..
T Consensus 61 ~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~----~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg 136 (388)
T 3pe7_A 61 NYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD----GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDC 136 (388)
T ss_dssp EEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET----TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS
T ss_pred eEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC----CCeEEEEECCCCcceeeeechhhcccccceeECCCC
Confidence 47777877654332 2222222 36789998889998875 4689999998876665554322211 123346544
Q ss_pred CcEEEEc--------------------cCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeC-CCCeEEEEcCC-----C
Q psy6570 84 GRMFWTE--------------------LGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDY-PSQRLYWADPK-----A 137 (713)
Q Consensus 84 ~~ly~td--------------------~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~-~~~~LY~~d~~-----~ 137 (713)
.+|+... ......|++.++++...+.+.. .......++++| ++++|+++... .
T Consensus 137 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~ 215 (388)
T 3pe7_A 137 TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ-ENQWLGHPIYRPYDDSTVAFCHEGPHDLVD 215 (388)
T ss_dssp SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE-ESSCEEEEEEETTEEEEEEEEECSCTTTSS
T ss_pred CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec-CCccccccEECCCCCCEEEEEEecCCCCCc
Confidence 4443221 1122479999998776666654 234467899998 77777665432 4
Q ss_pred CcEEEEeCCCCceeEEEecCCCCcccee--eeeeCCeEEE-EeCCCC---cEEEEcccCCCc
Q psy6570 138 RTIESINLNGKDRFVVYHTEDNGYKPYK--LEVFEDNLYF-STYRTN---NILKINKFGNSD 193 (713)
Q Consensus 138 ~~I~~~~~~g~~~~~~~~~~~~~~~p~~--i~~~~~~ly~-td~~~~---~i~~~~~~~~~~ 193 (713)
.+|+.+++++...+.+..... ...... +..++.+|++ ++.... .|+.++..++..
T Consensus 216 ~~l~~~d~~~~~~~~l~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 216 ARMWLINEDGTNMRKVKTHAE-GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN 276 (388)
T ss_dssp CSEEEEETTSCCCEESCCCCT-TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred ceEEEEeCCCCceEEeeeCCC-CcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence 589999998877665543311 011122 2334556744 433222 288888766543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0064 Score=63.61 Aligned_cols=182 Identities=8% Similarity=-0.025 Sum_probs=105.6
Q ss_pred cCCceeEEEccCcc-cEEecCCCCCceEEEec-cCCeEEEeecCCCCC----CeEEEEecCCceEEEEEcCC-CCCcceE
Q psy6570 5 SSGNVTRVKREMNL-KTVLSNLHDPRGVAVDW-VGKNLYWTDAGGRSS----NNIMVSTLEGRKKRTLLNTG-LNEPYDI 77 (713)
Q Consensus 5 ~~~~I~~~~~~~~~-~~~~~~~~~p~gla~D~-~~~~ly~td~~~~~~----~~I~~~~~~G~~~~~l~~~~-~~~p~~i 77 (713)
....|+.+++.+.. +.+.........+++.+ .+++|+++... .. .+|+++++++...+.+.... ...+..+
T Consensus 166 ~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~--~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 243 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEG--PHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHE 243 (396)
T ss_dssp CCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECS--CSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEE
T ss_pred CcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecC--CCCCCCceEEEEECCCCceeEeeccCCCccccce
Confidence 34578888887644 33344445566788887 55656665432 22 57999999887655554321 2246678
Q ss_pred EEcCCCCcEEEEcc-CCCCe--EEEEecCCCCcEEEEeCCCCCCeeEEEeC-CCCeEEEEc---------------CCCC
Q psy6570 78 ALEPLSGRMFWTEL-GIKPR--ISGASIDGKNKFNLVDNNIQWPTGITIDY-PSQRLYWAD---------------PKAR 138 (713)
Q Consensus 78 avD~~~~~ly~td~-~~~~~--I~~~~~dG~~~~~l~~~~~~~p~glavd~-~~~~LY~~d---------------~~~~ 138 (713)
++.|..++|+++.. ..... |++.++++...+.+.... ... +++.+ ++..|+++. ....
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~ 320 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDP 320 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCC
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCC
Confidence 99987777777632 22224 999998876655554322 112 78887 565555432 1346
Q ss_pred cEEEEeCCCCceeEEEecCCCC----------ccceeeeeeCCeEEEEeCC--CCcEEEEcccCC
Q psy6570 139 TIESINLNGKDRFVVYHTEDNG----------YKPYKLEVFEDNLYFSTYR--TNNILKINKFGN 191 (713)
Q Consensus 139 ~I~~~~~~g~~~~~~~~~~~~~----------~~p~~i~~~~~~ly~td~~--~~~i~~~~~~~~ 191 (713)
.|+.+++++...+.+....... .....+..++.+|+++... ...|++++..++
T Consensus 321 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 321 FLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp EEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred cEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 7999998876655554432110 1112333446677776533 334666665433
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.023 Score=59.78 Aligned_cols=182 Identities=9% Similarity=-0.044 Sum_probs=107.1
Q ss_pred CCceeEEEccCc-------c--cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEE--cCCCCCc
Q psy6570 6 SGNVTRVKREMN-------L--KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLL--NTGLNEP 74 (713)
Q Consensus 6 ~~~I~~~~~~~~-------~--~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~--~~~~~~p 74 (713)
++.|...++... . ..+......+..|++.+.+.+++++-. ..+.|.+.++........+ ......+
T Consensus 103 dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v 179 (402)
T 2aq5_A 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG---CDNVILVWDVGTGAAVLTLGPDVHPDTI 179 (402)
T ss_dssp TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE---TTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEc---CCCEEEEEECCCCCccEEEecCCCCCce
Confidence 455666665543 1 122223445678899887655666655 5678999998765544444 3334567
Q ss_pred ceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEE-eCCC-CCCeeEEEeCCCCeEEEEc--CCCCcEEEEeCCCCce
Q psy6570 75 YDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLV-DNNI-QWPTGITIDYPSQRLYWAD--PKARTIESINLNGKDR 150 (713)
Q Consensus 75 ~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~-~~~~-~~p~glavd~~~~~LY~~d--~~~~~I~~~~~~g~~~ 150 (713)
..|++.|....|+.+. ... .|...++........+ .... ..+..+++.+.+..|+..- ...+.|...++.....
T Consensus 180 ~~~~~~~~~~~l~~~~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 180 YSVDWSRDGALICTSC-RDK-RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE 257 (402)
T ss_dssp EEEEECTTSSCEEEEE-TTS-EEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred EEEEECCCCCEEEEEe-cCC-cEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC
Confidence 8999998555555554 333 7888887654433333 2222 2368899997654444432 4667888888865432
Q ss_pred -eEEEecCCCCccceeeeee--CCeEEEEeCCCCcEEEEcccCCCc
Q psy6570 151 -FVVYHTEDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKFGNSD 193 (713)
Q Consensus 151 -~~~~~~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~ 193 (713)
..+.... .......+++. +..||++....+.|..++...+..
T Consensus 258 ~~~~~~~~-~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 258 PLSLQELD-TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp CSEEEECC-CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred CceEEecc-CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 2222211 12234445544 567777776677888887765553
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0089 Score=63.83 Aligned_cols=179 Identities=11% Similarity=0.048 Sum_probs=112.0
Q ss_pred cCCceeEEEccCcc---c------EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCc----eEEEEEcCCC
Q psy6570 5 SSGNVTRVKREMNL---K------TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR----KKRTLLNTGL 71 (713)
Q Consensus 5 ~~~~I~~~~~~~~~---~------~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~----~~~~l~~~~~ 71 (713)
.++.|...++.... . .+......+..|++.+.++.++++.. ..+.|.+.++... ....+ ....
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~---~dg~i~i~d~~~~~~~~~~~~~-~~~~ 277 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA---DDQKLMIWDTRNNNTSKPSHTV-DAHT 277 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE---TTSEEEEEETTCSCSSSCSEEE-ECCS
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe---CCCeEEEEECCCCCCCcceeEe-ecCC
Confidence 45677777766511 1 11223344778999887788888877 6789999998754 23333 2333
Q ss_pred CCcceEEEcCCCCcEEEEccCCCCeEEEEecCC-CCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCc-
Q psy6570 72 NEPYDIALEPLSGRMFWTELGIKPRISGASIDG-KNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKD- 149 (713)
Q Consensus 72 ~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG-~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~- 149 (713)
..+..|++.|....++++..... .|...++.. ......+.........|++++.+..|+++-...++|...++....
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg-~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADK-TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTS-EEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred CCeEEEEeCCCCCCEEEEEeCCC-eEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 66889999998777887765544 788888875 333333333455678999998887888877667777777765411
Q ss_pred -----------eeEEEecCCCCccceeeeee--CCeEEEEeCCCCcEEEEcc
Q psy6570 150 -----------RFVVYHTEDNGYKPYKLEVF--EDNLYFSTYRTNNILKINK 188 (713)
Q Consensus 150 -----------~~~~~~~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~ 188 (713)
...+.........+..+++. +.+++++....+.|..++.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp CCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred ccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 12333222223345666665 3336666666666555543
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.02 Score=58.07 Aligned_cols=165 Identities=15% Similarity=0.198 Sum_probs=100.9
Q ss_pred CCceeEEEccCcccEE-ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCC
Q psy6570 6 SGNVTRVKREMNLKTV-LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSG 84 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~-~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~ 84 (713)
.+.|+++++++..... .........+++|. .+.||+... .+.|++++.+|+....+. ........+++|. ++
T Consensus 116 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~-~g~l~vgt~----~~~l~~~d~~g~~~~~~~-~~~~~~~~~~~d~-~g 188 (330)
T 3hxj_A 116 DGHLYAINTDGTEKWRFKTKKAIYATPIVSE-DGTIYVGSN----DNYLYAINPDGTEKWRFK-TNDAITSAASIGK-DG 188 (330)
T ss_dssp TSEEEEECTTSCEEEEEECSSCCCSCCEECT-TSCEEEECT----TSEEEEECTTSCEEEEEE-CSSCCCSCCEECT-TC
T ss_pred CCEEEEEcCCCCEEEEEcCCCceeeeeEEcC-CCEEEEEcC----CCEEEEECCCCCEeEEEe-cCCCceeeeEEcC-CC
Confidence 4667788877432211 22223345667774 467877653 578999998865544333 2234566788884 67
Q ss_pred cEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccce
Q psy6570 85 RMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPY 164 (713)
Q Consensus 85 ~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~ 164 (713)
.||++. . .|++++.+|....... ........+++|. +++||++.. .+.|++++.+|.....+... ...+.
T Consensus 189 ~l~v~t---~-~l~~~d~~g~~~~~~~-~~~~~~~~~~~~~-~g~l~v~t~-~~gl~~~~~~g~~~~~~~~~---~~~~~ 258 (330)
T 3hxj_A 189 TIYFGS---D-KVYAINPDGTEKWNFY-AGYWTVTRPAISE-DGTIYVTSL-DGHLYAINPDGTEKWRFKTG---KRIES 258 (330)
T ss_dssp CEEEES---S-SEEEECTTSCEEEEEC-CSSCCCSCCEECT-TSCEEEEET-TTEEEEECTTSCEEEEEECS---SCCCS
T ss_pred EEEEEe---C-EEEEECCCCcEEEEEc-cCCcceeceEECC-CCeEEEEcC-CCeEEEECCCCCEeEEeeCC---CCccc
Confidence 888877 3 7888886665433332 2334567888884 568888764 46788888777654433322 12233
Q ss_pred eeeee-CCeEEEEeCCCCcEEEEcc
Q psy6570 165 KLEVF-EDNLYFSTYRTNNILKINK 188 (713)
Q Consensus 165 ~i~~~-~~~ly~td~~~~~i~~~~~ 188 (713)
.+.++ ++.||++.. .+.|+++++
T Consensus 259 ~~~~~~~g~l~v~t~-~ggl~~~d~ 282 (330)
T 3hxj_A 259 SPVIGNTDTIYFGSY-DGHLYAINP 282 (330)
T ss_dssp CCEECTTSCEEEECT-TCEEEEECT
T ss_pred cceEcCCCeEEEecC-CCCEEEECC
Confidence 45555 677877754 457888886
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0021 Score=71.85 Aligned_cols=170 Identities=8% Similarity=-0.026 Sum_probs=103.2
Q ss_pred ceeEEEc--cCcccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCc
Q psy6570 8 NVTRVKR--EMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGR 85 (713)
Q Consensus 8 ~I~~~~~--~~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ 85 (713)
+|+.+++ ++... .+........+++.+..+.++++.. ..+.+.+.++++...+.+..... ..++++|..++
T Consensus 91 ~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~---~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~ 163 (582)
T 3o4h_A 91 ALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGA---TEDRVALYALDGGGLRELARLPG---FGFVSDIRGDL 163 (582)
T ss_dssp EEEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEE---CSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTE
T ss_pred EEEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEec---CCCCceEEEccCCcEEEeecCCC---ceEEECCCCCE
Confidence 5666776 55433 2333334445667666666655544 34445577887766665554322 78999998888
Q ss_pred EEEEccC--CCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCC-CcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 86 MFWTELG--IKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKA-RTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 86 ly~td~~--~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~-~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
|+++... ....|++.++++...+.|.. .......++++|++++|+.++... .+|+++++++...+ +..... ..
T Consensus 164 la~~~~~~~~~~~i~~~d~~~g~~~~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~--~~ 239 (582)
T 3o4h_A 164 IAGLGFFGGGRVSLFTSNLSSGGLRVFDS-GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS--KD 239 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCCEEECC-SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC--SH
T ss_pred EEEEEEcCCCCeEEEEEcCCCCCceEeec-CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC--cC
Confidence 8866432 22379999988777666643 334458899999999999665432 48999999887766 433211 12
Q ss_pred ceeee--------ee-CCeEEEEeCCCCcEEEEcc
Q psy6570 163 PYKLE--------VF-EDNLYFSTYRTNNILKINK 188 (713)
Q Consensus 163 p~~i~--------~~-~~~ly~td~~~~~i~~~~~ 188 (713)
..+++ +. +++||++....+.+..+..
T Consensus 240 ~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 240 FSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 22222 32 2367766555555544443
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.023 Score=58.68 Aligned_cols=178 Identities=11% Similarity=-0.019 Sum_probs=104.9
Q ss_pred cCCceeEEEccCcccE--E---e-cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEE
Q psy6570 5 SSGNVTRVKREMNLKT--V---L-SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIA 78 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~~--~---~-~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia 78 (713)
.++.|...++...... . . ..-.....|++.+.+..|+ +-. ..+.|.+.++........+.........++
T Consensus 101 ~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~-sgs---~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~ 176 (344)
T 4gqb_B 101 DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAV-SGS---KDICIKVWDLAQQVVLSSYRAHAAQVTCVA 176 (344)
T ss_dssp TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEE-EEE---TTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEE-EEe---CCCeEEEEECCCCcEEEEEcCcCCceEEEE
Confidence 3566666666653321 1 1 1233467899988766555 444 467899999876554444433346678899
Q ss_pred EcCCCCcEEEEccCCCCeEEEEecCCCCcEEEE--eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCc-eeEEEe
Q psy6570 79 LEPLSGRMFWTELGIKPRISGASIDGKNKFNLV--DNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKD-RFVVYH 155 (713)
Q Consensus 79 vD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~--~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~-~~~~~~ 155 (713)
+.+....++++-.... .|..-++........+ ......+..+++.+.+++++++-...+.|...++.... ...+..
T Consensus 177 ~~~~~~~~l~s~s~D~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~ 255 (344)
T 4gqb_B 177 ASPHKDSVFLSCSEDN-RILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV 255 (344)
T ss_dssp ECSSCTTEEEEEETTS-CEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC
T ss_pred ecCCCCCceeeecccc-ccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC
Confidence 9987777877765444 6777777644333222 12234567899998888888876677888888876433 333322
Q ss_pred cCCCCccceeeeee--CCeEEEEeCCCCcEEEEcccC
Q psy6570 156 TEDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKFG 190 (713)
Q Consensus 156 ~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~ 190 (713)
. ...-..|++. +.+++.+-...+.|+..+...
T Consensus 256 h---~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~ 289 (344)
T 4gqb_B 256 H---SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL 289 (344)
T ss_dssp C---SSCEEEEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred C---CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence 2 1223445543 335555555566677776543
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.049 Score=55.02 Aligned_cols=176 Identities=13% Similarity=0.075 Sum_probs=103.5
Q ss_pred CCceeEEEccCcc--cEE--e---cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceE--EEEEcCCCCCcce
Q psy6570 6 SGNVTRVKREMNL--KTV--L---SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKK--RTLLNTGLNEPYD 76 (713)
Q Consensus 6 ~~~I~~~~~~~~~--~~~--~---~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~--~~l~~~~~~~p~~ 76 (713)
++.|...++.... ..+ . .....+..+++.+.++.|+... ..+.|.+.+++.... ...+......+..
T Consensus 71 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~ 146 (337)
T 1gxr_A 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG----EASTLSIWDLAAPTPRIKAELTSSAPACYA 146 (337)
T ss_dssp BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE----SSSEEEEEECCCC--EEEEEEECSSSCEEE
T ss_pred CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEc----CCCcEEEEECCCCCcceeeecccCCCceEE
Confidence 5666666665432 111 1 2334467889988766666554 367899999876552 2223333456788
Q ss_pred EEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEec
Q psy6570 77 IALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHT 156 (713)
Q Consensus 77 iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~ 156 (713)
|++.|....|+..... . .|...++........+.........|++++.+.+|+.+. ..+.|...++...........
T Consensus 147 ~~~~~~~~~l~~~~~d-g-~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~ 223 (337)
T 1gxr_A 147 LAISPDSKVCFSCCSD-G-NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLREGRQLQQHDF 223 (337)
T ss_dssp EEECTTSSEEEEEETT-S-CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEEeCC-C-cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe-cCCcEEEEECCCCceEeeecC
Confidence 9999866566655432 3 688888876544444444455678999998766666554 567888888876544333322
Q ss_pred CCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCC
Q psy6570 157 EDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGN 191 (713)
Q Consensus 157 ~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~ 191 (713)
......+++. ++.++++....+.|..++....
T Consensus 224 ---~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~ 256 (337)
T 1gxr_A 224 ---TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256 (337)
T ss_dssp ---SSCEEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred ---CCceEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 2234455553 2333344445566777765543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0047 Score=70.69 Aligned_cols=181 Identities=11% Similarity=-0.004 Sum_probs=103.7
Q ss_pred CCceeEEEccCcccEEec-C---CCCCceEEEeccCCeEEEeecCC-CCCCeEEEEecCCc-eEEEEEcCC----CCCcc
Q psy6570 6 SGNVTRVKREMNLKTVLS-N---LHDPRGVAVDWVGKNLYWTDAGG-RSSNNIMVSTLEGR-KKRTLLNTG----LNEPY 75 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~-~---~~~p~gla~D~~~~~ly~td~~~-~~~~~I~~~~~~G~-~~~~l~~~~----~~~p~ 75 (713)
..+|+.+++.+.....+. . ...+..+++.+.++.|+++.... .....|.+.++++. ..+.+.... .....
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~ 313 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLH 313 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCS
T ss_pred eeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccC
Confidence 356788888765432222 1 12356788888888888865411 01247888998765 544444221 12236
Q ss_pred eEEEcC--CCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCee-EEEeCCCCeEEEEcCCC----CcEEEEeCCCC
Q psy6570 76 DIALEP--LSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTG-ITIDYPSQRLYWADPKA----RTIESINLNGK 148 (713)
Q Consensus 76 ~iavD~--~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~g-lavd~~~~~LY~~d~~~----~~I~~~~~~g~ 148 (713)
.+++.| ..++||.++.....+|+.++++|...+.+.. ....... +++++++++||++.... .+|+++++++.
T Consensus 314 ~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~-~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 314 PLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK-GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp CCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC-SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred CceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC-CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 788987 5555655554433488888877765554432 2112233 79999888999886554 38999998776
Q ss_pred ceeEEEecCCCCccceeeee--eCCeEEEEeCC---CCcEEEEcccCC
Q psy6570 149 DRFVVYHTEDNGYKPYKLEV--FEDNLYFSTYR---TNNILKINKFGN 191 (713)
Q Consensus 149 ~~~~~~~~~~~~~~p~~i~~--~~~~ly~td~~---~~~i~~~~~~~~ 191 (713)
..+.+... .....+++ ++.+|+++... ...|+.++..++
T Consensus 393 ~~~~l~~~----~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 393 KTKDLTPE----SGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp CCEESCCS----SSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred CceeccCC----CceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 54444321 12233333 34455444222 244666665444
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0042 Score=71.10 Aligned_cols=165 Identities=12% Similarity=0.027 Sum_probs=99.1
Q ss_pred CceEEEeccCCeEEEeecCC-----------------------------CCCCeEEEEecCCceEEEEEcC--CCCCcce
Q psy6570 28 PRGVAVDWVGKNLYWTDAGG-----------------------------RSSNNIMVSTLEGRKKRTLLNT--GLNEPYD 76 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~-----------------------------~~~~~I~~~~~~G~~~~~l~~~--~~~~p~~ 76 (713)
+.++++.+.++.|+++.... .....|.+.++++...+.+... ....+..
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 262 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN 262 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence 58899999888888775200 0235688899887665444321 1234668
Q ss_pred EEEcCCCCcEEEEccCC---CCeEEEEecCCC-CcEEEEeC-CC---CCCeeEEEeC--CCCeEEEEcC-CCCcEEEEeC
Q psy6570 77 IALEPLSGRMFWTELGI---KPRISGASIDGK-NKFNLVDN-NI---QWPTGITIDY--PSQRLYWADP-KARTIESINL 145 (713)
Q Consensus 77 iavD~~~~~ly~td~~~---~~~I~~~~~dG~-~~~~l~~~-~~---~~p~glavd~--~~~~LY~~d~-~~~~I~~~~~ 145 (713)
+++.|..++|+++.... ...|++.++++. ..+.+... .. .....+++.+ +++.||.++. +..+|+.++.
T Consensus 263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~ 342 (706)
T 2z3z_A 263 LSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDT 342 (706)
T ss_dssp EEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEET
T ss_pred EEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEEC
Confidence 99998777788854332 136888888765 44444421 11 1236789987 6666666653 4467888888
Q ss_pred CCCceeEEEecCCCCccceeeeeeCCeEEEEeCCCC----cEEEEcccCCC
Q psy6570 146 NGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTN----NILKINKFGNS 192 (713)
Q Consensus 146 ~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~~~----~i~~~~~~~~~ 192 (713)
++...+.+...........+++.+++.||++....+ .|++++..++.
T Consensus 343 ~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 343 TGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp TSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred CCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 776555543321111111234445667888765544 78888765543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.01 Score=60.91 Aligned_cols=167 Identities=10% Similarity=0.073 Sum_probs=101.8
Q ss_pred CCceeEEEccCcccEEecCCCCCceEEEeccCCeEEEeecCC-CCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCC
Q psy6570 6 SGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGG-RSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSG 84 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~-~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~ 84 (713)
...|+.+++++.....+ ..+..+++.+.++.|+++.... .....|++.++++...+.+.... . ...+++.|..+
T Consensus 42 ~~~l~~~d~~~~~~~~l---~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~ 116 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI---ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSR 116 (347)
T ss_dssp EEEEEEEETTTCCEEEE---ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSS
T ss_pred cceEEEEeCCCCceEEc---ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCC
Confidence 45677777776443223 5667789998888888765411 01345899998876666555433 2 78899988777
Q ss_pred cEEEEccC-------------------------CCCeEEEEecCCCCc-EEEEeCCCCCCeeEEEeCCCCeEEEEcCC--
Q psy6570 85 RMFWTELG-------------------------IKPRISGASIDGKNK-FNLVDNNIQWPTGITIDYPSQRLYWADPK-- 136 (713)
Q Consensus 85 ~ly~td~~-------------------------~~~~I~~~~~dG~~~-~~l~~~~~~~p~glavd~~~~~LY~~d~~-- 136 (713)
.|+++... ...+|++.++++... +.+.. . ....+++++++ .+|.+...
T Consensus 117 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~--~~~~~~~spdg-~~~~~~~~~~ 192 (347)
T 2gop_A 117 KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P--RFSSGIWHRDK-IVVNVPHREI 192 (347)
T ss_dssp EEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E--TTCEEEEETTE-EEEEEECCCS
T ss_pred EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C--CcccccCCCCe-EEEEEecccc
Confidence 78877421 023788899887655 44544 3 66789999776 66666432
Q ss_pred ------CCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEeCC-------CCcEEEEc
Q psy6570 137 ------ARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYR-------TNNILKIN 187 (713)
Q Consensus 137 ------~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~-------~~~i~~~~ 187 (713)
..+|+.++ .|. .+.+... . ....+..++.+|+++... ...|+.++
T Consensus 193 ~~~~~~~~~l~~~d-~~~-~~~l~~~-~---~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 193 IPQYFKFWDIYIWE-DGK-EEKMFEK-V---SFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp SCCSSCCEEEEEEE-TTE-EEEEEEE-E---SEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred cccccccccEEEeC-CCc-eEEeccC-c---ceeeECCCCCEEEEEEccccCCccccceEEEEC
Confidence 34688888 443 3333322 1 112234556667665432 24577666
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0049 Score=65.02 Aligned_cols=189 Identities=10% Similarity=0.075 Sum_probs=107.9
Q ss_pred cCCceeEEEccC---cccEE---ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCce------EEEEE---cC
Q psy6570 5 SSGNVTRVKREM---NLKTV---LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK------KRTLL---NT 69 (713)
Q Consensus 5 ~~~~I~~~~~~~---~~~~~---~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~------~~~l~---~~ 69 (713)
.++.|...++.. ..+.+ ......+..|++.+.++.++++-. ..+.|.+.++.... ..... ..
T Consensus 87 ~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 163 (416)
T 2pm9_A 87 DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGG---NNGEIFIWDMNKCTESPSNYTPLTPGQSMS 163 (416)
T ss_dssp SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEEC---SSSCEEBCBTTTTSSCTTTCCCBCCCCSCC
T ss_pred cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEc---CCCeEEEEECCCCccccccccccccccccC
Confidence 356677776665 11111 223345688999887444444544 46789998887654 21111 12
Q ss_pred CCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCC------CCCCeeEEEeCCCCeEEEEcCCCC---cE
Q psy6570 70 GLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNN------IQWPTGITIDYPSQRLYWADPKAR---TI 140 (713)
Q Consensus 70 ~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~------~~~p~glavd~~~~~LY~~d~~~~---~I 140 (713)
....+..|++.|..+.++++-.... .|...++........+... ......|++++.+..++++-...+ .|
T Consensus 164 ~~~~v~~~~~~~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i 242 (416)
T 2pm9_A 164 SVDEVISLAWNQSLAHVFASAGSSN-FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI 242 (416)
T ss_dssp SSCCCCEEEECSSCTTEEEEESSSS-CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred CCCCeeEEEeCCCCCcEEEEEcCCC-CEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence 2356778999987567777654434 7888888765444444322 455788999987765555544444 77
Q ss_pred EEEeCCCC-ceeEEEecCCCCccceeeeee--CCeEEEEeCCCCcEEEEcccCCCcceeee
Q psy6570 141 ESINLNGK-DRFVVYHTEDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKFGNSDFNVLA 198 (713)
Q Consensus 141 ~~~~~~g~-~~~~~~~~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~~~~~~ 198 (713)
...++... ........ ........+++. ++.++++-...+.|..++...+.....+.
T Consensus 243 ~~~d~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~ 302 (416)
T 2pm9_A 243 LIWDLRNANTPLQTLNQ-GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP 302 (416)
T ss_dssp CEEETTSTTSCSBCCCS-CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE
T ss_pred EEEeCCCCCCCcEEeec-CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec
Confidence 77777653 22111110 112234556653 44555555566777777765554444433
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.035 Score=61.39 Aligned_cols=191 Identities=15% Similarity=0.102 Sum_probs=112.8
Q ss_pred CCceeEEEccCccc-EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCC
Q psy6570 6 SGNVTRVKREMNLK-TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSG 84 (713)
Q Consensus 6 ~~~I~~~~~~~~~~-~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~ 84 (713)
++.|...+..+... .+...-..+.+|++.+.+..|.... ..+.|.+.+.+++....+... -....+|++.|.+.
T Consensus 365 dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----~d~~v~~~~~~~~~~~~~~~~-~~~v~~~~~s~d~~ 439 (577)
T 2ymu_A 365 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS----DDKTVKLWNRNGQLLQTLTGH-SSSVWGVAFSPDDQ 439 (577)
T ss_dssp TSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEE----TTSEEEEECTTCCEEEEEECC-SSCEEEEEECTTSS
T ss_pred CCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEe----CCCEEEEEeCCCCEEEEecCC-CCCeEEEEECCCCC
Confidence 34455555544322 2222344568899998766666544 367888999988776665533 35678899998665
Q ss_pred cEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccce
Q psy6570 85 RMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPY 164 (713)
Q Consensus 85 ~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~ 164 (713)
+|..+. ... .|...++++.....+.. .......|++++++..|..+. ..+.|...+.+|.....+... .....
T Consensus 440 ~l~~~~-~d~-~v~~w~~~~~~~~~~~~-~~~~v~~~~~spd~~~las~~-~d~~i~iw~~~~~~~~~~~~h---~~~v~ 512 (577)
T 2ymu_A 440 TIASAS-DDK-TVKLWNRNGQLLQTLTG-HSSSVRGVAFSPDGQTIASAS-DDKTVKLWNRNGQLLQTLTGH---SSSVR 512 (577)
T ss_dssp EEEEEE-TTS-EEEEEETTSCEEEEEEC-CSSCEEEEEECTTSCEEEEEE-TTSEEEEEETTSCEEEEEECC---SSCEE
T ss_pred EEEEEc-CCC-EEEEEECCCCEEEEEcC-CCCCEEEEEEcCCCCEEEEEe-CCCEEEEEcCCCCEEEEEeCC---CCCEE
Confidence 555443 333 67777888765555542 344568899998766665544 456788888888765555432 22334
Q ss_pred eeeee-CCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEE
Q psy6570 165 KLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLI 209 (713)
Q Consensus 165 ~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v 209 (713)
.|++. +++++++-...+.|+..+.. +.....+......+..+.+
T Consensus 513 ~l~~s~dg~~l~s~~~dg~v~lwd~~-~~~~~~~~~h~~~v~~~~f 557 (577)
T 2ymu_A 513 GVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAF 557 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEE
T ss_pred EEEEcCCCCEEEEEECcCEEEEEeCC-CCEEEEEcCCCCCEEEEEE
Confidence 55554 33344444455677777743 3334444433333444443
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.023 Score=58.63 Aligned_cols=176 Identities=9% Similarity=-0.030 Sum_probs=104.3
Q ss_pred CCceeEEEccCcccEE-ec-CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCce-EEEEEc-CCCCCcceEEEcC
Q psy6570 6 SGNVTRVKREMNLKTV-LS-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK-KRTLLN-TGLNEPYDIALEP 81 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~-~~-~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~-~~~l~~-~~~~~p~~iavD~ 81 (713)
++.|...++.....+. +. .......+++.+.+..++++-. ..+.|.+.++.... ...+.. .....+..+++.|
T Consensus 148 d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p 224 (344)
T 4gqb_B 148 DICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCS---EDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHP 224 (344)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEE---TTSCEEEEETTSSSCEEECC----CCCEEEEEECS
T ss_pred CCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeec---cccccccccccccceeeeeecceeeccceeeeecC
Confidence 4556666665433221 22 2344577888887777877766 56788888886433 333322 2234577899998
Q ss_pred CCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCc
Q psy6570 82 LSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGY 161 (713)
Q Consensus 82 ~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~ 161 (713)
.++.++++-.... .|...++........+.......+.|++.+.+.++..+-...+.|...++.......+.. ...
T Consensus 225 ~~~~~l~sg~~dg-~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~---H~~ 300 (344)
T 4gqb_B 225 QQSEVFVFGDENG-TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQA---HRD 300 (344)
T ss_dssp SCTTEEEEEETTS-EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECC---CSS
T ss_pred CCCcceEEeccCC-cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcC---CCC
Confidence 8888888755444 787777764433333333445568899998776666665566778888876554322211 122
Q ss_pred cceeeeee--CCeEEEEeCCCCcEEEEcc
Q psy6570 162 KPYKLEVF--EDNLYFSTYRTNNILKINK 188 (713)
Q Consensus 162 ~p~~i~~~--~~~ly~td~~~~~i~~~~~ 188 (713)
...+|++. +.+|+.+-...+.|+..+.
T Consensus 301 ~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 301 FVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp CEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred CEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 33455553 4567666555566655543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.045 Score=60.50 Aligned_cols=171 Identities=14% Similarity=0.066 Sum_probs=104.2
Q ss_pred CCceeEEEccCcccEEec-CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCC
Q psy6570 6 SGNVTRVKREMNLKTVLS-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSG 84 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~-~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~ 84 (713)
++.|...++.+.....+. ....+.++++.+.+..|.... ..+.|.+.+.+++....+... ...+.+|++.|...
T Consensus 324 d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----~dg~v~~~~~~~~~~~~~~~~-~~~v~~~~~s~dg~ 398 (577)
T 2ymu_A 324 DKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASAS----DDKTVKLWNRNGQLLQTLTGH-SSSVRGVAFSPDGQ 398 (577)
T ss_dssp TSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTCCEEEEEECC-SSCEEEEEECTTSS
T ss_pred CCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEe----CCCEEEEEcCCCCEEEEecCC-CCCeEEEEECCCCC
Confidence 445555565553322222 234457889988766665544 367888899988776665533 36688999998666
Q ss_pred cEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccce
Q psy6570 85 RMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPY 164 (713)
Q Consensus 85 ~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~ 164 (713)
+|..... .. .|...+.+++...++. ..-....+|++.+++.+|..+. ..+.|...+.++.....+... .....
T Consensus 399 ~l~~~~~-d~-~v~~~~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~-~d~~v~~w~~~~~~~~~~~~~---~~~v~ 471 (577)
T 2ymu_A 399 TIASASD-DK-TVKLWNRNGQLLQTLT-GHSSSVWGVAFSPDDQTIASAS-DDKTVKLWNRNGQLLQTLTGH---SSSVR 471 (577)
T ss_dssp CEEEEET-TS-EEEEECTTCCEEEEEE-CCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTSCEEEEEECC---SSCEE
T ss_pred EEEEEeC-CC-EEEEEeCCCCEEEEec-CCCCCeEEEEECCCCCEEEEEc-CCCEEEEEECCCCEEEEEcCC---CCCEE
Confidence 6655443 23 6777777776555543 2344567899998776666554 456788888877655554432 22334
Q ss_pred eeeee-CCeEEEEeCCCCcEEEEcc
Q psy6570 165 KLEVF-EDNLYFSTYRTNNILKINK 188 (713)
Q Consensus 165 ~i~~~-~~~ly~td~~~~~i~~~~~ 188 (713)
.+++. ++.++.+-...+.|+..+.
T Consensus 472 ~~~~spd~~~las~~~d~~i~iw~~ 496 (577)
T 2ymu_A 472 GVAFSPDGQTIASASDDKTVKLWNR 496 (577)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEET
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEcC
Confidence 55554 3444455445566666664
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=97.11 E-value=0.059 Score=55.42 Aligned_cols=188 Identities=11% Similarity=-0.039 Sum_probs=104.6
Q ss_pred cCCceeEEEccCcc----cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEE-EEE-cCCCCCcceEE
Q psy6570 5 SSGNVTRVKREMNL----KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKR-TLL-NTGLNEPYDIA 78 (713)
Q Consensus 5 ~~~~I~~~~~~~~~----~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~-~l~-~~~~~~p~~ia 78 (713)
.++.|...++.+.. ..+......+..|++.+.+..|+.+. ..+.|.+.++...... .+. ......+..|+
T Consensus 28 ~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 103 (372)
T 1k8k_C 28 NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG----TDRNAYVWTLKGRTWKPTLVILRINRAARCVR 103 (372)
T ss_dssp SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE----TTSCEEEEEEETTEEEEEEECCCCSSCEEEEE
T ss_pred CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEc----CCCeEEEEECCCCeeeeeEEeecCCCceeEEE
Confidence 45677777777642 12223344568899998766666544 3577888887655422 222 22235678899
Q ss_pred EcCCCCcEEEEccCCCCeEEEEecCCCCcE---EEE-eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC-------
Q psy6570 79 LEPLSGRMFWTELGIKPRISGASIDGKNKF---NLV-DNNIQWPTGITIDYPSQRLYWADPKARTIESINLNG------- 147 (713)
Q Consensus 79 vD~~~~~ly~td~~~~~~I~~~~~dG~~~~---~l~-~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g------- 147 (713)
+.+...+|+..... . .|...+++..... ..+ .........|++++.+..|+.+. ..+.|...++..
T Consensus 104 ~~~~~~~l~~~~~d-~-~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~ 180 (372)
T 1k8k_C 104 WAPNEKKFAVGSGS-R-VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS-CDFKCRIFSAYIKEVEERP 180 (372)
T ss_dssp ECTTSSEEEEEETT-S-SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE-TTSCEEEEECCCTTTSCCC
T ss_pred ECCCCCEEEEEeCC-C-EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc-CCCCEEEEEcccccccccc
Confidence 99876666665543 2 5666666554421 122 22244578899998666665554 456777777531
Q ss_pred ---------CceeEEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceeeec
Q psy6570 148 ---------KDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLAN 199 (713)
Q Consensus 148 ---------~~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~~ 199 (713)
.....+............+++. ++.++++....+.|..++...+.....+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (372)
T 1k8k_C 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS 242 (372)
T ss_dssp CCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred cccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence 1112222221112234555554 333445545667788887765555444443
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.11 Score=54.43 Aligned_cols=174 Identities=11% Similarity=-0.038 Sum_probs=101.0
Q ss_pred CCceeEEEccCcccEE-e-cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecC-CceEEEEEcCCCCCcceEEEcCC
Q psy6570 6 SGNVTRVKREMNLKTV-L-SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE-GRKKRTLLNTGLNEPYDIALEPL 82 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~-~-~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~-G~~~~~l~~~~~~~p~~iavD~~ 82 (713)
++.|...++.....+. + ........|+++ .+.| ++-. ..+.|.+.++. +......+......+.+|++.|.
T Consensus 155 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 228 (401)
T 4aez_A 155 NGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVL-SSGS---RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD 228 (401)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEE-EEEE---TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred CCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEE-EEEc---CCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCC
Confidence 5566666666533222 2 222334555553 3444 4444 57889999987 33333333333467889999985
Q ss_pred CCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcC--CCCcEEEEeCCCCceeEEEecCCCC
Q psy6570 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADP--KARTIESINLNGKDRFVVYHTEDNG 160 (713)
Q Consensus 83 ~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~--~~~~I~~~~~~g~~~~~~~~~~~~~ 160 (713)
...|+... ... .|...++........+.........|++.+.+..|+++-. ..+.|...++........... .
T Consensus 229 ~~~l~s~~-~d~-~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~---~ 303 (401)
T 4aez_A 229 GLQLASGG-NDN-VVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA---G 303 (401)
T ss_dssp SSEEEEEE-TTS-CEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC---S
T ss_pred CCEEEEEe-CCC-eEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC---C
Confidence 44444443 333 6888888765554444444556789999988888888754 678899999865544333332 2
Q ss_pred ccceeeeee--CCeEEEEe-CCCCcEEEEcccC
Q psy6570 161 YKPYKLEVF--EDNLYFST-YRTNNILKINKFG 190 (713)
Q Consensus 161 ~~p~~i~~~--~~~ly~td-~~~~~i~~~~~~~ 190 (713)
.....+++. +..|+.+. ...+.|..++...
T Consensus 304 ~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 304 SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp SCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred CcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 234455554 44454442 2456676666544
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.012 Score=60.98 Aligned_cols=158 Identities=12% Similarity=0.002 Sum_probs=94.8
Q ss_pred CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCC
Q psy6570 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKN 106 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~ 106 (713)
....|++.+.+..|+... ..+.|.+.++........+.........|++.+....++++..... .|...++....
T Consensus 141 ~V~~v~~spdg~~l~sgs----~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg-~v~~wd~~~~~ 215 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGG----KDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDG-RILLWDTRKPK 215 (357)
T ss_dssp CEEEEEECSSSSEEEEEE----TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTS-CEEECCTTSSS
T ss_pred CEEEEEECCCCCEEEEEe----CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCC-ceEEEECCCCc
Confidence 457888988766565443 4678989998765554444444466788999877666666654433 67776665433
Q ss_pred cEEEEe--CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeee--CCeEEEEeCCCCc
Q psy6570 107 KFNLVD--NNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF--EDNLYFSTYRTNN 182 (713)
Q Consensus 107 ~~~l~~--~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~--~~~ly~td~~~~~ 182 (713)
....+. .....+..|++.|.++.++.+-...+.|...++........+... ......|++. +.+++.+-...+.
T Consensus 216 ~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~~lasgs~D~~ 293 (357)
T 4g56_B 216 PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH--SQNITGLAYSYHSSPFLASISEDCT 293 (357)
T ss_dssp CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC--SSCEEEEEECSSSSCCEEEEETTSC
T ss_pred eeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc--ceeEEEEEEcCCCCCEEEEEeCCCE
Confidence 222221 123346789999887777776666778888887654333222221 1122445543 4455555555667
Q ss_pred EEEEcccCC
Q psy6570 183 ILKINKFGN 191 (713)
Q Consensus 183 i~~~~~~~~ 191 (713)
|+..+...+
T Consensus 294 i~iwd~~~~ 302 (357)
T 4g56_B 294 VAVLDADFS 302 (357)
T ss_dssp EEEECTTSC
T ss_pred EEEEECCCC
Confidence 777776544
|
| >1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00021 Score=49.39 Aligned_cols=35 Identities=46% Similarity=0.973 Sum_probs=28.4
Q ss_pred CCCC---CCCCCCcEEcCCC--CCeeccCCCCCCCCCCccc
Q psy6570 507 KCDT---CTCLNGGTCIPNS--KNNVCKCPSQYTGRRCECA 542 (713)
Q Consensus 507 ~C~~---~~C~~~g~C~~~~--~~~~C~C~~g~~G~~C~~~ 542 (713)
.|.+ .||.+ |+|.... +.|.|.|++||+|.+|+..
T Consensus 5 ~C~~~~~~pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce~~ 44 (46)
T 1k36_A 5 KCSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEHF 44 (46)
T ss_dssp CCCTTCCSSCSS-EEEEEETTTTEEEEEECTTCSSTTSCCC
T ss_pred cCCCCCCCCCCC-CEeeccCCCCCEEEECCCCCccCCCCcc
Confidence 4555 79998 8998643 5899999999999999853
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.024 Score=59.57 Aligned_cols=182 Identities=4% Similarity=-0.072 Sum_probs=105.7
Q ss_pred cCCceeEEEccCccc--EE--ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCC----ceEEEEEcCCCCCcce
Q psy6570 5 SSGNVTRVKREMNLK--TV--LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEG----RKKRTLLNTGLNEPYD 76 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~--~~--~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G----~~~~~l~~~~~~~p~~ 76 (713)
.++.|...++..... .+ ......+..|++.+.+..|+... ..+.|.+.+++. ......+.........
T Consensus 43 ~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~ 118 (416)
T 2pm9_A 43 TDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGAL----DNGSLELYSTNEANNAINSMARFSNHSSSVKT 118 (416)
T ss_dssp CCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEE----SSSCEEEECCSSTTSCCCEEEECCCSSSCCCE
T ss_pred CCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEc----cCCeEEEeecccccccccchhhccCCccceEE
Confidence 456788888776431 11 23344567889988766666554 357888888876 2222223233456789
Q ss_pred EEEcCCCCcEEEEccCCCCeEEEEecCCCC------cEEEE---eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC
Q psy6570 77 IALEPLSGRMFWTELGIKPRISGASIDGKN------KFNLV---DNNIQWPTGITIDYPSQRLYWADPKARTIESINLNG 147 (713)
Q Consensus 77 iavD~~~~~ly~td~~~~~~I~~~~~dG~~------~~~l~---~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g 147 (713)
|++.|.++.++++-.... .|...++.... ....+ .........|++++..+.++++-...+.|...++..
T Consensus 119 ~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 197 (416)
T 2pm9_A 119 VKFNAKQDNVLASGGNNG-EIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA 197 (416)
T ss_dssp EEECSSSTTBEEEECSSS-CEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT
T ss_pred EEEcCCCCCEEEEEcCCC-eEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC
Confidence 999987455555543333 67777776543 21111 122345688999987566777766678899988876
Q ss_pred CceeEEEecCCC----Cccceeeeee--CCeEEEEeCCCC---cEEEEcccCC
Q psy6570 148 KDRFVVYHTEDN----GYKPYKLEVF--EDNLYFSTYRTN---NILKINKFGN 191 (713)
Q Consensus 148 ~~~~~~~~~~~~----~~~p~~i~~~--~~~ly~td~~~~---~i~~~~~~~~ 191 (713)
............ ......+++. +..++++....+ .|..++....
T Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 198 KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 544333322110 1233455554 334555554444 6666665543
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.021 Score=57.94 Aligned_cols=162 Identities=14% Similarity=0.204 Sum_probs=95.6
Q ss_pred eeEEEccCcccE-EecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEE
Q psy6570 9 VTRVKREMNLKT-VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMF 87 (713)
Q Consensus 9 I~~~~~~~~~~~-~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly 87 (713)
|++++.++.... ..........++++ ++.||+... .+.|++++++|+...... ........+++|+ ++.||
T Consensus 80 l~~~d~~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~----~~~l~~~d~~g~~~~~~~-~~~~~~~~~~~~~-~g~l~ 151 (330)
T 3hxj_A 80 VYAINPDGTEKWRFDTKKAIVSDFTIF--EDILYVTSM----DGHLYAINTDGTEKWRFK-TKKAIYATPIVSE-DGTIY 151 (330)
T ss_dssp EEEECCCGGGGGGSCC-----CCEEEE--TTEEEEECT----TSEEEEECTTSCEEEEEE-CSSCCCSCCEECT-TSCEE
T ss_pred EEEECCCCcEEEEEECCCCcccCceEE--CCEEEEEec----CCEEEEEcCCCCEEEEEc-CCCceeeeeEEcC-CCEEE
Confidence 777776553311 11111112344554 678887654 578999998865543333 2223456678874 67788
Q ss_pred EEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeee
Q psy6570 88 WTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLE 167 (713)
Q Consensus 88 ~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~ 167 (713)
+.... . .|++++.+|+.+..+ .........+++| .+++||++. +.|++++.+|......... .....++.
T Consensus 152 vgt~~-~-~l~~~d~~g~~~~~~-~~~~~~~~~~~~d-~~g~l~v~t---~~l~~~d~~g~~~~~~~~~---~~~~~~~~ 221 (330)
T 3hxj_A 152 VGSND-N-YLYAINPDGTEKWRF-KTNDAITSAASIG-KDGTIYFGS---DKVYAINPDGTEKWNFYAG---YWTVTRPA 221 (330)
T ss_dssp EECTT-S-EEEEECTTSCEEEEE-ECSSCCCSCCEEC-TTCCEEEES---SSEEEECTTSCEEEEECCS---SCCCSCCE
T ss_pred EEcCC-C-EEEEECCCCCEeEEE-ecCCCceeeeEEc-CCCEEEEEe---CEEEEECCCCcEEEEEccC---CcceeceE
Confidence 86642 3 799998885443333 2233445678887 467898887 7899999666543332211 23345666
Q ss_pred eeC-CeEEEEeCCCCcEEEEccc
Q psy6570 168 VFE-DNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 168 ~~~-~~ly~td~~~~~i~~~~~~ 189 (713)
++. +.||++.. .+.|+++++.
T Consensus 222 ~~~~g~l~v~t~-~~gl~~~~~~ 243 (330)
T 3hxj_A 222 ISEDGTIYVTSL-DGHLYAINPD 243 (330)
T ss_dssp ECTTSCEEEEET-TTEEEEECTT
T ss_pred ECCCCeEEEEcC-CCeEEEECCC
Confidence 664 47877754 4678888653
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0091 Score=68.66 Aligned_cols=161 Identities=8% Similarity=-0.015 Sum_probs=93.0
Q ss_pred CceEEEeccCCeEEEeecCCC-----------------------------CCCeEEEEecCC-ceEEEEEcC--CCCCcc
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGR-----------------------------SSNNIMVSTLEG-RKKRTLLNT--GLNEPY 75 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~-----------------------------~~~~I~~~~~~G-~~~~~l~~~--~~~~p~ 75 (713)
+.++++.+.++.|+++..... ....|.+.++++ ...+.+... ....+.
T Consensus 211 ~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 290 (741)
T 2ecf_A 211 HTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLA 290 (741)
T ss_dssp CCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEE
T ss_pred ccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEE
Confidence 578999999888888753110 011677788776 554444322 123456
Q ss_pred eEEEcCCCCcEEEEcc--C-CCCeEEEEecCCCCcEEEEeCCCC----CCeeEEEeCCCCeEEEEcC-CCCcEEEEeCCC
Q psy6570 76 DIALEPLSGRMFWTEL--G-IKPRISGASIDGKNKFNLVDNNIQ----WPTGITIDYPSQRLYWADP-KARTIESINLNG 147 (713)
Q Consensus 76 ~iavD~~~~~ly~td~--~-~~~~I~~~~~dG~~~~~l~~~~~~----~p~glavd~~~~~LY~~d~-~~~~I~~~~~~g 147 (713)
.+++ |...+|+++.. . ....|++.++++...+.++..... ....+++.+++..||.++. +..+|+.++++|
T Consensus 291 ~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~ 369 (741)
T 2ecf_A 291 RVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG 369 (741)
T ss_dssp EEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS
T ss_pred EEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC
Confidence 7888 87788887643 1 224788888887666555532211 3357899987664444443 335799998887
Q ss_pred CceeEEEecCCCCccceeeeeeCCeEEEEeCCC----CcEEEEcccC
Q psy6570 148 KDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRT----NNILKINKFG 190 (713)
Q Consensus 148 ~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~~----~~i~~~~~~~ 190 (713)
. ...+.........+..++.+++.||++.... ..|+.++..+
T Consensus 370 ~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g 415 (741)
T 2ecf_A 370 K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQG 415 (741)
T ss_dssp C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTC
T ss_pred C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCC
Confidence 7 4443322111111123344466777765432 3467766433
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.095 Score=52.62 Aligned_cols=186 Identities=10% Similarity=0.002 Sum_probs=102.8
Q ss_pred CCceeEEEccCcccEE-ec-CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCC
Q psy6570 6 SGNVTRVKREMNLKTV-LS-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLS 83 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~-~~-~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~ 83 (713)
++.|...++.+...+. +. .-.....+++.+.++.|+.. . ..+.|.+.+++.......+.........|++.|..
T Consensus 34 dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-s---~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 109 (304)
T 2ynn_A 34 SGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVG-S---DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK 109 (304)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEE-E---TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS
T ss_pred CCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEE-C---CCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC
Confidence 4566666665533221 22 22334678888776666544 3 46889999987544433333334668899999865
Q ss_pred CcEEEEccCCCCeEEEEecCCCCc-EEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 84 GRMFWTELGIKPRISGASIDGKNK-FNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 84 ~~ly~td~~~~~~I~~~~~dG~~~-~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
.+|+ +-.... .|..-++..... ...+.........++++|.++.++++-...+.|...++............. ...
T Consensus 110 ~~l~-sgs~D~-~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~-~~~ 186 (304)
T 2ynn_A 110 PYVL-SGSDDL-TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ-ERG 186 (304)
T ss_dssp SEEE-EEETTS-CEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCC-TTC
T ss_pred CEEE-EECCCC-eEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCC-cCc
Confidence 5554 433333 677777664432 233333445568899998666666666667788888875443322222111 111
Q ss_pred ceeeeee---CCeEEEEeCCCCcEEEEcccCCCcceeee
Q psy6570 163 PYKLEVF---EDNLYFSTYRTNNILKINKFGNSDFNVLA 198 (713)
Q Consensus 163 p~~i~~~---~~~ly~td~~~~~i~~~~~~~~~~~~~~~ 198 (713)
...+++. ++.++++-...+.|...+...+.....+.
T Consensus 187 v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~ 225 (304)
T 2ynn_A 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225 (304)
T ss_dssp EEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC
Confidence 1223322 33455555566777777765544444333
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.15 Score=51.22 Aligned_cols=188 Identities=9% Similarity=-0.058 Sum_probs=105.9
Q ss_pred CCceeEEEccCcccE--EecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCc-eEEEEEcCCCCCcceEEEcCC
Q psy6570 6 SGNVTRVKREMNLKT--VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR-KKRTLLNTGLNEPYDIALEPL 82 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~--~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~-~~~~l~~~~~~~p~~iavD~~ 82 (713)
++.|...++.....+ +...-.....|++.+.+..|+ +-. ..+.|.+.++... .....+.........++++|.
T Consensus 76 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-sgs---~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~ 151 (304)
T 2ynn_A 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGS---DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151 (304)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEE-EEE---TTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTT
T ss_pred CCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEE-EEC---CCCeEEEEECCCCcchhhhhcccCCcEEEEEECCC
Confidence 456666666654322 222334467899988765554 444 4678888887654 333334333456788999987
Q ss_pred CCcEEEEccCCCCeEEEEecCCCCcE-EEEeCCCCCCeeEEEeCC-CCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCC
Q psy6570 83 SGRMFWTELGIKPRISGASIDGKNKF-NLVDNNIQWPTGITIDYP-SQRLYWADPKARTIESINLNGKDRFVVYHTEDNG 160 (713)
Q Consensus 83 ~~~ly~td~~~~~~I~~~~~dG~~~~-~l~~~~~~~p~glavd~~-~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 160 (713)
++.++.+-.... .|...++...... .+..........+++.+. ++.+.++-...+.|...++........+.. ..
T Consensus 152 ~~~~l~sgs~D~-~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~--h~ 228 (304)
T 2ynn_A 152 DPSTFASGCLDR-TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG--HM 228 (304)
T ss_dssp CTTEEEEEETTS-EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC--CS
T ss_pred CCCEEEEEeCCC-eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC--CC
Confidence 777777655444 7777777544333 333222233455666653 334445555667788888765433222222 11
Q ss_pred ccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceeeecc
Q psy6570 161 YKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLANN 200 (713)
Q Consensus 161 ~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~ 200 (713)
.....+++. .+.++++-...+.|...+.........+...
T Consensus 229 ~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~ 269 (304)
T 2ynn_A 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence 222344444 3445666666777887776655544444433
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.083 Score=55.39 Aligned_cols=183 Identities=9% Similarity=-0.022 Sum_probs=105.3
Q ss_pred ccCCceeEEEccCccc------EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCc--------eEEEEEcC
Q psy6570 4 ISSGNVTRVKREMNLK------TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR--------KKRTLLNT 69 (713)
Q Consensus 4 ~~~~~I~~~~~~~~~~------~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~--------~~~~l~~~ 69 (713)
..++.|..++++...+ ++......+..|++.+.++.++++-. ..+.|.+.++... ....+. .
T Consensus 54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s---~dg~v~vw~~~~~~~~~~~~~~~~~~~-~ 129 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGS---EDCTVMVWEIPDGGLVLPLREPVITLE-G 129 (402)
T ss_dssp SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEE---TTSEEEEEECCTTCCSSCBCSCSEEEE-C
T ss_pred cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEe---CCCeEEEEEccCCCCccccCCceEEec-C
Confidence 3467777777654211 11122344678888873455555555 5678888887654 223333 3
Q ss_pred CCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEE--eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC
Q psy6570 70 GLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLV--DNNIQWPTGITIDYPSQRLYWADPKARTIESINLNG 147 (713)
Q Consensus 70 ~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~--~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g 147 (713)
....+..|++.|....++++-.... .|...++........+ .........|++++.+..|+.+. ..+.|...++..
T Consensus 130 h~~~v~~~~~~p~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~ 207 (402)
T 2aq5_A 130 HTKRVGIVAWHPTAQNVLLSAGCDN-VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC-RDKRVRVIEPRK 207 (402)
T ss_dssp CSSCEEEEEECSSBTTEEEEEETTS-CEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE-TTSEEEEEETTT
T ss_pred CCCeEEEEEECcCCCCEEEEEcCCC-EEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe-cCCcEEEEeCCC
Confidence 3467889999987655666554434 6888887755443333 22344568899998666666554 557888888765
Q ss_pred CceeEEEecCCCCccceeeeee-CCeEEEEe---CCCCcEEEEcccCCC
Q psy6570 148 KDRFVVYHTEDNGYKPYKLEVF-EDNLYFST---YRTNNILKINKFGNS 192 (713)
Q Consensus 148 ~~~~~~~~~~~~~~~p~~i~~~-~~~ly~td---~~~~~i~~~~~~~~~ 192 (713)
...............+..+.+. ++.++.+. ...+.|..++.....
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 208 GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence 4433322111112224555554 44555554 456667777665433
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.062 Score=55.00 Aligned_cols=145 Identities=6% Similarity=0.004 Sum_probs=84.9
Q ss_pred cCCceeEEEccCccc-EEecCCCCCceEEEeccCCeEEEeecC-CCCCCeEEEEecCCce------------EEEEE-cC
Q psy6570 5 SSGNVTRVKREMNLK-TVLSNLHDPRGVAVDWVGKNLYWTDAG-GRSSNNIMVSTLEGRK------------KRTLL-NT 69 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~-~~~~~~~~p~gla~D~~~~~ly~td~~-~~~~~~I~~~~~~G~~------------~~~l~-~~ 69 (713)
.++.|...++..... ........+..+++.+.+..|+.+... ....+.|.+.++.... ...+. ..
T Consensus 94 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (369)
T 3zwl_B 94 ADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE 173 (369)
T ss_dssp TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred CCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence 355677777665432 224455567889998877666655431 0012667776654321 11111 11
Q ss_pred CCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCC-CCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCC
Q psy6570 70 GLNEPYDIALEPLSGRMFWTELGIKPRISGASIDG-KNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGK 148 (713)
Q Consensus 70 ~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG-~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~ 148 (713)
....+..+++++....|+..... . .|...++.. ......+.........|++++...+|+.+. ..+.|...++...
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~d-g-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 174 GLDAATVAGWSTKGKYIIAGHKD-G-KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS-RDTNSFLVDVSTL 250 (369)
T ss_dssp TCCCEEEEEECGGGCEEEEEETT-S-EEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTC
T ss_pred CccceeEEEEcCCCCEEEEEcCC-C-EEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec-CCceEEEEECCCC
Confidence 22367889999866666665432 3 788888876 333333344455678899998766666554 5567888888654
Q ss_pred ceeE
Q psy6570 149 DRFV 152 (713)
Q Consensus 149 ~~~~ 152 (713)
....
T Consensus 251 ~~~~ 254 (369)
T 3zwl_B 251 QVLK 254 (369)
T ss_dssp CEEE
T ss_pred ceee
Confidence 4433
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.014 Score=60.48 Aligned_cols=177 Identities=11% Similarity=0.024 Sum_probs=103.3
Q ss_pred CCceeEEEccCcccEE-ec-CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEc--CCCCCcceEEEcC
Q psy6570 6 SGNVTRVKREMNLKTV-LS-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLN--TGLNEPYDIALEP 81 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~-~~-~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~--~~~~~p~~iavD~ 81 (713)
++.|...++.....+. +. .......|++.+.++.++++-. ..+.|.+.++........+. .....+..|++.|
T Consensus 160 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~---~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp 236 (357)
T 4g56_B 160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG---EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHP 236 (357)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEE---TTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECT
T ss_pred CCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeec---cCCceEEEECCCCceeeeeeeccccccccchhhhh
Confidence 4455555555432221 22 2344677888777666666666 56778888775433221111 1224577899998
Q ss_pred CCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCc
Q psy6570 82 LSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGY 161 (713)
Q Consensus 82 ~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~ 161 (713)
.++.++.+-.... .|...++........+.........|++.+..+++..+-...+.|+..+++......+... ..
T Consensus 237 ~~~~~la~g~~d~-~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H---~~ 312 (357)
T 4g56_B 237 EKDDTFACGDETG-NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSH---RD 312 (357)
T ss_dssp TSTTEEEEEESSS-CEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCC---SS
T ss_pred cccceEEEeeccc-ceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCC---CC
Confidence 8787777654434 6777777654443333334445688999987766665555667788888765433222211 22
Q ss_pred cceeeeee--CCeEEEEeCCCCcEEEEccc
Q psy6570 162 KPYKLEVF--EDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 162 ~p~~i~~~--~~~ly~td~~~~~i~~~~~~ 189 (713)
...+|++. ++.++++-...+.|+..+..
T Consensus 313 ~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 313 FVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp CEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred CEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 34566653 45666666666777666643
|
| >1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0008 Score=53.78 Aligned_cols=68 Identities=29% Similarity=0.771 Sum_probs=52.5
Q ss_pred CCCCCCCCCCcEEee-cCCCceeeCCCCCcC--CCCCcCCCCCCC---CCCCCCCCeEecCCC----CcceeecCCCcc
Q psy6570 554 KCTPNYCSNNGTCVL-IEGKPSCKCLPPYSG--KQCTEREDSPSC---HNYCDNAGLCSYSKQ----GKPVCTCVNGWS 622 (713)
Q Consensus 554 ~C~~~~C~~~~~C~~-~~g~~~C~C~~G~~G--~~C~~~~~~~~C---~~~C~~~g~C~~~~~----g~~~C~C~~G~~ 622 (713)
.|....|+.++.|.. .+|..+|.|.+||.| ..|.... .+.| ...|+.+++|....+ +...|.|++||.
T Consensus 6 ~C~~~~C~~NA~C~r~~~g~e~C~C~~gy~gdg~~Cv~~~-~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~~ 83 (99)
T 1ob1_C 6 QCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENP-NPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDS 83 (99)
T ss_dssp CCCSCCCCTTEEEECCTTSCCEEEECTTEEEETTEEEECS-CCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECSTTC
T ss_pred EeccCCCCCCCCeEEcCCCCEEEEecCCeecCCCeEeeCC-CCChhhcCCCcCCCceeEecCCcccCCceEeEeCCCCc
Confidence 355556888999988 478999999999984 4676641 2567 356999999987765 578999999974
|
| >1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0005 Score=49.32 Aligned_cols=31 Identities=23% Similarity=0.505 Sum_probs=26.6
Q ss_pred ccCCCCC----------CCCCCCCeeeccCCCceeeeCCCCcc
Q psy6570 219 VTNHCDD----------KPCHQSALCINLPSSHTCLCPDHLTE 251 (713)
Q Consensus 219 ~~~~C~~----------~~C~~~~~C~~~~g~~~C~C~~G~~~ 251 (713)
.+|+|.. .+| .++|+|++|+|+|.|++||.+
T Consensus 3 DidEC~~~~~~~~~~~~~~C--~~~C~n~~Gsy~C~C~~Gy~~ 43 (53)
T 1apq_A 3 DLDECASRSKSGEEDPQPQC--QHLCHNYVGGYFCSCRPGYEL 43 (53)
T ss_dssp SCCTTTCSTTTCCCSSSCTT--SSEEEEETTEEEEECSTTCEE
T ss_pred ccccccCcccccccccCCCC--CCEeECCCCCeEEECCCCCeE
Confidence 4678875 578 579999999999999999985
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.12 Score=52.45 Aligned_cols=173 Identities=10% Similarity=0.023 Sum_probs=97.2
Q ss_pred CCceeEEEccCcccEE--ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCC
Q psy6570 6 SGNVTRVKREMNLKTV--LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLS 83 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~--~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~ 83 (713)
.+.|...++....... .........|++.+.+..|+... ..+.|.+.++........+.........|++.|..
T Consensus 143 dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~----~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~ 218 (321)
T 3ow8_A 143 VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGA----IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 218 (321)
T ss_dssp TSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTS
T ss_pred CCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEc----CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCC
Confidence 3455555555433221 22334467888988766665444 46789999987554433333333557899999855
Q ss_pred CcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccc
Q psy6570 84 GRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKP 163 (713)
Q Consensus 84 ~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p 163 (713)
.+|+... ... .|...++........+.........|++.+.+..|+.+ ...+.|...++........+.. .....
T Consensus 219 ~~l~s~s-~dg-~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~--h~~~v 293 (321)
T 3ow8_A 219 QLLVTAS-DDG-YIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSS-SSDKSVKVWDVGTRTCVHTFFD--HQDQV 293 (321)
T ss_dssp CEEEEEC-TTS-CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTEEEEEECC--CSSCE
T ss_pred CEEEEEc-CCC-eEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCEEEEEEcC--CCCcE
Confidence 5444443 333 67777877655544444445567889999876665544 4456787777754432222211 12233
Q ss_pred eeeeee-CCeEEEEeCCCCcEEEEc
Q psy6570 164 YKLEVF-EDNLYFSTYRTNNILKIN 187 (713)
Q Consensus 164 ~~i~~~-~~~ly~td~~~~~i~~~~ 187 (713)
.++++. ++.++++-...+.|...+
T Consensus 294 ~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 294 WGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp EEEEECTTSSEEEEEETTCCEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEe
Confidence 555554 334444444555555443
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0066 Score=65.62 Aligned_cols=108 Identities=16% Similarity=0.170 Sum_probs=74.5
Q ss_pred CCCCcceEEEcCCCCcEEEEccCC--------------------CCeEEEEecCCCCc-------EEEEe----------
Q psy6570 70 GLNEPYDIALEPLSGRMFWTELGI--------------------KPRISGASIDGKNK-------FNLVD---------- 112 (713)
Q Consensus 70 ~~~~p~~iavD~~~~~ly~td~~~--------------------~~~I~~~~~dG~~~-------~~l~~---------- 112 (713)
.+.+|.+|+++|.++.||++-.++ .++|++...++... ..++.
T Consensus 382 ~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~ 461 (592)
T 4a9v_A 382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT 461 (592)
T ss_dssp CEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred cccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccccc
Confidence 367899999999999999985431 26799998865321 22221
Q ss_pred -----------CCCCCCeeEEEeCCCCeEEE-EcCC-----------CCcEEEEeCCCCceeEEEecCCCCccceeeeee
Q psy6570 113 -----------NNIQWPTGITIDYPSQRLYW-ADPK-----------ARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF 169 (713)
Q Consensus 113 -----------~~~~~p~glavd~~~~~LY~-~d~~-----------~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~ 169 (713)
..|..|++|+||+ .+.||+ +|.. .+.|++++.+....+.++.... ...|.||.+.
T Consensus 462 ~~~g~~~~~~~~~fnsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~-~aEpnGiafS 539 (592)
T 4a9v_A 462 PKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI-GCEVTGISFS 539 (592)
T ss_dssp GGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT-TCEEEEEEEC
T ss_pred cccCccCccccCccCCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC-CccccCCEEC
Confidence 1378899999995 588999 8863 3479999886555655654322 3456777765
Q ss_pred --CCeEEEEeCC
Q psy6570 170 --EDNLYFSTYR 179 (713)
Q Consensus 170 --~~~ly~td~~ 179 (713)
+..||++-..
T Consensus 540 PD~ktLfV~vQH 551 (592)
T 4a9v_A 540 PDQKTLFVGIQH 551 (592)
T ss_dssp TTSSEEEEEEES
T ss_pred CCCCEEEEEEeC
Confidence 6689987533
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=96.95 E-value=0.25 Score=49.45 Aligned_cols=186 Identities=8% Similarity=-0.080 Sum_probs=102.6
Q ss_pred CCceeEEEccCccc--EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCC
Q psy6570 6 SGNVTRVKREMNLK--TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLS 83 (713)
Q Consensus 6 ~~~I~~~~~~~~~~--~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~ 83 (713)
++.|...++..... .+.........+++.+.+..|+... ..+.|.+.++........+.........|++++..
T Consensus 86 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (312)
T 4ery_A 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS----FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 161 (312)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE----TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe----CCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCC
Confidence 45566666554321 1222334456788887766665444 46789999987544433333333456789998755
Q ss_pred CcEEEEccCCCCeEEEEecCCCCcEE-EEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 84 GRMFWTELGIKPRISGASIDGKNKFN-LVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 84 ~~ly~td~~~~~~I~~~~~dG~~~~~-l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
..|+... ... .|...++....... +..........+++++.+..|+.+. ..+.|...++.................
T Consensus 162 ~~l~~~~-~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 238 (312)
T 4ery_A 162 SLIVSSS-YDG-LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSKGKCLKTYTGHKNEKY 238 (312)
T ss_dssp SEEEEEE-TTS-CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE-TTTEEEEEETTTTEEEEEECSSCCSSS
T ss_pred CEEEEEe-CCC-cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc-CCCeEEEEECCCCcEEEEEEecCCceE
Confidence 5454443 333 67777776544332 3222333456789998776666554 456788888765443332222111111
Q ss_pred cee--eeeeCCeEEEEeCCCCcEEEEcccCCCcceeee
Q psy6570 163 PYK--LEVFEDNLYFSTYRTNNILKINKFGNSDFNVLA 198 (713)
Q Consensus 163 p~~--i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~~ 198 (713)
... +...++.++++-...+.|+..+...+.....+.
T Consensus 239 ~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 276 (312)
T 4ery_A 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276 (312)
T ss_dssp CCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC
T ss_pred EEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh
Confidence 111 122345566666667778888766555444443
|
| >1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00019 Score=51.33 Aligned_cols=33 Identities=33% Similarity=0.807 Sum_probs=23.4
Q ss_pred CCCCCCCCcEec--cCCCCccccCCCCCcCCCCcc
Q psy6570 419 LNLKCQNGGVCV--NKTTGLECDCPKFYYGKNCQY 451 (713)
Q Consensus 419 ~~~~C~~~~~C~--~~~~~~~C~C~~G~~g~~C~~ 451 (713)
.+.||.++|+|+ +..++|.|.|++||+|..|+.
T Consensus 10 ~~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~ 44 (53)
T 1nql_B 10 HDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQY 44 (53)
T ss_dssp TCCEECTTCEEEEETTTTEEEEEECTTEESTTSCE
T ss_pred CCCCCCCCeEEeeecCCCCEEEecCCCCcCCCCCc
Confidence 345677777776 556667777777777777763
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.064 Score=56.18 Aligned_cols=178 Identities=10% Similarity=-0.033 Sum_probs=102.4
Q ss_pred CCceeEEEccCcccEEec-CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCC-----------
Q psy6570 6 SGNVTRVKREMNLKTVLS-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNE----------- 73 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~-~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~----------- 73 (713)
++.|...+..+.....+. ....+..|++.+.+..|+.+.. .+.|.+.++........+......
T Consensus 129 dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (425)
T 1r5m_A 129 NGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV----ENVTILWNVISGTVMQHFELKETGGSSINAENHSG 204 (425)
T ss_dssp TSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEET----TCCEEEEETTTTEEEEEECCC--------------
T ss_pred CCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEec----CCeEEEEECCCCcEEEEeeccccCccceeeccccC
Confidence 456666664443322222 3445678999887666765553 678888888655444333322222
Q ss_pred ----cceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCc
Q psy6570 74 ----PYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKD 149 (713)
Q Consensus 74 ----p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~ 149 (713)
+..+++.+. +.|+.... .. .|...++........+.........|++++.+..|+.+. ..+.|...++....
T Consensus 205 ~~~~~~~~~~~~~-~~~~~~~~-~g-~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~ 280 (425)
T 1r5m_A 205 DGSLGVDVEWVDD-DKFVIPGP-KG-AIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS-DDGTLRIWHGGNGN 280 (425)
T ss_dssp -CCCBSCCEEEET-TEEEEECG-GG-CEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE-TTSCEEEECSSSBS
T ss_pred CcceeeEEEEcCC-CEEEEEcC-CC-eEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc-CCCEEEEEECCCCc
Confidence 677888763 45444433 23 688888876555444444445568899998766666554 55678888876544
Q ss_pred eeEEEecCCCCccceeeeeeCCeEEEEeCCCCcEEEEcccCCCc
Q psy6570 150 RFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSD 193 (713)
Q Consensus 150 ~~~~~~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~ 193 (713)
....... .......+++..+.++++....+.|..++...+..
T Consensus 281 ~~~~~~~--~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 322 (425)
T 1r5m_A 281 SQNCFYG--HSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTL 322 (425)
T ss_dssp CSEEECC--CSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEE
T ss_pred cceEecC--CCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcE
Confidence 3333322 12234556655333555555667777777654433
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0049 Score=64.49 Aligned_cols=180 Identities=13% Similarity=0.125 Sum_probs=98.8
Q ss_pred CceeEEEccCcccEEecC-CCCC-ceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCC-Ccce--E----
Q psy6570 7 GNVTRVKREMNLKTVLSN-LHDP-RGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLN-EPYD--I---- 77 (713)
Q Consensus 7 ~~I~~~~~~~~~~~~~~~-~~~p-~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~-~p~~--i---- 77 (713)
..|+.+++.+.....+.. .... .++++.+.++.|+++.. ...|++.++++...+.+...... .|.+ |
T Consensus 60 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~----~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~ 135 (396)
T 3c5m_A 60 RNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKN----ELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSD 135 (396)
T ss_dssp CEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEET----TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTT
T ss_pred ceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEc----CCcEEEEECCCCCcEEEEecccccCCCCCEEEecc
Confidence 356666766544322222 2222 23778888888877765 34799999987666555542211 1221 1
Q ss_pred ------------EEcCCCCcEEEEcc---CCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeC-CCCeEEEEcC-CC---
Q psy6570 78 ------------ALEPLSGRMFWTEL---GIKPRISGASIDGKNKFNLVDNNIQWPTGITIDY-PSQRLYWADP-KA--- 137 (713)
Q Consensus 78 ------------avD~~~~~ly~td~---~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~-~~~~LY~~d~-~~--- 137 (713)
++.|..+.|++... .....|++.++++...+.+.. .......+++++ .+++|+++.. ..
T Consensus 136 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~ 214 (396)
T 3c5m_A 136 CTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ-DTAWLGHPIYRPFDDSTVGFCHEGPHDLV 214 (396)
T ss_dssp SSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE-ESSCEEEEEEETTEEEEEEEEECSCSSSC
T ss_pred CCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc-CCcccccceECCCCCCEEEEEecCCCCCC
Confidence 12333344444331 223378899988766655553 334567889988 5666766542 22
Q ss_pred -CcEEEEeCCCCceeEEEecCCCCccceeeee--eCCeEEEEeC--CCCc--EEEEcccCCC
Q psy6570 138 -RTIESINLNGKDRFVVYHTEDNGYKPYKLEV--FEDNLYFSTY--RTNN--ILKINKFGNS 192 (713)
Q Consensus 138 -~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~--~~~~ly~td~--~~~~--i~~~~~~~~~ 192 (713)
.+|+.+++++...+.+.... ....+..+++ ++.+|+++.. .... |+.++..++.
T Consensus 215 ~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (396)
T 3c5m_A 215 DARMWLVNEDGSNVRKIKEHA-EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE 275 (396)
T ss_dssp SCCCEEEETTSCCCEESSCCC-TTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC
T ss_pred CceEEEEECCCCceeEeeccC-CCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC
Confidence 57999999887655443311 0112333333 4556666532 2333 7777765543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.019 Score=65.94 Aligned_cols=120 Identities=10% Similarity=0.081 Sum_probs=85.0
Q ss_pred CCCCceEEEeccCCeEEEeecCCCCCC-----eEEEEecCCceEEEEEcCCCC------------------------Ccc
Q psy6570 25 LHDPRGVAVDWVGKNLYWTDAGGRSSN-----NIMVSTLEGRKKRTLLNTGLN------------------------EPY 75 (713)
Q Consensus 25 ~~~p~gla~D~~~~~ly~td~~~~~~~-----~I~~~~~~G~~~~~l~~~~~~------------------------~p~ 75 (713)
...+..+++.+.++.|+++.. ..+ .|.+.++++...+.++..... ...
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~---~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRG---KDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEEC---CSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEec---cCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 335788999998888887764 233 799999987665555532211 257
Q ss_pred eEEEcCCCCcEEEEccCCCCeEEEEecCCC---CcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeE
Q psy6570 76 DIALEPLSGRMFWTELGIKPRISGASIDGK---NKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFV 152 (713)
Q Consensus 76 ~iavD~~~~~ly~td~~~~~~I~~~~~dG~---~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~ 152 (713)
.+++.|..++|+++.. ..|++.++++. ..+.+.. ....+..++++|++++|+++.. +.|+.+++++.....
T Consensus 113 ~~~~SpDg~~l~~~~~---~~i~~~d~~~~~~~~~~~l~~-~~~~~~~~~~SPDG~~la~~~~--~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG---GELYLYDLKQEGKAAVRQLTH-GEGFATDAKLSPKGGFVSFIRG--RNLWVIDLASGRQMQ 186 (741)
T ss_dssp CCEECTTSSEEEEEET---TEEEEEESSSCSTTSCCBCCC-SSSCEEEEEECTTSSEEEEEET--TEEEEEETTTTEEEE
T ss_pred eeEECCCCCEEEEEeC---CcEEEEECCCCCcceEEEccc-CCcccccccCCCCCCEEEEEeC--CcEEEEecCCCCEEE
Confidence 8999998888888775 38999999876 4444432 2345788999999988887763 479999988765444
Q ss_pred E
Q psy6570 153 V 153 (713)
Q Consensus 153 ~ 153 (713)
+
T Consensus 187 ~ 187 (741)
T 2ecf_A 187 L 187 (741)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.065 Score=55.70 Aligned_cols=182 Identities=10% Similarity=0.044 Sum_probs=109.6
Q ss_pred cCCceeEEEccCcccEE-ec---CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCC--CCCcceEE
Q psy6570 5 SSGNVTRVKREMNLKTV-LS---NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG--LNEPYDIA 78 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~~~-~~---~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~--~~~p~~ia 78 (713)
.++.|...++.+..... .. ....+.+|++.+.++.++++-. ..+.|.+.++.+.....+.... ...+..|+
T Consensus 94 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 170 (383)
T 3ei3_B 94 KGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS---IRGATTLRDFSGSVIQVFAKTDSWDYWYCCVD 170 (383)
T ss_dssp BTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE---TTTEEEEEETTSCEEEEEECCCCSSCCEEEEE
T ss_pred CCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe---CCCEEEEEECCCCceEEEeccCCCCCCeEEEE
Confidence 35677777777543322 22 3344577888774445555545 5788999999987666555332 24578899
Q ss_pred EcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC----CceeEEE
Q psy6570 79 LEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNG----KDRFVVY 154 (713)
Q Consensus 79 vD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g----~~~~~~~ 154 (713)
+.|....|+... ... .|...++++.....+. ........|++++.+..++++-...+.|...++.. .......
T Consensus 171 ~~~~~~~l~~~~-~d~-~i~i~d~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 247 (383)
T 3ei3_B 171 VSVSRQMLATGD-STG-RLLLLGLDGHEIFKEK-LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM 247 (383)
T ss_dssp EETTTTEEEEEE-TTS-EEEEEETTSCEEEEEE-CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE
T ss_pred ECCCCCEEEEEC-CCC-CEEEEECCCCEEEEec-cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe
Confidence 998665555544 333 7888888766544443 34456789999987774666666677788888753 1111112
Q ss_pred ecCCCCccceeeeee--CCeEEEEeCCCCcEEEEcccCCCcce
Q psy6570 155 HTEDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKFGNSDFN 195 (713)
Q Consensus 155 ~~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~~~ 195 (713)
.. ......+++. .+.++++....+.|..++...+....
T Consensus 248 ~~---~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 287 (383)
T 3ei3_B 248 PH---EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD 287 (383)
T ss_dssp EC---SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred cC---CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence 21 2234555554 33444554556778877766554433
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0056 Score=68.28 Aligned_cols=116 Identities=12% Similarity=-0.033 Sum_probs=78.3
Q ss_pred ceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcE
Q psy6570 29 RGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKF 108 (713)
Q Consensus 29 ~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~ 108 (713)
..+++++.++.|+++.........|++.++++...+.+. ........+++.|.++.|+.++.....+|++.++++...+
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD-SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEEC-CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEee-cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 789999998888866541112256999998876666554 3334568899999877888665544347999999987766
Q ss_pred EEEeCCCCCCeeEE--------EeCCCCeEEEEcCCCCcEEEEeCCCC
Q psy6570 109 NLVDNNIQWPTGIT--------IDYPSQRLYWADPKARTIESINLNGK 148 (713)
Q Consensus 109 ~l~~~~~~~p~gla--------vd~~~~~LY~~d~~~~~I~~~~~~g~ 148 (713)
++......+.+++ +++++ +||++-...+++....+ |.
T Consensus 232 -~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~-g~ 276 (582)
T 3o4h_A 232 -DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID-GE 276 (582)
T ss_dssp -ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET-TE
T ss_pred -EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE-CC
Confidence 4433233344566 99877 77777655566666666 53
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=96.88 E-value=0.19 Score=50.39 Aligned_cols=177 Identities=6% Similarity=-0.066 Sum_probs=96.8
Q ss_pred CCceeEEEccCcc-c-EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCC
Q psy6570 6 SGNVTRVKREMNL-K-TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLS 83 (713)
Q Consensus 6 ~~~I~~~~~~~~~-~-~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~ 83 (713)
++.|...+..... . .+.........|++.+.++.|+... ..+.|.+.+++.......+.........+++.|..
T Consensus 44 dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 119 (312)
T 4ery_A 44 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS----DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 119 (312)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS
T ss_pred CCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEEC----CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence 4455555544322 1 1222333467888888765555443 46789999987554433343334567789999865
Q ss_pred CcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCce-eEEEecCCCCcc
Q psy6570 84 GRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDR-FVVYHTEDNGYK 162 (713)
Q Consensus 84 ~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~-~~~~~~~~~~~~ 162 (713)
..|+.... .. .|...++........+.........|++++....|+.+. ..+.|...++..... ..+.... ...
T Consensus 120 ~~l~s~~~-d~-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~--~~~ 194 (312)
T 4ery_A 120 NLIVSGSF-DE-SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS-YDGLCRIWDTASGQCLKTLIDDD--NPP 194 (312)
T ss_dssp SEEEEEET-TS-CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEEEECCSS--CCC
T ss_pred CEEEEEeC-CC-cEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeeEEeccC--CCc
Confidence 55554443 23 688888765544444433344567899997665555544 556788888754332 2222211 111
Q ss_pred ceeeeee-CCeEEEEeCCCCcEEEEcccCC
Q psy6570 163 PYKLEVF-EDNLYFSTYRTNNILKINKFGN 191 (713)
Q Consensus 163 p~~i~~~-~~~ly~td~~~~~i~~~~~~~~ 191 (713)
...+++. .+.++++....+.|..++...+
T Consensus 195 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 224 (312)
T 4ery_A 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKG 224 (312)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 2234443 2334444445566766665443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.058 Score=62.49 Aligned_cols=183 Identities=9% Similarity=-0.012 Sum_probs=109.0
Q ss_pred cCCceeEEEccCccc--EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCC
Q psy6570 5 SSGNVTRVKREMNLK--TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPL 82 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~--~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~ 82 (713)
.++.|...+..+... .+...-.....+++.+.+..|..+.. .+.|.+.+++.......+......+..|++.|.
T Consensus 33 ~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~ 108 (814)
T 3mkq_A 33 YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD----DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT 108 (814)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET----TSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred CCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCcEEEEEecCCCCEEEEEEeCC
Confidence 356677777655332 22223445688999988777776653 688999998654443333333467889999987
Q ss_pred CCcEEEEccCCCCeEEEEecCCC-CcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCc
Q psy6570 83 SGRMFWTELGIKPRISGASIDGK-NKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGY 161 (713)
Q Consensus 83 ~~~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~ 161 (713)
..+|+..... . .|...+++.. .....+.........+++++.++.++++-...+.|...++............. ..
T Consensus 109 ~~~l~~~~~d-g-~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~~ 185 (814)
T 3mkq_A 109 KPYVLSGSDD-L-TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ-ER 185 (814)
T ss_dssp SSEEEEEETT-S-EEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCC-TT
T ss_pred CCEEEEEcCC-C-EEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCC-CC
Confidence 6666655432 3 6777777765 33334444455678899997556566665566788888886544333332211 12
Q ss_pred cceeeeee---CCeEEEEeCCCCcEEEEcccCCCcc
Q psy6570 162 KPYKLEVF---EDNLYFSTYRTNNILKINKFGNSDF 194 (713)
Q Consensus 162 ~p~~i~~~---~~~ly~td~~~~~i~~~~~~~~~~~ 194 (713)
....+++. ++.++++-...+.|..++...+...
T Consensus 186 ~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 221 (814)
T 3mkq_A 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV 221 (814)
T ss_dssp CCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE
T ss_pred CEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE
Confidence 23334442 3445555555667777765544333
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.22 Score=51.20 Aligned_cols=176 Identities=11% Similarity=0.086 Sum_probs=98.8
Q ss_pred CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCC-CCcEEEEccCCCCeEEEEecCCC
Q psy6570 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPL-SGRMFWTELGIKPRISGASIDGK 105 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~-~~~ly~td~~~~~~I~~~~~dG~ 105 (713)
....+++.+.+..|+ +-. ..+.|.+.++........+.........+++.|. .+.++++-.... .|...++...
T Consensus 156 ~v~~~~~~~~~~~l~-t~s---~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg-~v~~wd~~~~ 230 (354)
T 2pbi_B 156 YLSACSFTNSDMQIL-TAS---GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDK-KAMVWDMRSG 230 (354)
T ss_dssp CEEEEEECSSSSEEE-EEE---TTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTS-CEEEEETTTC
T ss_pred cEEEEEEeCCCCEEE-EEe---CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCC-eEEEEECCCC
Confidence 346677776655555 444 4678888887654433333332345667788764 345666554433 6888887655
Q ss_pred CcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeee-CCeEEEEeCCCCcEE
Q psy6570 106 NKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNIL 184 (713)
Q Consensus 106 ~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~ 184 (713)
.....+.......+.|+++|....|+.+ ...+.|...++.......+............+++. .+.++.+....+.|.
T Consensus 231 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~-s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~ 309 (354)
T 2pbi_B 231 QCVQAFETHESDVNSVRYYPSGDAFASG-SDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTIN 309 (354)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cEEEEecCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEE
Confidence 4444444344567889999766555544 45677888887654433333322112223445544 345555555667788
Q ss_pred EEcccCCCcceeeeccccccccEE
Q psy6570 185 KINKFGNSDFNVLANNLNRASDVL 208 (713)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~ 208 (713)
.++...+.....+......+..+.
T Consensus 310 vwd~~~~~~~~~l~~h~~~v~~l~ 333 (354)
T 2pbi_B 310 VWDVLKGSRVSILFGHENRVSTLR 333 (354)
T ss_dssp EEETTTCSEEEEECCCSSCEEEEE
T ss_pred EEECCCCceEEEEECCCCcEEEEE
Confidence 887655555444443333333333
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.19 Score=51.23 Aligned_cols=183 Identities=7% Similarity=0.005 Sum_probs=102.9
Q ss_pred cCCceeEEEccCcccE-Eec-CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCC
Q psy6570 5 SSGNVTRVKREMNLKT-VLS-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPL 82 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~~-~~~-~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~ 82 (713)
.++.|...++.....+ .+. .......|++.+.+..|+.+. ..+.|.+.+++.......+. ....+..|++.|.
T Consensus 52 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~ 126 (369)
T 3zwl_B 52 KDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGS----ADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPC 126 (369)
T ss_dssp SSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE----TTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTT
T ss_pred CCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEe----CCCeEEEEECCCCcEEEEee-cCCCeEEEEEccC
Confidence 3566777776653322 122 344567889988666665444 46789999987655444443 3367889999987
Q ss_pred CCcEEEEccC---CCCeEEEEecCCCC------------cEEEEe-CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCC
Q psy6570 83 SGRMFWTELG---IKPRISGASIDGKN------------KFNLVD-NNIQWPTGITIDYPSQRLYWADPKARTIESINLN 146 (713)
Q Consensus 83 ~~~ly~td~~---~~~~I~~~~~dG~~------------~~~l~~-~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~ 146 (713)
...|+.+... ..+.|...+++... ...+.. ........+++++....|+.+. ..+.|..+++.
T Consensus 127 ~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~ 205 (369)
T 3zwl_B 127 GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH-KDGKISKYDVS 205 (369)
T ss_dssp SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEE-TTSEEEEEETT
T ss_pred CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEc-CCCEEEEEECC
Confidence 6666665432 01256655554322 111111 1122678899998777776655 45788888887
Q ss_pred CC-ceeEEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcce
Q psy6570 147 GK-DRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFN 195 (713)
Q Consensus 147 g~-~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~ 195 (713)
.. ........ .......+++. ++.++++....+.|..++...+....
T Consensus 206 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 206 NNYEYVDSIDL--HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254 (369)
T ss_dssp TTTEEEEEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCcEeEEEEec--CCCceeEEEECCCCCEEEEecCCceEEEEECCCCceee
Confidence 52 22222222 12234455554 33444444556677777765544433
|
| >1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00032 Score=50.09 Aligned_cols=32 Identities=31% Similarity=0.845 Sum_probs=25.6
Q ss_pred CCCCCCCcEEe--ecCCCceeeCCCCCcCCCCCc
Q psy6570 557 PNYCSNNGTCV--LIEGKPSCKCLPPYSGKQCTE 588 (713)
Q Consensus 557 ~~~C~~~~~C~--~~~g~~~C~C~~G~~G~~C~~ 588 (713)
+++|.++|+|. +..++|.|.|++||+|..|+.
T Consensus 11 ~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~ 44 (53)
T 1nql_B 11 DGYCLHDGVCMYIEALDKYACNCVVGYIGERCQY 44 (53)
T ss_dssp CCEECTTCEEEEETTTTEEEEEECTTEESTTSCE
T ss_pred CCCCCCCeEEeeecCCCCEEEecCCCCcCCCCCc
Confidence 45788888997 456678899999999988875
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.22 Score=52.48 Aligned_cols=195 Identities=6% Similarity=-0.052 Sum_probs=106.4
Q ss_pred CCceeEEEccCcccE--EecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCC
Q psy6570 6 SGNVTRVKREMNLKT--VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLS 83 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~--~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~ 83 (713)
++.|...++.+...+ +.........|++.+.++.|+ +-. ..+.|.+.++........+.........+++.+ +
T Consensus 171 D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~-s~s---~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~ 245 (410)
T 1vyh_C 171 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV-SAS---RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-D 245 (410)
T ss_dssp TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEE-EEE---TTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-T
T ss_pred CCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEE-EEe---CCCeEEEEECCCCcEEEEEeCCCccEEEEEECC-C
Confidence 445555555443211 111233467788887655554 444 467899998865443333333335567788886 4
Q ss_pred CcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCC-------------------CeEEEEcCCCCcEEEEe
Q psy6570 84 GRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPS-------------------QRLYWADPKARTIESIN 144 (713)
Q Consensus 84 ~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~-------------------~~LY~~d~~~~~I~~~~ 144 (713)
+.++++-.... .|...++........+.........|++.+.. +.++++-...+.|...+
T Consensus 246 g~~l~s~s~D~-~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd 324 (410)
T 1vyh_C 246 GTLIASCSNDQ-TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324 (410)
T ss_dssp SSEEEEEETTS-CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEE
T ss_pred CCEEEEEcCCC-eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEE
Confidence 55555544433 67777776554444443344455677777642 34555656667788888
Q ss_pred CCCCceeEEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEE
Q psy6570 145 LNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVL 208 (713)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~ 208 (713)
+........+.. ......++++. .+.++++....+.|...+...+.....+......+..+.
T Consensus 325 ~~~~~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~ 387 (410)
T 1vyh_C 325 VSTGMCLMTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD 387 (410)
T ss_dssp TTTTEEEEEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEE
T ss_pred CCCCceEEEEEC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEE
Confidence 764433222222 12233456654 334445555667788887765555555544333334443
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.032 Score=58.56 Aligned_cols=152 Identities=7% Similarity=-0.068 Sum_probs=90.1
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCc
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNK 107 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~ 107 (713)
+..+++.+. +.++.. . ..+.|.+.++........+.........|++.|....|+.+. ... .|...++.....
T Consensus 209 ~~~~~~~~~-~~~~~~-~---~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~-~i~i~d~~~~~~ 281 (425)
T 1r5m_A 209 GVDVEWVDD-DKFVIP-G---PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS-DDG-TLRIWHGGNGNS 281 (425)
T ss_dssp BSCCEEEET-TEEEEE-C---GGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE-TTS-CEEEECSSSBSC
T ss_pred eeEEEEcCC-CEEEEE-c---CCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc-CCC-EEEEEECCCCcc
Confidence 566777654 444444 3 467888988876544333433345678899998665555544 323 678777765544
Q ss_pred EEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEE
Q psy6570 108 FNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKI 186 (713)
Q Consensus 108 ~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~ 186 (713)
...+.........|++++.. ++++-...+.|...++............ ......+++. .+.++++....+.|..+
T Consensus 282 ~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 357 (425)
T 1r5m_A 282 QNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVD--GVPIFAGRISQDGQKYAVAFMDGQVNVY 357 (425)
T ss_dssp SEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEEECT--TCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEecccC--CccEEEEEEcCCCCEEEEEECCCeEEEE
Confidence 44444344567889999765 5555556678988888654433333221 2234455554 33444554556677777
Q ss_pred cccC
Q psy6570 187 NKFG 190 (713)
Q Consensus 187 ~~~~ 190 (713)
+...
