Psyllid ID: psy6616

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-
Protein Sequence
MKYFTELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGCGLY
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHcccccccccEccEEcccccHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MKYFTELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMtcatdtnniQFVFDAVTDVIIAnnlrgcgly
Flexible Loop (DISEMBL)
MKYFTELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGCGLY
Low Complexity Region (SEG)
MKYFTELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGCGLY
Disordered region (IsUnstruct)
*****ELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGCG**
Disordered Region (DISOPRED)
MKYFTELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGCGLY
Disordered Region (DISEMBL)
MKYFTELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGCGLY
Disordered Region (DISPRO)
MKYFTELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGCGLY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKYFTELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGCGLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	71	2.2.26 [Sep-21-2011]
P38404	354	Guanine nucleotide-bindin	N/A	N/A	0.887	0.177	0.984	4e-31
P16378	354	Guanine nucleotide-bindin	yes	N/A	0.887	0.177	0.952	2e-30
P51875	354	Guanine nucleotide-bindin	yes	N/A	0.887	0.177	0.888	1e-27
O15976	357	Guanine nucleotide-bindin	N/A	N/A	0.887	0.176	0.888	2e-27
P51877	354	Guanine nucleotide-bindin	N/A	N/A	0.887	0.177	0.873	5e-27
P30683	354	Guanine nucleotide-bindin	N/A	N/A	0.887	0.177	0.873	5e-27
P53359	355	Guanine nucleotide-bindin	N/A	N/A	0.943	0.188	0.838	8e-26
P08239	354	Guanine nucleotide-bindin	yes	N/A	0.887	0.177	0.809	2e-25
P09471	354	Guanine nucleotide-bindin	yes	N/A	0.887	0.177	0.809	3e-25
P59215	354	Guanine nucleotide-bindin	yes	N/A	0.887	0.177	0.793	7e-25

>sp|P38404|GNAO_LOCMI Guanine nucleotide-binding protein G(o) subunit alpha OS=Locusta migratoria PE=3 SV=1

 Score =  133 bits (334), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 9   SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
           +GAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC
Sbjct: 292 AGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 351

Query: 69  GLY 71
           GLY
Sbjct: 352 GLY 354

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(o) protein function is not clear.
Locusta migratoria (taxid: 7004)

>sp|P16378|GNAO_DROME Guanine nucleotide-binding protein G(o) subunit alpha 47A OS=Drosophila melanogaster GN=G-oalpha47A PE=1 SV=1

 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query: 9   SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
           +G QEYGEAAAYIQAQFEAKNKST+KEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC
Sbjct: 292 TGGQEYGEAAAYIQAQFEAKNKSTSKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 351

Query: 69  GLY 71
           GLY
Sbjct: 352 GLY 354

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. Plays a role in glial cell differentiation during embryogenesis; loco, G-ialpha65A and the G-protein coupled receptor, moody, are required in the surface glia to achieve effective insulation of the nerve cord.

Drosophila melanogaster (taxid: 7227)

>sp|P51875|GNAO_CAEEL Guanine nucleotide-binding protein G(o) subunit alpha OS=Caenorhabditis elegans GN=goa-1 PE=1 SV=3

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/63 (88%), Positives = 58/63 (92%)

Query: 9   SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
           SG Q+Y EA+AYIQAQFEAKNKS  KEIYCHMTCATDT NIQFVFDAVTDVIIANNLRGC
Sbjct: 292 SGRQDYHEASAYIQAQFEAKNKSANKEIYCHMTCATDTTNIQFVFDAVTDVIIANNLRGC 351

Query: 69  GLY 71
           GLY
Sbjct: 352 GLY 354

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(o) protein function is not clear. Polarity determinants (par genes) may regulate lin-5/gpr-1/gpr-2/goa-1 locally to create the asymmetric forces that drive spindle movement.