T Consensus 358 ~~~~ 361 (425)
T 1r5m_A 358 DLKK 361 (425)
T ss_dssp ECHH
T ss_pred ECCC
Confidence 6543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.097 Score=55.92 Aligned_cols=165 Identities=11% Similarity=-0.009 Sum_probs=95.1
Q ss_pred CCceeEEEccCccc------EEecCCCCCceEEEecc---CCeEEEeecCCCCCCeEEEEecCCce-EEEEEcCCCCCcc
Q psy6570 6 SGNVTRVKREMNLK------TVLSNLHDPRGVAVDWV---GKNLYWTDAGGRSSNNIMVSTLEGRK-KRTLLNTGLNEPY 75 (713)
Q Consensus 6 ~~~I~~~~~~~~~~------~~~~~~~~p~gla~D~~---~~~ly~td~~~~~~~~I~~~~~~G~~-~~~l~~~~~~~p~ 75 (713)
.+.|+.+++..... .+......+..|++.+. +..|+.+. ..+.|.+.++.... ...+.......+.
T Consensus 170 ~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~----~d~~i~vwd~~~~~~~~~~~~~h~~~v~ 245 (450)
T 2vdu_B 170 FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD----RDEHIKISHYPQCFIVDKWLFGHKHFVS 245 (450)
T ss_dssp TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEE----TTSCEEEEEESCTTCEEEECCCCSSCEE
T ss_pred CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEc----CCCcEEEEECCCCceeeeeecCCCCceE
Confidence 45566666543221 12223345678889876 44454444 46788888876443 4343323345678
Q ss_pred eEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeC-------------------------CCCCCeeEEEeCCCCeE
Q psy6570 76 DIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDN-------------------------NIQWPTGITIDYPSQRL 130 (713)
Q Consensus 76 ~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~-------------------------~~~~p~glavd~~~~~L 130 (713)
.|++. ++.++++-.... .|...++........+.. .-.....|++.+.+..|
T Consensus 246 ~~~~s--d~~~l~s~~~d~-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 322 (450)
T 2vdu_B 246 SICCG--KDYLLLSAGGDD-KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV 322 (450)
T ss_dssp EEEEC--STTEEEEEESSS-EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred EEEEC--CCCEEEEEeCCC-eEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence 89998 454444443434 788888765443333321 11235688999888889
Q ss_pred EEEcCCCCcEEEEeC--C-CCceeEEEecCCCCccceeeeeeCCeEEEEeC
Q psy6570 131 YWADPKARTIESINL--N-GKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTY 178 (713)
Q Consensus 131 Y~~d~~~~~I~~~~~--~-g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~ 178 (713)
|++....+.|..+++ . +.....+..... ...+..+++..+.++++-.
T Consensus 323 ~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~-~~~v~~~~~~~~~~~v~~~ 372 (450)
T 2vdu_B 323 AFFVEATKCIIILEMSEKQKGDLALKQIITF-PYNVISLSAHNDEFQVTLD 372 (450)
T ss_dssp EEEETTCSEEEEEEECSSSTTCEEEEEEEEC-SSCEEEEEEETTEEEEEEC
T ss_pred EEEECCCCeEEEEEeccCCCCceeeccEecc-CCceEEEEecCCcEEEEEe
Confidence 888766777777777 2 222222222211 2456788887777777643
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.12 Score=58.91 Aligned_cols=183 Identities=11% Similarity=0.052 Sum_probs=107.2
Q ss_pred CceeEEEccCc-ccEEec--CCC-----CCceEEEeccCCeEEEeec-CCCCCCeEEEEecCCceEEEEEcCCCCCcceE
Q psy6570 7 GNVTRVKREMN-LKTVLS--NLH-----DPRGVAVDWVGKNLYWTDA-GGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDI 77 (713)
Q Consensus 7 ~~I~~~~~~~~-~~~~~~--~~~-----~p~gla~D~~~~~ly~td~-~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~i 77 (713)
..|++++..+. .++++. .+. ...++++.+.++.|.++-. +......|.+.++++.....+.... ....++
T Consensus 98 ~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~ 176 (710)
T 2xdw_A 98 RVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCM 176 (710)
T ss_dssp CEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCE
T ss_pred EEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceE
Confidence 35677765543 333322 111 2457888888887766543 1111128999999876654332222 225678
Q ss_pred EEcCCCCcEEEEccC-C-------------CCeEEEEecCCCCcE-EEEeCC---CCCCeeEEEeCCCCeEEEEcC-C--
Q psy6570 78 ALEPLSGRMFWTELG-I-------------KPRISGASIDGKNKF-NLVDNN---IQWPTGITIDYPSQRLYWADP-K-- 136 (713)
Q Consensus 78 avD~~~~~ly~td~~-~-------------~~~I~~~~~dG~~~~-~l~~~~---~~~p~glavd~~~~~LY~~d~-~-- 136 (713)
+..|.++.||++... . ..+|++.++.+.... +++... -....++++++++++|+++-. .
T Consensus 177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 256 (710)
T 2xdw_A 177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD 256 (710)
T ss_dssp EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS
T ss_pred EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC
Confidence 998877788887532 1 225888888754422 333222 223468999999998888753 2
Q ss_pred -CCcEEEEeCCC------C--ceeEEEecCCCCccceeeeeeCCeEEEEeCC---CCcEEEEcccCCC
Q psy6570 137 -ARTIESINLNG------K--DRFVVYHTEDNGYKPYKLEVFEDNLYFSTYR---TNNILKINKFGNS 192 (713)
Q Consensus 137 -~~~I~~~~~~g------~--~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~---~~~i~~~~~~~~~ 192 (713)
...|+.+++++ . ..+.+...... ....+..++++||+.... ..+|++++..++.
T Consensus 257 ~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~--~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 257 PVNRLWYCDLQQESNGITGILKWVKLIDNFEG--EYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp SCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS--CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred CccEEEEEECcccccccCCccceEEeeCCCCc--EEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 56899999875 3 24444432211 122355667888877543 3468888866543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.044 Score=62.61 Aligned_cols=127 Identities=11% Similarity=0.031 Sum_probs=83.4
Q ss_pred cCCceeEEEccCcc-cEEecCCC----CCceEEEeccCCeEEEeecCCC-----CCCeEEEEecCCceEEEEEcCC--CC
Q psy6570 5 SSGNVTRVKREMNL-KTVLSNLH----DPRGVAVDWVGKNLYWTDAGGR-----SSNNIMVSTLEGRKKRTLLNTG--LN 72 (713)
Q Consensus 5 ~~~~I~~~~~~~~~-~~~~~~~~----~p~gla~D~~~~~ly~td~~~~-----~~~~I~~~~~~G~~~~~l~~~~--~~ 72 (713)
.++.|..+++.+.. +.++.... .+..+++.+.++.|.++..... ....|++.++++...+.+.... ..
T Consensus 35 ~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 114 (723)
T 1xfd_A 35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNA 114 (723)
T ss_dssp SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccc
Confidence 45678888877644 33333222 3789999998887776643111 1267889998876654443222 12
Q ss_pred CcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCC------------------CCCeeEEEeCCCCeEEEEc
Q psy6570 73 EPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNI------------------QWPTGITIDYPSQRLYWAD 134 (713)
Q Consensus 73 ~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~------------------~~p~glavd~~~~~LY~~d 134 (713)
.+..+++.|..++|.++.. . .|++.++++...+.+..... ....+++++|++++|+++.
T Consensus 115 ~~~~~~~SPdG~~la~~~~--~-~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~ 191 (723)
T 1xfd_A 115 KLQYAGWGPKGQQLIFIFE--N-NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA 191 (723)
T ss_dssp CCSBCCBCSSTTCEEEEET--T-EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred cccccEECCCCCEEEEEEC--C-eEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence 3678899988878877664 3 79999998876666654321 1236899999988888764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=96.69 E-value=0.087 Score=54.80 Aligned_cols=186 Identities=10% Similarity=-0.026 Sum_probs=103.3
Q ss_pred cCCceeEEEccCccc------EEecCC------CCCceEEEe----ccCCe-EEEeecCCCCCCeEEEEecCC-------
Q psy6570 5 SSGNVTRVKREMNLK------TVLSNL------HDPRGVAVD----WVGKN-LYWTDAGGRSSNNIMVSTLEG------- 60 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~------~~~~~~------~~p~gla~D----~~~~~-ly~td~~~~~~~~I~~~~~~G------- 60 (713)
.++.|...++.+... ..+... ..+..|++. +.+.. |+.+.. .+.|.+.++..
T Consensus 89 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 89 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV----KGTTYIWKFHPFADESNS 164 (397)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET----TSCEEEEEEESSSSHHHH
T ss_pred CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC----CCcEEEEeCCcccccccc
Confidence 356677777665432 223333 567889998 77776 555543 57787777664
Q ss_pred ceEE-----EEE------cCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeC---C---CCCCeeEEE
Q psy6570 61 RKKR-----TLL------NTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDN---N---IQWPTGITI 123 (713)
Q Consensus 61 ~~~~-----~l~------~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~---~---~~~p~glav 123 (713)
+... .+. ......+..|++.|.. ++++..... .|...++........+.. . ......|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~ 241 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNG-TVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 241 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTS-EEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCC-cEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence 2222 232 2224568899999855 444443333 788888875444444443 2 456789999
Q ss_pred eCCCCeEEEEcCC--CCcEEEEeCCCCceeEEEecCC-----------CCccceeeeee-CCeEEEEeCCCCcEEEEccc
Q psy6570 124 DYPSQRLYWADPK--ARTIESINLNGKDRFVVYHTED-----------NGYKPYKLEVF-EDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 124 d~~~~~LY~~d~~--~~~I~~~~~~g~~~~~~~~~~~-----------~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~ 189 (713)
++....|+.+... .+.|...++........+.... .......+++. ++.++++....+.|..++..
T Consensus 242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 242 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 9877666665432 1678888875443322222100 11233455554 34445555566777777765
Q ss_pred CCCcceee
Q psy6570 190 GNSDFNVL 197 (713)
Q Consensus 190 ~~~~~~~~ 197 (713)
.+.....+
T Consensus 322 ~~~~~~~~ 329 (397)
T 1sq9_A 322 TKERITTL 329 (397)
T ss_dssp TTEEEEEE
T ss_pred CCceeEEE
Confidence 55444433
|
| >2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0016 Score=67.57 Aligned_cols=34 Identities=32% Similarity=1.093 Sum_probs=21.9
Q ss_pred eecCCCCccCCCCCCccccCCCCCCcccCCCCccCC-----------CCCCCCCCCCc
Q psy6570 471 KCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGK-----------KCDTCTCLNGG 517 (713)
Q Consensus 471 ~C~C~~G~~g~~C~~~~C~~~~~~~~C~C~~G~~g~-----------~C~~~~C~~~g 517 (713)
+|.|..++.|..|+. |.+||.|. .|..+.|.+++
T Consensus 287 ~C~C~hnT~G~~CEr-------------C~pGy~g~p~~~at~~~~~~C~pC~Cnghs 331 (403)
T 2y38_A 287 QCACQHNTCGGSCDR-------------CCPGFNQQPWKPATTDSANECQSCNCHGHA 331 (403)
T ss_dssp EECCCTTEESSSCCE-------------ECTTCCSSCCCCCCSSCCCCCCCCCCTTSC
T ss_pred EeECcCcCcCCCCCC-------------CCccccCCcccccccCCCccccccccCCCC
Confidence 466677777777664 66677654 57777776544
|
| >1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0023 Score=51.45 Aligned_cols=73 Identities=25% Similarity=0.667 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCcEEee-cCCCceeeCCCCCc--CCCCCcCCCCCC-C---CCCCCCCCeEecCCCCcceeecCCCcc---
Q psy6570 553 NKCTPNYCSNNGTCVL-IEGKPSCKCLPPYS--GKQCTEREDSPS-C---HNYCDNAGLCSYSKQGKPVCTCVNGWS--- 622 (713)
Q Consensus 553 ~~C~~~~C~~~~~C~~-~~g~~~C~C~~G~~--G~~C~~~~~~~~-C---~~~C~~~g~C~~~~~g~~~C~C~~G~~--- 622 (713)
..|....|+.++.|.. .+|..+|.|..||. |..|... +. | ...|+.++.|....+..-.|.|+++|.
T Consensus 11 h~C~~t~Cp~NA~C~r~~~G~e~CrCl~gY~~dg~~Cv~~---Np~C~~nNGGCd~nAeC~~~~~~ki~C~C~~~~~~~~ 87 (105)
T 1n1i_A 11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPA---SITCEENNGGCAPEAECTMDDKKEVECKCTKEGSEPL 87 (105)
T ss_dssp TSCCSSCCCTTEEEEECTTSCEEEEECTTEEECSSSEEEC---CCCTTSGGGGSCTTSEEEECTTSCEEEECCSTTCCEE
T ss_pred cEecCCCCCCCCCeEECCCCCEeEEEECCeeccCCEEEEC---CcchhhcCCCcCCCcEeEECCCCEEEeECCCCCCccc
Confidence 3455556888999998 68889999999998 4567765 44 6 456999999988766778999999964
Q ss_pred --cCCCCc
Q psy6570 623 --GITCSE 628 (713)
Q Consensus 623 --G~~C~~ 628 (713)
|-.|..
T Consensus 88 ~~GvfC~~ 95 (105)
T 1n1i_A 88 FEGVFCSS 95 (105)
T ss_dssp GGGTEECC
T ss_pred cceEEECC
Confidence 555543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.15 Score=59.08 Aligned_cols=184 Identities=8% Similarity=-0.076 Sum_probs=107.4
Q ss_pred CCceeEEEccCcccE--EecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCc-eEEEEEcCCCCCcceEEEcCC
Q psy6570 6 SGNVTRVKREMNLKT--VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR-KKRTLLNTGLNEPYDIALEPL 82 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~--~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~-~~~~l~~~~~~~p~~iavD~~ 82 (713)
++.|...+..+...+ +......+..|++.+.+..|+.+. ..+.|.+.+++.. .....+......+..+++.|.
T Consensus 76 dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~ 151 (814)
T 3mkq_A 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS----DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151 (814)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE----TTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT
T ss_pred CCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEc----CCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC
Confidence 566777776654322 233445578899988777776554 3678889888764 333333333456788999985
Q ss_pred CCcEEEEccCCCCeEEEEecCCCCcEEEEeCC-CCCCeeEEEeC--CCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCC
Q psy6570 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDNN-IQWPTGITIDY--PSQRLYWADPKARTIESINLNGKDRFVVYHTEDN 159 (713)
Q Consensus 83 ~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~-~~~p~glavd~--~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 159 (713)
++.++++-.... .|...+++.......+... ......+++.+ ....|+ +-...+.|...++........... .
T Consensus 152 ~~~~l~~~~~dg-~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~--~ 227 (814)
T 3mkq_A 152 DPSTFASGCLDR-TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-TASDDLTIKIWDYQTKSCVATLEG--H 227 (814)
T ss_dssp EEEEEEEEETTS-EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEE-EECTTSEEEEEETTTTEEEEEEEC--C
T ss_pred CCCEEEEEeCCC-eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEE-EEeCCCEEEEEECCCCcEEEEEcC--C
Confidence 565555554444 7888888655444433333 35677889987 444444 444567888888765443332222 1
Q ss_pred Cccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceee
Q psy6570 160 GYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVL 197 (713)
Q Consensus 160 ~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~ 197 (713)
......+++. .+.++++....+.|..++...+.....+
T Consensus 228 ~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 266 (814)
T 3mkq_A 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266 (814)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 2233445544 3344555455667777776554443333
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.025 Score=64.69 Aligned_cols=164 Identities=9% Similarity=0.021 Sum_probs=89.7
Q ss_pred CceEEEeccCCeEEEeecCCC------------------------------CCCeEEEEecCCceE-EEEEcCC-----C
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGR------------------------------SSNNIMVSTLEGRKK-RTLLNTG-----L 71 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~------------------------------~~~~I~~~~~~G~~~-~~l~~~~-----~ 71 (713)
+.++++.+.++.|+++..... ....|.+.++++... +.+.... .
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 367999988888877643110 012577777766543 3222110 1
Q ss_pred CCcceEEEcCCCCcEEEE-ccC-CCCeEEEEecCCCCcEEEEeC-CCCC----CeeEEEeCCCCeEEEE-cCCC------
Q psy6570 72 NEPYDIALEPLSGRMFWT-ELG-IKPRISGASIDGKNKFNLVDN-NIQW----PTGITIDYPSQRLYWA-DPKA------ 137 (713)
Q Consensus 72 ~~p~~iavD~~~~~ly~t-d~~-~~~~I~~~~~dG~~~~~l~~~-~~~~----p~glavd~~~~~LY~~-d~~~------ 137 (713)
.....+++.|..+.|+.. +.. ....|++.++++...+.++.. ...+ +..+++.+++++|+++ ....
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 334 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKF 334 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCE
T ss_pred ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcce
Confidence 223468888866555333 332 223688888877665555422 1111 2478999988888886 3333
Q ss_pred CcEEEEe-CCCCc---eeEEEecCCCCccceeeeeeCCeEEEEeCC----CCcEEEEcccCC
Q psy6570 138 RTIESIN-LNGKD---RFVVYHTEDNGYKPYKLEVFEDNLYFSTYR----TNNILKINKFGN 191 (713)
Q Consensus 138 ~~I~~~~-~~g~~---~~~~~~~~~~~~~p~~i~~~~~~ly~td~~----~~~i~~~~~~~~ 191 (713)
.+|+.++ .++.. .+.+............++.+++.||++... ...|++++..++
T Consensus 335 ~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 335 YHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN 396 (723)
T ss_dssp EEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred eEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence 3688888 56554 333332111111112344457788776443 345777775543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.18 Score=53.09 Aligned_cols=138 Identities=11% Similarity=0.099 Sum_probs=80.1
Q ss_pred cCCceeEEEccCcc-cEEec-CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCC
Q psy6570 5 SSGNVTRVKREMNL-KTVLS-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPL 82 (713)
Q Consensus 5 ~~~~I~~~~~~~~~-~~~~~-~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~ 82 (713)
.++.|...+..... ...+. .......|++++.+. ++++-. ..+.|.+.++.+......+.........|++.|.
T Consensus 128 ~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~-~l~sgs---~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~ 203 (410)
T 1vyh_C 128 EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK-LLASCS---ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 203 (410)
T ss_dssp SSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSS-EEEEEE---TTSCCCEEETTSSCEEECCCCCSSCEEEEEECSS
T ss_pred CCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEEe---CCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCC
Confidence 35666666766432 22222 234467889987654 444544 4677888888765443333233356778999985
Q ss_pred CCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCc
Q psy6570 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKD 149 (713)
Q Consensus 83 ~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~ 149 (713)
...| ++-.... .|...++........+.........+++++.+. ++++-...+.|...++....
T Consensus 204 ~~~l-~s~s~D~-~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~ 267 (410)
T 1vyh_C 204 GDHI-VSASRDK-TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKE 267 (410)
T ss_dssp SSEE-EEEETTS-EEEEEETTTCCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCC
T ss_pred CCEE-EEEeCCC-eEEEEECCCCcEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCc
Confidence 5544 4443333 677777765444334444445567788886544 44454455677777765443
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.31 Score=49.67 Aligned_cols=164 Identities=10% Similarity=0.040 Sum_probs=92.1
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCc
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNK 107 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~ 107 (713)
...+++.+ .+.|+ +-. ..+.|.+.++........+.........|++.|. +.++++..... .|...++.....
T Consensus 146 v~~~~~~~-~~~l~-s~s---~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~sg~~d~-~v~~wd~~~~~~ 218 (340)
T 1got_B 146 LSCCRFLD-DNQIV-TSS---GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD-TRLFVSGACDA-SAKLWDVREGMC 218 (340)
T ss_dssp EEEEEEEE-TTEEE-EEE---TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT-SSEEEEEETTS-CEEEEETTTCSE
T ss_pred EEEEEECC-CCcEE-EEE---CCCcEEEEECCCCcEEEEEcCCCCceEEEEECCC-CCEEEEEeCCC-cEEEEECCCCee
Confidence 34455543 24443 333 4677888887655444334333456788999974 55555544433 677777765444
Q ss_pred EEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEE
Q psy6570 108 FNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKI 186 (713)
Q Consensus 108 ~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~ 186 (713)
...+.........|+++|....|+ +-...+.|...++....................+++. .+.++.+-...+.|...
T Consensus 219 ~~~~~~h~~~v~~v~~~p~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vw 297 (340)
T 1got_B 219 RQTFTGHESDINAICFFPNGNAFA-TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEEcCCcCCEEEEEEcCCCCEEE-EEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEE
Confidence 444443445678999997665554 4445677888887654433222221111123445554 44555565666778777
Q ss_pred cccCCCcceeeec
Q psy6570 187 NKFGNSDFNVLAN 199 (713)
Q Consensus 187 ~~~~~~~~~~~~~ 199 (713)
+.........+..
T Consensus 298 d~~~~~~~~~~~~ 310 (340)
T 1got_B 298 DALKADRAGVLAG 310 (340)
T ss_dssp ETTTCCEEEEEEC
T ss_pred EcccCcEeeEeec
Confidence 7655544444433
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.13 Score=53.42 Aligned_cols=158 Identities=9% Similarity=0.027 Sum_probs=100.1
Q ss_pred CCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcC--CCCCcceEEEcCCCCcEEEEccCCCCeEEEEec
Q psy6570 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNT--GLNEPYDIALEPLSGRMFWTELGIKPRISGASI 102 (713)
Q Consensus 25 ~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~--~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~ 102 (713)
......|++.+.+..++++-. ..+.|.+.++++.....++.. .......|++.|.++.++++-.... .|...++
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~ 148 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGS---KGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG-ATTLRDF 148 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEE---BTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT-EEEEEET
T ss_pred CCCEEEEEECCCCCCEEEEEc---CCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC-EEEEEEC
Confidence 345678889887634555544 467899999986555544432 2356778999885555555544434 7888888
Q ss_pred CCCCcEEEEeCC--CCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeee--CCeEEEEeC
Q psy6570 103 DGKNKFNLVDNN--IQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF--EDNLYFSTY 178 (713)
Q Consensus 103 dG~~~~~l~~~~--~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~--~~~ly~td~ 178 (713)
.+.....+.... ......|++.+....|+.+. ..+.|...++++.....+... ......+++. +.+++++..
T Consensus 149 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~h---~~~v~~~~~~~~~~~~l~s~~ 224 (383)
T 3ei3_B 149 SGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGD-STGRLLLLGLDGHEIFKEKLH---KAKVTHAEFNPRCDWLMATSS 224 (383)
T ss_dssp TSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEE-TTSEEEEEETTSCEEEEEECS---SSCEEEEEECSSCTTEEEEEE
T ss_pred CCCceEEEeccCCCCCCeEEEEECCCCCEEEEEC-CCCCEEEEECCCCEEEEeccC---CCcEEEEEECCCCCCEEEEEe
Confidence 875544444322 24468899998776666554 557888999876655554432 2234556654 333666666
Q ss_pred CCCcEEEEcccC
Q psy6570 179 RTNNILKINKFG 190 (713)
Q Consensus 179 ~~~~i~~~~~~~ 190 (713)
..+.|..++...
T Consensus 225 ~d~~i~iwd~~~ 236 (383)
T 3ei3_B 225 VDATVKLWDLRN 236 (383)
T ss_dssp TTSEEEEEEGGG
T ss_pred CCCEEEEEeCCC
Confidence 677777777654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.082 Score=56.54 Aligned_cols=136 Identities=7% Similarity=-0.028 Sum_probs=81.1
Q ss_pred CCceeEEEcc--Ccc--cEEe--cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEE----EEcCCCCCcc
Q psy6570 6 SGNVTRVKRE--MNL--KTVL--SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRT----LLNTGLNEPY 75 (713)
Q Consensus 6 ~~~I~~~~~~--~~~--~~~~--~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~----l~~~~~~~p~ 75 (713)
++.|...++. +.. .++. .....+.+|++.+.+..|+.++. .+.|.+.++....... .+......+.
T Consensus 124 dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~ 199 (450)
T 2vdu_B 124 DKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK----FGDVYSIDINSIPEEKFTQEPILGHVSMLT 199 (450)
T ss_dssp GTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSEEEEEETTSCCCSSCCCCCSEECSSCEE
T ss_pred CCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC----CCcEEEEecCCcccccccceeeecccCceE
Confidence 4666666665 322 2221 22355788999988777877764 6778888875433211 1111235678
Q ss_pred eEEEcCC---CCcEEEEccCCCCeEEEEecCCCCc-EEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCc
Q psy6570 76 DIALEPL---SGRMFWTELGIKPRISGASIDGKNK-FNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKD 149 (713)
Q Consensus 76 ~iavD~~---~~~ly~td~~~~~~I~~~~~dG~~~-~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~ 149 (713)
.|++.|. ..+|+.++.. . .|...++..... ..++.........|+++ ...+|+.+. ..+.|...++....
T Consensus 200 ~~~~sp~~~~~~~l~s~~~d-~-~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~~~ 273 (450)
T 2vdu_B 200 DVHLIKDSDGHQFIITSDRD-E-HIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKTGK 273 (450)
T ss_dssp EEEEEECTTSCEEEEEEETT-S-CEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEE-SSSEEEEEETTTCC
T ss_pred EEEEcCCCCCCcEEEEEcCC-C-cEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEe-CCCeEEEEECCCCc
Confidence 8999986 4445544433 3 677777764433 33333344567889998 555665554 56788888876543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=96.58 E-value=0.13 Score=53.57 Aligned_cols=120 Identities=12% Similarity=0.086 Sum_probs=75.8
Q ss_pred CCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcC---C---CCCcceEEEcCCCCcEEEEccCC-CCeE
Q psy6570 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNT---G---LNEPYDIALEPLSGRMFWTELGI-KPRI 97 (713)
Q Consensus 25 ~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~---~---~~~p~~iavD~~~~~ly~td~~~-~~~I 97 (713)
...+..|++.+.+ ++++-. ..+.|.+.++........+.. . ...+..|+++|....|+...... .+.|
T Consensus 186 ~~~i~~~~~~~~~--~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i 260 (397)
T 1sq9_A 186 SQFATSVDISERG--LIATGF---NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI 260 (397)
T ss_dssp CCCCCEEEECTTS--EEEEEC---TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEE
T ss_pred CCCceEEEECCCc--eEEEEe---CCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceE
Confidence 4557889998876 444444 578899999875444333333 2 46688999998655555544321 0378
Q ss_pred EEEecCCCCcEEEEeC-------------CCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCce
Q psy6570 98 SGASIDGKNKFNLVDN-------------NIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDR 150 (713)
Q Consensus 98 ~~~~~dG~~~~~l~~~-------------~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~ 150 (713)
...++........+.. .......|++++...+|+.+. ..+.|...++.....
T Consensus 261 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 261 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVKTKER 325 (397)
T ss_dssp EEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEE
T ss_pred EEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCCce
Confidence 8888765544444433 344568899998766665554 567888888865433
|
| >2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0015 Score=56.11 Aligned_cols=57 Identities=30% Similarity=0.689 Sum_probs=37.0
Q ss_pred CCCCCcEeccCC--CCc-cccCCCCCcCCCCccCCCCCCCCCCeeecC-CCCCeecCCCCccCCCCC
Q psy6570 422 KCQNGGVCVNKT--TGL-ECDCPKFYYGKNCQYSQCKNYCVNGECSIT-DSGPKCMCSPGYSGKKCD 484 (713)
Q Consensus 422 ~C~~~~~C~~~~--~~~-~C~C~~G~~g~~C~~~~C~~~~~~~~C~~~-~~~~~C~C~~G~~g~~C~ 484 (713)
||.++|+|++.. .+| .|.|++||.|..|+++... .|... ...|++.+..+++|..|+
T Consensus 2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~~~~~------~C~~g~G~~YrG~~~~t~sG~~Cq 62 (122)
T 2fd6_A 2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSK------TCYEGNGHFYRGKASTDTMGRPCL 62 (122)
T ss_dssp CCCSSCEEEECTTTTTCEEEECCTTEESTTSCEESSC------CSBCSSCTTCCSCCCBBTTSCBBC
T ss_pred CCCCcCCcCCCcccCCCCCccCCCCCCCccccccCcC------CCcccccccceeeccccccCCccc
Confidence 688888887764 445 8888888888888854321 13222 224677777777776665
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.081 Score=56.30 Aligned_cols=182 Identities=11% Similarity=0.071 Sum_probs=103.9
Q ss_pred cCCceeEEEccCcc-cEEec---CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCC--CCCcceEE
Q psy6570 5 SSGNVTRVKREMNL-KTVLS---NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG--LNEPYDIA 78 (713)
Q Consensus 5 ~~~~I~~~~~~~~~-~~~~~---~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~--~~~p~~ia 78 (713)
.++.|...++.... ..++. .-....+|+|.+.++.++++-. ..+.|.+.++.+...+.+.... ......|+
T Consensus 140 ~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 216 (435)
T 4e54_B 140 KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASS---MEGTTRLQDFKGNILRVFASSDTINIWFCSLD 216 (435)
T ss_dssp TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEEC---SSSCEEEEETTSCEEEEEECCSSCSCCCCCEE
T ss_pred CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEe---CCCEEEEeeccCCceeEEeccCCCCccEEEEE
Confidence 35666666665433 22222 2344788999876666666665 5788999999987766655432 22356789
Q ss_pred EcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCc-eeEEEecC
Q psy6570 79 LEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKD-RFVVYHTE 157 (713)
Q Consensus 79 vD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~-~~~~~~~~ 157 (713)
+++.. .++++-.... .|...++++.....+. ........|++++....++++-...+.|...++.... ...+....
T Consensus 217 ~~~~~-~~l~~g~~dg-~i~~wd~~~~~~~~~~-~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~ 293 (435)
T 4e54_B 217 VSASS-RMVVTGDNVG-NVILLNMDGKELWNLR-MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL 293 (435)
T ss_dssp EETTT-TEEEEECSSS-BEEEEESSSCBCCCSB-CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC
T ss_pred ECCCC-CEEEEEeCCC-cEeeeccCcceeEEEe-cccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEee
Confidence 98754 4444443333 7888888876543332 2234567899998877777766555666666654322 11111110
Q ss_pred CCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCC
Q psy6570 158 DNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNS 192 (713)
Q Consensus 158 ~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~ 192 (713)
........|++. .+.++++....+.|..++...+.
T Consensus 294 ~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 294 PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred eccccccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence 001112344443 33444554556677777655443
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.027 Score=67.69 Aligned_cols=155 Identities=7% Similarity=-0.015 Sum_probs=95.4
Q ss_pred CCceEEEe-ccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCC-CcceEEEcCCCCcEEEEccCCCCeEE-EEecC
Q psy6570 27 DPRGVAVD-WVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLN-EPYDIALEPLSGRMFWTELGIKPRIS-GASID 103 (713)
Q Consensus 27 ~p~gla~D-~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~-~p~~iavD~~~~~ly~td~~~~~~I~-~~~~d 103 (713)
.+..+++. +.+..|+++.. ..|.+.++++.....+. .... .+..+++. ..+.|++... .. +|+ ..+++
T Consensus 297 ~v~~~~~S~pdG~~la~~~~-----~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~s-dg~~l~~~s~-~~-~l~~~~d~~ 367 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVSR-----GQAFIQDVSGTYVLKVP-EPLRIRYVRRGGD-TKVAFIHGTR-EG-DFLGIYDYR 367 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEET-----TEEEEECTTSSBEEECS-CCSCEEEEEECSS-SEEEEEEEET-TE-EEEEEEETT
T ss_pred ccceeeecCCCCCEEEEEEc-----CEEEEEcCCCCceEEcc-CCCcceEEeeeEc-CCCeEEEEEC-CC-ceEEEEECC
Confidence 36788888 88777776653 57888888766544432 2222 45566666 4445665543 33 788 88888
Q ss_pred CCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEeCC----
Q psy6570 104 GKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYR---- 179 (713)
Q Consensus 104 G~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~---- 179 (713)
+...+.+. .....+..+++++++++|+++.. .+.|+.+++++.....+............+..++.+|.++...
T Consensus 368 ~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~-~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~ 445 (1045)
T 1k32_A 368 TGKAEKFE-ENLGNVFAMGVDRNGKFAVVAND-RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGE 445 (1045)
T ss_dssp TCCEEECC-CCCCSEEEEEECTTSSEEEEEET-TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSST
T ss_pred CCCceEec-CCccceeeeEECCCCCEEEEECC-CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcccc
Confidence 77665554 34456789999998888887764 4589999997766555543321111223333345567666432
Q ss_pred -----CCcEEEEcccCCC
Q psy6570 180 -----TNNILKINKFGNS 192 (713)
Q Consensus 180 -----~~~i~~~~~~~~~ 192 (713)
...|+.++..++.
T Consensus 446 ~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 446 TDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp TCSCCEEEEEEEETTTTE
T ss_pred ccCCCCCeEEEEECCCCc
Confidence 2467777665443
|
| >2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... | Back alignment and structure |
|---|
Probab=96.51 E-value=0.00092 Score=48.25 Aligned_cols=29 Identities=24% Similarity=0.552 Sum_probs=24.8
Q ss_pred CCCCCC--CCCCCCeeeccCCCceeeeCCCCcc
Q psy6570 221 NHCDDK--PCHQSALCINLPSSHTCLCPDHLTE 251 (713)
Q Consensus 221 ~~C~~~--~C~~~~~C~~~~g~~~C~C~~G~~~ 251 (713)
|||... +| .+.|+|++|+|+|.|++||..
T Consensus 2 dEC~~~~~~C--~~~C~nt~Gsy~C~C~~Gy~L 32 (55)
T 2jkh_L 2 KLCSLDNGDC--DQFCHEEQNSVVCSCARGYTL 32 (55)
T ss_dssp CCTTTGGGGC--SSEEEEETTEEEEECCTTEEE
T ss_pred ccccCCCCCc--CcEeEcCCCCeEEeCCCCCEE
Confidence 678754 57 689999999999999999983
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.29 Score=51.28 Aligned_cols=110 Identities=11% Similarity=0.004 Sum_probs=69.1
Q ss_pred EEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEE
Q psy6570 32 AVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLV 111 (713)
Q Consensus 32 a~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~ 111 (713)
++.+.++.| ++-. ..+.|.+.++.......++.........|++.|...+|+... ... .|...+++.......+
T Consensus 104 ~~~~~~~~l-~~~~---~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~d~-~i~iwd~~~~~~~~~~ 177 (420)
T 3vl1_A 104 TAKLQMRRF-ILGT---TEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSS-QDM-QLKIWSVKDGSNPRTL 177 (420)
T ss_dssp EECSSSCEE-EEEE---TTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEE-TTS-EEEEEETTTCCCCEEE
T ss_pred EEecCCCEE-EEEE---CCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEe-CCC-eEEEEeCCCCcCceEE
Confidence 334444444 4444 467899999887665555444446788999998655554443 333 7888888654444444
Q ss_pred eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCC
Q psy6570 112 DNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGK 148 (713)
Q Consensus 112 ~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~ 148 (713)
.........|++++...+|+.+. ..+.|...++...
T Consensus 178 ~~h~~~v~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~ 213 (420)
T 3vl1_A 178 IGHRATVTDIAIIDRGRNVLSAS-LDGTIRLWECGTG 213 (420)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTTT
T ss_pred cCCCCcEEEEEEcCCCCEEEEEc-CCCcEEEeECCCC
Confidence 44555678999998776666554 4566777777543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.44 Score=49.67 Aligned_cols=186 Identities=11% Similarity=0.035 Sum_probs=98.3
Q ss_pred CCceeEEEccCcccE-Eec-CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCC
Q psy6570 6 SGNVTRVKREMNLKT-VLS-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLS 83 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~-~~~-~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~ 83 (713)
++.|...++.....+ .+. .......|++.+.+..|+ +-. ..+.|.+.++........+.. ...+..+++.|.+
T Consensus 144 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~-s~s---~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~ 218 (393)
T 1erj_A 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV-SGS---GDRTVRIWDLRTGQCSLTLSI-EDGVTTVAVSPGD 218 (393)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-EEE---TTSEEEEEETTTTEEEEEEEC-SSCEEEEEECSTT
T ss_pred CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEE-Eec---CCCcEEEEECCCCeeEEEEEc-CCCcEEEEEECCC
Confidence 455666666543322 122 233467788887766665 444 467888889876544333322 2457789998867
Q ss_pred CcEEEEccCCCCeEEEEecCCCCcEEEEe-------CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCcee-----
Q psy6570 84 GRMFWTELGIKPRISGASIDGKNKFNLVD-------NNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRF----- 151 (713)
Q Consensus 84 ~~ly~td~~~~~~I~~~~~dG~~~~~l~~-------~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~----- 151 (713)
+.++++..... .|...++........+. ........|++++.+..|+.+ ...+.|...++......
T Consensus 219 ~~~l~~~s~d~-~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~-s~d~~v~~wd~~~~~~~~~~~~ 296 (393)
T 1erj_A 219 GKYIAAGSLDR-AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG-SLDRSVKLWNLQNANNKSDSKT 296 (393)
T ss_dssp CCEEEEEETTS-CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEEC-----------
T ss_pred CCEEEEEcCCC-cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEE-eCCCEEEEEECCCCCCcccccC
Confidence 77666654434 67777766443322221 122346789999776666544 44566777666432110
Q ss_pred -----EEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceeee
Q psy6570 152 -----VVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLA 198 (713)
Q Consensus 152 -----~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~ 198 (713)
..............+++. ++.++++-...+.|...+...+.....+.
T Consensus 297 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~ 349 (393)
T 1erj_A 297 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 349 (393)
T ss_dssp ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC
Confidence 000000001122344443 33444455556677777765555444443
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.27 Score=50.42 Aligned_cols=178 Identities=12% Similarity=0.061 Sum_probs=95.3
Q ss_pred CCceeEEEccCcc--cE-Ee-cCCCCCceEEEecc--CCeEEEeecCCCCCCeEEEEecCCce--EEEEEcCCCCCcceE
Q psy6570 6 SGNVTRVKREMNL--KT-VL-SNLHDPRGVAVDWV--GKNLYWTDAGGRSSNNIMVSTLEGRK--KRTLLNTGLNEPYDI 77 (713)
Q Consensus 6 ~~~I~~~~~~~~~--~~-~~-~~~~~p~gla~D~~--~~~ly~td~~~~~~~~I~~~~~~G~~--~~~l~~~~~~~p~~i 77 (713)
++.|...++.... .+ .. .....+..|++.+. +..|+.+. ..+.|.+.++.... ....+.........|
T Consensus 78 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~ 153 (379)
T 3jrp_A 78 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS----SDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 153 (379)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE----TTSEEEEEECCTTSCCCEEEEECCTTCEEEE
T ss_pred CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEec----CCCcEEEEecCCCCceeeEEecCCCCceEEE
Confidence 4666666666542 11 12 23445678888877 55555554 46788888887652 223333334567889
Q ss_pred EEcCC------------CCcEEEEccCCCCeEEEEecCCCCcE-EEE---eCCCCCCeeEEEeCCC--CeEEEEcCCCCc
Q psy6570 78 ALEPL------------SGRMFWTELGIKPRISGASIDGKNKF-NLV---DNNIQWPTGITIDYPS--QRLYWADPKART 139 (713)
Q Consensus 78 avD~~------------~~~ly~td~~~~~~I~~~~~dG~~~~-~l~---~~~~~~p~glavd~~~--~~LY~~d~~~~~ 139 (713)
++.|. ++.++++-.... .|...++...... .++ .........|++++.. +.++++-...+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~ 232 (379)
T 3jrp_A 154 SWAPATIEEDGEHNGTKESRKFVTGGADN-LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 232 (379)
T ss_dssp EECCCC----------CTTCEEEEEETTS-CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred EEcCccccccccccCCCCCCEEEEEeCCC-eEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE
Confidence 99884 355555543333 5666666543322 222 2234456789999873 444445445566
Q ss_pred EEEEeCCCCc---eeEEEecCCCCccceeeeee--CCeEEEEeCCCCcEEEEccc
Q psy6570 140 IESINLNGKD---RFVVYHTEDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 140 I~~~~~~g~~---~~~~~~~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~ 189 (713)
|...++.... ...+............+++. +..|+.+. ..+.|..++..
T Consensus 233 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~i~iw~~~ 286 (379)
T 3jrp_A 233 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG-GDNKVTLWKEN 286 (379)
T ss_dssp EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE-SSSSEEEEEEE
T ss_pred EEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEec-CCCcEEEEeCC
Confidence 7777765542 22222221112223445553 34454443 35666666544
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.2 Score=51.93 Aligned_cols=119 Identities=6% Similarity=0.001 Sum_probs=77.0
Q ss_pred CCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCC--cEEEEccCCCCeEEEEec
Q psy6570 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSG--RMFWTELGIKPRISGASI 102 (713)
Q Consensus 25 ~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~--~ly~td~~~~~~I~~~~~ 102 (713)
...+..|++.+.++.++++-. ..+.|.+.+++.......+.. ......+++.+... .++++..... .|...++
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~d~ 173 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSS---FDKTLKVWDTNTLQTADVFNF-EETVYSHHMSPVSTKHCLVAVGTRGP-KVQLCDL 173 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEE---TTSEEEEEETTTTEEEEEEEC-SSCEEEEEECSSCSSCCEEEEEESSS-SEEEEES
T ss_pred CCcEEEEEEccCCCcEEEEEe---CCCeEEEeeCCCCccceeccC-CCceeeeEeecCCCCCcEEEEEcCCC-eEEEEeC
Confidence 345677888875555555555 578899999887665544432 24566777776533 2444433333 6888888
Q ss_pred CCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCC
Q psy6570 103 DGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGK 148 (713)
Q Consensus 103 dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~ 148 (713)
........+.........|++++...+|+++-...+.|...++...
T Consensus 174 ~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~ 219 (408)
T 4a11_B 174 KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRA 219 (408)
T ss_dssp SSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCS
T ss_pred CCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCC
Confidence 7555444444445567889999888877766666778888887543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=96.42 E-value=0.33 Score=49.63 Aligned_cols=157 Identities=9% Similarity=0.007 Sum_probs=88.9
Q ss_pred CCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCce--EEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEec
Q psy6570 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK--KRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASI 102 (713)
Q Consensus 25 ~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~--~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~ 102 (713)
-.....|++.+.++.|+.+. ..+.|.+.++++.. ....+......+..|++.|...+|+..... . .|...++
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~----~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-g-~i~vwd~ 81 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICP----NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-R-NAYVWTL 81 (372)
T ss_dssp SSCCCEEEECTTSSEEEEEC----SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-S-CEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEe----CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC-C-eEEEEEC
Confidence 34568899998766665553 36789999887764 222232334567899999865555554432 3 5666666
Q ss_pred CCCCcEEEE--eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCcee-EEEec-CCCCccceeeeee-CCeEEEEe
Q psy6570 103 DGKNKFNLV--DNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRF-VVYHT-EDNGYKPYKLEVF-EDNLYFST 177 (713)
Q Consensus 103 dG~~~~~l~--~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~-~~~~~-~~~~~~p~~i~~~-~~~ly~td 177 (713)
+.......+ .........|++++...+|+.+. ..+.|...+++..... .+... .........+++. ++.++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 160 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 160 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEe-CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEE
Confidence 544322222 22334578899998777777665 3456666665544321 11111 1112234556654 33445554
Q ss_pred CCCCcEEEEcc
Q psy6570 178 YRTNNILKINK 188 (713)
Q Consensus 178 ~~~~~i~~~~~ 188 (713)
...+.|..++.
T Consensus 161 ~~dg~i~~~d~ 171 (372)
T 1k8k_C 161 SCDFKCRIFSA 171 (372)
T ss_dssp ETTSCEEEEEC
T ss_pred cCCCCEEEEEc
Confidence 55566766663
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.031 Score=57.23 Aligned_cols=122 Identities=10% Similarity=0.090 Sum_probs=79.7
Q ss_pred CCCCCceEEEeccCCeEEEeecC-----CCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCC---CC
Q psy6570 24 NLHDPRGVAVDWVGKNLYWTDAG-----GRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGI---KP 95 (713)
Q Consensus 24 ~~~~p~gla~D~~~~~ly~td~~-----~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~---~~ 95 (713)
.+..+..+++ .+++|+++-.. ......|++.++++...+.+ .....+++.|..++|+++.... ..
T Consensus 13 ~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 13 KFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-----ENATMPRISPDGKKIAFMRANEEKKVS 85 (347)
T ss_dssp CSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-----ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred eeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-----ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence 3444566677 45667665320 00245788999888765555 3467789998887887765422 23
Q ss_pred eEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCC--------------------------CCcEEEEeCCCCc
Q psy6570 96 RISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPK--------------------------ARTIESINLNGKD 149 (713)
Q Consensus 96 ~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~--------------------------~~~I~~~~~~g~~ 149 (713)
.|++.++++...+.+..... ...+++.+++++|+++... ..+|+.+++++..
T Consensus 86 ~l~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 163 (347)
T 2gop_A 86 EIWVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE 163 (347)
T ss_dssp EEEEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred eEEEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence 69999998766555554332 6889999888888887421 3568889987765
Q ss_pred e-eEEE
Q psy6570 150 R-FVVY 154 (713)
Q Consensus 150 ~-~~~~ 154 (713)
. +.+.
T Consensus 164 ~~~~l~ 169 (347)
T 2gop_A 164 VIEEFE 169 (347)
T ss_dssp EEEEEE
T ss_pred EEeeec
Confidence 5 4443
|
| >2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.003 Score=54.11 Aligned_cols=60 Identities=25% Similarity=0.402 Sum_probs=42.6
Q ss_pred CCCCCCeEecCC-CCcc-eeecCCCcccCCCCcCCCCCCCCCCCCeecCCCCccCCCCCceeeCCCCcccCCCCc
Q psy6570 598 YCDNAGLCSYSK-QGKP-VCTCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQT 670 (713)
Q Consensus 598 ~C~~~g~C~~~~-~g~~-~C~C~~G~~G~~C~~~~~C~~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~ 670 (713)
+|.|+|+|++.. ..++ .|.|++||+|..|+.... . .|.. .....|++.+..+++|..|+.
T Consensus 2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~~~~--~------~C~~-----g~G~~YrG~~~~t~sG~~Cq~ 63 (122)
T 2fd6_A 2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKS--K------TCYE-----GNGHFYRGKASTDTMGRPCLP 63 (122)
T ss_dssp CCCSSCEEEECTTTTTCEEEECCTTEESTTSCEESS--C------CSBC-----SSCTTCCSCCCBBTTSCBBCC
T ss_pred CCCCcCCcCCCcccCCCCCccCCCCCCCccccccCc--C------CCcc-----cccccceeeccccccCCcccC
Confidence 588889998763 1344 899999999999986321 1 2332 123348999999999999975
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.22 Score=49.49 Aligned_cols=174 Identities=7% Similarity=-0.008 Sum_probs=94.9
Q ss_pred CCceeEEEccCcccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCc
Q psy6570 6 SGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGR 85 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ 85 (713)
++.|...+.......+......+..+++.+..+.++++-. ..+.|.+.+. ++....+.......+..|++.+.. .
T Consensus 123 d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~i~d~-~~~~~~~~~~~~~~i~~~~~~~~~-~ 197 (313)
T 3odt_A 123 DKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTAS---ADKTIKLWQN-DKVIKTFSGIHNDVVRHLAVVDDG-H 197 (313)
T ss_dssp TSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEE---TTSCEEEEET-TEEEEEECSSCSSCEEEEEEEETT-E
T ss_pred CCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEE---CCCCEEEEec-CceEEEEeccCcccEEEEEEcCCC-e
Confidence 4445555522222222333444566777663444444444 4678888883 333333332234567789998754 4
Q ss_pred EEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCcccee
Q psy6570 86 MFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYK 165 (713)
Q Consensus 86 ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~ 165 (713)
|+... ... .|...++........+.........|++++.+ +|+ +-...+.|...++............ ......
T Consensus 198 ~~~~~-~dg-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~-~~~~dg~v~iwd~~~~~~~~~~~~~--~~~i~~ 271 (313)
T 3odt_A 198 FISCS-NDG-LIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIV-SCGEDRTVRIWSKENGSLKQVITLP--AISIWS 271 (313)
T ss_dssp EEEEE-TTS-EEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEE-EEETTSEEEEECTTTCCEEEEEECS--SSCEEE
T ss_pred EEEcc-CCC-eEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEE-EEecCCEEEEEECCCCceeEEEecc--CceEEE
Confidence 44333 333 78888887555444444455567899999765 554 4445678888887554433333221 223345
Q ss_pred eeee-CCeEEEEeCCCCcEEEEcccCC
Q psy6570 166 LEVF-EDNLYFSTYRTNNILKINKFGN 191 (713)
Q Consensus 166 i~~~-~~~ly~td~~~~~i~~~~~~~~ 191 (713)
+++. ++. +++-...+.|..++...+
T Consensus 272 ~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 272 VDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp EEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred EEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 5554 334 344445666776665433
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.19 Score=57.09 Aligned_cols=178 Identities=14% Similarity=0.105 Sum_probs=99.6
Q ss_pred CceeEEEccCcc---cEEecCCC-C---CceEEEeccCCeEEEeecCCCCCCeEEEEecCCc--eEEEEEcCCCCCcceE
Q psy6570 7 GNVTRVKREMNL---KTVLSNLH-D---PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR--KKRTLLNTGLNEPYDI 77 (713)
Q Consensus 7 ~~I~~~~~~~~~---~~~~~~~~-~---p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~--~~~~l~~~~~~~p~~i 77 (713)
.+|++.++.+.. +++...-. . -.++++.+.++.|+++.........|++.++++. ..+.|... ...-...
T Consensus 208 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~-~~~~~~~ 286 (693)
T 3iuj_A 208 HKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD-LDADVSL 286 (693)
T ss_dssp CEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS-SSSCEEE
T ss_pred cEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC-CCceEEE
Confidence 457787777643 23333322 2 2467888888888776542223358999998654 33444422 1222222
Q ss_pred EEcCCCCcEEEEccC--CCCeEEEEecCCCCc---EEEEeCCCCCCeeEEEeCCCCeEEEEcCC--CCcEEEEeCCCCce
Q psy6570 78 ALEPLSGRMFWTELG--IKPRISGASIDGKNK---FNLVDNNIQWPTGITIDYPSQRLYWADPK--ARTIESINLNGKDR 150 (713)
Q Consensus 78 avD~~~~~ly~td~~--~~~~I~~~~~dG~~~---~~l~~~~~~~p~glavd~~~~~LY~~d~~--~~~I~~~~~~g~~~ 150 (713)
+++.++.||+.... .+.+|+++++++... +.|+...-... .+++.+++|+++... ..+|+.++++|...
T Consensus 287 -~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~ 362 (693)
T 3iuj_A 287 -VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATARVEQFDYEGKRV 362 (693)
T ss_dssp -EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEEEEEECTTSCEE
T ss_pred -EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeEEEEEECCCCee
Confidence 55557777775432 245899999987665 55654332222 555558888887543 34799999998765
Q ss_pred eEEEecCCCCccceeee--eeCCeEEEEeC---CCCcEEEEcccCC
Q psy6570 151 FVVYHTEDNGYKPYKLE--VFEDNLYFSTY---RTNNILKINKFGN 191 (713)
Q Consensus 151 ~~~~~~~~~~~~p~~i~--~~~~~ly~td~---~~~~i~~~~~~~~ 191 (713)
+.+..... ..-.++. .+++.|+++-. ....|+.++..++
T Consensus 363 ~~l~~p~~--~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 363 REVALPGL--GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEECCSSS--SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEeecCCC--ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 55432211 1112222 23455655422 2356777776544
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.34 Score=50.70 Aligned_cols=178 Identities=11% Similarity=0.099 Sum_probs=97.9
Q ss_pred CCceeEEEccCcccEEe--cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCc-eEEEEEcCCCCCcceEEEcCC
Q psy6570 6 SGNVTRVKREMNLKTVL--SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR-KKRTLLNTGLNEPYDIALEPL 82 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~--~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~-~~~~l~~~~~~~p~~iavD~~ 82 (713)
++.|...++.+...... .....+..|++.+.+..|+.+ . ..+.|.+.++... ....+ .........|++.|.
T Consensus 118 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-s---~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~ 192 (420)
T 3vl1_A 118 EGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISS-S---QDMQLKIWSVKDGSNPRTL-IGHRATVTDIAIIDR 192 (420)
T ss_dssp TSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEE-E---TTSEEEEEETTTCCCCEEE-ECCSSCEEEEEEETT
T ss_pred CCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEE-e---CCCeEEEEeCCCCcCceEE-cCCCCcEEEEEEcCC
Confidence 45666666654432221 234456789998876655544 4 4678999998643 34444 333466889999986
Q ss_pred CCcEEEEccCCCCeEEEEecCCCCcEEEEeCC------------------------CCCCeeEEEeCCCCeEEEEcCCCC
Q psy6570 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDNN------------------------IQWPTGITIDYPSQRLYWADPKAR 138 (713)
Q Consensus 83 ~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~------------------------~~~p~glavd~~~~~LY~~d~~~~ 138 (713)
..+|+..... . .|...++........+... ......+++++....|+. -...+
T Consensus 193 ~~~l~s~~~d-~-~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg 269 (420)
T 3vl1_A 193 GRNVLSASLD-G-TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA-GHVSG 269 (420)
T ss_dssp TTEEEEEETT-S-CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEE-EETTS
T ss_pred CCEEEEEcCC-C-cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEE-EcCCC
Confidence 5555544432 3 5666666543332222210 123345566655545544 44566
Q ss_pred cEEEEeCCCCceeEEEecCCCCccceeeeee--CCeEEEEeCCCCcEEEEcccCCC
Q psy6570 139 TIESINLNGKDRFVVYHTEDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKFGNS 192 (713)
Q Consensus 139 ~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~ 192 (713)
.|...++............ .......+++. +..++++-...+.|..++...+.
T Consensus 270 ~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 270 VITVHNVFSKEQTIQLPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp CEEEEETTTCCEEEEECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred eEEEEECCCCceeEEcccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 7888887654433222211 12234555554 33256665666778888776543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.29 Score=55.76 Aligned_cols=180 Identities=8% Similarity=-0.029 Sum_probs=103.6
Q ss_pred ceeEEEccCcccEE--ecCCCCCceEEEeccCCeEEEeecCCC------------CCCeEEEEecCCceE--EEEEcCC-
Q psy6570 8 NVTRVKREMNLKTV--LSNLHDPRGVAVDWVGKNLYWTDAGGR------------SSNNIMVSTLEGRKK--RTLLNTG- 70 (713)
Q Consensus 8 ~I~~~~~~~~~~~~--~~~~~~p~gla~D~~~~~ly~td~~~~------------~~~~I~~~~~~G~~~--~~l~~~~- 70 (713)
.|+.+++.+...+. ... ....++++.+.++.||++..... ...+|++.++.+... +.+....
T Consensus 152 ~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~ 230 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD 230 (710)
T ss_dssp EEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred EEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC
Confidence 67777777644221 222 22567888888888888754210 134599989876442 2333322
Q ss_pred -CCCcceEEEcCCCCcEEEEccCC---CCeEEEEecCC------C--CcEEEEeCCCCCCeeEEEeCCCCeEEEEcC---
Q psy6570 71 -LNEPYDIALEPLSGRMFWTELGI---KPRISGASIDG------K--NKFNLVDNNIQWPTGITIDYPSQRLYWADP--- 135 (713)
Q Consensus 71 -~~~p~~iavD~~~~~ly~td~~~---~~~I~~~~~dG------~--~~~~l~~~~~~~p~glavd~~~~~LY~~d~--- 135 (713)
-....++++.|..++|+++.... ...|+..++++ . ..+.|.. .... ..-.+++.+++||+...
T Consensus 231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~s~~~~ 308 (710)
T 2xdw_A 231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID-NFEG-EYDYVTNEGTVFTFKTNRHS 308 (710)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC-SSSS-CEEEEEEETTEEEEEECTTC
T ss_pred CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC-CCCc-EEEEEeccCCEEEEEECCCC
Confidence 12345889998888888775421 34899999875 2 2444443 2221 22346667888888753
Q ss_pred CCCcEEEEeCCCCc---eeEEEecCCCCccceeeeee-CCeEEEEeCCCC--cEEEEcccCC
Q psy6570 136 KARTIESINLNGKD---RFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTN--NILKINKFGN 191 (713)
Q Consensus 136 ~~~~I~~~~~~g~~---~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~--~i~~~~~~~~ 191 (713)
...+|+++++++.. .+.+..... .....++++. +++|+++....+ +|++++...+
T Consensus 309 ~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g 369 (710)
T 2xdw_A 309 PNYRLINIDFTDPEESKWKVLVPEHE-KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG 369 (710)
T ss_dssp TTCEEEEEETTSCCGGGCEEEECCCS-SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC
T ss_pred CCCEEEEEeCCCCCcccceeccCCCC-CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC
Confidence 24579999998754 244443311 1123455665 677777654333 4666665333
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.17 Score=56.03 Aligned_cols=159 Identities=9% Similarity=-0.058 Sum_probs=90.6
Q ss_pred CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCC---CcceEEEcCC-CCcEEEEccCCCCeEEEEe
Q psy6570 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLN---EPYDIALEPL-SGRMFWTELGIKPRISGAS 101 (713)
Q Consensus 26 ~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~---~p~~iavD~~-~~~ly~td~~~~~~I~~~~ 101 (713)
..+..+++.+.+..++++-. ..+.|.+.++........+..... ....|++.|. ..+|+... ... .|...+
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~---~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg-~i~vwd 235 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVG---DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG-SDR-KISCFD 235 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEE---TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE-TTC-CEEEEE
T ss_pred ccEEEEEECCCCCcEEEEEe---CCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEe-CCC-eEEEEE
Confidence 34677888877664555555 578899999876554444433334 5788999987 44444444 333 688888
Q ss_pred cCCCCcEEEE-e---CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecC-CC-CccceeeeeeCCeEEE
Q psy6570 102 IDGKNKFNLV-D---NNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTE-DN-GYKPYKLEVFEDNLYF 175 (713)
Q Consensus 102 ~dG~~~~~l~-~---~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~-~~-~~~p~~i~~~~~~ly~ 175 (713)
+........+ . ........|++. ....|+.+ ...+.|...++............ .. ......+.+..+.+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 313 (615)
T 1pgu_A 236 GKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATV-GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII 313 (615)
T ss_dssp TTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEE-ETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred CCCCCEeEEecccccccCCceEEEEEc-CCCEEEEE-cCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEE
Confidence 7654443333 2 334456788998 44455444 45577888887643332222221 10 1223344443444444
Q ss_pred EeCCCCcEEEEcccCC
Q psy6570 176 STYRTNNILKINKFGN 191 (713)
Q Consensus 176 td~~~~~i~~~~~~~~ 191 (713)
+-...+.|..++...+
T Consensus 314 ~~~~~g~i~~~d~~~~ 329 (615)
T 1pgu_A 314 SLSLDGTLNFYELGHD 329 (615)
T ss_dssp EEETTSCEEEEETTEE
T ss_pred EEECCCCEEEEECCCC
Confidence 4455667777765543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.21 Score=51.77 Aligned_cols=139 Identities=8% Similarity=0.001 Sum_probs=79.7
Q ss_pred CCceeEEEccCcccEE-ecCCCCCceEEEeccCC--eEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCC
Q psy6570 6 SGNVTRVKREMNLKTV-LSNLHDPRGVAVDWVGK--NLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPL 82 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~-~~~~~~p~gla~D~~~~--~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~ 82 (713)
++.|...++.....+. ......+..+++.+... .++++-. ..+.|.+.++........+.........|++.|.
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~ 197 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGT---RGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPR 197 (408)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEE---SSSSEEEEESSSSCCCEEECCCCSCEEEEEECSS
T ss_pred CCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEc---CCCeEEEEeCCCcceeeeecCCCCcEEEEEECCC
Confidence 4556666665533222 33334456677766432 2444444 4678888888754433334333456789999987
Q ss_pred CCcEEEEccCCCCeEEEEecCCCCc-EEEE---------------eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCC
Q psy6570 83 SGRMFWTELGIKPRISGASIDGKNK-FNLV---------------DNNIQWPTGITIDYPSQRLYWADPKARTIESINLN 146 (713)
Q Consensus 83 ~~~ly~td~~~~~~I~~~~~dG~~~-~~l~---------------~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~ 146 (713)
...|+++-.... .|...++..... ...+ .........|++++....|+.+. ..+.|...++.
T Consensus 198 ~~~ll~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~ 275 (408)
T 4a11_B 198 YDYILATASADS-RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG-TDNRMRLWNSS 275 (408)
T ss_dssp CTTEEEEEETTS-CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETT
T ss_pred CCcEEEEEcCCC-cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec-CCCeEEEEECC
Confidence 776666554433 677777654321 1111 11233467899998766666554 45678888876
Q ss_pred CCc
Q psy6570 147 GKD 149 (713)
Q Consensus 147 g~~ 149 (713)
...
T Consensus 276 ~~~ 278 (408)
T 4a11_B 276 NGE 278 (408)
T ss_dssp TCC
T ss_pred CCc
Confidence 543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.16 Score=52.43 Aligned_cols=135 Identities=10% Similarity=-0.064 Sum_probs=73.1
Q ss_pred cCCceeEEEccCcc-cEE--e-cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCce---EEEEEcCCCCCcceE
Q psy6570 5 SSGNVTRVKREMNL-KTV--L-SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK---KRTLLNTGLNEPYDI 77 (713)
Q Consensus 5 ~~~~I~~~~~~~~~-~~~--~-~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~---~~~l~~~~~~~p~~i 77 (713)
.++.|...++.+.. +.+ + ........|++.+.++.|+... ..+.|.+.+++... ....+.........|
T Consensus 31 ~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s----~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~ 106 (377)
T 3dwl_C 31 ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCS----QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFV 106 (377)
T ss_dssp SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEE----TTSSEEEC------CCCCEEECCCCSSCEEEE
T ss_pred CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEe----CCCeEEEEEcCCCCceeeeeEecccCCceEEE
Confidence 45677777776542 111 2 2233467888988766665544 35778888876544 222222333567789
Q ss_pred EEcCCCCcEEEEccCCCCeEEEEecCCCCc---EEEEeC-CCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCC
Q psy6570 78 ALEPLSGRMFWTELGIKPRISGASIDGKNK---FNLVDN-NIQWPTGITIDYPSQRLYWADPKARTIESINLN 146 (713)
Q Consensus 78 avD~~~~~ly~td~~~~~~I~~~~~dG~~~---~~l~~~-~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~ 146 (713)
++.|....|+..... . .|...+++.... ...+.. .......|++++.+.+|+.+. ..+.|...++.
T Consensus 107 ~~~~~~~~l~~~~~d-~-~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~ 176 (377)
T 3dwl_C 107 RWSPNEDKFAVGSGA-R-VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC-ADRKAYVLSAY 176 (377)
T ss_dssp ECCTTSSCCEEEESS-S-CEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE-SSSCEEEEEEC
T ss_pred EECCCCCEEEEEecC-C-eEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe-CCCEEEEEEEE
Confidence 999866666655533 2 576666665431 223333 445678999998766666554 34566666653
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.11 Score=52.99 Aligned_cols=180 Identities=6% Similarity=0.006 Sum_probs=95.6
Q ss_pred CCceeEEEccCccc--EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEE---cCCCCCcceEEEc
Q psy6570 6 SGNVTRVKREMNLK--TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLL---NTGLNEPYDIALE 80 (713)
Q Consensus 6 ~~~I~~~~~~~~~~--~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~---~~~~~~p~~iavD 80 (713)
++.|...++..... .+......+..|++.+.++.++++-. ..+.|.+.++........+ ......+..|+++
T Consensus 94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS---KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEE---TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEe---CCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 45666666654332 22224455788888874455555554 4678999998765544444 2334668899999
Q ss_pred CCCCcEEEEccCCCCeEEEEecCCCCcEE----------------------------EEeCCCCCCeeEEEeCCCCeEEE
Q psy6570 81 PLSGRMFWTELGIKPRISGASIDGKNKFN----------------------------LVDNNIQWPTGITIDYPSQRLYW 132 (713)
Q Consensus 81 ~~~~~ly~td~~~~~~I~~~~~dG~~~~~----------------------------l~~~~~~~p~glavd~~~~~LY~ 132 (713)
|....|+.+... . .|...++....... ...........|+++ .+ +++
T Consensus 171 ~~~~~l~~~~~d-g-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~ 245 (366)
T 3k26_A 171 LLGEKIMSCGMD-H-SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LIL 245 (366)
T ss_dssp TTSSEEEEEETT-S-CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEE
T ss_pred CCCCEEEEecCC-C-CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEE
Confidence 865555555432 3 57776665321110 000123345677777 34 444
Q ss_pred EcCCCCcEEEEeCCCCce------------eEEEecCCCCccceeee--ee-CCeEEEEeCCCCcEEEEcccCCCc
Q psy6570 133 ADPKARTIESINLNGKDR------------FVVYHTEDNGYKPYKLE--VF-EDNLYFSTYRTNNILKINKFGNSD 193 (713)
Q Consensus 133 ~d~~~~~I~~~~~~g~~~------------~~~~~~~~~~~~p~~i~--~~-~~~ly~td~~~~~i~~~~~~~~~~ 193 (713)
+-...+.|...++..... ..+............++ .+ ++.++++-...+.|..++...+..
T Consensus 246 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 246 SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred EEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 444567777777644322 22221111111222333 33 144555555667788887765543
|
| >1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0057 Score=48.90 Aligned_cols=73 Identities=21% Similarity=0.505 Sum_probs=50.7
Q ss_pred CCCCCCCeEecCCCCcceeecCCCccc--CCCCcC--CCCC---CCCCCCCeecCCCCccCCCCCceeeCCCCc-----c
Q psy6570 597 NYCDNAGLCSYSKQGKPVCTCVNGWSG--ITCSER--VSCA---HFCFNGGTCREQNYSLDPDLKPICICPRGY-----A 664 (713)
Q Consensus 597 ~~C~~~g~C~~~~~g~~~C~C~~G~~G--~~C~~~--~~C~---~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy-----~ 664 (713)
..|..++.|.....+...|+|.+||.| ..|... ..|. ..|..++.|.....- .......|.|.+|| .
T Consensus 10 ~~C~~NA~C~r~~~g~e~C~C~~gy~gdg~~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~-~~~~ki~C~C~~g~~~~~~~ 88 (99)
T 1ob1_C 10 KQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSG-SNGKKITCECTKPDSYPLFD 88 (99)
T ss_dssp CCCCTTEEEECCTTSCCEEEECTTEEEETTEEEECSCCCSTTGGGGCCTTEEEECCSCS-SSSCCCEEEECSTTCCEEGG
T ss_pred CCCCCCCCeEEcCCCCEEEEecCCeecCCCeEeeCCCCChhhcCCCcCCCceeEecCCc-ccCCceEeEeCCCCccccee
Confidence 457788999887779999999999985 467765 3575 237777888762100 00144799999996 4
Q ss_pred cCCCCc
Q psy6570 665 GVRCQT 670 (713)
Q Consensus 665 G~~C~~ 670 (713)
|..|+.
T Consensus 89 gvf~~~ 94 (99)
T 1ob1_C 89 GIFCSH 94 (99)
T ss_dssp GTEECC
T ss_pred EEEecc
Confidence 666653
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.12 Score=55.03 Aligned_cols=156 Identities=11% Similarity=0.101 Sum_probs=95.4
Q ss_pred CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEc-CC-CCCcceEEEcCCCCcEEEEccCCCCeEEEEecC
Q psy6570 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLN-TG-LNEPYDIALEPLSGRMFWTELGIKPRISGASID 103 (713)
Q Consensus 26 ~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~-~~-~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~d 103 (713)
.....|++.|....|..+-. ..+.|.+.+++......++. .+ .....+|++.|.++.++++-.... .|..-++.
T Consensus 120 ~~V~~l~~~P~~~~~lasGs---~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~-~v~iwd~~ 195 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGS---KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG-TTRLQDFK 195 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEE---TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS-CEEEEETT
T ss_pred CCEEEEEEeCCCCCEEEEEe---CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC-EEEEeecc
Confidence 34678899886666655554 56789999887654433332 22 356789999987777777664444 67778888
Q ss_pred CCCcEEEEeCC--CCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeee--CCeEEEEeCC
Q psy6570 104 GKNKFNLVDNN--IQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF--EDNLYFSTYR 179 (713)
Q Consensus 104 G~~~~~l~~~~--~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~--~~~ly~td~~ 179 (713)
+...+++.... ......|++++....|+.+ ...+.|...++++.....+... .....+|++. +..++++...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~~dg~i~~wd~~~~~~~~~~~h---~~~v~~v~~~p~~~~~~~s~s~ 271 (435)
T 4e54_B 196 GNILRVFASSDTINIWFCSLDVSASSRMVVTG-DNVGNVILLNMDGKELWNLRMH---KKKVTHVALNPCCDWFLATASV 271 (435)
T ss_dssp SCEEEEEECCSSCSCCCCCEEEETTTTEEEEE-CSSSBEEEEESSSCBCCCSBCC---SSCEEEEEECTTCSSEEEEEET
T ss_pred CCceeEEeccCCCCccEEEEEECCCCCEEEEE-eCCCcEeeeccCcceeEEEecc---cceEEeeeecCCCceEEEEecC
Confidence 76655555322 2234678999766555544 4567888888887644332211 1223445553 4456666555
Q ss_pred CCcEEEEccc
Q psy6570 180 TNNILKINKF 189 (713)
Q Consensus 180 ~~~i~~~~~~ 189 (713)
.+.|..++..
T Consensus 272 d~~v~iwd~~ 281 (435)
T 4e54_B 272 DQTVKIWDLR 281 (435)
T ss_dssp TSBCCEEETT
T ss_pred cceeeEEecc
Confidence 5555555543
|
| >1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.002 Score=48.81 Aligned_cols=34 Identities=12% Similarity=0.313 Sum_probs=27.1
Q ss_pred CccCCCCCCCCCCCCeeeccCC-CceeeeCCCCcc
Q psy6570 218 NVTNHCDDKPCHQSALCINLPS-SHTCLCPDHLTE 251 (713)
Q Consensus 218 ~~~~~C~~~~C~~~~~C~~~~g-~~~C~C~~G~~~ 251 (713)
..+|+|..++-+..+.|+++++ +|+|.|++||..
T Consensus 3 ~d~~eC~~~nggC~h~C~n~~g~s~~C~C~~Gy~L 37 (69)
T 1kli_L 3 DDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSL 37 (69)
T ss_dssp SCCCCTTSGGGGCSSEEEEETTTEEEEECCTTEEE
T ss_pred cccccccCCCCCcCCEeEcCCCCCEEEeCCCCCeE
Confidence 3578998653222899999999 899999999984
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.38 Score=53.18 Aligned_cols=184 Identities=8% Similarity=-0.080 Sum_probs=101.7
Q ss_pred CCceeEEEccCc----c-cEEecCC-CC-CceEEEec--cCCeEEEeecCCCCCCeEEEEecCCc--------eEEEEEc
Q psy6570 6 SGNVTRVKREMN----L-KTVLSNL-HD-PRGVAVDW--VGKNLYWTDAGGRSSNNIMVSTLEGR--------KKRTLLN 68 (713)
Q Consensus 6 ~~~I~~~~~~~~----~-~~~~~~~-~~-p~gla~D~--~~~~ly~td~~~~~~~~I~~~~~~G~--------~~~~l~~ 68 (713)
.+.|...++... . ...+... .. +..|++.+ .+..|+.+. ..+.|.+.+++.. .....+.
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~----~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 113 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD----ESGKVIVWGWTFDKESNSVEVNVKSEFQ 113 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEE----TTSEEEEEEEEEEGGGTEEEEEEEEEEE
T ss_pred CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEec----CCCEEEEEeCCCCcccccccccccchhh
Confidence 455666666643 2 2223332 33 57899998 666665544 3678888887421 1222222
Q ss_pred CCCCCcceEEEcCCCCcEEEEccCCC--CeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCC
Q psy6570 69 TGLNEPYDIALEPLSGRMFWTELGIK--PRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLN 146 (713)
Q Consensus 69 ~~~~~p~~iavD~~~~~ly~td~~~~--~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~ 146 (713)
........|++.|...+|+....... ..|+..+ .......+.........|++.+.+..++++-...+.|...++.
T Consensus 114 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~ 191 (615)
T 1pgu_A 114 VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP 191 (615)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT
T ss_pred cccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCC
Confidence 23456889999987777776654321 2444444 2222222233445678899998776566666667788888875
Q ss_pred CCceeEEEecCCCCc---cceeeeee-C-CeEEEEeCCCCcEEEEcccCCCcceee
Q psy6570 147 GKDRFVVYHTEDNGY---KPYKLEVF-E-DNLYFSTYRTNNILKINKFGNSDFNVL 197 (713)
Q Consensus 147 g~~~~~~~~~~~~~~---~p~~i~~~-~-~~ly~td~~~~~i~~~~~~~~~~~~~~ 197 (713)
.......+... .. ....+++. + +.++++-...+.|..++...+.....+
T Consensus 192 ~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 245 (615)
T 1pgu_A 192 PFKFSASDRTH--HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI 245 (615)
T ss_dssp TBEEEEEECSS--SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred Ccceeeeeccc--CCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence 54333222221 11 23455554 2 445555455677777776555444333
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.45 Score=48.65 Aligned_cols=181 Identities=8% Similarity=0.013 Sum_probs=97.1
Q ss_pred cCCceeEEEccCcc-cEE--ec-CCCCCceEEEecc--CCeEEEeecCCCCCCeEEEEecCCce--EEEEEcCCCCCcce
Q psy6570 5 SSGNVTRVKREMNL-KTV--LS-NLHDPRGVAVDWV--GKNLYWTDAGGRSSNNIMVSTLEGRK--KRTLLNTGLNEPYD 76 (713)
Q Consensus 5 ~~~~I~~~~~~~~~-~~~--~~-~~~~p~gla~D~~--~~~ly~td~~~~~~~~I~~~~~~G~~--~~~l~~~~~~~p~~ 76 (713)
.++.|...++.... +.+ +. .......|++.+. +..|+.+ . ..+.|.+.+++... ...........+..
T Consensus 31 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~---~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~ 106 (379)
T 3jrp_A 31 SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC-S---YDGKVLIWKEENGRWSQIAVHAVHSASVNS 106 (379)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE-E---TTSCEEEEEEETTEEEEEEEECCCSSCEEE
T ss_pred CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEe-c---cCCEEEEEEcCCCceeEeeeecCCCcceEE
Confidence 35666666665322 111 22 2234566777644 4455544 4 46788888887654 22223233456888
Q ss_pred EEEcCC--CCcEEEEccCCCCeEEEEecCCC--CcEEEEeCCCCCCeeEEEeCC------------CCeEEEEcCCCCcE
Q psy6570 77 IALEPL--SGRMFWTELGIKPRISGASIDGK--NKFNLVDNNIQWPTGITIDYP------------SQRLYWADPKARTI 140 (713)
Q Consensus 77 iavD~~--~~~ly~td~~~~~~I~~~~~dG~--~~~~l~~~~~~~p~glavd~~------------~~~LY~~d~~~~~I 140 (713)
|++.|. ...|+.+. ... .|...++... .....+.........|++++. ++.++++-...+.|
T Consensus 107 ~~~~~~~~~~~l~~~~-~d~-~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 184 (379)
T 3jrp_A 107 VQWAPHEYGPLLLVAS-SDG-KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 184 (379)
T ss_dssp EEECCGGGCSEEEEEE-TTS-EEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCE
T ss_pred EEeCCCCCCCEEEEec-CCC-cEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeE
Confidence 999986 44454444 333 6777777654 233334444556688999874 34444554455677
Q ss_pred EEEeCCCCce--eEEEecCCCCccceeeeeeC----CeEEEEeCCCCcEEEEcccCC
Q psy6570 141 ESINLNGKDR--FVVYHTEDNGYKPYKLEVFE----DNLYFSTYRTNNILKINKFGN 191 (713)
Q Consensus 141 ~~~~~~g~~~--~~~~~~~~~~~~p~~i~~~~----~~ly~td~~~~~i~~~~~~~~ 191 (713)
...++..... ..+............+++.. +.++++-...+.|..++...+
T Consensus 185 ~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 185 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred EEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 7777653322 22222211122334555542 455555556667776665543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.046 Score=65.62 Aligned_cols=139 Identities=12% Similarity=0.146 Sum_probs=89.7
Q ss_pred ceEEEeccCCeEEEeecCCCCCCeEE-EEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCc
Q psy6570 29 RGVAVDWVGKNLYWTDAGGRSSNNIM-VSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNK 107 (713)
Q Consensus 29 ~gla~D~~~~~ly~td~~~~~~~~I~-~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~ 107 (713)
..+++. .++.|+++.. ...|+ +.++++...+.+. .....+..+++.|..++|+++... . .|++.++++...
T Consensus 341 ~~~~~s-dg~~l~~~s~----~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~~-~-~v~~~d~~tg~~ 412 (1045)
T 1k32_A 341 VRRGGD-TKVAFIHGTR----EGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVANDR-F-EIMTVDLETGKP 412 (1045)
T ss_dssp EEECSS-SEEEEEEEET----TEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEETT-S-EEEEEETTTCCE
T ss_pred EeeeEc-CCCeEEEEEC----CCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEEECCC-C-eEEEEECCCCce
Confidence 345554 3445555443 35788 8888877665555 334678899999877778776543 3 799999987766
Q ss_pred EEEEeCCCCCCeeEEEeCCCCeEEEEcCC---------CCcEEEEeCCCCceeEEEecCCCCccceeeee--eCCeEEEE
Q psy6570 108 FNLVDNNIQWPTGITIDYPSQRLYWADPK---------ARTIESINLNGKDRFVVYHTEDNGYKPYKLEV--FEDNLYFS 176 (713)
Q Consensus 108 ~~l~~~~~~~p~glavd~~~~~LY~~d~~---------~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~--~~~~ly~t 176 (713)
+.++.........+++++++.+|.++... ...|+..++++.....+... ......+++ ++.+||++
T Consensus 413 ~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~---~~~~~~~~~spdG~~l~~~ 489 (1045)
T 1k32_A 413 TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE---NSHDYAPAFDADSKNLYYL 489 (1045)
T ss_dssp EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCS---SSBEEEEEECTTSCEEEEE
T ss_pred EEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCC---CcccCCceEcCCCCEEEEE
Confidence 66664444455889999998888887542 25799999887653333222 222333443 45678877
Q ss_pred eC
Q psy6570 177 TY 178 (713)
Q Consensus 177 d~ 178 (713)
..
T Consensus 490 s~ 491 (1045)
T 1k32_A 490 SY 491 (1045)
T ss_dssp ES
T ss_pred ec
Confidence 54
|
| >1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0011 Score=60.48 Aligned_cols=38 Identities=24% Similarity=0.777 Sum_probs=27.5
Q ss_pred CCCCCCCCCcEeccCCCCccccCCCCCcCCCCc-cCCCC
Q psy6570 418 CLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQ-YSQCK 455 (713)
Q Consensus 418 C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~C~-~~~C~ 455 (713)
|.+.+|.++++|.+..++|.|.|++||.|..|+ +++|.
T Consensus 122 c~~~~C~~~g~C~~~~~~~~c~C~~g~~G~~Ce~~~~c~ 160 (162)
T 1g1s_A 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDD 160 (162)
T ss_dssp CCTTGGGGSEEEEECSSSEEEEECTTEESTTSCEECC--
T ss_pred CcCCCCCCCCEEecCCCCceEeCCCCCcCcccccCcccC
Confidence 445667777888888888888888888888887 45554
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.1 Score=52.82 Aligned_cols=171 Identities=11% Similarity=-0.034 Sum_probs=94.0
Q ss_pred cCCceeEEEccCcc-----cEEecCCCCCceEEEeccCC-eEEEeecCCCCCCeEEEEec-CCceEEEEEcC-CCCCcce
Q psy6570 5 SSGNVTRVKREMNL-----KTVLSNLHDPRGVAVDWVGK-NLYWTDAGGRSSNNIMVSTL-EGRKKRTLLNT-GLNEPYD 76 (713)
Q Consensus 5 ~~~~I~~~~~~~~~-----~~~~~~~~~p~gla~D~~~~-~ly~td~~~~~~~~I~~~~~-~G~~~~~l~~~-~~~~p~~ 76 (713)
.++.|...++.... ..+......+..|++.+.+. .|+.+. ..+.|.+.++ ++.....+... .......
T Consensus 31 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~ 106 (342)
T 1yfq_A 31 WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT----VQGEILKVDLIGSPSFQALTNNEANLGICR 106 (342)
T ss_dssp TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE----TTSCEEEECSSSSSSEEECBSCCCCSCEEE
T ss_pred CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEc----CCCeEEEEEeccCCceEeccccCCCCceEE
Confidence 35666666665433 22233445568899988766 566554 3678999998 77655444320 3356788
Q ss_pred EEEcCCCCcEEEEccCCCCeEEEEecCC---------CCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC
Q psy6570 77 IALEPLSGRMFWTELGIKPRISGASIDG---------KNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNG 147 (713)
Q Consensus 77 iavD~~~~~ly~td~~~~~~I~~~~~dG---------~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g 147 (713)
|++.+ .+.|+... ... .|...++.. ......+. .-..+..|++++.. |+++ ...+.|...++..
T Consensus 107 l~~~~-~~~l~s~~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~-~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 107 ICKYG-DDKLIAAS-WDG-LIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVG-MNNSQVQWFRLPL 179 (342)
T ss_dssp EEEET-TTEEEEEE-TTS-EEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEE-ESTTEEEEEESSC
T ss_pred EEeCC-CCEEEEEc-CCC-eEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEE-eCCCeEEEEECCc
Confidence 99998 55554444 333 677766553 11111111 23356778888543 5554 3456788888765
Q ss_pred -Cce--eEEEecCCCCccceeeeeeC--CeEEEEeCCCCcEEEEcc
Q psy6570 148 -KDR--FVVYHTEDNGYKPYKLEVFE--DNLYFSTYRTNNILKINK 188 (713)
Q Consensus 148 -~~~--~~~~~~~~~~~~p~~i~~~~--~~ly~td~~~~~i~~~~~ 188 (713)
... ...... .......+++.. +.++++....+.|...+.
T Consensus 180 ~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~ 223 (342)
T 1yfq_A 180 CEDDNGTIEESG--LKYQIRDVALLPKEQEGYACSSIDGRVAVEFF 223 (342)
T ss_dssp CTTCCCEEEECS--CSSCEEEEEECSGGGCEEEEEETTSEEEEEEC
T ss_pred cccccceeeecC--CCCceeEEEECCCCCCEEEEEecCCcEEEEEE
Confidence 322 222211 122345555542 445555555566665443
|
| >2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0035 Score=47.78 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=27.5
Q ss_pred ccCCCCC--CCCCCCCeeeccCCCceeee-CCCCccc
Q psy6570 219 VTNHCDD--KPCHQSALCINLPSSHTCLC-PDHLTEE 252 (713)
Q Consensus 219 ~~~~C~~--~~C~~~~~C~~~~g~~~C~C-~~G~~~~ 252 (713)
.+|||.. ++|..++.|+|++|+|+|.+ +.||.++
T Consensus 2 DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~~ 38 (71)
T 2kl7_A 2 DVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVIND 38 (71)
T ss_dssp CSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCSC
T ss_pred ccccccCCCCCCCCCCEeECCCCCeEecccCCccccc
Confidence 4789976 47988899999999999984 4577754
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.24 Score=56.40 Aligned_cols=182 Identities=10% Similarity=0.046 Sum_probs=105.7
Q ss_pred CCceeEEEccCcc-cEEecCCC-------CCceEEEeccCCeEEEeec-CCCCCCeEEEEecCCceEEEEEcCCCCC--c
Q psy6570 6 SGNVTRVKREMNL-KTVLSNLH-------DPRGVAVDWVGKNLYWTDA-GGRSSNNIMVSTLEGRKKRTLLNTGLNE--P 74 (713)
Q Consensus 6 ~~~I~~~~~~~~~-~~~~~~~~-------~p~gla~D~~~~~ly~td~-~~~~~~~I~~~~~~G~~~~~l~~~~~~~--p 74 (713)
...|++++..+.. ++++.... ...++++.+.++.|.++-. +......|.+.++++..... ...+.. .
T Consensus 93 ~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~ 170 (695)
T 2bkl_A 93 KAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKY 170 (695)
T ss_dssp SCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTT
T ss_pred EEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccc
Confidence 3557888765543 44432111 2567888888887766543 22224689999998765320 111122 2
Q ss_pred ceEEEcCCCCcEEEEccCC-----------CCeEEEEecCCCCc--EEEEeCC--CCCCeeEEEeCCCCeEEEEcC---C
Q psy6570 75 YDIALEPLSGRMFWTELGI-----------KPRISGASIDGKNK--FNLVDNN--IQWPTGITIDYPSQRLYWADP---K 136 (713)
Q Consensus 75 ~~iavD~~~~~ly~td~~~-----------~~~I~~~~~dG~~~--~~l~~~~--~~~p~glavd~~~~~LY~~d~---~ 136 (713)
.+++..|.+..||++.... ..+|++.++.+... +.+.... ...-.++++++++++|+++.. .
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 250 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS 250 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence 6789988777788875421 23599998876542 2333321 124468899998888887653 3
Q ss_pred CCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEeC---CCCcEEEEcccCCC
Q psy6570 137 ARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTY---RTNNILKINKFGNS 192 (713)
Q Consensus 137 ~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~---~~~~i~~~~~~~~~ 192 (713)
...|+.++..+...+.+.........+ +..+++ ||+... ...+|++++..++.
T Consensus 251 ~~~l~~~~~~~~~~~~l~~~~~~~~~~--~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 251 ENDVYWKRPGEKDFRLLVKGVGAKYEV--HAWKDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp EEEEEEECTTCSSCEEEEECSSCCEEE--EEETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred ceEEEEEcCCCCceEEeecCCCceEEE--EecCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 457888877555555554432222222 223455 766543 35778888875543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=96.03 E-value=0.089 Score=60.43 Aligned_cols=117 Identities=14% Similarity=0.146 Sum_probs=67.3
Q ss_pred cceEEEcCCCCcE-EEEccCC-CCeEEEEecCCCC-------cEEEE-eCCCCC-----CeeEEEeCCCCeEE-EEc--C
Q psy6570 74 PYDIALEPLSGRM-FWTELGI-KPRISGASIDGKN-------KFNLV-DNNIQW-----PTGITIDYPSQRLY-WAD--P 135 (713)
Q Consensus 74 p~~iavD~~~~~l-y~td~~~-~~~I~~~~~dG~~-------~~~l~-~~~~~~-----p~glavd~~~~~LY-~~d--~ 135 (713)
...++..|..+.| +++.... ...|+..++++.. .++++ ...-.+ +..+++.+++++|+ |.. .
T Consensus 262 ~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~ 341 (740)
T 4a5s_A 262 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEE 341 (740)
T ss_dssp EEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTT
T ss_pred EEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCC
Confidence 3456676654433 3444332 2368888877654 23332 222111 45788998888776 653 3
Q ss_pred CCCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEeCC------CCcEEEEcccCCC
Q psy6570 136 KARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYR------TNNILKINKFGNS 192 (713)
Q Consensus 136 ~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~------~~~i~~~~~~~~~ 192 (713)
+...|+.++++|...+.|....-....+.+ ++++.||++... ...|++++..++.
T Consensus 342 G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~--~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~ 402 (740)
T 4a5s_A 342 GYRHICYFQIDKKDCTFITKGTWEVIGIEA--LTSDYLYYISNEYKGMPGGRNLYKIQLIDYT 402 (740)
T ss_dssp SCEEEEEEETTCSSCEESCCSSSCEEEEEE--ECSSEEEEEESCGGGCTTCBEEEEEETTEEE
T ss_pred CceEEEEEECCCCceEecccCCEEEEEEEE--EeCCEEEEEEecCCCCCceeEEEEEECCCCC
Confidence 456799999998876665543221222222 447788887654 2457777765543
|
| >1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0023 Score=58.28 Aligned_cols=36 Identities=31% Similarity=0.816 Sum_probs=21.7
Q ss_pred CCCCCCCCCCcEEeecCCCceeeCCCCCcCCCCCcC
Q psy6570 554 KCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTER 589 (713)
Q Consensus 554 ~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~ 589 (713)
+|.+.+|.++++|.+..++|+|.|++||+|..|+..
T Consensus 121 ~c~~~~C~~~g~C~~~~~~~~c~C~~g~~G~~Ce~~ 156 (162)
T 1g1s_A 121 SCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYV 156 (162)
T ss_dssp CCCTTGGGGSEEEEECSSSEEEEECTTEESTTSCEE
T ss_pred CCcCCCCCCCCEEecCCCCceEeCCCCCcCcccccC
Confidence 344555655666666666666666666666666554
|
| >2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0043 Score=56.22 Aligned_cols=38 Identities=26% Similarity=0.694 Sum_probs=22.8
Q ss_pred cCCccccCCCCCCCCCCceeeCCCCCCCCCceeeCCCCcccCCCCc
Q psy6570 339 GTYCEKVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCES 384 (713)
Q Consensus 339 G~~C~~~~c~~~~C~~~~~C~~~~~~~~~~~~C~C~~G~~g~~C~~ 384 (713)
.+.|....|.. +|.++|.|... .+|.|++||+|..|+.
T Consensus 143 ~K~C~~~~C~~-~C~ngG~Cv~P-------~~C~C~~Gw~G~~C~~ 180 (188)
T 2ygo_A 143 FKTCQQAECPG-GCRNGGFCNER-------RICECPDGFHGPHCEG 180 (188)
T ss_dssp EEEECCCCCTT-CCCTTCEECTT-------SCEECCTTCBTTTTCB
T ss_pred cccccCCccCC-CCCCCCEeCCC-------CcccCcCCCCCCCCcC
Confidence 34566666653 66666666543 2566666666666654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.18 Score=51.41 Aligned_cols=117 Identities=8% Similarity=-0.004 Sum_probs=74.6
Q ss_pred CCCceEEEeccC---CeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEec
Q psy6570 26 HDPRGVAVDWVG---KNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASI 102 (713)
Q Consensus 26 ~~p~gla~D~~~---~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~ 102 (713)
.....+++.+.. +.++++-. ..+.|.+.+++.......+......+..|++.|.++.++++-.... .|...++
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg-~i~iwd~ 145 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAG---SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH-ALRLWNI 145 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEE---TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTS-CEEEEET
T ss_pred CcEEEEEeccCCCCCCCEEEEec---CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCC-eEEEEEe
Confidence 346778887763 23444544 4688999998754443334334467889999985566655544433 6888888
Q ss_pred CCCCcEEEE---eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC
Q psy6570 103 DGKNKFNLV---DNNIQWPTGITIDYPSQRLYWADPKARTIESINLNG 147 (713)
Q Consensus 103 dG~~~~~l~---~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g 147 (713)
........+ .........|++++....|+.+. ..+.|...++..
T Consensus 146 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~ 192 (366)
T 3k26_A 146 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG-MDHSLKLWRINS 192 (366)
T ss_dssp TTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEESCS
T ss_pred ecCeEEEEecccccccCceeEEEECCCCCEEEEec-CCCCEEEEECCC
Confidence 755444444 23445678899998766666554 456788877764
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.53 Score=47.17 Aligned_cols=180 Identities=8% Similarity=-0.043 Sum_probs=91.6
Q ss_pred cCCceeEEEccCcc---cEE---ecCCCCCceEEEecc-CCeEEEeecCCCCCCeEEEEecCCce---------EEEEEc
Q psy6570 5 SSGNVTRVKREMNL---KTV---LSNLHDPRGVAVDWV-GKNLYWTDAGGRSSNNIMVSTLEGRK---------KRTLLN 68 (713)
Q Consensus 5 ~~~~I~~~~~~~~~---~~~---~~~~~~p~gla~D~~-~~~ly~td~~~~~~~~I~~~~~~G~~---------~~~l~~ 68 (713)
.++.|...++.... +.+ ......+..|++.+. .+.++++-. ..+.|.+.+++... ....+.
T Consensus 31 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 107 (351)
T 3f3f_A 31 SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS---YDKTVKLWEEDPDQEECSGRRWNKLCTLN 107 (351)
T ss_dssp TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE---TTSCEEEEEECTTSCTTSSCSEEEEEEEC
T ss_pred CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEc---CCCeEEEEecCCCcccccccCcceeeeec
Confidence 35666666766432 111 223344677888764 244444544 46788888887642 122232
Q ss_pred CCCCCcceEEEcCC--CCcEEEEccCCCCeEEEEecCCCC-cEEEE-----e-------CCCCCCeeEEEeCC---CCeE
Q psy6570 69 TGLNEPYDIALEPL--SGRMFWTELGIKPRISGASIDGKN-KFNLV-----D-------NNIQWPTGITIDYP---SQRL 130 (713)
Q Consensus 69 ~~~~~p~~iavD~~--~~~ly~td~~~~~~I~~~~~dG~~-~~~l~-----~-------~~~~~p~glavd~~---~~~L 130 (713)
........|++.|. ...|+.+. ... .|...++.... ...+. . ........+++.+. ...|
T Consensus 108 ~~~~~v~~~~~~~~~~~~~l~~~~-~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 185 (351)
T 3f3f_A 108 DSKGSLYSVKFAPAHLGLKLACLG-NDG-ILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKL 185 (351)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEE-TTC-EEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEE
T ss_pred ccCCceeEEEEcCCCCCcEEEEec-CCC-cEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEE
Confidence 33456788999986 44444443 323 67777654332 11111 0 12345577888875 5555
Q ss_pred EEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeeeCC-----eEEEEeCCCCcEEEEcccC
Q psy6570 131 YWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFED-----NLYFSTYRTNNILKINKFG 190 (713)
Q Consensus 131 Y~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~-----~ly~td~~~~~i~~~~~~~ 190 (713)
.++... +.|............+............+++..+ .++++-...+.|..++...
T Consensus 186 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 186 AVSALE-QAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp EEEETT-EEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred EEecCC-CcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence 555443 3343333333333223222111223345565533 5666666667777776554
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.55 Score=46.45 Aligned_cols=156 Identities=12% Similarity=0.028 Sum_probs=83.3
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCc
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNK 107 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~ 107 (713)
...|++ .++.|+.+. ..+.|.+.+ .++....+. ........+++.+.++.++++-.... .|...+. ++..
T Consensus 107 i~~~~~--~~~~l~~~~----~d~~i~~~d-~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~i~d~-~~~~ 176 (313)
T 3odt_A 107 VCSLSF--QDGVVISGS----WDKTAKVWK-EGSLVYNLQ-AHNASVWDAKVVSFSENKFLTASADK-TIKLWQN-DKVI 176 (313)
T ss_dssp EEEEEE--ETTEEEEEE----TTSEEEEEE-TTEEEEEEE-CCSSCEEEEEEEETTTTEEEEEETTS-CEEEEET-TEEE
T ss_pred EEEEEe--cCCEEEEEe----CCCCEEEEc-CCcEEEecc-cCCCceeEEEEccCCCCEEEEEECCC-CEEEEec-CceE
Confidence 455555 344554443 467888888 444443333 33456778888774555555443333 5666662 2222
Q ss_pred EEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEeCCCCcEEEEc
Q psy6570 108 FNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKIN 187 (713)
Q Consensus 108 ~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~~~ 187 (713)
..+..........+++.+.+. +++-...+.|...++........... .......+++..+..+++-...+.|..++
T Consensus 177 ~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~dg~v~iwd 252 (313)
T 3odt_A 177 KTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGDVLRTYEG--HESFVYCIKLLPNGDIVSCGEDRTVRIWS 252 (313)
T ss_dssp EEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEECTTSCEEEEETTSEEEEEC
T ss_pred EEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCchhhhhhhhc--CCceEEEEEEecCCCEEEEecCCEEEEEE
Confidence 222222444567889986544 44545667888888864433322222 12234556665332344445667777777
Q ss_pred ccCCCcceee
Q psy6570 188 KFGNSDFNVL 197 (713)
Q Consensus 188 ~~~~~~~~~~ 197 (713)
...+.....+
T Consensus 253 ~~~~~~~~~~ 262 (313)
T 3odt_A 253 KENGSLKQVI 262 (313)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCceeEEE
Confidence 6555444444
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.95 Score=46.66 Aligned_cols=135 Identities=13% Similarity=0.130 Sum_probs=75.2
Q ss_pred CCeEEEeecCCCCCCeEEEEecC-CceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEe-CC
Q psy6570 37 GKNLYWTDAGGRSSNNIMVSTLE-GRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVD-NN 114 (713)
Q Consensus 37 ~~~ly~td~~~~~~~~I~~~~~~-G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~-~~ 114 (713)
++.||+... .+.|..+++. |+.+- ...+..+..++++ ++.||+++.. . .|+.+++.....+-... ..
T Consensus 239 ~~~v~~~~~----~g~l~~~d~~tG~~~w---~~~~~~~~~~~~~--~~~l~~~~~~-g-~l~~~d~~tG~~~w~~~~~~ 307 (376)
T 3q7m_A 239 NGVVFALAY----NGNLTALDLRSGQIMW---KRELGSVNDFIVD--GNRIYLVDQN-D-RVMALTIDGGVTLWTQSDLL 307 (376)
T ss_dssp TTEEEEECT----TSCEEEEETTTCCEEE---EECCCCEEEEEEE--TTEEEEEETT-C-CEEEEETTTCCEEEEECTTT
T ss_pred CCEEEEEec----CcEEEEEECCCCcEEe---eccCCCCCCceEE--CCEEEEEcCC-C-eEEEEECCCCcEEEeecccC
Confidence 577777654 4678888874 44332 2223456677776 6889998753 2 68888875333221111 11
Q ss_pred CCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEeCCCCcEEEEc
Q psy6570 115 IQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKIN 187 (713)
Q Consensus 115 ~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~~~ 187 (713)
......+++. +++||+.+. .+.|+.++.............. ........+.++.||+... .+.|+.++
T Consensus 308 ~~~~~~~~~~--~~~l~v~~~-~g~l~~~d~~tG~~~~~~~~~~-~~~~~~~~~~~~~l~v~~~-~G~l~~~~ 375 (376)
T 3q7m_A 308 HRLLTSPVLY--NGNLVVGDS-EGYLHWINVEDGRFVAQQKVDS-SGFQTEPVAADGKLLIQAK-DGTVYSIT 375 (376)
T ss_dssp TSCCCCCEEE--TTEEEEECT-TSEEEEEETTTCCEEEEEECCT-TCBCSCCEEETTEEEEEBT-TSCEEEEE
T ss_pred CCcccCCEEE--CCEEEEEeC-CCeEEEEECCCCcEEEEEecCC-CcceeCCEEECCEEEEEeC-CCEEEEEe
Confidence 2223445555 688998874 4678888864433222221101 1111233456888988764 45677664
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.54 Score=44.28 Aligned_cols=150 Identities=10% Similarity=0.011 Sum_probs=89.9
Q ss_pred CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCC-------ceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCe
Q psy6570 24 NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEG-------RKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPR 96 (713)
Q Consensus 24 ~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G-------~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~ 96 (713)
+..+...||+++ ++.||.. . .+.+++.+... ...+.|-..+.+.-..|.+|+ +|.||.+.. ++
T Consensus 39 gw~~~~~laf~P-~G~LYaV-~----~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav~d---G~ 108 (236)
T 1tl2_A 39 GWSNFKFLFLSP-GGELYGV-L----NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAVSK---DK 108 (236)
T ss_dssp SCTTCSEEEECT-TSCEEEE-E----TTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEEET---TE
T ss_pred ccccceeEEECC-CccEEEE-e----CCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEeCC---CE
Confidence 467888999999 7899998 4 35788888743 223444444445567899995 899999832 48
Q ss_pred EEEEec--CCCCc-----EEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCC-CC------ceeEEEecCCCCcc
Q psy6570 97 ISGASI--DGKNK-----FNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLN-GK------DRFVVYHTEDNGYK 162 (713)
Q Consensus 97 I~~~~~--dG~~~-----~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~-g~------~~~~~~~~~~~~~~ 162 (713)
|+|.+. ++... .+|....-..-..|+++| ++.||-+. .+++++-..- +. ..+.+....- ...
T Consensus 109 iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~-~~y 184 (236)
T 1tl2_A 109 LYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW-DTF 184 (236)
T ss_dssp EEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG-GGE
T ss_pred EEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc-ceE
Confidence 999876 33321 222232333447788884 68899887 5557664432 21 1122221111 112
Q ss_pred ceeeeeeCCeEEEEeCCCCcEEEEccc
Q psy6570 163 PYKLEVFEDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 163 p~~i~~~~~~ly~td~~~~~i~~~~~~ 189 (713)
++-+...++.||+++ .+++++....
T Consensus 185 r~l~f~~~G~l~~v~--~g~~Y~~~~p 209 (236)
T 1tl2_A 185 KFLFFSSVGTLFGVQ--GGKFYEDYPP 209 (236)
T ss_dssp EEEEECTTSCEEEEE--TTEEEEESCC
T ss_pred EEEEECCCCcEEEEe--CCeEEecCCc
Confidence 221212266788887 6678877554
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.056 Score=59.42 Aligned_cols=110 Identities=14% Similarity=0.126 Sum_probs=71.6
Q ss_pred cCCCCCceEEEeccCCeEEEeecCCC------------------CCCeEEEEecCCce--------EEEEEc--------
Q psy6570 23 SNLHDPRGVAVDWVGKNLYWTDAGGR------------------SSNNIMVSTLEGRK--------KRTLLN-------- 68 (713)
Q Consensus 23 ~~~~~p~gla~D~~~~~ly~td~~~~------------------~~~~I~~~~~~G~~--------~~~l~~-------- 68 (713)
+.+.+|++|++++.++.||++-.++. ..+.|+++.+++.. ...++.
T Consensus 381 T~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~ 460 (592)
T 3zwu_A 381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG 460 (592)
T ss_dssp CCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred EEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccc
Confidence 46788999999999999999866431 13579988765432 111211
Q ss_pred ------------CCCCCcceEEEcCCCCcEEE-EccC-----------CCCeEEEEecCCCCcEEEEeC-CCCCCeeEEE
Q psy6570 69 ------------TGLNEPYDIALEPLSGRMFW-TELG-----------IKPRISGASIDGKNKFNLVDN-NIQWPTGITI 123 (713)
Q Consensus 69 ------------~~~~~p~~iavD~~~~~ly~-td~~-----------~~~~I~~~~~dG~~~~~l~~~-~~~~p~glav 123 (713)
..+..|-.|+||+. |+||+ +|.+ ++ .++....+....+.++.. .-.-..|+++
T Consensus 461 ~~~~~~~~~~~~~~f~~PDNL~fd~~-G~LwI~eDg~~~~~~~~~~~gnn-~~~~~~~~~g~~~rf~~~P~gaE~TG~~f 538 (592)
T 3zwu_A 461 TPKGGSSNITPQNMFNSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNN-QMLCADPATGEIRRFMVGPIGCEVTGISF 538 (592)
T ss_dssp SGGGCCTTCCTTTCCCCEEEEEECTT-CCEEEEECCCCCCSGGGTTTCSC-EEEEECTTTCCEEEEEECCTTCEEEEEEE
T ss_pred cccccccccCCCCCccCCcceEECCC-CCEEEEecCCCcccccccccccc-eEEEEeCCCCeEEEEEeCCCCccCcCeeE
Confidence 12667999999985 55665 4532 23 566666654444444432 2345689999
Q ss_pred eCCCCeEEEEc
Q psy6570 124 DYPSQRLYWAD 134 (713)
Q Consensus 124 d~~~~~LY~~d 134 (713)
.++.+.||+.-
T Consensus 539 spDg~tlfvni 549 (592)
T 3zwu_A 539 SPDQKTLFVGI 549 (592)
T ss_dssp CTTSSEEEEEE
T ss_pred CCCCCEEEEEE
Confidence 99888899874
|
| >4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0025 Score=65.75 Aligned_cols=24 Identities=25% Similarity=0.725 Sum_probs=20.1
Q ss_pred ee-cCCCCccCCCCCCccccCCCCCCcccCCCCccCCC
Q psy6570 471 KC-MCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKK 507 (713)
Q Consensus 471 ~C-~C~~G~~g~~C~~~~C~~~~~~~~C~C~~G~~g~~ 507 (713)
+| .|.+||+|..|+. |.+||+|..
T Consensus 335 ~C~~C~~n~~G~~Ce~-------------C~~Gyyg~~ 359 (375)
T 4aqt_A 335 HCTNCRDNTDGAKCER-------------CRENFFRLG 359 (375)
T ss_dssp EECSCTTTEESTTSCE-------------ECSSEECCT
T ss_pred CCCCCCCCCcCCCCCC-------------CCcCcccCc
Confidence 67 5999999999985 889998864
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.37 Score=48.83 Aligned_cols=176 Identities=8% Similarity=-0.073 Sum_probs=92.1
Q ss_pred CCceeEEEccCcccE-E--ecCCCCCceEEEeccC---CeEEEeecCCCCCCeEEEEecCCce-EEEEEcCCCCCcceEE
Q psy6570 6 SGNVTRVKREMNLKT-V--LSNLHDPRGVAVDWVG---KNLYWTDAGGRSSNNIMVSTLEGRK-KRTLLNTGLNEPYDIA 78 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~-~--~~~~~~p~gla~D~~~---~~ly~td~~~~~~~~I~~~~~~G~~-~~~l~~~~~~~p~~ia 78 (713)
++.|...++.+.... + .........+++.+.. ..|+.. . ..+.|.+.+++... ....+.........|+
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~-~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 118 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATG-D---FGGNLHIWNLEAPEMPVYSVKGHKEIINAID 118 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE-E---TTSCEEEECTTSCSSCSEEECCCSSCEEEEE
T ss_pred CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEe-c---CCCeEEEEeCCCCCccEEEEEecccceEEEe
Confidence 567777777654322 1 2333456778887763 445544 4 46788888887544 2222323234455664
Q ss_pred ------EcCCCCcEEEEccCCCCeEEEEecCCCC-cEEEEeCC----CCCCeeEE----EeCCCCeEEEEcCCCCcEEEE
Q psy6570 79 ------LEPLSGRMFWTELGIKPRISGASIDGKN-KFNLVDNN----IQWPTGIT----IDYPSQRLYWADPKARTIESI 143 (713)
Q Consensus 79 ------vD~~~~~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~----~~~p~gla----vd~~~~~LY~~d~~~~~I~~~ 143 (713)
+.+....|+... ... .|...++.... ....+... ......++ +++....|+ +-...+.|...
T Consensus 119 ~~~~~~~s~~~~~l~~~~-~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~~d~~i~i~ 195 (357)
T 3i2n_A 119 GIGGLGIGEGAPEIVTGS-RDG-TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVC-AGYDNGDIKLF 195 (357)
T ss_dssp EESGGGCC-CCCEEEEEE-TTS-CEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEE-EEETTSEEEEE
T ss_pred eccccccCCCccEEEEEe-CCC-eEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEE-EEccCCeEEEE
Confidence 344444444443 323 67777776543 22333211 11345566 444444444 44456788888
Q ss_pred eCCCCceeEEEecCCCCccceeeeee----CCeEEEEeCCCCcEEEEcccCC
Q psy6570 144 NLNGKDRFVVYHTEDNGYKPYKLEVF----EDNLYFSTYRTNNILKINKFGN 191 (713)
Q Consensus 144 ~~~g~~~~~~~~~~~~~~~p~~i~~~----~~~ly~td~~~~~i~~~~~~~~ 191 (713)
++........... ......+++. .+.++++....+.|..++...+
T Consensus 196 d~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 244 (357)
T 3i2n_A 196 DLRNMALRWETNI---KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ 244 (357)
T ss_dssp ETTTTEEEEEEEC---SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred ECccCceeeecCC---CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence 8877655333322 2234455554 3444455455667777665443
|
| >2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0081 Score=62.24 Aligned_cols=27 Identities=30% Similarity=0.819 Sum_probs=22.2
Q ss_pred CCeec-CCCCccCCCCCCccccCCCCCCcccCCCCccCCCC
Q psy6570 469 GPKCM-CSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKC 508 (713)
Q Consensus 469 ~~~C~-C~~G~~g~~C~~~~C~~~~~~~~C~C~~G~~g~~C 508 (713)
+.+|. |..++.|..|+. |.+||+|+..
T Consensus 356 ~G~C~~C~~nt~G~~CEr-------------C~~GYyg~p~ 383 (403)
T 2y38_A 356 GGVCLDCQHHTTGINCER-------------CLPGFFRAPD 383 (403)
T ss_dssp CEEESSCCSSEESTTSCE-------------ECTTCEECTT
T ss_pred CCCCCCCcCcCcCCCCCc-------------CCCCccCCCC
Confidence 34885 999999999985 8899998654
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.88 Score=46.20 Aligned_cols=138 Identities=12% Similarity=0.027 Sum_probs=79.3
Q ss_pred CCceeEEEccCcccEE-ec-CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCC
Q psy6570 6 SGNVTRVKREMNLKTV-LS-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLS 83 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~-~~-~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~ 83 (713)
++.|...++.....+. +. .......|++.+.+ .++++-. ..+.|.+.++........+......+..|++.|..
T Consensus 163 d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sg~---~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~ 238 (340)
T 1got_B 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGA---CDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238 (340)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEE---TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS
T ss_pred CCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC-CEEEEEe---CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCC
Confidence 4556666655432221 22 23446788888754 4555555 56789999986544433343334568899999854
Q ss_pred CcEEEEccCCCCeEEEEecCCCCcEEEEeC-C-CCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCce
Q psy6570 84 GRMFWTELGIKPRISGASIDGKNKFNLVDN-N-IQWPTGITIDYPSQRLYWADPKARTIESINLNGKDR 150 (713)
Q Consensus 84 ~~ly~td~~~~~~I~~~~~dG~~~~~l~~~-~-~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~ 150 (713)
. ++++-.... .|...++........+.. . ......|++++.+..|..+ ...+.|...++.....
T Consensus 239 ~-~l~s~s~d~-~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~d~~i~vwd~~~~~~ 304 (340)
T 1got_B 239 N-AFATGSDDA-TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG-YDDFNCNVWDALKADR 304 (340)
T ss_dssp S-EEEEEETTS-CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCE
T ss_pred C-EEEEEcCCC-cEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEE-CCCCeEEEEEcccCcE
Confidence 4 444443333 677777765433222221 1 2245788999766555544 4567788888754433
|
| >3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0018 Score=47.05 Aligned_cols=31 Identities=32% Similarity=0.845 Sum_probs=26.3
Q ss_pred CCCCCcEEcC----CCCCeeccCCCCCCCCCCccc
Q psy6570 512 TCLNGGTCIP----NSKNNVCKCPSQYTGRRCECA 542 (713)
Q Consensus 512 ~C~~~g~C~~----~~~~~~C~C~~g~~G~~C~~~ 542 (713)
+|.|+|+|.. ....+.|.|++||+|.+||..
T Consensus 15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~~ 49 (58)
T 3ltf_D 15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49 (58)
T ss_dssp TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCEE
T ss_pred cCCCCCEEeCCccCCCCCEEeECCCCCccCCCccc
Confidence 7999999983 334789999999999999865
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=95.75 E-value=1.3 Score=45.67 Aligned_cols=157 Identities=10% Similarity=0.066 Sum_probs=88.4
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecC-C-ceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCC
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE-G-RKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGK 105 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~-G-~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~ 105 (713)
...+++.+.++.++++-. ..+.|.+.++. + .....+. ........|++.|. +.++++-.... .|...++...
T Consensus 208 v~~~~~~~~~~~~l~sgs---~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~~p~-~~~l~s~s~D~-~i~lwd~~~~ 281 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGS---CDTTVRLWDLRITSRAVRTYH-GHEGDINSVKFFPD-GQRFGTGSDDG-TCRLFDMRTG 281 (380)
T ss_dssp EEEEEECSSSCCEEEEEE---TTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEECTT-SSEEEEECSSS-CEEEEETTTT
T ss_pred eEEEEeecCCCCEEEEEE---CCCeEEEEECCCCCcceEEEC-CcCCCeEEEEEecC-CCeEEEEcCCC-eEEEEECCCC
Confidence 455667665677777766 67889898875 2 3333332 33356789999974 55555554433 6777777654
Q ss_pred CcEEEEeCC-------CCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecC-C-CCccceeeeee-CCeEEE
Q psy6570 106 NKFNLVDNN-------IQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTE-D-NGYKPYKLEVF-EDNLYF 175 (713)
Q Consensus 106 ~~~~l~~~~-------~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~-~-~~~~p~~i~~~-~~~ly~ 175 (713)
.....+... ......+++++.+..|+ +-...+.|+..++............ . .......|++. ++.+++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 360 (380)
T 3iz6_a 282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLF-AGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALC 360 (380)
T ss_dssp EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEE-EECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEE
T ss_pred cEEEEecccccccccccCceEEEEECCCCCEEE-EEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEE
Confidence 433333211 12357899997665555 4455678888887544332222110 1 11122445554 344555
Q ss_pred EeCCCCcEEEEcccCC
Q psy6570 176 STYRTNNILKINKFGN 191 (713)
Q Consensus 176 td~~~~~i~~~~~~~~ 191 (713)
+-...+.|...+..+.
T Consensus 361 sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 361 TGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EECTTSCEEEEECCSS
T ss_pred EeeCCCCEEEEecCCC
Confidence 6556667766665443
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.46 Score=54.40 Aligned_cols=181 Identities=8% Similarity=0.058 Sum_probs=103.6
Q ss_pred CceeEEEcc---C-cccEEecC--CC-----CCceEEEeccCCeEEEeec-CCCCCCeEEEEecCCceEEEEEcCCCCCc
Q psy6570 7 GNVTRVKRE---M-NLKTVLSN--LH-----DPRGVAVDWVGKNLYWTDA-GGRSSNNIMVSTLEGRKKRTLLNTGLNEP 74 (713)
Q Consensus 7 ~~I~~~~~~---~-~~~~~~~~--~~-----~p~gla~D~~~~~ly~td~-~~~~~~~I~~~~~~G~~~~~l~~~~~~~p 74 (713)
..|++++.. + ..++++.. +. ...++++.+.++.|.++-. +......|.+.++++.......... ...
T Consensus 133 ~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~-~~~ 211 (741)
T 1yr2_A 133 SQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKW-VKF 211 (741)
T ss_dssp CEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEE-EES
T ss_pred EEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCC-cee
Confidence 566777765 3 33443221 11 3456788888877766543 1111246999999876544332111 112
Q ss_pred ceEEEcCCCCcEEEEccCC------------CCeEEEEecCCCCc--EEEEeCCC--CCCeeEEEeCCCCeEEEEcC---
Q psy6570 75 YDIALEPLSGRMFWTELGI------------KPRISGASIDGKNK--FNLVDNNI--QWPTGITIDYPSQRLYWADP--- 135 (713)
Q Consensus 75 ~~iavD~~~~~ly~td~~~------------~~~I~~~~~dG~~~--~~l~~~~~--~~p~glavd~~~~~LY~~d~--- 135 (713)
.+++..|. +.||++.... ..+|++.++.+... +.+..... ..-.++++++++++|+++-.
T Consensus 212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 290 (741)
T 1yr2_A 212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT 290 (741)
T ss_dssp CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence 46888877 7787765321 22588888764432 23333211 13468899988888877653
Q ss_pred -CCCcEEEEeCCCC--c-eeEEEecCCCCccceeeeeeCCeEEEEeCC---CCcEEEEcccCC
Q psy6570 136 -KARTIESINLNGK--D-RFVVYHTEDNGYKPYKLEVFEDNLYFSTYR---TNNILKINKFGN 191 (713)
Q Consensus 136 -~~~~I~~~~~~g~--~-~~~~~~~~~~~~~p~~i~~~~~~ly~td~~---~~~i~~~~~~~~ 191 (713)
....|+.+++++. . .+.+.........+ +..++++||+.... ..+|++++..++
T Consensus 291 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~--~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 291 DPVNTVHVARVTNGKIGPVTALIPDLKAQWDF--VDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp CSCCEEEEEEEETTEECCCEEEECSSSSCEEE--EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred CCcceEEEEECCCCCCcccEEecCCCCceEEE--EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 3568999998765 3 44444332212222 34567788776432 456888876553
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.21 Score=50.45 Aligned_cols=178 Identities=8% Similarity=-0.036 Sum_probs=95.2
Q ss_pred cCCceeEEEc-cCcccEEec---CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCC---------ceEEEEEcCCC
Q psy6570 5 SSGNVTRVKR-EMNLKTVLS---NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEG---------RKKRTLLNTGL 71 (713)
Q Consensus 5 ~~~~I~~~~~-~~~~~~~~~---~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G---------~~~~~l~~~~~ 71 (713)
.++.|...++ .+.....+. ....+..|++.+ .+.|+ +-. ..+.|.+.++.. ......+. ..
T Consensus 77 ~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~-s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~ 150 (342)
T 1yfq_A 77 VQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLI-AAS---WDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VK 150 (342)
T ss_dssp TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEE-EEE---TTSEEEEECHHHHTTBCEEEEESCSSSSS-SC
T ss_pred CCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEE-EEc---CCCeEEEEcccccccccccccCCeeeEEe-eC
Confidence 4567777777 654433333 334467888887 55555 444 467888888653 11111111 22
Q ss_pred CCcceEEEcCCCCcEEEEccCCCCeEEEEecCC-CC--cEEEEeCCCCCCeeEEEeC-CCCeEEEEcCCCCcEEEEeCCC
Q psy6570 72 NEPYDIALEPLSGRMFWTELGIKPRISGASIDG-KN--KFNLVDNNIQWPTGITIDY-PSQRLYWADPKARTIESINLNG 147 (713)
Q Consensus 72 ~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG-~~--~~~l~~~~~~~p~glavd~-~~~~LY~~d~~~~~I~~~~~~g 147 (713)
..+..|++++.. |+.... .. .|...++.. .. ........-..+..|++++ ....|+.+. ..+.|...+++.
T Consensus 151 ~~v~~~~~~~~~--l~~~~~-d~-~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~dg~i~i~~~~~ 225 (342)
T 1yfq_A 151 NKIFTMDTNSSR--LIVGMN-NS-QVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS-IDGRVAVEFFDD 225 (342)
T ss_dssp CCEEEEEECSSE--EEEEES-TT-EEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-TTSEEEEEECCT
T ss_pred CceEEEEecCCc--EEEEeC-CC-eEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe-cCCcEEEEEEcC
Confidence 457788888643 555443 23 688888776 22 2223333344578899997 665555544 456666655544
Q ss_pred C-------ceeEEEecCCC------Cccceeeeee-CCeEEEEeCCCCcEEEEcccCCCc
Q psy6570 148 K-------DRFVVYHTEDN------GYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSD 193 (713)
Q Consensus 148 ~-------~~~~~~~~~~~------~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~ 193 (713)
. ....+...... ......+++. .+.++++....+.|..++...+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285 (342)
T ss_dssp TCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred CCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhH
Confidence 3 22333222110 1133455554 233444444566777777654443
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=95.69 E-value=1.4 Score=45.65 Aligned_cols=155 Identities=13% Similarity=0.026 Sum_probs=88.8
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCc
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNK 107 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~ 107 (713)
...|++.+.+..|+.. . ..+.|.+.++........+.........|++.|...+|+.+. ... .|..-++.....
T Consensus 126 v~~v~~s~dg~~l~s~-~---~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s-~d~-~v~iwd~~~~~~ 199 (393)
T 1erj_A 126 IRSVCFSPDGKFLATG-A---EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS-GDR-TVRIWDLRTGQC 199 (393)
T ss_dssp EEEEEECTTSSEEEEE-E---TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTS-EEEEEETTTTEE
T ss_pred EEEEEECCCCCEEEEE-c---CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEec-CCC-cEEEEECCCCee
Confidence 4578888765555544 3 467899999876655444444445678899998665555443 333 677777765433
Q ss_pred EEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEec-----CCCCccceeeeee-CCeEEEEeCCCC
Q psy6570 108 FNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHT-----EDNGYKPYKLEVF-EDNLYFSTYRTN 181 (713)
Q Consensus 108 ~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~-----~~~~~~p~~i~~~-~~~ly~td~~~~ 181 (713)
...+. .......+++.+.+++++++-...+.|...++........... .........+++. ++.++++....+
T Consensus 200 ~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~ 278 (393)
T 1erj_A 200 SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 278 (393)
T ss_dssp EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 33332 2334678889885666666666667788888754432222111 0011223455554 344445555566
Q ss_pred cEEEEccc
Q psy6570 182 NILKINKF 189 (713)
Q Consensus 182 ~i~~~~~~ 189 (713)
.|...+..
T Consensus 279 ~v~~wd~~ 286 (393)
T 1erj_A 279 SVKLWNLQ 286 (393)
T ss_dssp EEEEEEC-
T ss_pred EEEEEECC
Confidence 67666654
|
| >1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0071 Score=43.11 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=20.8
Q ss_pred CCCCCCcEEeecCCCceeeCCCCCcC
Q psy6570 558 NYCSNNGTCVLIEGKPSCKCLPPYSG 583 (713)
Q Consensus 558 ~~C~~~~~C~~~~g~~~C~C~~G~~G 583 (713)
.+|. +.|+++.|+|+|.|++||.+
T Consensus 20 ~~C~--~~C~n~~Gsy~C~C~~Gy~~ 43 (53)
T 1apq_A 20 PQCQ--HLCHNYVGGYFCSCRPGYEL 43 (53)
T ss_dssp CTTS--SEEEEETTEEEEECSTTCEE
T ss_pred CCCC--CEeECCCCCeEEECCCCCeE
Confidence 4675 49999999999999999985
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=95.65 E-value=1.5 Score=45.11 Aligned_cols=103 Identities=11% Similarity=0.124 Sum_probs=61.1
Q ss_pred CCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 83 ~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
++.||+.... . .|..+++..... +....+..+.+++++ +++||++.. .+.|+.++.......-.... .....
T Consensus 239 ~~~v~~~~~~-g-~l~~~d~~tG~~--~w~~~~~~~~~~~~~--~~~l~~~~~-~g~l~~~d~~tG~~~w~~~~-~~~~~ 310 (376)
T 3q7m_A 239 NGVVFALAYN-G-NLTALDLRSGQI--MWKRELGSVNDFIVD--GNRIYLVDQ-NDRVMALTIDGGVTLWTQSD-LLHRL 310 (376)
T ss_dssp TTEEEEECTT-S-CEEEEETTTCCE--EEEECCCCEEEEEEE--TTEEEEEET-TCCEEEEETTTCCEEEEECT-TTTSC
T ss_pred CCEEEEEecC-c-EEEEEECCCCcE--EeeccCCCCCCceEE--CCEEEEEcC-CCeEEEEECCCCcEEEeecc-cCCCc
Confidence 5778887532 2 688887743222 222234456677777 789999874 46789998754433222221 11122
Q ss_pred ceeeeeeCCeEEEEeCCCCcEEEEcccCCCcc
Q psy6570 163 PYKLEVFEDNLYFSTYRTNNILKINKFGNSDF 194 (713)
Q Consensus 163 p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~ 194 (713)
.....+.++.||+.+. .+.|+.++...+...
T Consensus 311 ~~~~~~~~~~l~v~~~-~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 311 LTSPVLYNGNLVVGDS-EGYLHWINVEDGRFV 341 (376)
T ss_dssp CCCCEEETTEEEEECT-TSEEEEEETTTCCEE
T ss_pred ccCCEEECCEEEEEeC-CCeEEEEECCCCcEE
Confidence 3344566888888864 467888887665543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.2 Score=50.96 Aligned_cols=107 Identities=7% Similarity=-0.009 Sum_probs=62.6
Q ss_pred EeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcC---CCCcEEEEccCCCCeEEEEecCCCC-cE
Q psy6570 33 VDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEP---LSGRMFWTELGIKPRISGASIDGKN-KF 108 (713)
Q Consensus 33 ~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~---~~~~ly~td~~~~~~I~~~~~dG~~-~~ 108 (713)
+.+.+..|+ +-. ..+.|.+.++........... ...+..|+++| ..+.|+... ... .|...++.... ..
T Consensus 176 ~~~~~~~l~-~~~---~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~l~~~~-~dg-~i~i~d~~~~~~~~ 248 (357)
T 3i2n_A 176 YNQEERVVC-AGY---DNGDIKLFDLRNMALRWETNI-KNGVCSLEFDRKDISMNKLVATS-LEG-KFHVFDMRTQHPTK 248 (357)
T ss_dssp CC-CCCEEE-EEE---TTSEEEEEETTTTEEEEEEEC-SSCEEEEEESCSSSSCCEEEEEE-STT-EEEEEEEEEEETTT
T ss_pred cCCCCCEEE-EEc---cCCeEEEEECccCceeeecCC-CCceEEEEcCCCCCCCCEEEEEC-CCC-eEEEEeCcCCCccc
Confidence 334444444 444 467899999887665444322 35688999998 455555544 323 56666554322 21
Q ss_pred EEE----eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCC
Q psy6570 109 NLV----DNNIQWPTGITIDYPSQRLYWADPKARTIESINLN 146 (713)
Q Consensus 109 ~l~----~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~ 146 (713)
.+. .........|++++.+..++++-...+.|...++.
T Consensus 249 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 249 GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp EEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred ceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 221 23445678899997666466665566677666654
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.8 Score=46.03 Aligned_cols=138 Identities=14% Similarity=0.020 Sum_probs=81.0
Q ss_pred CCceeEEEccCccc--EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCC
Q psy6570 6 SGNVTRVKREMNLK--TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLS 83 (713)
Q Consensus 6 ~~~I~~~~~~~~~~--~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~ 83 (713)
++.|...++..... .+.........|++++.+..|+ +-. ..+.|.+.++++.....+.. .......+++.|..
T Consensus 86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s---~D~~i~vwd~~~~~~~~~~~-h~~~v~~~~~~~~~ 160 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII-SGS---RDKTIKVWTIKGQCLATLLG-HNDWVSQVRVVPNE 160 (319)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEE-EEE---TTSCEEEEETTSCEEEEECC-CSSCEEEEEECCC-
T ss_pred CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEE-EEe---CCCeEEEEECCCCeEEEEec-cCCcEEEEEEccCC
Confidence 45566666654332 2223344567888887655454 544 46789999998876655542 23456677776642
Q ss_pred -----CcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCce
Q psy6570 84 -----GRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDR 150 (713)
Q Consensus 84 -----~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~ 150 (713)
+.++++-.... .|..-++........+.........|++++.+.+|..+ ...+.|...++.....
T Consensus 161 ~~~~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~i~iwd~~~~~~ 230 (319)
T 3frx_A 161 KADDDSVTIISAGNDK-MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA-GKDGEIMLWNLAAKKA 230 (319)
T ss_dssp -----CCEEEEEETTS-CEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEE-ETTCEEEEEETTTTEE
T ss_pred CCCCCccEEEEEeCCC-EEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCcE
Confidence 33445443333 67777776543333333344556889999766555544 4557788888765443
|
| >3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0037 Score=45.44 Aligned_cols=31 Identities=29% Similarity=0.715 Sum_probs=24.9
Q ss_pred CCCCCcEEee----cCCCceeeCCCCCcCCCCCcC
Q psy6570 559 YCSNNGTCVL----IEGKPSCKCLPPYSGKQCTER 589 (713)
Q Consensus 559 ~C~~~~~C~~----~~g~~~C~C~~G~~G~~C~~~ 589 (713)
+|.++|+|.. ..+.|.|.|++||+|.+|+..
T Consensus 15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~~ 49 (58)
T 3ltf_D 15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49 (58)
T ss_dssp TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCEE
T ss_pred cCCCCCEEeCCccCCCCCEEeECCCCCccCCCccc
Confidence 7888999983 234688999999999999754
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=95.56 E-value=1.6 Score=45.04 Aligned_cols=160 Identities=8% Similarity=0.051 Sum_probs=90.3
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcC-----CCCCcceEEEcCCCCcEEEEccCCCCeEEEEec
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNT-----GLNEPYDIALEPLSGRMFWTELGIKPRISGASI 102 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~-----~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~ 102 (713)
...+++.+..+..+++-. ..+.|.+.++........+.. .......+++.+.++.++++-.... .|..-++
T Consensus 160 v~~~~~~~~~~~~l~s~s---~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~-~v~~wd~ 235 (380)
T 3iz6_a 160 ASSCQYVPDQETRLITGS---GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT-TVRLWDL 235 (380)
T ss_dssp CCCCBCCSSSSSCEEEEC---TTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS-CEEEEET
T ss_pred eEEEEEecCCCCEEEEEC---CCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC-eEEEEEC
Confidence 344555544444444544 567888888765544433321 1234567888877788888765544 6777776
Q ss_pred C-CCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCC-C----Cccceeeeee-CCeEEE
Q psy6570 103 D-GKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTED-N----GYKPYKLEVF-EDNLYF 175 (713)
Q Consensus 103 d-G~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~-~----~~~p~~i~~~-~~~ly~ 175 (713)
. .......+.......+.|++.|... ++++-...+.|...++.......+..... . ......+++. .+.+++
T Consensus 236 ~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 314 (380)
T 3iz6_a 236 RITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLF 314 (380)
T ss_dssp TTTCCCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEE
T ss_pred CCCCcceEEECCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEE
Confidence 5 2222233333445678899997654 44555567788888876544333322211 0 1112345554 445556
Q ss_pred EeCCCCcEEEEcccCCC
Q psy6570 176 STYRTNNILKINKFGNS 192 (713)
Q Consensus 176 td~~~~~i~~~~~~~~~ 192 (713)
+-...+.|+..+...+.
T Consensus 315 ~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 315 AGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp EECTTSCEEEEETTTCC
T ss_pred EEECCCCEEEEECCCCc
Confidence 66667778877754443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.51 E-value=1.4 Score=49.66 Aligned_cols=58 Identities=2% Similarity=-0.065 Sum_probs=29.5
Q ss_pred CcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEeCCCCcEEEEcccCCCcceee
Q psy6570 138 RTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVL 197 (713)
Q Consensus 138 ~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~ 197 (713)
+.|..+|+......--..... ......+...++.||+. ...+.|+.++..++..+..+
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~~~g~~v~~g-~~dg~l~a~D~~tG~~lw~~ 514 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQG-TADGRLVAYHAATGEKLWEA 514 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEEEE
T ss_pred cEEEEEeCCCCcEEeecCCCC-CCcCcceEeCCCEEEEE-CCCCcEEEEECCCCceeeee
Confidence 457777765433222222111 11112244456677776 45667777777666554444
|
| >2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0087 Score=54.20 Aligned_cols=39 Identities=41% Similarity=0.956 Sum_probs=31.9
Q ss_pred cCCCCcCCCCCCCCCCCCeecCCCCccCCCCCceeeCCCCcccCCCCcc
Q psy6570 623 GITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTL 671 (713)
Q Consensus 623 G~~C~~~~~C~~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~~ 671 (713)
.+.|.. ..|...|.|+|.|+.+ .+|.|++||+|..|++.
T Consensus 143 ~K~C~~-~~C~~~C~ngG~Cv~P---------~~C~C~~Gw~G~~C~~~ 181 (188)
T 2ygo_A 143 FKTCQQ-AECPGGCRNGGFCNER---------RICECPDGFHGPHCEGT 181 (188)
T ss_dssp EEEECC-CCCTTCCCTTCEECTT---------SCEECCTTCBTTTTCBC
T ss_pred cccccC-CccCCCCCCCCEeCCC---------CcccCcCCCCCCCCcCC
Confidence 345655 5688899999999873 58999999999999875
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=95.47 E-value=1.6 Score=45.94 Aligned_cols=177 Identities=12% Similarity=0.021 Sum_probs=91.0
Q ss_pred cCCceeEEEccCcccEE-ecC-CCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCC
Q psy6570 5 SSGNVTRVKREMNLKTV-LSN-LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPL 82 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~~~-~~~-~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~ 82 (713)
.++.|...++.+..... +.+ ......|++ .+ .++++-. ..+.|.+.+++.......+.........|+++
T Consensus 151 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~sg~---~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~-- 222 (435)
T 1p22_A 151 RDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DE-RVIITGS---SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN-- 222 (435)
T ss_dssp SSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CS-SEEEEEE---TTSCEEEEESSSCCEEEEECCCCSCEEEEECC--
T ss_pred CCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CC-CEEEEEc---CCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--
Confidence 35566666665433221 222 222344444 33 4444544 46789998887544433333333456667765
Q ss_pred CCcEEEEccCCCCeEEEEecCCCCcE---EEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCC
Q psy6570 83 SGRMFWTELGIKPRISGASIDGKNKF---NLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDN 159 (713)
Q Consensus 83 ~~~ly~td~~~~~~I~~~~~dG~~~~---~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 159 (713)
.+.|+... ... .|...++...... ..+.........|+++ ...|+.+. ..+.|...++........... .
T Consensus 223 ~~~l~s~s-~dg-~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~--~ 295 (435)
T 1p22_A 223 NGMMVTCS-KDR-SIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS-GDRTIKVWNTSTCEFVRTLNG--H 295 (435)
T ss_dssp TTEEEEEE-TTS-CEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEE-TTSEEEEEETTTCCEEEEEEC--C
T ss_pred CCEEEEee-CCC-cEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--CCEEEEEe-CCCeEEEEECCcCcEEEEEcC--C
Confidence 34444433 333 6777777654433 2222233345667775 55555554 467788888765433322222 1
Q ss_pred CccceeeeeeCCeEEEEeCCCCcEEEEcccCCCcceee
Q psy6570 160 GYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVL 197 (713)
Q Consensus 160 ~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~ 197 (713)
......+++.++ ++++-...+.|..++...+.....+
T Consensus 296 ~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~ 332 (435)
T 1p22_A 296 KRGIACLQYRDR-LVVSGSSDNTIRLWDIECGACLRVL 332 (435)
T ss_dssp SSCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CCcEEEEEeCCC-EEEEEeCCCeEEEEECCCCCEEEEE
Confidence 223345555544 4444456677777776655444433
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=95.44 E-value=2.3 Score=44.83 Aligned_cols=178 Identities=9% Similarity=0.032 Sum_probs=89.7
Q ss_pred CCceeEEEccCcccE--EecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCC
Q psy6570 6 SGNVTRVKREMNLKT--VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLS 83 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~--~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~ 83 (713)
++.|...++.....+ +.........+++ .++.|+.+. ..+.|.+.++........+.........|++| .
T Consensus 218 dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~ 289 (445)
T 2ovr_B 218 DATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGA----YDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--G 289 (445)
T ss_dssp TSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEE----TTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC--S
T ss_pred CCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEc----CCCEEEEEECCCCcEeEEecCCCCceEEEEEC--C
Confidence 455666665543221 1222233445555 344444443 35778888876544333333223445566663 3
Q ss_pred CcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCce-eEEEecCCCCcc
Q psy6570 84 GRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDR-FVVYHTEDNGYK 162 (713)
Q Consensus 84 ~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~-~~~~~~~~~~~~ 162 (713)
..|+... ... .|...++........+.........++++ .+.|+ +-...+.|...++..... ..+.........
T Consensus 290 ~~l~~~~-~d~-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 364 (445)
T 2ovr_B 290 IHVVSGS-LDT-SIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILV-SGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 364 (445)
T ss_dssp SEEEEEE-TTS-CEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEE-EEETTSCEEEEETTTCCEEEEECSTTSCSSC
T ss_pred CEEEEEe-CCC-eEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEE-EEeCCCeEEEEECCCCcEEEEEccCCCCCCC
Confidence 3444443 333 67777776544433333333445566665 44444 444567788888754333 333221111223
Q ss_pred ceeeeeeCCeEEEEeCCCCcEEEEcccCCCcceee
Q psy6570 163 PYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVL 197 (713)
Q Consensus 163 p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~ 197 (713)
...++++++ ++++....+.|..++...+.....+
T Consensus 365 v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 365 VTCLQFNKN-FVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp EEEEEECSS-EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEEEECCC-EEEEEeCCCeEEEEECCCCceeeee
Confidence 345666554 4445456677887876655544433
|
| >2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0057 Score=43.99 Aligned_cols=29 Identities=28% Similarity=0.666 Sum_probs=22.3
Q ss_pred CCCCCcEEeecCCCceeeCCCCCc----CCCCCcC
Q psy6570 559 YCSNNGTCVLIEGKPSCKCLPPYS----GKQCTER 589 (713)
Q Consensus 559 ~C~~~~~C~~~~g~~~C~C~~G~~----G~~C~~~ 589 (713)
.|+ ..|+|+.|+|+|.|++||. |..|.++
T Consensus 10 ~C~--~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~di 42 (55)
T 2jkh_L 10 DCD--QFCHEEQNSVVCSCARGYTLADNGKACIPT 42 (55)
T ss_dssp GCS--SEEEEETTEEEEECCTTEEECTTSSCEEES
T ss_pred CcC--cEeEcCCCCeEEeCCCCCEECCCCCeeccC
Confidence 464 3799999999999999986 5667665
|
| >1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.003 Score=61.70 Aligned_cols=37 Identities=19% Similarity=0.445 Sum_probs=29.3
Q ss_pred CccCCCC--CCCCCCCCeeeccCCCceeeeCCCCccccc
Q psy6570 218 NVTNHCD--DKPCHQSALCINLPSSHTCLCPDHLTEELN 254 (713)
Q Consensus 218 ~~~~~C~--~~~C~~~~~C~~~~g~~~C~C~~G~~~~~~ 254 (713)
..+|||. ..+|+.++.|+|++|+|.|.|++||.|+..
T Consensus 3 ~DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG~ 41 (285)
T 1gl4_A 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGR 41 (285)
T ss_dssp ----CHHHHGGGSCTTEEEEECSSCEEEEECTTEEECSS
T ss_pred ccchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCCCCC
Confidence 4678998 458999999999999999999999997654
|
| >1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0054 Score=43.31 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=20.6
Q ss_pred CCCCCCeeeccCCCceeeeCCCCcc
Q psy6570 227 PCHQSALCINLPSSHTCLCPDHLTE 251 (713)
Q Consensus 227 ~C~~~~~C~~~~g~~~C~C~~G~~~ 251 (713)
+| .+.|+|++|+|+|.|++||..
T Consensus 7 ~C--~~~C~n~~gs~~C~C~~Gy~L 29 (51)
T 1kig_L 7 GC--DQFCREERSEVRCSCAHGYVL 29 (51)
T ss_dssp SS--SSCCCEETTEECCCCCTTEEE
T ss_pred Cc--CCEeEcCCCCeEEeCCCCcEE
Confidence 56 689999999999999999983
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=2.3 Score=46.87 Aligned_cols=77 Identities=10% Similarity=-0.004 Sum_probs=43.2
Q ss_pred eeEEEeCCCCeEEEEcC------------------------------------CCCcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 119 TGITIDYPSQRLYWADP------------------------------------KARTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 119 ~glavd~~~~~LY~~d~------------------------------------~~~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
.++++|+.+++||+... ..+.|+.+++......--..... ...
T Consensus 389 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~ 467 (571)
T 2ad6_A 389 GVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAW 467 (571)
T ss_dssp CBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCC
T ss_pred CCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-Ccc
Confidence 46899999999999742 23567777764322221111111 111
Q ss_pred ceeeeeeCCeEEEEeCCCCcEEEEcccCCCcceee
Q psy6570 163 PYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVL 197 (713)
Q Consensus 163 p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~ 197 (713)
...+...++.||+.. ..+.|+.++...++.+..+
T Consensus 468 ~~~~~t~gg~v~~g~-~dg~l~a~D~~tG~~lw~~ 501 (571)
T 2ad6_A 468 GGTLYTKGGLVWYAT-LDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp SBCEEETTTEEEEEC-TTSEEEEEETTTCCEEEEE
T ss_pred ceeEEECCCEEEEEc-CCCeEEEEECCCCCEEEEE
Confidence 122344567788754 4567888887666554433
|
| >1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.025 Score=45.45 Aligned_cols=69 Identities=20% Similarity=0.427 Sum_probs=49.2
Q ss_pred CCCCCCCeEecCCCCcceeecCCCccc--CCCCcCCC-CC---CCCCCCCeecCCCCccCCCCCceeeCCCCc-----cc
Q psy6570 597 NYCDNAGLCSYSKQGKPVCTCVNGWSG--ITCSERVS-CA---HFCFNGGTCREQNYSLDPDLKPICICPRGY-----AG 665 (713)
Q Consensus 597 ~~C~~~g~C~~~~~g~~~C~C~~G~~G--~~C~~~~~-C~---~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy-----~G 665 (713)
..|..++.|....+|.-.|+|..||.+ ..|...++ |. .-|..++.|.. .....-.|.|.++| .|
T Consensus 16 t~Cp~NA~C~r~~~G~e~CrCl~gY~~dg~~Cv~~Np~C~~nNGGCd~nAeC~~-----~~~~ki~C~C~~~~~~~~~~G 90 (105)
T 1n1i_A 16 TNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTM-----DDKKEVECKCTKEGSEPLFEG 90 (105)
T ss_dssp SCCCTTEEEEECTTSCEEEEECTTEEECSSSEEECCCCTTSGGGGSCTTSEEEE-----CTTSCEEEECCSTTCCEEGGG
T ss_pred CCCCCCCCeEECCCCCEeEEEECCeeccCCEEEECCcchhhcCCCcCCCcEeEE-----CCCCEEEeECCCCCCccccce
Confidence 357788999987779999999999985 46776655 54 23666667765 22244789999985 46
Q ss_pred CCCCc
Q psy6570 666 VRCQT 670 (713)
Q Consensus 666 ~~C~~ 670 (713)
..|+.
T Consensus 91 vfC~~ 95 (105)
T 1n1i_A 91 VFCSS 95 (105)
T ss_dssp TEECC
T ss_pred EEECC
Confidence 66644
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=95.25 E-value=2.4 Score=42.82 Aligned_cols=152 Identities=12% Similarity=0.101 Sum_probs=83.3
Q ss_pred CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCce-EEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCC
Q psy6570 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK-KRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGK 105 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~-~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~ 105 (713)
....|++.+.+..|+ +-. ..+.|.+.++.... ...+. ........|++.|...+|+.... .. .|...++.+.
T Consensus 78 ~V~~~~~~~~~~~l~-s~s---~D~~v~lwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~~~-d~-~i~~wd~~~~ 150 (343)
T 2xzm_R 78 FVSDLALSQENCFAI-SSS---WDKTLRLWDLRTGTTYKRFV-GHQSEVYSVAFSPDNRQILSAGA-ER-EIKLWNILGE 150 (343)
T ss_dssp CEEEEEECSSTTEEE-EEE---TTSEEEEEETTSSCEEEEEE-CCCSCEEEEEECSSTTEEEEEET-TS-CEEEEESSSC
T ss_pred ceEEEEECCCCCEEE-EEc---CCCcEEEEECCCCcEEEEEc-CCCCcEEEEEECCCCCEEEEEcC-CC-EEEEEeccCC
Confidence 356788887654444 544 56789888886443 33333 33356788999986655554443 23 5777777643
Q ss_pred CcEEEEe--CCCCCCeeEEEeCCCC---------eEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeee-CCeE
Q psy6570 106 NKFNLVD--NNIQWPTGITIDYPSQ---------RLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF-EDNL 173 (713)
Q Consensus 106 ~~~~l~~--~~~~~p~glavd~~~~---------~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~-~~~l 173 (713)
....+.. ........+++.+... .++++-...+.|...+..+.....+... ......+++. ++.+
T Consensus 151 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h---~~~v~~~~~s~~g~~ 227 (343)
T 2xzm_R 151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAH---ESNVNHLSISPNGKY 227 (343)
T ss_dssp EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECC---SSCEEEEEECTTSSE
T ss_pred ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCc---cccceEEEECCCCCE
Confidence 3222211 1122345677776541 3444444567777777554333333221 1233455554 3445
Q ss_pred EEEeCCCCcEEEEcc
Q psy6570 174 YFSTYRTNNILKINK 188 (713)
Q Consensus 174 y~td~~~~~i~~~~~ 188 (713)
+++-...+.|...+.
T Consensus 228 l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 228 IATGGKDKKLLIWDI 242 (343)
T ss_dssp EEEEETTCEEEEEES
T ss_pred EEEEcCCCeEEEEEC
Confidence 555556667777765
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=95.25 E-value=2.9 Score=43.94 Aligned_cols=176 Identities=7% Similarity=-0.023 Sum_probs=93.7
Q ss_pred cCCceeEEEccCcccEE-ec-CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCC
Q psy6570 5 SSGNVTRVKREMNLKTV-LS-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPL 82 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~~~-~~-~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~ 82 (713)
.++.|...++....... +. .......++++ .+.| ++-. ..+.|.+.+++.......+.........|+++
T Consensus 137 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l-~s~~---~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-- 208 (445)
T 2ovr_B 137 DDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNII-ISGS---TDRTLKVWNAETGECIHTLYGHTSTVRCMHLH-- 208 (445)
T ss_dssp TTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEE-EEEE---TTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--
T ss_pred CCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEE-EEEe---CCCeEEEEECCcCcEEEEECCCCCcEEEEEec--
Confidence 35666666665433221 22 22334556665 3444 4444 46889999987654443343333556677776
Q ss_pred CCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 83 ~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
.+.|+... ... .|...++........+.........++++ +..|+.+. ..+.|...++........... ....
T Consensus 209 ~~~l~s~s-~dg-~i~~wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~--~~~~ 281 (445)
T 2ovr_B 209 EKRVVSGS-RDA-TLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGA-YDFMVKVWDPETETCLHTLQG--HTNR 281 (445)
T ss_dssp TTEEEEEE-TTS-EEEEEESSSCCEEEEEECCSSCEEEEEEC--SSCEEEEE-TTSCEEEEEGGGTEEEEEECC--CSSC
T ss_pred CCEEEEEe-CCC-EEEEEECCCCcEEEEEcCCcccEEEEEEC--CCEEEEEc-CCCEEEEEECCCCcEeEEecC--CCCc
Confidence 33444433 333 78888877555444444444555677774 44555444 466787777754432222221 1223
Q ss_pred ceeeeeeCCeEEEEeCCCCcEEEEcccCCCccee
Q psy6570 163 PYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNV 196 (713)
Q Consensus 163 p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~ 196 (713)
...+++++..|+ +....+.|..++...+.....
T Consensus 282 v~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~ 314 (445)
T 2ovr_B 282 VYSLQFDGIHVV-SGSLDTSIRVWDVETGNCIHT 314 (445)
T ss_dssp EEEEEECSSEEE-EEETTSCEEEEETTTCCEEEE
T ss_pred eEEEEECCCEEE-EEeCCCeEEEEECCCCCEEEE
Confidence 455666555444 444566777777655544333
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=95.24 E-value=2.7 Score=44.40 Aligned_cols=151 Identities=13% Similarity=0.050 Sum_probs=83.6
Q ss_pred EEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEE
Q psy6570 32 AVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLV 111 (713)
Q Consensus 32 a~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~ 111 (713)
++.+.++.|+... ..+.|.+.++........+.........+++++....|+... ... .|...++........+
T Consensus 275 ~~~~~~~~l~~~~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg-~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 275 TVSGHGNIVVSGS----YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-MDT-TIRIWDLENGELMYTL 348 (464)
T ss_dssp EEEEETTEEEEEE----TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-TTS-CEEEEETTTTEEEEEE
T ss_pred EEcCCCCEEEEEe----CCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCC-cEEEEECCCCcEEEEE
Confidence 3444455555544 367889999876544444433346678899998655555544 333 6888887644433333
Q ss_pred eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEeCCCCcEEEEcccCC
Q psy6570 112 DNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGN 191 (713)
Q Consensus 112 ~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~ 191 (713)
.........|+++ ..+|+ +-...+.|...++....+....... .......+..++..|.... .+.|..++...+
T Consensus 349 ~~h~~~v~~~~~~--~~~l~-s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~--dg~i~iwd~~~g 422 (464)
T 3v7d_B 349 QGHTALVGLLRLS--DKFLV-SAAADGSIRGWDANDYSRKFSYHHT-NLSAITTFYVSDNILVSGS--ENQFNIYNLRSG 422 (464)
T ss_dssp CCCSSCEEEEEEC--SSEEE-EEETTSEEEEEETTTCCEEEEEECT-TCCCEEEEEECSSEEEEEE--TTEEEEEETTTC
T ss_pred eCCCCcEEEEEEc--CCEEE-EEeCCCcEEEEECCCCceeeeecCC-CCccEEEEEeCCCEEEEec--CCeEEEEECCCC
Confidence 3344456677777 34444 4445677888888765443333221 1222233333344443333 567777776555
Q ss_pred Ccc
Q psy6570 192 SDF 194 (713)
Q Consensus 192 ~~~ 194 (713)
...
T Consensus 423 ~~~ 425 (464)
T 3v7d_B 423 KLV 425 (464)
T ss_dssp CEE
T ss_pred cEE
Confidence 443
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=95.24 E-value=2.4 Score=42.46 Aligned_cols=158 Identities=11% Similarity=0.079 Sum_probs=87.6
Q ss_pred CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCC
Q psy6570 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGK 105 (713)
Q Consensus 26 ~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~ 105 (713)
.....+++.+.+..|+ +-. ..+.|.+.++........+.........|++++... ++++-.... .|..-++.+.
T Consensus 66 ~~v~~~~~s~dg~~l~-s~s---~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~-~i~vwd~~~~ 139 (319)
T 3frx_A 66 HIVQDCTLTADGAYAL-SAS---WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDK-TIKVWTIKGQ 139 (319)
T ss_dssp SCEEEEEECTTSSEEE-EEE---TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC-EEEEEETTS-CEEEEETTSC
T ss_pred ccEEEEEECCCCCEEE-EEe---CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCC-eEEEEECCCC
Confidence 3456788887655555 444 468899999865443333333345678899997544 444443333 6777777765
Q ss_pred CcEEEEeCCCCCCeeEEEeCCC-----CeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeee-CCeEEEEeCC
Q psy6570 106 NKFNLVDNNIQWPTGITIDYPS-----QRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYR 179 (713)
Q Consensus 106 ~~~~l~~~~~~~p~glavd~~~-----~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~ 179 (713)
....+. ........+++.+.. +.++++-...+.|...++........+.. .......+++. ++.++++-..
T Consensus 140 ~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--h~~~v~~~~~sp~g~~l~s~~~ 216 (319)
T 3frx_A 140 CLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG--HNSNINTLTASPDGTLIASAGK 216 (319)
T ss_dssp EEEEEC-CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECC--CCSCEEEEEECTTSSEEEEEET
T ss_pred eEEEEe-ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecC--CCCcEEEEEEcCCCCEEEEEeC
Confidence 444443 233345667776532 23455555667777777765433222221 11223445554 3445555555
Q ss_pred CCcEEEEcccCCC
Q psy6570 180 TNNILKINKFGNS 192 (713)
Q Consensus 180 ~~~i~~~~~~~~~ 192 (713)
.+.|...+...+.
T Consensus 217 dg~i~iwd~~~~~ 229 (319)
T 3frx_A 217 DGEIMLWNLAAKK 229 (319)
T ss_dssp TCEEEEEETTTTE
T ss_pred CCeEEEEECCCCc
Confidence 6677777665443
|
| >2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.014 Score=44.34 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=26.4
Q ss_pred CCCCCC--CCCCCCcEEeecCCCceee-CCCCCcCC
Q psy6570 552 ANKCTP--NYCSNNGTCVLIEGKPSCK-CLPPYSGK 584 (713)
Q Consensus 552 ~~~C~~--~~C~~~~~C~~~~g~~~C~-C~~G~~G~ 584 (713)
+++|.. .+|..+++|+|+.|+|+|. +..||.+.
T Consensus 3 idEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~~ 38 (71)
T 2kl7_A 3 VNECLTIPEACKGEMKCINHYGGYLCLPRSAAVIND 38 (71)
T ss_dssp SCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCSC
T ss_pred cccccCCCCCCCCCCEeECCCCCeEecccCCccccc
Confidence 678864 5698889999999999997 55688743
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.89 Score=47.84 Aligned_cols=159 Identities=9% Similarity=0.005 Sum_probs=88.8
Q ss_pred CCCceEEEeccCCeEEEeecCCCCCCeEEEEecC-CceEEEEE-------cCCCCCcceEEEcCCCCcEEEEccCCCCeE
Q psy6570 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE-GRKKRTLL-------NTGLNEPYDIALEPLSGRMFWTELGIKPRI 97 (713)
Q Consensus 26 ~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~-G~~~~~l~-------~~~~~~p~~iavD~~~~~ly~td~~~~~~I 97 (713)
..+..|++.+.+..|+.+ . .+.|.+.+++ +.....++ ......+..|+++|....++++-.... .|
T Consensus 178 ~~v~~~~~~~~~~~l~s~-~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-~i 251 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA-D----DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG-TI 251 (447)
T ss_dssp SCCCEEEECTTSSEEEEE-C----SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS-CE
T ss_pred cceEEEEEcCCCCEEEEe-C----CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC-eE
Confidence 446789998865555433 3 5789999987 32222221 112345778999986635555543333 67
Q ss_pred EEEecCCCCc----EEEEeCCCC------------CCeeEEEeCCCCeEEEEcCCCCcEEEEeCC--CCceeEEEecCCC
Q psy6570 98 SGASIDGKNK----FNLVDNNIQ------------WPTGITIDYPSQRLYWADPKARTIESINLN--GKDRFVVYHTEDN 159 (713)
Q Consensus 98 ~~~~~dG~~~----~~l~~~~~~------------~p~glavd~~~~~LY~~d~~~~~I~~~~~~--g~~~~~~~~~~~~ 159 (713)
...++..... ...+..... ....|++++.+..|..+.. +.|...++. +.....+.....
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~- 328 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNMENRPVETYQVHEY- 328 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTCCSSCSCCEESCGG-
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCCCccccceeecccc-
Confidence 8877765443 333332222 5688999987666666554 888888875 333333322110
Q ss_pred Ccc-------------ceeeeee-CCeEEEEeCCCCcEEEEcccCCCc
Q psy6570 160 GYK-------------PYKLEVF-EDNLYFSTYRTNNILKINKFGNSD 193 (713)
Q Consensus 160 ~~~-------------p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~ 193 (713)
... .+.+++. ++.++++-...+.|..++...+..
T Consensus 329 ~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 329 LRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp GTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred ccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 000 1124443 233345555667777777655433
|
| >4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0064 Score=62.70 Aligned_cols=37 Identities=22% Similarity=0.584 Sum_probs=23.3
Q ss_pred CeecCCCCccCCCCCCccccCCCCCCcccCCCCccCCCCCCCCCCCCcEE
Q psy6570 470 PKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKKCDTCTCLNGGTC 519 (713)
Q Consensus 470 ~~C~C~~G~~g~~C~~~~C~~~~~~~~C~C~~G~~g~~C~~~~C~~~g~C 519 (713)
+.|.|.+||.|..|+. |.+||.|..|....+.+...|
T Consensus 272 ~~C~C~~nt~G~~Ce~-------------C~~gy~~~p~~~g~~~~~~~C 308 (375)
T 4aqt_A 272 LMCNCKHNTYGVDCEK-------------CLPFFNDRPWRRATAESASEC 308 (375)
T ss_dssp EEECCCTTEESTTSCE-------------ECTTCCSSCCCCCCSSCCCCC
T ss_pred eeeeCcCCCcCCCccc-------------CCCCCcCCCCCCCccCCCCCC
Confidence 4677777777777775 667777766554434333334
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=95.10 E-value=1.7 Score=43.41 Aligned_cols=122 Identities=7% Similarity=-0.028 Sum_probs=71.9
Q ss_pred CCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCce-----EEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEE
Q psy6570 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK-----KRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISG 99 (713)
Q Consensus 25 ~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~-----~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~ 99 (713)
-.....|++.+..+.++++-. ..+.|.+.+++... ....+......+..|++.|...+|+... ... .|..
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s---~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~-~d~-~i~~ 112 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSAS---RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS-WDG-TLRL 112 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEE---TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTS-EEEE
T ss_pred cCCEEEEEEeCCCCCEEEEEc---CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc-ccc-cceE
Confidence 344788999987777777766 56778877765422 1112222235678899997555555443 323 6777
Q ss_pred EecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeE
Q psy6570 100 ASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFV 152 (713)
Q Consensus 100 ~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~ 152 (713)
.+...................+.+.+....|+.+. ..+.|...++.+.....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~~~~~~d~~~~~~~~ 164 (340)
T 4aow_A 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS-RDKTIKLWNTLGVCKYT 164 (340)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEE-TTSCEEEECTTSCEEEE
T ss_pred EeecccceeeeecCCCCceeEEEEeecCccceeec-CCCeEEEEEeCCCceEE
Confidence 77666555544444455556666666555555443 44556666665544433
|
| >3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.015 Score=40.51 Aligned_cols=33 Identities=48% Similarity=1.167 Sum_probs=25.1
Q ss_pred CCCCCCCeecCCCCccCCCCCceeeCCCCcccCCCCcc
Q psy6570 634 HFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTL 671 (713)
Q Consensus 634 ~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~~ 671 (713)
..|.++ +|... .....+.|.|++||+|.+|+..
T Consensus 14 ~yC~nG-~C~~~----~~~~~~~C~C~~gy~G~RCe~~ 46 (50)
T 3e50_C 14 QFCFHG-TCRFL----VQEDKPACVCHSGYVGARCEHA 46 (50)
T ss_pred CcccCC-EEeec----cCCCCeEEECCCCCcccCCCce
Confidence 568875 99751 2234589999999999999874
|
| >1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A | Back alignment and structure |
|---|
Probab=95.06 E-value=0.0093 Score=41.68 Aligned_cols=34 Identities=38% Similarity=1.097 Sum_probs=25.6
Q ss_pred CCCCCCCeecCCCCccCCCCCceeeCCCCcccCCCCccc
Q psy6570 634 HFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTLV 672 (713)
Q Consensus 634 ~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~~~ 672 (713)
+.|.+ |+|.. +.....+.|.|++||+|.+||...
T Consensus 14 ~yC~n-G~C~~----~~~~~~~~C~C~~gy~G~RCe~~~ 47 (50)
T 1iox_A 14 HYCIK-GRCRF----VVAEQTPSCVCDEGYIGARCERVD 47 (50)
T ss_dssp TSCTT-CCEEE----ETTTTEEEECCCTTEETTTTCEEC
T ss_pred CcccC-CEEEe----EcCCCCeEEECCCCcccCCCCeec
Confidence 56888 78963 123345799999999999999754
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.06 E-value=1.8 Score=43.68 Aligned_cols=153 Identities=7% Similarity=-0.006 Sum_probs=87.7
Q ss_pred CCCCceEEEeccC--CeEEEeecCCCCCCeEEEEecCC--ceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEE
Q psy6570 25 LHDPRGVAVDWVG--KNLYWTDAGGRSSNNIMVSTLEG--RKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGA 100 (713)
Q Consensus 25 ~~~p~gla~D~~~--~~ly~td~~~~~~~~I~~~~~~G--~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~ 100 (713)
......|++.+.. +.++++-. ..+.|.+.+++. ......+.........|++.|...+|+... ... .|...
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg-~v~iw 113 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGS---WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS-CDK-TAKMW 113 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEE---TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE-TTS-EEEEE
T ss_pred CCceEEEEEcCCCCCceEEEEEC---CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc-CCC-cEEEE
Confidence 3456889998875 45555544 467888888874 333233333346788999998555555444 333 68888
Q ss_pred ecCCCCcEEEEeCCCCCCeeEEE--eCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEeC
Q psy6570 101 SIDGKNKFNLVDNNIQWPTGITI--DYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTY 178 (713)
Q Consensus 101 ~~dG~~~~~l~~~~~~~p~glav--d~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~ 178 (713)
+++......+.. .......|++ ++. +.++++-...+.|...++........... ......++.....++++..
T Consensus 114 d~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 188 (368)
T 3mmy_A 114 DLSSNQAIQIAQ-HDAPVKTIHWIKAPN-YSCVMTGSWDKTLKFWDTRSSNPMMVLQL---PERCYCADVIYPMAVVATA 188 (368)
T ss_dssp ETTTTEEEEEEE-CSSCEEEEEEEECSS-CEEEEEEETTSEEEEECSSCSSCSEEEEC---SSCEEEEEEETTEEEEEEG
T ss_pred EcCCCCceeecc-ccCceEEEEEEeCCC-CCEEEEccCCCcEEEEECCCCcEEEEEec---CCCceEEEecCCeeEEEeC
Confidence 887665544433 3445678888 644 44444544567788888755433333222 1234445555555544432
Q ss_pred CCCcEEEEcc
Q psy6570 179 RTNNILKINK 188 (713)
Q Consensus 179 ~~~~i~~~~~ 188 (713)
.+.+..++.
T Consensus 189 -~~~i~~~~~ 197 (368)
T 3mmy_A 189 -ERGLIVYQL 197 (368)
T ss_dssp -GGCEEEEEC
T ss_pred -CCcEEEEEe
Confidence 334444443
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.57 Score=53.20 Aligned_cols=146 Identities=14% Similarity=0.135 Sum_probs=85.2
Q ss_pred CceeEEEccCc---ccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceE---EEEEcCCCCCcceEEEc
Q psy6570 7 GNVTRVKREMN---LKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKK---RTLLNTGLNEPYDIALE 80 (713)
Q Consensus 7 ~~I~~~~~~~~---~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~---~~l~~~~~~~p~~iavD 80 (713)
..|+.+++++. .+.+......-... +++.++.||++-.......+|+++++++... +.++...-... .+.
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s 334 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVH 334 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEE
T ss_pred cEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEE
Confidence 46677776543 22333322222222 5666788877643211357899999987543 55554432222 455
Q ss_pred CCCCcEEEEccC-CCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcC---CCCcEEEEeCCCCceeEEEec
Q psy6570 81 PLSGRMFWTELG-IKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADP---KARTIESINLNGKDRFVVYHT 156 (713)
Q Consensus 81 ~~~~~ly~td~~-~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~---~~~~I~~~~~~g~~~~~~~~~ 156 (713)
+..+.|+++... ...+|++.+++|...+.+.........++++++.++.|+++-. ....|+.+++++...+++...
T Consensus 335 ~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~~~ 414 (693)
T 3iuj_A 335 SGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYRAS 414 (693)
T ss_dssp EETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEECC
T ss_pred EECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEEeC
Confidence 556777776433 2347999999987655543222223345666667777877642 346899999987766666543
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=95.02 E-value=1.1 Score=49.76 Aligned_cols=156 Identities=12% Similarity=-0.022 Sum_probs=83.3
Q ss_pred CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCC
Q psy6570 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKN 106 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~ 106 (713)
....++|.+.+..++++-. ..+.|.+.+.........+.........|++.|. +.++.+-.... .|..-++....
T Consensus 149 ~v~~v~f~p~~~~~l~s~s---~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspd-g~~las~s~D~-~i~lwd~~~g~ 223 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGS---DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDG-TIVLYNGVDGT 223 (611)
T ss_dssp CEEEEEECSSSSCEEEEEE---TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT-SSEEEEEETTS-CEEEEETTTCC
T ss_pred CceEEEECCCCCeEEEEEe---CCCeEEEEECCCCeEeeeeccccCceEEEEECCC-CCEEEEEECCC-cEEEEECCCCc
Confidence 3567888776655555655 5677888886543333333333456789999985 55555544433 67766654333
Q ss_pred cEEEE-e------CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCc-eeEEEecCCCCccceeeeeeCCeEEEEeC
Q psy6570 107 KFNLV-D------NNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKD-RFVVYHTEDNGYKPYKLEVFEDNLYFSTY 178 (713)
Q Consensus 107 ~~~l~-~------~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~-~~~~~~~~~~~~~p~~i~~~~~~ly~td~ 178 (713)
....+ . ........|++++.+.+|..+ ...+.|...++.... ...+...........++...+. .+++-.
T Consensus 224 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~-s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s 301 (611)
T 1nr0_A 224 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA-SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ-ALVSIS 301 (611)
T ss_dssp EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS-CEEEEE
T ss_pred EeeeeccccccccccCCCEEEEEECCCCCEEEEE-eCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCC-EEEEEe
Confidence 32222 1 123456789999866666544 455677777775433 2222211111112233444333 334434
Q ss_pred CCCcEEEEccc
Q psy6570 179 RTNNILKINKF 189 (713)
Q Consensus 179 ~~~~i~~~~~~ 189 (713)
..+.|..++..
T Consensus 302 ~d~~i~~~~~~ 312 (611)
T 1nr0_A 302 ANGFINFVNPE 312 (611)
T ss_dssp TTCCEEEEETT
T ss_pred CCCcEEEEeCC
Confidence 45555555543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=95.02 E-value=2.4 Score=44.54 Aligned_cols=170 Identities=8% Similarity=-0.037 Sum_probs=88.9
Q ss_pred cCCceeEEEccCcccEE-ec-CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEE---EEEcCCCCCcceEEE
Q psy6570 5 SSGNVTRVKREMNLKTV-LS-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKR---TLLNTGLNEPYDIAL 79 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~~~-~~-~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~---~l~~~~~~~p~~iav 79 (713)
.++.|...++.....+. +. .......|++ ..+.|+ +-. ..+.|.+.++...... ............|++
T Consensus 191 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~-s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 264 (435)
T 1p22_A 191 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMV-TCS---KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF 264 (435)
T ss_dssp TTSCEEEEESSSCCEEEEECCCCSCEEEEEC--CTTEEE-EEE---TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCcEEEEEE--cCCEEE-Eee---CCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe
Confidence 35666666766543221 21 2222344444 344444 444 4678888887654322 222222345566777
Q ss_pred cCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCC
Q psy6570 80 EPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDN 159 (713)
Q Consensus 80 D~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 159 (713)
| ...|+... ... .|...++........+.........++++ +..| ++-...+.|...++........... .
T Consensus 265 ~--~~~l~s~~-~dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~~g~~dg~i~iwd~~~~~~~~~~~~--h 335 (435)
T 1p22_A 265 D--DKYIVSAS-GDR-TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLV-VSGSSDNTIRLWDIECGACLRVLEG--H 335 (435)
T ss_dssp E--TTEEEEEE-TTS-EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEE-EEEETTSCEEEEETTTCCEEEEECC--C
T ss_pred C--CCEEEEEe-CCC-eEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEE-EEEeCCCeEEEEECCCCCEEEEEeC--C
Confidence 4 34444443 333 78888877655444444444455667776 4444 4444567788888764433222222 1
Q ss_pred CccceeeeeeCCeEEEEeCCCCcEEEEcccC
Q psy6570 160 GYKPYKLEVFEDNLYFSTYRTNNILKINKFG 190 (713)
Q Consensus 160 ~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~ 190 (713)
......+++++.. +++....+.|..++...
T Consensus 336 ~~~v~~~~~~~~~-l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 336 EELVRCIRFDNKR-IVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp SSCEEEEECCSSE-EEEEETTSCEEEEEHHH
T ss_pred cCcEEEEEecCCE-EEEEeCCCcEEEEECCC
Confidence 2234556664444 44445567777777543
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=94.96 E-value=1.4 Score=44.21 Aligned_cols=153 Identities=10% Similarity=-0.051 Sum_probs=76.9
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCC-CCCcceEEEcCCCCc-EEEEccCCCCeEEEEecCCC
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG-LNEPYDIALEPLSGR-MFWTELGIKPRISGASIDGK 105 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~-~~~p~~iavD~~~~~-ly~td~~~~~~I~~~~~dG~ 105 (713)
...+.+.+....|+.. . ..+.|.+.++.+.....+.... ......+++.+.... ++++-.... .|...++...
T Consensus 131 ~~~~~~~~~~~~l~s~-s---~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~-~i~i~d~~~~ 205 (340)
T 4aow_A 131 VLSVAFSSDNRQIVSG-S---RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK-LVKVWNLANC 205 (340)
T ss_dssp EEEEEECTTSSCEEEE-E---TTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTS-CEEEEETTTT
T ss_pred eeEEEEeecCccceee-c---CCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCC-EEEEEECCCC
Confidence 3444444444444333 3 3456667776665544433222 234556676654443 444433323 6777777655
Q ss_pred CcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEeCCCCcEEE
Q psy6570 106 NKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILK 185 (713)
Q Consensus 106 ~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~ 185 (713)
.....+.........|++++.+..|+.+ ...+.|...++........... ......+.+..+..+++....+.|..
T Consensus 206 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~d~~i~i 281 (340)
T 4aow_A 206 KLKTNHIGHTGYLNTVTVSPDGSLCASG-GKDGQAMLWDLNEGKHLYTLDG---GDIINALCFSPNRYWLCAATGPSIKI 281 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEE-ETTCEEEEEETTTTEEEEEEEC---SSCEEEEEECSSSSEEEEEETTEEEE
T ss_pred ceeeEecCCCCcEEEEEECCCCCEEEEE-eCCCeEEEEEeccCceeeeecC---CceEEeeecCCCCceeeccCCCEEEE
Confidence 4444443334456789999766555544 4556787777765443333322 11223344433323333334455655
Q ss_pred Eccc
Q psy6570 186 INKF 189 (713)
Q Consensus 186 ~~~~ 189 (713)
.+..
T Consensus 282 wd~~ 285 (340)
T 4aow_A 282 WDLE 285 (340)
T ss_dssp EETT
T ss_pred EECC
Confidence 5544
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.99 Score=45.09 Aligned_cols=116 Identities=10% Similarity=-0.002 Sum_probs=60.0
Q ss_pred CCCCceEEEecc--CCeEEEeecCCCCCCeEEEEecCCceE-EEE------Ec------CCCCCcceEEEcCC---CCcE
Q psy6570 25 LHDPRGVAVDWV--GKNLYWTDAGGRSSNNIMVSTLEGRKK-RTL------LN------TGLNEPYDIALEPL---SGRM 86 (713)
Q Consensus 25 ~~~p~gla~D~~--~~~ly~td~~~~~~~~I~~~~~~G~~~-~~l------~~------~~~~~p~~iavD~~---~~~l 86 (713)
...+..|++.+. +..|+.+. ..+.|.+.++..... ..+ .. ........+++.|. ...|
T Consensus 110 ~~~v~~~~~~~~~~~~~l~~~~----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 185 (351)
T 3f3f_A 110 KGSLYSVKFAPAHLGLKLACLG----NDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKL 185 (351)
T ss_dssp SSCEEEEEECCGGGCSEEEEEE----TTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEE
T ss_pred CCceeEEEEcCCCCCcEEEEec----CCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEE
Confidence 344677888876 55555444 467888888654321 110 00 12345667888875 4444
Q ss_pred EEEccCCCCeEEEEecCCCCcEEEEe--CCCCCCeeEEEeCCCC---eEEEEcCCCCcEEEEeCC
Q psy6570 87 FWTELGIKPRISGASIDGKNKFNLVD--NNIQWPTGITIDYPSQ---RLYWADPKARTIESINLN 146 (713)
Q Consensus 87 y~td~~~~~~I~~~~~dG~~~~~l~~--~~~~~p~glavd~~~~---~LY~~d~~~~~I~~~~~~ 146 (713)
+.+.. .. .+............+.. ........|++++... .++++-...+.|...++.
T Consensus 186 ~~~~~-~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 186 AVSAL-EQ-AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT 248 (351)
T ss_dssp EEEET-TE-EEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred EEecC-CC-cEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCC
Confidence 44443 23 33333333222222222 2234567899997652 455554455666666554
|
| >2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.027 Score=39.26 Aligned_cols=32 Identities=31% Similarity=0.848 Sum_probs=24.7
Q ss_pred CCCCCCCeecCCCCccCCCCCceeeCCCCcccCCCCc
Q psy6570 634 HFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQT 670 (713)
Q Consensus 634 ~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~ 670 (713)
+.|.+ |+|.. +.....+.|.|+.||+|++|+.
T Consensus 18 ~yC~n-G~C~~----i~~~~~~~C~C~~gy~G~RCe~ 49 (50)
T 2rnl_A 18 NFCIH-GECKY----IEHLEAVTCKCQQEYFGERCGE 49 (50)
T ss_dssp GTCSS-SEEEE----ETTTTEEEEECCSSCCSSSCCC
T ss_pred CcCCC-CEEEE----ecCCCCeeEECCCCcccccccc
Confidence 67887 59973 1234457999999999999986
|
| >1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A | Back alignment and structure |
|---|
Probab=94.88 E-value=0.0065 Score=59.39 Aligned_cols=38 Identities=26% Similarity=0.732 Sum_probs=27.1
Q ss_pred CCCCC--CCCCCCCcEEeecCCCceeeCCCCCc--CCCCCcC
Q psy6570 552 ANKCT--PNYCSNNGTCVLIEGKPSCKCLPPYS--GKQCTER 589 (713)
Q Consensus 552 ~~~C~--~~~C~~~~~C~~~~g~~~C~C~~G~~--G~~C~~~ 589 (713)
+++|. ..+|+.++.|+|+.|+|.|.|++||. |..|.+.
T Consensus 5 iDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG~~C~d~ 46 (285)
T 1gl4_A 5 QQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAE 46 (285)
T ss_dssp --CHHHHGGGSCTTEEEEECSSCEEEEECTTEEECSSSEEET
T ss_pred chhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCCCCCcCCCC
Confidence 66776 45788888888888888888888887 4456553
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.85 E-value=1.7 Score=44.00 Aligned_cols=115 Identities=5% Similarity=-0.112 Sum_probs=72.7
Q ss_pred CCCceEEEec--cCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCC-CCCcceEEEcCCCCcEEEEccCCCCeEEEEec
Q psy6570 26 HDPRGVAVDW--VGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG-LNEPYDIALEPLSGRMFWTELGIKPRISGASI 102 (713)
Q Consensus 26 ~~p~gla~D~--~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~-~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~ 102 (713)
.....|++.+ . +.++++-. ..+.|.+.++.......+.... ......+++.|. +.++.+-.... .|...++
T Consensus 126 ~~v~~~~~~~~~~-~~~l~s~s---~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pd-g~~lasg~~dg-~i~iwd~ 199 (343)
T 3lrv_A 126 NEIIYMYGHNEVN-TEYFIWAD---NRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKD-SLLLALYSPDG-ILDVYNL 199 (343)
T ss_dssp SCEEEEECCC----CCEEEEEE---TTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTT-SCEEEEECTTS-CEEEEES
T ss_pred CCEEEEEcCCCCC-CCEEEEEe---CCCcEEEEECCCCcEEEEEecCCCCceEEEEECCC-CCEEEEEcCCC-EEEEEEC
Confidence 3467788877 4 44445544 5678999998765554333222 235788999974 55555533333 6888887
Q ss_pred CCCCcE-EEEeC-CCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCC
Q psy6570 103 DGKNKF-NLVDN-NIQWPTGITIDYPSQRLYWADPKARTIESINLNGK 148 (713)
Q Consensus 103 dG~~~~-~l~~~-~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~ 148 (713)
...... ..+.. .......|++++.+.+|..+.. +.|...++...
T Consensus 200 ~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~--~~v~iwd~~~~ 245 (343)
T 3lrv_A 200 SSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD--QTVVCFDLRKD 245 (343)
T ss_dssp SCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES--SBEEEEETTSS
T ss_pred CCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC--CeEEEEEcCCC
Confidence 755543 33333 3456789999987777777763 38888887654
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.64 Score=43.80 Aligned_cols=113 Identities=13% Similarity=0.026 Sum_probs=69.0
Q ss_pred EEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCC-------CCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCC
Q psy6570 64 RTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDG-------KNKFNLVDNNIQWPTGITIDYPSQRLYWADPK 136 (713)
Q Consensus 64 ~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG-------~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~ 136 (713)
+.+...++.....||++| ++.||.... +.|++.++.. ...+.|-....+.-..|.+| .++.||.+ .
T Consensus 33 ~~iG~~gw~~~~~laf~P-~G~LYaV~~---G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD-~~G~LYav--~ 105 (236)
T 1tl2_A 33 TLIGKGGWSNFKFLFLSP-GGELYGVLN---DKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFD-PNGYLYAV--S 105 (236)
T ss_dssp EEEESSSCTTCSEEEECT-TSCEEEEET---TEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEEC-TTSCEEEE--E
T ss_pred cccCccccccceeEEECC-CccEEEEeC---CeEEEECCCCCCcccccccccEecccccccceEEEEC-CCCCEEEe--C
Confidence 344544577888999999 999999932 2799988743 12233433344445789999 57899998 3
Q ss_pred CCcEEEEeC--CCCc-----eeEEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEc
Q psy6570 137 ARTIESINL--NGKD-----RFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKIN 187 (713)
Q Consensus 137 ~~~I~~~~~--~g~~-----~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~ 187 (713)
.++|+|.+. ++.. -.+|... ....-..|.++ ++.||-+. ++.+++-.
T Consensus 106 dG~iyr~~pP~~~~~~Wl~~a~~vg~~--gw~~~~~lff~p~G~Lyav~--dg~lyr~~ 160 (236)
T 1tl2_A 106 KDKLYKASPPQSDTDNWIARATEVGSG--GWSGFKFLFFHPNGYLYAVH--GQQFYKAL 160 (236)
T ss_dssp TTEEEEESCCCSTTCCHHHHSEEEECS--SGGGEEEEEECTTSCEEEEE--TTEEEEEC
T ss_pred CCEEEEeCCCcCCCCceeccccEeccC--CCCceEEEEECCCceEEEEe--CCcEEecC
Confidence 389999986 3322 1222221 12222444444 66777776 45565543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.80 E-value=2.4 Score=42.99 Aligned_cols=115 Identities=9% Similarity=0.013 Sum_probs=65.6
Q ss_pred CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceE--EEEEcC-CCCCcceEEEcCCCCcEEEEccCCCCeEEEEecC
Q psy6570 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKK--RTLLNT-GLNEPYDIALEPLSGRMFWTELGIKPRISGASID 103 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~--~~l~~~-~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~d 103 (713)
....|++.+.+..|. +-. ..+.|.+.++++... +.++.. .......|++.|...+|+...... .|..-+++
T Consensus 18 ~v~~l~~sp~g~~la-s~~---~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~--~v~iw~~~ 91 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLA-SCG---GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA--TTCIWKKN 91 (345)
T ss_dssp CEEEEEECTTSSCEE-EEE---TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS--CEEEEEEC
T ss_pred cEEEEEECCCCCEEE-EEc---CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC--cEEEEEcc
Confidence 446789988766555 444 467788888766532 222222 235678899998655555544332 34444444
Q ss_pred CCCcE--EEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCC
Q psy6570 104 GKNKF--NLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGK 148 (713)
Q Consensus 104 G~~~~--~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~ 148 (713)
....+ ..+.........|++.+.+.+|..+. ..+.|...+++..
T Consensus 92 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s-~D~~v~iwd~~~~ 137 (345)
T 3fm0_A 92 QDDFECVTTLEGHENEVKSVAWAPSGNLLATCS-RDKSVWVWEVDEE 137 (345)
T ss_dssp CC-EEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEECTT
T ss_pred CCCeEEEEEccCCCCCceEEEEeCCCCEEEEEE-CCCeEEEEECCCC
Confidence 33322 22233344568899998666555544 4556666666543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.46 Score=54.45 Aligned_cols=145 Identities=15% Similarity=0.224 Sum_probs=85.3
Q ss_pred CCceeEEEccCc----ccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCC--ceEEEEEcCCCCCcceEEE
Q psy6570 6 SGNVTRVKREMN----LKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEG--RKKRTLLNTGLNEPYDIAL 79 (713)
Q Consensus 6 ~~~I~~~~~~~~----~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G--~~~~~l~~~~~~~p~~iav 79 (713)
...|+.+++++. .+.+.......... +++.++.||+.-.......+|++.++++ ...+.++...-....++++
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~ 371 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGI 371 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEE
T ss_pred cceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEE
Confidence 346777777653 23333333333333 3467788887643222357799999987 3445555443233445666
Q ss_pred cCCCCcEEEEccC-CCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEc---CCCCcEEEEeCCCCceeEE
Q psy6570 80 EPLSGRMFWTELG-IKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWAD---PKARTIESINLNGKDRFVV 153 (713)
Q Consensus 80 D~~~~~ly~td~~-~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d---~~~~~I~~~~~~g~~~~~~ 153 (713)
+ ++.|+++... ...+|++.+++|+..+.+.........+++++++++.|+++- ....+|+.+++++...+++
T Consensus 372 ~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 372 A--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW 447 (741)
T ss_dssp E--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred E--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 5 6677776432 234788888887644444221233456788887777777653 2346799999877655444
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.92 Score=52.26 Aligned_cols=152 Identities=9% Similarity=-0.023 Sum_probs=89.9
Q ss_pred CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcC--CCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCC
Q psy6570 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNT--GLNEPYDIALEPLSGRMFWTELGIKPRISGASIDG 104 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~--~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG 104 (713)
.+.+|+.|. .+.||+.-. .+.|.+++.+....+.+... ....+..|+.|+ ++.||+... . .|.+++.+.
T Consensus 408 ~v~~i~~d~-~g~lWigt~----~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwigt~--~-Gl~~~~~~~ 478 (781)
T 3v9f_A 408 SVLCSLKDS-EGNLWFGTY----LGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWIGTH--A-GVFVIDLAS 478 (781)
T ss_dssp BEEEEEECT-TSCEEEEET----TEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEEEET--T-EEEEEESSS
T ss_pred ceEEEEECC-CCCEEEEec----cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEEEEC--C-ceEEEeCCC
Confidence 356677774 467776543 35688888765443333221 234677899985 677877654 3 688988876
Q ss_pred CCcEEEEeCC-----CCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCc--cceeeeee-CCeEEEE
Q psy6570 105 KNKFNLVDNN-----IQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGY--KPYKLEVF-EDNLYFS 176 (713)
Q Consensus 105 ~~~~~l~~~~-----~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~--~p~~i~~~-~~~ly~t 176 (713)
...+.+.... ...+..|+.| ..++|+++.... -|++++.++...+.+... ..+. ...+|..+ ++.||++
T Consensus 479 ~~~~~~~~~~~~~~~~~~i~~i~~d-~~g~lWigt~~~-Gl~~~~~~~~~~~~~~~~-~~l~~~~i~~i~~d~~g~lWi~ 555 (781)
T 3v9f_A 479 KKVIHHYDTSNSQLLENFVRSIAQD-SEGRFWIGTFGG-GVGIYTPDMQLVRKFNQY-EGFCSNTINQIYRSSKGQMWLA 555 (781)
T ss_dssp SSCCEEECTTTSSCSCSCEEEEEEC-TTCCEEEEESSS-CEEEECTTCCEEEEECTT-TTCSCSCEEEEEECTTSCEEEE
T ss_pred CeEEecccCcccccccceeEEEEEc-CCCCEEEEEcCC-CEEEEeCCCCeEEEccCC-CCCCCCeeEEEEECCCCCEEEE
Confidence 5554443222 2456788888 467888776533 488888776554444321 1122 23456555 4567666
Q ss_pred eCCCCcEEEEcccCC
Q psy6570 177 TYRTNNILKINKFGN 191 (713)
Q Consensus 177 d~~~~~i~~~~~~~~ 191 (713)
.. .+.|.++++..+
T Consensus 556 T~-~Glv~~~d~~~~ 569 (781)
T 3v9f_A 556 TG-EGLVCFPSARNF 569 (781)
T ss_dssp ET-TEEEEESCTTTC
T ss_pred EC-CCceEEECCCCC
Confidence 54 333377765433
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=94.67 E-value=0.51 Score=48.71 Aligned_cols=176 Identities=12% Similarity=0.035 Sum_probs=91.4
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCc
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNK 107 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~ 107 (713)
++.++|.+.+..|.++-.+ ..+.|.+.++........+.. -....+|++.|...+|..+. . . .+.+........
T Consensus 136 ~~~v~fSpDg~~la~as~~--~d~~i~iwd~~~~~~~~~~~~-~~~V~~v~fspdg~~l~s~s-~-~-~~~~~~~~~~~~ 209 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSK--VPAIMRIIDPSDLTEKFEIET-RGEVKDLHFSTDGKVVAYIT-G-S-SLEVISTVTGSC 209 (365)
T ss_dssp EEEEEECTTSSCEEEEESC--SSCEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSSEEEEEC-S-S-CEEEEETTTCCE
T ss_pred EEEEEEcCCCCEEEEEECC--CCCEEEEeECCCCcEEEEeCC-CCceEEEEEccCCceEEecc-c-e-eEEEEEeccCcc
Confidence 4678999887777765431 356788888876554433333 35688999998655554443 2 2 455555433222
Q ss_pred E-EEEe-CCCCCCeeEEEeCCCCeEEEEcCCC-C--cEEEEeCCCCceeEEEe--cCCCCccceeeeee-CCeEEEEeCC
Q psy6570 108 F-NLVD-NNIQWPTGITIDYPSQRLYWADPKA-R--TIESINLNGKDRFVVYH--TEDNGYKPYKLEVF-EDNLYFSTYR 179 (713)
Q Consensus 108 ~-~l~~-~~~~~p~glavd~~~~~LY~~d~~~-~--~I~~~~~~g~~~~~~~~--~~~~~~~p~~i~~~-~~~ly~td~~ 179 (713)
. .... ..-.....+++.+.+..|..+.... . .|+..++.......+.. ..........|++. ++.++.+-..
T Consensus 210 ~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~ 289 (365)
T 4h5i_A 210 IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN 289 (365)
T ss_dssp EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET
T ss_pred eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC
Confidence 2 2211 1122356789998777776654322 2 34555544333222211 11111223455554 3445555556
Q ss_pred CCcEEEEcccCCCcceee-eccccccccEEE
Q psy6570 180 TNNILKINKFGNSDFNVL-ANNLNRASDVLI 209 (713)
Q Consensus 180 ~~~i~~~~~~~~~~~~~~-~~~~~~~~~i~v 209 (713)
.+.|..++...+..+..+ ......+..+++
T Consensus 290 D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~f 320 (365)
T 4h5i_A 290 DNSIALVKLKDLSMSKIFKQAHSFAITEVTI 320 (365)
T ss_dssp TSCEEEEETTTTEEEEEETTSSSSCEEEEEE
T ss_pred CCEEEEEECCCCcEEEEecCcccCCEEEEEE
Confidence 677877776655444332 223333444443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.84 Score=52.59 Aligned_cols=151 Identities=16% Similarity=0.060 Sum_probs=87.3
Q ss_pred CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCC-----CCCcceEEEcCCCCcEEEEccCCCCeEEEE
Q psy6570 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG-----LNEPYDIALEPLSGRMFWTELGIKPRISGA 100 (713)
Q Consensus 26 ~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~-----~~~p~~iavD~~~~~ly~td~~~~~~I~~~ 100 (713)
..+..|+.|. .++||++-. ..|.++++++...+.+.... ...+..|+.|+ .|.|+++..+. .|.+.
T Consensus 450 ~~v~~i~~d~-~g~lwigt~-----~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt~~~--Gl~~~ 520 (781)
T 3v9f_A 450 LDVRVFYEDK-NKKIWIGTH-----AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWIGTFGG--GVGIY 520 (781)
T ss_dssp CCEEEEEECT-TSEEEEEET-----TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEEEESSS--CEEEE
T ss_pred CeEEEEEECC-CCCEEEEEC-----CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEEEEcCC--CEEEE
Confidence 3456777774 467766543 56888887764443333221 24677899995 67887776432 48888
Q ss_pred ecCCCCcEEEEeC-CC--CCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecC-CCCccceeeeee-CCeEEE
Q psy6570 101 SIDGKNKFNLVDN-NI--QWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTE-DNGYKPYKLEVF-EDNLYF 175 (713)
Q Consensus 101 ~~dG~~~~~l~~~-~~--~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~-~~~~~p~~i~~~-~~~ly~ 175 (713)
+.++...+.+... .+ .....|+.| ..++||++.. .+-|.+++......+.+.... .......+|..+ +++||+
T Consensus 521 ~~~~~~~~~~~~~~~l~~~~i~~i~~d-~~g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~ 598 (781)
T 3v9f_A 521 TPDMQLVRKFNQYEGFCSNTINQIYRS-SKGQMWLATG-EGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWA 598 (781)
T ss_dssp CTTCCEEEEECTTTTCSCSCEEEEEEC-TTSCEEEEET-TEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEE
T ss_pred eCCCCeEEEccCCCCCCCCeeEEEEEC-CCCCEEEEEC-CCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEE
Confidence 8766543333211 12 234677788 4677887765 443388777655444443221 111223566666 567777
Q ss_pred EeCCCCcEEEEccc
Q psy6570 176 STYRTNNILKINKF 189 (713)
Q Consensus 176 td~~~~~i~~~~~~ 189 (713)
+. .+.|.++++.