Caenorhabditis elegans (taxid: 6239)

>sp|O15976|GNAO_MIZYE Guanine nucleotide-binding protein G(o) subunit alpha OS=Mizuhopecten yessoensis GN=SCGOA PE=2 SV=3

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/63 (88%), Positives = 59/63 (93%)

Query: 9   SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
           +G Q Y EAAAYIQAQFEAKNKS++KEIYCH TCATDTNNIQFVFDAVTDVIIANNLRGC
Sbjct: 295 TGNQTYEEAAAYIQAQFEAKNKSSSKEIYCHQTCATDTNNIQFVFDAVTDVIIANNLRGC 354

Query: 69  GLY 71
           GLY
Sbjct: 355 GLY 357

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(o) protein function is not clear.

Mizuhopecten yessoensis (taxid: 6573)

>sp|P51877|GNAO_HELTI Guanine nucleotide-binding protein G(o) subunit alpha OS=Helisoma trivolvis PE=2 SV=2

 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 55/63 (87%), Positives = 58/63 (92%)

Query: 9   SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
           +G Q Y EA+AYIQAQFEAKNKS+ KEIYCH TCATDTNNIQFVFDAVTDVIIANNLRGC
Sbjct: 292 TGKQMYQEASAYIQAQFEAKNKSSAKEIYCHQTCATDTNNIQFVFDAVTDVIIANNLRGC 351

Query: 69  GLY 71
           GLY
Sbjct: 352 GLY 354

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(o) protein function is not clear.

Helisoma trivolvis (taxid: 283763)

>sp|P30683|GNAO_LYMST Guanine nucleotide-binding protein G(o) subunit alpha OS=Lymnaea stagnalis PE=2 SV=3

 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 55/63 (87%), Positives = 58/63 (92%)

Query: 9   SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
           +G Q Y EA+AYIQAQFEAKNKS+ KEIYCH TCATDTNNIQFVFDAVTDVIIANNLRGC
Sbjct: 292 TGKQMYQEASAYIQAQFEAKNKSSAKEIYCHQTCATDTNNIQFVFDAVTDVIIANNLRGC 351

Query: 69  GLY 71
           GLY
Sbjct: 352 GLY 354

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(o) protein function is not clear.

Lymnaea stagnalis (taxid: 6523)

>sp|P53359|GNAO_MANSE Guanine nucleotide-binding protein G(o) subunit alpha OS=Manduca sexta PE=2 SV=2

 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 57/68 (83%), Positives = 59/68 (86%), Gaps = 1/68 (1%)

Query: 4   FTELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIAN 63
           F E     QEYGEAAAYI++QFEAKN STTKEIYCHMT ATDTNN QFVFDAVTDVIIAN
Sbjct: 289 FPEYTRAYQEYGEAAAYIRSQFEAKNNSTTKEIYCHMT-ATDTNNNQFVFDAVTDVIIAN 347

Query: 64  NLRGCGLY 71
           NLRGCGLY
Sbjct: 348 NLRGCGLY 355

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(o) protein function is not clear.

Manduca sexta (taxid: 7130)

>sp|P08239|GNAO_BOVIN Guanine nucleotide-binding protein G(o) subunit alpha OS=Bos taurus GN=GNAO1 PE=1 SV=4

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/63 (80%), Positives = 57/63 (90%)

Query: 9   SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
           +G+  Y +AAAYIQAQFE+KN+S  KEIYCHMTCATDTNNIQ VFDAVTD+IIANNLRGC
Sbjct: 292 TGSNTYEDAAAYIQAQFESKNRSPNKEIYCHMTCATDTNNIQVVFDAVTDIIIANNLRGC 351

Query: 69  GLY 71
           GLY
Sbjct: 352 GLY 354

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(o) protein function is not clear. Stimulated by RGS14.