T Consensus 599 ~t--~~Gl~~~~~~ 610 (781)
T 3v9f_A 599 ST--NTGISCYITS 610 (781)
T ss_dssp EC--SSCEEEEETT
T ss_pred Ec--CCceEEEECC
Confidence 64 3457777764
|
| >1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ... | Back alignment and structure |
|---|
Probab=94.63 E-value=0.014 Score=63.84 Aligned_cols=37 Identities=35% Similarity=0.723 Sum_probs=34.0
Q ss_pred CCCCCCCCCCCCcEEee-cCCCceeeCC-CCCcCCCCCc
Q psy6570 552 ANKCTPNYCSNNGTCVL-IEGKPSCKCL-PPYSGKQCTE 588 (713)
Q Consensus 552 ~~~C~~~~C~~~~~C~~-~~g~~~C~C~-~G~~G~~C~~ 588 (713)
+++|.++||.++|+|.+ ..++|+|.|. +||+|..|+.
T Consensus 2 ~d~C~~~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~ 40 (553)
T 1q4g_A 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40 (553)
T ss_dssp CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTCE
T ss_pred CCcCCCCCCCCCCCcCCCCCCceEeeCCCCCcCCCCCCC
Confidence 46899999999999999 7889999999 9999999986
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.58 E-value=1.6 Score=45.79 Aligned_cols=156 Identities=8% Similarity=0.022 Sum_probs=85.7
Q ss_pred CeEEEeecCCCCCCeEEEEecCCceEEEEEcC--CCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEe-CC
Q psy6570 38 KNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNT--GLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVD-NN 114 (713)
Q Consensus 38 ~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~--~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~-~~ 114 (713)
+.++++-. ..+.|.+.++........+.. ....+..|+++|...+|+..... . .|...++........+. ..
T Consensus 182 ~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-g-~i~iwd~~~~~~~~~~~~~~ 256 (437)
T 3gre_A 182 KSLLVALT---NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTR-G-IIDIWDIRFNVLIRSWSFGD 256 (437)
T ss_dssp CEEEEEEE---TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETT-S-CEEEEETTTTEEEEEEBCTT
T ss_pred CCEEEEEe---CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCC-C-eEEEEEcCCccEEEEEecCC
Confidence 34444444 468899999865444333332 23578899999865555544432 3 57777776433222222 22
Q ss_pred CCCCeeEEEeCC---CCeEEEEcCCCCcEEEEeCCCCc-eeEEEecCC-----------------------CCccceeee
Q psy6570 115 IQWPTGITIDYP---SQRLYWADPKARTIESINLNGKD-RFVVYHTED-----------------------NGYKPYKLE 167 (713)
Q Consensus 115 ~~~p~glavd~~---~~~LY~~d~~~~~I~~~~~~g~~-~~~~~~~~~-----------------------~~~~p~~i~ 167 (713)
......|++.+. +++++++-...+.|...++.... ...+..... .......|+
T Consensus 257 ~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~ 336 (437)
T 3gre_A 257 HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTIS 336 (437)
T ss_dssp CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEE
T ss_pred CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEE
Confidence 223456655542 34455555566778888876433 333321110 001123455
Q ss_pred eeCCeEEEEeCCCCcEEEEcccCCCcceeee
Q psy6570 168 VFEDNLYFSTYRTNNILKINKFGNSDFNVLA 198 (713)
Q Consensus 168 ~~~~~ly~td~~~~~i~~~~~~~~~~~~~~~ 198 (713)
+.++.++++....+.|...+...+.....+.
T Consensus 337 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 337 VSNDKILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp EETTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred ECCceEEEecCCCCeEEEEECCCcccceEEe
Confidence 5556677777677888888876665555444
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=94.52 E-value=1.3 Score=50.23 Aligned_cols=178 Identities=8% Similarity=0.009 Sum_probs=99.3
Q ss_pred CceeEEEccCcccEEecCCCCC--ceEEEeccCCeEEEeecCCC---------CCCeEEEEecCCce--EEEEEcCC--C
Q psy6570 7 GNVTRVKREMNLKTVLSNLHDP--RGVAVDWVGKNLYWTDAGGR---------SSNNIMVSTLEGRK--KRTLLNTG--L 71 (713)
Q Consensus 7 ~~I~~~~~~~~~~~~~~~~~~p--~gla~D~~~~~ly~td~~~~---------~~~~I~~~~~~G~~--~~~l~~~~--~ 71 (713)
..|+.+++.+...+....+... .++++.+.+..||++..... ...+|++.++.+.. .+.+.... .
T Consensus 147 ~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~ 226 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP 226 (695)
T ss_dssp CEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT
T ss_pred EEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC
Confidence 4577777776543201122222 67888888888887764210 13459999987654 23343322 1
Q ss_pred CCcceEEEcCCCCcEEEEccCC--CCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcC---CCCcEEEEeCC
Q psy6570 72 NEPYDIALEPLSGRMFWTELGI--KPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADP---KARTIESINLN 146 (713)
Q Consensus 72 ~~p~~iavD~~~~~ly~td~~~--~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~---~~~~I~~~~~~ 146 (713)
....++++.|..++|+++.... ...|+..+..+...+.|... .......+. +.++ ||+... ...+|++++++
T Consensus 227 ~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~-~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~ 303 (695)
T 2bkl_A 227 TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG-VGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPA 303 (695)
T ss_dssp TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC-SSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTT
T ss_pred EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecC-CCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCC
Confidence 2345788998888887765332 23788877655555555542 222233333 3455 666532 45789999997
Q ss_pred CCce---eEEEecCCCCccceeeeeeCCeEEEEeCC--CCcEEEEcc
Q psy6570 147 GKDR---FVVYHTEDNGYKPYKLEVFEDNLYFSTYR--TNNILKINK 188 (713)
Q Consensus 147 g~~~---~~~~~~~~~~~~p~~i~~~~~~ly~td~~--~~~i~~~~~ 188 (713)
+... +.+..... .....++++.+++|+++... ..+|+.++.
T Consensus 304 ~~~~~~~~~l~~~~~-~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~ 349 (695)
T 2bkl_A 304 KPARASWKEIVPEDS-SASLLSVSIVGGHLSLEYLKDATSEVRVATL 349 (695)
T ss_dssp BCSGGGCEEEECCCS-SCEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred CCCccCCeEEecCCC-CCeEEEEEEECCEEEEEEEECCEEEEEEEeC
Confidence 6542 44443211 11234566667777776543 334555554
|
| >2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.016 Score=42.29 Aligned_cols=22 Identities=23% Similarity=0.683 Sum_probs=19.9
Q ss_pred CCCCCCeeeccC-CCceeeeCCCCc
Q psy6570 227 PCHQSALCINLP-SSHTCLCPDHLT 250 (713)
Q Consensus 227 ~C~~~~~C~~~~-g~~~C~C~~G~~ 250 (713)
.| .+.|++++ |+|+|.|++||.
T Consensus 8 gC--~~~C~n~~~gs~~C~C~~Gy~ 30 (59)
T 2wph_E 8 RC--EQFCKNSADNKVVCSCTEGYR 30 (59)
T ss_dssp GC--SSEEEECSTTCEEEECCTTEE
T ss_pred Cc--CCEeEeCCCCCEEeeCCCCcE
Confidence 46 78999999 699999999998
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=94.35 E-value=6.1 Score=41.59 Aligned_cols=184 Identities=6% Similarity=-0.100 Sum_probs=91.2
Q ss_pred cCCceeEEEccCcccEE-ec-CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCC
Q psy6570 5 SSGNVTRVKREMNLKTV-LS-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPL 82 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~~~-~~-~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~ 82 (713)
.++.|...++.....+. +. ....+..|++.+. + ++++-. ..+.|.+.+++.......+.........|++.+.
T Consensus 140 ~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~-~-~l~s~s---~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~ 214 (464)
T 3v7d_B 140 DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-G-ILVSGS---TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 214 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECST-T-EEEEEE---TTSCEEEEETTTTEEEEEECCCSSCEEEEEEEES
T ss_pred CCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCC-C-EEEEEe---CCCCEEEEECCCCcEEEEECCCCCccEEEEEecC
Confidence 45667777765543221 22 3334566777644 3 444444 5788999998765544444333456677888752
Q ss_pred -CCcEEEEccCCCCeEEEEecCCCCcEEE---------------------EeCCCCCCeeEEEeCCCCeEEEEcCCCCcE
Q psy6570 83 -SGRMFWTELGIKPRISGASIDGKNKFNL---------------------VDNNIQWPTGITIDYPSQRLYWADPKARTI 140 (713)
Q Consensus 83 -~~~ly~td~~~~~~I~~~~~dG~~~~~l---------------------~~~~~~~p~glavd~~~~~LY~~d~~~~~I 140 (713)
++.++++-.... .|...++........ .....+...-.++++....|+.+. ..+.|
T Consensus 215 ~~~~~l~s~s~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~d~~i 292 (464)
T 3v7d_B 215 KNIKYIVTGSRDN-TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS-YDNTL 292 (464)
T ss_dssp SSCEEEEEEETTS-CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEE-TTSCE
T ss_pred CCCCEEEEEcCCC-cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEe-CCCeE
Confidence 334444443333 566666654332111 000111112233443355555544 45678
Q ss_pred EEEeCCCCceeEEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceee
Q psy6570 141 ESINLNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVL 197 (713)
Q Consensus 141 ~~~~~~g~~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~ 197 (713)
...++........... .......+++. ++.++++....+.|..++...+.....+
T Consensus 293 ~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 293 IVWDVAQMKCLYILSG--HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp EEEETTTTEEEEEECC--CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEECCCCcEEEEecC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 8888754433222221 12233445554 2334445455667777776555444333
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.34 E-value=5.1 Score=40.68 Aligned_cols=165 Identities=8% Similarity=-0.009 Sum_probs=90.2
Q ss_pred CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecC
Q psy6570 24 NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASID 103 (713)
Q Consensus 24 ~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~d 103 (713)
.......|++.+.+..|+ +-. ..+.|.+.+.........+.........+++.|....| .+-.... .|...++.
T Consensus 63 H~~~V~~~~~s~d~~~l~-s~s---~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-asg~~d~-~i~v~~~~ 136 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIV-SSS---QDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI-ACGGLDN-KCSVYPLT 136 (354)
T ss_dssp CSSCEEEEEECTTSSEEE-EEE---TTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEE-EEESTTS-EEEEEECC
T ss_pred CCCeEEEEEECCCCCEEE-EEe---CCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEE-EEeeCCC-CEEEEEEe
Confidence 344567888887655554 544 57788888865544443333444667889999855444 4433333 55555543
Q ss_pred CC------CcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeee--e-CCeEE
Q psy6570 104 GK------NKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEV--F-EDNLY 174 (713)
Q Consensus 104 G~------~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~--~-~~~ly 174 (713)
.. .....+.........+++.+...+|+.+. ..+.|...++........+... ......+++ . .+.++
T Consensus 137 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s-~D~~v~lwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 137 FDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS-GDGTCALWDVESGQLLQSFHGH--GADVLCLDLAPSETGNTF 213 (354)
T ss_dssp CCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTCCEEEEEECC--SSCEEEEEECCCSSCCEE
T ss_pred ccccccccccceeeeccCCcEEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEcCC--CCCeEEEEEEeCCCCCEE
Confidence 21 11122222344567888887666666543 4567777777544332222221 112233443 2 23566
Q ss_pred EEeCCCCcEEEEcccCCCcceee
Q psy6570 175 FSTYRTNNILKINKFGNSDFNVL 197 (713)
Q Consensus 175 ~td~~~~~i~~~~~~~~~~~~~~ 197 (713)
++-...+.|...+...+.....+
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~ 236 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAF 236 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEe
Confidence 66666677877776555443333
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=94.33 E-value=3 Score=46.27 Aligned_cols=160 Identities=11% Similarity=0.008 Sum_probs=87.7
Q ss_pred CCCceEEEeccCCeEEEeecCCCCCCeEEEEecC-Cce-EEEEEcCCCCCcceEEEcCCCCcEEEEccCCC--CeEEEEe
Q psy6570 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE-GRK-KRTLLNTGLNEPYDIALEPLSGRMFWTELGIK--PRISGAS 101 (713)
Q Consensus 26 ~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~-G~~-~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~--~~I~~~~ 101 (713)
.....+++.+.+..|. +-. ..+.|.+.++. ++. ....+.........|+++|...+|..+..+.. .+|+..+
T Consensus 60 ~~v~~~~~spdg~~la-sg~---~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd 135 (611)
T 1nr0_A 60 HQTTVAKTSPSGYYCA-SGD---VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 135 (611)
T ss_dssp SCEEEEEECTTSSEEE-EEE---TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT
T ss_pred CceEEEEECCCCcEEE-EEe---CCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee
Confidence 3457789988765554 433 46788888874 222 22222222356789999987776766554322 1344433
Q ss_pred cCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeee-CCeEEEEeCCC
Q psy6570 102 IDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRT 180 (713)
Q Consensus 102 ~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~ 180 (713)
. |+...++ .........+++.|....++++-...+.|...+.........+.. .......+++. ++.++.+-...
T Consensus 136 ~-~~~~~~l-~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~--H~~~V~~v~fspdg~~las~s~D 211 (611)
T 1nr0_A 136 T-GTSNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE--HTKFVHSVRYNPDGSLFASTGGD 211 (611)
T ss_dssp T-CCBCBCC-CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC--CSSCEEEEEECTTSSEEEEEETT
T ss_pred C-CCCccee-cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc--ccCceEEEEECCCCCEEEEEECC
Confidence 2 2222222 223445678999987765556655666777766543322222221 12233455554 44566666666
Q ss_pred CcEEEEcccCCCc
Q psy6570 181 NNILKINKFGNSD 193 (713)
Q Consensus 181 ~~i~~~~~~~~~~ 193 (713)
+.|+..+...+..
T Consensus 212 ~~i~lwd~~~g~~ 224 (611)
T 1nr0_A 212 GTIVLYNGVDGTK 224 (611)
T ss_dssp SCEEEEETTTCCE
T ss_pred CcEEEEECCCCcE
Confidence 7777777544443
|
| >2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.015 Score=41.41 Aligned_cols=23 Identities=17% Similarity=0.613 Sum_probs=20.5
Q ss_pred CCCCCCeeeccCC-CceeeeCCCCcc
Q psy6570 227 PCHQSALCINLPS-SHTCLCPDHLTE 251 (713)
Q Consensus 227 ~C~~~~~C~~~~g-~~~C~C~~G~~~ 251 (713)
.| .+.|+++++ +|+|.|++||..
T Consensus 8 gC--~~~C~n~~ggs~~C~C~~Gy~L 31 (53)
T 2bz6_L 8 GC--EQYCSDHTGTKRSCRCHEGYSL 31 (53)
T ss_dssp GC--SSEEEEETTTEEEEECCTTEEE
T ss_pred Cc--CCEeEcCCCCCEEeeCCCCCEE
Confidence 46 789999999 799999999983
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.24 E-value=1.3 Score=50.81 Aligned_cols=183 Identities=8% Similarity=0.009 Sum_probs=96.6
Q ss_pred cCCceeEEEccCcc-cEE--ec-CCCCCceEEEeccC-CeEEEeecCCCCCCeEEEEecCCceE--EEEEcCCCCCcceE
Q psy6570 5 SSGNVTRVKREMNL-KTV--LS-NLHDPRGVAVDWVG-KNLYWTDAGGRSSNNIMVSTLEGRKK--RTLLNTGLNEPYDI 77 (713)
Q Consensus 5 ~~~~I~~~~~~~~~-~~~--~~-~~~~p~gla~D~~~-~~ly~td~~~~~~~~I~~~~~~G~~~--~~l~~~~~~~p~~i 77 (713)
.++.|...++.+.. +.+ +. .......|++.+.. +.++++-. ..+.|.+.++++... .............|
T Consensus 29 ~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s---~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v 105 (753)
T 3jro_A 29 SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS---YDGKVLIWKEENGRWSQIAVHAVHSASVNSV 105 (753)
T ss_dssp TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEE---TTSCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred CCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEe---CCCeEEEEECCCCcccccccccCCCCCeEEE
Confidence 35566666665322 111 22 22345677776541 34444444 467888888876542 22222334567889
Q ss_pred EEcCCC-CcEEEEccCCCCeEEEEecCCC--CcEEEEeCCCCCCeeEEEeCC------------CCeEEEEcCCCCcEEE
Q psy6570 78 ALEPLS-GRMFWTELGIKPRISGASIDGK--NKFNLVDNNIQWPTGITIDYP------------SQRLYWADPKARTIES 142 (713)
Q Consensus 78 avD~~~-~~ly~td~~~~~~I~~~~~dG~--~~~~l~~~~~~~p~glavd~~------------~~~LY~~d~~~~~I~~ 142 (713)
++.|.. +.++++-.... .|...++... .....+.........|++++. ++.++++-...+.|..
T Consensus 106 ~~sp~~~~~~l~sgs~dg-~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~i 184 (753)
T 3jro_A 106 QWAPHEYGPLLLVASSDG-KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184 (753)
T ss_dssp EECCGGGCSEEEEEETTS-EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEE
T ss_pred EECCCCCCCEEEEEeCCC-cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEE
Confidence 999862 44444443333 6777777654 223333344456678888874 2444444445666777
Q ss_pred EeCCCCce--eEEEecCCCCccceeeeee-C---CeEEEEeCCCCcEEEEcccCC
Q psy6570 143 INLNGKDR--FVVYHTEDNGYKPYKLEVF-E---DNLYFSTYRTNNILKINKFGN 191 (713)
Q Consensus 143 ~~~~g~~~--~~~~~~~~~~~~p~~i~~~-~---~~ly~td~~~~~i~~~~~~~~ 191 (713)
.++..... ..+............+++. . +.++++-...+.|..++...+
T Consensus 185 wd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp EEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred EeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 76644321 2222211112233455554 2 455666556667777765543
|
| >2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.037 Score=48.75 Aligned_cols=60 Identities=37% Similarity=0.778 Sum_probs=37.7
Q ss_pred CCCCCCCcEEcCC--CCCe-eccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEeecCC-CceeeCCCCCcCCC
Q psy6570 510 TCTCLNGGTCIPN--SKNN-VCKCPSQYTGRRCECAVGDTSCASLANKCTPNYCSNNGTCVLIEG-KPSCKCLPPYSGKQ 585 (713)
Q Consensus 510 ~~~C~~~g~C~~~--~~~~-~C~C~~g~~G~~C~~~~~~~~c~~~~~~C~~~~C~~~~~C~~~~g-~~~C~C~~G~~G~~ 585 (713)
.++|.|+|+|+.. ...+ +|.|++||.|..|+.+. + ..|....| .|+........|..
T Consensus 12 ~cpC~NGGtC~~~~~~s~~~~C~Cp~g~~G~~Cei~~---------~----------~~C~~g~G~~YrG~~s~T~sG~~ 72 (145)
T 2i9a_A 12 NCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDK---------S----------KTCYEGNGHFYRGKASTDTMGRP 72 (145)
T ss_dssp CCCCCTTCEEEECSSSTTCEEEECCTTEESTTSCEES---------S----------CCEECTTCTTCCSCCCBBTTSCB
T ss_pred CCCCCCCCCcCCCccccCCccccCCCCCCCCceeccc---------c----------ccCCCCCccccccceecCCcCCc
Confidence 3478888888754 1234 78999999988888652 1 02333222 46666666666777
Q ss_pred CCc
Q psy6570 586 CTE 588 (713)
Q Consensus 586 C~~ 588 (713)
|+.
T Consensus 73 Cq~ 75 (145)
T 2i9a_A 73 CLP 75 (145)
T ss_dssp CCC
T ss_pred ccC
Confidence 764
|
| >2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.041 Score=48.44 Aligned_cols=57 Identities=30% Similarity=0.691 Sum_probs=32.3
Q ss_pred CCCCCcEeccC--CCCc-cccCCCCCcCCCCccCCCCCCCCCCeeecCCC-CCeecCCCCccCCCCC
Q psy6570 422 KCQNGGVCVNK--TTGL-ECDCPKFYYGKNCQYSQCKNYCVNGECSITDS-GPKCMCSPGYSGKKCD 484 (713)
Q Consensus 422 ~C~~~~~C~~~--~~~~-~C~C~~G~~g~~C~~~~C~~~~~~~~C~~~~~-~~~C~C~~G~~g~~C~ 484 (713)
||.++|+|+.. ...+ .|.|++||.|..|+++... .|....| .|+........|..|+
T Consensus 14 pC~NGGtC~~~~~~s~~~~C~Cp~g~~G~~Cei~~~~------~C~~g~G~~YrG~~s~T~sG~~Cq 74 (145)
T 2i9a_A 14 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSK------TCYEGNGHFYRGKASTDTMGRPCL 74 (145)
T ss_dssp CCCTTCEEEECSSSTTCEEEECCTTEESTTSCEESSC------CEECTTCTTCCSCCCBBTTSCBCC
T ss_pred CCCCCCCcCCCccccCCccccCCCCCCCCceeccccc------cCCCCCccccccceecCCcCCccc
Confidence 57777777654 2334 6777777777777754321 3443333 2555555555555554
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=94.21 E-value=0.58 Score=53.57 Aligned_cols=121 Identities=12% Similarity=0.084 Sum_probs=70.0
Q ss_pred CceEEEeccCCeEE-EeecCCCCCCeEEEEecCCce-------EEEEEcC-C---CC--CcceEEEcCCCCcEE-EE-cc
Q psy6570 28 PRGVAVDWVGKNLY-WTDAGGRSSNNIMVSTLEGRK-------KRTLLNT-G---LN--EPYDIALEPLSGRMF-WT-EL 91 (713)
Q Consensus 28 p~gla~D~~~~~ly-~td~~~~~~~~I~~~~~~G~~-------~~~l~~~-~---~~--~p~~iavD~~~~~ly-~t-d~ 91 (713)
...+++-+.++.|+ +++.. .....|.+.++++.. ...++.. . +. .+..+++.|.+..|+ |. +.
T Consensus 262 ~~~~~wspdg~~~~~~~~r~-~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~ 340 (740)
T 4a5s_A 262 LCDVTWATQERISLQWLRRI-QNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNE 340 (740)
T ss_dssp EEEEEEEETTEEEEEEEESS-TTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECT
T ss_pred EEEEEEeCCCeEEEEEeCCC-CCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcC
Confidence 34566766655333 33331 123368888876543 2222211 1 11 145778887666665 54 33
Q ss_pred CCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCC------CCcEEEEeCCCCcee
Q psy6570 92 GIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPK------ARTIESINLNGKDRF 151 (713)
Q Consensus 92 ~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~------~~~I~~~~~~g~~~~ 151 (713)
.....|++.+++|...+.|.........-+.+| +++||++... ...|++++++|...+
T Consensus 341 ~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d--~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~ 404 (740)
T 4a5s_A 341 EGYRHICYFQIDKKDCTFITKGTWEVIGIEALT--SDYLYYISNEYKGMPGGRNLYKIQLIDYTKV 404 (740)
T ss_dssp TSCEEEEEEETTCSSCEESCCSSSCEEEEEEEC--SSEEEEEESCGGGCTTCBEEEEEETTEEEEE
T ss_pred CCceEEEEEECCCCceEecccCCEEEEEEEEEe--CCEEEEEEecCCCCCceeEEEEEECCCCCcc
Confidence 333489999999988776654332222224466 7888887543 357999999987654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=94.20 E-value=0.53 Score=49.98 Aligned_cols=122 Identities=13% Similarity=0.016 Sum_probs=76.2
Q ss_pred CCceEEEeccCCeEEE---eecCCCCCCeEEEEecCCc------eE-----EEEEcCCCCCcceEEEcCCCCcEEEEccC
Q psy6570 27 DPRGVAVDWVGKNLYW---TDAGGRSSNNIMVSTLEGR------KK-----RTLLNTGLNEPYDIALEPLSGRMFWTELG 92 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~---td~~~~~~~~I~~~~~~G~------~~-----~~l~~~~~~~p~~iavD~~~~~ly~td~~ 92 (713)
.+..|++.+.+..|++ +-. ..+.|.+.+++.. .. ..+.......+.+|++.|..+.++.+-..
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSE---YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETT---TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred cccEEEEcCCCCEEEEEEeccC---CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 4778999988777876 433 4567888876532 11 11111113467889999876777776544
Q ss_pred CCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEE
Q psy6570 93 IKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVV 153 (713)
Q Consensus 93 ~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~ 153 (713)
.. .|...++..................|++++.+.+|+.+. ..+.|...++.+.....+
T Consensus 171 Dg-~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs-~dg~v~iwd~~~~~~~~~ 229 (434)
T 2oit_A 171 DG-SIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK-QNGTVVQYLPTLQEKKVI 229 (434)
T ss_dssp TS-CEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE-TTSCEEEECTTCCEEEEE
T ss_pred CC-eEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc-CCCcEEEEccCCcccccc
Confidence 44 677777765422211222234678999998877777665 567788888885544433
|
| >3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ... | Back alignment and structure |
|---|
Probab=94.17 E-value=0.024 Score=61.95 Aligned_cols=36 Identities=33% Similarity=0.788 Sum_probs=32.4
Q ss_pred CCCCCCCCCCCcEEee-cCCCceeeCC-CCCcCCCCCc
Q psy6570 553 NKCTPNYCSNNGTCVL-IEGKPSCKCL-PPYSGKQCTE 588 (713)
Q Consensus 553 ~~C~~~~C~~~~~C~~-~~g~~~C~C~-~G~~G~~C~~ 588 (713)
++|.++||.++|+|++ ..++|.|.|+ +||+|..|+.
T Consensus 2 d~C~s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~ 39 (587)
T 3nt1_A 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39 (587)
T ss_dssp CTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTCE
T ss_pred CCCCCCCCCCCCEeeCCCCCCeEEecCCCCccCCCCCC
Confidence 6799999999999996 4588999999 9999999986
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.15 E-value=3 Score=42.24 Aligned_cols=176 Identities=14% Similarity=0.047 Sum_probs=90.3
Q ss_pred CCceeEEEccCccc---EEe-c-CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEE--EEEcCCCCCcceEE
Q psy6570 6 SGNVTRVKREMNLK---TVL-S-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKR--TLLNTGLNEPYDIA 78 (713)
Q Consensus 6 ~~~I~~~~~~~~~~---~~~-~-~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~--~l~~~~~~~p~~ia 78 (713)
++.|...++.+... ... . .......|++.+.+..|+.+. ..+.|.+.+++....+ ..+.........|+
T Consensus 37 D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s----~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~ 112 (345)
T 3fm0_A 37 DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS----FDATTCIWKKNQDDFECVTTLEGHENEVKSVA 112 (345)
T ss_dssp TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE----TTSCEEEEEECCC-EEEEEEECCCSSCEEEEE
T ss_pred CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE----CCCcEEEEEccCCCeEEEEEccCCCCCceEEE
Confidence 45555555554321 111 1 223467889988766665443 3566777766554322 22222235678899
Q ss_pred EcCCCCcEEEEccCCCCeEEEEecCCCCcEE---EEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEe
Q psy6570 79 LEPLSGRMFWTELGIKPRISGASIDGKNKFN---LVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYH 155 (713)
Q Consensus 79 vD~~~~~ly~td~~~~~~I~~~~~dG~~~~~---l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~ 155 (713)
+.|... ++++-.... .|...+++...... .+.........|++.+....|..+. ..+.|...+........+..
T Consensus 113 ~sp~~~-~l~s~s~D~-~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s-~d~~i~~w~~~~~~~~~~~~ 189 (345)
T 3fm0_A 113 WAPSGN-LLATCSRDK-SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASAS-YDDTVKLYREEEDDWVCCAT 189 (345)
T ss_dssp ECTTSS-EEEEEETTS-CEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEE-TTSCEEEEEEETTEEEEEEE
T ss_pred EeCCCC-EEEEEECCC-eEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEe-CCCcEEEEEecCCCEEEEEE
Confidence 998554 444433333 56666665443322 2223344567899998766665554 44556666654433222222
Q ss_pred cCCCCccceeeeee-CCeEEEEeCCCCcEEEEcc
Q psy6570 156 TEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINK 188 (713)
Q Consensus 156 ~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~ 188 (713)
..........|++. .+.++++-...+.|...+.
T Consensus 190 ~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 190 LEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 11112233556654 3444455455566665543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.89 Score=52.14 Aligned_cols=179 Identities=11% Similarity=0.051 Sum_probs=94.7
Q ss_pred CCceeEEEccCcc-cEE---ecCCCCCceEEEecc--CCeEEEeecCCCCCCeEEEEecCCce--EEEEEcCCCCCcceE
Q psy6570 6 SGNVTRVKREMNL-KTV---LSNLHDPRGVAVDWV--GKNLYWTDAGGRSSNNIMVSTLEGRK--KRTLLNTGLNEPYDI 77 (713)
Q Consensus 6 ~~~I~~~~~~~~~-~~~---~~~~~~p~gla~D~~--~~~ly~td~~~~~~~~I~~~~~~G~~--~~~l~~~~~~~p~~i 77 (713)
++.|...++.+.. ..+ ......+..|++.+. +..|+.+ . ..+.|.+.++.... ..............|
T Consensus 76 Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg-s---~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l 151 (753)
T 3jro_A 76 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA-S---SDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 151 (753)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE-E---TTSEEEEEECCSSSCCCCEEEECCSSCEEEE
T ss_pred CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEE-e---CCCcEEEEEeecCCCcceeEeecCCCceEEE
Confidence 5666666666542 111 223445678888877 4555544 4 46889998887652 222222334567788
Q ss_pred EEcCC------------CCcEEEEccCCCCeEEEEecCCCCcE-EE---EeCCCCCCeeEEEeCCC--CeEEEEcCCCCc
Q psy6570 78 ALEPL------------SGRMFWTELGIKPRISGASIDGKNKF-NL---VDNNIQWPTGITIDYPS--QRLYWADPKART 139 (713)
Q Consensus 78 avD~~------------~~~ly~td~~~~~~I~~~~~dG~~~~-~l---~~~~~~~p~glavd~~~--~~LY~~d~~~~~ 139 (713)
+++|. ++.++++..... .|...++...... .+ +.........|++++.. +.++++-...+.
T Consensus 152 ~~~p~~~~~~~~~~~~~d~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~ 230 (753)
T 3jro_A 152 SWAPATIEEDGEHNGTKESRKFVTGGADN-LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230 (753)
T ss_dssp EECCCC---------CGGGCCEEEEETTS-CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred EecCcccccccccccCCCCCEEEEEECCC-eEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence 99874 244444443333 5666666543321 22 12234456889999873 555555555667
Q ss_pred EEEEeCCCCcee---EEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEccc
Q psy6570 140 IESINLNGKDRF---VVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 140 I~~~~~~g~~~~---~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~ 189 (713)
|...++...... .+...........++++. ++.++++....+.|..++..
T Consensus 231 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 777776553211 111111111223445554 33444444456667766654
|
| >1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=94.10 E-value=0.018 Score=44.04 Aligned_cols=33 Identities=42% Similarity=1.013 Sum_probs=24.5
Q ss_pred CCCCCCCeecCCCCccCCCCCceeeCCCCcccCCCCcc
Q psy6570 634 HFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTL 671 (713)
Q Consensus 634 ~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~~ 671 (713)
+.|.++ +|... .....+.|.|++||+|.+|+..
T Consensus 46 ~yClnG-~C~~i----~~~~~~~C~C~~GYtG~RCE~l 78 (79)
T 1xdt_R 46 DFCIHG-ECKYV----KELRAPSCICHPGYHGERCHGL 78 (79)
T ss_dssp TCCSSE-EECCB----GGGTBCCEEECTTEESTTCCEE
T ss_pred CcCCCC-Eeeee----cCCCCeEEEcCCCccccccccc
Confidence 678885 89541 2223478999999999999864
|
| >3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.032 Score=50.59 Aligned_cols=35 Identities=40% Similarity=0.809 Sum_probs=20.0
Q ss_pred CCCCCCCCCcEEeecCCCceeeCCCCCcCCCCCcC
Q psy6570 555 CTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTER 589 (713)
Q Consensus 555 C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~ 589 (713)
|.+++|.++++|.+..++|.|.|.+||.|..|+..
T Consensus 122 ~~~~~C~~~g~C~~~~~~~~c~C~~g~~g~~C~~~ 156 (164)
T 3cfw_A 122 CQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQFV 156 (164)
T ss_dssp CCTTSSCSSEEEEEETTEEEEEECTTCBSSSSCBC
T ss_pred CCCCcCCCCCeecccCCCceeeeCCCccccccccc
Confidence 33445555666666555666666666666666543
|
| >2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.011 Score=65.17 Aligned_cols=48 Identities=19% Similarity=0.502 Sum_probs=42.7
Q ss_pred eecCCCcccCCCCcCCCCCCCCCCCCeecCCCCccCCCCCceeeCCCCcccCCCCccc
Q psy6570 615 CTCVNGWSGITCSERVSCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTLV 672 (713)
Q Consensus 615 C~C~~G~~G~~C~~~~~C~~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~~~ 672 (713)
..|.+||.|..|.....|...|..+|.|+. ++|+|.+||+|..|+.+.
T Consensus 520 ~~C~~gw~g~dc~i~~~Cp~~C~ghG~C~~----------G~C~Cd~G~~G~~C~~~~ 567 (725)
T 2e26_A 520 FDKQQTWAIDNVYIGDGCLDMCSGHGRCVQ----------GSCVCDEQWGGLYCDEPE 567 (725)
T ss_dssp CCTTCCEEEEEEEEESCSSGGGGGSEEEET----------TEEEECTTEESTTSCEES
T ss_pred CccCCCcccccccccCCCCcccCCCcEECC----------CCEeeCCCccCCCcCccC
Confidence 478999999999855779999999999998 799999999999998754
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.94 E-value=3.2 Score=41.81 Aligned_cols=94 Identities=9% Similarity=-0.081 Sum_probs=56.2
Q ss_pred cCCceeEEEccC-ccc---EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEE-
Q psy6570 5 SSGNVTRVKREM-NLK---TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIAL- 79 (713)
Q Consensus 5 ~~~~I~~~~~~~-~~~---~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iav- 79 (713)
.++.|...++.. ... .+......+..|++.+.++.|+.+. ..+.|.+.+++......+... ......|++
T Consensus 62 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----~dg~v~iwd~~~~~~~~~~~~-~~~v~~~~~~ 136 (368)
T 3mmy_A 62 WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS----CDKTAKMWDLSSNQAIQIAQH-DAPVKTIHWI 136 (368)
T ss_dssp TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTTEEEEEEEC-SSCEEEEEEE
T ss_pred CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc----CCCcEEEEEcCCCCceeeccc-cCceEEEEEE
Confidence 356677777664 222 2233345578899988666666544 467899999887665554432 356778888
Q ss_pred -cCCCCcEEEEccCCCCeEEEEecCCC
Q psy6570 80 -EPLSGRMFWTELGIKPRISGASIDGK 105 (713)
Q Consensus 80 -D~~~~~ly~td~~~~~~I~~~~~dG~ 105 (713)
++. +.++++-.... .|...++...
T Consensus 137 ~~~~-~~~l~~~~~dg-~i~vwd~~~~ 161 (368)
T 3mmy_A 137 KAPN-YSCVMTGSWDK-TLKFWDTRSS 161 (368)
T ss_dssp ECSS-CEEEEEEETTS-EEEEECSSCS
T ss_pred eCCC-CCEEEEccCCC-cEEEEECCCC
Confidence 654 44444433323 6777666543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.1 Score=59.59 Aligned_cols=160 Identities=11% Similarity=0.025 Sum_probs=84.6
Q ss_pred ceEEEeccCCeEEEeecCCCC------------------------------CCeEEEEecCCceEE---EEEc-----CC
Q psy6570 29 RGVAVDWVGKNLYWTDAGGRS------------------------------SNNIMVSTLEGRKKR---TLLN-----TG 70 (713)
Q Consensus 29 ~gla~D~~~~~ly~td~~~~~------------------------------~~~I~~~~~~G~~~~---~l~~-----~~ 70 (713)
.++++.+.++.|+++...... ...|.+.++++.... .+.. ..
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 251 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS 251 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence 578998888888765431001 115667777665421 1110 11
Q ss_pred CCCcceEEEcCCCCcEEEE--ccCC-CCeEEEEe----cCCCCcEEEE----eCCCCCCe-----eEEEeCCCCeEEEE-
Q psy6570 71 LNEPYDIALEPLSGRMFWT--ELGI-KPRISGAS----IDGKNKFNLV----DNNIQWPT-----GITIDYPSQRLYWA- 133 (713)
Q Consensus 71 ~~~p~~iavD~~~~~ly~t--d~~~-~~~I~~~~----~dG~~~~~l~----~~~~~~p~-----glavd~~~~~LY~~- 133 (713)
......+++.|. +.|+++ +... ..+|++.+ +++...+.++ ...-.+.. .+++.+++++||+.
T Consensus 252 ~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 330 (719)
T 1z68_A 252 DYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIF 330 (719)
T ss_dssp CEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred cceEEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEE
Confidence 123457888876 556554 3222 23588888 5543322222 11112222 68899888877763
Q ss_pred c--CCCCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEeCC------CCcEEEEcccCC
Q psy6570 134 D--PKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYR------TNNILKINKFGN 191 (713)
Q Consensus 134 d--~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~------~~~i~~~~~~~~ 191 (713)
. .+..+|+.+++++...+.+.........+.. . +++.||++... ...|++++..++
T Consensus 331 ~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~-~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 331 SDKDGYKHIHYIKDTVENAIQITSGKWEAINIFR-V-TQDSLFYSSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp ECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEE-E-CSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred EccCCceEEEEEECCCCceEecccCceEEEEEEE-E-eCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence 2 3445799999888765444322111111121 2 56678877643 345677765433
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.87 E-value=1.9 Score=48.73 Aligned_cols=178 Identities=10% Similarity=0.053 Sum_probs=96.6
Q ss_pred CCceeEEEccCccc--EEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCC---CCCcceEEEc
Q psy6570 6 SGNVTRVKREMNLK--TVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG---LNEPYDIALE 80 (713)
Q Consensus 6 ~~~I~~~~~~~~~~--~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~---~~~p~~iavD 80 (713)
++.|...++..... .+.........|++.+.++.|+ +-+ ..+.|.+.++.+.....+.... ......+++.
T Consensus 451 Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~s---~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 526 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIV-SAS---RDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS 526 (694)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEE-EEE---TTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEEC
T ss_pred CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEE-EEe---CCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEe
Confidence 45566666554322 2223344567888887766665 444 4678888888776555443321 2346678888
Q ss_pred CCCC-cEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCC
Q psy6570 81 PLSG-RMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDN 159 (713)
Q Consensus 81 ~~~~-~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 159 (713)
|... .++++-.... .|...++........+.........|++++.+..|. +-...+.|...++..... +.....
T Consensus 527 ~~~~~~~l~s~s~d~-~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~-sg~~Dg~i~iwd~~~~~~--~~~~~~- 601 (694)
T 3dm0_A 527 PNTLQPTIVSASWDK-TVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCA-SGGKDGVVLLWDLAEGKK--LYSLEA- 601 (694)
T ss_dssp SCSSSCEEEEEETTS-CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE-EEETTSBCEEEETTTTEE--EECCBC-
T ss_pred CCCCcceEEEEeCCC-eEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE-EEeCCCeEEEEECCCCce--EEEecC-
Confidence 7542 3445443333 677778776555544444455678899997655544 444556777777654332 221111
Q ss_pred CccceeeeeeCCeEEEEeCCCCcEEEEcccCCC
Q psy6570 160 GYKPYKLEVFEDNLYFSTYRTNNILKINKFGNS 192 (713)
Q Consensus 160 ~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~ 192 (713)
......+.+..+..+++....+.|...+...+.
T Consensus 602 ~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 602 NSVIHALCFSPNRYWLCAATEHGIKIWDLESKS 634 (694)
T ss_dssp SSCEEEEEECSSSSEEEEEETTEEEEEETTTTE
T ss_pred CCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCC
Confidence 112344454433222222233456666654443
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.87 E-value=2.6 Score=44.13 Aligned_cols=162 Identities=14% Similarity=0.084 Sum_probs=86.5
Q ss_pred cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCce-----------EEEEEcCCC------------CCcceEEE
Q psy6570 23 SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK-----------KRTLLNTGL------------NEPYDIAL 79 (713)
Q Consensus 23 ~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~-----------~~~l~~~~~------------~~p~~iav 79 (713)
........|++++.+..|.... ..+.|.+.+++... ....+.... .....|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~ 101 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGD----KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW 101 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEE----TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE
T ss_pred cccCcEEEEEECCCCCEEEEEc----CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE
Confidence 3345678899998766665544 36788888877543 122222222 45788999
Q ss_pred cCCC--CcEEEEccCCCCeEEEEecCCCCc----------------------------------------EEEEeCCCCC
Q psy6570 80 EPLS--GRMFWTELGIKPRISGASIDGKNK----------------------------------------FNLVDNNIQW 117 (713)
Q Consensus 80 D~~~--~~ly~td~~~~~~I~~~~~dG~~~----------------------------------------~~l~~~~~~~ 117 (713)
.|.. ..|+.+... . .|...+++.... +.+.......
T Consensus 102 ~~~~~~~~l~s~s~d-~-~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 179 (447)
T 3dw8_B 102 LPQKNAAQFLLSTND-K-TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH 179 (447)
T ss_dssp CCCCSSSEEEEEECS-S-CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred cCCCCcceEEEeCCC-C-eEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence 9865 344444332 2 344433332111 0111223345
Q ss_pred CeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCc-eeEEE-e----cCCCCccceeeeeeC-C-eEEEEeCCCCcEEEEccc
Q psy6570 118 PTGITIDYPSQRLYWADPKARTIESINLNGKD-RFVVY-H----TEDNGYKPYKLEVFE-D-NLYFSTYRTNNILKINKF 189 (713)
Q Consensus 118 p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~-~~~~~-~----~~~~~~~p~~i~~~~-~-~ly~td~~~~~i~~~~~~ 189 (713)
...|++++....|..+ ..+.|...++.... ...+. . ..........+++.. + .++++-...+.|..++..
T Consensus 180 v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 180 INSISINSDYETYLSA--DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR 257 (447)
T ss_dssp CCEEEECTTSSEEEEE--CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred eEEEEEcCCCCEEEEe--CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence 6789999876666655 47888888887322 22111 0 100112234555542 2 566665666777777765
Q ss_pred CCC
Q psy6570 190 GNS 192 (713)
Q Consensus 190 ~~~ 192 (713)
.+.
T Consensus 258 ~~~ 260 (447)
T 3dw8_B 258 ASA 260 (447)
T ss_dssp TCS
T ss_pred CCc
Confidence 544
|
| >3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A | Back alignment and structure |
|---|
Probab=93.81 E-value=0.038 Score=38.40 Aligned_cols=31 Identities=39% Similarity=0.985 Sum_probs=20.2
Q ss_pred CCCCCCeeecC-CCCCCeeecCCCcccCCccc
Q psy6570 314 LDCNHGTCEFD-DDFDPHCICQENFYGTYCEK 344 (713)
Q Consensus 314 ~~C~~~~C~~~-~~~~~~C~C~~g~~G~~C~~ 344 (713)
+.|.||+|... ....+.|.|++||+|..|+.
T Consensus 14 ~yC~nG~C~~~~~~~~~~C~C~~gy~G~RCe~ 45 (50)
T 3e50_C 14 QFCFHGTCRFLVQEDKPACVCHSGYVGARCEH 45 (50)
T ss_pred CcccCCEEeeccCCCCeEEECCCCCcccCCCc
Confidence 35777777652 23346777777777777764
|
| >2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.045 Score=38.10 Aligned_cols=30 Identities=30% Similarity=0.845 Sum_probs=18.2
Q ss_pred CCCCCCeeec-CCCCCCeeecCCCcccCCcc
Q psy6570 314 LDCNHGTCEF-DDDFDPHCICQENFYGTYCE 343 (713)
Q Consensus 314 ~~C~~~~C~~-~~~~~~~C~C~~g~~G~~C~ 343 (713)
+.|.||+|.. .....+.|.|++||+|..|+
T Consensus 18 ~yC~nG~C~~i~~~~~~~C~C~~gy~G~RCe 48 (50)
T 2rnl_A 18 NFCIHGECKYIEHLEAVTCKCQQEYFGERCG 48 (50)
T ss_dssp GTCSSSEEEEETTTTEEEEECCSSCCSSSCC
T ss_pred CcCCCCEEEEecCCCCeeEECCCCccccccc
Confidence 4566777763 33334567777777777665
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=93.75 E-value=7 Score=43.94 Aligned_cols=115 Identities=16% Similarity=0.213 Sum_probs=64.1
Q ss_pred ceEEEeccCCeEEEeecCCCCCCeEEEEec-CCceEEEEEcC-C----CCCcceEEEcCCCCcEEEEccCC----CCeEE
Q psy6570 29 RGVAVDWVGKNLYWTDAGGRSSNNIMVSTL-EGRKKRTLLNT-G----LNEPYDIALEPLSGRMFWTELGI----KPRIS 98 (713)
Q Consensus 29 ~gla~D~~~~~ly~td~~~~~~~~I~~~~~-~G~~~~~l~~~-~----~~~p~~iavD~~~~~ly~td~~~----~~~I~ 98 (713)
.+++++ +++||+... .++|+.++. +|+.+-.+-.. . .......+++ ++.||+..... .+.|+
T Consensus 122 ~~~a~~--~~~v~v~~~----dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~ 193 (677)
T 1kb0_A 122 RGVALW--KGKVYVGAW----DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYIT 193 (677)
T ss_dssp CCCEEE--TTEEEEECT----TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEE
T ss_pred CCceEE--CCEEEEEcC----CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEE
Confidence 567775 678888754 577888887 46554333322 1 0111122332 57788865431 23677
Q ss_pred EEecC-CCCcEEEEeCC-C---------------CCC---------------eeEEEeCCCCeEEEEcCCC---------
Q psy6570 99 GASID-GKNKFNLVDNN-I---------------QWP---------------TGITIDYPSQRLYWADPKA--------- 137 (713)
Q Consensus 99 ~~~~d-G~~~~~l~~~~-~---------------~~p---------------~glavd~~~~~LY~~d~~~--------- 137 (713)
.++.. |+.+-.+-... . .++ ..+++|+..++||+.....
T Consensus 194 a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~ 273 (677)
T 1kb0_A 194 AYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRS 273 (677)
T ss_dssp EEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHS
T ss_pred EEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCC
Confidence 77753 44333332111 0 011 3589999999999986432
Q ss_pred ---------CcEEEEeCCCCcee
Q psy6570 138 ---------RTIESINLNGKDRF 151 (713)
Q Consensus 138 ---------~~I~~~~~~g~~~~ 151 (713)
..|+.++.+.....
T Consensus 274 ~~~gd~~~~~sv~AlD~~TG~~~ 296 (677)
T 1kb0_A 274 PKGGDNLYLASIVALDPDTGKYK 296 (677)
T ss_dssp TTCCCCTTTTEEEEECTTTCCEE
T ss_pred ccCCCCeeeEEEEEEECCCCCEE
Confidence 25888887644433
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=93.72 E-value=1.5 Score=50.19 Aligned_cols=176 Identities=6% Similarity=-0.060 Sum_probs=94.8
Q ss_pred eeEEEccCc-ccEEecCCC-CCceEEEeccCCeEEEeecCCC-CCCeEEEEecCCce--EEEEEcCC-CCCcceEEEcCC
Q psy6570 9 VTRVKREMN-LKTVLSNLH-DPRGVAVDWVGKNLYWTDAGGR-SSNNIMVSTLEGRK--KRTLLNTG-LNEPYDIALEPL 82 (713)
Q Consensus 9 I~~~~~~~~-~~~~~~~~~-~p~gla~D~~~~~ly~td~~~~-~~~~I~~~~~~G~~--~~~l~~~~-~~~p~~iavD~~ 82 (713)
|+.+++++. ..+. ..+. ...++++.+.++.||++..... ...+|++.++++.. .+.+.... -..-.++++.+.
T Consensus 203 l~v~dl~~g~~~l~-~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpD 281 (751)
T 2xe4_A 203 IEFKRISDPSQTIA-DKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAAD 281 (751)
T ss_dssp EEEEETTCTTCCCC-CCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTT
T ss_pred EEEEECCCCCEeCC-ccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCC
Confidence 777777665 3111 1111 1346777777777887754211 12479999998753 23343322 122346778887
Q ss_pred CCcEEEEccC-CCCeEEEEecCCCC--c--EEEEeCCCCCCeeEEEe-CCCCeEEEEc-C---CCCcEEEEeCCC-Ccee
Q psy6570 83 SGRMFWTELG-IKPRISGASIDGKN--K--FNLVDNNIQWPTGITID-YPSQRLYWAD-P---KARTIESINLNG-KDRF 151 (713)
Q Consensus 83 ~~~ly~td~~-~~~~I~~~~~dG~~--~--~~l~~~~~~~p~glavd-~~~~~LY~~d-~---~~~~I~~~~~~g-~~~~ 151 (713)
.++|+|+.+. ....|+.+++++.. . +.++. ....+ -..++ ..+++|||.. . ...+|+++++++ ...+
T Consensus 282 g~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-~~~~~-~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~ 359 (751)
T 2xe4_A 282 TNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP-REKGV-RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWS 359 (751)
T ss_dssp SSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC-CCTTC-CEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCC
T ss_pred CCEEEEEecCCCCceEEEEECCCCCCCceeEEeec-CCCCc-eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccce
Confidence 7788887543 34479999998652 2 33322 21111 12233 3477777763 2 356899999874 3323
Q ss_pred E-EEecCCCCccceeeeeeCCeEEEEeCC--CCcEEEEcc
Q psy6570 152 V-VYHTEDNGYKPYKLEVFEDNLYFSTYR--TNNILKINK 188 (713)
Q Consensus 152 ~-~~~~~~~~~~p~~i~~~~~~ly~td~~--~~~i~~~~~ 188 (713)
. ++.... .....++++++++||++... ...|+.++.
T Consensus 360 ~~li~~~~-~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 360 HVLVDHSE-DVFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp CEEECCCS-SEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred eeEECCCC-CcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 2 332211 11234566677888776543 234555553
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=93.71 E-value=5.2 Score=40.91 Aligned_cols=174 Identities=11% Similarity=0.069 Sum_probs=91.4
Q ss_pred CceeEEEccCcccEE-ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEe-cCCceEEEEEcCC-CCCcceEEEcCCC
Q psy6570 7 GNVTRVKREMNLKTV-LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVST-LEGRKKRTLLNTG-LNEPYDIALEPLS 83 (713)
Q Consensus 7 ~~I~~~~~~~~~~~~-~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~-~~G~~~~~l~~~~-~~~p~~iavD~~~ 83 (713)
+.|...++.....+. +..-..+.+|+|.+.+..|..+ . . +.+.+.. .+|.......... -.....+++.|.+
T Consensus 157 ~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~-s---~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg 231 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYI-T---G-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADD 231 (365)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEE-C---S-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT
T ss_pred CEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEec-c---c-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC
Confidence 445555655433222 3344567899999876655443 3 2 3344444 4454443332221 2346678888866
Q ss_pred CcEEEEccCCC--CeEEEEecCCCCcEE----EEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCce-eEEEec
Q psy6570 84 GRMFWTELGIK--PRISGASIDGKNKFN----LVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDR-FVVYHT 156 (713)
Q Consensus 84 ~~ly~td~~~~--~~I~~~~~dG~~~~~----l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~-~~~~~~ 156 (713)
..|..+..... ..|+..++....... .+.......+.|+++|++.+|..+. ..+.|...++..... ..+...
T Consensus 232 ~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs-~D~~V~iwd~~~~~~~~~~~~g 310 (365)
T 4h5i_A 232 TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS-NDNSIALVKLKDLSMSKIFKQA 310 (365)
T ss_dssp EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE-TTSCEEEEETTTTEEEEEETTS
T ss_pred CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc-CCCEEEEEECCCCcEEEEecCc
Confidence 55555433222 134444443332221 1223444567899998766665554 456788888754332 222221
Q ss_pred CCCCccceeeeee-CCeEEEEeCCCCcEEEEcc
Q psy6570 157 EDNGYKPYKLEVF-EDNLYFSTYRTNNILKINK 188 (713)
Q Consensus 157 ~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~ 188 (713)
......+|++. ++.++++-...+.|+.++.
T Consensus 311 --H~~~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 311 --HSFAITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp --SSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred --ccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 12233566665 4566666666777776664
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=3.2 Score=50.40 Aligned_cols=136 Identities=8% Similarity=-0.074 Sum_probs=82.1
Q ss_pred CCceeEEEccCcccEE--ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCC
Q psy6570 6 SGNVTRVKREMNLKTV--LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLS 83 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~--~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~ 83 (713)
++.|...+..+...+. ......+..|++.+.++.|..+. ..+.|.+.++........+.........+++.+..
T Consensus 636 d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 711 (1249)
T 3sfz_A 636 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCS----ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKS 711 (1249)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS
T ss_pred CCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEe----CCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCC
Confidence 4566666665543222 22344567899988766665443 46789999987544433333444567788888753
Q ss_pred C-cEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC
Q psy6570 84 G-RMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNG 147 (713)
Q Consensus 84 ~-~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g 147 (713)
. .++++..... .|...+++.......+.........+++++.+..|+.+. ..+.|...++..
T Consensus 712 ~~~~l~sg~~d~-~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~dg~v~vwd~~~ 774 (1249)
T 3sfz_A 712 NHLLLATGSNDF-FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS-ADGTLRLWDVRS 774 (1249)
T ss_dssp SCCEEEEEETTS-CEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEE-SSSEEEEEEGGG
T ss_pred CceEEEEEeCCC-eEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEE-CCCeEEEEeCCC
Confidence 3 3444433333 688888776555444444455678899998666555443 456677766644
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=93.62 E-value=3.8 Score=40.33 Aligned_cols=115 Identities=10% Similarity=0.055 Sum_probs=65.3
Q ss_pred CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCc---eEEEEEcCCCCCcceEEEcCC-CCcEEEEccCCCCeEEEEec
Q psy6570 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR---KKRTLLNTGLNEPYDIALEPL-SGRMFWTELGIKPRISGASI 102 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~---~~~~l~~~~~~~p~~iavD~~-~~~ly~td~~~~~~I~~~~~ 102 (713)
....+++++.++.|. +-. ..+.|.+.++++. ...++. .-......|++.+. .+.++.+-.... .|..-++
T Consensus 11 ~V~~~~~s~~g~~la-s~s---~D~~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l~s~s~D~-~v~iWd~ 84 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMA-TCS---SDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDG-KVMIWKE 84 (297)
T ss_dssp CEEEEEECTTSSEEE-EEE---TTSCEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETTT-EEEEEEB
T ss_pred ceEEEEECCCCCEEE-EEe---CCCEEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEEEEEcCCC-EEEEEEc
Confidence 456789998766555 444 4678888888643 223332 22245667888643 356666554433 6666666
Q ss_pred CCCC--cEEEEeCCCCCCeeEEEeCCC-CeEEEEcCCCCcEEEEeCCC
Q psy6570 103 DGKN--KFNLVDNNIQWPTGITIDYPS-QRLYWADPKARTIESINLNG 147 (713)
Q Consensus 103 dG~~--~~~l~~~~~~~p~glavd~~~-~~LY~~d~~~~~I~~~~~~g 147 (713)
.... ....+.........|++.+.. +.++++-...+.|...++..
T Consensus 85 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~ 132 (297)
T 2pm7_B 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE 132 (297)
T ss_dssp SSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred CCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecC
Confidence 5432 222222233456788998752 44444444566777777654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.59 E-value=2.6 Score=44.15 Aligned_cols=165 Identities=9% Similarity=-0.003 Sum_probs=84.5
Q ss_pred CCCCceEEEeccCCeEEEeecCCCCCCeEEEEec----CCceEEEEEcC-----------CCCCcceEE--EcCCCCcEE
Q psy6570 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTL----EGRKKRTLLNT-----------GLNEPYDIA--LEPLSGRMF 87 (713)
Q Consensus 25 ~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~----~G~~~~~l~~~-----------~~~~p~~ia--vD~~~~~ly 87 (713)
...+..|++.+.+..|+.+ . ..+.|.+.++ .|+..+.+... .......++ ..+ ++.++
T Consensus 111 ~~~v~~~~~~~~~~~l~s~-s---~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 185 (437)
T 3gre_A 111 SSTVTQITMIPNFDAFAVS-S---KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLL 185 (437)
T ss_dssp SSCEEEEEECTTSSEEEEE-E---TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEE
T ss_pred CCCEEEEEEeCCCCEEEEE-e---CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEE
Confidence 4456788888765555544 3 4577777766 34433322111 111222233 222 34444
Q ss_pred EEccCCCCeEEEEecCCCCcEEEEeC--CCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCcccee
Q psy6570 88 WTELGIKPRISGASIDGKNKFNLVDN--NIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYK 165 (713)
Q Consensus 88 ~td~~~~~~I~~~~~dG~~~~~l~~~--~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~ 165 (713)
++-.... .|...++........+.. .......|++++....|+.+. ..+.|...++............. ......
T Consensus 186 ~~~~~d~-~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~ 262 (437)
T 3gre_A 186 VALTNLS-RVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT-TRGIIDIWDIRFNVLIRSWSFGD-HAPITH 262 (437)
T ss_dssp EEEETTS-EEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE-TTSCEEEEETTTTEEEEEEBCTT-CEEEEE
T ss_pred EEEeCCC-eEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc-CCCeEEEEEcCCccEEEEEecCC-CCceEE
Confidence 4443333 788888865554444443 345678999998766665554 45678888876533222221111 112233
Q ss_pred eee----e-CCeEEEEeCCCCcEEEEcccCCCcceee
Q psy6570 166 LEV----F-EDNLYFSTYRTNNILKINKFGNSDFNVL 197 (713)
Q Consensus 166 i~~----~-~~~ly~td~~~~~i~~~~~~~~~~~~~~ 197 (713)
+.+ . ++.++++....+.|..++...+.....+
T Consensus 263 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 299 (437)
T 3gre_A 263 VEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAF 299 (437)
T ss_dssp EEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEE
T ss_pred EEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEE
Confidence 422 1 2345555556666777776555443333
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.21 Score=57.00 Aligned_cols=123 Identities=13% Similarity=0.103 Sum_probs=79.7
Q ss_pred cCCceeEEEccCccc-EEecCCC----CCceEEEeccCCeEEEeecCC-----CCCCeEEEEecCCceE---EEEEcCCC
Q psy6570 5 SSGNVTRVKREMNLK-TVLSNLH----DPRGVAVDWVGKNLYWTDAGG-----RSSNNIMVSTLEGRKK---RTLLNTGL 71 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~-~~~~~~~----~p~gla~D~~~~~ly~td~~~-----~~~~~I~~~~~~G~~~---~~l~~~~~ 71 (713)
.++.|+.++..+... .+..... ....+++.+.++.|+++.... .....|.+.++++... +.+.
T Consensus 34 ~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~---- 109 (719)
T 1z68_A 34 ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP---- 109 (719)
T ss_dssp TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC----
T ss_pred CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC----
Confidence 367788888877543 3332221 378899999888887654310 0136799999887654 2221
Q ss_pred CCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCC------------------CCCeeEEEeCCCCeEEEE
Q psy6570 72 NEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNI------------------QWPTGITIDYPSQRLYWA 133 (713)
Q Consensus 72 ~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~------------------~~p~glavd~~~~~LY~~ 133 (713)
.....+++.|..++|.++.. + .|++.++++...+.+..... ....++++.|++++|+++
T Consensus 110 ~~~~~~~~SPDG~~la~~~~--~-~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~ 186 (719)
T 1z68_A 110 RPIQYLCWSPVGSKLAYVYQ--N-NIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYA 186 (719)
T ss_dssp SSBCCEEECSSTTCEEEEET--T-EEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEE
T ss_pred cccccceECCCCCEEEEEEC--C-eEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEE
Confidence 34677999998888877742 3 78888887665554432111 222589999998888876
Q ss_pred c
Q psy6570 134 D 134 (713)
Q Consensus 134 d 134 (713)
.
T Consensus 187 ~ 187 (719)
T 1z68_A 187 E 187 (719)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.033 Score=42.01 Aligned_cols=36 Identities=36% Similarity=0.707 Sum_probs=25.3
Q ss_pred CCCCCCC--CCCCCcEEeecCC-CceeeCCCCCc----CCCCCcC
Q psy6570 552 ANKCTPN--YCSNNGTCVLIEG-KPSCKCLPPYS----GKQCTER 589 (713)
Q Consensus 552 ~~~C~~~--~C~~~~~C~~~~g-~~~C~C~~G~~----G~~C~~~ 589 (713)
+++|..+ .|+ ..|+++.| +|+|.|++||. |+.|.++
T Consensus 5 ~~eC~~~nggC~--h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d~ 47 (69)
T 1kli_L 5 QLICVNENGGCE--QYCSDHTGTKRSCRCHEGYSLLADGVSCTPT 47 (69)
T ss_dssp CCCTTSGGGGCS--SEEEEETTTEEEEECCTTEEECTTSSCEEEC
T ss_pred cccccCCCCCcC--CEeEcCCCCCEEEeCCCCCeECCCCCcccCc
Confidence 5666533 353 36888888 78899999986 5677665
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.45 E-value=4.8 Score=45.31 Aligned_cols=162 Identities=9% Similarity=-0.015 Sum_probs=91.9
Q ss_pred CCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCce------EEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEE
Q psy6570 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK------KRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRIS 98 (713)
Q Consensus 25 ~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~------~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~ 98 (713)
......|++.+.+..++++-+ ..+.|.+.+++... .+.+. ........|++.+...+| ++-.... .|.
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s---~D~~i~~W~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l-~sgs~Dg-~v~ 455 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSAS---RDKSIILWKLTKDDKAYGVAQRRLT-GHSHFVEDVVLSSDGQFA-LSGSWDG-ELR 455 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEE---TTSEEEEEECCCSTTCSCEEEEEEE-CCSSCEEEEEECTTSSEE-EEEETTS-EEE
T ss_pred CceeEEEEecCCCCCEEEEEe---CCCcEEEEEccCCCcccccccceec-CCCCcEEEEEECCCCCEE-EEEeCCC-cEE
Confidence 344567888776667777776 57788888875421 22222 333567789999755444 4443333 677
Q ss_pred EEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCC-ccceeeeeeC---CeEE
Q psy6570 99 GASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNG-YKPYKLEVFE---DNLY 174 (713)
Q Consensus 99 ~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~-~~p~~i~~~~---~~ly 174 (713)
.-++........+.........|++++.+.+|+.+ ...+.|...+..+.....+....... .....+++.. ..++
T Consensus 456 vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 534 (694)
T 3dm0_A 456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSA-SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI 534 (694)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEE-ETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred EEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEE-eCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence 77776544433344445556889999876666544 44567777777665444443221111 1123344432 1345
Q ss_pred EEeCCCCcEEEEcccCCCc
Q psy6570 175 FSTYRTNNILKINKFGNSD 193 (713)
Q Consensus 175 ~td~~~~~i~~~~~~~~~~ 193 (713)
++-...+.|...+......
T Consensus 535 ~s~s~d~~v~vwd~~~~~~ 553 (694)
T 3dm0_A 535 VSASWDKTVKVWNLSNCKL 553 (694)
T ss_dssp EEEETTSCEEEEETTTCCE
T ss_pred EEEeCCCeEEEEECCCCcE
Confidence 5555566676666554433
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.40 E-value=3.1 Score=41.95 Aligned_cols=115 Identities=10% Similarity=-0.018 Sum_probs=62.8
Q ss_pred CCcceEEEcC--CCCcEEEEccCCCCeEEEEecCCCCcEEEEeCC-CCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCC
Q psy6570 72 NEPYDIALEP--LSGRMFWTELGIKPRISGASIDGKNKFNLVDNN-IQWPTGITIDYPSQRLYWADPKARTIESINLNGK 148 (713)
Q Consensus 72 ~~p~~iavD~--~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~-~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~ 148 (713)
.....|+++| .+ .++++-.... .|...++.......+.... ......+++++.+. ++.+-...+.|...++...
T Consensus 126 ~~v~~~~~~~~~~~-~~l~s~s~dg-~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 126 NEIIYMYGHNEVNT-EYFIWADNRG-TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-LLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp SCEEEEECCC---C-CEEEEEETTC-CEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-EEEEECTTSCEEEEESSCT
T ss_pred CCEEEEEcCCCCCC-CEEEEEeCCC-cEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCC
Confidence 4577899987 44 4444433333 6888887765554443222 22467899997554 4444456678888888655
Q ss_pred cee-EEEecCCCCccceeeeee--CCeEEEEeCCCCcEEEEcccCCC
Q psy6570 149 DRF-VVYHTEDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKFGNS 192 (713)
Q Consensus 149 ~~~-~~~~~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~ 192 (713)
... ..+... .......|++. +.+|..+. .+.|...+.....
T Consensus 203 ~~~~~~~~~~-h~~~v~~l~fs~~g~~l~s~~--~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 203 DQASSRFPVD-EEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKDV 246 (343)
T ss_dssp TSCCEECCCC-TTSCEEEEEECTTSSEEEEEE--SSBEEEEETTSST
T ss_pred CCCccEEecc-CCCCEEEEEEeCCCCEEEEEe--CCeEEEEEcCCCC
Confidence 433 222210 12233455554 33444443 3377777765443
|
| >1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A | Back alignment and structure |
|---|
Probab=93.37 E-value=0.041 Score=38.40 Aligned_cols=31 Identities=35% Similarity=0.997 Sum_probs=19.7
Q ss_pred CCCCCCeeec-CCCCCCeeecCCCcccCCccc
Q psy6570 314 LDCNHGTCEF-DDDFDPHCICQENFYGTYCEK 344 (713)
Q Consensus 314 ~~C~~~~C~~-~~~~~~~C~C~~g~~G~~C~~ 344 (713)
+.|.||+|.. .....+.|.|++||+|..|+.
T Consensus 14 ~yC~nG~C~~~~~~~~~~C~C~~gy~G~RCe~ 45 (50)
T 1iox_A 14 HYCIKGRCRFVVAEQTPSCVCDEGYIGARCER 45 (50)
T ss_dssp TSCTTCCEEEETTTTEEEECCCTTEETTTTCE
T ss_pred CcccCCEEEeEcCCCCeEEECCCCcccCCCCe
Confidence 3467777753 333346777777777777764
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=3.2 Score=47.76 Aligned_cols=151 Identities=10% Similarity=0.008 Sum_probs=87.0
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcC------C--CCCcceEEEcCCCCc-EEEEccCCCCeEE
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNT------G--LNEPYDIALEPLSGR-MFWTELGIKPRIS 98 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~------~--~~~p~~iavD~~~~~-ly~td~~~~~~I~ 98 (713)
..+|+.|. .+.||+.-. .+-|.+++.+....+.+... . ......|+.|+ ++. ||+...+ . .|.
T Consensus 359 V~~i~~d~-~g~lWiGt~----~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~-~-Gl~ 430 (795)
T 4a2l_A 359 VSCIVEDK-DKNLWIGTN----DGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHA-G-GLS 430 (795)
T ss_dssp EEEEEECT-TSCEEEEES----SSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETT-T-EEE
T ss_pred eEEEEECC-CCCEEEEEC----CCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCc-C-cee
Confidence 56777885 467776543 44688888765444333211 1 24567899985 677 6665432 3 588
Q ss_pred EEecCCCCcEEEEeC----CCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEec----CCCCccceeeeee-
Q psy6570 99 GASIDGKNKFNLVDN----NIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHT----EDNGYKPYKLEVF- 169 (713)
Q Consensus 99 ~~~~dG~~~~~l~~~----~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~----~~~~~~p~~i~~~- 169 (713)
+++.+....+.+... .......|+.|. .++|+++.. .-|.+++.+....+.+... .........|..+
T Consensus 431 ~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~ 507 (795)
T 4a2l_A 431 ILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS 507 (795)
T ss_dssp EEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT
T ss_pred EEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEEEec--CceeEEeCCCCeEEEccccccccccCCceEEEEEECC
Confidence 888776544444221 123456788884 678888765 4688888765443333211 0011223455555
Q ss_pred CCeEEEEeCCCCcEEEEcccCC
Q psy6570 170 EDNLYFSTYRTNNILKINKFGN 191 (713)
Q Consensus 170 ~~~ly~td~~~~~i~~~~~~~~ 191 (713)
++.||+... +.|++++..+.
T Consensus 508 ~g~lWigt~--~Gl~~~~~~~~ 527 (795)
T 4a2l_A 508 HKRLWIGGE--EGLSVFKQEGL 527 (795)
T ss_dssp TCCEEEEES--SCEEEEEEETT
T ss_pred CCCEEEEeC--CceEEEeCCCC
Confidence 456776654 56888876543
|
| >1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ... | Back alignment and structure |
|---|
Probab=93.09 E-value=0.027 Score=61.54 Aligned_cols=35 Identities=37% Similarity=0.900 Sum_probs=32.1
Q ss_pred cCCCCCCCCCcEecc-CCCCccccCC-CCCcCCCCcc
Q psy6570 417 QCLNLKCQNGGVCVN-KTTGLECDCP-KFYYGKNCQY 451 (713)
Q Consensus 417 ~C~~~~C~~~~~C~~-~~~~~~C~C~-~G~~g~~C~~ 451 (713)
+|.+.||.++|+|.+ ..++|.|.|+ +||+|..|+.
T Consensus 4 ~C~~~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~ 40 (553)
T 1q4g_A 4 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40 (553)
T ss_dssp GGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTCE
T ss_pred cCCCCCCCCCCCcCCCCCCceEeeCCCCCcCCCCCCC
Confidence 578899999999999 8889999999 9999999984
|
| >1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=92.93 E-value=0.038 Score=38.87 Aligned_cols=28 Identities=21% Similarity=0.629 Sum_probs=21.0
Q ss_pred cEeccCCCCccccCCCCCc----CCCCc-cCCC
Q psy6570 427 GVCVNKTTGLECDCPKFYY----GKNCQ-YSQC 454 (713)
Q Consensus 427 ~~C~~~~~~~~C~C~~G~~----g~~C~-~~~C 454 (713)
..|+++.++|+|.|++||. +..|+ ++++
T Consensus 10 ~~C~n~~gs~~C~C~~Gy~L~~d~~tC~dide~ 42 (51)
T 1kig_L 10 QFCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42 (51)
T ss_dssp SCCCEETTEECCCCCTTEEECTTSSCEEECSSS
T ss_pred CEeEcCCCCeEEeCCCCcEECCCCCccccCCcc
Confidence 3688888999999999996 55665 4443
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.86 E-value=3.4 Score=48.31 Aligned_cols=176 Identities=11% Similarity=0.010 Sum_probs=98.1
Q ss_pred CCceeEEEccCcccEE-ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCce-EEEEEcCCCCCcceEEEcCCC
Q psy6570 6 SGNVTRVKREMNLKTV-LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK-KRTLLNTGLNEPYDIALEPLS 83 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~-~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~-~~~l~~~~~~~p~~iavD~~~ 83 (713)
++.|...+..+..... ...-.....|+|.+ +..|+ +-. ..+.|.+.+++... ...+. . -.....|+++|..
T Consensus 38 Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~-S~s---~D~~v~lWd~~~~~~~~~~~-~-~~~V~~v~~sp~g 110 (902)
T 2oaj_A 38 TGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLV-VIN---AKDTVYVLSLYSQKVLTTVF-V-PGKITSIDTDASL 110 (902)
T ss_dssp TSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEE-EEE---TTCEEEEEETTTCSEEEEEE-C-SSCEEEEECCTTC
T ss_pred CCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEE-EEE---CcCeEEEEECCCCcEEEEEc-C-CCCEEEEEECCCC
Confidence 4455555554432222 22233467899988 44344 434 46889999986543 33443 2 2467889999877
Q ss_pred CcEEEEccCCCCeEEEEecCCCCcEEEE-----------eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeE
Q psy6570 84 GRMFWTELGIKPRISGASIDGKNKFNLV-----------DNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFV 152 (713)
Q Consensus 84 ~~ly~td~~~~~~I~~~~~dG~~~~~l~-----------~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~ 152 (713)
.+|+..... . .|...++++.....+. .........|+++|.+..++.+-...+.| ..++.......
T Consensus 111 ~~l~sgs~d-g-~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~ 187 (902)
T 2oaj_A 111 DWMLIGLQN-G-SMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQ 187 (902)
T ss_dssp SEEEEEETT-S-CEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEE
T ss_pred CEEEEEcCC-C-cEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEE
Confidence 777776543 2 5777787765432111 11234567899998655555555556677 77776543322
Q ss_pred EEecC----------------CCCccceeeeee-CCeEEEEeCCCCcEEEEcccCC
Q psy6570 153 VYHTE----------------DNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGN 191 (713)
Q Consensus 153 ~~~~~----------------~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~ 191 (713)
.+... ........+++. ++.++++-...+.|...+...+
T Consensus 188 ~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 188 SFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp EECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred EEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 22211 000123455554 3455556556667777765444
|
| >3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ... | Back alignment and structure |
|---|
Probab=92.71 E-value=0.053 Score=59.29 Aligned_cols=36 Identities=31% Similarity=0.767 Sum_probs=30.8
Q ss_pred CCC-CCCCCCCCeEecCCCCcceeecC-CCcccCCCCc
Q psy6570 593 PSC-HNYCDNAGLCSYSKQGKPVCTCV-NGWSGITCSE 628 (713)
Q Consensus 593 ~~C-~~~C~~~g~C~~~~~g~~~C~C~-~G~~G~~C~~ 628 (713)
++| .++|.|+|+|.+...++|.|.|+ +||+|..|+.
T Consensus 2 d~C~s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~ 39 (587)
T 3nt1_A 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39 (587)
T ss_dssp CTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTCE
T ss_pred CCCCCCCCCCCCEeeCCCCCCeEEecCCCCccCCCCCC
Confidence 567 78999999999643378999999 9999999985
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=92.53 E-value=5.3 Score=48.47 Aligned_cols=159 Identities=10% Similarity=-0.034 Sum_probs=95.3
Q ss_pred CCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCC
Q psy6570 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDG 104 (713)
Q Consensus 25 ~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG 104 (713)
......+++.+.+..|+... ..+.|.+.++........+......+..|++.|.+.+|.... ... .|...++..
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~----~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~d~-~v~vwd~~~ 688 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCG----ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCS-ADK-KVKIWDSAT 688 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTS-EEEEEETTT
T ss_pred cccEEEEEECCCCCEEEEEe----CCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEe-CCC-eEEEEECCC
Confidence 44567889998766665443 467899988866544433434446788999998655555544 333 688888775
Q ss_pred CCcEEEEeCCCCCCeeEEEeCCCC-eEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeee-CCeEEEEeCCCCc
Q psy6570 105 KNKFNLVDNNIQWPTGITIDYPSQ-RLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNN 182 (713)
Q Consensus 105 ~~~~~l~~~~~~~p~glavd~~~~-~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~ 182 (713)
......+.........+++.+..+ .++++-...+.|...++............ ......+++. ++.++++....+.
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h--~~~v~~~~~sp~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH--TNSVNHCRFSPDDELLASCSADGT 766 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCC--SSCEEEEEECSSTTEEEEEESSSE
T ss_pred CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCC--CCCEEEEEEecCCCEEEEEECCCe
Confidence 554444444555667888987543 34445556677888887655433322221 2233445544 3345555555667
Q ss_pred EEEEcccCC
Q psy6570 183 ILKINKFGN 191 (713)
Q Consensus 183 i~~~~~~~~ 191 (713)
|..++...+
T Consensus 767 v~vwd~~~~ 775 (1249)
T 3sfz_A 767 LRLWDVRSA 775 (1249)
T ss_dssp EEEEEGGGT
T ss_pred EEEEeCCCC
Confidence 777765544
|
| >2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=0.063 Score=52.82 Aligned_cols=60 Identities=28% Similarity=0.645 Sum_probs=42.9
Q ss_pred CCCCcEEeecCCCceeeCCCCCcCCCCCcCCCCC-------CCC-----CCCCCCCeEecCCCCcceeecCCCc------
Q psy6570 560 CSNNGTCVLIEGKPSCKCLPPYSGKQCTEREDSP-------SCH-----NYCDNAGLCSYSKQGKPVCTCVNGW------ 621 (713)
Q Consensus 560 C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~~~~~-------~C~-----~~C~~~g~C~~~~~g~~~C~C~~G~------ 621 (713)
|+.+|+|. -..|.|.+||+|..|+-..+.. .|. ..|+++|.|... +|.|.+++
T Consensus 198 C~g~G~~~----CG~C~C~~g~~G~~CeC~~~~~~~~~~~~~C~~~~~~~~CSgrG~C~CG-----~C~C~~~~~~~~~~ 268 (280)
T 2p26_A 198 CHGKGFLE----CGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCG-----QCLCHTSDVPGKLI 268 (280)
T ss_dssp GGGSEEEE----TTEEEECTTEESTTSCEECTTSCHHHHHHTTCSSTTSCGGGGSEEEETT-----EEEECCCSSTTCEE
T ss_pred cCCCCeEC----CCceeCCCCCcCCcceecCCccccccccccCCCCCCCCccCCCceEeCC-----eeECcCCCCCCeeE
Confidence 66778887 3479999999999997432211 573 259999999864 49998775
Q ss_pred ccCCCCc
Q psy6570 622 SGITCSE 628 (713)
Q Consensus 622 ~G~~C~~ 628 (713)
.|..|+.
T Consensus 269 ~G~~~~~ 275 (280)
T 2p26_A 269 YGQYCEH 275 (280)
T ss_dssp ESTTSCE
T ss_pred eeEeccc
Confidence 5667653
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=92.46 E-value=6.2 Score=44.34 Aligned_cols=75 Identities=4% Similarity=-0.038 Sum_probs=41.4
Q ss_pred eeEEEeCCCCeEEEEcC-----------------------------------CCCcEEEEeCCCCceeEEEecCCCCccc
Q psy6570 119 TGITIDYPSQRLYWADP-----------------------------------KARTIESINLNGKDRFVVYHTEDNGYKP 163 (713)
Q Consensus 119 ~glavd~~~~~LY~~d~-----------------------------------~~~~I~~~~~~g~~~~~~~~~~~~~~~p 163 (713)
.++++|+.++.+|+... ..+.|..+|+......--..... ....
T Consensus 384 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~ 462 (668)
T 1kv9_A 384 HSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNG 462 (668)
T ss_dssp SCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCC
T ss_pred CcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcC
Confidence 45899999999998421 11457777764433221111111 1112
Q ss_pred eeeeeeCCeEEEEeCCCCcEEEEcccCCCcce
Q psy6570 164 YKLEVFEDNLYFSTYRTNNILKINKFGNSDFN 195 (713)
Q Consensus 164 ~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~ 195 (713)
..++..++.||+.+ ..+.|+.++...+..+.
T Consensus 463 ~~~~t~gg~vf~g~-~dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 463 GTLSTAGNLVFQGT-AAGQMHAYSADKGEALW 493 (668)
T ss_dssp CEEEETTTEEEEEC-TTSEEEEEETTTCCEEE
T ss_pred ceeEeCCCEEEEEC-CcccchhhhhhcChhhe
Confidence 23455677777763 45677777766555443
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=92.45 E-value=9.8 Score=38.19 Aligned_cols=116 Identities=10% Similarity=0.042 Sum_probs=67.3
Q ss_pred CCceEEE-----eccCCeEEEeecCCCCCCeEEEEecCCce-------EEEEEcCCCCCcceEEEcCCCCcEEEEccCCC
Q psy6570 27 DPRGVAV-----DWVGKNLYWTDAGGRSSNNIMVSTLEGRK-------KRTLLNTGLNEPYDIALEPLSGRMFWTELGIK 94 (713)
Q Consensus 27 ~p~gla~-----D~~~~~ly~td~~~~~~~~I~~~~~~G~~-------~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~ 94 (713)
....|++ .+..+.++++-. ..+.|.+.++.... ....+.........|++.|... ++++-....
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs---~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~-~l~s~s~D~ 98 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGS---RDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC-FAISSSWDK 98 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEE---TTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT-EEEEEETTS
T ss_pred hhhheeeEEEeecCCCCCEEEEEc---CCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC-EEEEEcCCC
Confidence 3466777 332455666665 56778777765321 1122222235577899987544 444443333
Q ss_pred CeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCC
Q psy6570 95 PRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGK 148 (713)
Q Consensus 95 ~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~ 148 (713)
.|..-++........+.........|++++.+.+|+.+. ..+.|...++.+.
T Consensus 99 -~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~-~d~~i~~wd~~~~ 150 (343)
T 2xzm_R 99 -TLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAG-AEREIKLWNILGE 150 (343)
T ss_dssp -EEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEE-TTSCEEEEESSSC
T ss_pred -cEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEc-CCCEEEEEeccCC
Confidence 677777764443333333445668899998777666554 4566777777643
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=92.44 E-value=11 Score=38.97 Aligned_cols=159 Identities=11% Similarity=-0.000 Sum_probs=87.4
Q ss_pred CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceE----EEEEcCCCCCcceEEEcCCCCcEEEEccC-CCCeEEEEe
Q psy6570 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKK----RTLLNTGLNEPYDIALEPLSGRMFWTELG-IKPRISGAS 101 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~----~~l~~~~~~~p~~iavD~~~~~ly~td~~-~~~~I~~~~ 101 (713)
...++.+.+.+..|+ +-. ..+.|.+.+...... .............+++.|....++.+-.+ ....|...+
T Consensus 232 ~~~~~~~~~~g~~l~-s~~---~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd 307 (420)
T 4gga_A 232 EVCGLRWAPDGRHLA-SGG---NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 307 (420)
T ss_dssp CEEEEEECTTSSEEE-EEE---TTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEE
T ss_pred ceeeeeecCCCCeee-eee---ccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEe
Confidence 345555555444343 333 345566655542211 11111223456678888888887776433 233677777
Q ss_pred cCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcC-CCCcEEEEeCCCCceeEEEecCCCCccceeeeee-CCeEEEEeCC
Q psy6570 102 IDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADP-KARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYR 179 (713)
Q Consensus 102 ~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~-~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~ 179 (713)
+........+. .......+++.+..+.|+.+.. ..+.|...++........+.. ....-..|++. ++.++++-..
T Consensus 308 ~~t~~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g--H~~~V~~l~~spdg~~l~S~s~ 384 (420)
T 4gga_A 308 VCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGATVASAAA 384 (420)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSCEEEEET
T ss_pred CCccccceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEec
Confidence 76544433333 3345678889988888887753 567788888764433222222 12233556654 3445566556
Q ss_pred CCcEEEEcccCCC
Q psy6570 180 TNNILKINKFGNS 192 (713)
Q Consensus 180 ~~~i~~~~~~~~~ 192 (713)
.+.|+..+.+...
T Consensus 385 D~tvriWdv~~~~ 397 (420)
T 4gga_A 385 DETLRLWRCFELD 397 (420)
T ss_dssp TTEEEEECCSCSS
T ss_pred CCeEEEEECCCCC
Confidence 6777777665443
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=92.43 E-value=1 Score=46.18 Aligned_cols=154 Identities=8% Similarity=-0.003 Sum_probs=80.3
Q ss_pred CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCce--EEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecC
Q psy6570 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK--KRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASID 103 (713)
Q Consensus 26 ~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~--~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~d 103 (713)
.....|++.+.++.|+ +-. ..+.|.+.++++.. ....+.........|++.|...+|+..... . .|...+++
T Consensus 12 ~~v~~~~~s~~g~~l~-~~~---~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-~-~v~vwd~~ 85 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFV-TTT---ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD-R-NAYVYEKR 85 (377)
T ss_dssp SCCSCCEECSSSSEEE-CCC---SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT-S-SEEEC---
T ss_pred CcEEEEEECCCCCEEE-Eec---CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC-C-eEEEEEcC
Confidence 4577889988655554 433 35677777776542 222222223557889999876666555433 2 56666665
Q ss_pred CCC---cEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCc----eeEEEecCCCCccceeeeee-CCeEEE
Q psy6570 104 GKN---KFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKD----RFVVYHTEDNGYKPYKLEVF-EDNLYF 175 (713)
Q Consensus 104 G~~---~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~----~~~~~~~~~~~~~p~~i~~~-~~~ly~ 175 (713)
... ....+.........|++++....|+.+. ..+.|...+++... ...+... .......|++. ++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~ 162 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGS-GARVISVCYFEQENDWWVSKHLKRP--LRSTILSLDWHPNNVLLA 162 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEE-SSSCEEECCC-----CCCCEEECSS--CCSCEEEEEECTTSSEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCEEEEEe-cCCeEEEEEECCcccceeeeEeecc--cCCCeEEEEEcCCCCEEE
Confidence 443 2222223344567899998766666655 35667777776543 2233221 12233455554 334444
Q ss_pred EeCCCCcEEEEcc
Q psy6570 176 STYRTNNILKINK 188 (713)
Q Consensus 176 td~~~~~i~~~~~ 188 (713)
+-...+.|..++.
T Consensus 163 ~~~~d~~i~iwd~ 175 (377)
T 3dwl_C 163 AGCADRKAYVLSA 175 (377)
T ss_dssp EEESSSCEEEEEE
T ss_pred EEeCCCEEEEEEE
Confidence 4445566666664
|
| >2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A* | Back alignment and structure |
|---|
Probab=92.27 E-value=0.053 Score=53.36 Aligned_cols=58 Identities=28% Similarity=0.724 Sum_probs=43.4
Q ss_pred CCCCCeEecCCCCcceeecCCCcccCCCCcC--C--------CCC-----CCCCCCCeecCCCCccCCCCCceeeCCCC-
Q psy6570 599 CDNAGLCSYSKQGKPVCTCVNGWSGITCSER--V--------SCA-----HFCFNGGTCREQNYSLDPDLKPICICPRG- 662 (713)
Q Consensus 599 C~~~g~C~~~~~g~~~C~C~~G~~G~~C~~~--~--------~C~-----~~C~~~~~C~~~~~~~~~~~~~~C~C~~G- 662 (713)
|+++|.|... .|.|.+||+|..|+-. . .|. ..|..+|+|+- ++|+|..+
T Consensus 198 C~g~G~~~CG-----~C~C~~g~~G~~CeC~~~~~~~~~~~~~C~~~~~~~~CSgrG~C~C----------G~C~C~~~~ 262 (280)
T 2p26_A 198 CHGKGFLECG-----ICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC----------GQCLCHTSD 262 (280)
T ss_dssp GGGSEEEETT-----EEEECTTEESTTSCEECTTSCHHHHHHTTCSSTTSCGGGGSEEEET----------TEEEECCCS
T ss_pred cCCCCeECCC-----ceeCCCCCcCCcceecCCccccccccccCCCCCCCCccCCCceEeC----------CeeECcCCC
Confidence 7777888743 4999999999999721 1 474 24888888887 79999776
Q ss_pred -----cccCCCCcc
Q psy6570 663 -----YAGVRCQTL 671 (713)
Q Consensus 663 -----y~G~~C~~~ 671 (713)
|.|..|+.-
T Consensus 263 ~~~~~~~G~~~~~~ 276 (280)
T 2p26_A 263 VPGKLIYGQYCEHH 276 (280)
T ss_dssp STTCEEESTTSCEE
T ss_pred CCCeeEeeEecccc
Confidence 577788753
|
| >1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A | Back alignment and structure |
|---|
Probab=92.21 E-value=0.035 Score=49.89 Aligned_cols=38 Identities=26% Similarity=0.819 Sum_probs=28.2
Q ss_pred ccCCCCCCCCCCceeeCCCCCCCCCceeeCCCCcccCCCCcc
Q psy6570 344 KVNNSMCPCLNQGMCYPDLTHPEPTYKCHCAPSYTGARCESR 385 (713)
Q Consensus 344 ~~~c~~~~C~~~~~C~~~~~~~~~~~~C~C~~G~~g~~C~~~ 385 (713)
...|...||.+++.|.+... .|.|.|.+||+|..|+..
T Consensus 119 ~~~~~~~pc~~~g~C~~~~~----~~~c~C~~g~~g~~Ce~~ 156 (157)
T 1g1t_A 119 TAACTNTSCSGHGECVETIN----NYTCKCDPGFSGLKCEQI 156 (157)
T ss_dssp ECCCCTTGGGGSEEEEEETT----EEEEEECTTEESTTSCEE
T ss_pred cCCCCCCCCCCCCEeecCCC----CeeEECCCCccCcccccc
Confidence 33445567887888877644 788999999999888754
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.11 E-value=10 Score=37.78 Aligned_cols=177 Identities=11% Similarity=-0.054 Sum_probs=84.0
Q ss_pred cCCceeEEEccCcc-cEE--e-c--CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCc-------eEEEEEcCCC
Q psy6570 5 SSGNVTRVKREMNL-KTV--L-S--NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR-------KKRTLLNTGL 71 (713)
Q Consensus 5 ~~~~I~~~~~~~~~-~~~--~-~--~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~-------~~~~l~~~~~ 71 (713)
.++.|...++.... +.+ + . .......|++.+.+..|. +-. ..+.|.+.++... .....+....
T Consensus 32 ~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~la-s~s---~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~ 107 (330)
T 2hes_X 32 TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLA-AGS---FDSTVSIWAKEESADRTFEMDLLAIIEGHE 107 (330)
T ss_dssp SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEE-EEE---TTSCEEEEEC-------CCCEEEEEEC---
T ss_pred CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEE-EEe---CCCcEEEEEcccCcCccccceeEEEEcCCC
Confidence 35666666665432 111 2 1 223457888988755554 444 4567777776421 1111222223
Q ss_pred CCcceEEEcCCCCcEEEEccCCCCeEEEEecC--CCCcEE--EEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC
Q psy6570 72 NEPYDIALEPLSGRMFWTELGIKPRISGASID--GKNKFN--LVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNG 147 (713)
Q Consensus 72 ~~p~~iavD~~~~~ly~td~~~~~~I~~~~~d--G~~~~~--l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g 147 (713)
.....|++.|...+|+-.. ... .|..-+++ +...+. .+.........|++++....|..+. ..+.|...+...
T Consensus 108 ~~V~~v~~sp~g~~las~s-~D~-~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~i~iW~~~~ 184 (330)
T 2hes_X 108 NEVKGVAWSNDGYYLATCS-RDK-SVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSS-YDDTVRIWKDYD 184 (330)
T ss_dssp -CEEEEEECTTSCEEEEEE-TTS-CEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEE-TTSCEEEEEEET
T ss_pred CcEEEEEECCCCCEEEEEe-CCC-EEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEc-CCCeEEEEECCC
Confidence 5677899998554444433 323 56666663 222222 2223344567899998666555443 445555554433
Q ss_pred CceeEEEecCCCCccceeeeeeC---CeEEEEeCCCCcEEEEcc
Q psy6570 148 KDRFVVYHTEDNGYKPYKLEVFE---DNLYFSTYRTNNILKINK 188 (713)
Q Consensus 148 ~~~~~~~~~~~~~~~p~~i~~~~---~~ly~td~~~~~i~~~~~ 188 (713)
...+.+............+++.. +.++++-...+.|...+.
T Consensus 185 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~ 228 (330)
T 2hes_X 185 DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228 (330)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred CCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence 22122221111112234445442 234445445555655544
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=92.08 E-value=4.6 Score=46.40 Aligned_cols=149 Identities=12% Similarity=0.100 Sum_probs=86.5
Q ss_pred CCceEEEeccCCe-EEEeecCCCCCCeEEEEecCCceEEEEEcC----CCCCcceEEEcCCCCcEEEEccCCCCeEEEEe
Q psy6570 27 DPRGVAVDWVGKN-LYWTDAGGRSSNNIMVSTLEGRKKRTLLNT----GLNEPYDIALEPLSGRMFWTELGIKPRISGAS 101 (713)
Q Consensus 27 ~p~gla~D~~~~~-ly~td~~~~~~~~I~~~~~~G~~~~~l~~~----~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~ 101 (713)
.+.+|+.|.. ++ ||+.-. .+-|.+++.++...+.+... ....+..|+.|+ ++.|++... . .|.+.+
T Consensus 407 ~v~~i~~d~~-g~~lWigt~----~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwigt~--~-Gl~~~~ 477 (795)
T 4a2l_A 407 NIKAVYVDEK-KSLVYIGTH----AGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWLGTL--S-ALVRFN 477 (795)
T ss_dssp CEEEEEEETT-TTEEEEEET----TTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEEEES--S-CEEEEE
T ss_pred cEEEEEEcCC-CCEEEEEeC----cCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEEEec--C-ceeEEe
Confidence 4567888854 66 666543 45688888876554444321 124567899985 677877664 2 588888
Q ss_pred cCCCCcEEEEeC----C--CCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEe--cCCCCc--cceeeeee-C
Q psy6570 102 IDGKNKFNLVDN----N--IQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYH--TEDNGY--KPYKLEVF-E 170 (713)
Q Consensus 102 ~dG~~~~~l~~~----~--~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~--~~~~~~--~p~~i~~~-~ 170 (713)
.+....+.+... . ......|..| ..++||++.. +-|++++.+.... .+.. ....+. ...+|..+ +
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d-~~g~lWigt~--~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~ 553 (795)
T 4a2l_A 478 PEQRSFTTIEKEKDGTPVVSKQITTLFRD-SHKRLWIGGE--EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASN 553 (795)
T ss_dssp TTTTEEEECCBCTTCCBCCCCCEEEEEEC-TTCCEEEEES--SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTT
T ss_pred CCCCeEEEccccccccccCCceEEEEEEC-CCCCEEEEeC--CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCC
Confidence 765433332211 1 1345678888 5678888775 4688888765433 2221 111121 23455555 4
Q ss_pred CeEEEEeCCCCcEEEEcccC
Q psy6570 171 DNLYFSTYRTNNILKINKFG 190 (713)
Q Consensus 171 ~~ly~td~~~~~i~~~~~~~ 190 (713)
+.||++... .|.++++..
T Consensus 554 g~lWigT~~--Gl~~~d~~~ 571 (795)
T 4a2l_A 554 GIIWVGTRE--GFYCFNEKD 571 (795)
T ss_dssp SCEEEEESS--CEEEEETTT
T ss_pred CCEEEEeCC--CceeECCCC
Confidence 567666543 678887543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=92.06 E-value=4.5 Score=46.20 Aligned_cols=158 Identities=10% Similarity=0.076 Sum_probs=90.7
Q ss_pred CceEEEe-ccCCeEEEeecC-CCCCCeEEEEecCCc-eEEEEEcCCCC-CcceEEEcCCCCcEEEEccCC--C-CeEEEE
Q psy6570 28 PRGVAVD-WVGKNLYWTDAG-GRSSNNIMVSTLEGR-KKRTLLNTGLN-EPYDIALEPLSGRMFWTELGI--K-PRISGA 100 (713)
Q Consensus 28 p~gla~D-~~~~~ly~td~~-~~~~~~I~~~~~~G~-~~~~l~~~~~~-~p~~iavD~~~~~ly~td~~~--~-~~I~~~ 100 (713)
..++++. +.++.|.++... ......|++.++++. .. +...+. ...+++..|.++.||++.... . .+|++.
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~---l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT---IADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC---CCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe---CCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 3457788 777777665542 112235999999876 41 111111 134678887777787775431 1 379999
Q ss_pred ecCCCCc--EEEEeC-CCCCCeeEEEeCCCCeEEEEcC--CCCcEEEEeCCCCc--e--eEEEecCCCCccceeee-eeC
Q psy6570 101 SIDGKNK--FNLVDN-NIQWPTGITIDYPSQRLYWADP--KARTIESINLNGKD--R--FVVYHTEDNGYKPYKLE-VFE 170 (713)
Q Consensus 101 ~~dG~~~--~~l~~~-~~~~p~glavd~~~~~LY~~d~--~~~~I~~~~~~g~~--~--~~~~~~~~~~~~p~~i~-~~~ 170 (713)
++++... +.++.. .-..-.++++++++++|+|+.. ....|+.+++++.. . +.+.... ...-+.++ ..+
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~--~~~~~s~~~~~g 330 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE--KGVRYDVQMHGT 330 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC--TTCCEEEEEETT
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC--CCceEEEeeeeC
Confidence 9977542 233332 2223457789988888888753 35579999987642 2 3332211 11113344 337
Q ss_pred CeEEEEeCC----CCcEEEEcccC
Q psy6570 171 DNLYFSTYR----TNNILKINKFG 190 (713)
Q Consensus 171 ~~ly~td~~----~~~i~~~~~~~ 190 (713)
+.||+.... ..+|++++..+
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTS
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCC
Confidence 777776432 34688887653
|
| >2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A* | Back alignment and structure |
|---|
Probab=92.03 E-value=0.033 Score=61.39 Aligned_cols=44 Identities=20% Similarity=0.545 Sum_probs=37.7
Q ss_pred eeCCCCcccCCCC-ccCCCCCCCCCCEEEcCCCeeeCCCCCccCCCC
Q psy6570 371 CHCAPSYTGARCE-SRICENKCHNGGTCIATTQTCVCPPGFTGDTCQ 416 (713)
Q Consensus 371 C~C~~G~~g~~C~-~~~C~~~C~~~~~C~~~~~~C~C~~g~~g~~C~ 416 (713)
..|.+||.|+.|. ...|...|.++|.|.+ +.|.|.+||+|..|.
T Consensus 520 ~~C~~gw~g~dc~i~~~Cp~~C~ghG~C~~--G~C~Cd~G~~G~~C~ 564 (725)
T 2e26_A 520 FDKQQTWAIDNVYIGDGCLDMCSGHGRCVQ--GSCVCDEQWGGLYCD 564 (725)
T ss_dssp CCTTCCEEEEEEEEESCSSGGGGGSEEEET--TEEEECTTEESTTSC
T ss_pred CccCCCcccccccccCCCCcccCCCcEECC--CCEeeCCCccCCCcC
Confidence 3688999999998 4668888999999987 789999999998887
|
| >2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* | Back alignment and structure |
|---|
Probab=91.88 E-value=0.11 Score=37.65 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=25.3
Q ss_pred cEEeecC-CCceeeCCCCCc----CCCCCcCCCCCCCCCCCCC
Q psy6570 564 GTCVLIE-GKPSCKCLPPYS----GKQCTEREDSPSCHNYCDN 601 (713)
Q Consensus 564 ~~C~~~~-g~~~C~C~~G~~----G~~C~~~~~~~~C~~~C~~ 601 (713)
..|+++. |+|+|.|++||. |+.|.+.. ...|...|.+
T Consensus 11 ~~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d~~-~~pC~~~c~n 52 (59)
T 2wph_E 11 QFCKNSADNKVVCSCTEGYRLAENQKSCEPAV-PFPCGRVSVS 52 (59)
T ss_dssp SEEEECSTTCEEEECCTTEEECTTSSCEEESS-SSCTTCCCSC
T ss_pred CEeEeCCCCCEEeeCCCCcEECCCCCcccCCC-CCCCCCcccc
Confidence 3699988 699999999996 66777642 2344444433
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=91.71 E-value=1.3 Score=48.50 Aligned_cols=104 Identities=15% Similarity=0.162 Sum_probs=61.0
Q ss_pred CCCcceEEEcCCCCcEEEEccCC--------------------CCeEEEEecCCCCc-------EEEEe-----------
Q psy6570 71 LNEPYDIALEPLSGRMFWTELGI--------------------KPRISGASIDGKNK-------FNLVD----------- 112 (713)
Q Consensus 71 ~~~p~~iavD~~~~~ly~td~~~--------------------~~~I~~~~~dG~~~-------~~l~~----------- 112 (713)
+.+|.+|+++|.++.||++-.++ .++|++...++... ..++.
T Consensus 383 f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~~ 462 (592)
T 3zwu_A 383 MDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTP 462 (592)
T ss_dssp EECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSG
T ss_pred EeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccccc
Confidence 67899999999999999985432 25799987764321 11111
Q ss_pred ----------CCCCCCeeEEEeCCCCeEEEEc-CC-----------CCcEEEEeCCCCceeEEEecCCCCccceeeeee-
Q psy6570 113 ----------NNIQWPTGITIDYPSQRLYWAD-PK-----------ARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF- 169 (713)
Q Consensus 113 ----------~~~~~p~glavd~~~~~LY~~d-~~-----------~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~- 169 (713)
..+..|.+|+||+. ++||+.+ .. ++.++.++.+......|+.... .....|+.+.
T Consensus 463 ~~~~~~~~~~~~f~~PDNL~fd~~-G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~-gaE~TG~~fsp 540 (592)
T 3zwu_A 463 KGGSSNITPQNMFNSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI-GCEVTGISFSP 540 (592)
T ss_dssp GGCCTTCCTTTCCCCEEEEEECTT-CCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT-TCEEEEEEECT
T ss_pred cccccccCCCCCccCCcceEECCC-CCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC-CccCcCeeECC
Confidence 12678999999964 5677764 32 2345555554334444433321 2233455443
Q ss_pred -CCeEEEE
Q psy6570 170 -EDNLYFS 176 (713)
Q Consensus 170 -~~~ly~t 176 (713)
+..||+.
T Consensus 541 Dg~tlfvn 548 (592)
T 3zwu_A 541 DQKTLFVG 548 (592)
T ss_dssp TSSEEEEE
T ss_pred CCCEEEEE
Confidence 3355554
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=91.51 E-value=13 Score=37.60 Aligned_cols=153 Identities=7% Similarity=-0.033 Sum_probs=78.9
Q ss_pred CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCC-
Q psy6570 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGK- 105 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~- 105 (713)
....+++.+..+.+.++-. ..+.|.+.++........+.. .....+|++++ ..++++..+ .|...++...
T Consensus 60 ~~~~~~~~~~~~~~~~~~~---~d~~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~--~~~~~~~~~---~i~i~d~~~~~ 130 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTG---VKEVVHIWDDVKKQDVSRIKV-DAPVKDLFLSR--EFIVVSYGD---VISVFKFGNPW 130 (355)
T ss_dssp CCCEEEECTTSSEEEEECS---STTEEEEEETTTTEEEEEEEC-SSCEEEEEECS--SEEEEEETT---EEEEEESSTTC
T ss_pred CeEEEEEcCCCCEEEEEEC---CccEEEEEECCCCcEEEEEEC-CCceEEEEEcC--CEEEEEEcC---EEEEEECCCCc
Confidence 4555677666666655554 456888888754433222222 24566777764 344444322 6777776654
Q ss_pred C-cEEEEeCCCCCCee-EEEeCCCCeEEEE-cCCCCcEEEEeCCCCc-----------------eeEEEecCCCCcccee
Q psy6570 106 N-KFNLVDNNIQWPTG-ITIDYPSQRLYWA-DPKARTIESINLNGKD-----------------RFVVYHTEDNGYKPYK 165 (713)
Q Consensus 106 ~-~~~l~~~~~~~p~g-lavd~~~~~LY~~-d~~~~~I~~~~~~g~~-----------------~~~~~~~~~~~~~p~~ 165 (713)
. ...+.. |.+ +++.+ ..|.++ ....+.|...++.... ...+... ......
T Consensus 131 ~~~~~~~~-----~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h---~~~v~~ 200 (355)
T 3vu4_A 131 KRITDDIR-----FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH---TNPIKM 200 (355)
T ss_dssp CBSSCCEE-----EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCC---SSCEEE
T ss_pred eeeEEecc-----CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc---CCceEE
Confidence 1 111111 333 34443 555554 4566777777776432 2222111 222345
Q ss_pred eeee-CCeEEEEeCCCCc-EEEEcccCCCcceeee
Q psy6570 166 LEVF-EDNLYFSTYRTNN-ILKINKFGNSDFNVLA 198 (713)
Q Consensus 166 i~~~-~~~ly~td~~~~~-i~~~~~~~~~~~~~~~ 198 (713)
+++. ++.++.+-...+. |...+...+.....+.
T Consensus 201 ~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~ 235 (355)
T 3vu4_A 201 VRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR 235 (355)
T ss_dssp EEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence 5554 3455566556666 7777766555444443
|
| >1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=91.48 E-value=0.52 Score=42.71 Aligned_cols=31 Identities=23% Similarity=0.520 Sum_probs=25.9
Q ss_pred ccCCCCCCC-----CCCCCeeeccCCCceeeeCCCCcc
Q psy6570 219 VTNHCDDKP-----CHQSALCINLPSSHTCLCPDHLTE 251 (713)
Q Consensus 219 ~~~~C~~~~-----C~~~~~C~~~~g~~~C~C~~G~~~ 251 (713)
.+++|...+ | .+.|++.+|+|+|.|++||.+
T Consensus 123 di~eC~~~~~~~~~C--~~~C~n~~g~~~C~C~~Gy~l 158 (170)
T 1szb_A 123 DIDECQVAPGEAPTC--DHHCHNHLGGFYCSCRAGYVL 158 (170)
T ss_dssp ECCTTCCCTTSCCSS--SSEEEEETTEEEEECCTTEEE
T ss_pred ccCcccCCCCCCCcc--CCccccCCCCEEEeCCCCcEE
Confidence 357888654 7 568999999999999999984
|
| >1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=91.32 E-value=0.087 Score=40.33 Aligned_cols=31 Identities=35% Similarity=1.019 Sum_probs=20.4
Q ss_pred CCCCCCCcEEeec--CCCceeeCCCCCcCCCCCc
Q psy6570 557 PNYCSNNGTCVLI--EGKPSCKCLPPYSGKQCTE 588 (713)
Q Consensus 557 ~~~C~~~~~C~~~--~g~~~C~C~~G~~G~~C~~ 588 (713)
.+.|.+ |+|... .+.+.|.|.+||+|..|+.
T Consensus 45 ~~yCln-G~C~~i~~~~~~~C~C~~GYtG~RCE~ 77 (79)
T 1xdt_R 45 KDFCIH-GECKYVKELRAPSCICHPGYHGERCHG 77 (79)
T ss_dssp TTCCSS-EEECCBGGGTBCCEEECTTEESTTCCE
T ss_pred cCcCCC-CEeeeecCCCCeEEEcCCCcccccccc
Confidence 445655 478433 2467788888888888763
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=91.30 E-value=12 Score=36.70 Aligned_cols=117 Identities=9% Similarity=0.078 Sum_probs=62.6
Q ss_pred CCceEEEeccC-CeEEEeecCCCCCCeEEEEecCCce--EEEEEcCCCCCcceEEEcCCC------------CcEEEEcc
Q psy6570 27 DPRGVAVDWVG-KNLYWTDAGGRSSNNIMVSTLEGRK--KRTLLNTGLNEPYDIALEPLS------------GRMFWTEL 91 (713)
Q Consensus 27 ~p~gla~D~~~-~~ly~td~~~~~~~~I~~~~~~G~~--~~~l~~~~~~~p~~iavD~~~------------~~ly~td~ 91 (713)
....|++.+.. +.++++-. ..+.|.+.++.... ...++.........+++.|.. +.++++-.
T Consensus 101 ~v~~v~~~p~~~g~~l~s~s---~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs 177 (297)
T 2pm7_B 101 SVNSVQWAPHEYGPMLLVAS---SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 177 (297)
T ss_dssp CEEEEEECCGGGCSEEEEEE---TTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEE
T ss_pred ceeEEEeCcCCCCcEEEEEE---CCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEc
Confidence 35677777652 34444444 46778888876432 112222223456677777642 34555543
Q ss_pred CCCCeEEEEecCCCCc-E---EEEeCCCCCCeeEEEeCCC--CeEEEEcCCCCcEEEEeCCC
Q psy6570 92 GIKPRISGASIDGKNK-F---NLVDNNIQWPTGITIDYPS--QRLYWADPKARTIESINLNG 147 (713)
Q Consensus 92 ~~~~~I~~~~~dG~~~-~---~l~~~~~~~p~glavd~~~--~~LY~~d~~~~~I~~~~~~g 147 (713)
... .|...+++.... . ..+.........|+++|.. +.++.+-...+.|...+++.
T Consensus 178 ~D~-~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 178 ADN-LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp TTS-CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred CCC-cEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 333 555555544331 1 1222234456889999764 45555555566666666554
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=91.21 E-value=7.2 Score=40.35 Aligned_cols=169 Identities=14% Similarity=0.075 Sum_probs=89.3
Q ss_pred ceEEEecc-CCeEEEeecCCCCCCeEEEEecCCceEEEEEcCC----C--------CCcceEEEcCCC-CcEEEEccCCC
Q psy6570 29 RGVAVDWV-GKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG----L--------NEPYDIALEPLS-GRMFWTELGIK 94 (713)
Q Consensus 29 ~gla~D~~-~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~----~--------~~p~~iavD~~~-~~ly~td~~~~ 94 (713)
..|++|+. .+.||+... .+.|++.+-.|+.-+.+.... + ..+..|++|+.+ +.||+... .
T Consensus 180 ~~i~~d~~~~~~l~vg~~----~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~--~ 253 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMS----SGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH--C 253 (394)
T ss_dssp EEEEECTTCTTCEEEEEE----TBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET--T
T ss_pred eEEEECCCCCCEEEEEEC----CCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC--C
Confidence 47888874 467888754 345888776665543332110 0 135689999864 66777543 2
Q ss_pred CeEEEEecCCCCcEEEEeCCCC-----CCeeEEEeCC-CCeEEEEcC------------CCCcEEEEeCCCCceeEEEec
Q psy6570 95 PRISGASIDGKNKFNLVDNNIQ-----WPTGITIDYP-SQRLYWADP------------KARTIESINLNGKDRFVVYHT 156 (713)
Q Consensus 95 ~~I~~~~~dG~~~~~l~~~~~~-----~p~glavd~~-~~~LY~~d~------------~~~~I~~~~~~g~~~~~~~~~ 156 (713)
.|++..-.|..-+.+ ...+. ....|++|+. .+.||++-. ....|++..-.|..-+.+...
T Consensus 254 -gl~~s~D~G~tW~~~-~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~g 331 (394)
T 3b7f_A 254 -GIYRMDRREGVWKRI-GDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRG 331 (394)
T ss_dssp -EEEEEETTTTEEECG-GGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBT
T ss_pred -eEEEeCCCCCcceEC-CCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCC
Confidence 688776444432222 21122 2245788764 467877621 123566544334444444321
Q ss_pred CCCCcc--------ceeeeee---CCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEE
Q psy6570 157 EDNGYK--------PYKLEVF---EDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLIL 210 (713)
Q Consensus 157 ~~~~~~--------p~~i~~~---~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~ 210 (713)
++. ..+|+++ .+.||+.. ..+.|++-. +++...+.+...+.....|.+.
T Consensus 332 ---lp~~~~~~~~~~~~~~~~p~~~~~l~~g~-~~g~l~~S~-D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 332 ---LPTDQAWLTVKRQAMTADAHAPVGVYFGT-TGGEIWASA-DEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp ---SCCSSCCCCCCTBSEEECCSSSCCEEEEC-TTSCEEEES-STTSBCEEEECSCSCEEEEEEE
T ss_pred ---CCCccccceEEEEEEEECCCCCCEEEEEe-CCCeEEEEC-CCCCCceEcccCCCCeeEEEEe
Confidence 111 1234443 24577753 344566554 4566666666666655555544
|
| >2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* | Back alignment and structure |
|---|
Probab=90.75 E-value=0.091 Score=37.23 Aligned_cols=25 Identities=44% Similarity=0.846 Sum_probs=18.7
Q ss_pred EEeecCC-CceeeCCCCCc----CCCCCcC
Q psy6570 565 TCVLIEG-KPSCKCLPPYS----GKQCTER 589 (713)
Q Consensus 565 ~C~~~~g-~~~C~C~~G~~----G~~C~~~ 589 (713)
.|+++.| +|+|.|++||. |+.|.++
T Consensus 12 ~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d~ 41 (53)
T 2bz6_L 12 YCSDHTGTKRSCRCHEGYSLLADGVSCTPT 41 (53)
T ss_dssp EEEEETTTEEEEECCTTEEECTTSSCEEEC
T ss_pred EeEcCCCCCEEeeCCCCCEECCCCCcccCC
Confidence 5888877 68888888886 5667664
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.64 E-value=15 Score=42.73 Aligned_cols=116 Identities=9% Similarity=0.004 Sum_probs=74.7
Q ss_pred CCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCC
Q psy6570 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDG 104 (713)
Q Consensus 25 ~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG 104 (713)
...+..|++++.+..|.... ..+.|.+.+..+....... ..-.....|++.| +.+|+-.. ... .|..-+++.
T Consensus 17 ~~~V~~lafspdg~~lAsgs----~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s-~D~-~v~lWd~~~ 88 (902)
T 2oaj_A 17 SSKPIAAAFDFTQNLLAIAT----VTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVIN-AKD-TVYVLSLYS 88 (902)
T ss_dssp SSCEEEEEEETTTTEEEEEE----TTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEE-TTC-EEEEEETTT
T ss_pred CCCcEEEEECCCCCEEEEEe----CCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEE-CcC-eEEEEECCC
Confidence 34578899999876666554 4678999888765443332 2234578899998 44344443 333 677777765
Q ss_pred CCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCce
Q psy6570 105 KNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDR 150 (713)
Q Consensus 105 ~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~ 150 (713)
......+. .-.....|++++...+|+.+. ..+.|...+++....
T Consensus 89 ~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs-~dg~V~lwd~~~~~~ 132 (902)
T 2oaj_A 89 QKVLTTVF-VPGKITSIDTDASLDWMLIGL-QNGSMIVYDIDRDQL 132 (902)
T ss_dssp CSEEEEEE-CSSCEEEEECCTTCSEEEEEE-TTSCEEEEETTTTEE
T ss_pred CcEEEEEc-CCCCEEEEEECCCCCEEEEEc-CCCcEEEEECCCCcc
Confidence 44332222 224568899998888888775 456788888876543
|
| >1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A | Back alignment and structure |
|---|
Probab=90.63 E-value=0.082 Score=47.37 Aligned_cols=35 Identities=40% Similarity=0.915 Sum_probs=24.9
Q ss_pred CCCCCCCCCCcEEeecCCCceeeCCCCCcCCCCCc
Q psy6570 554 KCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTE 588 (713)
Q Consensus 554 ~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~ 588 (713)
.|.+.+|.+++.|.+..+.|.|.|.+||+|..|+.
T Consensus 121 ~~~~~pc~~~g~C~~~~~~~~c~C~~g~~g~~Ce~ 155 (157)
T 1g1t_A 121 ACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 155 (157)
T ss_dssp CCCTTGGGGSEEEEEETTEEEEEECTTEESTTSCE
T ss_pred CCCCCCCCCCCEeecCCCCeeEECCCCccCccccc
Confidence 45556676777777777777777777777777764
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=90.46 E-value=13 Score=41.93 Aligned_cols=15 Identities=7% Similarity=0.146 Sum_probs=13.0
Q ss_pred eeEEEeCCCCeEEEE
Q psy6570 119 TGITIDYPSQRLYWA 133 (713)
Q Consensus 119 ~glavd~~~~~LY~~ 133 (713)
.++|+|+.++.||+.
T Consensus 392 ~~~a~dp~~~~~yv~ 406 (689)
T 1yiq_A 392 QPMSYNPDTGLVYIP 406 (689)
T ss_dssp SCCEEETTTTEEEEE
T ss_pred CcceECCCCCEEEEe
Confidence 458999999999986
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=89.62 E-value=13 Score=40.92 Aligned_cols=76 Identities=4% Similarity=-0.035 Sum_probs=40.7
Q ss_pred eeEEEeCCCCeEEEEcC--------------------------------CCCcEEEEeCCCCceeEEEecCCCCccceee
Q psy6570 119 TGITIDYPSQRLYWADP--------------------------------KARTIESINLNGKDRFVVYHTEDNGYKPYKL 166 (713)
Q Consensus 119 ~glavd~~~~~LY~~d~--------------------------------~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i 166 (713)
.++|+|+.++.||+... ..+.|..+|+......--..... ....-.+
T Consensus 415 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~ 493 (582)
T 1flg_A 415 NPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVL 493 (582)
T ss_dssp SCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCE
T ss_pred CCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccce
Confidence 47899999999998632 13456666664322211111111 1111224
Q ss_pred eeeCCeEEEEeCCCCcEEEEcccCCCccee
Q psy6570 167 EVFEDNLYFSTYRTNNILKINKFGNSDFNV 196 (713)
Q Consensus 167 ~~~~~~ly~td~~~~~i~~~~~~~~~~~~~ 196 (713)
+..++.||+.+ ..+.++.++...++.+-.
T Consensus 494 ~tagglvf~g~-~dg~l~A~D~~tG~~lW~ 522 (582)
T 1flg_A 494 ATAGNLVFTGT-GDGYFKAFDAKSGKELWK 522 (582)
T ss_dssp EETTTEEEEEC-TTSEEEEEETTTCCEEEE
T ss_pred EeCCCEEEEEC-CCCcEEEEECCCCCEEEE
Confidence 44566777754 356677777665555433
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=89.60 E-value=16 Score=37.43 Aligned_cols=73 Identities=4% Similarity=-0.093 Sum_probs=44.4
Q ss_pred CCceEEEec-------cCCeEEEeecCCCCCCeEEEEecCCce-EEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEE
Q psy6570 27 DPRGVAVDW-------VGKNLYWTDAGGRSSNNIMVSTLEGRK-KRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRIS 98 (713)
Q Consensus 27 ~p~gla~D~-------~~~~ly~td~~~~~~~~I~~~~~~G~~-~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~ 98 (713)
....|++.+ ..++++.+-+ ..+.|.+-++.... ...+.. .-..+..+++.|.+..++++-.... .|.
T Consensus 138 ~v~~v~~~p~~~~~~~~d~~~las~s---~D~tv~~Wd~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~d~-~v~ 212 (393)
T 4gq1_A 138 FVNDIDIADVYSADNRLAEQVIASVG---DDCTLIIWRLTDEGPILAGYP-LSSPGISVQFRPSNPNQLIVGERNG-NIR 212 (393)
T ss_dssp CEEEEEEEEEECTTCSEEEEEEEEEE---TTSEEEEEEEETTEEEEEEEE-CSSCEEEEEEETTEEEEEEEEETTS-EEE
T ss_pred ceEEEEEccccccccCCCCCEEEEEE---CCCeEEEEECCCCceeeeecC-CCCCcEEEEECCCCCceEEecCCCC-EEE
Confidence 357788765 2456776766 67788888875433 333332 2356778999987666666544333 566
Q ss_pred EEecCC
Q psy6570 99 GASIDG 104 (713)
Q Consensus 99 ~~~~dG 104 (713)
..++..
T Consensus 213 ~wd~~t 218 (393)
T 4gq1_A 213 IFDWTL 218 (393)
T ss_dssp EEETTC
T ss_pred EEECCC
Confidence 666543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=89.18 E-value=30 Score=38.07 Aligned_cols=16 Identities=6% Similarity=0.027 Sum_probs=13.6
Q ss_pred CeeEEEeCCCCeEEEE
Q psy6570 118 PTGITIDYPSQRLYWA 133 (713)
Q Consensus 118 p~glavd~~~~~LY~~ 133 (713)
..++|+|+.++.||+.
T Consensus 395 w~~~a~dp~~~~~yv~ 410 (599)
T 1w6s_A 395 QGHDSYDPKRELFFMG 410 (599)
T ss_dssp SCBCEEETTTTEEEEE
T ss_pred CCCccCCCCCCEEEEe
Confidence 3678999999999986
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=89.10 E-value=11 Score=39.61 Aligned_cols=97 Identities=5% Similarity=-0.176 Sum_probs=58.8
Q ss_pred CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCC
Q psy6570 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGK 105 (713)
Q Consensus 26 ~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~ 105 (713)
..+.+|++.+..+.++.+-. ..+.|.+.++...............+..|++.|...+|+.... .. .|...++++.
T Consensus 150 ~~V~~v~~~p~~~~~las~s---~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~-dg-~v~iwd~~~~ 224 (434)
T 2oit_A 150 GMVIDMKWNPTVPSMVAVCL---ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQ-NG-TVVQYLPTLQ 224 (434)
T ss_dssp GSEEEEEECSSCTTEEEEEE---TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEET-TS-CEEEECTTCC
T ss_pred CceEEEEECCCCCCEEEEEE---CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcC-CC-cEEEEccCCc
Confidence 45678999887666776666 5788999988765332222222356889999987666665553 33 6888888754
Q ss_pred CcEEEEeCC-CC-----CCeeEEEeCCC
Q psy6570 106 NKFNLVDNN-IQ-----WPTGITIDYPS 127 (713)
Q Consensus 106 ~~~~l~~~~-~~-----~p~glavd~~~ 127 (713)
...++.... .. ....|++++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~v~~v~w~~~~ 252 (434)
T 2oit_A 225 EKKVIPCPPFYESDHPVRVLDVLWIGTY 252 (434)
T ss_dssp EEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred ccccccCCcccCCCCceeEEEEEEecCc
Confidence 443332111 11 33567777533
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.93 E-value=20 Score=35.69 Aligned_cols=153 Identities=7% Similarity=0.027 Sum_probs=74.3
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCce---EEEEEcC-CCCCcceEEEcCCCCcEEEEccCCCCeEEEEecC
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK---KRTLLNT-GLNEPYDIALEPLSGRMFWTELGIKPRISGASID 103 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~---~~~l~~~-~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~d 103 (713)
...+++++ + ++++-. ..+.|.+.++.... ..++... .......|++.|...+|...... . .|..-+++
T Consensus 17 v~~~~~s~--~-~las~~---~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D-~-~v~iw~~~ 88 (330)
T 2hes_X 17 IWSFDFSQ--G-ILATGS---TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD-S-TVSIWAKE 88 (330)
T ss_dssp EEEEEEET--T-EEEEEE---SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT-S-CEEEEEC-
T ss_pred eeeeccCC--C-EEEEEc---CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC-C-cEEEEEcc
Confidence 45566654 3 444544 56788888876532 2222122 23457789999865545444332 2 45555543
Q ss_pred CCC-----cE--EEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCC-C-CceeEEEecCCCCccceeeeee-CCeE
Q psy6570 104 GKN-----KF--NLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLN-G-KDRFVVYHTEDNGYKPYKLEVF-EDNL 173 (713)
Q Consensus 104 G~~-----~~--~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~-g-~~~~~~~~~~~~~~~p~~i~~~-~~~l 173 (713)
... .. ..+.........|++++.+.+|..+ ...+.|...+++ + ...+.+............+++. .+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~-s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 167 (330)
T 2hes_X 89 ESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC-SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEAL 167 (330)
T ss_dssp ------CCCEEEEEEC----CEEEEEECTTSCEEEEE-ETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSE
T ss_pred cCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEE-eCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCE
Confidence 211 11 1222233456789999876655544 345667777763 2 2222222211112223445544 3445
Q ss_pred EEEeCCCCcEEEEccc
Q psy6570 174 YFSTYRTNNILKINKF 189 (713)
Q Consensus 174 y~td~~~~~i~~~~~~ 189 (713)
+++-...+.|...+..
T Consensus 168 l~s~s~D~~i~iW~~~ 183 (330)
T 2hes_X 168 LASSSYDDTVRIWKDY 183 (330)
T ss_dssp EEEEETTSCEEEEEEE
T ss_pred EEEEcCCCeEEEEECC
Confidence 5555555666655543
|
| >3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.67 E-value=0.29 Score=51.67 Aligned_cols=37 Identities=32% Similarity=0.761 Sum_probs=32.9
Q ss_pred CCCCCCCCCCCcEEeecCCCceeeCCC-CCcCCCCCcC
Q psy6570 553 NKCTPNYCSNNGTCVLIEGKPSCKCLP-PYSGKQCTER 589 (713)
Q Consensus 553 ~~C~~~~C~~~~~C~~~~g~~~C~C~~-G~~G~~C~~~ 589 (713)
+.|..++|.++|+|....++|.|.|+. ||.|..|+..
T Consensus 186 ~~C~~~pC~n~g~C~~~~~~~~C~C~~~~~~G~~C~~~ 223 (410)
T 3asi_A 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDP 223 (410)
T ss_dssp SCCCTTSSSTTCEEEECSSSEEEECTTTSEESTTSCEE
T ss_pred CCcccccCCCCCEecCCCCCceEeccCCcccCCCCCCC
Confidence 467788999999999999999999996 9999999853
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.66 E-value=20 Score=39.07 Aligned_cols=170 Identities=11% Similarity=0.067 Sum_probs=95.4
Q ss_pred CCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCC----CCcceEEEcCCCCcEEEEccCCCCeEEEE
Q psy6570 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGL----NEPYDIALEPLSGRMFWTELGIKPRISGA 100 (713)
Q Consensus 25 ~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~----~~p~~iavD~~~~~ly~td~~~~~~I~~~ 100 (713)
-..+.++++.+.+..|-.+.. .+.|.+.+.++ .... ..... .....|++.|.+++|+.+... . .|..-
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~----dg~V~iwd~~~-~l~~-l~~~~~~~~~sv~svafSPDG~~LAsgs~D-G-tVkIW 156 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSN----NGNVSVFKDNK-MLTN-LDSKGNLSSRTYHCFEWNPIESSIVVGNED-G-ELQFF 156 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEET----TSCEEEEETTE-EEEE-CCCSSCSTTTCEEEEEECSSSSCEEEEETT-S-EEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeC----CCcEEEEeCCc-eeee-ccCCCccccccEEEEEEcCCCCEEEEEcCC-C-EEEEE
Confidence 344678888887777766554 56777777555 2222 22111 136789999988888887643 2 57777
Q ss_pred ecCCCCc--------EEEE---eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCcee----EEEecCCCCcccee
Q psy6570 101 SIDGKNK--------FNLV---DNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRF----VVYHTEDNGYKPYK 165 (713)
Q Consensus 101 ~~dG~~~--------~~l~---~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~----~~~~~~~~~~~p~~ 165 (713)
++.+... .++- .....+...|++.|++ +++-...+.|+..++++.... .+... . .....+
T Consensus 157 d~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~-h-~~~V~s 231 (588)
T 2j04_A 157 SIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNA-S-RRKITD 231 (588)
T ss_dssp ECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECC-C-SSCCCC
T ss_pred ECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeeccc-c-cCcEEE
Confidence 7776542 2221 1123578899999765 445455677888888876632 23211 1 123455
Q ss_pred eeeeCCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEE
Q psy6570 166 LEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLI 209 (713)
Q Consensus 166 i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v 209 (713)
+++.+..|..+ . .++|...+..++..............++.+
T Consensus 232 vaFsg~~LASa-~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~ 273 (588)
T 2j04_A 232 LKIVDYKVVLT-C-PGYVHKIDLKNYSISSLKTGSLENFHIIPL 273 (588)
T ss_dssp EEEETTEEEEE-C-SSEEEEEETTTTEEEEEECSCCSCCCEEEE
T ss_pred EEEECCEEEEE-e-CCeEEEEECCCCeEEEEEcCCCceEEEEEe
Confidence 56554444444 3 467777776544332333233333344433
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=88.60 E-value=31 Score=37.62 Aligned_cols=114 Identities=11% Similarity=0.120 Sum_probs=62.8
Q ss_pred ceEEEeccCCeEEEeecCCCCCCeEEEEec-CCceEEEEEcCCC----CCcceEEEcCCCCcEEEEccC----CCCeEEE
Q psy6570 29 RGVAVDWVGKNLYWTDAGGRSSNNIMVSTL-EGRKKRTLLNTGL----NEPYDIALEPLSGRMFWTELG----IKPRISG 99 (713)
Q Consensus 29 ~gla~D~~~~~ly~td~~~~~~~~I~~~~~-~G~~~~~l~~~~~----~~p~~iavD~~~~~ly~td~~----~~~~I~~ 99 (713)
.+++++ +++||+... .++|+.++. +|+.+-..-.... ..-...+++ ++.||+...+ ..+.|+.
T Consensus 109 ~~~~~~--~~~v~v~~~----dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a 180 (571)
T 2ad6_A 109 RGLAYG--AGQIVKKQA----NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNA 180 (571)
T ss_dssp CCCEEE--TTEEEEECT----TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEE
T ss_pred cccEEE--CCEEEEEeC----CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEE
Confidence 456765 678888764 567888886 5655433221110 001112232 5778887643 1237777
Q ss_pred EecC-CCCcEEEEeCCCC-----CC--------------------------------eeEEEeCCCCeEEEEcCC-----
Q psy6570 100 ASID-GKNKFNLVDNNIQ-----WP--------------------------------TGITIDYPSQRLYWADPK----- 136 (713)
Q Consensus 100 ~~~d-G~~~~~l~~~~~~-----~p--------------------------------~glavd~~~~~LY~~d~~----- 136 (713)
++.. |+.+-.+-..... .| ..+++|+..+.|||....
T Consensus 181 ~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~ 260 (571)
T 2ad6_A 181 FDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWN 260 (571)
T ss_dssp EETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSC
T ss_pred EECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCcccc
Confidence 7764 4443333211100 00 247899989999998632
Q ss_pred ----------CCcEEEEeCCCCce
Q psy6570 137 ----------ARTIESINLNGKDR 150 (713)
Q Consensus 137 ----------~~~I~~~~~~g~~~ 150 (713)
...|+.++.+...+
T Consensus 261 ~~~~~gd~~y~~~v~Ald~~tG~~ 284 (571)
T 2ad6_A 261 ETMRPGDNKWTMTIWGRDLDTGMA 284 (571)
T ss_dssp GGGSCSCCTTTTEEEEEETTTCCE
T ss_pred CCccCCCceeEEEEEEEecCCCcE
Confidence 13588888865443
|
| >1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A | Back alignment and structure |
|---|
Probab=88.54 E-value=0.78 Score=35.84 Aligned_cols=67 Identities=19% Similarity=0.574 Sum_probs=51.1
Q ss_pred CCCCCCCCCCcEEeec-CCCceeeCCCCCc--CCCCCcCCCCCCC---CCCCCCCCeEecCCCCcceeecCCCc
Q psy6570 554 KCTPNYCSNNGTCVLI-EGKPSCKCLPPYS--GKQCTEREDSPSC---HNYCDNAGLCSYSKQGKPVCTCVNGW 621 (713)
Q Consensus 554 ~C~~~~C~~~~~C~~~-~g~~~C~C~~G~~--G~~C~~~~~~~~C---~~~C~~~g~C~~~~~g~~~C~C~~G~ 621 (713)
.|....|..++.|... .|.-.|+|..+|. |..|... ....| ...|+.++.|.......-.|+|+..+
T Consensus 6 ~C~~tkcp~NA~Cyr~~dg~EecRCllnykk~~~kCV~~-~~~~C~~NNGGCd~nA~C~~~~~~kIvC~C~~~~ 78 (95)
T 1b9w_A 6 RCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPA-PNMTCKDKNGGCAPEAECKMNDKNEIVCKCTKEG 78 (95)
T ss_dssp SCSSCCCCTTEEEEECTTSCEEEEECTTEEEETTEEEEC-TTCCTTTGGGGSCTTSEEEECTTSCEEEECCSTT
T ss_pred ccccCCCCCCcCeEEEcCCCEEEEEECCeEecCCEEEcC-CCCCccccCCCcCCCcceeecCCCcEEEECCCCC
Confidence 3544568889999986 5788999999997 6678764 22466 45799999998776467889999875
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=88.38 E-value=12 Score=37.12 Aligned_cols=117 Identities=9% Similarity=0.020 Sum_probs=65.7
Q ss_pred CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceE--EEEEcCCCCCcceEEEcCC-CCcEEEEccCCCCeEEEEecC
Q psy6570 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKK--RTLLNTGLNEPYDIALEPL-SGRMFWTELGIKPRISGASID 103 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~--~~l~~~~~~~p~~iavD~~-~~~ly~td~~~~~~I~~~~~d 103 (713)
....|++++.++.|. +-. ..+.|.+.++..... ...+.........|++.+. .+.++++-.... .|..-++.
T Consensus 15 ~V~~v~~s~~g~~la-sgs---~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~-~v~iWd~~ 89 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLA-TCS---SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR-KVIIWREE 89 (316)
T ss_dssp CEEEEEECGGGCEEE-EEE---TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS-CEEEECCS
T ss_pred eEEEeeEcCCCCEEE-EEe---CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC-EEEEEECC
Confidence 456789988765554 444 467888888764322 1122222356778888642 355555543333 56666665
Q ss_pred CCC-cEE-EEeCCCCCCeeEEEeCCC-CeEEEEcCCCCcEEEEeCCCC
Q psy6570 104 GKN-KFN-LVDNNIQWPTGITIDYPS-QRLYWADPKARTIESINLNGK 148 (713)
Q Consensus 104 G~~-~~~-l~~~~~~~p~glavd~~~-~~LY~~d~~~~~I~~~~~~g~ 148 (713)
... ... .+.......+.|++.+.. +.++.+-...+.|...++...
T Consensus 90 ~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 90 NGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp SSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred CCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence 432 222 222234456889999763 455555555666777666543
|
| >2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.21 E-value=0.1 Score=34.95 Aligned_cols=11 Identities=18% Similarity=0.253 Sum_probs=4.4
Q ss_pred hhHHHHHHHHH
Q psy6570 685 HISSILILILL 695 (713)
Q Consensus 685 ~~~~~~~~~~~ 695 (713)
+.++++.++++
T Consensus 13 IA~gVVgGv~~ 23 (44)
T 2ks1_B 13 IATGMVGALLL 23 (44)
T ss_dssp STHHHHHHHHH
T ss_pred EEeehhHHHHH
Confidence 34444443333
|
| >3f6k_A Sortilin; protein sorting receptor, 10-bladed beta-propeller, Cys-rich ssortilin, sortilin VPS10P-D, protein-peptide complex, DEVE protein; HET: NAG BMA PGE; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.19 E-value=35 Score=38.04 Aligned_cols=134 Identities=10% Similarity=0.028 Sum_probs=71.4
Q ss_pred ceEEEeccCC-eEEEeecCC--CCCCeEEEEecCCceEEEEEcCCCCCc-ceEEEcCCCC-cEEEEccCCCCeEEEEecC
Q psy6570 29 RGVAVDWVGK-NLYWTDAGG--RSSNNIMVSTLEGRKKRTLLNTGLNEP-YDIALEPLSG-RMFWTELGIKPRISGASID 103 (713)
Q Consensus 29 ~gla~D~~~~-~ly~td~~~--~~~~~I~~~~~~G~~~~~l~~~~~~~p-~~iavD~~~~-~ly~td~~~~~~I~~~~~d 103 (713)
.+|++|+.+. +||++-... ...+.|++..-.|+.=+.+. .+ ..| ..|+++|.+. .||+.... . .|++. .|
T Consensus 93 ~~IavdP~dp~~vyvag~~~~~~~~g~v~rS~DgG~TW~~~~-~p-~~~~~~l~~~P~~~~~l~a~~~~-~-gly~S-~D 167 (685)
T 3f6k_A 93 FGMAIGPENSGKVVLTAEVSGGSRGGRIFRSSDFAKNFVQTD-LP-FHPLTQMMYSPQNSDYLLALSTE-N-GLWVS-KN 167 (685)
T ss_dssp GCEEECSTTCCCEEEEECCCTTCSSCEEEEESSTTSSCEEEE-CS-SCBSSCCEEETTEEEEEEEEBTT-C-CEEEE-SS
T ss_pred eEEEECCCCCCEEEEEEeccCCCCCceEEEECCCCceeEecc-CC-CCCceEEEEecCCCCEEEEEECC-C-CEEEE-eC
Confidence 4799998654 788875310 02467888776665433333 22 233 3799998654 56666422 2 67775 45
Q ss_pred CCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCC-------CCc--EEEEeCCCCceeEEEecCCCCccceeeeeeCCeEE
Q psy6570 104 GKNKFNLVDNNIQWPTGITIDYPSQRLYWADPK-------ART--IESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLY 174 (713)
Q Consensus 104 G~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~-------~~~--I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly 174 (713)
|...-..+...+. ...+. ..+.|||.-.. .++ |++-+-.|...+.+.. +..++++.+++|+
T Consensus 168 gG~TW~~i~~~v~---~~~f~-~~~~Iy~~~~~~~~~~~~~g~l~L~~S~D~g~t~~~l~~------~i~~f~~~~~yl~ 237 (685)
T 3f6k_A 168 FGGKWEEIHKAVC---LAKWG-SDNTIFFTTYANGSCKADLGALELWRTSDLGKSFKTIGV------KIYSFGLGGRFLF 237 (685)
T ss_dssp TTSSEEEEESSEE---EEEEC-STTCEEEEECSSSCTTTTTTSEEEEEESSTTSSCEEEEE------EEEEEEEETTEEE
T ss_pred CCCCcEEeecCcc---ccccC-CCCeEEEEeeccccccCCCCceEEEEecCCCCCceEeec------cceeeeeeeeEEE
Confidence 5555444443332 23444 24678876322 122 2222222333333322 3356667788888
Q ss_pred EEe
Q psy6570 175 FST 177 (713)
Q Consensus 175 ~td 177 (713)
++.
T Consensus 238 va~ 240 (685)
T 3f6k_A 238 ASV 240 (685)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
| >1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=88.16 E-value=0.13 Score=46.84 Aligned_cols=34 Identities=24% Similarity=0.629 Sum_probs=25.1
Q ss_pred CCCCCCCC-----CCCCcEEeecCCCceeeCCCCCc----CCCCC
Q psy6570 552 ANKCTPNY-----CSNNGTCVLIEGKPSCKCLPPYS----GKQCT 587 (713)
Q Consensus 552 ~~~C~~~~-----C~~~~~C~~~~g~~~C~C~~G~~----G~~C~ 587 (713)
+++|...+ |.+ .|.++.|+|+|.|++||+ |..|+
T Consensus 124 i~eC~~~~~~~~~C~~--~C~n~~g~~~C~C~~Gy~l~~d~~~C~ 166 (170)
T 1szb_A 124 IDECQVAPGEAPTCDH--HCHNHLGGFYCSCRAGYVLHRNKRTCS 166 (170)
T ss_dssp CCTTCCCTTSCCSSSS--EEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred cCcccCCCCCCCccCC--ccccCCCCEEEeCCCCcEECCCCCccc
Confidence 45666433 654 799999999999999998 44554
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.04 E-value=19 Score=38.85 Aligned_cols=167 Identities=4% Similarity=-0.136 Sum_probs=83.5
Q ss_pred CCCCceEEEecc-----CCeEEEeecCCCCCCeEEEEecCCceEE-----------EEEcCCCCCcceEEEcCCCCcEEE
Q psy6570 25 LHDPRGVAVDWV-----GKNLYWTDAGGRSSNNIMVSTLEGRKKR-----------TLLNTGLNEPYDIALEPLSGRMFW 88 (713)
Q Consensus 25 ~~~p~gla~D~~-----~~~ly~td~~~~~~~~I~~~~~~G~~~~-----------~l~~~~~~~p~~iavD~~~~~ly~ 88 (713)
...+..|++.+. .+.+..+-. ..+.|.+.+++..... ..+.........+++.+ .+.| +
T Consensus 207 ~~~V~~v~wsp~~~~~~~~~~LAs~s---~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~~~l-a 281 (524)
T 2j04_B 207 FGEVWDLKWHEGCHAPHLVGCLSFVS---QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-PTTV-V 281 (524)
T ss_dssp CCSEEEEEECSSCCCSSSSCEEEEEE---TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-SSEE-E
T ss_pred CCcEEEEEECCCCCCCCCCceEEEEe---cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-CCeE-E
Confidence 344667777764 124444444 4567777777543210 01111124456777765 3444 4
Q ss_pred EccCCCCeEEEEecCCC-CcEEEEeCCCCCCeeEE--EeCCCC-eEEEEcCCCCcEEEEeCCCCc-eeEEEecCCCCccc
Q psy6570 89 TELGIKPRISGASIDGK-NKFNLVDNNIQWPTGIT--IDYPSQ-RLYWADPKARTIESINLNGKD-RFVVYHTEDNGYKP 163 (713)
Q Consensus 89 td~~~~~~I~~~~~dG~-~~~~l~~~~~~~p~gla--vd~~~~-~LY~~d~~~~~I~~~~~~g~~-~~~~~~~~~~~~~p 163 (713)
+-.... .|..-++... .....+.........|+ +. ..+ .++.+-...+.|...++.... ...+.... .....
T Consensus 282 sgs~Dg-tV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s-~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~-~~~~v 358 (524)
T 2j04_B 282 CGFKNG-FVAEFDLTDPEVPSFYDQVHDSYILSVSTAYS-DFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF-RGSNL 358 (524)
T ss_dssp EEETTS-EEEEEETTBCSSCSEEEECSSSCEEEEEEECC-TTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC-SCCSC
T ss_pred EEeCCC-EEEEEECCCCCCceEEeecccccEEEEEEEcC-CCCCeEEEEeccCCeEEEEECCCCCccccccccc-ccCcc
Confidence 433333 7777777633 33333333344456673 34 333 677776677778887764322 22222211 11122
Q ss_pred eeeeeeC-CeEEEEeCCCCcEEEEcccCCCcceeeec
Q psy6570 164 YKLEVFE-DNLYFSTYRTNNILKINKFGNSDFNVLAN 199 (713)
Q Consensus 164 ~~i~~~~-~~ly~td~~~~~i~~~~~~~~~~~~~~~~ 199 (713)
..+++.. +..+++....+.|...+...+.....+..
T Consensus 359 ~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g 395 (524)
T 2j04_B 359 VPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS 395 (524)
T ss_dssp CCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE
T ss_pred cceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec
Confidence 3455543 44566655556677666554443333333
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=87.96 E-value=22 Score=35.07 Aligned_cols=180 Identities=8% Similarity=-0.054 Sum_probs=83.4
Q ss_pred CCceeEEEccCccc-EE--ec-CCCCCceEEEecc-CCeEEEeecCCCCCCeEEEEecCCce-EE-EEEcCCCCCcceEE
Q psy6570 6 SGNVTRVKREMNLK-TV--LS-NLHDPRGVAVDWV-GKNLYWTDAGGRSSNNIMVSTLEGRK-KR-TLLNTGLNEPYDIA 78 (713)
Q Consensus 6 ~~~I~~~~~~~~~~-~~--~~-~~~~p~gla~D~~-~~~ly~td~~~~~~~~I~~~~~~G~~-~~-~l~~~~~~~p~~ia 78 (713)
++.|...++..... .+ +. .-.....|++.+. .+.++++-. ..+.|.+.++.... .. ..+.........|+
T Consensus 34 D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s---~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~ 110 (316)
T 3bg1_A 34 DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCS---YDRKVIIWREENGTWEKSHEHAGHDSSVNSVC 110 (316)
T ss_dssp TTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEE---TTSCEEEECCSSSCCCEEEEECCCSSCCCEEE
T ss_pred CCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEE---CCCEEEEEECCCCcceEEEEccCCCCceEEEE
Confidence 44555555543221 11 22 2234566777532 244444544 46778888876532 22 22222235678899
Q ss_pred EcCCC-CcEEEEccCCCCeEEEEecCCCCcEEEEe---CCCCCCeeEEEeCCC----------------CeEEEEcCCCC
Q psy6570 79 LEPLS-GRMFWTELGIKPRISGASIDGKNKFNLVD---NNIQWPTGITIDYPS----------------QRLYWADPKAR 138 (713)
Q Consensus 79 vD~~~-~~ly~td~~~~~~I~~~~~dG~~~~~l~~---~~~~~p~glavd~~~----------------~~LY~~d~~~~ 138 (713)
+.|.. +.++.+-.... .|...++.......+.. ........+++++.. ++++++-...+
T Consensus 111 ~~p~~~g~~lasgs~D~-~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~ 189 (316)
T 3bg1_A 111 WAPHDYGLILACGSSDG-AISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDN 189 (316)
T ss_dssp ECCTTTCSCEEEECSSS-CEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTS
T ss_pred ECCCCCCcEEEEEcCCC-CEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCC
Confidence 98763 55555543333 56666665443221111 111223456666542 23444444445
Q ss_pred cEEEEeCCCCc-eeEEEecCCCCccceeeeeeC-----CeEEEEeCCCCcEEEEccc
Q psy6570 139 TIESINLNGKD-RFVVYHTEDNGYKPYKLEVFE-----DNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 139 ~I~~~~~~g~~-~~~~~~~~~~~~~p~~i~~~~-----~~ly~td~~~~~i~~~~~~ 189 (713)
.|...++.... ...+...........++++.. +.++++-...+.|...+..
T Consensus 190 ~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 190 LIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp BCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred eEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 55554544322 122222111111234455432 2455665566677666544
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=87.88 E-value=27 Score=36.02 Aligned_cols=154 Identities=8% Similarity=-0.024 Sum_probs=76.6
Q ss_pred CCCeEEEEecCCceEE-EEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCc----EEEEeCCCCCCeeEEE
Q psy6570 49 SSNNIMVSTLEGRKKR-TLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNK----FNLVDNNIQWPTGITI 123 (713)
Q Consensus 49 ~~~~I~~~~~~G~~~~-~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~----~~l~~~~~~~p~glav 123 (713)
....|...+....... ..+.........+.+.+....|.... ..+ .|...++..... .............+++
T Consensus 207 ~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~-~D~-~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 284 (420)
T 4gga_A 207 RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG-NDN-LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 284 (420)
T ss_dssp TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTS-CEEEEESSCCSSCSCCSEEECCCSSCEEEEEE
T ss_pred CCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeee-ccc-cceEEeeccccccceeeeeecccCCceeeeee
Confidence 3566666665543322 22223345567788876554444433 223 455555442211 1122223344577888
Q ss_pred eCCCCeEEEEc--CCCCcEEEEeCCCCceeEEEecCCCCccceeeeee--CCeEEEEe-CCCCcEEEEcccCCCcceeee
Q psy6570 124 DYPSQRLYWAD--PKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF--EDNLYFST-YRTNNILKINKFGNSDFNVLA 198 (713)
Q Consensus 124 d~~~~~LY~~d--~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~--~~~ly~td-~~~~~i~~~~~~~~~~~~~~~ 198 (713)
.+....|+.+- ...+.|...++........... ......+.+. ++.|+.+. ...+.|..++...+..+..+.
T Consensus 285 ~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~ 361 (420)
T 4gga_A 285 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK 361 (420)
T ss_dssp CTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC
T ss_pred CCCcccEEEEEeecCCCEEEEEeCCccccceeecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc
Confidence 88777766553 3446777777765443333322 1233334433 44555543 245667777765555555444
Q ss_pred ccccccccE
Q psy6570 199 NNLNRASDV 207 (713)
Q Consensus 199 ~~~~~~~~i 207 (713)
.+...+..+
T Consensus 362 gH~~~V~~l 370 (420)
T 4gga_A 362 GHTSRVLSL 370 (420)
T ss_dssp CCSSCEEEE
T ss_pred CCCCCEEEE
Confidence 333333333
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=87.67 E-value=39 Score=37.66 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=61.2
Q ss_pred ceEEEeccCCeEEEeecCCCCCCeEEEEec-CCceEEEEEcCC----CCCcceEEEcCCCCcEEEEccC----CCCeEEE
Q psy6570 29 RGVAVDWVGKNLYWTDAGGRSSNNIMVSTL-EGRKKRTLLNTG----LNEPYDIALEPLSGRMFWTELG----IKPRISG 99 (713)
Q Consensus 29 ~gla~D~~~~~ly~td~~~~~~~~I~~~~~-~G~~~~~l~~~~----~~~p~~iavD~~~~~ly~td~~----~~~~I~~ 99 (713)
.+++++ +++||+... .++|+.++. +|+.+-...... .......+|+ ++.||+...+ ..+.|+.
T Consensus 111 ~~~~~~--~~~v~v~~~----dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~~~v~vg~~~~~~~~~g~v~a 182 (668)
T 1kv9_A 111 RGVALW--GDKVYVGTL----DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSA 182 (668)
T ss_dssp CCCEEE--BTEEEEECT----TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEE
T ss_pred cceEEE--CCEEEEEcC----CCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE--CCEEEEeCCCCCcCCCCEEEE
Confidence 556775 578888764 577888886 465543332211 0111122332 5677776543 1236777
Q ss_pred EecC-CCCcEEEEeCC-C-----------------------------CCCeeEEEeCCCCeEEEEcCCC-----------
Q psy6570 100 ASID-GKNKFNLVDNN-I-----------------------------QWPTGITIDYPSQRLYWADPKA----------- 137 (713)
Q Consensus 100 ~~~d-G~~~~~l~~~~-~-----------------------------~~p~glavd~~~~~LY~~d~~~----------- 137 (713)
++.. |+.+-.+-... . ..-..+++|+..++||+.....
T Consensus 183 ~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~ 262 (668)
T 1kv9_A 183 YDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPG 262 (668)
T ss_dssp EETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTT
T ss_pred EECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCC
Confidence 7763 44333332100 0 0002479999899999985321
Q ss_pred -------CcEEEEeCCCCcee
Q psy6570 138 -------RTIESINLNGKDRF 151 (713)
Q Consensus 138 -------~~I~~~~~~g~~~~ 151 (713)
..|+.++++.....
T Consensus 263 ~gd~l~~~~v~AlD~~tG~~~ 283 (668)
T 1kv9_A 263 GGDNLYLSSILAIRPDTGKLA 283 (668)
T ss_dssp CCCCTTTTEEEEECTTTCCEE
T ss_pred CCCceeeeeEEEEcCCCCcee
Confidence 25888887544433
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.28 E-value=19 Score=39.20 Aligned_cols=115 Identities=5% Similarity=-0.002 Sum_probs=75.1
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCce--------EEEEE---cCCCCCcceEEEcCCCCcEEEEccCCCCe
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK--------KRTLL---NTGLNEPYDIALEPLSGRMFWTELGIKPR 96 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~--------~~~l~---~~~~~~p~~iavD~~~~~ly~td~~~~~~ 96 (713)
..+|++.+.++.|+.+.. .+.|.+.++++.. ..++- .........|++.|. + | .+....+ .
T Consensus 132 v~svafSPDG~~LAsgs~----DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd-g-L-aass~D~-t 203 (588)
T 2j04_A 132 YHCFEWNPIESSIVVGNE----DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED-V-L-VAALSNN-S 203 (588)
T ss_dssp EEEEEECSSSSCEEEEET----TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT-E-E-EEEETTC-C
T ss_pred EEEEEEcCCCCEEEEEcC----CCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC-c-E-EEEeCCC-e
Confidence 677999999888887764 6889999988763 23331 111357888999874 4 4 3333334 6
Q ss_pred EEEEecCCCCcE----EEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEE
Q psy6570 97 ISGASIDGKNKF----NLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVY 154 (713)
Q Consensus 97 I~~~~~dG~~~~----~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~ 154 (713)
|..-++++.... ++....-.....+++. ++.|-.+- .+.|...++.+.....+.
T Consensus 204 VrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~--~~tIkLWd~~~~~~~~~~ 261 (588)
T 2j04_A 204 VFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC--PGYVHKIDLKNYSISSLK 261 (588)
T ss_dssp EEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC--SSEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe--CCeEEEEECCCCeEEEEE
Confidence 777777776642 2322223457888997 46666554 478999998887664444
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=87.18 E-value=13 Score=42.29 Aligned_cols=110 Identities=14% Similarity=0.137 Sum_probs=62.4
Q ss_pred CcceEEEcCCCCcEEEE-ccCCCCeEEEEecCCCCcEEEEeCCC---CCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCC
Q psy6570 73 EPYDIALEPLSGRMFWT-ELGIKPRISGASIDGKNKFNLVDNNI---QWPTGITIDYPSQRLYWADPKARTIESINLNGK 148 (713)
Q Consensus 73 ~p~~iavD~~~~~ly~t-d~~~~~~I~~~~~dG~~~~~l~~~~~---~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~ 148 (713)
.+..|..|. +|.|++. ... . .|.+++.+....+.+....+ ..+..|..| ..++|+++-. +-|.+++....
T Consensus 473 ~i~~i~~d~-~g~lWi~~~t~-~-Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d-~~g~lWigt~--~Gl~~~~~~~~ 546 (758)
T 3ott_A 473 FINQIIPDN-EGNVWVLLYNN-K-GIDKINPRTREVTKLFADELTGEKSPNYLLCD-EDGLLWVGFH--GGVMRINPKDE 546 (758)
T ss_dssp CEEEEEECT-TSCEEEEETTC-S-SEEEEETTTTEEEEECTTTSCGGGCEEEEEEC-TTSCEEEEET--TEEEEECC--C
T ss_pred eeeeEEEcC-CCCEEEEccCC-C-CcEEEeCCCCceEEecCCCcCCCcccceEEEC-CCCCEEEEec--CceEEEecCCC
Confidence 467889985 6778762 222 3 58888876543333322112 346778888 5778888763 35888887654
Q ss_pred ceeEEEecCCCCccceeeeeeCCeEEEEeCCCCcEEEEcccC
Q psy6570 149 DRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFG 190 (713)
Q Consensus 149 ~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~ 190 (713)
..+.+...........+|..++++||++. .+.|.++++..
T Consensus 547 ~~~~~~~~gl~~~~i~~i~~~~g~lWi~t--~~Gl~~~~~~~ 586 (758)
T 3ott_A 547 SQQSISFGSFSNNEILSMTCVKNSIWVST--TNGLWIIDRKT 586 (758)
T ss_dssp CCCBCCCCC---CCEEEEEEETTEEEEEE--SSCEEEEETTT
T ss_pred ceEEecccCCCccceEEEEECCCCEEEEC--CCCeEEEcCCC
Confidence 33322111111123456666677887775 34578887653
|
| >1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=87.00 E-value=1.9 Score=38.27 Aligned_cols=30 Identities=37% Similarity=0.801 Sum_probs=25.1
Q ss_pred cCCCCC---CCCCCCCeeeccCCCceeeeCCCCcc
Q psy6570 220 TNHCDD---KPCHQSALCINLPSSHTCLCPDHLTE 251 (713)
Q Consensus 220 ~~~C~~---~~C~~~~~C~~~~g~~~C~C~~G~~~ 251 (713)
+++|.. .+| .+.|.+.+++|+|.|++||.+
T Consensus 117 ~~eC~~~~~~~C--~~~C~n~~g~~~C~C~~Gy~l 149 (159)
T 1nzi_A 117 INECTDFVDVPC--SHFCNNFIGGYFCSCPPEYFL 149 (159)
T ss_dssp CCTTTC-CCCCS--SSEEEEETTEEEEECCTTCEE
T ss_pred CcccCCCCCCCC--CCcccCcCCCEEEecCCCcEE
Confidence 478875 257 679999999999999999984
|
| >3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP} | Back alignment and structure |
|---|
Probab=86.08 E-value=17 Score=41.36 Aligned_cols=165 Identities=9% Similarity=0.044 Sum_probs=86.9
Q ss_pred CCCCCceEEEeccCC-eEEEeecCCCCCCeEEEEecCCceEEEEEc-C----------CCCCcceEEEcCCC-CcEEEEc
Q psy6570 24 NLHDPRGVAVDWVGK-NLYWTDAGGRSSNNIMVSTLEGRKKRTLLN-T----------GLNEPYDIALEPLS-GRMFWTE 90 (713)
Q Consensus 24 ~~~~p~gla~D~~~~-~ly~td~~~~~~~~I~~~~~~G~~~~~l~~-~----------~~~~p~~iavD~~~-~~ly~td 90 (713)
...+..+|++|+.+. .+|+.- ..+.|++..-.|+.=+.+.. . .......|++||.+ +.||++.
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~----~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~ 94 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYART----DIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQ 94 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEE----SSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEE
T ss_pred CCCceeEEEeCCCCCCEEEEEe----ccCcEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEe
Confidence 455788999999874 555543 35678888777765333332 1 12346789999854 6777754
Q ss_pred c-----CCCCeEEEEecCCCCcEEEEeCCCC-------CC--eeEEEeCCC-CeEEEEcCCCCcEEEEeCCCCceeEEEe
Q psy6570 91 L-----GIKPRISGASIDGKNKFNLVDNNIQ-------WP--TGITIDYPS-QRLYWADPKARTIESINLNGKDRFVVYH 155 (713)
Q Consensus 91 ~-----~~~~~I~~~~~dG~~~~~l~~~~~~-------~p--~glavd~~~-~~LY~~d~~~~~I~~~~~~g~~~~~~~~ 155 (713)
. +....|+|..-.|..=+.+.. .+. .. ..|++++.+ +.||... ....|++..=.|..-+.+..
T Consensus 95 g~~~~~~~~~~i~~S~DgG~TW~~~~~-~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~-~~~~l~~S~DgG~TW~~~~~ 172 (763)
T 3a0f_A 95 GDYVQWDPWAAFLVSDDRGKTFKQYRS-PVPMGANDMGRNGGERLAVNPHWTDELWFGS-RTQGLWRSTDRAQTWSRMNQ 172 (763)
T ss_dssp CSCTTTCSCCEEEEESSTTSSCEEEEC-SSCCCTTSTTTTSBCCEEECTTSTTCEEEEC-SSSCEEEESSTTSSCEECTT
T ss_pred cccccCCCCceEEEECCCCCCceeccC-CcccCccccCccccceEEECCCCCCEEEEEe-CCCcEEEECCCCcCcccccc
Confidence 3 123467776555554444432 111 11 369999765 5677654 33567765433443333321
Q ss_pred cCCCC---ccceeeeee---CCeEEEEeCCCCcEEEEcccCCCcce
Q psy6570 156 TEDNG---YKPYKLEVF---EDNLYFSTYRTNNILKINKFGNSDFN 195 (713)
Q Consensus 156 ~~~~~---~~p~~i~~~---~~~ly~td~~~~~i~~~~~~~~~~~~ 195 (713)
..... .....|.++ .+.||++....+.|++-. +++...+
T Consensus 173 ~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~g~v~~S~-DgG~tW~ 217 (763)
T 3a0f_A 173 LPDSSTYGIGIISVIFDPKNVGTAYVASHAVGGLWVTW-DGGANWS 217 (763)
T ss_dssp SCCCSCTTTCEEEEEECSSSTTCEEEEESSTTCEEEES-SSSSSCE
T ss_pred CcccCCCccceEEEEECCCCCCEEEEEEeCCCeEEEEC-CCCCCcc
Confidence 11100 111233333 346777755433454443 3444333
|
| >2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.87 E-value=0.16 Score=33.83 Aligned_cols=12 Identities=8% Similarity=0.199 Sum_probs=4.7
Q ss_pred hhHHHHHHHHHH
Q psy6570 685 HISSILILILLL 696 (713)
Q Consensus 685 ~~~~~~~~~~~~ 696 (713)
+.++++..++++
T Consensus 12 IA~gVVgGv~~v 23 (44)
T 2l2t_A 12 IAAGVIGGLFIL 23 (44)
T ss_dssp HHHHHHHHHHHH
T ss_pred EEEeehHHHHHH
Confidence 333444334333
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.83 E-value=27 Score=33.88 Aligned_cols=133 Identities=7% Similarity=-0.036 Sum_probs=63.9
Q ss_pred CCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCC-c---EEEEeCCCCCCeeEEEeCCCCeEEEE--cCCCCcEEEEe
Q psy6570 71 LNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKN-K---FNLVDNNIQWPTGITIDYPSQRLYWA--DPKARTIESIN 144 (713)
Q Consensus 71 ~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~-~---~~l~~~~~~~p~glavd~~~~~LY~~--d~~~~~I~~~~ 144 (713)
......+++.+....|+... ... .|...++.... . .............+++.+....+++. ....+.|...+
T Consensus 150 ~~~~~~~~~~~~~~~l~s~~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd 227 (318)
T 4ggc_A 150 SQEVCGLRWAPDGRHLASGG-NDN-LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 227 (318)
T ss_dssp SSCEEEEEECTTSSEEEEEE-TTS-CEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEE
T ss_pred cCceEEEEEcCCCCEEEEEe-cCc-ceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEe
Confidence 34566677776444444333 323 56555554221 1 11112223344667777766665543 33445676666
Q ss_pred CCCCceeEEEecCCCCccceeeee--eCCeEEEEe-CCCCcEEEEcccCCCcceeeeccccccccEE
Q psy6570 145 LNGKDRFVVYHTEDNGYKPYKLEV--FEDNLYFST-YRTNNILKINKFGNSDFNVLANNLNRASDVL 208 (713)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~p~~i~~--~~~~ly~td-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~ 208 (713)
............. .....+.+ .++.++.+. ...+.|...+...+..+..+..+...+..++
T Consensus 228 ~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~ 291 (318)
T 4ggc_A 228 VCSGACLSAVDAH---SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT 291 (318)
T ss_dssp TTTCCEEEEEECS---SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred cccccccccccce---eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 6554443333221 12222232 345555443 3456777777666655555544433344443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=84.30 E-value=58 Score=36.44 Aligned_cols=31 Identities=16% Similarity=0.187 Sum_probs=21.8
Q ss_pred eEEEeCCCCeEEEEcCCC------------------CcEEEEeCCCCce
Q psy6570 120 GITIDYPSQRLYWADPKA------------------RTIESINLNGKDR 150 (713)
Q Consensus 120 glavd~~~~~LY~~d~~~------------------~~I~~~~~~g~~~ 150 (713)
.+++|+..++||+..... ..|+.+|.+....
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~ 287 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY 287 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce
Confidence 589999899999875431 2488888764433
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=84.04 E-value=30 Score=35.41 Aligned_cols=53 Identities=8% Similarity=-0.154 Sum_probs=31.7
Q ss_pred CCceeEEEccCcc--cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCc
Q psy6570 6 SGNVTRVKREMNL--KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR 61 (713)
Q Consensus 6 ~~~I~~~~~~~~~--~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~ 61 (713)
++.|...++.... ..+...-..+..+++.+.+.+++++-. ..+.|.+.++...
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~---~d~~v~~wd~~t~ 219 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGE---RNGNIRIFDWTLN 219 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEE---TTSEEEEEETTCC
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecC---CCCEEEEEECCCC
Confidence 4455555654332 222334445678888887666666655 5678888887643
|
| >2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.00 E-value=0.3 Score=32.66 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=15.4
Q ss_pred ccchhHHHHHHHHHHHHHHhheeeEEEEecC
Q psy6570 682 VNSHISSILILILLLITVGGIGYYIFRIKMS 712 (713)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (713)
+++-+++-+++++++++++.+++.++++++|
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRHIVRK 43 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhHhhcc
Confidence 4444444444444554445555555555554
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=83.71 E-value=17 Score=41.36 Aligned_cols=147 Identities=10% Similarity=0.034 Sum_probs=79.9
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCC---CCcceEEEcCCCCcEEEEccCCCCeEEEEecCC
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGL---NEPYDIALEPLSGRMFWTELGIKPRISGASIDG 104 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~---~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG 104 (713)
+..|..|. .++||+... ..+-|.+++++....+.+....+ ..+..|..| .+|.|+++.. . .|.+++.+.
T Consensus 474 i~~i~~d~-~g~lWi~~~---t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d-~~g~lWigt~--~-Gl~~~~~~~ 545 (758)
T 3ott_A 474 INQIIPDN-EGNVWVLLY---NNKGIDKINPRTREVTKLFADELTGEKSPNYLLCD-EDGLLWVGFH--G-GVMRINPKD 545 (758)
T ss_dssp EEEEEECT-TSCEEEEET---TCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEEC-TTSCEEEEET--T-EEEEECC--
T ss_pred eeeEEEcC-CCCEEEEcc---CCCCcEEEeCCCCceEEecCCCcCCCcccceEEEC-CCCCEEEEec--C-ceEEEecCC
Confidence 56688885 467776222 23458888887655554432222 356788898 5788887753 2 588887765
Q ss_pred CCcEEEEeCCC--CCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEeCCCCc
Q psy6570 105 KNKFNLVDNNI--QWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNN 182 (713)
Q Consensus 105 ~~~~~l~~~~~--~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~~~~ 182 (713)
...+.+....+ ....+|+.| .++|+++. .+-|.+++......+........+ ....+...++.||+.. .+.
T Consensus 546 ~~~~~~~~~gl~~~~i~~i~~~--~g~lWi~t--~~Gl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~l~fG~--~~G 618 (758)
T 3ott_A 546 ESQQSISFGSFSNNEILSMTCV--KNSIWVST--TNGLWIIDRKTMDARQQNMTNKRF-TSLLFDPKEDCVYLGG--ADG 618 (758)
T ss_dssp CCCCBCCCCC---CCEEEEEEE--TTEEEEEE--SSCEEEEETTTCCEEEC--CCCCC-SEEEEETTTTEEEEEC--BSE
T ss_pred CceEEecccCCCccceEEEEEC--CCCEEEEC--CCCeEEEcCCCceeEEecCCCCce-eeeEEECCCCcEEEec--CCc
Confidence 44332211122 234566655 68888876 345888887654433221111111 1111122367888874 345
Q ss_pred EEEEccc
Q psy6570 183 ILKINKF 189 (713)
Q Consensus 183 i~~~~~~ 189 (713)
+.++++.
T Consensus 619 l~~f~p~ 625 (758)
T 3ott_A 619 FGISHSN 625 (758)
T ss_dssp EEEEEC-
T ss_pred eEEEChh
Confidence 6777664
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=83.29 E-value=36 Score=33.34 Aligned_cols=161 Identities=12% Similarity=0.080 Sum_probs=87.5
Q ss_pred CCceeEEEccCcccEEecCCCCCc---eEEEeccCCeEEEeecCC--CCCCeEEEEecCCceEEEEEcCCCCCcc---eE
Q psy6570 6 SGNVTRVKREMNLKTVLSNLHDPR---GVAVDWVGKNLYWTDAGG--RSSNNIMVSTLEGRKKRTLLNTGLNEPY---DI 77 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~~~~~p~---gla~D~~~~~ly~td~~~--~~~~~I~~~~~~G~~~~~l~~~~~~~p~---~i 77 (713)
.+.+.++++.+..-..+..+..|+ ++++ .+++||+.-... .....+.++++....-+.+. .+..|+ .+
T Consensus 89 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~r~~~~~ 164 (308)
T 1zgk_A 89 SSALDCYNPMTNQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA--PMLTRRIGVGV 164 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECC--CCSSCCBSCEE
T ss_pred cceEEEECCCCCeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECC--CCCccccceEE
Confidence 356777887765433334444442 3333 468899873210 12456889998765433332 222332 34
Q ss_pred EEcCCCCcEEEEccCC----CCeEEEEecCCCCcEEEEeCCCCCC---eeEEEeCCCCeEEEEcCC-----CCcEEEEeC
Q psy6570 78 ALEPLSGRMFWTELGI----KPRISGASIDGKNKFNLVDNNIQWP---TGITIDYPSQRLYWADPK-----ARTIESINL 145 (713)
Q Consensus 78 avD~~~~~ly~td~~~----~~~I~~~~~dG~~~~~l~~~~~~~p---~glavd~~~~~LY~~d~~-----~~~I~~~~~ 145 (713)
++ .++.||+..-.. ...+++.+++...-+.+. .+..| ..+++. +++||+.-.. ...|+++++
T Consensus 165 ~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 238 (308)
T 1zgk_A 165 AV--LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT--AMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDV 238 (308)
T ss_dssp EE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECC--CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred EE--ECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC--CCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeC
Confidence 44 368899874211 236888887654333221 22222 233333 6889998532 467999998
Q ss_pred CCCceeEEEecCCCCccceeeeeeCCeEEEEe
Q psy6570 146 NGKDRFVVYHTEDNGYKPYKLEVFEDNLYFST 177 (713)
Q Consensus 146 ~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td 177 (713)
....-+.+..... .....++.+.+++||+.-
T Consensus 239 ~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~G 269 (308)
T 1zgk_A 239 ETETWTFVAPMKH-RRSALGITVHQGRIYVLG 269 (308)
T ss_dssp TTTEEEECCCCSS-CCBSCEEEEETTEEEEEC
T ss_pred CCCcEEECCCCCC-CccceEEEEECCEEEEEc
Confidence 7765544432211 222345666788888874
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.24 E-value=36 Score=33.25 Aligned_cols=173 Identities=8% Similarity=-0.037 Sum_probs=94.3
Q ss_pred CCceeEEEccCcccEEecCCCCC---ceEEEeccCCeEEEeecC---CCCCCeEEEEecCCceEEEEEcCCCCCcc---e
Q psy6570 6 SGNVTRVKREMNLKTVLSNLHDP---RGVAVDWVGKNLYWTDAG---GRSSNNIMVSTLEGRKKRTLLNTGLNEPY---D 76 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~~~~~p---~gla~D~~~~~ly~td~~---~~~~~~I~~~~~~G~~~~~l~~~~~~~p~---~ 76 (713)
.+.+.++++....-..+..+..| .++++ .+++||+.-.. ......++++++....-+.+. .+..|+ .
T Consensus 69 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~r~~~~ 144 (306)
T 3ii7_A 69 IKRMDCYNVVKDSWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP--SMLTQRCSHG 144 (306)
T ss_dssp CCEEEEEETTTTEEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC--CCSSCCBSCE
T ss_pred cceEEEEeCCCCeEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC--CCcCCcceeE
Confidence 45677778776543333444444 23333 46889986431 113467999998876544432 233332 2
Q ss_pred EEEcCCCCcEEEEccC----C----CCeEEEEecCCCCcEEEEeCCCCCC---eeEEEeCCCCeEEEEcC-----CCCcE
Q psy6570 77 IALEPLSGRMFWTELG----I----KPRISGASIDGKNKFNLVDNNIQWP---TGITIDYPSQRLYWADP-----KARTI 140 (713)
Q Consensus 77 iavD~~~~~ly~td~~----~----~~~I~~~~~dG~~~~~l~~~~~~~p---~glavd~~~~~LY~~d~-----~~~~I 140 (713)
+++ .++.||+..-. . ...+++.++....-+.+. .+..| ..+++. +++||+.-. ....|
T Consensus 145 ~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~ 218 (306)
T 3ii7_A 145 MVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC--PMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNV 218 (306)
T ss_dssp EEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC--CCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCE
T ss_pred EEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC--CccchhhcceEEEE--CCEEEEEeCCCCCCCCceE
Confidence 333 36789987421 1 236888888765433332 22222 233333 678999842 23578
Q ss_pred EEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEeCC-----CCcEEEEccc
Q psy6570 141 ESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYR-----TNNILKINKF 189 (713)
Q Consensus 141 ~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~-----~~~i~~~~~~ 189 (713)
+++++....-+.+..... .....++.+.+++||+.-.. .+.|++++..
T Consensus 219 ~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 219 EYYDIKLNEWKMVSPMPW-KGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp EEEETTTTEEEECCCCSC-CBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETT
T ss_pred EEeeCCCCcEEECCCCCC-CccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCC
Confidence 999987665444432211 22334566678899987542 2445556543
|
| >3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.20 E-value=0.57 Score=49.34 Aligned_cols=36 Identities=25% Similarity=0.742 Sum_probs=31.1
Q ss_pred CCCCCCCCCCcEEcCCCCCeeccCCC-CCCCCCCccc
Q psy6570 507 KCDTCTCLNGGTCIPNSKNNVCKCPS-QYTGRRCECA 542 (713)
Q Consensus 507 ~C~~~~C~~~g~C~~~~~~~~C~C~~-g~~G~~C~~~ 542 (713)
.|...||.++|+|.+....|.|.|+. +|.|..|+..
T Consensus 187 ~C~~~pC~n~g~C~~~~~~~~C~C~~~~~~G~~C~~~ 223 (410)
T 3asi_A 187 TCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDP 223 (410)
T ss_dssp CCCTTSSSTTCEEEECSSSEEEECTTTSEESTTSCEE
T ss_pred CcccccCCCCCEecCCCCCceEeccCCcccCCCCCCC
Confidence 46667999999999988899999996 9999999853
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=82.67 E-value=61 Score=35.52 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=23.2
Q ss_pred eEEEeCCCCeEEEEcCC---------------CCcEEEEeCCCCcee
Q psy6570 120 GITIDYPSQRLYWADPK---------------ARTIESINLNGKDRF 151 (713)
Q Consensus 120 glavd~~~~~LY~~d~~---------------~~~I~~~~~~g~~~~ 151 (713)
.+++|+..++||+.... ...|+.++.+.....
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~ 291 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK 291 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCcee
Confidence 57899999999998643 247888887654443
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=81.38 E-value=42 Score=32.82 Aligned_cols=174 Identities=11% Similarity=0.085 Sum_probs=91.9
Q ss_pred CCceeEEEccCcccEEecCCCCCc---eEEEeccCCeEEEeecC----C--CCCCeEEEEecCCceEEEEEcCCCCCcc-
Q psy6570 6 SGNVTRVKREMNLKTVLSNLHDPR---GVAVDWVGKNLYWTDAG----G--RSSNNIMVSTLEGRKKRTLLNTGLNEPY- 75 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~~~~~p~---gla~D~~~~~ly~td~~----~--~~~~~I~~~~~~G~~~~~l~~~~~~~p~- 75 (713)
...+.++++....-..+..+..|+ ++++ .++.||+.-.. . ...+.+.++++....-+.+. .+..|+
T Consensus 38 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~r~ 113 (308)
T 1zgk_A 38 LSYLEAYNPSNGTWLRLADLQVPRSGLAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA--PMSVPRN 113 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECC--CCSSCCB
T ss_pred cceEEEEcCCCCeEeECCCCCcccccceEEE--ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECC--CCCcCcc
Confidence 356777887765433334444442 3433 46889986431 0 12356888988765543332 233333
Q ss_pred --eEEEcCCCCcEEEEccC----CCCeEEEEecCCCCcEEEEeCCC-CCCeeEEEeCCCCeEEEEcC-----CCCcEEEE
Q psy6570 76 --DIALEPLSGRMFWTELG----IKPRISGASIDGKNKFNLVDNNI-QWPTGITIDYPSQRLYWADP-----KARTIESI 143 (713)
Q Consensus 76 --~iavD~~~~~ly~td~~----~~~~I~~~~~dG~~~~~l~~~~~-~~p~glavd~~~~~LY~~d~-----~~~~I~~~ 143 (713)
.+++ .++.||+..-. ....+++.++....-+.+..... ..-..+++. +++||+.-. ..+.++++
T Consensus 114 ~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~y 189 (308)
T 1zgk_A 114 RIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECY 189 (308)
T ss_dssp TCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEE
T ss_pred ccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEE
Confidence 3333 36789987421 11268888876543332221111 111233333 689999842 24679999
Q ss_pred eCCCCceeEEEecCCCCccceeeeeeCCeEEEEeCC-----CCcEEEEcc
Q psy6570 144 NLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYR-----TNNILKINK 188 (713)
Q Consensus 144 ~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~-----~~~i~~~~~ 188 (713)
++....-+.+..... .....++.+.+++||+.-.. ...|++++.
T Consensus 190 d~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 238 (308)
T 1zgk_A 190 YPERNEWRMITAMNT-IRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDV 238 (308)
T ss_dssp ETTTTEEEECCCCSS-CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEET
T ss_pred eCCCCeEeeCCCCCC-ccccceEEEECCEEEEEeCCCCCCccceEEEEeC
Confidence 987665544432211 22234556668889987432 234555554
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.87 E-value=43 Score=32.61 Aligned_cols=163 Identities=7% Similarity=-0.024 Sum_probs=89.9
Q ss_pred CCceeEEEccCcccEEecCCCCC---ceEEEeccCCeEEEeecCC-CCCCeEEEEecCCceEEEEEcCCCCCcc---eEE
Q psy6570 6 SGNVTRVKREMNLKTVLSNLHDP---RGVAVDWVGKNLYWTDAGG-RSSNNIMVSTLEGRKKRTLLNTGLNEPY---DIA 78 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~~~~~p---~gla~D~~~~~ly~td~~~-~~~~~I~~~~~~G~~~~~l~~~~~~~p~---~ia 78 (713)
.+.+.++++....-..+..+..| .++++ .++.||+.-... ...+.+.++++....-+.+.. +..|+ .++
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~ 98 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG--PPTPRDSLAAC 98 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC--CSSCCBSCEEE
T ss_pred CceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC--CCccccceeEE
Confidence 35677888877553333444443 23333 468898864311 134678999987765444432 22222 233
Q ss_pred EcCCCCcEEEEccC-----CCCeEEEEecCCCCcEEEEeCCCC-CCeeEEEeCCCCeEEEEcC-----C----CCcEEEE
Q psy6570 79 LEPLSGRMFWTELG-----IKPRISGASIDGKNKFNLVDNNIQ-WPTGITIDYPSQRLYWADP-----K----ARTIESI 143 (713)
Q Consensus 79 vD~~~~~ly~td~~-----~~~~I~~~~~dG~~~~~l~~~~~~-~p~glavd~~~~~LY~~d~-----~----~~~I~~~ 143 (713)
+ .++.||+..-. ....+++.++....=+.+...... .-..+++. +++||+.-. . .+.++++
T Consensus 99 ~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~y 174 (306)
T 3ii7_A 99 A--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVY 174 (306)
T ss_dssp E--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEE
T ss_pred E--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEe
Confidence 3 36789986421 123688888876543333221111 11223333 679999742 1 5679999
Q ss_pred eCCCCceeEEEecCCCCccceeeeeeCCeEEEEe
Q psy6570 144 NLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFST 177 (713)
Q Consensus 144 ~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td 177 (713)
++....-+.+..... .....++.+.+++||+.-
T Consensus 175 d~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~G 207 (306)
T 3ii7_A 175 DPATETWTELCPMIE-ARKNHGLVFVKDKIFAVG 207 (306)
T ss_dssp ETTTTEEEEECCCSS-CCBSCEEEEETTEEEEEC
T ss_pred CCCCCeEEECCCccc-hhhcceEEEECCEEEEEe
Confidence 987765555543221 223345666688898873
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.35 E-value=43 Score=32.28 Aligned_cols=156 Identities=11% Similarity=0.002 Sum_probs=81.8
Q ss_pred CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCce-E---EEEEcCCCCCcceEEEcCCCCcEEEEccC-CCCeEEEEe
Q psy6570 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK-K---RTLLNTGLNEPYDIALEPLSGRMFWTELG-IKPRISGAS 101 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~-~---~~l~~~~~~~p~~iavD~~~~~ly~td~~-~~~~I~~~~ 101 (713)
....+++.+.+..|+ +-. ..+.|.+.++.... . .............++..+....++++..+ ....|...+
T Consensus 152 ~~~~~~~~~~~~~l~-s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd 227 (318)
T 4ggc_A 152 EVCGLRWAPDGRHLA-SGG---NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 227 (318)
T ss_dssp CEEEEEECTTSSEEE-EEE---TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEE
T ss_pred ceEEEEEcCCCCEEE-EEe---cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEe
Confidence 344555555444443 333 35667666654321 1 11111222345677777777776654333 233566666
Q ss_pred cCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEc-CCCCcEEEEeCCCCceeEEEecCCCCccceeeeee-CCeEEEEeCC
Q psy6570 102 IDGKNKFNLVDNNIQWPTGITIDYPSQRLYWAD-PKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYR 179 (713)
Q Consensus 102 ~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d-~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~ 179 (713)
........... .......+++.+..+.|+.+- ...+.|...++........+.. ....-..|++. ++.++++-..
T Consensus 228 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g--H~~~V~~l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 228 VCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGATVASAAA 304 (318)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSCEEEEET
T ss_pred ccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEec
Confidence 65544433332 344567888888888887764 3567788888764433222222 12223455554 3444555555
Q ss_pred CCcEEEEccc
Q psy6570 180 TNNILKINKF 189 (713)
Q Consensus 180 ~~~i~~~~~~ 189 (713)
.+.|+..+.+
T Consensus 305 D~~v~iWd~~ 314 (318)
T 4ggc_A 305 DETLRLWRCF 314 (318)
T ss_dssp TTEEEEECCS
T ss_pred CCeEEEEECC
Confidence 5666655543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=80.14 E-value=50 Score=32.82 Aligned_cols=151 Identities=11% Similarity=0.050 Sum_probs=70.9
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecC-CceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCC
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE-GRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKN 106 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~-G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~ 106 (713)
..+|++++. +.+|.... .+.|++..-. |..-+.+....-.....|++++ ++.||..... +.|++...|+..
T Consensus 165 ~~~~~~~~~-~~~~~~g~----~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~-~g~~~~~~~~--G~~~~s~~D~G~ 236 (327)
T 2xbg_A 165 MRNLNRSPS-GEYVAVSS----RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTP-DGRLWMIVNG--GKIAFSDPDNSE 236 (327)
T ss_dssp EEEEEECTT-SCEEEEET----TSSEEEEECTTCSSCEEEECCSSSCEEEEEECT-TSCEEEEETT--TEEEEEETTEEE
T ss_pred eEEEEEcCC-CcEEEEEC----CCcEEEEeCCCCCceeECCCCCCCccceeEECC-CCCEEEEeCC--ceEEEecCCCCC
Confidence 456777654 45554433 4567776544 4443333322234566788886 4566655432 256665455322
Q ss_pred cEEEEeCC-CC---CCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEeCCCCc
Q psy6570 107 KFNLVDNN-IQ---WPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNN 182 (713)
Q Consensus 107 ~~~l~~~~-~~---~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~~~~ 182 (713)
.-+.+... +. ....|++++ .+.||++.. .+.|++..-.|..-+.+.........-..|.+..+..+|+-...+.
T Consensus 237 tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g~-~g~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~ 314 (327)
T 2xbg_A 237 NWGELLSPLRRNSVGFLDLAYRT-PNEVWLAGG-AGALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGI 314 (327)
T ss_dssp EECCCBCTTSSCCSCEEEEEESS-SSCEEEEES-TTCEEEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTE
T ss_pred eeEeccCCcccCCcceEEEEecC-CCEEEEEeC-CCeEEEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCce
Confidence 11111111 11 124566664 456776643 3456544323444333322110011224455543434455455667
Q ss_pred EEEEcc
Q psy6570 183 ILKINK 188 (713)
Q Consensus 183 i~~~~~ 188 (713)
|++.+.
T Consensus 315 i~~~~~ 320 (327)
T 2xbg_A 315 LLRYVT 320 (327)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 777653
|
| >3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* | Back alignment and structure |
|---|
Probab=80.05 E-value=1.2 Score=54.23 Aligned_cols=42 Identities=31% Similarity=0.775 Sum_probs=33.2
Q ss_pred CCCCCCCCCCCCCCCCcEEeecCCCceeeCC-CCCcCCCCCcC
Q psy6570 548 CASLANKCTPNYCSNNGTCVLIEGKPSCKCL-PPYSGKQCTER 589 (713)
Q Consensus 548 c~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~-~G~~G~~C~~~ 589 (713)
|....+.|..++|.++|+|.....+|.|.|+ +||+|..|+..