Bos taurus (taxid: 9913)

>sp|P09471|GNAO_HUMAN Guanine nucleotide-binding protein G(o) subunit alpha OS=Homo sapiens GN=GNAO1 PE=1 SV=4

 Score =  114 bits (284), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 51/63 (80%), Positives = 56/63 (88%)

Query: 9   SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
           +G   Y +AAAYIQAQFE+KN+S  KEIYCHMTCATDTNNIQ VFDAVTD+IIANNLRGC
Sbjct: 292 TGPNTYEDAAAYIQAQFESKNRSPNKEIYCHMTCATDTNNIQVVFDAVTDIIIANNLRGC 351

Query: 69  GLY 71
           GLY
Sbjct: 352 GLY 354

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(o) protein function is not clear. Stimulated by RGS14.

Homo sapiens (taxid: 9606)

>sp|P59215|GNAO_RAT Guanine nucleotide-binding protein G(o) subunit alpha OS=Rattus norvegicus GN=Gnao1 PE=1 SV=2

 Score =  112 bits (280), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 55/63 (87%)

Query: 9   SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
            G+  Y +AAAYIQ QFE+KN+S  KEIYCHMTCATDTNNIQ VFDAVTD+IIANNLRGC
Sbjct: 292 PGSNTYEDAAAYIQTQFESKNRSPNKEIYCHMTCATDTNNIQVVFDAVTDIIIANNLRGC 351

Query: 69  GLY 71
           GLY
Sbjct: 352 GLY 354

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(o) protein function is not clear. Stimulated by RGS14.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
383852541	330	PREDICTED: guanine nucleotide-binding pr	0.887	0.190	0.984	9e-30
209180425	354	guanine nucleotide binding protein (G pr	0.887	0.177	0.984	1e-29
383852539	354	PREDICTED: guanine nucleotide-binding pr	0.887	0.177	0.984	1e-29
112982857	354	G protein alpha subunit Go isoform 1 [Bo	0.887	0.177	0.984	1e-29
283536458	354	guanine nucleotide-binding protein G(o)	0.887	0.177	0.984	1e-29
585173	354	RecName: Full=Guanine nucleotide-binding	0.887	0.177	0.984	2e-29
307202998	302	Guanine nucleotide-binding protein G(o)	0.887	0.208	0.984	2e-29
242015524	356	Guanine nucleotide-binding protein G(O)	0.887	0.176	0.984	3e-29
357614081	221	guanine nucleotide-binding protein G(o)	0.887	0.285	0.984	3e-29
290563180	354	G protein alpha subunit Go isoform 2 [Bo	0.887	0.177	0.968	3e-29

>gi|383852541|ref|XP_003701785.1| PREDICTED: guanine nucleotide-binding protein G(o) subunit alpha-like isoform 2 [Megachile rotundata]

 Score =  134 bits (336), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 9   SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
           +GAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC
Sbjct: 268 AGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 327

Query: 69  GLY 71
           GLY
Sbjct: 328 GLY 330

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|209180425|ref|NP_001129194.1| guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O [Acyrthosiphon pisum] gi|47524492|gb|AAT34978.1| guanine nucleotide-binding protein G(o) alpha subunit [Sitobion avenae]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 9   SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
           +GAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC
Sbjct: 292 AGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 351

Query: 69  GLY 71
           GLY
Sbjct: 352 GLY 354

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852539|ref|XP_003701784.1| PREDICTED: guanine nucleotide-binding protein G(o) subunit alpha-like isoform 1 [Megachile rotundata]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 9   SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
           +GAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC
Sbjct: 292 AGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 351

Query: 69  GLY 71
           GLY
Sbjct: 352 GLY 354

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|112982857|ref|NP_001036916.1| G protein alpha subunit Go isoform 1 [Bombyx mori] gi|56342245|dbj|BAD74000.1| G protein alpha subunit Go [Bombyx mori]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 9   SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
           +GAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC
Sbjct: 292 TGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 351

Query: 69  GLY 71
           GLY
Sbjct: 352 GLY 354

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|283536458|gb|ADB25316.1| guanine nucleotide-binding protein G(o) subunit alpha 1 isoform 1 [Bombyx mori]