T Consensus 1013 C~~~~~~C~~~pC~ngG~C~~~~~~~~C~C~~~g~~G~~C~~~ 1055 (1245)
T 3qcw_A 1013 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDP 1055 (1245)
T ss_dssp SSCCCCCCCTTSSSSSCEEEEETTEEEEECTTSSCBSTTSCBC
T ss_pred eecccCceECCcCCCCCEeCCCCCCCEEECCCCCCCCCCccCC
Confidence 4433467888889888999888888899998 59999888753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 713 | ||||
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 2e-39 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 2e-33 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 3e-16 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 4e-14 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 1e-05 | |
| d1g1sa2 | 40 | g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human | 2e-04 | |
| d1g1sa2 | 40 | g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human | 0.002 | |
| d1g1sa2 | 40 | g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human | 0.002 | |
| d1g1sa2 | 40 | g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human | 0.004 | |
| d2vj3a2 | 39 | g.3.11.1 (A:453-491) Neurogenic locus notch homolo | 2e-04 | |
| d2vj3a2 | 39 | g.3.11.1 (A:453-491) Neurogenic locus notch homolo | 8e-04 | |
| d2vj3a2 | 39 | g.3.11.1 (A:453-491) Neurogenic locus notch homolo | 0.001 | |
| d2vj3a2 | 39 | g.3.11.1 (A:453-491) Neurogenic locus notch homolo | 0.003 | |
| d1edmb_ | 39 | g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens | 3e-04 | |
| d1edmb_ | 39 | g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens | 4e-04 | |
| d1edmb_ | 39 | g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens | 5e-04 | |
| d1edmb_ | 39 | g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens | 0.002 | |
| d1xkba1 | 39 | g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu | 3e-04 | |
| d1xkba1 | 39 | g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu | 6e-04 | |
| d1xkba1 | 39 | g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu | 0.001 | |
| d1xkba1 | 39 | g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu | 0.004 | |
| d1g1ta2 | 39 | g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human | 3e-04 | |
| d1g1ta2 | 39 | g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human | 0.003 | |
| d1g1ta2 | 39 | g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human | 0.003 | |
| d2vj3a3 | 35 | g.3.11.1 (A:492-526) Neurogenic locus notch homolo | 4e-04 | |
| d2vj3a3 | 35 | g.3.11.1 (A:492-526) Neurogenic locus notch homolo | 8e-04 | |
| d2vj3a3 | 35 | g.3.11.1 (A:492-526) Neurogenic locus notch homolo | 0.002 | |
| d2vj3a3 | 35 | g.3.11.1 (A:492-526) Neurogenic locus notch homolo | 0.004 | |
| d2c4fl1 | 37 | g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof | 4e-04 | |
| d2c4fl1 | 37 | g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof | 8e-04 | |
| d2c4fl1 | 37 | g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof | 0.001 | |
| d2c4fl1 | 37 | g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof | 0.002 | |
| d2vj3a1 | 42 | g.3.11.1 (A:411-452) Neurogenic locus notch homolo | 6e-04 | |
| d2vj3a1 | 42 | g.3.11.1 (A:411-452) Neurogenic locus notch homolo | 0.001 | |
| d1ioxa_ | 50 | g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) | 0.002 | |
| d1ioxa_ | 50 | g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) | 0.003 | |
| d3egfa_ | 53 | g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse | 0.003 | |
| d3egfa_ | 53 | g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse | 0.004 | |
| d1moxc_ | 49 | g.3.11.1 (C:) Transforming growth factor alpha {Hu | 0.004 | |
| d1moxc_ | 49 | g.3.11.1 (C:) Transforming growth factor alpha {Hu | 0.004 | |
| d1nqlb_ | 48 | g.3.11.1 (B:) Epidermal growth factor, EGF {Human | 0.004 |
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 144 bits (363), Expect = 2e-39
Identities = 74/214 (34%), Positives = 117/214 (54%), Gaps = 4/214 (1%)
Query: 3 SISSGNVTRVKREMNLKTVLS-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR 61
I S + R + TV+S ++ P G+AVDW+ N+YWTD+ + V+ +G
Sbjct: 53 MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL---GTVSVADTKGV 109
Query: 62 KKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGI 121
K++TL ++P I ++P+ G M+WT+ G +I ++G + ++LV NIQWP GI
Sbjct: 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI 169
Query: 122 TIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTN 181
T+D S RLYW D K +I SI++NG +R + E P+ L VFED ++++
Sbjct: 170 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINE 229
Query: 182 NILKINKFGNSDFNVLANNLNRASDVLILQENKQ 215
I N+ SD N+LA NL D+++ Q
Sbjct: 230 AIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQ 263
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 127 bits (319), Expect = 2e-33
Identities = 52/199 (26%), Positives = 100/199 (50%), Gaps = 9/199 (4%)
Query: 2 ASISSGNVTRVKREMNLKT--VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE 59
IS ++ R T + +L P G+A+D +G+ ++WTD+ + I V+ ++
Sbjct: 53 TDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ---LDRIEVAKMD 109
Query: 60 GRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIK-PRISGASIDGKNKFNLVDNNIQWP 118
G ++R L +TGL P I +P+ G ++WT+ P+I + +DG N+ L +N+ P
Sbjct: 110 GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLP 169
Query: 119 TGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTY 178
G+T D S +L W D E +N R V + P+ + + NLY++ +
Sbjct: 170 NGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL---EGLQYPFAVTSYGKNLYYTDW 226
Query: 179 RTNNILKINKFGNSDFNVL 197
+TN+++ ++ + + +
Sbjct: 227 KTNSVIAMDLAISKEMDTF 245
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 77.2 bits (189), Expect = 3e-16
Identities = 49/195 (25%), Positives = 78/195 (40%), Gaps = 7/195 (3%)
Query: 21 VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80
+ G+A D V K +YWTD S +I ++L G + T++ L P IAL+
Sbjct: 31 LHIPAKVIIGLAFDCVDKVVYWTDI---SEPSIGRASLHGGEPTTIIRQDLGSPEGIALD 87
Query: 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWAD--PKAR 138
L +FWT+ + RI A +DG + L D + P GI D LYW D
Sbjct: 88 HLGRTIFWTDSQLD-RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNP 146
Query: 139 TIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLA 198
IE+ +++G +R ++ + F L + T+ +N +
Sbjct: 147 KIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVL 205
Query: 199 NNLNRASDVLILQEN 213
L V +N
Sbjct: 206 EGLQYPFAVTSYGKN 220
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.7 bits (172), Expect = 4e-14
Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 6/150 (4%)
Query: 23 SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPL 82
+ L +PRG+ D V NLYWTD R + I S ++G +R L L P + +
Sbjct: 119 TGLVNPRGIVTDPVRGNLYWTDWN-RDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAF 177
Query: 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIES 142
S ++ W + G R + + +++ +Q+P +T + LY+ D K ++ +
Sbjct: 178 SSQLCWVDAGTH-RAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIA 233
Query: 143 INLNGKDRFVVYHTEDNGYKPYKLEVFEDN 172
++L +H + Y + +
Sbjct: 234 MDLAISKEMDTFHPH-KQTRLYGITIALSQ 262
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.3 bits (106), Expect = 1e-05
Identities = 13/118 (11%), Positives = 37/118 (31%), Gaps = 5/118 (4%)
Query: 97 ISGASIDGKN-----KFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRF 151
I ++ + + G+ D + +YW D +I +L+G +
Sbjct: 12 IERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT 71
Query: 152 VVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLI 209
+ + + L+ ++++ + + I G + L ++
Sbjct: 72 TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVT 129
|
| >d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: E-selectin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (86), Expect = 2e-04
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 418 CLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYSQ 453
C ++ C G C+ C C +YG C+Y +
Sbjct: 4 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVR 39
|
| >d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: E-selectin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.4 bits (79), Expect = 0.002
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 389 NKCHNGGTCIATTQ--TCVCPPGFTGDTCQQ 417
C G C+ T TC C PGF G C+
Sbjct: 7 MSCSKQGECLETIGNYTCSCYPGFYGPECEY 37
|
| >d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: E-selectin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.0 bits (78), Expect = 0.002
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 508 CDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
C +C G C+ N C C + G CE
Sbjct: 4 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 36
|
| >d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: E-selectin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 33.2 bits (76), Expect = 0.004
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 553 NKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTERED 591
C CS G C+ G +C C P + G +C D
Sbjct: 2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRD 40
|
| >d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (86), Expect = 2e-04
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 418 CLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQ 450
C++ CQN C+++ +C C Y G +C+
Sbjct: 4 CVSNPCQNDATCLDQIGEFQCICMPGYEGVHCE 36
|
| >d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.4 bits (82), Expect = 8e-04
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 508 CDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
C + C N TC+ C C Y G CE
Sbjct: 4 CVSNPCQNDATCLDQIGEFQCICMPGYEGVHCE 36
|
| >d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.0 bits (81), Expect = 0.001
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 389 NKCHNGGTCIATTQ--TCVCPPGFTGDTCQ 416
N C N TC+ C+C PG+ G C+
Sbjct: 7 NPCQNDATCLDQIGEFQCICMPGYEGVHCE 36
|
| >d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 33.9 bits (78), Expect = 0.003
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 553 NKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQC 586
N+C N C N+ TC+ G+ C C+P Y G C
Sbjct: 2 NECVSNPCQNDATCLDQIGEFQCICMPGYEGVHC 35
|
| >d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (85), Expect = 3e-04
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 418 CLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQ 450
C + C NGG C + EC CP + GKNC+
Sbjct: 6 CESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
|
| >d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.2 bits (84), Expect = 4e-04
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 508 CDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
C++ CLNGG+C + + C CP + G+ CE
Sbjct: 6 CESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
|
| >d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (83), Expect = 5e-04
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 389 NKCHNGGTCIATTQ--TCVCPPGFTGDTCQ 416
N C NGG+C C CP GF G C+
Sbjct: 9 NPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
|
| >d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Score = 33.9 bits (78), Expect = 0.002
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 553 NKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQC 586
++C N C N G+C C C + GK C
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNC 37
|
| >d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (85), Expect = 3e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 418 CLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQ 450
C CQN G C + C C + + GKNC+
Sbjct: 3 CETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 35
|
| >d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (83), Expect = 6e-04
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 508 CDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
C+T C N G C C C + G+ CE
Sbjct: 3 CETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 35
|
| >d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.1 bits (81), Expect = 0.001
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 389 NKCHNGGTCIATTQ--TCVCPPGFTGDTCQ 416
+ C N G C TC C GF G C+
Sbjct: 6 SPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 35
|
| >d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Score = 33.5 bits (77), Expect = 0.004
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 553 NKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQC 586
++C + C N G C G+ +C CL + GK C
Sbjct: 1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNC 34
|
| >d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: E-selectin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (84), Expect = 3e-04
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 418 CLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQY 451
C N C G CV C C + G C+
Sbjct: 4 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 37
|
| >d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: E-selectin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.0 bits (78), Expect = 0.003
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 508 CDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECAV 543
C +C G C+ N CKC ++G +CE V
Sbjct: 4 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIV 39
|
| >d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: E-selectin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.0 bits (78), Expect = 0.003
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 389 NKCHNGGTCIATTQ--TCVCPPGFTGDTCQQ 417
C G C+ T TC C PGF+G C+Q
Sbjct: 7 TSCSGHGECVETINNYTCKCDPGFSGLKCEQ 37
|
| >d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.2 bits (84), Expect = 4e-04
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 418 CLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQ 450
C + C + G C++K +C+CP + G CQ
Sbjct: 3 CASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 35
|
| >d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.4 bits (82), Expect = 8e-04
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 508 CDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
C + CL+ G C+ C+CP+ +TG C+
Sbjct: 3 CASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 35
|
| >d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.3 bits (79), Expect = 0.002
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 389 NKCHNGGTCIATTQ--TCVCPPGFTGDTCQ 416
+ C + G C+ C CP GFTG CQ
Sbjct: 6 SPCLHNGRCLDKINEFQCECPTGFTGHLCQ 35
|
| >d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 33.1 bits (76), Expect = 0.004
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 553 NKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQC 586
++C + C +NG C+ + C+C ++G C
Sbjct: 1 DECASSPCLHNGRCLDKINEFQCECPTGFTGHLC 34
|
| >d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Pig (Sus scrofa) [TaxId: 9823]
Score = 35.8 bits (83), Expect = 4e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 418 CLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQ 450
C + CQNGG C ++ C C + G+NC+
Sbjct: 5 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 37
|
| >d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Pig (Sus scrofa) [TaxId: 9823]
Score = 35.4 bits (82), Expect = 8e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 508 CDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540
C + C NGG+C ++ +C C + GR CE
Sbjct: 5 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 37
|
| >d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Pig (Sus scrofa) [TaxId: 9823]
Score = 34.7 bits (80), Expect = 0.001
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 389 NKCHNGGTCIATTQ--TCVCPPGFTGDTCQ 416
+ C NGG+C Q C C P F G C+
Sbjct: 8 SPCQNGGSCKDQLQSYICFCLPAFEGRNCE 37
|
| >d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Pig (Sus scrofa) [TaxId: 9823]
Score = 33.9 bits (78), Expect = 0.002
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 553 NKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQC 586
++C + C N G+C C CLP + G+ C
Sbjct: 3 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 36
|
| >d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.9 bits (83), Expect = 6e-04
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 389 NKCHNGGTCIAT--TQTCVCPPGFTGDTCQQ 417
N C + G CI T + C C G+TG C+
Sbjct: 11 NPCEHAGKCINTLGSFECQCLQGYTGPRCEI 41
|
| >d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.7 bits (80), Expect = 0.001
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 423 CQNGGVCVNKTTGLECDCPKFYYGKNCQ 450
C++ G C+N EC C + Y G C+
Sbjct: 13 CEHAGKCINTLGSFECQCLQGYTGPRCE 40
|
| >d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 50 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Betacellulin-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.4 bits (79), Expect = 0.002
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 513 CLNGGTC-IPNSKNNVCKCPSQYTGRRCE 540
C+ G + + C C Y G RCE
Sbjct: 16 CIKGRCRFVVAEQTPSCVCDEGYIGARCE 44
|
| >d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 50 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Betacellulin-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.0 bits (78), Expect = 0.003
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 631 SCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQ 669
H+C G + + P C+C GY G RC+
Sbjct: 11 QYKHYCIKGRCR-----FVVAEQTPSCVCDEGYIGARCE 44
|
| >d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Length = 53 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Epidermal growth factor, EGF species: Mouse (Mus musculus) [TaxId: 10090]
Score = 34.1 bits (78), Expect = 0.003
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 388 ENKCHNGGTCIATTQ----TCVCPPGFTGDTCQ 416
+ C NGG C+ TC C G++GD CQ
Sbjct: 11 DGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
|
| >d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Length = 53 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Epidermal growth factor, EGF species: Mouse (Mus musculus) [TaxId: 10090]
Score = 33.7 bits (77), Expect = 0.004
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 504 SGKKCDTCT---CLNGGTCIPNSKNN--VCKCPSQYTGRRCE 540
S C + CLNGG C+ + C C Y+G RC+
Sbjct: 2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
|
| >d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 49 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Transforming growth factor alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 33.7 bits (77), Expect = 0.004
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 513 CLNGGTC-IPNSKNNVCKCPSQYTGRRCE 540
C +G + C C S Y G RCE
Sbjct: 15 CFHGTCRFLVQEDKPACVCHSGYVGARCE 43
|
| >d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 49 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Transforming growth factor alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 33.7 bits (77), Expect = 0.004
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 631 SCAHFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQ 669
S FCF+G L + KP C+C GY G RC+
Sbjct: 10 SHTQFCFHGTCR-----FLVQEDKPACVCHSGYVGARCE 43
|
| >d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} Length = 48 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Epidermal growth factor, EGF species: Human (Homo sapiens) [TaxId: 9606]
Score = 33.7 bits (77), Expect = 0.004
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 507 KCDTCT---CLNGGTC--IPNSKNNVCKCPSQYTGRRCE 540
+C CL+ G C I C C Y G RC+
Sbjct: 3 ECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ 41
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 713 | |||
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 100.0 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 99.94 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 99.93 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.76 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.75 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.68 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.68 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.59 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.53 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.52 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.51 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.45 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.43 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.29 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.98 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 98.91 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.87 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.7 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.68 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 98.64 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 98.58 | |
| d2vj3a2 | 39 | Neurogenic locus notch homolog protein 1, Notch1 { | 98.55 | |
| d1edmb_ | 39 | Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 | 98.54 | |
| d2c4fl1 | 37 | Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} | 98.53 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.49 | |
| d2vj3a1 | 42 | Neurogenic locus notch homolog protein 1, Notch1 { | 98.47 | |
| d2vj3a3 | 35 | Neurogenic locus notch homolog protein 1, Notch1 { | 98.45 | |
| d1xkba1 | 39 | Factor X, N-terminal module {Human (Homo sapiens) | 98.41 | |
| d2vj3a2 | 39 | Neurogenic locus notch homolog protein 1, Notch1 { | 98.38 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 98.37 | |
| d1xkba1 | 39 | Factor X, N-terminal module {Human (Homo sapiens) | 98.36 | |
| d2vj3a1 | 42 | Neurogenic locus notch homolog protein 1, Notch1 { | 98.34 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.32 | |
| d1edmb_ | 39 | Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 | 98.31 | |
| d2c4fl1 | 37 | Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} | 98.28 | |
| d2vj3a3 | 35 | Neurogenic locus notch homolog protein 1, Notch1 { | 98.26 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 98.23 | |
| d1g1sa2 | 40 | E-selectin, EGF-domain {Human (Homo sapiens) [TaxI | 98.23 | |
| d1g1ta2 | 39 | E-selectin, EGF-domain {Human (Homo sapiens) [TaxI | 98.22 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.14 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.06 | |
| d1autl1 | 48 | Activated protein c (autoprothrombin IIa) {Human ( | 98.05 | |
| d1g1ta2 | 39 | E-selectin, EGF-domain {Human (Homo sapiens) [TaxI | 98.03 | |
| d1emoa1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.01 | |
| d1g1sa2 | 40 | E-selectin, EGF-domain {Human (Homo sapiens) [TaxI | 97.99 | |
| d1tpga1 | 41 | Plasminogen activator (tissue-type), t-PA {Human ( | 97.99 | |
| d1q4ga2 | 42 | Prostaglandin H2 synthase-1, EGF-like module {Shee | 97.95 | |
| d1i0ua2 | 41 | Low density lipoprotein (LDL) receptor, different | 97.93 | |
| d1tpga1 | 41 | Plasminogen activator (tissue-type), t-PA {Human ( | 97.91 | |
| d1uzka1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.86 | |
| d1cvua2 | 41 | Prostaglandin H2 synthase-1, EGF-like module {Mous | 97.85 | |
| d1dx5i3 | 40 | Thrombomodulin, different EGF-like domains {Human | 97.84 | |
| d1autl1 | 48 | Activated protein c (autoprothrombin IIa) {Human ( | 97.81 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.81 | |
| d1lmja1 | 44 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.78 | |
| d1q4ga2 | 42 | Prostaglandin H2 synthase-1, EGF-like module {Shee | 97.75 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 97.75 | |
| d1cvua2 | 41 | Prostaglandin H2 synthase-1, EGF-like module {Mous | 97.74 | |
| d1nt0a3 | 45 | Mannose-binding protein associated serine protease | 97.74 | |
| d1szba2 | 45 | Mannose-binding protein associated serine protease | 97.74 | |
| d1emoa1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.71 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.7 | |
| d1nzia2 | 42 | Complement C1S component {Human (Homo sapiens) [Ta | 97.69 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 97.67 | |
| d1lmja2 | 42 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.67 | |
| d1apqa_ | 53 | Complement protease C1R {Human (Homo sapiens) [Tax | 97.66 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 97.62 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 97.61 | |
| d1uzka2 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.58 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 97.58 | |
| d3bpse1 | 40 | Low density lipoprotein (LDL) receptor, different | 97.54 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 97.49 | |
| d1uzka1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.48 | |
| d1gl4a2 | 40 | EGF-like domain of nidogen-1 {Mouse (Mus musculus) | 97.47 | |
| d1lmja2 | 42 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.44 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 97.43 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 97.42 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 97.39 | |
| d3egfa_ | 53 | Epidermal growth factor, EGF {Mouse (Mus musculus) | 97.39 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 97.38 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 97.36 | |
| d3egfa_ | 53 | Epidermal growth factor, EGF {Mouse (Mus musculus) | 97.32 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.3 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.25 | |
| d1uzka2 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.24 | |
| d1gl4a2 | 40 | EGF-like domain of nidogen-1 {Mouse (Mus musculus) | 97.22 | |
| d1haea_ | 63 | Heregulin-alpha, EGF-like domain {Human (Homo sapi | 97.21 | |
| d1haea_ | 63 | Heregulin-alpha, EGF-like domain {Human (Homo sapi | 97.2 | |
| d1nqlb_ | 48 | Epidermal growth factor, EGF {Human (Homo sapiens) | 97.17 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.14 | |
| d1emoa2 | 39 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.12 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.1 | |
| d1lmja1 | 44 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.08 | |
| d1nqlb_ | 48 | Epidermal growth factor, EGF {Human (Homo sapiens) | 97.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.94 | |
| d1dx5i3 | 40 | Thrombomodulin, different EGF-like domains {Human | 96.87 | |
| d1szba2 | 45 | Mannose-binding protein associated serine protease | 96.86 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 96.74 | |
| d1nt0a3 | 45 | Mannose-binding protein associated serine protease | 96.73 | |
| d1i0ua2 | 41 | Low density lipoprotein (LDL) receptor, different | 96.71 | |
| d1apqa_ | 53 | Complement protease C1R {Human (Homo sapiens) [Tax | 96.68 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 96.62 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 96.54 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 96.38 | |
| d1ioxa_ | 50 | Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606] | 96.33 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 96.3 | |
| d1autl2 | 50 | Activated protein c (autoprothrombin IIa) {Human ( | 96.26 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.21 | |
| d1k36a_ | 46 | Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI | 96.19 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 96.18 | |
| d1moxc_ | 49 | Transforming growth factor alpha {Human (Homo sapi | 96.05 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.05 | |
| d1emoa2 | 39 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 95.99 | |
| d3bpse1 | 40 | Low density lipoprotein (LDL) receptor, different | 95.97 | |
| d1ijqa2 | 50 | Low density lipoprotein (LDL) receptor, different | 95.96 | |
| d2i9aa1 | 40 | Plasminogen activator (urokinase-type) {Human (Hom | 95.93 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 95.92 | |
| d2p3ua1 | 51 | Factor X, N-terminal module {Human (Homo sapiens) | 95.85 | |
| d1kigl_ | 51 | Factor X, N-terminal module {Cow (Bos taurus) [Tax | 95.78 | |
| d1nzia2 | 42 | Complement C1S component {Human (Homo sapiens) [Ta | 95.72 | |
| d1k36a_ | 46 | Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI | 95.69 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 95.45 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 95.32 | |
| d1ioxa_ | 50 | Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606] | 95.2 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 95.08 | |
| d2i9aa1 | 40 | Plasminogen activator (urokinase-type) {Human (Hom | 94.99 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 94.98 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 94.79 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 94.77 | |
| d1moxc_ | 49 | Transforming growth factor alpha {Human (Homo sapi | 94.68 | |
| d1xdtr_ | 41 | Heparin-binding epidermal growth factor, HBEGF {Hu | 94.58 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 94.55 | |
| d1jv2b4 | 31 | Integrin beta EGF-like domains {Human (Homo sapien | 94.33 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 94.28 | |
| d1xdtr_ | 41 | Heparin-binding epidermal growth factor, HBEGF {Hu | 94.06 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 93.72 | |
| d1jv2b4 | 31 | Integrin beta EGF-like domains {Human (Homo sapien | 93.64 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 93.46 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 93.25 | |
| d2bz6l1 | 53 | Coagulation factor VIIa {Human (Homo sapiens) [Tax | 93.25 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 92.91 | |
| d1rfnb_ | 57 | Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 | 92.82 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 92.75 | |
| d1jv2b5 | 43 | Integrin beta EGF-like domains {Human (Homo sapien | 92.74 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 92.53 | |
| d1jv2b5 | 43 | Integrin beta EGF-like domains {Human (Homo sapien | 91.8 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 91.71 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 91.56 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 91.49 | |
| d1l3ya_ | 41 | Integrin beta EGF-like domains {Human (Homo sapien | 91.25 | |
| d1l3ya_ | 41 | Integrin beta EGF-like domains {Human (Homo sapien | 90.98 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 90.25 | |
| d1kloa1 | 55 | Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: | 90.06 | |
| d1autl2 | 50 | Activated protein c (autoprothrombin IIa) {Human ( | 89.26 | |
| d1kloa3 | 51 | Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: | 89.23 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 88.47 | |
| d1kigl_ | 51 | Factor X, N-terminal module {Cow (Bos taurus) [Tax | 88.29 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 88.08 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 87.99 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 87.92 | |
| d2p3ua1 | 51 | Factor X, N-terminal module {Human (Homo sapiens) | 86.91 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 85.07 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 84.57 | |
| d1kloa1 | 55 | Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: | 84.23 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 83.97 | |
| d1ijqa2 | 50 | Low density lipoprotein (LDL) receptor, different | 83.62 | |
| d1kloa2 | 56 | Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: | 83.13 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 82.52 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 82.42 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 81.46 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 81.26 |
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.5e-33 Score=279.99 Aligned_cols=212 Identities=33% Similarity=0.671 Sum_probs=192.0
Q ss_pred CcccCCceeEEEccCcc------cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcc
Q psy6570 2 ASISSGNVTRVKREMNL------KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPY 75 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~------~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~ 75 (713)
+|...+.|++.++++.. .++...+..|.|||+||.+++|||+|. ..++|.+++++|+..+.++...+..|.
T Consensus 47 ~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~---~~~~I~v~~~~g~~~~~~~~~~~~~P~ 123 (266)
T d1ijqa1 47 SDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS---VLGTVSVADTKGVKRKTLFRENGSKPR 123 (266)
T ss_dssp EETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET---TTTEEEEEETTSSSEEEEEECTTCCEE
T ss_pred EECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEec---CCCEEEeEecCCceEEEEEcCCCCCcc
Confidence 56677889988887621 234667889999999999999999998 788999999999998888888889999
Q ss_pred eEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEe
Q psy6570 76 DIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYH 155 (713)
Q Consensus 76 ~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~ 155 (713)
+|++||.+|+|||++++..++|+|++|||+.+++++...+..|+||++|+.+++|||+|...++|++++++|++++++..
T Consensus 124 ~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~ 203 (266)
T d1ijqa1 124 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE 203 (266)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE
T ss_pred eEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEe
Confidence 99999999999999998878999999999999999988899999999999999999999999999999999999888877
Q ss_pred cCCCCccceeeeeeCCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEEeecccc
Q psy6570 156 TEDNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQA 216 (713)
Q Consensus 156 ~~~~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~ 216 (713)
....+.+|++|++++++|||+|+..++|+++++.++...+.+..++..|.+|+++|+.+||
T Consensus 204 ~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~~~~p~~i~v~~~~~QP 264 (266)
T d1ijqa1 204 DEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQP 264 (266)
T ss_dssp CTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGGSC
T ss_pred CCCcccccEEEEEECCEEEEEECCCCeEEEEECCCCcceEEEEcCCCCceEEEEECCccCC
Confidence 7666789999999999999999999999999999998888898889999999999999995
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1e-31 Score=268.38 Aligned_cols=206 Identities=26% Similarity=0.554 Sum_probs=183.9
Q ss_pred CcccCCceeEEEccCcc-cEE-ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEE
Q psy6570 2 ASISSGNVTRVKREMNL-KTV-LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIAL 79 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~-~~~-~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iav 79 (713)
+|...++|+++++++.. +++ ..++..|.+||+||.+++|||+|. ..++|.+.+++|+.+++++...+..|.+|++
T Consensus 53 sd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~---~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~v 129 (263)
T d1npea_ 53 TDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS---QLDRIEVAKMDGTQRRVLFDTGLVNPRGIVT 129 (263)
T ss_dssp EETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred EECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEecc---CCCEEEEEecCCceEEEEecccccCCcEEEE
Confidence 57778899999999854 333 457889999999999999999998 7889999999999988888888899999999
Q ss_pred cCCCCcEEEEccCC-CCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCC
Q psy6570 80 EPLSGRMFWTELGI-KPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTED 158 (713)
Q Consensus 80 D~~~~~ly~td~~~-~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~ 158 (713)
||.+++|||++++. .++|+|+++||+.+++++..++..|+|||||+.+++|||+|...++|++++++|..++++...
T Consensus 130 dp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~-- 207 (263)
T d1npea_ 130 DPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-- 207 (263)
T ss_dssp ETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC--
T ss_pred ecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECC--
Confidence 99999999999874 457999999999999999888999999999999999999999999999999999999888765
Q ss_pred CCccceeeeeeCCeEEEEeCCCCcEEEEcccCCCcceee-eccccccccEEEEeec
Q psy6570 159 NGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVL-ANNLNRASDVLILQEN 213 (713)
Q Consensus 159 ~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~i~v~~~~ 213 (713)
+.+|++|++++++|||+|+..++|+++++.++....++ .....+|.+|++.|+.
T Consensus 208 -~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~~ 262 (263)
T d1npea_ 208 -LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (263)
T ss_dssp -CCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred -CCCcEEEEEECCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeCCC
Confidence 66899999999999999999999999999887766554 3566889999999864
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=1.4e-25 Score=223.60 Aligned_cols=203 Identities=27% Similarity=0.382 Sum_probs=173.0
Q ss_pred CCceeEEEccCcc-------cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEE
Q psy6570 6 SGNVTRVKREMNL-------KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIA 78 (713)
Q Consensus 6 ~~~I~~~~~~~~~-------~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia 78 (713)
.+.|.++.+++.. ..+......+.+|++|+.+++|||+|. ..++|.+++++|+..++++..++..|.+||
T Consensus 9 ~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~---~~~~I~~~~l~g~~~~~v~~~~~~~p~~iA 85 (263)
T d1npea_ 9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDI---SEPSIGRASLHGGEPTTIIRQDLGSPEGIA 85 (263)
T ss_dssp EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEET---TTTEEEEEESSSCCCEEEECTTCCCEEEEE
T ss_pred CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEEC---CCCeEEEEEcccCCcEEEEEeccccccEEE
Confidence 4689999998743 123444556789999999999999999 789999999999999988888889999999
Q ss_pred EcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCC--CcEEEEeCCCCceeEEEec
Q psy6570 79 LEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKA--RTIESINLNGKDRFVVYHT 156 (713)
Q Consensus 79 vD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~--~~I~~~~~~g~~~~~~~~~ 156 (713)
||+.++.|||+|.... +|.++++||+.+++++...+..|.+|+|||..++|||++.+. .+|++++++|+.++.+...
T Consensus 86 vD~~~~~lY~~d~~~~-~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~ 164 (263)
T d1npea_ 86 LDHLGRTIFWTDSQLD-RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD 164 (263)
T ss_dssp EETTTTEEEEEETTTT-EEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT
T ss_pred EeccCCeEEEeccCCC-EEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeee
Confidence 9999999999998877 999999999999999888889999999999999999999754 4699999999998888755
Q ss_pred CCCCccceeeeee--CCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEEeeccc
Q psy6570 157 EDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQENKQ 215 (713)
Q Consensus 157 ~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q 215 (713)
.+..|.+|+++ +++|||+|...++|.+++..+... ..+..++..|.+|+++....+
T Consensus 165 --~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~-~~v~~~~~~P~~lav~~~~lY 222 (263)
T d1npea_ 165 --NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR-RKVLEGLQYPFAVTSYGKNLY 222 (263)
T ss_dssp --TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-EEEEECCCSEEEEEEETTEEE
T ss_pred --cccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCe-EEEECCCCCcEEEEEECCEEE
Confidence 35678888876 788999999999999999876554 445567788999998866555
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=5.3e-25 Score=219.94 Aligned_cols=205 Identities=19% Similarity=0.344 Sum_probs=171.6
Q ss_pred CCceeEEEccCcc-cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCce----EEEEEcCCCCCcceEEEc
Q psy6570 6 SGNVTRVKREMNL-KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK----KRTLLNTGLNEPYDIALE 80 (713)
Q Consensus 6 ~~~I~~~~~~~~~-~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~----~~~l~~~~~~~p~~iavD 80 (713)
...|+++++++.. ..+++++..|.+|++|+.+++|||+|. ..+.|++.+++|.. .++++..++..|.+||||
T Consensus 9 ~~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~---~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD 85 (266)
T d1ijqa1 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL---SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 85 (266)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEET---TTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred CCeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEEC---CCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEe
Confidence 4579999999854 566789999999999999999999998 78899999998743 456666778899999999
Q ss_pred CCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCC-CcEEEEeCCCCceeEEEecCCC
Q psy6570 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKA-RTIESINLNGKDRFVVYHTEDN 159 (713)
Q Consensus 81 ~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~-~~I~~~~~~g~~~~~~~~~~~~ 159 (713)
|.++.|||+|...+ +|++++++|..++.++...+..|.+|+||+..++|||++... .+|+++++||+.++.+... .
T Consensus 86 ~~~~~lY~~d~~~~-~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~--~ 162 (266)
T d1ijqa1 86 WIHSNIYWTDSVLG-TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE--N 162 (266)
T ss_dssp TTTTEEEEEETTTT-EEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS--S
T ss_pred eccceEEEEecCCC-EEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccc--c
Confidence 99999999998877 999999999999898888899999999999999999999754 5899999999999888764 3
Q ss_pred Cccceeeeee--CCeEEEEeCCCCcEEEEcccCCCcceeeec--cccccccEEEEeecccc
Q psy6570 160 GYKPYKLEVF--EDNLYFSTYRTNNILKINKFGNSDFNVLAN--NLNRASDVLILQENKQA 216 (713)
Q Consensus 160 ~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~i~v~~~~~q~ 216 (713)
+..|.+|+++ .++|||+|...+.|.+++..|.....++.. .+..|.+|+++....++
T Consensus 163 ~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~ 223 (266)
T d1ijqa1 163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFW 223 (266)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEE
T ss_pred cceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEE
Confidence 5678787776 778999999999999999887655444433 35678899988765553
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.76 E-value=2e-18 Score=171.80 Aligned_cols=161 Identities=21% Similarity=0.356 Sum_probs=137.8
Q ss_pred ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEe
Q psy6570 22 LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGAS 101 (713)
Q Consensus 22 ~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~ 101 (713)
...+..|.+|++|+ .++|||+|. ...++.+++.++.....+...++..|.+|++|+ ++.|||+++... +|.+++
T Consensus 94 ~~~~~~p~~iavd~-~g~i~v~d~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~~~v~~~~~~-~i~~~d 167 (260)
T d1rwia_ 94 FDGLNYPEGLAVDT-QGAVYVADR---GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNN-RVVKLE 167 (260)
T ss_dssp CCSCCSEEEEEECT-TCCEEEEEG---GGTEEEEECTTCSSCEECCCCSCCSCCEEEECT-TCCEEEEEGGGT-EEEEEC
T ss_pred eeeeeecccccccc-cceeEeecc---ccccccccccccceeeeeeecccCCcceeeecC-CCCEeeeccccc-cccccc
Confidence 44678899999997 478999998 788999999999887766666789999999997 678999998877 999999
Q ss_pred cCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeee-CCeEEEEeCCC
Q psy6570 102 IDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRT 180 (713)
Q Consensus 102 ~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~ 180 (713)
++++.+.++....+..|.||++|+ +++|||+|..+++|++++.++...+++... .+..|.+|+++ ++.|||+|+.+
T Consensus 168 ~~~~~~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~--~~~~P~~i~~d~~g~l~vad~~~ 244 (260)
T d1rwia_ 168 AESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFT--GLNTPLAVAVDSDRTVYVADRGN 244 (260)
T ss_dssp TTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEECTTCSCCEECCCC--SCCCEEEEEECTTCCEEEEEGGG
T ss_pred cccceeeeeeccccCCCccceeee-eeeeeeeecCCCEEEEEeCCCCeEEEEccC--CCCCeEEEEEeCCCCEEEEECCC
Confidence 999888777667899999999995 578999999999999999998876655433 36789999998 56899999999
Q ss_pred CcEEEEcccCC
Q psy6570 181 NNILKINKFGN 191 (713)
Q Consensus 181 ~~i~~~~~~~~ 191 (713)
++|++++..+.
T Consensus 245 ~rI~~i~~~~~ 255 (260)
T d1rwia_ 245 DRVVKLTSLEH 255 (260)
T ss_dssp TEEEEECCCGG
T ss_pred CEEEEEeCCCC
Confidence 99999987654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.75 E-value=1.6e-17 Score=165.21 Aligned_cols=197 Identities=21% Similarity=0.306 Sum_probs=149.9
Q ss_pred cCCceeEEEccCcccEE--ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCC
Q psy6570 5 SSGNVTRVKREMNLKTV--LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPL 82 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~~~--~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~ 82 (713)
.+++|.+++.++..... ...+..|.||++|+. ++|||+|. .... .+...++....++....+..|.+|++|+
T Consensus 34 ~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~-g~i~v~d~---~~~~-i~~~~~~~~~~~~~~~~~~~p~~iavd~- 107 (260)
T d1rwia_ 34 MYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGA-GTVYVTDF---NNRV-VTLAAGSNNQTVLPFDGLNYPEGLAVDT- 107 (260)
T ss_dssp SSCEEEEEC----CEEECCCCSCCSCCCEEECTT-CCEEEEET---TTEE-EEECTTCSCCEECCCCSCCSEEEEEECT-
T ss_pred CCCEEEEEcCCCceEEEeccCCccCceEEEEcCC-CCEEEeee---eece-eeeeeeccceeeeeeeeeeecccccccc-
Confidence 34567777766654443 456788999999975 78999998 4444 4455556555555555678999999996
Q ss_pred CCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 83 ~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
++.|||+|.... ++.+++.++..........+..|.+|++|+ +++|||++....+|.+++.++..+..+... .+..
T Consensus 108 ~g~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~--~~~~ 183 (260)
T d1rwia_ 108 QGAVYVADRGNN-RVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFT--DITA 183 (260)
T ss_dssp TCCEEEEEGGGT-EEEEECTTCSSCEECCCCSCCSCCEEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCS--SCCS
T ss_pred cceeEeeccccc-cccccccccceeeeeeecccCCcceeeecC-CCCEeeeccccccccccccccceeeeeecc--ccCC
Confidence 778999998877 899999999887776666789999999996 668999999999999999999876655433 4678
Q ss_pred ceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEEe
Q psy6570 163 PYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQ 211 (713)
Q Consensus 163 p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~ 211 (713)
|.+|+++ +++|||+++.+++|+++.+.+..........+..|.+|++..
T Consensus 184 p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~ 233 (260)
T d1rwia_ 184 PWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS 233 (260)
T ss_dssp EEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECT
T ss_pred CccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeC
Confidence 9999997 569999999999999998766544444445677788887653
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.68 E-value=5e-16 Score=158.44 Aligned_cols=201 Identities=17% Similarity=0.206 Sum_probs=149.5
Q ss_pred cccCCceeEEEccCcccEEe------cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcC----CCC
Q psy6570 3 SISSGNVTRVKREMNLKTVL------SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNT----GLN 72 (713)
Q Consensus 3 d~~~~~I~~~~~~~~~~~~~------~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~----~~~ 72 (713)
++.+++|+|+++++...+++ .....|.||++|+.+++||+++. .+.|.+++++|....++... .+.
T Consensus 42 ~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~----~~~i~~~~~~g~~~~~~~~~~~g~~~~ 117 (314)
T d1pjxa_ 42 GKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM----RLGLLVVQTDGTFEEIAKKDSEGRRMQ 117 (314)
T ss_dssp TEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET----TTEEEEEETTSCEEECCSBCTTSCBCB
T ss_pred cccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC----CCeEEEEeCCCcEEEEEeccccccccC
Confidence 45578899999987654332 12346999999998888999986 46799999999876654332 256
Q ss_pred CcceEEEcCCCCcEEEEccCC--------------CCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCC----eEEEEc
Q psy6570 73 EPYDIALEPLSGRMFWTELGI--------------KPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQ----RLYWAD 134 (713)
Q Consensus 73 ~p~~iavD~~~~~ly~td~~~--------------~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~----~LY~~d 134 (713)
.|++|++|+ +|.|||||... .++|++++.||+..+.+ ..+..|+||++++..+ +||++|
T Consensus 118 ~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~--~~~~~pNGi~~~~d~d~~~~~lyv~d 194 (314)
T d1pjxa_ 118 GCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD--TAFQFPNGIAVRHMNDGRPYQLIVAE 194 (314)
T ss_dssp CCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEE--EEESSEEEEEEEECTTSCEEEEEEEE
T ss_pred CCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEeecCceeEee--CCcceeeeeEECCCCCcceeEEEEEe
Confidence 799999996 68999998431 23799999998654333 4678899999987655 799999
Q ss_pred CCCCcEEEEeCCCCc----eeEEEecC-CCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEE
Q psy6570 135 PKARTIESINLNGKD----RFVVYHTE-DNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVL 208 (713)
Q Consensus 135 ~~~~~I~~~~~~g~~----~~~~~~~~-~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~ 208 (713)
..+++|+++++++.. ++++.... .....|.||+++ +++||++++..++|+++++.++.....+......|.+++
T Consensus 195 ~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~a 274 (314)
T d1pjxa_ 195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLH 274 (314)
T ss_dssp TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEE
T ss_pred ecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEE
Confidence 999999999875432 23333321 224468999997 679999999999999999887776666666556777776
Q ss_pred EE
Q psy6570 209 IL 210 (713)
Q Consensus 209 v~ 210 (713)
+-
T Consensus 275 fg 276 (314)
T d1pjxa_ 275 FK 276 (314)
T ss_dssp EC
T ss_pred Ee
Confidence 63
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.68 E-value=6.5e-16 Score=158.11 Aligned_cols=188 Identities=18% Similarity=0.273 Sum_probs=144.6
Q ss_pred CCcccCCceeEEEccCcc--cEEecCCCCCceEEEeccCCeEEEeecCC-CCCCeEEEEecCCceEEEEEcC--CCCCcc
Q psy6570 1 MASISSGNVTRVKREMNL--KTVLSNLHDPRGVAVDWVGKNLYWTDAGG-RSSNNIMVSTLEGRKKRTLLNT--GLNEPY 75 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~~--~~~~~~~~~p~gla~D~~~~~ly~td~~~-~~~~~I~~~~~~G~~~~~l~~~--~~~~p~ 75 (713)
|+|+..++|+|+++++.. ..+......|.||++++. ++||+++.+. +....|...+.++.....++.. ....|+
T Consensus 55 ~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~d-G~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~n 133 (319)
T d2dg1a1 55 LLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKD-GRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID 133 (319)
T ss_dssp EEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTT-SCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE
T ss_pred EEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCC-CCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCc
Confidence 468889999999998864 334667778999999974 7899987632 1356788888888776655532 367899
Q ss_pred eEEEcCCCCcEEEEccCC-----CCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCC--
Q psy6570 76 DIALEPLSGRMFWTELGI-----KPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGK-- 148 (713)
Q Consensus 76 ~iavD~~~~~ly~td~~~-----~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~-- 148 (713)
++++|+ +|+|||+|... ...|++++.+|+..+.++. .+..|+||+++++++.|||+|...++|++++++..
T Consensus 134 d~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~-~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~ 211 (319)
T d2dg1a1 134 DMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGV 211 (319)
T ss_dssp EEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSS
T ss_pred ceeEEe-ccceeecccccccccCcceeEEEecccceeEEEee-ccceeeeeeeccccceEEEecccCCceEEEEEcCCCc
Confidence 999996 67899998653 2369999999987766654 67889999999999999999999999999987643
Q ss_pred ceeE----EEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCC
Q psy6570 149 DRFV----VYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGN 191 (713)
Q Consensus 149 ~~~~----~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~ 191 (713)
.... +.........|.||+++ +++||++++..++|.++++.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~ 259 (319)
T d2dg1a1 212 TIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY 259 (319)
T ss_dssp SEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSC
T ss_pred eeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCc
Confidence 2211 11122234569999998 6799999999999999998643
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.59 E-value=3.6e-14 Score=142.01 Aligned_cols=205 Identities=17% Similarity=0.271 Sum_probs=154.0
Q ss_pred CCcccCCceeEEEccCcccEEe-------cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCC
Q psy6570 1 MASISSGNVTRVKREMNLKTVL-------SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNE 73 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~~~~~~-------~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~ 73 (713)
|||..+++|.+++++|.....+ .....|.+++++...+.++|+... ..++|.+.+.+|.....+....+..
T Consensus 38 VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~g~~~~~~~~~~~~~ 115 (279)
T d1q7fa_ 38 VADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS--PTHQIQIYNQYGQFVRKFGATILQH 115 (279)
T ss_dssp EEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG--GGCEEEEECTTSCEEEEECTTTCSC
T ss_pred EEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccC--CccccccccccccceeecCCCcccc
Confidence 5778889999999888643222 234468999988777777776542 5679999999999888776667899
Q ss_pred cceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEE-eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeE
Q psy6570 74 PYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLV-DNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFV 152 (713)
Q Consensus 74 p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~-~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~ 152 (713)
|.+|++|+ ++.||+++.... +|.+.+.+|+....+. ...+..|.+|++| .+++||++|...++|++++.+|.....
T Consensus 116 p~~~avd~-~G~i~v~~~~~~-~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d-~~g~i~v~d~~~~~V~~~d~~G~~~~~ 192 (279)
T d1q7fa_ 116 PRGVTVDN-KGRIIVVECKVM-RVIIFDQNGNVLHKFGCSKHLEFPNGVVVN-DKQEIFISDNRAHCVKVFNYEGQYLRQ 192 (279)
T ss_dssp EEEEEECT-TSCEEEEETTTT-EEEEECTTSCEEEEEECTTTCSSEEEEEEC-SSSEEEEEEGGGTEEEEEETTCCEEEE
T ss_pred cceecccc-CCcEEEEeeccc-eeeEeccCCceeecccccccccccceeeec-cceeEEeeeccccceeeeecCCceeee
Confidence 99999995 788999998777 9999999998766654 3457889999999 467999999999999999999987666
Q ss_pred EEecCCCCccceeeeee-CCeEEEEeCCCC-cEEEEcccCCCcceeeecc--ccccccEEEEee
Q psy6570 153 VYHTEDNGYKPYKLEVF-EDNLYFSTYRTN-NILKINKFGNSDFNVLANN--LNRASDVLILQE 212 (713)
Q Consensus 153 ~~~~~~~~~~p~~i~~~-~~~ly~td~~~~-~i~~~~~~~~~~~~~~~~~--~~~~~~i~v~~~ 212 (713)
+.... .+..|.+|+++ +++||++|+..+ +|.++++.+. .+..+... ...|.+|++...
T Consensus 193 ~g~~g-~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~-~~~~~~~~~~~~~p~~vav~~d 254 (279)
T d1q7fa_ 193 IGGEG-ITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-LISALESKVKHAQCFDVALMDD 254 (279)
T ss_dssp ESCTT-TSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-EEEEEEESSCCSCEEEEEEETT
T ss_pred ecccc-cccCCcccccccCCeEEEEECCCCcEEEEECCCCC-EEEEEeCCCCCCCEeEEEEeCC
Confidence 54332 47789999997 678999997654 5777776543 23333222 345666665443
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.53 E-value=1.3e-13 Score=139.65 Aligned_cols=201 Identities=13% Similarity=0.038 Sum_probs=146.7
Q ss_pred CCcccCCceeEEEccCcccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecC---CceEEEEEcCCCCCcceE
Q psy6570 1 MASISSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLE---GRKKRTLLNTGLNEPYDI 77 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~---G~~~~~l~~~~~~~p~~i 77 (713)
|++...++|+++++++..+.+......|.+|++++. ++||+++. ..+.|.+++++ +.............|++|
T Consensus 43 vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~d-G~l~v~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i 118 (302)
T d2p4oa1 43 VTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSN-GDLVATGW---NADSIPVVSLVKSDGTVETLLTLPDAIFLNGI 118 (302)
T ss_dssp EEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTT-SCEEEEEE---CTTSCEEEEEECTTSCEEEEEECTTCSCEEEE
T ss_pred EEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCC-CCeEEEec---CCceEEEEEecccccceeeccccCCcccccee
Confidence 467788999999999987777777889999999975 67999988 55665555543 444444444556789999
Q ss_pred EEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEe----------CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC
Q psy6570 78 ALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVD----------NNIQWPTGITIDYPSQRLYWADPKARTIESINLNG 147 (713)
Q Consensus 78 avD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~----------~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g 147 (713)
++|+ ++++|+++.... +|++.++++........ ..+..|++|++| .+.|||++...++|++++.++
T Consensus 119 ~~~~-~g~~~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~ 194 (302)
T d2p4oa1 119 TPLS-DTQYLTADSYRG-AIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDS 194 (302)
T ss_dssp EESS-SSEEEEEETTTT-EEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCT
T ss_pred EEcc-CCCEEeeccccc-cceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEeccccc
Confidence 9996 689999998776 99999988766555443 124567899988 689999999999999999877
Q ss_pred CceeEEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcc-eeeeccccccccEEE
Q psy6570 148 KDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDF-NVLANNLNRASDVLI 209 (713)
Q Consensus 148 ~~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~i~v 209 (713)
...............|.+|+++ ++.||++++..++|++++..+.... ..+...+..|+.+++
T Consensus 195 ~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vaf 258 (302)
T d2p4oa1 195 TDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAF 258 (302)
T ss_dssp TSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEE
T ss_pred cccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEE
Confidence 4322111110124578899987 6689999999999999988654322 222335566666665
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.52 E-value=1.2e-13 Score=138.25 Aligned_cols=182 Identities=21% Similarity=0.183 Sum_probs=140.4
Q ss_pred CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcC-----CCCCcceEEEcCCCCcEEEEccCCCCeEE
Q psy6570 24 NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNT-----GLNEPYDIALEPLSGRMFWTELGIKPRIS 98 (713)
Q Consensus 24 ~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~-----~~~~p~~iavD~~~~~ly~td~~~~~~I~ 98 (713)
.+..|.|||+|+ .++|||+|. .+++|.+++++|+..+.+... ....|.+++++...+.++|+....+.+|.
T Consensus 21 ~f~~P~gvavd~-dg~i~VaD~---~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~ 96 (279)
T d1q7fa_ 21 QFTEPSGVAVNA-QNDIIVADT---NNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 96 (279)
T ss_dssp CBSCEEEEEECT-TCCEEEEEG---GGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred eECCccEEEEcC-CCCEEEEEC---CCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccc
Confidence 478899999997 578999999 789999999999887766432 24579999988777777776655444899
Q ss_pred EEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeee-CCeEEEEe
Q psy6570 99 GASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFST 177 (713)
Q Consensus 99 ~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~-~~~ly~td 177 (713)
+.+.+|.....+....+..|.++++| .+++||+++...++|.+++.+|+....+... ..+..|.+++++ ++.||+++
T Consensus 97 ~~~~~g~~~~~~~~~~~~~p~~~avd-~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~-~~~~~~~~i~~d~~g~i~v~d 174 (279)
T d1q7fa_ 97 IYNQYGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQNGNVLHKFGCS-KHLEFPNGVVVNDKQEIFISD 174 (279)
T ss_dssp EECTTSCEEEEECTTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECTTSCEEEEEECT-TTCSSEEEEEECSSSEEEEEE
T ss_pred cccccccceeecCCCcccccceeccc-cCCcEEEEeeccceeeEeccCCceeeccccc-ccccccceeeeccceeEEeee
Confidence 99999987777656678899999999 4678999999999999999999876655433 246788999987 56899999
Q ss_pred CCCCcEEEEcccCCCcceeee-ccccccccEEEEe
Q psy6570 178 YRTNNILKINKFGNSDFNVLA-NNLNRASDVLILQ 211 (713)
Q Consensus 178 ~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~i~v~~ 211 (713)
+..+.|++++..+....++-. ..+..|.+|++..
T Consensus 175 ~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~ 209 (279)
T d1q7fa_ 175 NRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINS 209 (279)
T ss_dssp GGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECT
T ss_pred ccccceeeeecCCceeeeecccccccCCccccccc
Confidence 999999999876543222211 1345566665543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.51 E-value=4.3e-13 Score=134.96 Aligned_cols=199 Identities=13% Similarity=0.087 Sum_probs=145.4
Q ss_pred CCcccCCceeEEEccCcccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcC----CCCCcce
Q psy6570 1 MASISSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNT----GLNEPYD 76 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~----~~~~p~~ 76 (713)
|+|+..++|+|+++++....+...-..|.+|+++. .+.|+++.. +.|.++++++...+.+... ....|++
T Consensus 34 wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~-dg~l~va~~-----~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd 107 (295)
T d2ghsa1 34 WFNILERELHELHLASGRKTVHALPFMGSALAKIS-DSKQLIASD-----DGLFLRDTATGVLTLHAELESDLPGNRSND 107 (295)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEE-TTEEEEEET-----TEEEEEETTTCCEEEEECSSTTCTTEEEEE
T ss_pred EEECCCCEEEEEECCCCeEEEEECCCCcEEEEEec-CCCEEEEEe-----CccEEeecccceeeEEeeeecCCCccccee
Confidence 46888999999999987666655566788999985 477877754 4799999887666666542 2456899
Q ss_pred EEEcCCCCcEEEEccCC-----CCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCC---
Q psy6570 77 IALEPLSGRMFWTELGI-----KPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGK--- 148 (713)
Q Consensus 77 iavD~~~~~ly~td~~~-----~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~--- 148 (713)
+++|+ +|+||+++... .+.+++.. +|+. +.+ ...+..|+|+++++.++.|||+|+..++|++++++..
T Consensus 108 ~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~-~g~~-~~~-~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~ 183 (295)
T d2ghsa1 108 GRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKV-TKL-FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGL 183 (295)
T ss_dssp EEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEE-EEE-EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCC
T ss_pred eEECC-CCCEEEEeccccccccceeEeeec-CCcE-EEE-eeccCCcceeeecCCCceEEEeecccceeeEeeecccccc
Confidence 99996 67888887432 23455554 4433 233 3467889999999999999999999999999998753
Q ss_pred ---ceeEEEecCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEE
Q psy6570 149 ---DRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLIL 210 (713)
Q Consensus 149 ---~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~ 210 (713)
.+..+.........|.|++++ +++||++.+..++|.++++.+ .....+......|+.+.+-
T Consensus 184 ~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G-~~~~~i~lP~~~~T~~~FG 248 (295)
T d2ghsa1 184 PTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG-NHIARYEVPGKQTTCPAFI 248 (295)
T ss_dssp BSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC-CEEEEEECSCSBEEEEEEE
T ss_pred cccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCC-cEeeEecCCCCceEEEEEe
Confidence 233444443345679999998 679999999999999999864 4455555555566666554
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.45 E-value=7.6e-13 Score=134.41 Aligned_cols=176 Identities=18% Similarity=0.204 Sum_probs=129.0
Q ss_pred CceeEEEccCcccEEec------CCCCCceEEEeccCCeEEEeecCCC------------CCCeEEEEecCCceEEEEEc
Q psy6570 7 GNVTRVKREMNLKTVLS------NLHDPRGVAVDWVGKNLYWTDAGGR------------SSNNIMVSTLEGRKKRTLLN 68 (713)
Q Consensus 7 ~~I~~~~~~~~~~~~~~------~~~~p~gla~D~~~~~ly~td~~~~------------~~~~I~~~~~~G~~~~~l~~ 68 (713)
+.|.++++++...+++. .+..|.+|++|+. ++||++|.... ..++|++++.+|+..+++
T Consensus 92 ~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~-G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~-- 168 (314)
T d1pjxa_ 92 LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE-GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD-- 168 (314)
T ss_dssp TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTT-SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEE--
T ss_pred CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCC-CCEEEecCccCcccccccceeccCCceEEEEeecCceeEee--
Confidence 45888888876544321 2557999999975 79999986321 235799999999766543
Q ss_pred CCCCCcceEEEcCCCC----cEEEEccCCCCeEEEEecCCCCc----EEEEe---CCCCCCeeEEEeCCCCeEEEEcCCC
Q psy6570 69 TGLNEPYDIALEPLSG----RMFWTELGIKPRISGASIDGKNK----FNLVD---NNIQWPTGITIDYPSQRLYWADPKA 137 (713)
Q Consensus 69 ~~~~~p~~iavD~~~~----~ly~td~~~~~~I~~~~~dG~~~----~~l~~---~~~~~p~glavd~~~~~LY~~d~~~ 137 (713)
..+..|+||++++... .||++|+... +|+++++++... +++.. .....|.||++| .+++||+++...
T Consensus 169 ~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~-~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD-~~GnlyVa~~~~ 246 (314)
T d1pjxa_ 169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTK-KLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD-EDNNLLVANWGS 246 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEETTTT-EEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB-TTCCEEEEEETT
T ss_pred CCcceeeeeEECCCCCcceeEEEEEeeccc-ceEEeeccCccccceeeEEEEccccccccceeeEEe-cCCcEEEEEcCC
Confidence 3578899999987543 6999998877 999988764432 22222 124469999999 568999999999
Q ss_pred CcEEEEeCCCCceeEEEecCCCCccceeeeee--CCeEEEEeCCCCcEEEEccc
Q psy6570 138 RTIESINLNGKDRFVVYHTEDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 138 ~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~ 189 (713)
++|++++.++......+.. ....|.++++. .+.||+|+..+++|++++..
T Consensus 247 g~I~~~dp~~g~~~~~i~~--p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 247 SHIEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp TEEEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CEEEEEeCCCCEEEEEEEC--CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 9999999997665443332 13567777775 34699999999999999854
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.43 E-value=4e-12 Score=129.38 Aligned_cols=156 Identities=16% Similarity=0.210 Sum_probs=122.4
Q ss_pred CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCC---CCeEEEEec
Q psy6570 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGI---KPRISGASI 102 (713)
Q Consensus 26 ~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~---~~~I~~~~~ 102 (713)
...+|+++|.. ++|||+|. ..++|++++++|+....++......|.+|++++ +|.||+++.+. ...|.+.+.
T Consensus 40 ~~lEG~~~D~~-G~Ly~~D~---~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~ 114 (319)
T d2dg1a1 40 LQLEGLNFDRQ-GQLFLLDV---FEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATE 114 (319)
T ss_dssp CCEEEEEECTT-SCEEEEET---TTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECT
T ss_pred cCcEeCEECCC-CCEEEEEC---CCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcC
Confidence 34589999965 67999999 789999999999876655555567899999996 68999987542 336888888
Q ss_pred CCCCcEEEEe--CCCCCCeeEEEeCCCCeEEEEcCCC------CcEEEEeCCCCceeEEEecCCCCccceeeeee--CCe
Q psy6570 103 DGKNKFNLVD--NNIQWPTGITIDYPSQRLYWADPKA------RTIESINLNGKDRFVVYHTEDNGYKPYKLEVF--EDN 172 (713)
Q Consensus 103 dG~~~~~l~~--~~~~~p~glavd~~~~~LY~~d~~~------~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~--~~~ 172 (713)
++.....++. .....|+++++|+ .++|||+|... +.|++++.+|...+.+... +..|.||+++ ++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~---~~~pnGia~s~dg~~ 190 (319)
T d2dg1a1 115 NGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN---ISVANGIALSTDEKV 190 (319)
T ss_dssp TSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE---ESSEEEEEECTTSSE
T ss_pred CCceeeeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccceeEEEeec---cceeeeeeeccccce
Confidence 8877766664 2466799999995 56899998643 4599999999877766654 5578788875 567
Q ss_pred EEEEeCCCCcEEEEcccC
Q psy6570 173 LYFSTYRTNNILKINKFG 190 (713)
Q Consensus 173 ly~td~~~~~i~~~~~~~ 190 (713)
||++|...++|++++...
T Consensus 191 lyvad~~~~~I~~~d~~~ 208 (319)
T d2dg1a1 191 LWVTETTANRLHRIALED 208 (319)
T ss_dssp EEEEEGGGTEEEEEEECT
T ss_pred EEEecccCCceEEEEEcC
Confidence 999999999999997643
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.29 E-value=9.3e-11 Score=118.10 Aligned_cols=160 Identities=16% Similarity=0.068 Sum_probs=122.8
Q ss_pred CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecC
Q psy6570 24 NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASID 103 (713)
Q Consensus 24 ~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~d 103 (713)
.-..|++||+++. ++||+++. ..++|++++.+|+.... .. ....|.+|++++ +|.||++++..+ .|.++.++
T Consensus 26 ~~~~~e~iAv~pd-G~l~vt~~---~~~~I~~i~p~g~~~~~-~~-~~~~~~gla~~~-dG~l~v~~~~~~-~~~~~~~~ 97 (302)
T d2p4oa1 26 VNTFLENLASAPD-GTIFVTNH---EVGEIVSITPDGNQQIH-AT-VEGKVSGLAFTS-NGDLVATGWNAD-SIPVVSLV 97 (302)
T ss_dssp TTCCEEEEEECTT-SCEEEEET---TTTEEEEECTTCCEEEE-EE-CSSEEEEEEECT-TSCEEEEEECTT-SCEEEEEE
T ss_pred CCCCcCCEEECCC-CCEEEEeC---CCCEEEEEeCCCCEEEE-Ec-CCCCcceEEEcC-CCCeEEEecCCc-eEEEEEec
Confidence 3346889999975 78999999 78999999999975543 32 237899999997 678999988766 67776665
Q ss_pred CCCc--EEEE-eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecC--------CCCccceeeeeeCCe
Q psy6570 104 GKNK--FNLV-DNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTE--------DNGYKPYKLEVFEDN 172 (713)
Q Consensus 104 G~~~--~~l~-~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~--------~~~~~p~~i~~~~~~ 172 (713)
+... ..+. ......|++|++++ .+++|+++....+|++++.++....++.... .....+.+|+.++++
T Consensus 98 ~~~~~~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~ 176 (302)
T d2p4oa1 98 KSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNF 176 (302)
T ss_dssp CTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTE
T ss_pred ccccceeeccccCCccccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCc
Confidence 4332 2222 34567899999995 6799999999999999999887665554332 123456788889999
Q ss_pred EEEEeCCCCcEEEEcccCCC
Q psy6570 173 LYFSTYRTNNILKINKFGNS 192 (713)
Q Consensus 173 ly~td~~~~~i~~~~~~~~~ 192 (713)
||+++...++|++++.....
T Consensus 177 l~~~~~~~~~i~~~~~~~~~ 196 (302)
T d2p4oa1 177 LYVSNTEKMLLLRIPVDSTD 196 (302)
T ss_dssp EEEEETTTTEEEEEEBCTTS
T ss_pred eeeecCCCCeEEeccccccc
Confidence 99999999999999876543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.98 E-value=1.1e-08 Score=101.97 Aligned_cols=164 Identities=11% Similarity=0.149 Sum_probs=116.1
Q ss_pred CceeEEEccCcc-cEEec-----CCCCCceEEEeccCCeEEEeecCCC---CCCeEEEEecCCceEEEEEcCCCCCcceE
Q psy6570 7 GNVTRVKREMNL-KTVLS-----NLHDPRGVAVDWVGKNLYWTDAGGR---SSNNIMVSTLEGRKKRTLLNTGLNEPYDI 77 (713)
Q Consensus 7 ~~I~~~~~~~~~-~~~~~-----~~~~p~gla~D~~~~~ly~td~~~~---~~~~I~~~~~~G~~~~~l~~~~~~~p~~i 77 (713)
+.|.++++.+.+ +.+.. ....|..+++|+. ++||+++.... ....+++.. +|+..+ +. .++..|+++
T Consensus 78 ~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~-G~iw~~~~~~~~~~~~g~l~~~~-~g~~~~-~~-~~~~~~Ng~ 153 (295)
T d2ghsa1 78 DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS-GALWIGTMGRKAETGAGSIYHVA-KGKVTK-LF-ADISIPNSI 153 (295)
T ss_dssp TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT-SCEEEEEEETTCCTTCEEEEEEE-TTEEEE-EE-EEESSEEEE
T ss_pred CccEEeecccceeeEEeeeecCCCcccceeeEECCC-CCEEEEeccccccccceeEeeec-CCcEEE-Ee-eccCCccee
Confidence 457888877654 33321 2335789999976 67888875321 123455554 454433 33 457889999
Q ss_pred EEcCCCCcEEEEccCCCCeEEEEecCCCC------cEEEEe--CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCc
Q psy6570 78 ALEPLSGRMFWTELGIKPRISGASIDGKN------KFNLVD--NNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKD 149 (713)
Q Consensus 78 avD~~~~~ly~td~~~~~~I~~~~~dG~~------~~~l~~--~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~ 149 (713)
++++..+.|||+|+..+ +|+++++|... +..++. .....|.||++| .+++||++.+..++|.+++.+|..
T Consensus 154 ~~s~d~~~l~~~dt~~~-~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD-~~GnlWva~~~~g~V~~~dp~G~~ 231 (295)
T d2ghsa1 154 CFSPDGTTGYFVDTKVN-RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDTDGNH 231 (295)
T ss_dssp EECTTSCEEEEEETTTC-EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC-TTSCEEEEEETTTEEEEECTTCCE
T ss_pred eecCCCceEEEeecccc-eeeEeeecccccccccceEEEeccCcccccccceEEc-CCCCEEeeeeCCCceEEecCCCcE
Confidence 99999999999999888 99999987532 233332 234579999999 577999999999999999999987
Q ss_pred eeEEEecCCCCccceeeeee---CCeEEEEeCC
Q psy6570 150 RFVVYHTEDNGYKPYKLEVF---EDNLYFSTYR 179 (713)
Q Consensus 150 ~~~~~~~~~~~~~p~~i~~~---~~~ly~td~~ 179 (713)
...+... ..+|..+++- .+.||+|...
T Consensus 232 ~~~i~lP---~~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 232 IARYEVP---GKQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp EEEEECS---CSBEEEEEEESTTSCEEEEEEBC
T ss_pred eeEecCC---CCceEEEEEeCCCCCEEEEEECC
Confidence 7666543 3478888874 3679998653
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=98.91 E-value=9.1e-08 Score=94.46 Aligned_cols=179 Identities=18% Similarity=0.268 Sum_probs=127.6
Q ss_pred CCcccCCceeEEEccCcccE-EecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEE
Q psy6570 1 MASISSGNVTRVKREMNLKT-VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIAL 79 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~~~~-~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iav 79 (713)
|++..++.|..+|+.+.+.+ .+..-..|.+|++++.+++||+++. ..++|.+.++........+.. ...|.++++
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~---~~~~i~v~d~~t~~~~~~~~~-~~~~~~~~~ 81 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANA---HSNDVSIIDTATNNVIATVPA-GSSPQGVAV 81 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEG---GGTEEEEEETTTTEEEEEEEC-SSSEEEEEE
T ss_pred EEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEEC---CCCEEEEEECCCCceeeeeec-ccccccccc
Confidence 46678899999998875422 2444578999999999899999998 788999999976554433333 367999999
Q ss_pred cCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCC
Q psy6570 80 EPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDN 159 (713)
Q Consensus 80 D~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 159 (713)
++....+|++..... .+...++........+. ....|..+++++.+.+++++......+...+............
T Consensus 82 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 156 (301)
T d1l0qa2 82 SPDGKQVYVTNMASS-TLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV--- 156 (301)
T ss_dssp CTTSSEEEEEETTTT-EEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---
T ss_pred ccccccccccccccc-eeeecccccceeeeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc---
Confidence 988888888887665 77777776554444433 4457889999999999999988777788777765544433333
Q ss_pred Cccceeeeee--CCeEEEEeCCCCcEEEEcc
Q psy6570 160 GYKPYKLEVF--EDNLYFSTYRTNNILKINK 188 (713)
Q Consensus 160 ~~~p~~i~~~--~~~ly~td~~~~~i~~~~~ 188 (713)
...|..+++. +..+|++......+.....
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (301)
T d1l0qa2 157 GRSPKGIAVTPDGTKVYVANFDSMSISVIDT 187 (301)
T ss_dssp CSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred CCCceEEEeeccccceeeecccccccccccc
Confidence 3345555544 5678888766665555543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.87 E-value=4.8e-08 Score=100.51 Aligned_cols=162 Identities=11% Similarity=0.101 Sum_probs=110.4
Q ss_pred CCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEE----EE-cCCCCCcceEEEcCCCCcEEEEccCCCCeEEE
Q psy6570 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRT----LL-NTGLNEPYDIALEPLSGRMFWTELGIKPRISG 99 (713)
Q Consensus 25 ~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~----l~-~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~ 99 (713)
...|+++++++.++.||++|. ..++|.+++.+...... +. ......|+.|+++|..++||++....+ .|.+
T Consensus 144 ~~h~h~v~~sPdG~~l~v~d~---g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~-~V~v 219 (365)
T d1jofa_ 144 NTGIHGMVFDPTETYLYSADL---TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN-RICE 219 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT-EEEE
T ss_pred CCcceEEEECCCCCEEEEeeC---CCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCC-EEEE
Confidence 346789999999999999998 67888887655332211 11 122468999999999889999997777 8999
Q ss_pred EecCCCCcEEEEe-------------------CCCCCCeeEEEeCCCCeEEEEcCCCC-----cEEEEeCC--CCcee--
Q psy6570 100 ASIDGKNKFNLVD-------------------NNIQWPTGITIDYPSQRLYWADPKAR-----TIESINLN--GKDRF-- 151 (713)
Q Consensus 100 ~~~dG~~~~~l~~-------------------~~~~~p~glavd~~~~~LY~~d~~~~-----~I~~~~~~--g~~~~-- 151 (713)
++++......+.. .....+..|+|++++++||++....+ .|..+.++ |...+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~ 299 (365)
T d1jofa_ 220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL 299 (365)
T ss_dssp EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE
T ss_pred EEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEe
Confidence 9888754432221 00124678999999999999964333 36555543 43222
Q ss_pred EEEecCCCCccceeeeee---CCeEEEEeCCCCcEEEEcccC
Q psy6570 152 VVYHTEDNGYKPYKLEVF---EDNLYFSTYRTNNILKINKFG 190 (713)
Q Consensus 152 ~~~~~~~~~~~p~~i~~~---~~~ly~td~~~~~i~~~~~~~ 190 (713)
.+........+|.+|++. +.+||+++...+.|..++..+
T Consensus 300 ~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 300 FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred EeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence 222222235678888874 567999999999888776543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.70 E-value=5e-07 Score=92.68 Aligned_cols=183 Identities=13% Similarity=0.026 Sum_probs=119.4
Q ss_pred CCceeEEEccCcccEE-------ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEE
Q psy6570 6 SGNVTRVKREMNLKTV-------LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIA 78 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~-------~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia 78 (713)
.+.|+.+..+.+...+ +.....|..|++++.++.||.++. ..-..+.++.++.............|..++
T Consensus 13 ~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~ 89 (365)
T d1jofa_ 13 PGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM---KKWSSFAVKSPTEIVHEASHPIGGHPRAND 89 (365)
T ss_dssp SCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB---TEEEEEEEEETTEEEEEEEEECCSSGGGGC
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC---CcEEEEEEeCCCCeEEEeeecCCCCcEEEE
Confidence 4568888777643221 234555788999999999999987 444556666666655444333346799999
Q ss_pred EcCCCCcEEEEccC-CCCeEEEEecCC--C------------CcEEEE---eCCCCCCeeEEEeCCCCeEEEEcCCCCcE
Q psy6570 79 LEPLSGRMFWTELG-IKPRISGASIDG--K------------NKFNLV---DNNIQWPTGITIDYPSQRLYWADPKARTI 140 (713)
Q Consensus 79 vD~~~~~ly~td~~-~~~~I~~~~~dG--~------------~~~~l~---~~~~~~p~glavd~~~~~LY~~d~~~~~I 140 (713)
+++.++.+|++... ....|....+.. . ...... ......|.+++++|++++||++|.+.++|
T Consensus 90 ~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v 169 (365)
T d1jofa_ 90 ADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKL 169 (365)
T ss_dssp TTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred ECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEE
Confidence 99988888886543 122555443321 1 111111 11234678999999999999999999999
Q ss_pred EEEeCCCCceeEEEe---cCCCCccceeeeee--CCeEEEEeCCCCcEEEEcccCC
Q psy6570 141 ESINLNGKDRFVVYH---TEDNGYKPYKLEVF--EDNLYFSTYRTNNILKINKFGN 191 (713)
Q Consensus 141 ~~~~~~g~~~~~~~~---~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~~~~ 191 (713)
++++.+......... .......|..+++. +.++|++....+.|..++....
T Consensus 170 ~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 170 WTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp EEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence 988765443222211 11124578888876 5579999999999888776544
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.68 E-value=6.1e-07 Score=89.81 Aligned_cols=183 Identities=11% Similarity=0.052 Sum_probs=123.6
Q ss_pred CCcccCCceeEEEccCc--ccEE--ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCc--eEEEEEc-CCCCC
Q psy6570 1 MASISSGNVTRVKREMN--LKTV--LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGR--KKRTLLN-TGLNE 73 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~--~~~~--~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~--~~~~l~~-~~~~~ 73 (713)
||+..+++|+.++++.. .+++ +.....|.+|+|.+.++.||++.. ..+.|.+++++.. ..+.+.. .....
T Consensus 8 v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~---~d~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (333)
T d1ri6a_ 8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESALPGS 84 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred EECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence 35567888988887643 2222 345578999999999999999987 6788887776543 2233222 22367
Q ss_pred cceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEE--eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCcee
Q psy6570 74 PYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLV--DNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRF 151 (713)
Q Consensus 74 p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~--~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~ 151 (713)
|.+|+++|.+++||+++.... .|.....+........ ......|.++++++...++|+++.....|..++.......
T Consensus 85 p~~l~~spDg~~l~v~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (333)
T d1ri6a_ 85 LTHISTDHQGQFVFVGSYNAG-NVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 163 (333)
T ss_dssp CSEEEECTTSSEEEEEETTTT-EEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred ceEEEEcCCCCEEeecccCCC-ceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcc
Confidence 999999999889999987655 6776666654433332 3456678999999999999999988888888776554322
Q ss_pred EEE----ecCCCCccceeeeee--CCeEEEEeCCCCcEEEEc
Q psy6570 152 VVY----HTEDNGYKPYKLEVF--EDNLYFSTYRTNNILKIN 187 (713)
Q Consensus 152 ~~~----~~~~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~ 187 (713)
... ........|..+++. +..+|++....+.+....
T Consensus 164 ~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~ 205 (333)
T d1ri6a_ 164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE 205 (333)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEe
Confidence 211 111124456666664 557788776666544433
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=98.64 E-value=2.2e-06 Score=84.14 Aligned_cols=201 Identities=20% Similarity=0.211 Sum_probs=135.5
Q ss_pred CcccCCceeEEEccCcccE-EecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEc
Q psy6570 2 ASISSGNVTRVKREMNLKT-VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALE 80 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~~~-~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD 80 (713)
++..+++|..+++.+...+ .+.....|.++++++.+..+|++.. ....+.+.++........+.. ...|..++++
T Consensus 49 ~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 124 (301)
T d1l0qa2 49 ANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKT-GKSPLGLALS 124 (301)
T ss_dssp EEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEEC-SSSEEEEEEC
T ss_pred EECCCCEEEEEECCCCceeeeeecccccccccccccccccccccc---ccceeeecccccceeeeeccc-cccceEEEee
Confidence 3455678888888765432 2556678999999999888998887 677888888876554444433 3678999999
Q ss_pred CCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCC
Q psy6570 81 PLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNG 160 (713)
Q Consensus 81 ~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 160 (713)
+..+.++++..... .+...+.........+. ....|..+++++..++||++......+................ .
T Consensus 125 ~dg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 199 (301)
T d1l0qa2 125 PDGKKLYVTNNGDK-TVSVINTVTKAVINTVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---E 199 (301)
T ss_dssp TTSSEEEEEETTTT-EEEEEETTTTEEEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---S
T ss_pred cCCCeeeeeecccc-ceeeeeccccceeeecc-cCCCceEEEeeccccceeeecccccccccccccceeeeecccc---c
Confidence 88888888876555 66666655444333333 4567899999999999999998888777777766554444333 2
Q ss_pred ccceeeeee--CCeEEEEeC--CCCcEEEEcccCCCcceeeeccccccccEEEEee
Q psy6570 161 YKPYKLEVF--EDNLYFSTY--RTNNILKINKFGNSDFNVLANNLNRASDVLILQE 212 (713)
Q Consensus 161 ~~p~~i~~~--~~~ly~td~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~ 212 (713)
..|.++++. +..+|++.. ..+.|+.++...+.....+.. ...|.++++...
T Consensus 200 ~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~va~spd 254 (301)
T d1l0qa2 200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTPD 254 (301)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEEEEECTT
T ss_pred CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC-CCCEEEEEEeCC
Confidence 356665554 667777653 346788887665544443332 244556655443
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.58 E-value=7.2e-07 Score=89.94 Aligned_cols=169 Identities=15% Similarity=0.119 Sum_probs=108.5
Q ss_pred CCceeEEEccCccc-E--E-ec-C-----CCCCceEEEecc---CCeEEEeecCCCCCCeEEEEec--CCceE---EEEE
Q psy6570 6 SGNVTRVKREMNLK-T--V-LS-N-----LHDPRGVAVDWV---GKNLYWTDAGGRSSNNIMVSTL--EGRKK---RTLL 67 (713)
Q Consensus 6 ~~~I~~~~~~~~~~-~--~-~~-~-----~~~p~gla~D~~---~~~ly~td~~~~~~~~I~~~~~--~G~~~---~~l~ 67 (713)
.|+|+.+++..... . + +. . .-.|+||.+-.. ...||+.+... ...+|.++.+ ++... ..+.
T Consensus 67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~-~~~~ieif~~~~~~~~l~~~~~v~ 145 (340)
T d1v04a_ 67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPG-SSSTVEVFKFQEEEKSLLHLKTIR 145 (340)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECST-TCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccC-CCceeEEEEEeCCCCeEEEEeecC
Confidence 58899999876431 1 1 22 1 146999987322 22688887621 2455655554 44332 2233
Q ss_pred cCCCCCcceEEEcCCCCcEEEEccCC--------------CCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEE
Q psy6570 68 NTGLNEPYDIALEPLSGRMFWTELGI--------------KPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWA 133 (713)
Q Consensus 68 ~~~~~~p~~iavD~~~~~ly~td~~~--------------~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~ 133 (713)
...+..|++|++.. .+.+|+|+... .+...+...+++..++++ .++..|+||+++++++.|||+
T Consensus 146 ~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~-~~l~~pNGI~~s~d~~~lyVa 223 (340)
T d1v04a_ 146 HKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVA-EGFDFANGINISPDGKYVYIA 223 (340)
T ss_dssp CTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEE-EEESSEEEEEECTTSSEEEEE
T ss_pred CccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEc-CCCCccceeEECCCCCEEEEE
Confidence 34578899999995 77899996321 123455566776665554 478899999999999999999
Q ss_pred cCCCCcEEEEeCCCCceeEEEecCCCCccceeeeee--CCeEEEEe
Q psy6570 134 DPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF--EDNLYFST 177 (713)
Q Consensus 134 d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~--~~~ly~td 177 (713)
++...+|+++++++...............|..|.++ ++.+|++.
T Consensus 224 ~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 224 ELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred eCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 999999999998875432222211124568888886 34555553
|
| >d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=2.6e-08 Score=64.12 Aligned_cols=37 Identities=38% Similarity=0.906 Sum_probs=31.0
Q ss_pred CCCCCCCCCCCCcEEeecCCCceeeCCCCCcCCCCCc
Q psy6570 552 ANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTE 588 (713)
Q Consensus 552 ~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~ 588 (713)
+++|.++||.++|+|++..++|+|.|++||+|+.|+.
T Consensus 1 Id~C~~~PC~n~g~C~~~~~~y~C~C~~G~~G~~Ce~ 37 (39)
T d2vj3a2 1 VNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEV 37 (39)
T ss_dssp CCTTTTCCCCSSCEEEECSSCEEEECCTTEESSSSCE
T ss_pred CcCCcCCCCCCCCEEECCCCCEEEeCCCCCccCcCee
Confidence 4678888888888888888888888888888888864
|
| >d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=3.5e-08 Score=63.69 Aligned_cols=36 Identities=31% Similarity=0.688 Sum_probs=32.3
Q ss_pred CCCCCCCCCCCCcEEeecCCCceeeCCCCCcCCCCC
Q psy6570 552 ANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCT 587 (713)
Q Consensus 552 ~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~ 587 (713)
+++|.++||.++|+|++..++|+|.|++||+|+.|+
T Consensus 3 ~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~Ce 38 (39)
T d1edmb_ 3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38 (39)
T ss_dssp CCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred cccCCCCCCCCCcEEEcCCCCEEEECCCCCCCCCCC
Confidence 578999999999999999999999999999999885
|
| >d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.53 E-value=2.2e-08 Score=63.73 Aligned_cols=36 Identities=31% Similarity=0.852 Sum_probs=30.5
Q ss_pred CCCCCCCCCCCCcEEeecCCCceeeCCCCCcCCCCC
Q psy6570 552 ANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCT 587 (713)
Q Consensus 552 ~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~ 587 (713)
+++|.++||.++|+|++..++|+|.|++||+|+.|+
T Consensus 2 ~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~Ce 37 (37)
T d2c4fl1 2 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 37 (37)
T ss_dssp CCGGGGCCCCTTCEEEEETTEEEEECCTTEESTTSC
T ss_pred cccCCCCCCCCCCEEECCCCCeEEECCCCCcCCCCC
Confidence 578888888888888888888888888888888874
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=1.7e-06 Score=86.49 Aligned_cols=150 Identities=11% Similarity=0.075 Sum_probs=103.9
Q ss_pred CCeEEEeecCCCCCCeEEEEecCCce-EE--EEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCc-EEEE-
Q psy6570 37 GKNLYWTDAGGRSSNNIMVSTLEGRK-KR--TLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNK-FNLV- 111 (713)
Q Consensus 37 ~~~ly~td~~~~~~~~I~~~~~~G~~-~~--~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~-~~l~- 111 (713)
...+|++.. ..++|.+.+++... .+ ..+..+ ..|.+|++.|.+++||++..... .|.+.+++.... .++.
T Consensus 3 ~~~v~v~~~---~~~~I~v~~~~~~~~l~~~~~~~~~-~~v~~la~spDG~~L~v~~~~d~-~i~~~~i~~~~~~~~~~~ 77 (333)
T d1ri6a_ 3 KQTVYIASP---ESQQIHVWNLNHEGALTLTQVVDVP-GQVQPMVVSPDKRYLYVGVRPEF-RVLAYRIAPDDGALTFAA 77 (333)
T ss_dssp EEEEEEEEG---GGTEEEEEEECTTSCEEEEEEEECS-SCCCCEEECTTSSEEEEEETTTT-EEEEEEECTTTCCEEEEE
T ss_pred ceEEEEECC---CCCcEEEEEEcCCCCeEEEEEEcCC-CCEeEEEEeCCCCEEEEEECCCC-eEEEEEEeCCCCcEEEee
Confidence 357999998 78899998876432 12 223333 78999999998889999987655 787777764432 2222
Q ss_pred -eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeee--eCCeEEEEeCCCCcEEEEcc
Q psy6570 112 -DNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEV--FEDNLYFSTYRTNNILKINK 188 (713)
Q Consensus 112 -~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~--~~~~ly~td~~~~~i~~~~~ 188 (713)
......|.+|++++++++||+++.....|..++.+................|.++.+ ++.++|+++.....|..++.
T Consensus 78 ~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~ 157 (333)
T d1ri6a_ 78 ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTV 157 (333)
T ss_dssp EEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred ecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEe
Confidence 223457999999999999999998888888877766554444333222345555554 56788999888888877765
Q ss_pred cCC
Q psy6570 189 FGN 191 (713)
Q Consensus 189 ~~~ 191 (713)
...
T Consensus 158 ~~~ 160 (333)
T d1ri6a_ 158 SDD 160 (333)
T ss_dssp CTT
T ss_pred ccC
Confidence 443
|
| >d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=5.9e-08 Score=64.06 Aligned_cols=36 Identities=33% Similarity=0.953 Sum_probs=27.1
Q ss_pred CCCCC--CCCCCCCcEEeecCCCceeeCCCCCcCCCCC
Q psy6570 552 ANKCT--PNYCSNNGTCVLIEGKPSCKCLPPYSGKQCT 587 (713)
Q Consensus 552 ~~~C~--~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~ 587 (713)
+++|+ +++|.++|+|+++.++|+|.|++||+|+.|+
T Consensus 3 ideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~G~~Ce 40 (42)
T d2vj3a1 3 VDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCE 40 (42)
T ss_dssp CCTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTTSC
T ss_pred CccccCCCCCCCCCcEeECCCCCEEeECCCCCcCCCCc
Confidence 56665 4677777888888778888888888887775
|
| >d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=6.5e-08 Score=60.72 Aligned_cols=35 Identities=26% Similarity=0.772 Sum_probs=28.5
Q ss_pred CCCCCCCCCCCcEEeecCCCceeeCCCCCcCCCCC
Q psy6570 553 NKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCT 587 (713)
Q Consensus 553 ~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~ 587 (713)
|+|.++||.++|+|++..++|+|.|++||+|+.|+
T Consensus 1 d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~CE 35 (35)
T d2vj3a3 1 DECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 35 (35)
T ss_dssp CTTTTCCSTTTCEEEECSSCEEEECCTTEESSSSC
T ss_pred CCCCCCCCCCCcEEECCCCCeEEECCCCCCCCCcC
Confidence 46778888888888888888888888888888774
|
| >d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=7.5e-08 Score=61.94 Aligned_cols=36 Identities=33% Similarity=0.833 Sum_probs=29.0
Q ss_pred CCCCCCCCCCCcEEeecCCCceeeCCCCCcCCCCCc
Q psy6570 553 NKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTE 588 (713)
Q Consensus 553 ~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~ 588 (713)
|+|.++||.++|+|++..++|+|.|++||+|+.|+.
T Consensus 1 D~C~~~PC~ngg~C~~~~~~y~C~C~~G~~G~~Cei 36 (39)
T d1xkba1 1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL 36 (39)
T ss_dssp CTTTTCCCCSSCEECCCSSSCCEECCTTEETTTTCE
T ss_pred CcCCCCCCCCCcEEECCCCCEEEECCCCCCcCcCeE
Confidence 467788888888888888888888888888888863
|
| >d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=6.6e-08 Score=62.22 Aligned_cols=36 Identities=28% Similarity=0.780 Sum_probs=32.3
Q ss_pred cCCCCCCCCCcEeccCCCCccccCCCCCcCCCCccC
Q psy6570 417 QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYS 452 (713)
Q Consensus 417 ~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~C~~~ 452 (713)
+|.+.||.++|+|++..++|+|.|++||+|..|+++
T Consensus 3 ~C~~~PC~n~g~C~~~~~~y~C~C~~G~~G~~Ce~d 38 (39)
T d2vj3a2 3 ECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVN 38 (39)
T ss_dssp TTTTCCCCSSCEEEECSSCEEEECCTTEESSSSCEE
T ss_pred CCcCCCCCCCCEEECCCCCEEEeCCCCCccCcCeeC
Confidence 578889999999999999999999999999999854
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.37 E-value=4.9e-06 Score=87.28 Aligned_cols=156 Identities=16% Similarity=0.217 Sum_probs=105.9
Q ss_pred cccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCC--C------CCcceEEEcC---CCCc
Q psy6570 17 NLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG--L------NEPYDIALEP---LSGR 85 (713)
Q Consensus 17 ~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~--~------~~p~~iavD~---~~~~ 85 (713)
..++++++|.+|.+|++.+. ++||+++. ..++|.+++.++...+.+.... . ..-.+||+|| .+++
T Consensus 18 ~~~~ia~~L~~P~~la~~pd-g~llVter---~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~ 93 (450)
T d1crua_ 18 DKKVILSNLNKPHALLWGPD-NQIWLTER---ATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPY 93 (450)
T ss_dssp CEEEEECCCSSEEEEEECTT-SCEEEEET---TTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCE
T ss_pred EEEEEECCCCCceEEEEeCC-CeEEEEEe---cCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCE
Confidence 45777899999999999975 78999996 5689999997776655544321 1 1224799997 4788
Q ss_pred EEEEccC-----------CCCeEEEEecCCCCc-----EEEEe----CCCCCCeeEEEeCCCCeEEEEcCC---------
Q psy6570 86 MFWTELG-----------IKPRISGASIDGKNK-----FNLVD----NNIQWPTGITIDYPSQRLYWADPK--------- 136 (713)
Q Consensus 86 ly~td~~-----------~~~~I~~~~~dG~~~-----~~l~~----~~~~~p~glavd~~~~~LY~~d~~--------- 136 (713)
||++-.. ....|.+...+.... +.++. ...+.-..|++++ +++||++-..
T Consensus 94 iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgp-DG~LYvs~Gd~~~~~~~~~ 172 (450)
T d1crua_ 94 IYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYL 172 (450)
T ss_dssp EEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGT
T ss_pred EEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcC-CCCEEEEecCCCccccccc
Confidence 9986320 111355555554432 22221 2235667899996 5689998421
Q ss_pred -----------------------CCcEEEEeCCCCce-----------eEEEecCCCCccceeeeee-CCeEEEEeCCC
Q psy6570 137 -----------------------ARTIESINLNGKDR-----------FVVYHTEDNGYKPYKLEVF-EDNLYFSTYRT 180 (713)
Q Consensus 137 -----------------------~~~I~~~~~~g~~~-----------~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~ 180 (713)
.++|.|++.+|+.. +++.. .+++|.+++++ .+.||++|.+.
T Consensus 173 ~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~---G~RNp~g~~~~p~g~l~~~e~G~ 248 (450)
T d1crua_ 173 FLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTL---GHRNPQGLAFTPNGKLLQSEQGP 248 (450)
T ss_dssp TSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEB---CCSEEEEEEECTTSCEEEEEECS
T ss_pred ccccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEe---ccccccceeecccceeeeccccc
Confidence 36899999998642 23333 48899999998 67899998653
|
| >d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=9.8e-08 Score=61.38 Aligned_cols=36 Identities=36% Similarity=0.757 Sum_probs=32.6
Q ss_pred cCCCCCCCCCcEeccCCCCccccCCCCCcCCCCccC
Q psy6570 417 QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQYS 452 (713)
Q Consensus 417 ~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~C~~~ 452 (713)
+|.+.||.++|+|++..++|.|.|++||+|+.|+++
T Consensus 2 ~C~~~PC~ngg~C~~~~~~y~C~C~~G~~G~~Cei~ 37 (39)
T d1xkba1 2 QCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF 37 (39)
T ss_dssp TTTTCCCCSSCEECCCSSSCCEECCTTEETTTTCEE
T ss_pred cCCCCCCCCCcEEECCCCCEEEECCCCCCcCcCeEc
Confidence 578899999999999999999999999999999853
|
| >d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=2.2e-07 Score=61.23 Aligned_cols=37 Identities=35% Similarity=0.865 Sum_probs=32.5
Q ss_pred CCCCC---CCCCCCCCeEecCCCCcceeecCCCcccCCCCc
Q psy6570 591 DSPSC---HNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSE 628 (713)
Q Consensus 591 ~~~~C---~~~C~~~g~C~~~~~g~~~C~C~~G~~G~~C~~ 628 (713)
++++| +++|.++|+|++.. ++|+|.|++||+|..|+.
T Consensus 2 DideC~~~~~pC~n~g~C~n~~-g~y~C~C~~G~~G~~Ce~ 41 (42)
T d2vj3a1 2 DVDECSLGANPCEHAGKCINTL-GSFECQCLQGYTGPRCEI 41 (42)
T ss_dssp CCCTTTSSSCSSSTTCEEEECS-SSEEEECCTTEESTTSCE
T ss_pred CCccccCCCCCCCCCcEeECCC-CCEEeECCCCCcCCCCcC
Confidence 45778 47899999999987 899999999999999974
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.32 E-value=1.4e-05 Score=83.63 Aligned_cols=188 Identities=7% Similarity=-0.061 Sum_probs=124.9
Q ss_pred cccCCceeEEEccCcccE-EecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEc-CCCCCcceEEEc
Q psy6570 3 SISSGNVTRVKREMNLKT-VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLN-TGLNEPYDIALE 80 (713)
Q Consensus 3 d~~~~~I~~~~~~~~~~~-~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~-~~~~~p~~iavD 80 (713)
...+++|..+|+.+.+.+ .+..-..|.+|+|.+.++.||++.. .+.|.+.+++......+.. .....|.++++.
T Consensus 38 ~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~----dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s 113 (432)
T d1qksa2 38 LRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGR----DGKVNMIDLWMKEPTTVAEIKIGSEARSIETS 113 (432)
T ss_dssp ETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET----TSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred EcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcC----CCCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence 345788889998875432 2444567999999999999998864 5789999987543222211 223578888876
Q ss_pred C----CCCcEEEEccCCCCeEEEEecCCCCcEEEEeC-----------CCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeC
Q psy6570 81 P----LSGRMFWTELGIKPRISGASIDGKNKFNLVDN-----------NIQWPTGITIDYPSQRLYWADPKARTIESINL 145 (713)
Q Consensus 81 ~----~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~-----------~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~ 145 (713)
+ ..++||++..... .|...+.+.......+.. ....+.+|++++.+.++||+....+.|..+++
T Consensus 114 ~~~SpDG~~l~vs~~~~~-~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~ 192 (432)
T d1qksa2 114 KMEGWEDKYAIAGAYWPP-QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192 (432)
T ss_dssp CSTTCTTTEEEEEEEETT-EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred cccCCCCCEEEEEcCCCC-eEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEc
Confidence 5 3557899887666 788888775554433321 12344578889888899999999999999998
Q ss_pred CCCceeEEEecCCCCccceeeee--eCCeEEEEeCCCCcEEEEcccCCCccee
Q psy6570 146 NGKDRFVVYHTEDNGYKPYKLEV--FEDNLYFSTYRTNNILKINKFGNSDFNV 196 (713)
Q Consensus 146 ~g~~~~~~~~~~~~~~~p~~i~~--~~~~ly~td~~~~~i~~~~~~~~~~~~~ 196 (713)
.......+..... ...|.++++ ++.++|++....+.|..++.........
T Consensus 193 ~~~~~~~~~~i~~-g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~ 244 (432)
T d1qksa2 193 TDLNNLKTTEISA-ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI 244 (432)
T ss_dssp TCSSEEEEEEEEC-CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred cCCCcceEEEEcc-cCccccceECCCCCEEEEeccccceEEEeecccceEEEE
Confidence 6543322222111 234555555 4667888888888888887665444433
|
| >d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.2e-07 Score=61.05 Aligned_cols=35 Identities=43% Similarity=0.924 Sum_probs=30.9
Q ss_pred cCCCCCCCCCcEeccCCCCccccCCCCCcCCCCcc
Q psy6570 417 QCLNLKCQNGGVCVNKTTGLECDCPKFYYGKNCQY 451 (713)
Q Consensus 417 ~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~C~~ 451 (713)
+|.++||.++|+|++..++|+|.|++||+|+.|++
T Consensus 5 ~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~Cei 39 (39)
T d1edmb_ 5 QCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39 (39)
T ss_dssp TTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSCC
T ss_pred cCCCCCCCCCcEEEcCCCCEEEECCCCCCCCCCCC
Confidence 67888999999999988899999999999998873
|
| >d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.28 E-value=2.1e-07 Score=59.12 Aligned_cols=35 Identities=26% Similarity=0.748 Sum_probs=31.6
Q ss_pred CCCC-CCCCCCCCeEecCCCCcceeecCCCcccCCCC
Q psy6570 592 SPSC-HNYCDNAGLCSYSKQGKPVCTCVNGWSGITCS 627 (713)
Q Consensus 592 ~~~C-~~~C~~~g~C~~~~~g~~~C~C~~G~~G~~C~ 627 (713)
.++| +++|.++|+|++.. ++|.|.|++||+|..|+
T Consensus 2 ~d~C~~~PC~ngg~C~~~~-~~y~C~C~~g~~G~~Ce 37 (37)
T d2c4fl1 2 GDQCASSPCQNGGSCKDQL-QSYICFCLPAFEGRNCE 37 (37)
T ss_dssp CCGGGGCCCCTTCEEEEET-TEEEEECCTTEESTTSC
T ss_pred cccCCCCCCCCCCEEECCC-CCeEEECCCCCcCCCCC
Confidence 4788 78999999999876 89999999999999985
|
| >d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=2.5e-07 Score=58.02 Aligned_cols=35 Identities=31% Similarity=1.008 Sum_probs=32.2
Q ss_pred CCCCCCCCCCCcEEcCCCCCeeccCCCCCCCCCCc
Q psy6570 506 KKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCE 540 (713)
Q Consensus 506 ~~C~~~~C~~~g~C~~~~~~~~C~C~~g~~G~~C~ 540 (713)
+.|.+.||.++|+|++..++|+|.|++||+|.+||
T Consensus 1 d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~CE 35 (35)
T d2vj3a3 1 DECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 35 (35)
T ss_dssp CTTTTCCSTTTCEEEECSSCEEEECCTTEESSSSC
T ss_pred CCCCCCCCCCCcEEECCCCCeEEECCCCCCCCCcC
Confidence 46788899999999999999999999999999986
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.23 E-value=2.9e-05 Score=77.79 Aligned_cols=158 Identities=13% Similarity=0.053 Sum_probs=98.9
Q ss_pred ecCCCCCceEEEeccCCeEEEeecCCC------------CCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEE
Q psy6570 22 LSNLHDPRGVAVDWVGKNLYWTDAGGR------------SSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWT 89 (713)
Q Consensus 22 ~~~~~~p~gla~D~~~~~ly~td~~~~------------~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~t 89 (713)
...+..|..|++.. .+.+|+|+.... ......+...+++..+++. .++..|+||++++.++.||++
T Consensus 146 ~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~-~~l~~pNGI~~s~d~~~lyVa 223 (340)
T d1v04a_ 146 HKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVA-EGFDFANGINISPDGKYVYIA 223 (340)
T ss_dssp CTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEE-EEESSEEEEEECTTSSEEEEE
T ss_pred CccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEc-CCCCccceeEECCCCCEEEEE
Confidence 34577799999985 578999964211 1223344455566665554 567899999999988999999
Q ss_pred ccCCCCeEEEEecCCCCcEEEE--eCCCCCCeeEEEeCCCCeEEEEcC--------------CCCcEEEEeC-CC--Cce
Q psy6570 90 ELGIKPRISGASIDGKNKFNLV--DNNIQWPTGITIDYPSQRLYWADP--------------KARTIESINL-NG--KDR 150 (713)
Q Consensus 90 d~~~~~~I~~~~~dG~~~~~l~--~~~~~~p~glavd~~~~~LY~~d~--------------~~~~I~~~~~-~g--~~~ 150 (713)
++... +|++..+++....+.. ..--..|..|.+|+.++.|+++-. ....++++.. ++ ...