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 9   SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
           +GAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC
Sbjct: 292 TGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 351

Query: 69  GLY 71
           GLY
Sbjct: 352 GLY 354

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|585173|sp|P38404.1|GNAO_LOCMI RecName: Full=Guanine nucleotide-binding protein G(o) subunit alpha

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 9   SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
           +GAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC
Sbjct: 292 AGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 351

Query: 69  GLY 71
           GLY
Sbjct: 352 GLY 354

Source: Locusta migratoria

Species: Locusta migratoria

Genus: Locusta

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202998|gb|EFN82214.1| Guanine nucleotide-binding protein G(o) subunit alpha [Harpegnathos saltator]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 9   SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
           +GAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC
Sbjct: 240 AGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 299

Query: 69  GLY 71
           GLY
Sbjct: 300 GLY 302

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015524|ref|XP_002428403.1| Guanine nucleotide-binding protein G(O) subunit alpha, putative [Pediculus humanus corporis] gi|212513015|gb|EEB15665.1| Guanine nucleotide-binding protein G(O) subunit alpha, putative [Pediculus humanus corporis]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/63 (98%), Positives = 62/63 (98%)

Query: 9   SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
           SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDT NIQFVFDAVTDVIIANNLRGC
Sbjct: 294 SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTTNIQFVFDAVTDVIIANNLRGC 353

Query: 69  GLY 71
           GLY
Sbjct: 354 GLY 356

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357614081|gb|EHJ68893.1| guanine nucleotide-binding protein G(o) subunit alpha 1 [Danaus plexippus]

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 9   SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
           +GAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC
Sbjct: 159 TGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 218

Query: 69  GLY 71
           GLY
Sbjct: 219 GLY 221

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|290563180|ref|NP_001166852.1| G protein alpha subunit Go isoform 2 [Bombyx mori] gi|283536460|gb|ADB25317.1| guanine nucleotide-binding protein G(o) subunit alpha 1 isoform 2 [Bombyx mori]

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 9   SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
           +GAQE+GEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC
Sbjct: 292 TGAQEFGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 351

Query: 69  GLY 71
           GLY
Sbjct: 352 GLY 354

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
FB|FBgn0001122	354	Galphao "G protein alpha o sub	0.887	0.177	0.952	7.1e-29
WB|WBGene00001648	354	goa-1 [Caenorhabditis elegans	0.887	0.177	0.888	2.5e-26
UNIPROTKB|P51875	354	goa-1 "Guanine nucleotide-bind	0.887	0.177	0.888	2.5e-26
UNIPROTKB|G8JKZ5	267	GNAO1 "Guanine nucleotide-bind	0.887	0.235	0.809	2e-24
UNIPROTKB|P08239	354	GNAO1 "Guanine nucleotide-bind	0.887	0.177	0.809	2e-24
UNIPROTKB|E1C347	302	GNAO1 "Uncharacterized protein	0.887	0.208	0.809	3.3e-24
UNIPROTKB|E2RLG2	354	GNAO1 "Uncharacterized protein	0.887	0.177	0.809	3.3e-24
UNIPROTKB|H3BNR5	94	GNAO1 "Guanine nucleotide-bind	0.887	0.670	0.809	3.3e-24
UNIPROTKB|P09471	354	GNAO1 "Guanine nucleotide-bind	0.887	0.177	0.809	3.3e-24
UNIPROTKB|Q6UIQ1	241	GNAO1 "Guanine nucleotide-bind	0.887	0.261	0.809	3.3e-24

FB|FBgn0001122 Galphao "G protein alpha o subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 60/63 (95%), Positives = 62/63 (98%)

Query:     9 SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
             +G QEYGEAAAYIQAQFEAKNKST+KEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC
Sbjct:   292 TGGQEYGEAAAYIQAQFEAKNKSTSKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 351