T Consensus 224 ~t~~~-~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~p~~~~~~~~~~~~~~~s~v~ri~~~~~~~~~v 302 (340)
T d1v04a_ 224 ELLAH-KIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKV 302 (340)
T ss_dssp EGGGT-EEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEE
T ss_pred eCCCC-eEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEECCcccchhhhcccCCCCceeEEEEeccCCCCeE
Confidence 98877 9999999876543332 122346899999987888888731 1112455432 22 222
Q ss_pred eEEEe-cCCCCccceeeeeeCCeEEEEeCCCCc
Q psy6570 151 FVVYH-TEDNGYKPYKLEVFEDNLYFSTYRTNN 182 (713)
Q Consensus 151 ~~~~~-~~~~~~~p~~i~~~~~~ly~td~~~~~ 182 (713)
+.+.. ....+.........+++||+.......
T Consensus 303 ~~~~~~~G~~~~~~T~a~~~~g~L~iGs~~~~~ 335 (340)
T d1v04a_ 303 TVVYAENGTVLQGSTVAAVYKGKLLIGTVFHKA 335 (340)
T ss_dssp EEEEEECSSSSCSEEEEEEETTEEEEEESSSCE
T ss_pred EEEEeCCCcEeeceEEEEEECCEEEEEeeeCCc
Confidence 33332 222233333344567888887655443
|
| >d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: E-selectin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=1.8e-07 Score=60.59 Aligned_cols=37 Identities=30% Similarity=0.792 Sum_probs=31.0
Q ss_pred CCCCCCCCCCCcEEeecCCCceeeCCCCCcCCCCCcC
Q psy6570 553 NKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTER 589 (713)
Q Consensus 553 ~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~ 589 (713)
+.|.++||.++|+|+...++|+|.|++||+|+.|+..
T Consensus 2 ~~C~~~pC~ngg~C~~~~~~y~C~C~~g~~G~~Ce~~ 38 (40)
T d1g1sa2 2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYV 38 (40)
T ss_dssp CCCCTTGGGGSEEEEECSSSEEEEECTTEESTTSCEE
T ss_pred CcccCCcCCCCcEEECCCCCeEEeCCCCccCCCCCCC
Confidence 3577888888889988888889999999999888764
|
| >d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: E-selectin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=1.6e-07 Score=60.51 Aligned_cols=36 Identities=39% Similarity=0.886 Sum_probs=30.9
Q ss_pred CCCCCCCCCCCcEEeecCCCceeeCCCCCcCCCCCc
Q psy6570 553 NKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTE 588 (713)
Q Consensus 553 ~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~ 588 (713)
+.|.++||.++|+|++..++|+|.|++||+|+.|+.
T Consensus 2 ~~C~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~ 37 (39)
T d1g1ta2 2 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 37 (39)
T ss_dssp CCCCTTGGGGSEEEEEETTEEEEEECTTEESTTSCE
T ss_pred CcccCCcCCCCcEEECCCCCEEEeCCCCCcCcCcCc
Confidence 367888898899999888889999999999998875
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.14 E-value=8.3e-05 Score=77.18 Aligned_cols=190 Identities=8% Similarity=-0.048 Sum_probs=123.2
Q ss_pred CcccCCceeEEEccCcccE-EecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEc-CCCCCcceEEE
Q psy6570 2 ASISSGNVTRVKREMNLKT-VLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLN-TGLNEPYDIAL 79 (713)
Q Consensus 2 ad~~~~~I~~~~~~~~~~~-~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~-~~~~~p~~iav 79 (713)
+...+++|..+|+.+.+.+ .+.....|.+|+|.+.+++||++.. .+.|.+.+++......+.. .....|.++++
T Consensus 37 ~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~----d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~ 112 (426)
T d1hzua2 37 TLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGR----DARIDMIDLWAKEPTKVAEIKIGIEARSVES 112 (426)
T ss_dssp EETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEET----TSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred EEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeC----CCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence 3456789999998875422 2444567999999999999998865 5789999987654332221 22356888887
Q ss_pred cC----CCCcEEEEccCCCCeEEEEecCCCCcEEEEeC-----------CCCCCeeEEEeCCCCeEEEEcCCCCcEEEEe
Q psy6570 80 EP----LSGRMFWTELGIKPRISGASIDGKNKFNLVDN-----------NIQWPTGITIDYPSQRLYWADPKARTIESIN 144 (713)
Q Consensus 80 D~----~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~-----------~~~~p~glavd~~~~~LY~~d~~~~~I~~~~ 144 (713)
.+ ..++||++....+ .|...+........++.. ....+..++..+....++|+....++|..+.
T Consensus 113 s~~~spDG~~l~v~~~~~~-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~ 191 (426)
T d1hzua2 113 SKFKGYEDRYTIAGAYWPP-QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 191 (426)
T ss_dssp CCSTTCTTTEEEEEEEESS-EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred eeeecCCCCEEEEeecCCC-eEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 75 3567888876655 677666665544433321 1123456777878888899988888888877
Q ss_pred CCCCceeEEEecCCCCccceeeee--eCCeEEEEeCCCCcEEEEcccCCCcceee
Q psy6570 145 LNGKDRFVVYHTEDNGYKPYKLEV--FEDNLYFSTYRTNNILKINKFGNSDFNVL 197 (713)
Q Consensus 145 ~~g~~~~~~~~~~~~~~~p~~i~~--~~~~ly~td~~~~~i~~~~~~~~~~~~~~ 197 (713)
........+.... ....|.++++ ++.++|++....+.+..++...+......
T Consensus 192 ~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~ 245 (426)
T d1hzua2 192 YKDIDNLTVTSIG-AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV 245 (426)
T ss_dssp CSSSSSCEEEEEE-CCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred eccccceeeEEec-cCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEe
Confidence 6543322222111 1345666665 46678888888888888776655444433
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.06 E-value=4.2e-05 Score=78.67 Aligned_cols=183 Identities=13% Similarity=0.079 Sum_probs=114.1
Q ss_pred CCcccCCceeEEEccCcc--cEE-ecCCCCCceEEEeccCCeEEEeecCCCCCCe------------------EEEEecC
Q psy6570 1 MASISSGNVTRVKREMNL--KTV-LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNN------------------IMVSTLE 59 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~~--~~~-~~~~~~p~gla~D~~~~~ly~td~~~~~~~~------------------I~~~~~~ 59 (713)
|+|..+++|.++++++.+ +++ +.....|+|+++.+..+.+|++... ... +...+..
T Consensus 88 V~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~---~~~v~~~~dg~~~~~~~~~~~~~~iD~~ 164 (441)
T d1qnia2 88 INDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNA---EFVIPQPNDGTDFSLDNSYTMFTAIDAE 164 (441)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEE---CSCEESSCSSSCCCGGGEEEEEEEEETT
T ss_pred EEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEecc---CCcccccCcccccccccccceEEeecCc
Confidence 356678999999999754 222 4567889999999988999998762 222 2345554
Q ss_pred CceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCC-------------eEEEEe--------cCC--------------
Q psy6570 60 GRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKP-------------RISGAS--------IDG-------------- 104 (713)
Q Consensus 60 G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~-------------~I~~~~--------~dG-------------- 104 (713)
......-+..+ ..|.+++++|..+++|++..+.+. .|...+ .||
T Consensus 165 t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd 243 (441)
T d1qnia2 165 TMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVD 243 (441)
T ss_dssp TCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEE
T ss_pred cceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEE
Confidence 43322112122 469999999999999999755320 111110 011
Q ss_pred ----CCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC-------C--ceeEEEecCCCCccceeeeee-C
Q psy6570 105 ----KNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNG-------K--DRFVVYHTEDNGYKPYKLEVF-E 170 (713)
Q Consensus 105 ----~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g-------~--~~~~~~~~~~~~~~p~~i~~~-~ 170 (713)
......+ ..-+.|.|++++|++++||++....+.|..++++- . .+..+.........|+--+++ .
T Consensus 244 ~~~~~~v~~~I-PvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~ 322 (441)
T d1qnia2 244 GRGESEFTRYI-PVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGR 322 (441)
T ss_dssp CSSSCSSEEEE-CCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSS
T ss_pred cccCCceEEEE-eCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCC
Confidence 1111111 12457999999999999999999999999999532 1 112222221223345555666 4
Q ss_pred CeEEEEeCCCCcEEEEcc
Q psy6570 171 DNLYFSTYRTNNILKINK 188 (713)
Q Consensus 171 ~~ly~td~~~~~i~~~~~ 188 (713)
++.|-+-.....|.+.+.
T Consensus 323 g~~yts~~~ds~v~kw~~ 340 (441)
T d1qnia2 323 GNAYTTLFIDSQVCKWNI 340 (441)
T ss_dssp SEEEEEETTTTEEEEEEH
T ss_pred ceEEEcccccceEEEecc
Confidence 577777767777777764
|
| >d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=1.2e-06 Score=58.86 Aligned_cols=37 Identities=30% Similarity=0.754 Sum_probs=32.0
Q ss_pred CCCCCCCCCCCCcEEeecCCCceeeCCCCCcCCCCCcC
Q psy6570 552 ANKCTPNYCSNNGTCVLIEGKPSCKCLPPYSGKQCTER 589 (713)
Q Consensus 552 ~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~ 589 (713)
.++|.++||.+ |+|++..++|+|.|++||+|+.|+..
T Consensus 8 ~~~C~~~PC~n-G~C~~~~~~y~C~C~~G~~G~~Ce~~ 44 (48)
T d1autl1 8 EHPCASLCCGH-GTCIDGIGSFSCDCRSGWEGRFCQRE 44 (48)
T ss_dssp CCSSSSTTTTS-EEECCCSSCCCEEECTTEESTTSCEE
T ss_pred CCcccCCCCCC-CEEECCCCCCeEeCCCCCcCCCcccc
Confidence 57899999975 89999989999999999999999753
|
| >d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: E-selectin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=3.9e-07 Score=58.62 Aligned_cols=37 Identities=30% Similarity=0.843 Sum_probs=33.4
Q ss_pred CCCCCCCCCCCcEEcCCCCCeeccCCCCCCCCCCccc
Q psy6570 506 KKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECA 542 (713)
Q Consensus 506 ~~C~~~~C~~~g~C~~~~~~~~C~C~~g~~G~~C~~~ 542 (713)
+.|.+.||.++|+|++..+.|+|.|++||+|.+||..
T Consensus 2 ~~C~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~~ 38 (39)
T d1g1ta2 2 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQI 38 (39)
T ss_dssp CCCCTTGGGGSEEEEEETTEEEEEECTTEESTTSCEE
T ss_pred CcccCCcCCCCcEEECCCCCEEEeCCCCCcCcCcCcc
Confidence 3578889999999999999999999999999999854
|
| >d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=8.2e-07 Score=58.53 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=30.3
Q ss_pred CccCCCCCCCCCCCCeeeccCCCceeeeCCCCcc
Q psy6570 218 NVTNHCDDKPCHQSALCINLPSSHTCLCPDHLTE 251 (713)
Q Consensus 218 ~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~~ 251 (713)
..+|||+..++..+++|+|++|+|+|.|++||++
T Consensus 3 vDidEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy~~ 36 (43)
T d1emoa1 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYIL 36 (43)
T ss_dssp CCCCSSSSTTSCSSSCCCCCSSCCCCCCCTTEEE
T ss_pred cceeccCCcCCCCCCEeECCCCCeEeECCCCccc
Confidence 4689999877777899999999999999999985
|
| >d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: E-selectin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=7.5e-07 Score=57.63 Aligned_cols=37 Identities=27% Similarity=0.771 Sum_probs=33.4
Q ss_pred CCCCCCCCCCCcEEcCCCCCeeccCCCCCCCCCCccc
Q psy6570 506 KKCDTCTCLNGGTCIPNSKNNVCKCPSQYTGRRCECA 542 (713)
Q Consensus 506 ~~C~~~~C~~~g~C~~~~~~~~C~C~~g~~G~~C~~~ 542 (713)
+.|.+.||.++|+|++..+.|+|.|++||+|.+|+..
T Consensus 2 ~~C~~~pC~ngg~C~~~~~~y~C~C~~g~~G~~Ce~~ 38 (40)
T d1g1sa2 2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYV 38 (40)
T ss_dssp CCCCTTGGGGSEEEEECSSSEEEEECTTEESTTSCEE
T ss_pred CcccCCcCCCCcEEECCCCCeEEeCCCCccCCCCCCC
Confidence 3578889999999999999999999999999999853
|
| >d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Plasminogen activator (tissue-type), t-PA species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=2.7e-06 Score=55.35 Aligned_cols=36 Identities=39% Similarity=0.846 Sum_probs=29.6
Q ss_pred CCCCCCCeecCCCCccCCCCCceeeCCCCcccCCCCcccc
Q psy6570 634 HFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTLVH 673 (713)
Q Consensus 634 ~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~~~~ 673 (713)
++|.|+|+|+.. .....|+|.|++||+|.+|+..+.
T Consensus 4 nPC~ngG~C~~~----~~~~~y~C~C~~g~~G~~Ce~~~~ 39 (41)
T d1tpga1 4 PRCFNGGTCQQA----LYFSDFVCQCPEGFAGKSCEIDTR 39 (41)
T ss_dssp CCSCTTCEEEEE----SSSSCEEEECCTTCBSSSCCBCSS
T ss_pred CCCCCCCEEecC----CCCCCeEECCCCCCCCCCcCcCcC
Confidence 789999999872 223459999999999999998764
|
| >d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Prostaglandin H2 synthase-1, EGF-like module species: Sheep (Ovis aries) [TaxId: 9940]
Probab=97.95 E-value=2e-06 Score=56.19 Aligned_cols=37 Identities=35% Similarity=0.764 Sum_probs=29.6
Q ss_pred CCCCCCCCCCCCcEEeec-CCCceeeCCC-CCcCCCCCc
Q psy6570 552 ANKCTPNYCSNNGTCVLI-EGKPSCKCLP-PYSGKQCTE 588 (713)
Q Consensus 552 ~~~C~~~~C~~~~~C~~~-~g~~~C~C~~-G~~G~~C~~ 588 (713)
++.|.+++|.++|+|++. .++|+|.|.. ||+|+.|+.
T Consensus 2 id~C~~nPC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~ 40 (42)
T d1q4ga2 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40 (42)
T ss_dssp CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTCE
T ss_pred CccCcCCCCCCCCEeeeCCCCCEEEECCCCCcCCcCcCc
Confidence 467888888888899875 5678899975 888888874
|
| >d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=2.2e-06 Score=55.78 Aligned_cols=30 Identities=33% Similarity=0.867 Sum_probs=26.0
Q ss_pred cCCCCCC-CCCCCCeeeccCCCceeeeCCCCcc
Q psy6570 220 TNHCDDK-PCHQSALCINLPSSHTCLCPDHLTE 251 (713)
Q Consensus 220 ~~~C~~~-~C~~~~~C~~~~g~~~C~C~~G~~~ 251 (713)
+|||+.. +| +++|+|++|+|+|.|++||+.
T Consensus 1 idEC~~~~~C--~~~C~n~~Gsy~C~C~~Gy~L 31 (41)
T d1i0ua2 1 IDECQDPDTC--SQLCVNLEGGYKCQCEEGFQL 31 (41)
T ss_dssp CCTTTTTTSC--SSCEECSSSCCEECCCTTEEE
T ss_pred CccCCCCCCC--CCEeECCCCCEEeECCCCCeE
Confidence 4789753 67 899999999999999999984
|
| >d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Plasminogen activator (tissue-type), t-PA species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=5.2e-06 Score=53.92 Aligned_cols=34 Identities=32% Similarity=0.751 Sum_probs=25.9
Q ss_pred CCCCCCCCCcEEeec--CCCceeeCCCCCcCCCCCc
Q psy6570 555 CTPNYCSNNGTCVLI--EGKPSCKCLPPYSGKQCTE 588 (713)
Q Consensus 555 C~~~~C~~~~~C~~~--~g~~~C~C~~G~~G~~C~~ 588 (713)
|.++||.++|+|+.. .++|+|.|++||+|..|+.
T Consensus 1 C~~nPC~ngG~C~~~~~~~~y~C~C~~g~~G~~Ce~ 36 (41)
T d1tpga1 1 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 36 (41)
T ss_dssp CSSCCSCTTCEEEEESSSSCEEEECCTTCBSSSCCB
T ss_pred CcCCCCCCCCEEecCCCCCCeEECCCCCCCCCCcCc
Confidence 556788888888865 3467888888888888875
|
| >d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=2.8e-06 Score=56.13 Aligned_cols=33 Identities=33% Similarity=0.595 Sum_probs=27.7
Q ss_pred ccCCCCCCCCCCCCeeeccCCCceeeeCCCCcc
Q psy6570 219 VTNHCDDKPCHQSALCINLPSSHTCLCPDHLTE 251 (713)
Q Consensus 219 ~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~~ 251 (713)
.+|||+..+...+++|+|++|+|+|.|++||.+
T Consensus 2 DidEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~l 34 (43)
T d1uzka1 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFEL 34 (43)
T ss_dssp CCCGGGSTTSSBTSEEEEETTEEEEECCTTCEE
T ss_pred CccccCCCCcCcCCEeECCCCCEEEecCCCCEE
Confidence 578998764334799999999999999999984
|
| >d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Prostaglandin H2 synthase-1, EGF-like module species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.85 E-value=4.9e-06 Score=54.02 Aligned_cols=36 Identities=33% Similarity=0.824 Sum_probs=31.0
Q ss_pred CCCCCCCCCCCcEEeec-CCCceeeCC-CCCcCCCCCc
Q psy6570 553 NKCTPNYCSNNGTCVLI-EGKPSCKCL-PPYSGKQCTE 588 (713)
Q Consensus 553 ~~C~~~~C~~~~~C~~~-~g~~~C~C~-~G~~G~~C~~ 588 (713)
++|.++||.++|+|++. .++|+|.|+ +||+|+.|+.
T Consensus 2 d~C~~~PC~ngG~C~~~~~~~y~C~C~~~gy~G~~Ce~ 39 (41)
T d1cvua2 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39 (41)
T ss_dssp CTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTCE
T ss_pred CcCcCCCCCCCCEEEECCCCCEEEeCcCCCcCCcCcCc
Confidence 57889999999999875 578999996 6999999975
|
| >d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Thrombomodulin, different EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=1.6e-06 Score=55.48 Aligned_cols=31 Identities=29% Similarity=0.812 Sum_probs=26.3
Q ss_pred cCCCCC-CCCCCCCeeeccCCCceeeeCCCCccc
Q psy6570 220 TNHCDD-KPCHQSALCINLPSSHTCLCPDHLTEE 252 (713)
Q Consensus 220 ~~~C~~-~~C~~~~~C~~~~g~~~C~C~~G~~~~ 252 (713)
+|||+. .+| +++|+|++|+|+|.|++||++.
T Consensus 2 idEC~~~~~C--~~~C~N~~Gsy~C~C~~Gy~l~ 33 (40)
T d1dx5i3 2 IDECENGGFC--SGVCHNLPGTFECICGPDSALA 33 (40)
T ss_dssp CCHHHHCSSC--SSEEEECSSSEEEEECSSSSCE
T ss_pred ccccCCCcCc--cCEeeCCCCCeEeECCCCCeeC
Confidence 577764 367 7999999999999999999853
|
| >d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=8e-06 Score=54.75 Aligned_cols=36 Identities=31% Similarity=0.792 Sum_probs=31.2
Q ss_pred CCCCC-CCCCCCCCeEecCCCCcceeecCCCcccCCCCc
Q psy6570 591 DSPSC-HNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSE 628 (713)
Q Consensus 591 ~~~~C-~~~C~~~g~C~~~~~g~~~C~C~~G~~G~~C~~ 628 (713)
..++| +++|.+ |+|.+.. ++|+|.|++||+|..|+.
T Consensus 7 ~~~~C~~~PC~n-G~C~~~~-~~y~C~C~~G~~G~~Ce~ 43 (48)
T d1autl1 7 LEHPCASLCCGH-GTCIDGI-GSFSCDCRSGWEGRFCQR 43 (48)
T ss_dssp SCCSSSSTTTTS-EEECCCS-SCCCEEECTTEESTTSCE
T ss_pred CCCcccCCCCCC-CEEECCC-CCCeEeCCCCCcCCCccc
Confidence 34778 788986 8999876 889999999999999986
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.81 E-value=0.00032 Score=71.86 Aligned_cols=158 Identities=13% Similarity=0.033 Sum_probs=96.0
Q ss_pred CCceEEE--eccCCeEEEeecCCCCCCeEEEEecCCceEEEEEc-CCCCCcceEEEcCCCCcEEEEccCCCCeEEE----
Q psy6570 27 DPRGVAV--DWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLN-TGLNEPYDIALEPLSGRMFWTELGIKPRISG---- 99 (713)
Q Consensus 27 ~p~gla~--D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~-~~~~~p~~iavD~~~~~ly~td~~~~~~I~~---- 99 (713)
+|..... .+.++.||++|. ..++|.+++++......++. .....|+++++.|..+.+|++..... .+..
T Consensus 71 hP~~s~t~gtpDGr~lfV~d~---~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~-~v~~~~dg 146 (441)
T d1qnia2 71 HPHISMTDGRYDGKYLFINDK---ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEF-VIPQPNDG 146 (441)
T ss_dssp CCEEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECS-CEESSCSS
T ss_pred CCCcceecccCCCCEEEEEcC---CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCC-cccccCcc
Confidence 3544333 356788999999 78999999998765544443 33578999999988888999865433 2211
Q ss_pred ------------EecCCCCcEEEEe-CCCCCCeeEEEeCCCCeEEEEcCCCCc--------------EEEEe--------
Q psy6570 100 ------------ASIDGKNKFNLVD-NNIQWPTGITIDYPSQRLYWADPKART--------------IESIN-------- 144 (713)
Q Consensus 100 ------------~~~dG~~~~~l~~-~~~~~p~glavd~~~~~LY~~d~~~~~--------------I~~~~-------- 144 (713)
...|....+++.. .--..|.+++++++++++|++...... |...+
T Consensus 147 ~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~ 226 (441)
T d1qnia2 147 TDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV 226 (441)
T ss_dssp SCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred cccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence 1122222222211 012368999999999999999754332 11111
Q ss_pred CCC-------CceeEEEecC--------CCCccceeeeee--CCeEEEEeCCCCcEEEEcc
Q psy6570 145 LNG-------KDRFVVYHTE--------DNGYKPYKLEVF--EDNLYFSTYRTNNILKINK 188 (713)
Q Consensus 145 ~~g-------~~~~~~~~~~--------~~~~~p~~i~~~--~~~ly~td~~~~~i~~~~~ 188 (713)
.+| .....+.... .....|.|+++. +.+||++....+.|..++.
T Consensus 227 ~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~ 287 (441)
T d1qnia2 227 KAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAI 287 (441)
T ss_dssp HTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEG
T ss_pred cCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEe
Confidence 011 1111111000 013457777765 6789999988899888874
|
| >d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=4.8e-06 Score=54.77 Aligned_cols=33 Identities=21% Similarity=0.599 Sum_probs=28.0
Q ss_pred ccCCCCCC--CCCCCCeeeccCCCceeeeCCCCccc
Q psy6570 219 VTNHCDDK--PCHQSALCINLPSSHTCLCPDHLTEE 252 (713)
Q Consensus 219 ~~~~C~~~--~C~~~~~C~~~~g~~~C~C~~G~~~~ 252 (713)
.+|||+.. +|. +++|+|++|+|+|.|++||.++
T Consensus 2 DidEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~~~ 36 (44)
T d1lmja1 2 DIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESG 36 (44)
T ss_dssp CCCTTTTCSSTTT-TSCEEEETTEEEECCCSSEEEC
T ss_pred cccccCCCCCCCC-CCEeEcCCCCeEEeCCCCCccC
Confidence 57999865 474 5799999999999999999854
|
| >d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Prostaglandin H2 synthase-1, EGF-like module species: Sheep (Ovis aries) [TaxId: 9940]
Probab=97.75 E-value=8.3e-06 Score=53.21 Aligned_cols=37 Identities=27% Similarity=0.707 Sum_probs=31.4
Q ss_pred CCCC-CCCCCCCCeEecCCCCcceeecCC-CcccCCCCc
Q psy6570 592 SPSC-HNYCDNAGLCSYSKQGKPVCTCVN-GWSGITCSE 628 (713)
Q Consensus 592 ~~~C-~~~C~~~g~C~~~~~g~~~C~C~~-G~~G~~C~~ 628 (713)
++.| .++|.|+|+|+....++|+|.|++ ||+|..|+.
T Consensus 2 id~C~~nPC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~ 40 (42)
T d1q4ga2 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40 (42)
T ss_dssp CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTCE
T ss_pred CccCcCCCCCCCCEeeeCCCCCEEEECCCCCcCCcCcCc
Confidence 3677 789999999987544789999986 999999985
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.75 E-value=0.00045 Score=67.83 Aligned_cols=137 Identities=12% Similarity=0.077 Sum_probs=91.9
Q ss_pred cccCCceeEEEccCcccE--E-ec-CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceE-EEEEcCC----CCC
Q psy6570 3 SISSGNVTRVKREMNLKT--V-LS-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKK-RTLLNTG----LNE 73 (713)
Q Consensus 3 d~~~~~I~~~~~~~~~~~--~-~~-~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~-~~l~~~~----~~~ 73 (713)
....++|..+|+...+.+ + +. ....|.+|++.+.++.||++.. ..+.|.+.+++.... ..+.... ...
T Consensus 7 ~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~---~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~ 83 (337)
T d1pbyb_ 7 PARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPEERVKS 83 (337)
T ss_dssp EETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTTEEEEC
T ss_pred EcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecCCCcccccc
Confidence 345789999999875422 2 12 3456999999999889999987 678999999875443 3332211 246
Q ss_pred cceEEEcCCCCcEEEEccCC----------CCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEE
Q psy6570 74 PYDIALEPLSGRMFWTELGI----------KPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESI 143 (713)
Q Consensus 74 p~~iavD~~~~~ly~td~~~----------~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~ 143 (713)
|.++++.|..++||++.... ...+...++........+. ....|.++++++++.+||++.. .+..+
T Consensus 84 ~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~---~~~~~ 159 (337)
T d1pbyb_ 84 LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLGR---DLHVM 159 (337)
T ss_dssp TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEESS---SEEEE
T ss_pred eeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCCCEEEEEcC---Cccee
Confidence 78999999999999886421 1245555554433333333 3456899999999999999863 34445
Q ss_pred eCC
Q psy6570 144 NLN 146 (713)
Q Consensus 144 ~~~ 146 (713)
+..
T Consensus 160 d~~ 162 (337)
T d1pbyb_ 160 DPE 162 (337)
T ss_dssp ETT
T ss_pred eee
Confidence 543
|
| >d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Prostaglandin H2 synthase-1, EGF-like module species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.74 E-value=4.4e-06 Score=54.25 Aligned_cols=36 Identities=36% Similarity=0.908 Sum_probs=28.6
Q ss_pred cCCCCCCCCCcEeccC-CCCccccCC-CCCcCCCCccC
Q psy6570 417 QCLNLKCQNGGVCVNK-TTGLECDCP-KFYYGKNCQYS 452 (713)
Q Consensus 417 ~C~~~~C~~~~~C~~~-~~~~~C~C~-~G~~g~~C~~~ 452 (713)
+|.+.||.++|+|++. .++|+|.|+ +||+|..|++.
T Consensus 3 ~C~~~PC~ngG~C~~~~~~~y~C~C~~~gy~G~~Ce~p 40 (41)
T d1cvua2 3 PCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTP 40 (41)
T ss_dssp TTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTCEE
T ss_pred cCcCCCCCCCCEEEECCCCCEEEeCcCCCcCCcCcCcC
Confidence 4778889999999864 567899996 68999988754
|
| >d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.74 E-value=5.8e-06 Score=55.09 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=24.3
Q ss_pred cCCCCCCC---CCCCCeeeccCCCceeeeCCCCcc
Q psy6570 220 TNHCDDKP---CHQSALCINLPSSHTCLCPDHLTE 251 (713)
Q Consensus 220 ~~~C~~~~---C~~~~~C~~~~g~~~C~C~~G~~~ 251 (713)
+|||+..+ +..+++|+|++|+|+|.|++||..
T Consensus 1 IdEC~~~~~~~~~C~~~C~Nt~gsy~C~C~~Gy~L 35 (45)
T d1nt0a3 1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYIL 35 (45)
T ss_dssp CCTTC-------CCSSEEEEETTEEEEECCTTEEE
T ss_pred CcCCccCCCCcCCCCCEeecCCCCEEEeCCCCCEE
Confidence 47887542 334899999999999999999983
|
| >d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=7.6e-06 Score=54.49 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=26.2
Q ss_pred cCCCCCCC---CCCCCeeeccCCCceeeeCCCCcc
Q psy6570 220 TNHCDDKP---CHQSALCINLPSSHTCLCPDHLTE 251 (713)
Q Consensus 220 ~~~C~~~~---C~~~~~C~~~~g~~~C~C~~G~~~ 251 (713)
+|||+..+ ++.+++|+|++|+|+|.|++||..
T Consensus 1 IdEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy~l 35 (45)
T d1szba2 1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVL 35 (45)
T ss_dssp CCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEE
T ss_pred CcCCcCCCCCCCCCCCCCccCCCCeEEECCCCCeE
Confidence 57887652 234899999999999999999983
|
| >d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=4.1e-06 Score=55.10 Aligned_cols=35 Identities=26% Similarity=0.752 Sum_probs=27.6
Q ss_pred CCCCCCCCCCCCcEEeecCCCceeeCCCCCc--CCCC
Q psy6570 552 ANKCTPNYCSNNGTCVLIEGKPSCKCLPPYS--GKQC 586 (713)
Q Consensus 552 ~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~--G~~C 586 (713)
++||+..++..+++|+|+.|+|.|.|++||+ |..|
T Consensus 5 idEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy~~~g~~C 41 (43)
T d1emoa1 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC 41 (43)
T ss_dssp CCSSSSTTSCSSSCCCCCSSCCCCCCCTTEEESSSCE
T ss_pred eeccCCcCCCCCCEeECCCCCeEeECCCCcccCCCcc
Confidence 6788766666678899999999999999996 4444
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.70 E-value=0.00063 Score=68.56 Aligned_cols=94 Identities=7% Similarity=-0.141 Sum_probs=58.0
Q ss_pred CCceeEEEccCcccEEecCCCCCceEEEeccCCeEEEeecCC------CCCCeEEEEecCCceEEEEEc-C------CCC
Q psy6570 6 SGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGG------RSSNNIMVSTLEGRKKRTLLN-T------GLN 72 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~------~~~~~I~~~~~~G~~~~~l~~-~------~~~ 72 (713)
..+|+.++.++...+-........++++.+.++.||++.... ...+.|.++++.+......+. . ...
T Consensus 45 ~~~~~~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~ 124 (368)
T d1mdah_ 45 TTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp SEEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred cceEEEEeCCCCcEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccC
Confidence 345777777765422222222334799999999999987421 123568999987644332221 1 135
Q ss_pred CcceEEEcCCCCcEEEEccCCCCeEEEE
Q psy6570 73 EPYDIALEPLSGRMFWTELGIKPRISGA 100 (713)
Q Consensus 73 ~p~~iavD~~~~~ly~td~~~~~~I~~~ 100 (713)
.|.+|++.|..++||+++.... .|.+.
T Consensus 125 ~p~~~a~SpDGk~l~va~~~~~-~v~~~ 151 (368)
T d1mdah_ 125 RVHIIGNCASSACLLFFLFGSS-AAAGL 151 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSS-CEEEE
T ss_pred CccceEECCCCCEEEEEeCCCC-eEEEE
Confidence 6889999999999999875533 44443
|
| >d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement C1S component species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=1.1e-05 Score=52.52 Aligned_cols=29 Identities=38% Similarity=0.835 Sum_probs=24.8
Q ss_pred CCCCC---CCCCCCCeeeccCCCceeeeCCCCcc
Q psy6570 221 NHCDD---KPCHQSALCINLPSSHTCLCPDHLTE 251 (713)
Q Consensus 221 ~~C~~---~~C~~~~~C~~~~g~~~C~C~~G~~~ 251 (713)
|||+. .+| +++|+|++|+|+|.|++||.+
T Consensus 1 dEC~~~~~~~C--~~~C~n~~Gsy~C~C~~Gy~L 32 (42)
T d1nzia2 1 NECTDFVDVPC--SHFCNNFIGGYFCSCPPEYFL 32 (42)
T ss_dssp CTTTC-CCCCS--SSEEEEETTEEEEECCTTCEE
T ss_pred CCCCCCCCcCC--CCEeecCCCCEEEeCCCCCEE
Confidence 57863 367 899999999999999999983
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=97.67 E-value=0.0029 Score=63.16 Aligned_cols=141 Identities=8% Similarity=-0.071 Sum_probs=89.5
Q ss_pred CceeEEEccCcccEEecCCCCCceEEEeccCCeEEEeecCCC------CCCeEEEEecCCceEEEEEcC-------CCCC
Q psy6570 7 GNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGR------SSNNIMVSTLEGRKKRTLLNT-------GLNE 73 (713)
Q Consensus 7 ~~I~~~~~~~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~------~~~~I~~~~~~G~~~~~l~~~-------~~~~ 73 (713)
++|+.++..+.+.+-......+.++++.+.++.||++..... ..+.|.+.++........+.. ....
T Consensus 47 ~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~ 126 (373)
T d2madh_ 47 IQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY 126 (373)
T ss_pred ceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccC
Confidence 456777766543222222344558999999999999875211 235678888775443322211 1345
Q ss_pred cceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCcee
Q psy6570 74 PYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRF 151 (713)
Q Consensus 74 p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~ 151 (713)
|.++++.+..+.+|+..+.....+...+...... + .....|.++++.+..+++|++....+.+..++.+.....
T Consensus 127 ~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~ 200 (373)
T d2madh_ 127 SWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD--D--QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG 200 (373)
T ss_pred CCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeE--E--EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceee
Confidence 7788888888888777655432444444443222 2 123458899999989999999988899988887765443
|
| >d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=5.2e-06 Score=54.32 Aligned_cols=31 Identities=29% Similarity=0.747 Sum_probs=25.9
Q ss_pred cCCCCCCC--CCCCCeeeccCCCceeeeCCCCcc
Q psy6570 220 TNHCDDKP--CHQSALCINLPSSHTCLCPDHLTE 251 (713)
Q Consensus 220 ~~~C~~~~--C~~~~~C~~~~g~~~C~C~~G~~~ 251 (713)
+|||+..+ |. +++|+|++|+|+|.|++||..
T Consensus 2 idEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~l 34 (42)
T d1lmja2 2 IDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQL 34 (42)
T ss_dssp CCHHHHCSSTTT-TSEEEEETTEEEEESCTTSCC
T ss_pred ccccCCCCCCCC-CCEeECCCCCeEEeCCCCCeE
Confidence 57887654 63 579999999999999999984
|
| >d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement protease C1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=1.4e-05 Score=55.45 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=26.2
Q ss_pred ccCCCCCC--------CCCCCCeeeccCCCceeeeCCCCcc
Q psy6570 219 VTNHCDDK--------PCHQSALCINLPSSHTCLCPDHLTE 251 (713)
Q Consensus 219 ~~~~C~~~--------~C~~~~~C~~~~g~~~C~C~~G~~~ 251 (713)
.+|||+.. +++.+++|+|++|+|+|.|++||++
T Consensus 3 DidEC~~~~~~c~~~~~~~c~~~C~Nt~GsY~C~C~~Gy~l 43 (53)
T d1apqa_ 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYEL 43 (53)
T ss_dssp SCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEE
T ss_pred ecccccCCCCCcccCCCCCccCEeEcCCCCeEeECCCCCeE
Confidence 56788653 2334679999999999999999983
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=97.62 E-value=0.00044 Score=68.24 Aligned_cols=100 Identities=13% Similarity=0.053 Sum_probs=70.8
Q ss_pred eEEEeccCCeEEEeecCCCCCCeEEEEecCCceEE-EEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcE
Q psy6570 30 GVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKR-TLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKF 108 (713)
Q Consensus 30 gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~-~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~ 108 (713)
|+|+...++.|+.+. ..+.|.++|++..... ++.......|.+|+++|.+++||++....+ .|.+.+++.....
T Consensus 1 g~a~~~~~~~l~~~~----~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~-~v~~~d~~t~~~~ 75 (346)
T d1jmxb_ 1 GPALKAGHEYMIVTN----YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG-DIYGIDLDTCKNT 75 (346)
T ss_dssp CCCCCTTCEEEEEEE----TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTT-EEEEEETTTTEEE
T ss_pred CccCCCCCcEEEEEc----CCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCC-cEEEEeCccCeee
Confidence 567776555555444 4689999999865543 332233467999999998889999987666 8999988755443
Q ss_pred EEEeCC------CCCCeeEEEeCCCCeEEEEc
Q psy6570 109 NLVDNN------IQWPTGITIDYPSQRLYWAD 134 (713)
Q Consensus 109 ~l~~~~------~~~p~glavd~~~~~LY~~d 134 (713)
..+... ...|.++++++++++||++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~ 107 (346)
T d1jmxb_ 76 FHANLSSVPGEVGRSMYSFAISPDGKEVYATV 107 (346)
T ss_dssp EEEESCCSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred eeecccccccccCCceEEEEEecCCCEEEEEe
Confidence 333221 23588999999999999986
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.61 E-value=0.00026 Score=73.77 Aligned_cols=136 Identities=15% Similarity=0.133 Sum_probs=91.9
Q ss_pred cCCceeEEEccCcc------------cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCce--E-------
Q psy6570 5 SSGNVTRVKREMNL------------KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK--K------- 63 (713)
Q Consensus 5 ~~~~I~~~~~~~~~------------~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~--~------- 63 (713)
..++|.|+++++.. ++...++.+|.+|++|+ +++||++|.+......|.++...+.. .
T Consensus 195 ~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p-~g~l~~~e~G~~~~dEln~i~~G~nYGWP~~~g~~~ 273 (450)
T d1crua_ 195 YMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP-NGKLLQSEQGPNSDDEINLIVKGGNYGWPNVAGYKD 273 (450)
T ss_dssp CSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT-TSCEEEEEECSSSCEEEEECCTTCBCCTTTCSSSSS
T ss_pred ccCceEEeeccccccccccccccccceEEEeccccccceeecc-cceeeeccccccccccccccccccccCCceecCCcC
Confidence 35899999988753 45688999999999998 68999999864334455554322110 0
Q ss_pred ------------------------------------------------EEEEc-------------------CCCCCcce
Q psy6570 64 ------------------------------------------------RTLLN-------------------TGLNEPYD 76 (713)
Q Consensus 64 ------------------------------------------------~~l~~-------------------~~~~~p~~ 76 (713)
..... .....|.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Psiapsg 353 (450)
T d1crua_ 274 DSGYAYANYSAAANKSIKDLAQNGVKVAAGVPVTKESEWTGKNFVPPLKTLYTVQDTYNYNDPTCGEMTYICWPTVAPSS 353 (450)
T ss_dssp CSSCCEECGGGSSCTTCCCCCSTTSSCCTTCCEECGGGCCCSSBCCCSEEECCCCTTCCSCCGGGTTCGGGGSSCCCBCC
T ss_pred CCCcccCCcccccccccccccccccccccCCCcccccccccccccccccccccccccccccccccCCCceeecccccCcc
Confidence 00000 00114566
Q ss_pred EEE--------cCCCCcEEEEccCCCCeEEEEecCCCCcEE-----EEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEE
Q psy6570 77 IAL--------EPLSGRMFWTELGIKPRISGASIDGKNKFN-----LVDNNIQWPTGITIDYPSQRLYWADPKARTIES 142 (713)
Q Consensus 77 iav--------D~~~~~ly~td~~~~~~I~~~~~dG~~~~~-----l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~ 142 (713)
|++ -.-++.||++++... +|+++.++...... .+.....+|.+|++.++...||+++...++|++
T Consensus 354 ~~fY~g~~~~fp~~~g~lfvg~l~~~-~i~~v~~~~~~~~~~~~~~~~~~~~~R~rdv~~gpDGs~lyv~~d~~G~i~r 431 (450)
T d1crua_ 354 AYVYKGGKKAITGWENTLLVPSLKRG-VIFRIKLDPTYSTTYDDAVPMFKSNNRYRDVIASPDGNVLYVLTDTAGNVQK 431 (450)
T ss_dssp CEECCCCTTCCTTCTTEEEEEBSSSC-CEEEEEECTTSSSEEEEEEEESCCSSCEEEEEECTTSSCEEEEECSSCCEEC
T ss_pred ceEecCCcccCcccCCCEEEEECcCC-EEEEEEEcCCCceeeEEEEeccCCCCCceEEEECCCCCEEEEEECCCCCEec
Confidence 665 112578999998877 89999888654322 222345689999999876679999999999987
|
| >d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=4.8e-06 Score=54.79 Aligned_cols=32 Identities=28% Similarity=0.628 Sum_probs=26.5
Q ss_pred ccCCCCCC--CCCCCCeeeccCCCceeeeCCCCcc
Q psy6570 219 VTNHCDDK--PCHQSALCINLPSSHTCLCPDHLTE 251 (713)
Q Consensus 219 ~~~~C~~~--~C~~~~~C~~~~g~~~C~C~~G~~~ 251 (713)
.+|||+.. .|. +++|+|++|+|+|.|++||+.
T Consensus 2 DinEC~~~~~~c~-~~~C~Nt~Gsy~C~C~~Gy~l 35 (43)
T d1uzka2 2 DIDECQELPGLCQ-GGKCINTFGSFQCRCPTGYYL 35 (43)
T ss_dssp ECCHHHHCGGGGB-TSEEEECSSCEEEECCTTCCB
T ss_pred CcccccCCCCCcC-CCEEECCCCCeEeECCCCCeE
Confidence 46888755 353 589999999999999999984
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=97.58 E-value=0.00069 Score=66.74 Aligned_cols=85 Identities=14% Similarity=0.094 Sum_probs=63.4
Q ss_pred ccCCceeEEEccCcccE--E-ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCC------CCCc
Q psy6570 4 ISSGNVTRVKREMNLKT--V-LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG------LNEP 74 (713)
Q Consensus 4 ~~~~~I~~~~~~~~~~~--~-~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~------~~~p 74 (713)
...++|..+|+.+.+.+ + +.....|.+|++.+.++.||++.. ..+.|.+.++........+... ...|
T Consensus 15 ~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~---~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~ 91 (346)
T d1jmxb_ 15 NYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSM 91 (346)
T ss_dssp ETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESCCSTTEEEECS
T ss_pred cCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC---CCCcEEEEeCccCeeeeeecccccccccCCce
Confidence 45678999999876422 2 344567999999999999999998 6789999998865543333221 2358
Q ss_pred ceEEEcCCCCcEEEEcc
Q psy6570 75 YDIALEPLSGRMFWTEL 91 (713)
Q Consensus 75 ~~iavD~~~~~ly~td~ 91 (713)
.+|+++|..++||++..
T Consensus 92 ~~v~~s~DG~~l~v~~~ 108 (346)
T d1jmxb_ 92 YSFAISPDGKEVYATVN 108 (346)
T ss_dssp SCEEECTTSSEEEEEEE
T ss_pred EEEEEecCCCEEEEEec
Confidence 89999998888998863
|
| >d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=1.3e-05 Score=51.61 Aligned_cols=32 Identities=38% Similarity=0.666 Sum_probs=27.2
Q ss_pred cCCCCCCCCCCCCeeeccCCCceeeeCCCCcc
Q psy6570 220 TNHCDDKPCHQSALCINLPSSHTCLCPDHLTE 251 (713)
Q Consensus 220 ~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~~ 251 (713)
+|||+.++.+.+++|++++++|+|.|++||..
T Consensus 2 ~neC~~~nggC~h~C~n~~g~~~C~C~~Gy~L 33 (40)
T d3bpse1 2 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQL 33 (40)
T ss_dssp SCGGGTGGGGCSSEEEECSSSEEEECCTTCCE
T ss_pred cccCCCCCCCCcCEEEcCCCCEEEECCCCCEE
Confidence 68998765333899999999999999999984
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.49 E-value=0.0015 Score=67.18 Aligned_cols=168 Identities=9% Similarity=-0.022 Sum_probs=105.9
Q ss_pred cEEecCCCCCceEEEeccCC-eEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeE
Q psy6570 19 KTVLSNLHDPRGVAVDWVGK-NLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRI 97 (713)
Q Consensus 19 ~~~~~~~~~p~gla~D~~~~-~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I 97 (713)
++++.....|..+.+++... .++++.. ..++|.+.|+........+..+ ..|.+|++.|.+++||.+... . .|
T Consensus 12 ~~~~~~~~~p~~~~~~~d~~~~~~V~~~---~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d-~-~v 85 (426)
T d1hzua2 12 KVLVKPEDRPKKQLNDLDLPNLFSVTLR---DAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRD-A-RI 85 (426)
T ss_dssp EESSCGGGSCSSCCSCCCGGGEEEEEET---TTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETT-S-EE
T ss_pred eeeCCcccCCCcccccCCCCeEEEEEEc---CCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCC-C-CE
Confidence 33345555666666665433 4567777 7899999999765544334344 579999999988888888643 3 78
Q ss_pred EEEecCCCCcEEEEe-CCCCCCeeEEEeC----CCCeEEEEcCCCCcEEEEeCCCCceeEEEecCC---------CCccc
Q psy6570 98 SGASIDGKNKFNLVD-NNIQWPTGITIDY----PSQRLYWADPKARTIESINLNGKDRFVVYHTED---------NGYKP 163 (713)
Q Consensus 98 ~~~~~dG~~~~~l~~-~~~~~p~glavd~----~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~---------~~~~p 163 (713)
.+.+++......+.. .....|.++++++ ++++||++....+.|...+........+..... ....+
T Consensus 86 ~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (426)
T d1hzua2 86 DMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV 165 (426)
T ss_dssp EEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred EEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCce
Confidence 888887655444332 2344577777764 577899998878888888876654433322110 01112
Q ss_pred eeeee--eCCeEEEEeCCCCcEEEEcccCCC
Q psy6570 164 YKLEV--FEDNLYFSTYRTNNILKINKFGNS 192 (713)
Q Consensus 164 ~~i~~--~~~~ly~td~~~~~i~~~~~~~~~ 192 (713)
..+.. ++..++|+....+.|..+......
T Consensus 166 ~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~ 196 (426)
T d1hzua2 166 AAIIASHEHPEFIVNVKETGKVLLVNYKDID 196 (426)
T ss_dssp EEEEECSSSSEEEEEETTTTEEEEEECSSSS
T ss_pred eEEEECCCCCEEEEecCCCCeEEEEEecccc
Confidence 22332 355677777777777766654433
|
| >d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=2.5e-05 Score=51.40 Aligned_cols=31 Identities=29% Similarity=0.673 Sum_probs=24.5
Q ss_pred CCCCCCCCCCCCcEEeecCCCceeeCCCCCc
Q psy6570 552 ANKCTPNYCSNNGTCVLIEGKPSCKCLPPYS 582 (713)
Q Consensus 552 ~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~ 582 (713)
++||+......++.|+|+.|+|+|.|++||.
T Consensus 3 idEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~ 33 (43)
T d1uzka1 3 VNECLDPTTCISGNCVNTPGSYICDCPPDFE 33 (43)
T ss_dssp CCGGGSTTSSBTSEEEEETTEEEEECCTTCE
T ss_pred ccccCCCCcCcCCEeECCCCCEEEecCCCCE
Confidence 6788754333468999999999999999996
|
| >d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-like domain of nidogen-1 domain: EGF-like domain of nidogen-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.47 E-value=1.5e-05 Score=51.14 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=25.1
Q ss_pred CCCCCCCeeeccCCCceeeeCCCCcccc
Q psy6570 226 KPCHQSALCINLPSSHTCLCPDHLTEEL 253 (713)
Q Consensus 226 ~~C~~~~~C~~~~g~~~C~C~~G~~~~~ 253 (713)
++|+.++.|+|++|+|+|.|++||+|+.
T Consensus 7 ~~C~~~A~C~Nt~Gsy~C~C~~Gy~GdG 34 (40)
T d1gl4a2 7 HQCSVHAECRDYATGFCCRCVANYTGNG 34 (40)
T ss_dssp GGSCTTEEEEECSSCEEEEECTTEEECS
T ss_pred CCCCCCCEeecCCCCeEeECCCCCcCCC
Confidence 3688899999999999999999999764
|
| >d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=2.5e-05 Score=50.93 Aligned_cols=30 Identities=33% Similarity=0.842 Sum_probs=23.8
Q ss_pred CCCCC--CCCCCCCcEEeecCCCceeeCCCCCc
Q psy6570 552 ANKCT--PNYCSNNGTCVLIEGKPSCKCLPPYS 582 (713)
Q Consensus 552 ~~~C~--~~~C~~~~~C~~~~g~~~C~C~~G~~ 582 (713)
++||. +..|. ++.|+|+.|+|+|.|++||.
T Consensus 2 idEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~ 33 (42)
T d1lmja2 2 IDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQ 33 (42)
T ss_dssp CCHHHHCSSTTT-TSEEEEETTEEEEESCTTSC
T ss_pred ccccCCCCCCCC-CCEeECCCCCeEEeCCCCCe
Confidence 45665 33564 67999999999999999997
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.43 E-value=0.0013 Score=65.02 Aligned_cols=143 Identities=11% Similarity=0.048 Sum_probs=99.2
Q ss_pred cCCceeEEEccCcccEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCC
Q psy6570 5 SSGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSG 84 (713)
Q Consensus 5 ~~~~I~~~~~~~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~ 84 (713)
..++|+.+++.+...+-+.....+..+++.+.++.|+++-.. ....|.+.++++...+.+. .....+..+++.|...
T Consensus 22 ~~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~--~g~~v~v~d~~~~~~~~~~-~~~~~v~~~~~spdg~ 98 (360)
T d1k32a3 22 SRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTR--EGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGK 98 (360)
T ss_dssp ETTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEET--TEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSS
T ss_pred ECCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcC--CCCEEEEEECCCCcEEEee-CCCceEEeeeeccccc
Confidence 457788888876543334455667899999988888776541 2346889998887766554 3456788999998766
Q ss_pred cEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcC---------CCCcEEEEeCCCCceeE
Q psy6570 85 RMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADP---------KARTIESINLNGKDRFV 152 (713)
Q Consensus 85 ~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~---------~~~~I~~~~~~g~~~~~ 152 (713)
+|..... .. .|+..++++.....++.........+++.+.+.+|.++.. ....++..++.+.....
T Consensus 99 ~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~ 173 (360)
T d1k32a3 99 FAVVAND-RF-EIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA 173 (360)
T ss_dssp EEEEEET-TS-EEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred ccceecc-cc-ccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceee
Confidence 6666543 34 6888888887777777666666788999999888887742 12246666666554433
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=97.42 E-value=0.011 Score=58.60 Aligned_cols=180 Identities=9% Similarity=-0.034 Sum_probs=104.6
Q ss_pred cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCC------CCCcceEEEcCCCCcEEEEccCCCCe
Q psy6570 23 SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG------LNEPYDIALEPLSGRMFWTELGIKPR 96 (713)
Q Consensus 23 ~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~------~~~p~~iavD~~~~~ly~td~~~~~~ 96 (713)
.....|.++++.+.+..+|++.. ..+.+.+.+.+........... ...+..++.++....++.++. . +
T Consensus 162 ~~~~~~~~~~~s~~g~~~~v~~~---~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~ 235 (373)
T d2madh_ 162 QLLSSPTCYHIHPGAPSTFYLLC---AQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYS--G-K 235 (373)
T ss_pred EEeccceeEEEecCCCcEEEEEc---CCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCC--c-e
Confidence 34456888888888888998888 6778888887665433322111 122334555543333333321 2 4
Q ss_pred EEEEecCCCCcEEEEeC------------CCCCCeeEEEeCCCCeEEEEcCC---------CCcEEEEeCCCCceeEEEe
Q psy6570 97 ISGASIDGKNKFNLVDN------------NIQWPTGITIDYPSQRLYWADPK---------ARTIESINLNGKDRFVVYH 155 (713)
Q Consensus 97 I~~~~~dG~~~~~l~~~------------~~~~p~glavd~~~~~LY~~d~~---------~~~I~~~~~~g~~~~~~~~ 155 (713)
+.+.+.++.....+... ....+..+++.+...++|++... .+.|+.++.....+...+.
T Consensus 236 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~ 315 (373)
T d2madh_ 236 ILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS 315 (373)
T ss_pred EEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec
Confidence 55555544332222111 11234567777778888876533 3456666654433322222
Q ss_pred cCCCCccceeeeee--CCe-EEEEeCCCCcEEEEcccCCCcceeeeccccccccEEEEe
Q psy6570 156 TEDNGYKPYKLEVF--EDN-LYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVLILQ 211 (713)
Q Consensus 156 ~~~~~~~p~~i~~~--~~~-ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~ 211 (713)
. ...|.++++. +.+ ||++....+.|..++...++.+..+......|..|.+..
T Consensus 316 ~---~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~ 371 (373)
T d2madh_ 316 L---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMN 371 (373)
T ss_pred C---CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEec
Confidence 2 3456666664 444 677888888999999988888777766567777777653
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=97.39 E-value=0.0043 Score=61.17 Aligned_cols=179 Identities=12% Similarity=0.143 Sum_probs=102.3
Q ss_pred ceeEEEccCcccEEecCCCCCceEEEec---cC----CeEEEeecCCCCCCeEEEEecCC--ceEEEEEc------CCCC
Q psy6570 8 NVTRVKREMNLKTVLSNLHDPRGVAVDW---VG----KNLYWTDAGGRSSNNIMVSTLEG--RKKRTLLN------TGLN 72 (713)
Q Consensus 8 ~I~~~~~~~~~~~~~~~~~~p~gla~D~---~~----~~ly~td~~~~~~~~I~~~~~~G--~~~~~l~~------~~~~ 72 (713)
-|+.++++|++... ..+.++..|.+-. .. ..++.++... ...+|..+..++ .....+.. ..+.
T Consensus 51 Gl~vYdL~G~~l~~-~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~-~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~ 128 (353)
T d1h6la_ 51 GLAVYSLEGKMLHS-YHTGKLNNVDIRYDFPLNGKKVDIAAASNRSE-GKNTIEIYAIDGKNGTLQSITDPNRPIASAID 128 (353)
T ss_dssp CCEEEETTCCEEEE-CCSSCEEEEEEEEEEEETTEEEEEEEEEECCT-TTCEEEEEEEETTTTEEEECSCSSSCEECSSS
T ss_pred CEEEEcCCCcEEEe-cccCCcCccccccccccCCcceEEEEEeCCcC-cceeEEEEEecCcccccccccccccccccccC
Confidence 38888888764333 3456666555431 01 1234444310 134555554443 32332211 2345
Q ss_pred CcceEEE--cCCCCcEEEEccCCCCeEEE--EecCCCCc--EEEEe--CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEe
Q psy6570 73 EPYDIAL--EPLSGRMFWTELGIKPRISG--ASIDGKNK--FNLVD--NNIQWPTGITIDYPSQRLYWADPKARTIESIN 144 (713)
Q Consensus 73 ~p~~iav--D~~~~~ly~td~~~~~~I~~--~~~dG~~~--~~l~~--~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~ 144 (713)
.|.||++ ++.++.+|..-....++++. +..++... ..++. ..-..+.|+++|..+++||+++.. ..||+++
T Consensus 129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~-~Giw~~~ 207 (353)
T d1h6la_ 129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEED-EAIWKFS 207 (353)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETT-TEEEEEE
T ss_pred cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCc-cceEEEE
Confidence 6889988 88888766543333335544 44444332 22221 123468999999999999999975 4689998
Q ss_pred CCC---CceeEEEec-C-CCCccceeeeee-----CCeEEEEeCCCCcEEEEccc
Q psy6570 145 LNG---KDRFVVYHT-E-DNGYKPYKLEVF-----EDNLYFSTYRTNNILKINKF 189 (713)
Q Consensus 145 ~~g---~~~~~~~~~-~-~~~~~p~~i~~~-----~~~ly~td~~~~~i~~~~~~ 189 (713)
++- ...+++... . .....|.||+++ +++|.+++.+.++...++..
T Consensus 208 a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~ 262 (353)
T d1h6la_ 208 AEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQ 262 (353)
T ss_dssp SSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecC
Confidence 753 334444332 1 235678899876 34788888777776666543
|
| >d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Epidermal growth factor, EGF species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.39 E-value=7.5e-05 Score=51.34 Aligned_cols=35 Identities=40% Similarity=0.859 Sum_probs=28.2
Q ss_pred CCCCCCCeecCCCCccCCCCCceeeCCCCcccCCCCccc
Q psy6570 634 HFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTLV 672 (713)
Q Consensus 634 ~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~~~ 672 (713)
++|.|+|+|.. +.....++|.|++||+|.+||...
T Consensus 12 ~~C~NgG~C~~----~~~~~~~~C~C~~gy~G~~Ce~~~ 46 (53)
T d3egfa_ 12 GYCLNGGVCMH----IESLDSYTCNCVIGYSGDRCQTRD 46 (53)
T ss_dssp CCSCSSCEEEE----ESSSSCEEEECCTTCCSSSSCCCS
T ss_pred CCCCCCcEeec----cCCCCCeEeECCCCCcCCCCccCC
Confidence 68999999975 123345999999999999998753
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=97.38 E-value=0.002 Score=66.46 Aligned_cols=149 Identities=9% Similarity=-0.020 Sum_probs=100.6
Q ss_pred CeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEe-CCCC
Q psy6570 38 KNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVD-NNIQ 116 (713)
Q Consensus 38 ~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~-~~~~ 116 (713)
+.++++.. ..++|.+.|+++......+..+ ..|.+|++.|..++||++... . .|...+++....+.+.. ....
T Consensus 32 ~~~~v~~~---d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~d-g-~v~~~d~~t~~~~~~~~i~~~~ 105 (432)
T d1qksa2 32 NLFSVTLR---DAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRD-G-KVNMIDLWMKEPTTVAEIKIGS 105 (432)
T ss_dssp GEEEEEET---TTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETT-S-EEEEEETTSSSCCEEEEEECCS
T ss_pred cEEEEEEc---CCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCC-C-CEEEEEeeCCCceEEEEEecCC
Confidence 34568887 7899999999876655555455 579999999988889988643 3 78888887544433322 2345
Q ss_pred CCeeEEEeC----CCCeEEEEcCCCCcEEEEeCCCCceeEEEecCC---------CCccceeeee--eCCeEEEEeCCCC
Q psy6570 117 WPTGITIDY----PSQRLYWADPKARTIESINLNGKDRFVVYHTED---------NGYKPYKLEV--FEDNLYFSTYRTN 181 (713)
Q Consensus 117 ~p~glavd~----~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~---------~~~~p~~i~~--~~~~ly~td~~~~ 181 (713)
.|.++++.+ ++++||++....+.|..++.+............ ....+.+|.+ ++..+||+....+
T Consensus 106 ~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~ 185 (432)
T d1qksa2 106 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 185 (432)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCC
Confidence 678888764 567899999888999999987654433322110 0112233433 3567888888888
Q ss_pred cEEEEcccCCC
Q psy6570 182 NILKINKFGNS 192 (713)
Q Consensus 182 ~i~~~~~~~~~ 192 (713)
.|..++.....
T Consensus 186 ~i~~~d~~~~~ 196 (432)
T d1qksa2 186 KILLVDYTDLN 196 (432)
T ss_dssp EEEEEETTCSS
T ss_pred eEEEEEccCCC
Confidence 88888765443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.36 E-value=0.0044 Score=60.31 Aligned_cols=130 Identities=10% Similarity=0.054 Sum_probs=83.4
Q ss_pred EEeecCCCCCCeEEEEecCCceEEEEEc-C-CCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCC----
Q psy6570 41 YWTDAGGRSSNNIMVSTLEGRKKRTLLN-T-GLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNN---- 114 (713)
Q Consensus 41 y~td~~~~~~~~I~~~~~~G~~~~~l~~-~-~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~---- 114 (713)
+++-. ..++|.+.|+........+. . ....|.+|+++|.+++||++..... .|.+.++.......-+...
T Consensus 4 ~vt~~---~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~-~v~v~D~~t~~~~~~~~~~~~~~ 79 (337)
T d1pbyb_ 4 ILAPA---RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSE-SLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEE---TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTT-EEEEEETTTCCEEEEEECCBTTE
T ss_pred EEEEc---CCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCC-eEEEEECCCCcEEEEEecCCCcc
Confidence 44555 56889999987655433332 2 2467999999998788999876655 8999998754443333211
Q ss_pred -CCCCeeEEEeCCCCeEEEEcC-----------CCCcEEEEeCCCCceeEEEecCCCCccceeeeee--CCeEEEEe
Q psy6570 115 -IQWPTGITIDYPSQRLYWADP-----------KARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF--EDNLYFST 177 (713)
Q Consensus 115 -~~~p~glavd~~~~~LY~~d~-----------~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~--~~~ly~td 177 (713)
...+.+++++++.++||++.. ...++..++............ ...|.++++. +.++|+++
T Consensus 80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~ 153 (337)
T d1pbyb_ 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA---PRQITMLAWARDGSKLYGLG 153 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC---CSSCCCEEECTTSSCEEEES
T ss_pred cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc---cCCceEEEEcCCCCEEEEEc
Confidence 246789999999999999863 234566666655443333332 2345556554 55777764
|
| >d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Epidermal growth factor, EGF species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.32 E-value=0.00011 Score=50.44 Aligned_cols=36 Identities=39% Similarity=0.921 Sum_probs=27.9
Q ss_pred CCCCCCCCCCcEEeecC--CCceeeCCCCCcCCCCCcC
Q psy6570 554 KCTPNYCSNNGTCVLIE--GKPSCKCLPPYSGKQCTER 589 (713)
Q Consensus 554 ~C~~~~C~~~~~C~~~~--g~~~C~C~~G~~G~~C~~~ 589 (713)
.|.+++|.++|+|.... ..|+|.|++||+|+.|+..
T Consensus 8 ~c~~~~C~NgG~C~~~~~~~~~~C~C~~gy~G~~Ce~~ 45 (53)
T d3egfa_ 8 SSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR 45 (53)
T ss_dssp TTSSCCSCSSCEEEEESSSSCEEEECCTTCCSSSSCCC
T ss_pred CCCCCCCCCCcEeeccCCCCCeEeECCCCCcCCCCccC
Confidence 46677888889997543 4788999999999888753
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.30 E-value=0.003 Score=62.49 Aligned_cols=140 Identities=11% Similarity=-0.069 Sum_probs=85.4
Q ss_pred CCceeEEEccCcccEEecCCCCCceEEEeccCCeEEEeecCCC------CCCeEEEEecCCceEE-EEEcC------CCC
Q psy6570 6 SGNVTRVKREMNLKTVLSNLHDPRGVAVDWVGKNLYWTDAGGR------SSNNIMVSTLEGRKKR-TLLNT------GLN 72 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~~~~~~~p~gla~D~~~~~ly~td~~~~------~~~~I~~~~~~G~~~~-~l~~~------~~~ 72 (713)
.+.|+.++.++.+.+-........+|++.+.++.||+++.... ..+.|.+.++...... .+... -..
T Consensus 27 ~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~ 106 (355)
T d2bbkh_ 27 VTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGT 106 (355)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred cCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCC
Confidence 3457778877654222112233447999999999999874110 1356888888754433 33211 135
Q ss_pred CcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCC-------CCCCeeEEEeCCCCeEEEEcCCCCcEEEEeC
Q psy6570 73 EPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNN-------IQWPTGITIDYPSQRLYWADPKARTIESINL 145 (713)
Q Consensus 73 ~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~-------~~~p~glavd~~~~~LY~~d~~~~~I~~~~~ 145 (713)
.|.++++.+..++||+++......+...++........+... ...+..+++.++...+||.......+...+.
T Consensus 107 ~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~ 186 (355)
T d2bbkh_ 107 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT 186 (355)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC
T ss_pred CCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEec
Confidence 689999999999999988665435555655543322222211 1234567888778888888766666555554
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.25 E-value=0.005 Score=61.37 Aligned_cols=186 Identities=13% Similarity=0.088 Sum_probs=114.5
Q ss_pred CCcccCCceeEEEccCcc--cE-EecCCCCCceEEEeccCCeEEEeecCCC----------------CCCeEEEEecCCc
Q psy6570 1 MASISSGNVTRVKREMNL--KT-VLSNLHDPRGVAVDWVGKNLYWTDAGGR----------------SSNNIMVSTLEGR 61 (713)
Q Consensus 1 vad~~~~~I~~~~~~~~~--~~-~~~~~~~p~gla~D~~~~~ly~td~~~~----------------~~~~I~~~~~~G~ 61 (713)
|.|..+.+|.||+++..+ ++ .++....|+|+.+....+..|+...++. ....+..++.+..
T Consensus 104 VNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm 183 (459)
T d1fwxa2 104 MNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKW 183 (459)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTT
T ss_pred EEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCc
Confidence 356678999999999854 22 2567788999998766677788764220 0122455666543
Q ss_pred eEEEEEcCCCCCcceEEEcCCCCcEEEEccCCC------------------------------------CeEEEEecC--
Q psy6570 62 KKRTLLNTGLNEPYDIALEPLSGRMFWTELGIK------------------------------------PRISGASID-- 103 (713)
Q Consensus 62 ~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~------------------------------------~~I~~~~~d-- 103 (713)
....-+..+ ..|.++++++..+++|+|..... ..+.+++..
T Consensus 184 ~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~ 262 (459)
T d1fwxa2 184 EVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKE 262 (459)
T ss_dssp EEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG
T ss_pred eEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeeccccc
Confidence 332111122 46889999999999999864321 011122211
Q ss_pred -CCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC--------C-ceeEEEecCCCCccceeeeee-CCe
Q psy6570 104 -GKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNG--------K-DRFVVYHTEDNGYKPYKLEVF-EDN 172 (713)
Q Consensus 104 -G~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g--------~-~~~~~~~~~~~~~~p~~i~~~-~~~ 172 (713)
+......+. .-+.|.|+.++|++++||++......+.++++.- . .+..+.........|+=-+++ .++
T Consensus 263 ~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~ 341 (459)
T d1fwxa2 263 ASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGN 341 (459)
T ss_dssp --CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSE
T ss_pred CCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCce
Confidence 111111111 1256999999999999999999999999999742 1 122222222224466656666 457
Q ss_pred EEEEeCCCCcEEEEcc
Q psy6570 173 LYFSTYRTNNILKINK 188 (713)
Q Consensus 173 ly~td~~~~~i~~~~~ 188 (713)
.|.+-.-...|.+.+.
T Consensus 342 aytslfids~v~kw~~ 357 (459)
T d1fwxa2 342 AYTSLFLDSQVVKWNI 357 (459)
T ss_dssp EEEEETTTTEEEEEEH
T ss_pred EEEEeeccceEEEEec
Confidence 8888777777777764
|
| >d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=3.4e-05 Score=50.61 Aligned_cols=31 Identities=26% Similarity=0.714 Sum_probs=24.3
Q ss_pred CCCCCC--CCCCCCcEEeecCCCceeeCCCCCcC
Q psy6570 552 ANKCTP--NYCSNNGTCVLIEGKPSCKCLPPYSG 583 (713)
Q Consensus 552 ~~~C~~--~~C~~~~~C~~~~g~~~C~C~~G~~G 583 (713)
+++|.. ..|. ++.|+|+.|+|+|.|++||..
T Consensus 3 inEC~~~~~~c~-~~~C~Nt~Gsy~C~C~~Gy~l 35 (43)
T d1uzka2 3 IDECQELPGLCQ-GGKCINTFGSFQCRCPTGYYL 35 (43)
T ss_dssp CCHHHHCGGGGB-TSEEEECSSCEEEECCTTCCB
T ss_pred cccccCCCCCcC-CCEEECCCCCeEeECCCCCeE
Confidence 567763 3464 578999999999999999973
|
| >d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-like domain of nidogen-1 domain: EGF-like domain of nidogen-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.22 E-value=4.6e-05 Score=48.74 Aligned_cols=26 Identities=27% Similarity=0.691 Sum_probs=20.4
Q ss_pred CCCCCcEEeecCCCceeeCCCCCcCC
Q psy6570 559 YCSNNGTCVLIEGKPSCKCLPPYSGK 584 (713)
Q Consensus 559 ~C~~~~~C~~~~g~~~C~C~~G~~G~ 584 (713)
.|+.+++|+|++|+|.|.|++||+|.
T Consensus 8 ~C~~~A~C~Nt~Gsy~C~C~~Gy~Gd 33 (40)
T d1gl4a2 8 QCSVHAECRDYATGFCCRCVANYTGN 33 (40)
T ss_dssp GSCTTEEEEECSSCEEEEECTTEEEC
T ss_pred CCCCCCEeecCCCCeEeECCCCCcCC
Confidence 47777888888888888888888753
|
| >d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Heregulin-alpha, EGF-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=3.9e-05 Score=55.32 Aligned_cols=37 Identities=32% Similarity=0.864 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCcEEee-----cCCCceeeCCCCCcCCCCCcC
Q psy6570 553 NKCTPNYCSNNGTCVL-----IEGKPSCKCLPPYSGKQCTER 589 (713)
Q Consensus 553 ~~C~~~~C~~~~~C~~-----~~g~~~C~C~~G~~G~~C~~~ 589 (713)
++|..++|.++|+|.. ..++|+|.|++||+|.+|+..
T Consensus 7 ~ec~~~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~Ce~~ 48 (63)
T d1haea_ 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTEN 48 (63)
T ss_dssp CHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEE
T ss_pred CCCcCCcCCCCCEEeecccccCCCCEEeECCCCCCCCCcCCC
Confidence 5677788989999953 346788999999999888754
|
| >d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Heregulin-alpha, EGF-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=3.9e-05 Score=55.29 Aligned_cols=37 Identities=27% Similarity=0.708 Sum_probs=29.1
Q ss_pred CCCcCCCCCCCCCcEec-----cCCCCccccCCCCCcCCCCc
Q psy6570 414 TCQQCLNLKCQNGGVCV-----NKTTGLECDCPKFYYGKNCQ 450 (713)
Q Consensus 414 ~C~~C~~~~C~~~~~C~-----~~~~~~~C~C~~G~~g~~C~ 450 (713)
.|.+|..++|.++|+|. +..++|.|.|++||+|..|+
T Consensus 5 ~c~ec~~~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~Ce 46 (63)
T d1haea_ 5 KCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46 (63)
T ss_dssp ECCHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSC
T ss_pred cCCCCcCCcCCCCCEEeecccccCCCCEEeECCCCCCCCCcC
Confidence 35566777898989994 45567889999999998887
|
| >d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Epidermal growth factor, EGF species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.17 E-value=5.7e-05 Score=50.77 Aligned_cols=34 Identities=35% Similarity=0.772 Sum_probs=27.3
Q ss_pred CCCCCCCeecCCCCccCCCCCceeeCCCCcccCCCCcc
Q psy6570 634 HFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTL 671 (713)
Q Consensus 634 ~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~~ 671 (713)
++|.|+|+|.. +.....++|.|+.||+|.+|+..
T Consensus 10 ~~C~ngG~C~~----~~~~~~~~C~C~~gy~G~~Ce~~ 43 (48)
T d1nqlb_ 10 GYCLHDGVCMY----IEALDKYACNCVVGYIGERCQYR 43 (48)
T ss_dssp CEECTTCEEEE----ETTTTEEEEEECTTEESTTSCEE
T ss_pred CCCCCCcEEee----eCCCCCeEEeCCCCcccCCCCcC
Confidence 67899999975 12334589999999999999875
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.14 E-value=0.014 Score=55.09 Aligned_cols=190 Identities=15% Similarity=0.087 Sum_probs=109.6
Q ss_pred cCCceeEEEccCcc-cEEecCCCCCceEEEeccCCeEEEeecCCC--CCCeEEEEecCCceEEEEEcCC------CCCcc
Q psy6570 5 SSGNVTRVKREMNL-KTVLSNLHDPRGVAVDWVGKNLYWTDAGGR--SSNNIMVSTLEGRKKRTLLNTG------LNEPY 75 (713)
Q Consensus 5 ~~~~I~~~~~~~~~-~~~~~~~~~p~gla~D~~~~~ly~td~~~~--~~~~I~~~~~~G~~~~~l~~~~------~~~p~ 75 (713)
..+.|+.+++++.. +.+........+.++.+.+++|+++..... ....|+++++++...+.|.... .....
T Consensus 19 ~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~ 98 (281)
T d1k32a2 19 CCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTD 98 (281)
T ss_dssp ETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSE
T ss_pred eCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCcccccc
Confidence 35678999998755 444455555677889988888887643111 1235899999988777664332 12345
Q ss_pred eEEEcCCCCcEEEEccCCC----CeEEEEecCCCCcEEE-----------------Ee----------------------
Q psy6570 76 DIALEPLSGRMFWTELGIK----PRISGASIDGKNKFNL-----------------VD---------------------- 112 (713)
Q Consensus 76 ~iavD~~~~~ly~td~~~~----~~I~~~~~dG~~~~~l-----------------~~---------------------- 112 (713)
.++..|..+.|+++..... ..+...+.++...+.. ..
T Consensus 99 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (281)
T d1k32a2 99 VAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIE 178 (281)
T ss_dssp EEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEE
T ss_pred ccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeee
Confidence 6677777777887754321 1334444443221110 00
Q ss_pred ----------CCCCCCeeEEEeCCCCeEEEEc--CCCCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEeCCC
Q psy6570 113 ----------NNIQWPTGITIDYPSQRLYWAD--PKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRT 180 (713)
Q Consensus 113 ----------~~~~~p~glavd~~~~~LY~~d--~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~~ 180 (713)
.....-...+.. .+.+++.. .....|+.++++|...+.+.... ...+..++.++.+|+++. .
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~--~~~~~~~SpDG~~I~f~~--~ 252 (281)
T d1k32a2 179 VNSGAFKKIVDMSTHVSSPVIV--GHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFSK--G 252 (281)
T ss_dssp EETTEEEEEECCSSCCEEEEEE--TTEEEEEECTTSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEEE--T
T ss_pred ccccceeeccCCccccceeeee--ccccceecccccccceEEEeCCCCceEEeecCC--CcccccCcCCCCEEEEEe--C
Confidence 000011112222 33455543 24567999999998877664432 223445777888888865 3
Q ss_pred CcEEEEcccCCCcceeeecc
Q psy6570 181 NNILKINKFGNSDFNVLANN 200 (713)
Q Consensus 181 ~~i~~~~~~~~~~~~~~~~~ 200 (713)
+.|+.++..++....+....
T Consensus 253 ~~l~~~d~~~g~~~~i~~~~ 272 (281)
T d1k32a2 253 GSIYIFNPDTEKIEKIEIGD 272 (281)
T ss_dssp TEEEEECTTTCCEEECCCCC
T ss_pred CEEEEEECCCCCEEEeccCC
Confidence 56899988766655444333
|
| >d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=0.00011 Score=43.82 Aligned_cols=29 Identities=24% Similarity=0.778 Sum_probs=25.6
Q ss_pred CCCCC-CCCCCCCeeeccCCCceeeeCCCCc
Q psy6570 221 NHCDD-KPCHQSALCINLPSSHTCLCPDHLT 250 (713)
Q Consensus 221 ~~C~~-~~C~~~~~C~~~~g~~~C~C~~G~~ 250 (713)
|+|+. +||+ ++.|.|..|+|+|.|.+||.
T Consensus 2 dECsignpCG-nGTCtNviGgFec~C~~GFe 31 (39)
T d1emoa2 2 DECSVGNPCG-NGTCKNVIGGFECTCEEGFE 31 (39)
T ss_dssp CGGGTTCSSS-SSCEEECSSSEEECCSSSSC
T ss_pred CccccCCccC-CceeeecccceEEeecCCcC
Confidence 67775 5897 68999999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.10 E-value=0.007 Score=58.99 Aligned_cols=156 Identities=6% Similarity=-0.078 Sum_probs=89.8
Q ss_pred CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCC
Q psy6570 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKN 106 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~ 106 (713)
.|..|++++.+++|+++.. +.|.+.+++......++.........|++.|. +.++.+-.... .|..-++....
T Consensus 19 ~~~~~a~~~~g~~l~~~~~-----~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~-g~~latg~~dg-~i~iwd~~~~~ 91 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCNG-----TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS-GYYCASGDVHG-NVRIWDTTQTT 91 (311)
T ss_dssp CCCCCEECTTSSEEEEEET-----TEEEEEETTCSSCCEEECCCSSCEEEEEECTT-SSEEEEEETTS-EEEEEESSSTT
T ss_pred CeEEEEEcCCCCEEEEEeC-----CEEEEEECCCCceeEEEcCCCCCEEEEEEeCC-CCeEeccccCc-eEeeeeeeccc
Confidence 4667899999988887753 46888887654443344343467889999985 44444443333 67776766544
Q ss_pred c--EEEEeCCCCCCeeEEEeCCCCeEEEEcCC-CCcEEEEeCCCCceeEEEecCCCCccceeeeee--CCeEEEEeCCCC
Q psy6570 107 K--FNLVDNNIQWPTGITIDYPSQRLYWADPK-ARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF--EDNLYFSTYRTN 181 (713)
Q Consensus 107 ~--~~l~~~~~~~p~glavd~~~~~LY~~d~~-~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~--~~~ly~td~~~~ 181 (713)
. ...+.........|++++.+.+|..+-.. ...+...+++-......+.. .......+++. +++++++-...+
T Consensus 92 ~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~--h~~~v~~v~~~~~~~~~l~sgs~d~ 169 (311)
T d1nr0a1 92 HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG--QARAMNSVDFKPSRPFRIISGSDDN 169 (311)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCC--CSSCEEEEEECSSSSCEEEEEETTS
T ss_pred cccccccccccCccccccccccccccccccccccccccccccccccccccccc--cccccccccccccceeeeccccccc
Confidence 3 23333333456889999877777766433 33455556553322111111 11123445443 455667665666
Q ss_pred cEEEEcccCC
Q psy6570 182 NILKINKFGN 191 (713)
Q Consensus 182 ~i~~~~~~~~ 191 (713)
.|..++....
T Consensus 170 ~i~i~d~~~~ 179 (311)
T d1nr0a1 170 TVAIFEGPPF 179 (311)
T ss_dssp CEEEEETTTB
T ss_pred cccccccccc
Confidence 6776665443
|
| >d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.08 E-value=8.9e-05 Score=48.53 Aligned_cols=24 Identities=33% Similarity=0.829 Sum_probs=14.9
Q ss_pred CCCCeeecCCCCCeecCCCCccCC
Q psy6570 458 CVNGECSITDSGPKCMCSPGYSGK 481 (713)
Q Consensus 458 ~~~~~C~~~~~~~~C~C~~G~~g~ 481 (713)
|.++.|.|+.|+|.|.|++||.++
T Consensus 13 C~~~~C~Nt~Gsy~C~C~~Gy~~~ 36 (44)
T d1lmja1 13 CGRGQCVNTPGDFECKCDEGYESG 36 (44)
T ss_dssp TTTSCEEEETTEEEECCCSSEEEC
T ss_pred CCCCEeEcCCCCeEEeCCCCCccC
Confidence 445566666666666666666554
|
| >d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Epidermal growth factor, EGF species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.00011 Score=49.23 Aligned_cols=36 Identities=33% Similarity=0.844 Sum_probs=27.8
Q ss_pred CCCCCCCCCCcEEeec--CCCceeeCCCCCcCCCCCcC
Q psy6570 554 KCTPNYCSNNGTCVLI--EGKPSCKCLPPYSGKQCTER 589 (713)
Q Consensus 554 ~C~~~~C~~~~~C~~~--~g~~~C~C~~G~~G~~C~~~ 589 (713)
.|.+++|.++|+|... ..+|+|.|++||+|.+|+..
T Consensus 6 ~c~~~~C~ngG~C~~~~~~~~~~C~C~~gy~G~~Ce~~ 43 (48)
T d1nqlb_ 6 LSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR 43 (48)
T ss_dssp STTCCEECTTCEEEEETTTTEEEEEECTTEESTTSCEE
T ss_pred CCCCCCCCCCcEEeeeCCCCCeEEeCCCCcccCCCCcC
Confidence 4566778888999764 35688999999999988753
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.94 E-value=0.038 Score=53.48 Aligned_cols=179 Identities=11% Similarity=-0.039 Sum_probs=99.9
Q ss_pred CceeEEEccCcc-cEEecC-CCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCce--EEEEEcCCCCCcceEEEcCC
Q psy6570 7 GNVTRVKREMNL-KTVLSN-LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK--KRTLLNTGLNEPYDIALEPL 82 (713)
Q Consensus 7 ~~I~~~~~~~~~-~~~~~~-~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~--~~~l~~~~~~~p~~iavD~~ 82 (713)
+.|...+.+... ..+..+ ......|++.+.++.|.... ..+.|.+.++.... .+..+......+..|++.+.
T Consensus 38 ~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d 113 (311)
T d1nr0a1 38 TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD----VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE 113 (311)
T ss_dssp TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEE----TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT
T ss_pred CEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccc----cCceEeeeeeeccccccccccccccCcccccccccc
Confidence 345555555432 222333 45568889988755554444 46788888876643 22223332356788999986
Q ss_pred CCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCcc
Q psy6570 83 SGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYK 162 (713)
Q Consensus 83 ~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 162 (713)
+.+|+....+....+.+.+++.......+.........|++++.+..++++-...+.|...++............ ...
T Consensus 114 ~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~--~~~ 191 (311)
T d1nr0a1 114 SKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH--TKF 191 (311)
T ss_dssp SCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCC--SSC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccccc--ccc
Confidence 666666543333245555665433322222233456789999877777877666778888887765444333321 112
Q ss_pred ceeeeee-CCeEEEEeCCCCcEEEEcccCC
Q psy6570 163 PYKLEVF-EDNLYFSTYRTNNILKINKFGN 191 (713)
Q Consensus 163 p~~i~~~-~~~ly~td~~~~~i~~~~~~~~ 191 (713)
...+.+. .+.++++-...+.|..++...+
T Consensus 192 i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~ 221 (311)
T d1nr0a1 192 VHSVRYNPDGSLFASTGGDGTIVLYNGVDG 221 (311)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred ccccccCccccccccccccccccccccccc
Confidence 2445553 2334444344566666665443
|
| >d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Thrombomodulin, different EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.87 E-value=0.0002 Score=45.54 Aligned_cols=30 Identities=30% Similarity=0.766 Sum_probs=23.2
Q ss_pred CCCCCC-CCCCCCcEEeecCCCceeeCCCCCcC
Q psy6570 552 ANKCTP-NYCSNNGTCVLIEGKPSCKCLPPYSG 583 (713)
Q Consensus 552 ~~~C~~-~~C~~~~~C~~~~g~~~C~C~~G~~G 583 (713)
++||+. .+|+ ..|+|+.|+|+|.|++||+.
T Consensus 2 idEC~~~~~C~--~~C~N~~Gsy~C~C~~Gy~l 32 (40)
T d1dx5i3 2 IDECENGGFCS--GVCHNLPGTFECICGPDSAL 32 (40)
T ss_dssp CCHHHHCSSCS--SEEEECSSSEEEEECSSSSC
T ss_pred ccccCCCcCcc--CEeeCCCCCeEeECCCCCee
Confidence 456652 4564 58999999999999999974
|
| >d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=0.00025 Score=46.90 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=17.8
Q ss_pred CcEEeecCCCceeeCCCCCc
Q psy6570 563 NGTCVLIEGKPSCKCLPPYS 582 (713)
Q Consensus 563 ~~~C~~~~g~~~C~C~~G~~ 582 (713)
...|+|+.|+|+|.|++||.
T Consensus 15 ~~~C~Nt~Gsy~C~C~~Gy~ 34 (45)
T d1szba2 15 DHHCHNHLGGFYCSCRAGYV 34 (45)
T ss_dssp SSEEEEETTEEEEECCTTEE
T ss_pred CCCCccCCCCeEEECCCCCe
Confidence 56899999999999999996
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.74 E-value=0.017 Score=57.54 Aligned_cols=123 Identities=6% Similarity=-0.189 Sum_probs=81.0
Q ss_pred ceEEEeccCCeEEEeecCC-CCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCC--------CCeEEE
Q psy6570 29 RGVAVDWVGKNLYWTDAGG-RSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGI--------KPRISG 99 (713)
Q Consensus 29 ~gla~D~~~~~ly~td~~~-~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~--------~~~I~~ 99 (713)
..++..+..++.|++.... ....+|++++.++......+..+. .| .+++.|..+.||++.... ...|++
T Consensus 23 ~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~-~~-~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v 100 (368)
T d1mdah_ 23 CDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEV 100 (368)
T ss_dssp BCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEE
T ss_pred cccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC-CC-cceECCCCCEEEEEcccCccccccccCCeEEE
Confidence 3344555667777664321 134568888888766554444332 34 799999888999976421 124778
Q ss_pred EecCCCCcEEEEeC-------CCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEE
Q psy6570 100 ASIDGKNKFNLVDN-------NIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVV 153 (713)
Q Consensus 100 ~~~dG~~~~~l~~~-------~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~ 153 (713)
.++........+.. ....|.+|+|.+++++||+++...+.|..+++........
T Consensus 101 ~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~ 161 (368)
T d1mdah_ 101 FDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQL 161 (368)
T ss_dssp ECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEE
T ss_pred EECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEE
Confidence 87765444333321 2346889999999999999998888999999877654433
|
| >d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.73 E-value=0.0003 Score=46.49 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=17.4
Q ss_pred CcEEeecCCCceeeCCCCCc
Q psy6570 563 NGTCVLIEGKPSCKCLPPYS 582 (713)
Q Consensus 563 ~~~C~~~~g~~~C~C~~G~~ 582 (713)
.+.|+|+.|+|+|.|++||.
T Consensus 15 ~~~C~Nt~gsy~C~C~~Gy~ 34 (45)
T d1nt0a3 15 DHYCHNYLGGYYCSCRVGYI 34 (45)
T ss_dssp SSEEEEETTEEEEECCTTEE
T ss_pred CCEeecCCCCEEEeCCCCCE
Confidence 45899999999999999996
|
| >d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.00036 Score=45.01 Aligned_cols=28 Identities=32% Similarity=0.852 Sum_probs=20.4
Q ss_pred CCCCC-CCCCCCcEEeecCCCceeeCCCCCc
Q psy6570 553 NKCTP-NYCSNNGTCVLIEGKPSCKCLPPYS 582 (713)
Q Consensus 553 ~~C~~-~~C~~~~~C~~~~g~~~C~C~~G~~ 582 (713)
|+|+. ++|+ ..|+|+.|+|+|.|++||+
T Consensus 2 dEC~~~~~C~--~~C~n~~Gsy~C~C~~Gy~ 30 (41)
T d1i0ua2 2 DECQDPDTCS--QLCVNLEGGYKCQCEEGFQ 30 (41)
T ss_dssp CTTTTTTSCS--SCEECSSSCCEECCCTTEE
T ss_pred ccCCCCCCCC--CEeECCCCCEEeECCCCCe
Confidence 45642 3453 4788888889999998887
|
| >d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement protease C1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.68 E-value=0.00051 Score=47.28 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=18.4
Q ss_pred CCcEEeecCCCceeeCCCCCc
Q psy6570 562 NNGTCVLIEGKPSCKCLPPYS 582 (713)
Q Consensus 562 ~~~~C~~~~g~~~C~C~~G~~ 582 (713)
....|+|++|+|+|.|++||+
T Consensus 22 c~~~C~Nt~GsY~C~C~~Gy~ 42 (53)
T d1apqa_ 22 CQHLCHNYVGGYFCSCRPGYE 42 (53)
T ss_dssp TSSEEEEETTEEEEECSTTCE
T ss_pred ccCEeEcCCCCeEeECCCCCe
Confidence 345899999999999999997
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.62 E-value=0.2 Score=46.38 Aligned_cols=144 Identities=12% Similarity=0.027 Sum_probs=85.7
Q ss_pred ceeEEEccCcc-cEEecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcE
Q psy6570 8 NVTRVKREMNL-KTVLSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRM 86 (713)
Q Consensus 8 ~I~~~~~~~~~-~~~~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~l 86 (713)
+|+.++.+|.. +.+..........++-|.+++|.++.... ....+++.++++...+.+... ..........|....|
T Consensus 20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~i 97 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVRQVASF-PRHNGAPAFSPDGSKL 97 (269)
T ss_dssp EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEEEEECC-SSCEEEEEECTTSSEE
T ss_pred EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeec-cCcceeeeecccCceeEEeee-ecccccceecCCCCee
Confidence 48899999854 45555555556788999999987664421 455788889888877766643 3667778888776666
Q ss_pred EEEccCC-CCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcC--CCCcEEEEeCCCCceeEEE
Q psy6570 87 FWTELGI-KPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADP--KARTIESINLNGKDRFVVY 154 (713)
Q Consensus 87 y~td~~~-~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~--~~~~I~~~~~~g~~~~~~~ 154 (713)
++..... ...+............+ ...........+....+.++++.. +...|+..++++.....+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~ 167 (269)
T d2hqsa1 98 AFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT 167 (269)
T ss_dssp EEEECTTSSCEEEEEETTTCCEEEC-CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC
T ss_pred eEeeecCCccceeecccccccceee-eeccccccccccccccccceecccccCCceEeeeecccccceeee
Confidence 6544332 22333333332222222 222222333445555666666643 4457888888887655443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.54 E-value=0.04 Score=53.77 Aligned_cols=114 Identities=10% Similarity=0.045 Sum_probs=72.3
Q ss_pred EeccCCeEEEeecCC-CCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCC--------CCeEEEEecC
Q psy6570 33 VDWVGKNLYWTDAGG-RSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGI--------KPRISGASID 103 (713)
Q Consensus 33 ~D~~~~~ly~td~~~-~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~--------~~~I~~~~~d 103 (713)
.-+.+.+||+++... .....|++++.+.......+..+ ..| +|++.|..++||+++... ...|.+.++.
T Consensus 9 ~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g-~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~ 86 (355)
T d2bbkh_ 9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-FLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 86 (355)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred eCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC-CCC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECC
Confidence 346788999987521 12456999998765433333332 234 799999999999986421 1257777776
Q ss_pred CCCcEEEEe-C------CCCCCeeEEEeCCCCeEEEEcCCC-CcEEEEeCCCC
Q psy6570 104 GKNKFNLVD-N------NIQWPTGITIDYPSQRLYWADPKA-RTIESINLNGK 148 (713)
Q Consensus 104 G~~~~~l~~-~------~~~~p~glavd~~~~~LY~~d~~~-~~I~~~~~~g~ 148 (713)
.......+. . ....|.++++++.+++||++.... ..+...+....
T Consensus 87 t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~ 139 (355)
T d2bbkh_ 87 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK 139 (355)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred CCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCC
Confidence 544433332 1 134688999999999999988544 44555665443
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.38 E-value=0.22 Score=48.06 Aligned_cols=176 Identities=11% Similarity=0.038 Sum_probs=98.9
Q ss_pred CCceeEEEccCcccEE----ecCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcC
Q psy6570 6 SGNVTRVKREMNLKTV----LSNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEP 81 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~----~~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~ 81 (713)
++.|...++......+ .........+++.+.+..|+ +-. ....|...++..................|++.+
T Consensus 118 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~---~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 193 (337)
T d1gxra_ 118 ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCF-SCC---SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193 (337)
T ss_dssp SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEE-EEE---TTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred cccccccccccccccccccccccccccccccccccccccc-ccc---ccccccccccccccccccccccccccccccccc
Confidence 4556666655432211 12233345677776555554 434 467888888876655544443345677899987
Q ss_pred CCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCc
Q psy6570 82 LSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGY 161 (713)
Q Consensus 82 ~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~ 161 (713)
....|++.... . .|...++.......... .......|++++.+..|+.+. ..+.|...+++.......... ..
T Consensus 194 ~~~~~~~~~~d-~-~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~---~~ 266 (337)
T d1gxra_ 194 DGTKLWTGGLD-N-TVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKYQLHLH---ES 266 (337)
T ss_dssp TSSEEEEEETT-S-EEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEEEECCC---SS
T ss_pred ccccccccccc-c-cccccccccceeecccc-cccceEEEEEcccccccceec-ccccccccccccccccccccc---cc
Confidence 66666665432 3 67777765433322222 234567899998777776654 456788888876655433222 12
Q ss_pred cceeeeee-CCeEEEEeCCCCcEEEEcccCCC
Q psy6570 162 KPYKLEVF-EDNLYFSTYRTNNILKINKFGNS 192 (713)
Q Consensus 162 ~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~ 192 (713)
....+++. .+.++++-...+.|..++...+.
T Consensus 267 ~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~ 298 (337)
T d1gxra_ 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred ccceEEECCCCCEEEEEeCCCeEEEEECCCCC
Confidence 23455554 33445554455667666654443
|
| >d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Betacellulin-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.00083 Score=45.09 Aligned_cols=33 Identities=33% Similarity=0.931 Sum_probs=26.9
Q ss_pred CCCCCCCeecCCCCccCCCCCceeeCCCCcccCCCCcc
Q psy6570 634 HFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTL 671 (713)
Q Consensus 634 ~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~~ 671 (713)
+.|.+++.|.. .....+.|.|+.||+|.+||..