Query:    69 GLY 71
             GLY
Sbjct:   352 GLY 354

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS;IBA;NAS

GO:0003924 "GTPase activity" evidence=ISS;IBA;NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS;NAS

GO:0007507 "heart development" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IMP

GO:0001737 "establishment of imaginal disc-derived wing hair orientation" evidence=IMP

GO:0019991 "septate junction assembly" evidence=IMP

GO:0060857 "establishment of glial blood-brain barrier" evidence=IMP

GO:0030866 "cortical actin cytoskeleton organization" evidence=IMP

GO:0007419 "ventral cord development" evidence=IMP

GO:0008356 "asymmetric cell division" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0050916 "sensory perception of sweet taste" evidence=IMP

GO:0005525 "GTP binding" evidence=IDA

GO:0045886 "negative regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0042595 "behavioral response to starvation" evidence=IMP

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IBA

GO:0001664 "G-protein coupled receptor binding" evidence=IBA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IBA

GO:0004871 "signal transducer activity" evidence=IBA

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IBA

WB|WBGene00001648 goa-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 56/63 (88%), Positives = 58/63 (92%)

Query:     9 SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
             SG Q+Y EA+AYIQAQFEAKNKS  KEIYCHMTCATDT NIQFVFDAVTDVIIANNLRGC
Sbjct:   292 SGRQDYHEASAYIQAQFEAKNKSANKEIYCHMTCATDTTNIQFVFDAVTDVIIANNLRGC 351

Query:    69 GLY 71
             GLY
Sbjct:   352 GLY 354

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0019001 "guanyl nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040013 "negative regulation of locomotion" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0007212 "dopamine receptor signaling pathway" evidence=IMP

GO:0032094 "response to food" evidence=IMP

GO:0043051 "regulation of pharyngeal pumping" evidence=IGI

GO:0040012 "regulation of locomotion" evidence=IMP

GO:0005938 "cell cortex" evidence=IDA

GO:0046662 "regulation of oviposition" evidence=IMP

GO:0003924 "GTPase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0060259 "regulation of feeding behavior" evidence=IMP

GO:0006184 "GTP catabolic process" evidence=IDA

UNIPROTKB|P51875 goa-1 "Guanine nucleotide-binding protein G(o) subunit alpha" [Caenorhabditis elegans (taxid:6239)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 56/63 (88%), Positives = 58/63 (92%)

Query:     9 SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
             SG Q+Y EA+AYIQAQFEAKNKS  KEIYCHMTCATDT NIQFVFDAVTDVIIANNLRGC
Sbjct:   292 SGRQDYHEASAYIQAQFEAKNKSANKEIYCHMTCATDTTNIQFVFDAVTDVIIANNLRGC 351

Query:    69 GLY 71
             GLY
Sbjct:   352 GLY 354

GO:0005515 "protein binding" evidence=IPI

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IBA

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IBA

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IBA

GO:0005834 "heterotrimeric G-protein complex" evidence=IBA

GO:0004871 "signal transducer activity" evidence=IBA

GO:0003924 "GTPase activity" evidence=IBA

GO:0001664 "G-protein coupled receptor binding" evidence=IBA

UNIPROTKB|G8JKZ5 GNAO1 "Guanine nucleotide-binding protein G(o) subunit alpha" [Bos taurus (taxid:9913)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 51/63 (80%), Positives = 57/63 (90%)

Query:     9 SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
             +G+  Y +AAAYIQAQFE+KN+S  KEIYCHMTCATDTNNIQ VFDAVTD+IIANNLRGC
Sbjct:   205 TGSNTYEDAAAYIQAQFESKNRSPNKEIYCHMTCATDTNNIQVVFDAVTDIIIANNLRGC 264

Query:    69 GLY 71
             GLY
Sbjct:   265 GLY 267

GO:0008016 "regulation of heart contraction" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0007212 "dopamine receptor signaling pathway" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IEA