T Consensus 14 ~yC~nGgcc~~-----~~~~~~~C~C~~gy~G~rCe~~ 46 (50)
T d1ioxa_ 14 HYCIKGRCRFV-----VAEQTPSCVCDEGYIGARCERV 46 (50)
T ss_dssp TSCTTCCEEEE-----TTTTEEEECCCTTEETTTTCEE
T ss_pred CCccCCeEEEe-----CCCCCcEeECCCCCeeCCCccc
Confidence 67899888865 3444589999999999999874
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.30 E-value=0.19 Score=48.55 Aligned_cols=169 Identities=7% Similarity=0.053 Sum_probs=93.6
Q ss_pred CCceeEEEccCcccEE-ec-CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCC
Q psy6570 6 SGNVTRVKREMNLKTV-LS-NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLS 83 (713)
Q Consensus 6 ~~~I~~~~~~~~~~~~-~~-~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~ 83 (713)
.+.|...++.+..... .. .......|++.+.+..|++... .+.|.+.++........... ...+..|+++|..
T Consensus 162 d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~----d~~v~i~d~~~~~~~~~~~~-~~~i~~l~~~~~~ 236 (337)
T d1gxra_ 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQLQQHDF-TSQIFSLGYCPTG 236 (337)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEEC-SSCEEEEEECTTS
T ss_pred cccccccccccccccccccccccccccccccccccccccccc----cccccccccccceeeccccc-ccceEEEEEcccc
Confidence 4456666655433222 22 2344567888877777766654 57888888765433322222 3567889999876
Q ss_pred CcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccc
Q psy6570 84 GRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKP 163 (713)
Q Consensus 84 ~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p 163 (713)
..|+..... . .|...+++........ ........|++++.+.+|+.+ ...+.|...++........... ....
T Consensus 237 ~~l~~~~~d-~-~i~i~d~~~~~~~~~~-~~~~~i~~v~~s~~g~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~---~~~v 309 (337)
T d1gxra_ 237 EWLAVGMES-S-NVEVLHVNKPDKYQLH-LHESCVLSLKFAYCGKWFVST-GKDNLLNAWRTPYGASIFQSKE---SSSV 309 (337)
T ss_dssp SEEEEEETT-S-CEEEEETTSSCEEEEC-CCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCEEEEEEC---SSCE
T ss_pred cccceeccc-c-cccccccccccccccc-ccccccceEEECCCCCEEEEE-eCCCeEEEEECCCCCEEEEccC---CCCE
Confidence 666655433 3 6788888766544332 233456889999766655544 3456787777654433222222 2233
Q ss_pred eeeeee-CCeEEEEeCCCCcEEEE
Q psy6570 164 YKLEVF-EDNLYFSTYRTNNILKI 186 (713)
Q Consensus 164 ~~i~~~-~~~ly~td~~~~~i~~~ 186 (713)
..+++. .+.++++-...+.|...
T Consensus 310 ~~~~~s~d~~~l~t~s~D~~I~vW 333 (337)
T d1gxra_ 310 LSCDISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEE
Confidence 455554 23333333344445443
|
| >d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.26 E-value=0.00077 Score=45.41 Aligned_cols=29 Identities=14% Similarity=0.270 Sum_probs=24.0
Q ss_pred CCeeeccCCCceeeeCCCCccccccCCCCCc
Q psy6570 231 SALCINLPSSHTCLCPDHLTEELNVTSGKMS 261 (713)
Q Consensus 231 ~~~C~~~~g~~~C~C~~G~~~~~~~~~~~c~ 261 (713)
.++|++++++|+|.|++||+ +..+..+|+
T Consensus 10 ~~~C~~~~g~~~C~C~~Gy~--L~~D~~tC~ 38 (50)
T d1autl2 10 THYCLEEVGWRRCSCAPGYK--LGDDLLQCH 38 (50)
T ss_dssp SSEEEECSSSEEEECCTTEE--ECTTSSCEE
T ss_pred ccEeecCCCCeEEECCCCCE--ECCCCCccc
Confidence 89999999999999999998 344555554
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.21 E-value=0.076 Score=52.64 Aligned_cols=156 Identities=10% Similarity=0.019 Sum_probs=93.3
Q ss_pred CCCCCceEEEec---cCCeEEEeecCCCCCCeEEEEecCCceEEEEEc-CCCCCcceEEEcCCCCcEEEEccCCC-----
Q psy6570 24 NLHDPRGVAVDW---VGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLN-TGLNEPYDIALEPLSGRMFWTELGIK----- 94 (713)
Q Consensus 24 ~~~~p~gla~D~---~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~-~~~~~p~~iavD~~~~~ly~td~~~~----- 94 (713)
.+.+| .|.+-- .++.||+.|. .+.||.|++++.-....++. .....++++.+.+..+..|+...+..
T Consensus 84 D~HHP-~~S~TdGtyDGrylFVNDk---an~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~p 159 (459)
T d1fwxa2 84 DLHHV-HMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLV 159 (459)
T ss_dssp CBCCE-EEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESS
T ss_pred CcCCC-cccccCCccceeEEEEEcC---CCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccC
Confidence 45556 344332 4678999998 89999999999877655544 34678999988766666777643221
Q ss_pred -------------CeEEEEecCCCCcEEEEeCC-CCCCeeEEEeCCCCeEEEEcCCCC--------------cEEEEe--
Q psy6570 95 -------------PRISGASIDGKNKFNLVDNN-IQWPTGITIDYPSQRLYWADPKAR--------------TIESIN-- 144 (713)
Q Consensus 95 -------------~~I~~~~~dG~~~~~l~~~~-~~~p~glavd~~~~~LY~~d~~~~--------------~I~~~~-- 144 (713)
+.+..+ |....++...-. -..|.+++++++++++|++...+. .|..++
T Consensus 160 ndg~~l~d~~~y~~~~t~I--D~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~ 237 (459)
T d1fwxa2 160 NDGTNMEDVANYVNVFTAV--DADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA 237 (459)
T ss_dssp CSSSSTTCGG-EEEEEEEE--ETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH
T ss_pred CCCccccchhhcceEEEEE--ecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechH
Confidence 012233 333443332211 235789999999999999864322 122222
Q ss_pred ---------------------CC---CCceeEEEecCCCCccceeeee--eCCeEEEEeCCCCcEEEEcc
Q psy6570 145 ---------------------LN---GKDRFVVYHTEDNGYKPYKLEV--FEDNLYFSTYRTNNILKINK 188 (713)
Q Consensus 145 ---------------------~~---g~~~~~~~~~~~~~~~p~~i~~--~~~~ly~td~~~~~i~~~~~ 188 (713)
.. +......+.. ...|.|+++ ++.+||++......|..++.
T Consensus 238 rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPV---pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~ 304 (459)
T d1fwxa2 238 EIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDV 304 (459)
T ss_dssp HHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEE---ESSCCCEEECTTSSEEEEECTTSSBEEEEEG
T ss_pred HhHHhhhcCCcEEeCCceeecccccCCcceeEEEec---CCCCCceEECCCCCEEEEeCCcCCcEEEEEe
Confidence 11 1111111111 235667766 47799999988888888874
|
| >d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Epiregulin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.0013 Score=43.14 Aligned_cols=33 Identities=36% Similarity=0.901 Sum_probs=25.2
Q ss_pred CCCCCCCeecCCCCccCCCCCceeeCCCCcccCCCCcc
Q psy6570 634 HFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTL 671 (713)
Q Consensus 634 ~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~~ 671 (713)
++|.+ |.|.. +.....+.|.|++||+|++|+..
T Consensus 12 ~yC~n-G~C~~----~~~~~~~~C~C~~gY~G~RCe~~ 44 (46)
T d1k36a_ 12 GYCLH-GQCIY----LVDMSQNYCRCEVGYTGVRCEHF 44 (46)
T ss_dssp SSCSS-EEEEE----ETTTTEEEEEECTTCSSTTSCCC
T ss_pred CcCcC-CEEEE----eCCCCccEeECCCCceecCceee
Confidence 67888 67754 12344589999999999999874
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.18 E-value=0.047 Score=53.14 Aligned_cols=124 Identities=6% Similarity=-0.029 Sum_probs=77.5
Q ss_pred CCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCe
Q psy6570 50 SNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQR 129 (713)
Q Consensus 50 ~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~ 129 (713)
.++|++.++++...+.+. . -..+..+++.|..++|+++.......|+..++++...+.+. ........+++++++.+
T Consensus 23 ~g~v~v~d~~~~~~~~~~-~-~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~-~~~~~v~~~~~spdg~~ 99 (360)
T d1k32a3 23 RGQAFIQDVSGTYVLKVP-E-PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKF 99 (360)
T ss_dssp TTEEEEECTTSSBEEECS-C-CSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSE
T ss_pred CCeEEEEECCCCcEEEcc-C-CCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee-CCCceEEeeeecccccc
Confidence 356777777776655443 2 35688999999777887765443326778888776555443 34556789999988777
Q ss_pred EEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeeeCCeEEEEe
Q psy6570 130 LYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVFEDNLYFST 177 (713)
Q Consensus 130 LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~~~~ly~td 177 (713)
|.... ..+.|+..++++.....+.........-..+..++.+|.++.
T Consensus 100 l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~ 146 (360)
T d1k32a3 100 AVVAN-DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGF 146 (360)
T ss_dssp EEEEE-TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEE
T ss_pred cceec-cccccccccccccceeeeeecccccccchhhccceeeeeeec
Confidence 77665 456688888877766555543221222223333455665543
|
| >d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Transforming growth factor alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.05 E-value=0.0011 Score=44.30 Aligned_cols=33 Identities=39% Similarity=0.936 Sum_probs=26.3
Q ss_pred CCCCCCCeecCCCCccCCCCCceeeCCCCcccCCCCcc
Q psy6570 634 HFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTL 671 (713)
Q Consensus 634 ~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~~ 671 (713)
+.|.|++.|.. .....+.|.|++||+|.+||..
T Consensus 13 ~yClnGgcc~~-----~~~~~~~C~C~~gy~G~RCe~~ 45 (49)
T d1moxc_ 13 QFCFHGTCRFL-----VQEDKPACVCHSGYVGARCEHA 45 (49)
T ss_dssp CSSTTEEEEEE-----TTTTEEEEEECTTEESTTSCEE
T ss_pred CEeeCCeEEec-----CCCCCcEeECCCCCEecCCccc
Confidence 67898888854 3344589999999999999864
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.05 E-value=0.08 Score=51.75 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=79.5
Q ss_pred ecCCCCCceEEE--eccCCeEEEeecCCCCCCeEEE--EecC--CceEEEEEc--CCCCCcceEEEcCCCCcEEEEccCC
Q psy6570 22 LSNLHDPRGVAV--DWVGKNLYWTDAGGRSSNNIMV--STLE--GRKKRTLLN--TGLNEPYDIALEPLSGRMFWTELGI 93 (713)
Q Consensus 22 ~~~~~~p~gla~--D~~~~~ly~td~~~~~~~~I~~--~~~~--G~~~~~l~~--~~~~~p~~iavD~~~~~ly~td~~~ 93 (713)
...+..|.||++ ++.++.+|..-.. ..+++.. +..+ |.....+++ ..-.++.|+++|..++.||+++..
T Consensus 124 ~~~~~~vYGlc~y~~~~~g~~~afv~~--k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~- 200 (353)
T d1h6la_ 124 ASAIDEVYGFSLYHSQKTGKYYAMVTG--KEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEED- 200 (353)
T ss_dssp ECSSSSCCCEEEEECTTTCCEEEEEEC--SSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETT-
T ss_pred ccccCcceEEEEEecCCCCeEEEEEEc--CCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCc-
Confidence 345667899998 7777765543321 2445544 3333 333223322 123679999999999999999864
Q ss_pred CCeEEEEecC---CCCcEEEEeC---C-CCCCeeEEEeCC---CCeEEEEcCCCCcEEEEeCCCC
Q psy6570 94 KPRISGASID---GKNKFNLVDN---N-IQWPTGITIDYP---SQRLYWADPKARTIESINLNGK 148 (713)
Q Consensus 94 ~~~I~~~~~d---G~~~~~l~~~---~-~~~p~glavd~~---~~~LY~~d~~~~~I~~~~~~g~ 148 (713)
. .||+++++ +...+.+... . ..-|.||||-.. +++|.+++.+.++...++..+.
T Consensus 201 ~-Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 201 E-AIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp T-EEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred c-ceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 3 68988775 3333444332 1 346899998643 4589999988888888887664
|
| >d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.0017 Score=38.56 Aligned_cols=28 Identities=36% Similarity=0.841 Sum_probs=19.7
Q ss_pred CCC-CCCCCCCcEEeecCCCceeeCCCCCc
Q psy6570 554 KCT-PNYCSNNGTCVLIEGKPSCKCLPPYS 582 (713)
Q Consensus 554 ~C~-~~~C~~~~~C~~~~g~~~C~C~~G~~ 582 (713)
+|+ .++|. +|+|.|..|.+.|.|..||.
T Consensus 3 ECsignpCG-nGTCtNviGgFec~C~~GFe 31 (39)
T d1emoa2 3 ECSVGNPCG-NGTCKNVIGGFECTCEEGFE 31 (39)
T ss_dssp GGGTTCSSS-SSCEEECSSSEEECCSSSSC
T ss_pred ccccCCccC-CceeeecccceEEeecCCcC
Confidence 444 34563 57788888888888888875
|
| >d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.97 E-value=0.0015 Score=41.62 Aligned_cols=28 Identities=29% Similarity=0.584 Sum_probs=21.7
Q ss_pred CCCCCC--CCCCCcEEeecCCCceeeCCCCCc
Q psy6570 553 NKCTPN--YCSNNGTCVLIEGKPSCKCLPPYS 582 (713)
Q Consensus 553 ~~C~~~--~C~~~~~C~~~~g~~~C~C~~G~~ 582 (713)
++|..+ .|+ ..|++++|+|+|.|++||.
T Consensus 3 neC~~~nggC~--h~C~n~~g~~~C~C~~Gy~ 32 (40)
T d3bpse1 3 NECLDNNGGCS--HVCNDLKIGYECLCPDGFQ 32 (40)
T ss_dssp CGGGTGGGGCS--SEEEECSSSEEEECCTTCC
T ss_pred ccCCCCCCCCc--CEEEcCCCCEEEECCCCCE
Confidence 566543 353 4899999999999999996
|
| >d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.96 E-value=0.0018 Score=43.54 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=23.6
Q ss_pred cCCCCCCCCCCCCeeeccC------CCceeeeCCCCcc
Q psy6570 220 TNHCDDKPCHQSALCINLP------SSHTCLCPDHLTE 251 (713)
Q Consensus 220 ~~~C~~~~C~~~~~C~~~~------g~~~C~C~~G~~~ 251 (713)
-|+|+.+..+-+++|+..| ++|+|.|++||..
T Consensus 4 cneC~~~NGGC~h~Cl~~p~~~n~~~~y~C~C~~G~~L 41 (50)
T d1ijqa2 4 CERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLL 41 (50)
T ss_dssp TSSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEE
T ss_pred ccccCCCCCCCcCccCCCcCcccCCCCEEEeCCCCCEE
Confidence 3567665433399998544 6899999999983
|
| >d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Plasminogen activator (urokinase-type) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.93 E-value=0.0031 Score=37.82 Aligned_cols=36 Identities=33% Similarity=0.774 Sum_probs=26.5
Q ss_pred CCCCCCeecCCCCccCCCCCceeeCCCCcccCCCCcccc
Q psy6570 635 FCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQTLVH 673 (713)
Q Consensus 635 ~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~~~~ 673 (713)
.|.|+|+|+..-. -..-.+|.||.+|.|.+||.+..
T Consensus 3 ~ClNGG~Cvsyk~---FS~I~rC~CPk~f~G~HCEiDt~ 38 (40)
T d2i9aa1 3 DCLNGGTCVSNKY---FSNIHWCNCPKKFGGQHCEIDKS 38 (40)
T ss_dssp CCCTTCEEEECSS---STTCEEEECCTTEESTTSCEESS
T ss_pred ccccCCEEEEEeh---hcCCEEecCCcccCceeEEeccc
Confidence 3788999987321 12225899999999999997653
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.92 E-value=0.52 Score=45.98 Aligned_cols=135 Identities=16% Similarity=0.038 Sum_probs=75.4
Q ss_pred cCCceeEEEccCcc-cEE--ecC-CCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEE-EEEcCC-CCCcceEE
Q psy6570 5 SSGNVTRVKREMNL-KTV--LSN-LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKR-TLLNTG-LNEPYDIA 78 (713)
Q Consensus 5 ~~~~I~~~~~~~~~-~~~--~~~-~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~-~l~~~~-~~~p~~ia 78 (713)
.++.|...++.+.. +.+ +.+ ......|++.+.++.|. +-. ..+.|.+.+++....+ .+.... ...+..|+
T Consensus 27 ~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~-s~s---~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~ 102 (371)
T d1k8kc_ 27 NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV-TCG---TDRNAYVWTLKGRTWKPTLVILRINRAARCVR 102 (371)
T ss_dssp SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEE-EEE---TTSCEEEEEEETTEEEEEEECCCCSSCEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEE-EEE---CCCeEEEEeecccccccccccccccccccccc
Confidence 35667777776543 222 232 34468899998766555 433 4567888888755433 333222 34578899
Q ss_pred EcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEe---CC-CCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCC
Q psy6570 79 LEPLSGRMFWTELGIKPRISGASIDGKNKFNLVD---NN-IQWPTGITIDYPSQRLYWADPKARTIESINLN 146 (713)
Q Consensus 79 vD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~---~~-~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~ 146 (713)
++|....|+..... . .|...+++......... .. ......++++|.+..|..+ ...+.|...++.
T Consensus 103 ~~p~~~~l~~~s~d-~-~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~-s~D~~v~v~~~~ 171 (371)
T d1k8kc_ 103 WAPNEKKFAVGSGS-R-VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG-SCDFKCRIFSAY 171 (371)
T ss_dssp ECTTSSEEEEEETT-S-SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE-ETTSCEEEEECC
T ss_pred cccccccceeeccc-C-cceeeeeecccccccccccccccccccccccccccccceecc-ccCcEEEEEeec
Confidence 99876666665433 2 45555554443332221 11 2245678898766555444 344556555543
|
| >d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.85 E-value=0.001 Score=44.98 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=24.0
Q ss_pred CCeeeccCCCceeeeCCCCccccccCCCCCc
Q psy6570 231 SALCINLPSSHTCLCPDHLTEELNVTSGKMS 261 (713)
Q Consensus 231 ~~~C~~~~g~~~C~C~~G~~~~~~~~~~~c~ 261 (713)
.++|++++++|+|.|++||. +..+..+|+
T Consensus 11 ~h~C~n~~g~~~C~C~~Gy~--L~~D~~tC~ 39 (51)
T d2p3ua1 11 DQFCHEEQNSVVCSCARGYT--LADNGKACI 39 (51)
T ss_dssp SSEEEEETTEEEEECCTTEE--ECTTSSCEE
T ss_pred ccEeecCCCCeEeEcCCCCE--ECCCCCccc
Confidence 89999999999999999998 334555554
|
| >d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.78 E-value=0.0015 Score=44.22 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=23.5
Q ss_pred CCeeeccCCCceeeeCCCCccccccCCCCCc
Q psy6570 231 SALCINLPSSHTCLCPDHLTEELNVTSGKMS 261 (713)
Q Consensus 231 ~~~C~~~~g~~~C~C~~G~~~~~~~~~~~c~ 261 (713)
.++|++++++|+|.|++||. +..+..+|+
T Consensus 9 ~h~C~~~~~~~~C~C~~Gy~--L~~D~~tC~ 37 (51)
T d1kigl_ 9 DQFCREERSEVRCSCAHGYV--LGDDSKSCV 37 (51)
T ss_dssp SSCCCEETTEECCCCCTTEE--ECTTSSCEE
T ss_pred ccEeEcCCCcEEeEcCCCCE--ECCCCCccc
Confidence 89999999999999999998 334445554
|
| >d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement C1S component species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.72 E-value=0.0035 Score=40.30 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=18.4
Q ss_pred CCCCCcEEeecCCCceeeCCCCCc
Q psy6570 559 YCSNNGTCVLIEGKPSCKCLPPYS 582 (713)
Q Consensus 559 ~C~~~~~C~~~~g~~~C~C~~G~~ 582 (713)
.|+ ..|+++.|+|+|.|++||.
T Consensus 10 ~C~--~~C~n~~Gsy~C~C~~Gy~ 31 (42)
T d1nzia2 10 PCS--HFCNNFIGGYFCSCPPEYF 31 (42)
T ss_dssp CSS--SEEEEETTEEEEECCTTCE
T ss_pred CCC--CEeecCCCCEEEeCCCCCE
Confidence 464 4899999999999999996
|
| >d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Epiregulin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.69 E-value=0.0022 Score=42.05 Aligned_cols=30 Identities=33% Similarity=0.783 Sum_probs=17.2
Q ss_pred CCCCCeeec-CCCCCCeeecCCCcccCCccc
Q psy6570 315 DCNHGTCEF-DDDFDPHCICQENFYGTYCEK 344 (713)
Q Consensus 315 ~C~~~~C~~-~~~~~~~C~C~~g~~G~~C~~ 344 (713)
.|.||.|.. .+...+.|.|++||+|..|+.
T Consensus 13 yC~nG~C~~~~~~~~~~C~C~~gY~G~RCe~ 43 (46)
T d1k36a_ 13 YCLHGQCIYLVDMSQNYCRCEVGYTGVRCEH 43 (46)
T ss_dssp SCSSEEEEEETTTTEEEEEECTTCSSTTSCC
T ss_pred cCcCCEEEEeCCCCccEeECCCCceecCcee
Confidence 466665543 333345666666666666653
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.45 E-value=0.32 Score=44.96 Aligned_cols=97 Identities=9% Similarity=0.060 Sum_probs=66.4
Q ss_pred CCeEEEeecCCC-CCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEE-ccCCCCeEEEEecCCCCcEEEEeCC
Q psy6570 37 GKNLYWTDAGGR-SSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWT-ELGIKPRISGASIDGKNKFNLVDNN 114 (713)
Q Consensus 37 ~~~ly~td~~~~-~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~t-d~~~~~~I~~~~~dG~~~~~l~~~~ 114 (713)
++..|+++.... ....|++++.||+..+.|.... ......+..|...+|.|+ +......++...+++..++.+.. .
T Consensus 4 ~~iay~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~-~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~-~ 81 (269)
T d2hqsa1 4 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP-QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-F 81 (269)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEES-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC-C
T ss_pred CeEEEEEEeCCCCceEEEEEEcCCCCCcEEEecCC-CceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEee-e
Confidence 344577776321 1226999999999988887543 344567888888888665 43344578888888887766654 4
Q ss_pred CCCCeeEEEeCCCCeEEEEcC
Q psy6570 115 IQWPTGITIDYPSQRLYWADP 135 (713)
Q Consensus 115 ~~~p~glavd~~~~~LY~~d~ 135 (713)
........+++++.+|++...
T Consensus 82 ~~~~~~~~~spdg~~i~~~~~ 102 (269)
T d2hqsa1 82 PRHNGAPAFSPDGSKLAFALS 102 (269)
T ss_dssp SSCEEEEEECTTSSEEEEEEC
T ss_pred ecccccceecCCCCeeeEeee
Confidence 456678888988887776554
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.32 E-value=1.1 Score=42.46 Aligned_cols=166 Identities=7% Similarity=-0.049 Sum_probs=88.8
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCc
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNK 107 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~ 107 (713)
...|++.+.+..|..+-.+ ....+.+.+.+.......+.........+++.+....++++-.... .|...++.....
T Consensus 118 v~~v~~s~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~-~v~~~d~~~~~~ 194 (325)
T d1pgua1 118 ISDISWDFEGRRLCVVGEG--RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG-SVVFYQGPPFKF 194 (325)
T ss_dssp EEEEEECTTSSEEEEEECC--SSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTT-EEEEEETTTBEE
T ss_pred EEEEEECCCCCccceeecc--ccceEEEEeecccccceeeeecccccccccccccccceEEEeeccc-cccccccccccc
Confidence 3567777766666654431 3455666666643322223222345678999987777666554333 566655543222
Q ss_pred EEEEeC---CCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCcc--ceeeeeeCCeEEEEeCCCCc
Q psy6570 108 FNLVDN---NIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYK--PYKLEVFEDNLYFSTYRTNN 182 (713)
Q Consensus 108 ~~l~~~---~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~--p~~i~~~~~~ly~td~~~~~ 182 (713)
..-... .......|+++|+.+.++++-...+.|...++.-......+........ .++++..++.++++-...+.
T Consensus 195 ~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~ 274 (325)
T d1pgua1 195 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT 274 (325)
T ss_dssp EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE
T ss_pred ceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCe
Confidence 222211 1234578999987777777766677788887654332222221111111 12333334555566556677
Q ss_pred EEEEcccCCCccee
Q psy6570 183 ILKINKFGNSDFNV 196 (713)
Q Consensus 183 i~~~~~~~~~~~~~ 196 (713)
|...+...+.....
T Consensus 275 i~iwd~~~~~~~~~ 288 (325)
T d1pgua1 275 IRVWDVTTSKCVQK 288 (325)
T ss_dssp EEEEETTTTEEEEE
T ss_pred EEEEECCCCCEEEE
Confidence 77777655544333
|
| >d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Betacellulin-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.20 E-value=0.007 Score=40.43 Aligned_cols=33 Identities=24% Similarity=0.643 Sum_probs=25.2
Q ss_pred CCCCCCCCeEecCCCCcceeecCCCcccCCCCc
Q psy6570 596 HNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSE 628 (713)
Q Consensus 596 ~~~C~~~g~C~~~~~g~~~C~C~~G~~G~~C~~ 628 (713)
.+.|.+++.|.....+.+.|.|+.||+|..|+.
T Consensus 13 ~~yC~nGgcc~~~~~~~~~C~C~~gy~G~rCe~ 45 (50)
T d1ioxa_ 13 KHYCIKGRCRFVVAEQTPSCVCDEGYIGARCER 45 (50)
T ss_dssp TTSCTTCCEEEETTTTEEEECCCTTEETTTTCE
T ss_pred CCCccCCeEEEeCCCCCcEeECCCCCeeCCCcc
Confidence 356778777765555778899999999988875
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.08 E-value=0.69 Score=45.05 Aligned_cols=155 Identities=10% Similarity=0.027 Sum_probs=84.2
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEE--EEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCC
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKR--TLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGK 105 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~--~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~ 105 (713)
...+++++.+..|..+ . ..+.|.+.++++...+ ..+..-......|++.|..++|.-.... . .|..-+++..
T Consensus 10 It~~~~s~dg~~la~~-~---~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D-~-~i~vWd~~~~ 83 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAIC-P---NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-R-NAYVWTLKGR 83 (371)
T ss_dssp CCEEEECTTSSEEEEE-C---SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-S-CEEEEEEETT
T ss_pred eEEEEECCCCCEEEEE-e---CCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECC-C-eEEEEeeccc
Confidence 4889999876666544 3 4578888888765422 2222223557899999866555544332 2 5666666654
Q ss_pred CcE-EEEe-CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCcee-EEEecCC-CCccceeeeee-CCeEEEEeCCC
Q psy6570 106 NKF-NLVD-NNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRF-VVYHTED-NGYKPYKLEVF-EDNLYFSTYRT 180 (713)
Q Consensus 106 ~~~-~l~~-~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~-~~~~~~~-~~~~p~~i~~~-~~~ly~td~~~ 180 (713)
..+ ++.. ........|++++.+..|+... ..+.|...+++..... .+..... .......+++. ++.++.+-...
T Consensus 84 ~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D 162 (371)
T d1k8kc_ 84 TWKPTLVILRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 162 (371)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccccccccccccccccccccccccceeec-ccCcceeeeeecccccccccccccccccccccccccccccceeccccC
Confidence 433 2222 2234578899998777777665 3444555444433222 2221111 11223455554 34445554455
Q ss_pred CcEEEEccc
Q psy6570 181 NNILKINKF 189 (713)
Q Consensus 181 ~~i~~~~~~ 189 (713)
+.|..++..
T Consensus 163 ~~v~v~~~~ 171 (371)
T d1k8kc_ 163 FKCRIFSAY 171 (371)
T ss_dssp SCEEEEECC
T ss_pred cEEEEEeec
Confidence 666655543
|
| >d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Plasminogen activator (urokinase-type) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.99 E-value=0.0078 Score=36.05 Aligned_cols=26 Identities=46% Similarity=1.221 Sum_probs=15.3
Q ss_pred CCCCCEEEc-----CCCeeeCCCCCccCCCC
Q psy6570 391 CHNGGTCIA-----TTQTCVCPPGFTGDTCQ 416 (713)
Q Consensus 391 C~~~~~C~~-----~~~~C~C~~g~~g~~C~ 416 (713)
|.++|+|+. .-..|.||.+|.|..||
T Consensus 4 ClNGG~Cvsyk~FS~I~rC~CPk~f~G~HCE 34 (40)
T d2i9aa1 4 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCE 34 (40)
T ss_dssp CCTTCEEEECSSSTTCEEEECCTTEESTTSC
T ss_pred cccCCEEEEEehhcCCEEecCCcccCceeEE
Confidence 556666665 23356666666666655
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.98 E-value=1.1 Score=42.54 Aligned_cols=157 Identities=10% Similarity=-0.038 Sum_probs=79.7
Q ss_pred CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcC--C-CCCcceEEEcCCCCcEEEEccCCCCeEEEEecC
Q psy6570 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNT--G-LNEPYDIALEPLSGRMFWTELGIKPRISGASID 103 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~--~-~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~d 103 (713)
....+++.+.+..++++-. ..+.|...++........... . ......|++.|..+.++++-.... .|...++.
T Consensus 161 ~v~~~~~~~~~~~~~~~~~---~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~-~i~iwd~~ 236 (325)
T d1pgua1 161 RINACHLKQSRPMRSMTVG---DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR-KISCFDGK 236 (325)
T ss_dssp CEEEEEECSSSSCEEEEEE---TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC-CEEEEETT
T ss_pred ccccccccccccceEEEee---cccccccccccccccceecccccCCCCccEEeeeccccceecccccccc-ceeeeeec
Confidence 3466888877666666655 467777777654332222211 1 234678999987777777654444 67777765
Q ss_pred CCCcEEEEeCCCCCCeeEEEe--CCCCeEEEEcCCCCcEEEEeCCCCce-eEEEecCC-CCccceeeeeeCCeEEEEeCC
Q psy6570 104 GKNKFNLVDNNIQWPTGITID--YPSQRLYWADPKARTIESINLNGKDR-FVVYHTED-NGYKPYKLEVFEDNLYFSTYR 179 (713)
Q Consensus 104 G~~~~~l~~~~~~~p~glavd--~~~~~LY~~d~~~~~I~~~~~~g~~~-~~~~~~~~-~~~~p~~i~~~~~~ly~td~~ 179 (713)
.......+........++.+. ...++++++-...+.|...++..... ..+..... ......++....+..+++-..
T Consensus 237 ~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 316 (325)
T d1pgua1 237 SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316 (325)
T ss_dssp TCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEET
T ss_pred cccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEEC
Confidence 433333332222223333333 12344444544556777777764332 22221111 011223344344444455444
Q ss_pred CCcEEEEc
Q psy6570 180 TNNILKIN 187 (713)
Q Consensus 180 ~~~i~~~~ 187 (713)
.+.|..++
T Consensus 317 dg~i~vwd 324 (325)
T d1pgua1 317 DGTLNFYE 324 (325)
T ss_dssp TSCEEEEE
T ss_pred CCEEEEEE
Confidence 56665543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.79 E-value=0.43 Score=44.58 Aligned_cols=117 Identities=11% Similarity=0.036 Sum_probs=70.4
Q ss_pred CCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEE-EcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecC
Q psy6570 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTL-LNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASID 103 (713)
Q Consensus 25 ~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l-~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~d 103 (713)
...+..+++.+....|+... ..+.|.+.++.+.....+ ....-..+..|+++|...+|+..+.. . .|...++.
T Consensus 136 ~~~~~~~~~s~~~~~l~~g~----~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~-~i~~~~~~ 209 (299)
T d1nr0a2 136 SYNSSCVALSNDKQFVAVGG----QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS-R-KVIPYSVA 209 (299)
T ss_dssp SSCEEEEEECTTSCEEEEEE----TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETT-S-CEEEEEGG
T ss_pred cccccccccccccccccccc----ccccccccccccccccccccccccccccccccccccccccccccc-c-cccccccc
Confidence 34567788887666665544 467888888876543322 22223567899999866666655433 3 67777765
Q ss_pred CCCcEEEEe---CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCC
Q psy6570 104 GKNKFNLVD---NNIQWPTGITIDYPSQRLYWADPKARTIESINLNGK 148 (713)
Q Consensus 104 G~~~~~l~~---~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~ 148 (713)
......... ........|++++.+.+|+... ..+.|...++...
T Consensus 210 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs-~dg~i~iwd~~~~ 256 (299)
T d1nr0a2 210 NNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS-LDNSVIVWNMNKP 256 (299)
T ss_dssp GTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTCT
T ss_pred ccccccccccccccccccccccccccccceEEEc-CCCEEEEEECCCC
Confidence 433222111 1123457889997766665544 4567888887653
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.77 E-value=1.7 Score=41.93 Aligned_cols=168 Identities=11% Similarity=0.027 Sum_probs=87.0
Q ss_pred CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCC
Q psy6570 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGK 105 (713)
Q Consensus 26 ~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~ 105 (713)
.....+++.+....++.+.. .+.|.+.++.......... ....+..+++.+.++.++++..... .|...++...
T Consensus 164 ~~v~~~~~~~~~~~~~~~~~----~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~-~i~i~~~~~~ 237 (388)
T d1erja_ 164 QDIYSLDYFPSGDKLVSGSG----DRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDR-AVRVWDSETG 237 (388)
T ss_dssp SCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTS-CEEEEETTTC
T ss_pred cccccccccccccccccccc----ceeeeeeeccccccccccc-cccccccccccCCCCCeEEEEcCCC-eEEEeecccC
Confidence 33466777766566665543 5778888877655444332 2345666777777777766654433 6777766544
Q ss_pred CcEEEEeC-------CCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEE----------EecCCCCccceeeee
Q psy6570 106 NKFNLVDN-------NIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVV----------YHTEDNGYKPYKLEV 168 (713)
Q Consensus 106 ~~~~l~~~-------~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~----------~~~~~~~~~p~~i~~ 168 (713)
.....+.. .......|++++....|+.+. ..+.|...++........ ............+++
T Consensus 238 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 316 (388)
T d1erja_ 238 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316 (388)
T ss_dssp CEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEEC---------------CEEEEEECCSSCEEEEEE
T ss_pred ccceeeccccccccCCCCCEEEEEECCCCCEEEEEE-CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEE
Confidence 33222211 122356789987666665543 445676666543221111 000000112234444
Q ss_pred e-CCeEEEEeCCCCcEEEEcccCCCcceeeecc
Q psy6570 169 F-EDNLYFSTYRTNNILKINKFGNSDFNVLANN 200 (713)
Q Consensus 169 ~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~ 200 (713)
. .+.++++-...+.|..++...+..+..+...
T Consensus 317 s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H 349 (388)
T d1erja_ 317 TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 349 (388)
T ss_dssp CGGGCEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCC
Confidence 3 2334444445677777776655555544433
|
| >d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Transforming growth factor alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.68 E-value=0.009 Score=39.64 Aligned_cols=34 Identities=24% Similarity=0.672 Sum_probs=25.5
Q ss_pred CCCCCCCCeEecCCCCcceeecCCCcccCCCCcC
Q psy6570 596 HNYCDNAGLCSYSKQGKPVCTCVNGWSGITCSER 629 (713)
Q Consensus 596 ~~~C~~~g~C~~~~~g~~~C~C~~G~~G~~C~~~ 629 (713)
.+.|.|++.|.......+.|.|++||+|..|+..
T Consensus 12 ~~yClnGgcc~~~~~~~~~C~C~~gy~G~RCe~~ 45 (49)
T d1moxc_ 12 TQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHA 45 (49)
T ss_dssp SCSSTTEEEEEETTTTEEEEEECTTEESTTSCEE
T ss_pred CCEeeCCeEEecCCCCCcEeECCCCCEecCCccc
Confidence 4567777777555556788999999999998853
|
| >d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Heparin-binding epidermal growth factor, HBEGF species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.58 E-value=0.0078 Score=38.10 Aligned_cols=32 Identities=41% Similarity=1.037 Sum_probs=24.3
Q ss_pred CCCCCCCeecCCCCccCCCCCceeeCCCCcccCCCCc
Q psy6570 634 HFCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQT 670 (713)
Q Consensus 634 ~~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~ 670 (713)
+.|.+ |+|.. +.......|.|+.||+|.+|+.
T Consensus 8 ~yCih-G~C~~----i~~l~~~~C~C~~gY~G~RCq~ 39 (41)
T d1xdtr_ 8 DFCIH-GECKY----VKELRAPSCICHPGYHGERCHG 39 (41)
T ss_dssp TCCSS-EEECC----BGGGTBCCEEECTTEESTTCCE
T ss_pred CEeEC-cEEee----cCcCCCceeECCCCCeecCccc
Confidence 46777 89975 2233447899999999999985
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.55 E-value=0.88 Score=42.28 Aligned_cols=161 Identities=11% Similarity=-0.004 Sum_probs=83.9
Q ss_pred CCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCC
Q psy6570 25 LHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDG 104 (713)
Q Consensus 25 ~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG 104 (713)
...+.++++.+.+..++++.. +.|.+.+.. +...... ...+..+++.|....|+.... .. .|...++.+
T Consensus 99 ~~~~~~~~~s~~g~~~~~~~~-----~~i~~~~~~-~~~~~~~---~~~~~~~~~s~~~~~l~~g~~-dg-~i~~~d~~~ 167 (299)
T d1nr0a2 99 SSQPLGLAVSADGDIAVAACY-----KHIAIYSHG-KLTEVPI---SYNSSCVALSNDKQFVAVGGQ-DS-KVHVYKLSG 167 (299)
T ss_dssp SSCEEEEEECTTSSCEEEEES-----SEEEEEETT-EEEEEEC---SSCEEEEEECTTSCEEEEEET-TS-EEEEEEEET
T ss_pred ccccccccccccccccccccc-----ccccccccc-ccccccc---ccccccccccccccccccccc-cc-ccccccccc
Confidence 344566777665554444332 455555532 2222221 245677888876555555432 23 677777765
Q ss_pred CCcEEEE-eCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeE-EEecCCCCccceeeeee-CCeEEEEeCCCC
Q psy6570 105 KNKFNLV-DNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFV-VYHTEDNGYKPYKLEVF-EDNLYFSTYRTN 181 (713)
Q Consensus 105 ~~~~~l~-~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~-~~~~~~~~~~p~~i~~~-~~~ly~td~~~~ 181 (713)
.....+. ...-.....|++++...+|+.+. ..+.|...++....... +............|++. ++.++++-...+
T Consensus 168 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg 246 (299)
T d1nr0a2 168 ASVSEVKTIVHPAEITSVAFSNNGAFLVATD-QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 246 (299)
T ss_dssp TEEEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccceEEEcCCC
Confidence 5433322 22344568899998777776655 45667777765432211 11111111122455554 344455544556
Q ss_pred cEEEEcccCCCcceee
Q psy6570 182 NILKINKFGNSDFNVL 197 (713)
Q Consensus 182 ~i~~~~~~~~~~~~~~ 197 (713)
.|+..+.........+
T Consensus 247 ~i~iwd~~~~~~~~~~ 262 (299)
T d1nr0a2 247 SVIVWNMNKPSDHPII 262 (299)
T ss_dssp CEEEEETTCTTSCCEE
T ss_pred EEEEEECCCCCcceEE
Confidence 7777766544443333
|
| >d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: Integrin beta EGF-like domains domain: Integrin beta EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.33 E-value=0.0073 Score=34.46 Aligned_cols=25 Identities=36% Similarity=1.097 Sum_probs=18.3
Q ss_pred CCCCCCeEecCCCCcceeecCCCcccCCCC
Q psy6570 598 YCDNAGLCSYSKQGKPVCTCVNGWSGITCS 627 (713)
Q Consensus 598 ~C~~~g~C~~~~~g~~~C~C~~G~~G~~C~ 627 (713)
.|+++|.|.-.. |.|.+||+|..|.
T Consensus 4 ~C~ghG~C~CG~-----C~C~~gw~G~~CN 28 (31)
T d1jv2b4 4 MCSGHGQCSCGD-----CLCDSDWTGYYCN 28 (31)
T ss_dssp CSCCCTTCCSTT-----TCCCTTEESSSSC
T ss_pred eccCCCcccCCc-----eEccCCccccccc
Confidence 467777776554 8888888888774
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.28 E-value=1.4 Score=40.45 Aligned_cols=163 Identities=10% Similarity=-0.030 Sum_probs=85.7
Q ss_pred CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCC
Q psy6570 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGK 105 (713)
Q Consensus 26 ~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~ 105 (713)
.....|++.+.++.| ++-. ..+.|.+.++........+.........|++++....|+..... . .+...+....
T Consensus 18 ~~I~~l~~sp~~~~l-~s~s---~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~ 91 (317)
T d1vyhc1 18 SPVTRVIFHPVFSVM-VSAS---EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD-M-TIKLWDFQGF 91 (317)
T ss_dssp SCEEEEEECSSSSEE-EEEE---SSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETT-S-CCCEEETTSS
T ss_pred CCeEEEEEcCCCCEE-EEEe---CCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccc-c-cccccccccc
Confidence 346789998765544 4544 46788888876443333333334567889998755555444433 2 3444444433
Q ss_pred CcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeeee-CCeEEEEeCCCCcEE
Q psy6570 106 NKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEVF-EDNLYFSTYRTNNIL 184 (713)
Q Consensus 106 ~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~~-~~~ly~td~~~~~i~ 184 (713)
.....+.........+.+.+....|+... ..+.+...++........+... ......+++. ++.++.+-...+.|.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~v~ 168 (317)
T d1vyhc1 92 ECIRTMHGHDHNVSSVSIMPNGDHIVSAS-RDKTIKMWEVQTGYCVKTFTGH--REWVRMVRPNQDGTLIASCSNDQTVR 168 (317)
T ss_dssp CEEECCCCCSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTCCEEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ccccccccccccceeeeccCCCceEEeec-cCcceeEeecccceeeeEEccC--CCcceeeecccCCCEEEEEeCCCeEE
Confidence 33333222334456677776666655443 4556666666543332222221 2233444444 334555545566676
Q ss_pred EEcccCCCcceee
Q psy6570 185 KINKFGNSDFNVL 197 (713)
Q Consensus 185 ~~~~~~~~~~~~~ 197 (713)
..+.........+
T Consensus 169 ~~~~~~~~~~~~~ 181 (317)
T d1vyhc1 169 VWVVATKECKAEL 181 (317)
T ss_dssp EEETTTCCEEEEE
T ss_pred EEeeccceeeEEE
Confidence 6665544443333
|
| >d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Heparin-binding epidermal growth factor, HBEGF species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.06 E-value=0.013 Score=37.06 Aligned_cols=30 Identities=33% Similarity=0.934 Sum_probs=20.5
Q ss_pred CCCCCeeec-CCCCCCeeecCCCcccCCccc
Q psy6570 315 DCNHGTCEF-DDDFDPHCICQENFYGTYCEK 344 (713)
Q Consensus 315 ~C~~~~C~~-~~~~~~~C~C~~g~~G~~C~~ 344 (713)
-|.||+|.. .+...+.|.|..||+|..|+.
T Consensus 9 yCihG~C~~i~~l~~~~C~C~~gY~G~RCq~ 39 (41)
T d1xdtr_ 9 FCIHGECKYVKELRAPSCICHPGYHGERCHG 39 (41)
T ss_dssp CCSSEEECCBGGGTBCCEEECTTEESTTCCE
T ss_pred EeECcEEeecCcCCCceeECCCCCeecCccc
Confidence 377788865 233346788888888887753
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.72 E-value=2.5 Score=38.61 Aligned_cols=173 Identities=6% Similarity=-0.069 Sum_probs=80.3
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCc
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNK 107 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~ 107 (713)
...+.+.+.++.|+.. . ..+.+.+.++........+.........+++++....|+... ... .|...++.....
T Consensus 104 ~~~~~~~~~~~~~~~~-~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~-~v~~~~~~~~~~ 177 (317)
T d1vyhc1 104 VSSVSIMPNGDHIVSA-S---RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS-NDQ-TVRVWVVATKEC 177 (317)
T ss_dssp EEEEEECSSSSEEEEE-E---TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTS-CEEEEETTTCCE
T ss_pred ceeeeccCCCceEEee-c---cCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEe-CCC-eEEEEeecccee
Confidence 3445566555555433 3 356777777665443333333345677788887544444333 222 566666554433
Q ss_pred EEEEeCCCCCCeeEEEeCCC-------------------CeEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeee
Q psy6570 108 FNLVDNNIQWPTGITIDYPS-------------------QRLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEV 168 (713)
Q Consensus 108 ~~l~~~~~~~p~glavd~~~-------------------~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~ 168 (713)
...+.........+++.+.. +.++.+-...+.|...++........+.. ......++++
T Consensus 178 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--~~~~v~~~~~ 255 (317)
T d1vyhc1 178 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG--HDNWVRGVLF 255 (317)
T ss_dssp EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC--CSSCEEEEEE
T ss_pred eEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeC--CCCCEEEEEE
Confidence 33332222222333333222 22233333345555555543322111111 1112234444
Q ss_pred e-CCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEE
Q psy6570 169 F-EDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVL 208 (713)
Q Consensus 169 ~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~ 208 (713)
. .+.++++-...+.|..++...+..+..+......+..++
T Consensus 256 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~ 296 (317)
T d1vyhc1 256 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD 296 (317)
T ss_dssp CSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEE
T ss_pred CCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 3 334444444567787777766665555544333334443
|
| >d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: Integrin beta EGF-like domains domain: Integrin beta EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.64 E-value=0.012 Score=33.53 Aligned_cols=25 Identities=28% Similarity=0.858 Sum_probs=20.9
Q ss_pred CCCCCCeecCCCCccCCCCCceeeCCCCcccCCCC
Q psy6570 635 FCFNGGTCREQNYSLDPDLKPICICPRGYAGVRCQ 669 (713)
Q Consensus 635 ~C~~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~ 669 (713)
.|.+++.|.- +.|.|.+||+|+.|.
T Consensus 4 ~C~ghG~C~C----------G~C~C~~gw~G~~CN 28 (31)
T d1jv2b4 4 MCSGHGQCSC----------GDCLCDSDWTGYYCN 28 (31)
T ss_dssp CSCCCTTCCS----------TTTCCCTTEESSSSC
T ss_pred eccCCCcccC----------CceEccCCccccccc
Confidence 4677788876 789999999999984
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=93.46 E-value=0.29 Score=45.40 Aligned_cols=109 Identities=7% Similarity=0.061 Sum_probs=73.1
Q ss_pred CCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccC--C--CCeEEEEecCCCCcEEEEe
Q psy6570 37 GKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELG--I--KPRISGASIDGKNKFNLVD 112 (713)
Q Consensus 37 ~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~--~--~~~I~~~~~dG~~~~~l~~ 112 (713)
+++|.|+.. +.|++++++|...+.|... .....+.++.|...+|.|+... . ...|+++++++...+.|..
T Consensus 12 G~~v~f~~~-----~dl~~~d~~~g~~~~Lt~~-~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~ 85 (281)
T d1k32a2 12 GDRIIFVCC-----DDLWEHDLKSGSTRKIVSN-LGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY 85 (281)
T ss_dssp TTEEEEEET-----TEEEEEETTTCCEEEEECS-SSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC
T ss_pred CCEEEEEeC-----CcEEEEECCCCCEEEEecC-CCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeee
Confidence 667777654 4699999998888777643 3456778899888888876421 1 1369999998887766532
Q ss_pred C------CCCCCeeEEEeCCCCeEEEEcCCC-----CcEEEEeCCCCcee
Q psy6570 113 N------NIQWPTGITIDYPSQRLYWADPKA-----RTIESINLNGKDRF 151 (713)
Q Consensus 113 ~------~~~~p~glavd~~~~~LY~~d~~~-----~~I~~~~~~g~~~~ 151 (713)
. .......+++.+.+++|+++.... ..+..++.++...+
T Consensus 86 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (281)
T d1k32a2 86 FSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV 135 (281)
T ss_dssp CCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE
T ss_pred cCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE
Confidence 1 122456788998899999886432 23566666665443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.25 E-value=1.2 Score=45.23 Aligned_cols=102 Identities=11% Similarity=0.149 Sum_probs=56.9
Q ss_pred eEEEEecCCceEEEEEcCC----CC-CcceEEEcCCCCcEEE---EccCCCCeEEEEecC-------CCCcEEEEeCCCC
Q psy6570 52 NIMVSTLEGRKKRTLLNTG----LN-EPYDIALEPLSGRMFW---TELGIKPRISGASID-------GKNKFNLVDNNIQ 116 (713)
Q Consensus 52 ~I~~~~~~G~~~~~l~~~~----~~-~p~~iavD~~~~~ly~---td~~~~~~I~~~~~d-------G~~~~~l~~~~~~ 116 (713)
.|.+++......+++..+. +. ......+.+.++.++| ++......++.+.+. |...+.|......
T Consensus 281 ~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~ 360 (465)
T d1xfda1 281 ILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWD 360 (465)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSC
T ss_pred eEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCce
Confidence 5777777665555554321 11 1234566666665544 333333367766543 3322333222222
Q ss_pred CCeeEEEeCCCCeEEEEc----CCCCcEEEEeCCCCceeEE
Q psy6570 117 WPTGITIDYPSQRLYWAD----PKARTIESINLNGKDRFVV 153 (713)
Q Consensus 117 ~p~glavd~~~~~LY~~d----~~~~~I~~~~~~g~~~~~~ 153 (713)
.-.-+++|..++.||++- +....|++++++|+.....
T Consensus 361 V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~ 401 (465)
T d1xfda1 361 VTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQC 401 (465)
T ss_dssp EEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBC
T ss_pred EEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCccee
Confidence 223468999999999974 3455699999999765443
|
| >d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Coagulation factor VIIa species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.25 E-value=0.016 Score=39.26 Aligned_cols=37 Identities=14% Similarity=0.356 Sum_probs=25.7
Q ss_pred CCCCCCCCCCeeeccCC-CceeeeCCCCccccccCCCCCc
Q psy6570 223 CDDKPCHQSALCINLPS-SHTCLCPDHLTEELNVTSGKMS 261 (713)
Q Consensus 223 C~~~~C~~~~~C~~~~g-~~~C~C~~G~~~~~~~~~~~c~ 261 (713)
|+.+..+-.++|++.++ +|+|.|++||. +..+..+|+
T Consensus 2 C~~~NGGC~h~C~~~~~~~~~C~C~~Gy~--L~~D~~tC~ 39 (53)
T d2bz6l1 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYS--LLADGVSCT 39 (53)
T ss_dssp TTSGGGGCSSEEEEETTTEEEEECCTTEE--ECTTSSCEE
T ss_pred CCCCCCCCcCEeeeCCCCCEEeECCCCCE--ECCCCCccc
Confidence 44443222899999987 58999999998 344555554
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.91 E-value=3.6 Score=38.11 Aligned_cols=130 Identities=12% Similarity=0.032 Sum_probs=68.8
Q ss_pred eEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEe
Q psy6570 76 DIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDRFVVYH 155 (713)
Q Consensus 76 ~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~ 155 (713)
.+... ..+.++++..... .|...++........+.......+.|++++.+..|+.+ ...+.|...++..........
T Consensus 189 ~~~~~-~~~~~~~~~~~d~-~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~-s~d~~i~~~~~~~~~~~~~~~ 265 (340)
T d1tbga_ 189 SLSLA-PDTRLFVSGACDA-SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG-SDDATCRLFDLRADQELMTYS 265 (340)
T ss_dssp EEEEC-TTSSEEEEEETTT-EEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTEEEEEEC
T ss_pred eeccc-cccceeEEeecCc-eEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeecccccccccc
Confidence 34444 3445555543333 66666665443333333334456789999766555544 456778888877655444333
Q ss_pred cCCCCccceeeeee-CCeEEEEeCCCCcEEEEcccCCCcceeeeccccccccEE
Q psy6570 156 TEDNGYKPYKLEVF-EDNLYFSTYRTNNILKINKFGNSDFNVLANNLNRASDVL 208 (713)
Q Consensus 156 ~~~~~~~p~~i~~~-~~~ly~td~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~ 208 (713)
..........+++. .+.++++....+.|..++...+.....+......+..+.
T Consensus 266 ~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~ 319 (340)
T d1tbga_ 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319 (340)
T ss_dssp CTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred cccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 32212223445554 334555555667788887766655555544333334443
|
| >d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.82 E-value=0.027 Score=38.66 Aligned_cols=37 Identities=16% Similarity=0.330 Sum_probs=26.2
Q ss_pred CCCCCCCCCCeeeccCC-CceeeeCCCCccccccCCCCCc
Q psy6570 223 CDDKPCHQSALCINLPS-SHTCLCPDHLTEELNVTSGKMS 261 (713)
Q Consensus 223 C~~~~C~~~~~C~~~~g-~~~C~C~~G~~~~~~~~~~~c~ 261 (713)
|+.+..+-.++|++.++ +|+|.|++||.. ..+...|+
T Consensus 3 C~~~NGgC~h~C~~~~~~~~~C~C~~Gy~L--~~D~~tC~ 40 (57)
T d1rfnb_ 3 CNIKNGRCEQFCKNSADNKVVCSCTEGYRL--AENQKSCE 40 (57)
T ss_dssp TTGGGGGCSSEEEECTTSCEEEECCTTEEE--CTTSSSEE
T ss_pred cCCCCCCcccEeeeCCCCCeEeECCCCCEE--CCCCCccc
Confidence 55443223899999986 799999999983 34555554
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.75 E-value=3.8 Score=37.95 Aligned_cols=107 Identities=8% Similarity=-0.020 Sum_probs=62.0
Q ss_pred CCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeC--C
Q psy6570 37 GKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDN--N 114 (713)
Q Consensus 37 ~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~--~ 114 (713)
...++++-. ..+.|.+.++........+......+..|+++|....|+... ... .|...++........+.. .
T Consensus 195 ~~~~~~~~~---~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s-~d~-~i~~~~~~~~~~~~~~~~~~~ 269 (340)
T d1tbga_ 195 DTRLFVSGA---CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDA-TCRLFDLRADQELMTYSHDNI 269 (340)
T ss_dssp TSSEEEEEE---TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTS-CEEEEETTTTEEEEEECCTTC
T ss_pred ccceeEEee---cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEe-CCC-eEEEEeecccccccccccccc
Confidence 344555544 467788888765444333333335678899997554444433 333 677777765544333322 2
Q ss_pred CCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCc
Q psy6570 115 IQWPTGITIDYPSQRLYWADPKARTIESINLNGKD 149 (713)
Q Consensus 115 ~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~ 149 (713)
......|++++....|+.+. ..+.|...++....
T Consensus 270 ~~~i~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~ 303 (340)
T d1tbga_ 270 ICGITSVSFSKSGRLLLAGY-DDFNCNVWDALKAD 303 (340)
T ss_dssp CSCEEEEEECSSSCEEEEEE-TTSCEEEEETTTCC
T ss_pred cCceEEEEECCCCCEEEEEE-CCCEEEEEECCCCc
Confidence 23356789997666565544 45778888875443
|
| >d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: Integrin beta EGF-like domains domain: Integrin beta EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.74 E-value=0.031 Score=35.44 Aligned_cols=26 Identities=35% Similarity=0.919 Sum_probs=16.5
Q ss_pred CCCCCCeEecCCCCcceeecC-CCcccCCCCc
Q psy6570 598 YCDNAGLCSYSKQGKPVCTCV-NGWSGITCSE 628 (713)
Q Consensus 598 ~C~~~g~C~~~~~g~~~C~C~-~G~~G~~C~~ 628 (713)
.|+.+|+|... +|.|. +||.|.+|+.
T Consensus 12 iCng~G~C~cG-----~C~C~~~gy~G~~Ce~ 38 (43)
T d1jv2b5 12 LCSGRGKCECG-----SCVCIQPGSYGDTCEK 38 (43)
T ss_dssp GGGGTEEEETT-----EEEECCSSCBSTTSCB
T ss_pred EECCCCEEECC-----EeEeCCCCccCCcccc
Confidence 36666777643 37774 5777777765
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.53 E-value=3.6 Score=37.44 Aligned_cols=113 Identities=14% Similarity=0.026 Sum_probs=58.8
Q ss_pred ceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCC-CCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCc
Q psy6570 29 RGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTG-LNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNK 107 (713)
Q Consensus 29 ~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~-~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~ 107 (713)
...++.+....++++-. ..+.|...++............ ...+..|+++|...+|+..+.. . .|...++.....
T Consensus 122 ~~~~~~~~~~~~~v~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-g-~i~i~d~~~~~~ 196 (287)
T d1pgua2 122 PGSAVSLSQNYVAVGLE---EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM-G-KILLYDLQSREV 196 (287)
T ss_dssp CEEEEEECSSEEEEEET---TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETT-S-CEEEEETTTTEE
T ss_pred eeeeeeccCcceeeecc---ccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccc-c-cccceeeccccc
Confidence 34556555666666554 4456777777654433333222 2456789999866666665533 3 577666654322
Q ss_pred EEE-EeCCCCCCeeEEEeCCC---------CeEEEEcCCCCcEEEEeCC
Q psy6570 108 FNL-VDNNIQWPTGITIDYPS---------QRLYWADPKARTIESINLN 146 (713)
Q Consensus 108 ~~l-~~~~~~~p~glavd~~~---------~~LY~~d~~~~~I~~~~~~ 146 (713)
... ........+.|++.|.. ..++++-...+.|+..++.
T Consensus 197 ~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~ 245 (287)
T d1pgua2 197 KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 245 (287)
T ss_dssp EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred ccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence 111 11112334566666533 2333443344556665653
|
| >d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: Integrin beta EGF-like domains domain: Integrin beta EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.80 E-value=0.076 Score=33.61 Aligned_cols=27 Identities=37% Similarity=0.892 Sum_probs=22.2
Q ss_pred CCCCCcEEeecCCCceeeCC-CCCcCCCCCcC
Q psy6570 559 YCSNNGTCVLIEGKPSCKCL-PPYSGKQCTER 589 (713)
Q Consensus 559 ~C~~~~~C~~~~g~~~C~C~-~G~~G~~C~~~ 589 (713)
.|+.+|+|+ -.+|+|. +||.|..|+..
T Consensus 12 iCng~G~C~----cG~C~C~~~gy~G~~Ce~C 39 (43)
T d1jv2b5 12 LCSGRGKCE----CGSCVCIQPGSYGDTCEKC 39 (43)
T ss_dssp GGGGTEEEE----TTEEEECCSSCBSTTSCBC
T ss_pred EECCCCEEE----CCEeEeCCCCccCCccccC
Confidence 488899998 3479995 79999999864
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=91.71 E-value=1.3 Score=44.01 Aligned_cols=167 Identities=11% Similarity=0.052 Sum_probs=85.3
Q ss_pred cCCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcC------CCCCcceEEEcCCCC-cEEEEccC---
Q psy6570 23 SNLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNT------GLNEPYDIALEPLSG-RMFWTELG--- 92 (713)
Q Consensus 23 ~~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~------~~~~p~~iavD~~~~-~ly~td~~--- 92 (713)
.......+|+|||.+..+.++-. ..+-|++..-.|+.=+.+... ......+|+|||.+. .||+....
T Consensus 9 ~~gg~~~~i~~~P~~~~~~ya~~---~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~ 85 (427)
T d2ebsa1 9 GGGGYITGIVAHPKTKDLLYART---DIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVG 85 (427)
T ss_dssp CBCSCEEEEEECSSSTTCEEEEE---SSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTT
T ss_pred CCCCcEEEEEECCCCCCEEEEEe---cCCCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccC
Confidence 34566789999997654433433 345688877656554333211 122355899999874 55654321
Q ss_pred -CCCeEEEEecCCCCcEEEEeCC---------CCCCeeEEEeCCCC-eEEEEcCCCCcEEEEeCCCCceeEEEecCCCCc
Q psy6570 93 -IKPRISGASIDGKNKFNLVDNN---------IQWPTGITIDYPSQ-RLYWADPKARTIESINLNGKDRFVVYHTEDNGY 161 (713)
Q Consensus 93 -~~~~I~~~~~dG~~~~~l~~~~---------~~~p~glavd~~~~-~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~ 161 (713)
....|++. .||..--..+... ......|+|||.+. .||++. ..+.|++..=.|..-+.+........
T Consensus 86 ~~~~gi~~S-~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~-~~~gl~~S~D~G~tW~~~~~~~~~~~ 163 (427)
T d2ebsa1 86 DEWAAFYVS-EDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT-RTEGIWKSSDRAKTWTNVTSIPDAFT 163 (427)
T ss_dssp SSCCEEEEE-SSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEEC-SSSCEEEESSTTSSCEECTTSSCCCC
T ss_pred CcCccEEEe-CCCCccceeecCCcccCccccCccceeEEEECCCccCcccccc-cccceeeecCCCceeeecccCccccc
Confidence 12356655 4544433332211 12234699998765 455543 34557764434444333322111111
Q ss_pred c---ceeeeee---CCeEEEEeCCCCcEEEEcccCCCcce
Q psy6570 162 K---PYKLEVF---EDNLYFSTYRTNNILKINKFGNSDFN 195 (713)
Q Consensus 162 ~---p~~i~~~---~~~ly~td~~~~~i~~~~~~~~~~~~ 195 (713)
. ...|.++ .+.||.+......|++-. +++...+
T Consensus 164 ~~~~~~~i~~~p~~~~~~y~~~~~~~giy~S~-DgG~TW~ 202 (427)
T d2ebsa1 164 NGIGYTSVIFDPERNGTIYASATAPQGMYVTH-DGGVSWE 202 (427)
T ss_dssp SSSCEEEEEECTTSTTCEEEEESSTTCEEEES-STTSSCE
T ss_pred CCccceEEEecccccceeeeeeeecccceecc-CCCCCce
Confidence 1 1233332 456887766666676544 3444433
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.56 E-value=2.1 Score=37.36 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=29.6
Q ss_pred CceeEEEcc--CcccEEecCC-CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEc
Q psy6570 7 GNVTRVKRE--MNLKTVLSNL-HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLN 68 (713)
Q Consensus 7 ~~I~~~~~~--~~~~~~~~~~-~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~ 68 (713)
+.|+..++. |.+..+.+.- -+..++++| +.++.++-. ..++...+-++|...+.|.+
T Consensus 82 Hai~~~Nlk~~GEE~~i~spk~vRI~S~~yd--dk~vvF~Ga---sed~~~LYviegGklrkL~~ 141 (313)
T d2hu7a1 82 HALFKVNTSRPGEEQRLEAVKPMRILSGVDT--GEAVVFTGA---TEDRVALYALDGGGLRELAR 141 (313)
T ss_dssp EEEEEEETTSTTCEEECTTSCSBEEEEEEEC--SSCEEEEEE---CSSCEEEEEEETTEEEEEEE
T ss_pred eeEEEEccCCCCeeeEecCCceEEEEEeeec--CceEEEecc---cCCceEEEEEeCCceeeecc
Confidence 345555655 4333322211 234467776 445555555 45666666666666655554
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.49 E-value=6 Score=37.54 Aligned_cols=155 Identities=13% Similarity=0.023 Sum_probs=81.8
Q ss_pred CceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCc
Q psy6570 28 PRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNK 107 (713)
Q Consensus 28 p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~ 107 (713)
...|++.+.+..|+ +-. ..+.|.+.+...................+++.+....++.+... . .|...++.....
T Consensus 124 V~~l~~s~~~~~l~-s~~---~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-~-~i~~~d~~~~~~ 197 (388)
T d1erja_ 124 IRSVCFSPDGKFLA-TGA---EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD-R-TVRIWDLRTGQC 197 (388)
T ss_dssp EEEEEECTTSSEEE-EEE---TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-S-EEEEEETTTTEE
T ss_pred EEEEEECCCCCcce-ecc---cccccccccccccccccccccccccccccccccccccccccccc-e-eeeeeecccccc
Confidence 35678877655454 434 46778888876655444443334566788888765566655432 3 566666665443
Q ss_pred EEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCCce-eEEEecCC----CCccceeeeee-CCeEEEEeCCCC
Q psy6570 108 FNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNGKDR-FVVYHTED----NGYKPYKLEVF-EDNLYFSTYRTN 181 (713)
Q Consensus 108 ~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~~~-~~~~~~~~----~~~~p~~i~~~-~~~ly~td~~~~ 181 (713)
..... .......+++.+.++.++++-...+.|...++..... ..+..... .......|++. ++.++++-...+
T Consensus 198 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~ 276 (388)
T d1erja_ 198 SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 276 (388)
T ss_dssp EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccc-cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCC
Confidence 33332 3334556667666666666655566777777654332 22211110 01112345544 333444444555
Q ss_pred cEEEEccc
Q psy6570 182 NILKINKF 189 (713)
Q Consensus 182 ~i~~~~~~ 189 (713)
.|..++..
T Consensus 277 ~i~iwd~~ 284 (388)
T d1erja_ 277 SVKLWNLQ 284 (388)
T ss_dssp EEEEEEC-
T ss_pred cEEEEecc
Confidence 66665544
|
| >d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: Integrin beta EGF-like domains domain: Integrin beta EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.25 E-value=0.034 Score=35.04 Aligned_cols=23 Identities=35% Similarity=0.817 Sum_probs=19.9
Q ss_pred CCCeecCCCCccCCCCCceeeCCCCcccCCCCc
Q psy6570 638 NGGTCREQNYSLDPDLKPICICPRGYAGVRCQT 670 (713)
Q Consensus 638 ~~~~C~~~~~~~~~~~~~~C~C~~Gy~G~~C~~ 670 (713)
.+|+|.. ++|+|.+||+|..|+.
T Consensus 19 ~hG~C~~----------G~C~C~~Gw~G~~Ce~ 41 (41)
T d1l3ya_ 19 GRGLCFC----------GKCRCHPGFEGSACQA 41 (41)
T ss_dssp HHEEEET----------TEEEECTTCCTTTTCC
T ss_pred CCCeEEC----------CEEEcCCCCcccCccC
Confidence 4688987 7999999999999974
|
| >d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: Integrin beta EGF-like domains domain: Integrin beta EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.98 E-value=0.059 Score=33.91 Aligned_cols=22 Identities=45% Similarity=1.206 Sum_probs=16.7
Q ss_pred CCCEEEcCCCeeeCCCCCccCCCC
Q psy6570 393 NGGTCIATTQTCVCPPGFTGDTCQ 416 (713)
Q Consensus 393 ~~~~C~~~~~~C~C~~g~~g~~C~ 416 (713)
.+|+|+. +.|.|.+||+|+.|+
T Consensus 19 ~hG~C~~--G~C~C~~Gw~G~~Ce 40 (41)
T d1l3ya_ 19 GRGLCFC--GKCRCHPGFEGSACQ 40 (41)
T ss_dssp HHEEEET--TEEEECTTCCTTTTC
T ss_pred CCCeEEC--CEEEcCCCCcccCcc
Confidence 4577875 678888888888775
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.25 E-value=6.3 Score=35.62 Aligned_cols=113 Identities=8% Similarity=-0.071 Sum_probs=58.0
Q ss_pred CCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCC
Q psy6570 26 HDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGK 105 (713)
Q Consensus 26 ~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~ 105 (713)
..|..+++... +.++++-. ...|...+.........+.. .....++.+....++++....+ .|...++...
T Consensus 81 ~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~-~v~~~~~~~~ 151 (287)
T d1pgua2 81 SQPKVASANND-GFTAVLTN----DDDLLILQSFTGDIIKSVRL---NSPGSAVSLSQNYVAVGLEEGN-TIQVFKLSDL 151 (287)
T ss_dssp SCEEEEEECSS-SEEEEEET----TSEEEEEETTTCCEEEEEEC---SSCEEEEEECSSEEEEEETTTS-CEEEEETTEE
T ss_pred cceeeeeeccC-CceEEEee----cccceeeeccceeeeeeccc---cceeeeeeccCcceeeeccccc-eeeeeecccc
Confidence 45666666543 34444433 34455555443332222221 1223445545556666544333 5666665433
Q ss_pred CcEEEEeCC-CCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCCC
Q psy6570 106 NKFNLVDNN-IQWPTGITIDYPSQRLYWADPKARTIESINLNGK 148 (713)
Q Consensus 106 ~~~~l~~~~-~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g~ 148 (713)
.....+... ......|++++...+|+..+ ..+.|..+++...
T Consensus 152 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~ 194 (287)
T d1pgua2 152 EVSFDLKTPLRAKPSYISISPSETYIAAGD-VMGKILLYDLQSR 194 (287)
T ss_dssp EEEEECSSCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTT
T ss_pred ceeeeeeeccCCceeEEEeccCcccccccc-ccccccceeeccc
Confidence 322222222 23467899998877777666 4567777776543
|
| >d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: Laminin-type module domain: Laminin gamma1 chain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.06 E-value=0.075 Score=36.17 Aligned_cols=11 Identities=45% Similarity=1.340 Sum_probs=5.6
Q ss_pred CCCCCccCCCC
Q psy6570 406 CPPGFTGDTCQ 416 (713)
Q Consensus 406 C~~g~~g~~C~ 416 (713)
|.+||+|..|+
T Consensus 23 C~~~~~G~~Ce 33 (55)
T d1kloa1 23 CPTGTAGKRCE 33 (55)
T ss_dssp CCTTEESTTSC
T ss_pred CCCCCccCccc
Confidence 55555555544
|
| >d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.26 E-value=0.073 Score=35.37 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=19.9
Q ss_pred cEEeecCCCceeeCCCCCc----CCCCCcC
Q psy6570 564 GTCVLIEGKPSCKCLPPYS----GKQCTER 589 (713)
Q Consensus 564 ~~C~~~~g~~~C~C~~G~~----G~~C~~~ 589 (713)
..|+++.++|+|.|++||+ |+.|+..
T Consensus 11 ~~C~~~~g~~~C~C~~Gy~L~~D~~tC~~~ 40 (50)
T d1autl2 11 HYCLEEVGWRRCSCAPGYKLGDDLLQCHPA 40 (50)
T ss_dssp SEEEECSSSEEEECCTTEEECTTSSCEEEC
T ss_pred cEeecCCCCeEEECCCCCEECCCCCccccC
Confidence 4788888888899988886 5566543
|
| >d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: Laminin-type module domain: Laminin gamma1 chain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.23 E-value=0.072 Score=35.64 Aligned_cols=29 Identities=41% Similarity=1.070 Sum_probs=22.7
Q ss_pred eecCCCCCeecCCCCccCCCCCCccccCCCCCCcccCCCCccCC
Q psy6570 463 CSITDSGPKCMCSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGK 506 (713)
Q Consensus 463 C~~~~~~~~C~C~~G~~g~~C~~~~C~~~~~~~~C~C~~G~~g~ 506 (713)
|....| +|.|+++++|+.|+. |.+||++.
T Consensus 15 Cd~~tG--qC~Ck~~v~G~~Cd~-------------C~~g~~~~ 43 (51)
T d1kloa3 15 CNPVTG--QCQCLPHVSGRDCGT-------------CDPGYYNL 43 (51)
T ss_dssp CCTTTC--CCCBCTTEESTTCCE-------------ECTTCBCG
T ss_pred cCCCCC--eecCCCCCcCCCccc-------------ccccccCC
Confidence 444444 899999999999985 78888874
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.47 E-value=9.2 Score=35.10 Aligned_cols=147 Identities=12% Similarity=-0.010 Sum_probs=75.1
Q ss_pred CCCCCceEEEeccCCeEEEeecCCCCCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecC
Q psy6570 24 NLHDPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASID 103 (713)
Q Consensus 24 ~~~~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~d 103 (713)
.......+++++....++... ..+.|.+.++........+.........|++++ +.|+... ... .|...++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~-~dg-~i~iwd~~ 271 (355)
T d1nexb2 200 HTDRIYSTIYDHERKRCISAS----MDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAA-ADG-SIRGWDAN 271 (355)
T ss_dssp CSSCEEEEEEETTTTEEEEEE----TTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEEC-TTS-EEEEEETT
T ss_pred cccccccccccccceeeeccc----ccceEEeeecccccccccccccccccccccccc--ceeeeee-ccc-cccccccc
Confidence 334456677777766665444 357788888765554444433334566777763 3444333 333 67777776
Q ss_pred CCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC-CceeEEEecCCCCccceeeeeeCCeEEEEeCCCCc
Q psy6570 104 GKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINLNG-KDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNN 182 (713)
Q Consensus 104 G~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g-~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~~~~ 182 (713)
...++.... ......++.-+.+++|+.+-. .+.|...++.. ......... ....-..+++..+.++.+-...++
T Consensus 272 ~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~--~~~~V~~v~~~~~~~~~~~s~dg~ 346 (355)
T d1nexb2 272 DYSRKFSYH--HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILK--DADQIWSVNFKGKTLVAAVEKDGQ 346 (355)
T ss_dssp TCCEEEEEE--CTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTT--TCSEEEEEEEETTEEEEEEESSSC
T ss_pred ccceecccc--cCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEecC--CCCCEEEEEEcCCeEEEEEECCCc
Confidence 554433332 222334443334555555543 46788878653 322111111 111224566666666555444444
Q ss_pred E
Q psy6570 183 I 183 (713)
Q Consensus 183 i 183 (713)
+
T Consensus 347 ~ 347 (355)
T d1nexb2 347 S 347 (355)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.29 E-value=0.089 Score=35.11 Aligned_cols=24 Identities=25% Similarity=0.747 Sum_probs=17.8
Q ss_pred cEeccCCCCccccCCCCCc----CCCCc
Q psy6570 427 GVCVNKTTGLECDCPKFYY----GKNCQ 450 (713)
Q Consensus 427 ~~C~~~~~~~~C~C~~G~~----g~~C~ 450 (713)
..|+++.++|+|.|++||. +.+|+
T Consensus 10 h~C~~~~~~~~C~C~~Gy~L~~D~~tC~ 37 (51)
T d1kigl_ 10 QFCREERSEVRCSCAHGYVLGDDSKSCV 37 (51)
T ss_dssp SCCCEETTEECCCCCTTEEECTTSSCEE
T ss_pred cEeEcCCCcEEeEcCCCCEECCCCCccc
Confidence 4577888888888888886 45564
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.08 E-value=6.9 Score=35.71 Aligned_cols=114 Identities=12% Similarity=-0.059 Sum_probs=61.6
Q ss_pred CCceEEEeccCCeEEEeecCCCCCCeEEEEecCCce--EEEEEcC-CCCCcceEEEcCCCCcEEEEccCCCCeEEEEecC
Q psy6570 27 DPRGVAVDWVGKNLYWTDAGGRSSNNIMVSTLEGRK--KRTLLNT-GLNEPYDIALEPLSGRMFWTELGIKPRISGASID 103 (713)
Q Consensus 27 ~p~gla~D~~~~~ly~td~~~~~~~~I~~~~~~G~~--~~~l~~~-~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~d 103 (713)
...+|+|.+.++.|..+. ..+.|.+.+++... ...+... .......|++.+..+.++++-.... .|...++.
T Consensus 13 ~I~~l~fsp~~~~L~s~s----~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~-~v~~w~~~ 87 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITS----WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG-EILKVDLI 87 (342)
T ss_dssp CEEEEEEEGGGTEEEEEE----TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTS-CEEEECSS
T ss_pred CEEEEEEeCCCCEEEEEE----CCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccc-ceeeeecc
Confidence 357899998877666543 35778877765322 2222211 1244678888776666666654333 67777776
Q ss_pred CCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeC
Q psy6570 104 GKNKFNLVDNNIQWPTGITIDYPSQRLYWADPKARTIESINL 145 (713)
Q Consensus 104 G~~~~~l~~~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~ 145 (713)
...................+......++++-.....+...++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~ 129 (342)
T d1yfqa_ 88 GSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDP 129 (342)
T ss_dssp SSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECH
T ss_pred cccccccccccccccccccccccccccccccccccccceeec
Confidence 665555443333222223332233344444444455555554
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.99 E-value=2.3 Score=42.62 Aligned_cols=83 Identities=6% Similarity=0.023 Sum_probs=51.7
Q ss_pred CCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCC-----CCeEEEEecCCCCcEEEEeCCCC----CCe
Q psy6570 49 SSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGI-----KPRISGASIDGKNKFNLVDNNIQ----WPT 119 (713)
Q Consensus 49 ~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~-----~~~I~~~~~dG~~~~~l~~~~~~----~p~ 119 (713)
....|++++++|...+.+.... ....++ +.+.++.||++.... ...|++++++|..+..++...+. .-.
T Consensus 342 g~~~ly~~~~~g~~~~~lt~g~-~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~ 419 (470)
T d2bgra1 342 GYRHICYFQIDKKDCTFITKGT-WEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYY 419 (470)
T ss_dssp SCEEEEEEETTCSCCEESCCSS-SCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBE
T ss_pred cCceeEEEeccCCceeeeccCC-eeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEE
Confidence 3456889999998877665433 334443 233467888874321 12599999999887777643322 224
Q ss_pred eEEEeCCCCeEEEE
Q psy6570 120 GITIDYPSQRLYWA 133 (713)
Q Consensus 120 glavd~~~~~LY~~ 133 (713)
.++|+|+++++..+
T Consensus 420 s~~fSpdgky~~~~ 433 (470)
T d2bgra1 420 SVSFSKEAKYYQLR 433 (470)
T ss_dssp EEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEE
Confidence 67888776654433
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.92 E-value=9.9 Score=34.85 Aligned_cols=135 Identities=13% Similarity=0.103 Sum_probs=74.7
Q ss_pred CCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCC
Q psy6570 49 SSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQ 128 (713)
Q Consensus 49 ~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~ 128 (713)
....|...++..................+++++....++.... .. .|...++........+.........|+++ .+
T Consensus 179 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~-~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~ 254 (355)
T d1nexb2 179 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM-DT-TIRIWDLENGELMYTLQGHTALVGLLRLS--DK 254 (355)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET-TS-CEEEEETTTCCEEEEECCCSSCCCEEEEC--SS
T ss_pred ccceeeeeecccccceeeeeccccccccccccccceeeecccc-cc-eEEeeeccccccccccccccccccccccc--cc
Confidence 3566777777654444344344456778888876665555443 23 57777776555444444333445677776 34
Q ss_pred eEEEEcCCCCcEEEEeCCCCceeEEEecCCCCccceeeee--eCCeEEEEeCCCCcEEEEcccCCCc
Q psy6570 129 RLYWADPKARTIESINLNGKDRFVVYHTEDNGYKPYKLEV--FEDNLYFSTYRTNNILKINKFGNSD 193 (713)
Q Consensus 129 ~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~p~~i~~--~~~~ly~td~~~~~i~~~~~~~~~~ 193 (713)
.|+ +-...+.|...++....+...... .....+.. .+++++.+. ..+.|...+...+..
T Consensus 255 ~l~-~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~ 315 (355)
T d1nexb2 255 FLV-SAAADGSIRGWDANDYSRKFSYHH----TNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKL 315 (355)
T ss_dssp EEE-EECTTSEEEEEETTTCCEEEEEEC----TTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCB
T ss_pred eee-eeecccccccccccccceeccccc----CCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCE
Confidence 444 444567788888765544333222 12223332 255565554 356777777655443
|
| >d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.91 E-value=0.11 Score=34.66 Aligned_cols=26 Identities=27% Similarity=0.625 Sum_probs=21.2
Q ss_pred cEEeecCCCceeeCCCCCc----CCCCCcC
Q psy6570 564 GTCVLIEGKPSCKCLPPYS----GKQCTER 589 (713)
Q Consensus 564 ~~C~~~~g~~~C~C~~G~~----G~~C~~~ 589 (713)
..|++++++|+|.|++||. ++.|+..
T Consensus 12 h~C~n~~g~~~C~C~~Gy~L~~D~~tC~~~ 41 (51)
T d2p3ua1 12 QFCHEEQNSVVCSCARGYTLADNGKACIPT 41 (51)
T ss_dssp SEEEEETTEEEEECCTTEEECTTSSCEEES
T ss_pred cEeecCCCCeEeEcCCCCEECCCCCccccC
Confidence 4799999999999999997 6667654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.07 E-value=7 Score=38.72 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=42.7
Q ss_pred CcEEE-EccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCeEEEEcC------CCCcEEEEeCCCCceeEEEe
Q psy6570 84 GRMFW-TELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQRLYWADP------KARTIESINLNGKDRFVVYH 155 (713)
Q Consensus 84 ~~ly~-td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~LY~~d~------~~~~I~~~~~~g~~~~~~~~ 155 (713)
+.++| ++.....+|++++++|...+.+...... ..++ +...++.||++-. ....|++++++|.....++.
T Consensus 332 ~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~-v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt 408 (470)
T d2bgra1 332 SFYKIISNEEGYRHICYFQIDKKDCTFITKGTWE-VIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS 408 (470)
T ss_dssp EEEEEEECTTSCEEEEEEETTCSCCEESCCSSSC-EEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESS
T ss_pred CcEEEEeccCcCceeEEEeccCCceeeeccCCee-EEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEec
Confidence 34444 3433334799999999887766543322 2333 3334778888632 23359999999876655543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.57 E-value=3.7 Score=41.21 Aligned_cols=55 Identities=5% Similarity=0.080 Sum_probs=36.5
Q ss_pred EEEcCCCCcEEEEccCC---CCeEEEEecCCCCcEEEEeCCCC---CCeeEEEeCCCCeEE
Q psy6570 77 IALEPLSGRMFWTELGI---KPRISGASIDGKNKFNLVDNNIQ---WPTGITIDYPSQRLY 131 (713)
Q Consensus 77 iavD~~~~~ly~td~~~---~~~I~~~~~dG~~~~~l~~~~~~---~p~glavd~~~~~LY 131 (713)
+++|..++.|||+.... ..+|++++++|+..+.++...+. .-..++|++..+++.
T Consensus 365 ~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v 425 (465)
T d1xfda1 365 LAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFL 425 (465)
T ss_dssp EEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEE
T ss_pred EEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEE
Confidence 57999999999986542 23699999999876555432221 124677776555544
|
| >d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: Laminin-type module domain: Laminin gamma1 chain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.23 E-value=0.28 Score=33.17 Aligned_cols=33 Identities=33% Similarity=0.789 Sum_probs=22.0
Q ss_pred CCCCCeecCCCCccCCCCCcee-eCCCCcccCCCCccc
Q psy6570 636 CFNGGTCREQNYSLDPDLKPIC-ICPRGYAGVRCQTLV 672 (713)
Q Consensus 636 C~~~~~C~~~~~~~~~~~~~~C-~C~~Gy~G~~C~~~~ 672 (713)
|.++++|.. ....+.++| .|++||+|.+|+.-.
T Consensus 3 C~~~~~c~~----~~~~~~~vC~~C~~~~~G~~Ce~C~ 36 (55)
T d1kloa1 3 CPGGSSCAI----VPKTKEVVCTHCPTGTAGKRCELCD 36 (55)
T ss_dssp SCTTCCEEE----CSSSCCEEECSCCTTEESTTSCEEC
T ss_pred CcCCCccce----eCCCCCEEcCCCCCCCccCcccccC
Confidence 445555543 123344678 599999999998754
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.97 E-value=4.4 Score=37.19 Aligned_cols=116 Identities=12% Similarity=0.087 Sum_probs=61.2
Q ss_pred CCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcE-EEEe--CCCCCCeeEEEeCCCCeEEEEcCCCCcEEEEeCCC
Q psy6570 71 LNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKF-NLVD--NNIQWPTGITIDYPSQRLYWADPKARTIESINLNG 147 (713)
Q Consensus 71 ~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~-~l~~--~~~~~p~glavd~~~~~LY~~d~~~~~I~~~~~~g 147 (713)
-....+|++.|...+|..+... . .|..-+++..... .+.. ..-.....|++.+..+.+.++-...+.|...++..
T Consensus 11 ~d~I~~l~fsp~~~~L~s~s~D-g-~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~ 88 (342)
T d1yfqa_ 11 KDYISDIKIIPSKSLLLITSWD-G-SLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETT-S-EEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCEEEEEEeCCCCEEEEEECC-C-eEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccc
Confidence 3557899999876666555432 2 5555555443322 2221 12334578888877676666655667788877766
Q ss_pred CceeEEEecCCCCccceeeeeeCCeEEEEeCCCCcEEEEcc
Q psy6570 148 KDRFVVYHTEDNGYKPYKLEVFEDNLYFSTYRTNNILKINK 188 (713)
Q Consensus 148 ~~~~~~~~~~~~~~~p~~i~~~~~~ly~td~~~~~i~~~~~ 188 (713)
......................+..++++....+.+...+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~ 129 (342)
T d1yfqa_ 89 SPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDP 129 (342)
T ss_dssp SSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECH
T ss_pred ccccccccccccccccccccccccccccccccccccceeec
Confidence 55444433322111122222334444454444555555543
|
| >d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.62 E-value=0.28 Score=32.34 Aligned_cols=13 Identities=23% Similarity=0.713 Sum_probs=7.2
Q ss_pred CCCccccCCCCCc
Q psy6570 433 TTGLECDCPKFYY 445 (713)
Q Consensus 433 ~~~~~C~C~~G~~ 445 (713)
.++|+|.|++||.
T Consensus 28 ~~~y~C~C~~G~~ 40 (50)
T d1ijqa2 28 SPKFTCACPDGML 40 (50)
T ss_dssp CCSEEEECCTTCE
T ss_pred CCCEEEeCCCCCE
Confidence 3455666666554
|
| >d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: Laminin-type module domain: Laminin gamma1 chain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.13 E-value=0.28 Score=33.31 Aligned_cols=31 Identities=29% Similarity=0.814 Sum_probs=23.8
Q ss_pred eeecCCCCCeec-CCCCccCCCCCCccccCCCCCCcccCCCCccCCC
Q psy6570 462 ECSITDSGPKCM-CSPGYSGKKCDTCTCLNGDSGPKCMCSPGYSGKK 507 (713)
Q Consensus 462 ~C~~~~~~~~C~-C~~G~~g~~C~~~~C~~~~~~~~C~C~~G~~g~~ 507 (713)
.|....| +|. |.+++.|+.|+. |.+||+|+.
T Consensus 14 ~Cd~~tG--~C~~C~~nt~G~~Cd~-------------C~~G~yg~~ 45 (56)
T d1kloa2 14 NCNRLTG--ECLKCIYNTAGFYCDR-------------CKEGFFGNP 45 (56)
T ss_dssp CBCTTTC--CBCCBCTTEETTTTCE-------------ECTTEEECT
T ss_pred ccCCCCC--CCCCCCCCCCCCCcCc-------------ccCCcccCC
Confidence 4544444 895 999999999986 889999854
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=82.52 E-value=11 Score=32.82 Aligned_cols=132 Identities=13% Similarity=0.157 Sum_probs=73.7
Q ss_pred CCCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCc---EEEEccC----CCCeEEEEecC--CCCcEEEEeCCCCCCe
Q psy6570 49 SSNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGR---MFWTELG----IKPRISGASID--GKNKFNLVDNNIQWPT 119 (713)
Q Consensus 49 ~~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~---ly~td~~----~~~~I~~~~~d--G~~~~~l~~~~~~~p~ 119 (713)
..+.|..+-++|.....|. ..|.....+|.-+. +|.-|.. .+ .|+..++. |...+ +.+..-.+..
T Consensus 34 seG~vni~~l~g~~~vkLt----kePI~~~~~Pk~~ldfi~f~RDV~kGkE~H-ai~~~Nlk~~GEE~~-i~spk~vRI~ 107 (313)
T d2hu7a1 34 SEGSVNAYLYDGGETVKLN----REPINSVLDPHYGVGRVILVRDVSKGAEQH-ALFKVNTSRPGEEQR-LEAVKPMRIL 107 (313)
T ss_dssp ETTEEEEEEESSSSCEECC----SSCCSEECEECTTBSEEEEEEECSTTSCCE-EEEEEETTSTTCEEE-CTTSCSBEEE
T ss_pred ccceEEEEEEeCCEEEEEe----cccccCcCCCccCcceEEEEeehhcCccee-eEEEEccCCCCeeeE-ecCCceEEEE
Confidence 3678888888887766655 45777777776543 3444533 34 67777877 43221 1110101112
Q ss_pred eEEEeCCCCeEEEEcCCCCcEEEEeCCCCceeEEEecCC-------CCccceeeeeeCC---eEEEEeCCCCcEEEEcc
Q psy6570 120 GITIDYPSQRLYWADPKARTIESINLNGKDRFVVYHTED-------NGYKPYKLEVFED---NLYFSTYRTNNILKINK 188 (713)
Q Consensus 120 glavd~~~~~LY~~d~~~~~I~~~~~~g~~~~~~~~~~~-------~~~~p~~i~~~~~---~ly~td~~~~~i~~~~~ 188 (713)
.++.| ++++-++-+..++...+-++|...+.+..-.. ...+-.|+-++.+ .+|++|..++.+..+.+
T Consensus 108 S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~tp 184 (313)
T d2hu7a1 108 SGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDS 184 (313)
T ss_dssp EEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEECC
T ss_pred Eeeec--CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEecC
Confidence 34444 66777777666776666677776666543311 1122244444422 36778876777766654
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=82.42 E-value=28 Score=35.24 Aligned_cols=16 Identities=6% Similarity=0.131 Sum_probs=13.3
Q ss_pred eeEEEeCCCCeEEEEc
Q psy6570 119 TGITIDYPSQRLYWAD 134 (713)
Q Consensus 119 ~glavd~~~~~LY~~d 134 (713)
.+.++|+..+.+|+.-
T Consensus 384 ~~~a~dp~~~~~yvp~ 399 (560)
T d1kv9a2 384 HSMSFNPGTGLVYIPY 399 (560)
T ss_dssp SCCEEETTTTEEEEEE
T ss_pred ccccccCCCCeeeccc
Confidence 4789999999999864
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.46 E-value=19 Score=32.53 Aligned_cols=140 Identities=9% Similarity=-0.004 Sum_probs=66.9
Q ss_pred CCeEEEEecCCceEEEEEcCCCCCcceEEEcCCCCcEEEEccCCCCeEEEEecCCCCcEEEEeCCCCCCeeEEEeCCCCe
Q psy6570 50 SNNIMVSTLEGRKKRTLLNTGLNEPYDIALEPLSGRMFWTELGIKPRISGASIDGKNKFNLVDNNIQWPTGITIDYPSQR 129 (713)
Q Consensus 50 ~~~I~~~~~~G~~~~~l~~~~~~~p~~iavD~~~~~ly~td~~~~~~I~~~~~dG~~~~~l~~~~~~~p~glavd~~~~~ 129 (713)
.+.|...++........+.. .....+.+.+. +..+++-.... .|...++..................++++ .++
T Consensus 156 d~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~-~~~l~s~~~dg-~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~ 229 (342)
T d2ovrb2 156 DFMVKVWDPETETCLHTLQG--HTNRVYSLQFD-GIHVVSGSLDT-SIRVWDVETGNCIHTLTGHQSLTSGMELK--DNI 229 (342)
T ss_dssp TSCEEEEEGGGTEEEEEECC--CSSCEEEEEEC-SSEEEEEETTS-CEEEEETTTCCEEEEECCCCSCEEEEEEE--TTE
T ss_pred CCeEEEeecccceeeEEEcC--cccccccccCC-CCEEEEEeCCC-eEEEeecccceeeeEecccccceeEEecC--CCE
Confidence 45555555544333222222 12233333332 33333332223 57777766544433333223333455555 444
Q ss_pred EEEEcCCCCcEEEEeCCCCceeEEEecC-CCCccceeeeeeCCeEEEEeCCCCcEEEEcccCCCcceee
Q psy6570 130 LYWADPKARTIESINLNGKDRFVVYHTE-DNGYKPYKLEVFEDNLYFSTYRTNNILKINKFGNSDFNVL 197 (713)
Q Consensus 130 LY~~d~~~~~I~~~~~~g~~~~~~~~~~-~~~~~p~~i~~~~~~ly~td~~~~~i~~~~~~~~~~~~~~ 197 (713)
|+ +-...+.|+..++............ ........++...+ ++++-...+.|...+...+..+..+
T Consensus 230 l~-s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~s~Dg~i~iwd~~tg~~i~~~ 296 (342)
T d2ovrb2 230 LV-SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN-FVITSSDDGTVKLWDLKTGEFIRNL 296 (342)
T ss_dssp EE-EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EE-EEcCCCEEEEEecccccccccccccceeeeceeecccCCC-eeEEEcCCCEEEEEECCCCCEEEEE
Confidence 44 4445677888887665444333321 11223344555454 4455556677888876655544333
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=81.26 E-value=31 Score=34.98 Aligned_cols=16 Identities=25% Similarity=0.042 Sum_probs=13.0
Q ss_pred eeEEEeCCCCeEEEEc
Q psy6570 119 TGITIDYPSQRLYWAD 134 (713)
Q Consensus 119 ~glavd~~~~~LY~~d 134 (713)
.+.|+||..+.||+..
T Consensus 389 ~~~a~dP~~~~~yv~~ 404 (571)
T d2ad6a1 389 GVDSYDPESRTLYAGL 404 (571)
T ss_dssp CBCEEETTTTEEEEEE
T ss_pred ccceECCCCceEEEec
Confidence 4589999999999853
|