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|P08239 GNAO1 "Guanine nucleotide-binding protein G(o) subunit alpha" [Bos taurus (taxid:9913)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 51/63 (80%), Positives = 57/63 (90%)

Query:     9 SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
             +G+  Y +AAAYIQAQFE+KN+S  KEIYCHMTCATDTNNIQ VFDAVTD+IIANNLRGC
Sbjct:   292 TGSNTYEDAAAYIQAQFESKNRSPNKEIYCHMTCATDTNNIQVVFDAVTDIIIANNLRGC 351

Query:    69 GLY 71
             GLY
Sbjct:   352 GLY 354

GO:0031821 "G-protein coupled serotonin receptor binding" evidence=ISS

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=ISS

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=ISS

GO:0007212 "dopamine receptor signaling pathway" evidence=ISS

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=ISS

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0004871 "signal transducer activity" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0008016 "regulation of heart contraction" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1C347 GNAO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 51/63 (80%), Positives = 56/63 (88%)

Query:     9 SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
             +G   Y +AAAYIQAQFE+KN+S  KEIYCHMTCATDTNNIQ VFDAVTD+IIANNLRGC
Sbjct:   240 AGPNTYEDAAAYIQAQFESKNRSPNKEIYCHMTCATDTNNIQVVFDAVTDIIIANNLRGC 299

Query:    69 GLY 71
             GLY
Sbjct:   300 GLY 302

GO:0003924 "GTPase activity" evidence=IEA

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007212 "dopamine receptor signaling pathway" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0008016 "regulation of heart contraction" evidence=IEA

UNIPROTKB|E2RLG2 GNAO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 51/63 (80%), Positives = 56/63 (88%)

Query:     9 SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
             +G   Y +AAAYIQAQFE+KN+S  KEIYCHMTCATDTNNIQ VFDAVTD+IIANNLRGC
Sbjct:   292 TGPNTYEDAAAYIQAQFESKNRSPNKEIYCHMTCATDTNNIQVVFDAVTDIIIANNLRGC 351

Query:    69 GLY 71
             GLY
Sbjct:   352 GLY 354

GO:0005525 "GTP binding" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IEA

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|H3BNR5 GNAO1 "Guanine nucleotide-binding protein G(o) subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 51/63 (80%), Positives = 56/63 (88%)

Query:     9 SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
             +G   Y +AAAYIQAQFE+KN+S  KEIYCHMTCATDTNNIQ VFDAVTD+IIANNLRGC
Sbjct:    32 TGPNTYEDAAAYIQAQFESKNRSPNKEIYCHMTCATDTNNIQVVFDAVTDIIIANNLRGC 91

Query:    69 GLY 71
             GLY
Sbjct:    92 GLY 94

GO:0003924 "GTPase activity" evidence=IEA

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|P09471 GNAO1 "Guanine nucleotide-binding protein G(o) subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 51/63 (80%), Positives = 56/63 (88%)

Query:     9 SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
             +G   Y +AAAYIQAQFE+KN+S  KEIYCHMTCATDTNNIQ VFDAVTD+IIANNLRGC
Sbjct:   292 TGPNTYEDAAAYIQAQFESKNRSPNKEIYCHMTCATDTNNIQVVFDAVTDIIIANNLRGC 351

Query:    69 GLY 71
             GLY
Sbjct:   352 GLY 354

GO:0046872 "metal ion binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007568 "aging" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0008016 "regulation of heart contraction" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0031852 "mu-type opioid receptor binding" evidence=IEA

GO:0034097 "response to cytokine stimulus" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0043278 "response to morphine" evidence=IEA

GO:0043547 "positive regulation of GTPase activity" evidence=IEA

GO:0051430 "corticotropin-releasing hormone receptor 1 binding" evidence=IEA

GO:0051926 "negative regulation of calcium ion transport" evidence=IEA

GO:0003924 "GTPase activity" evidence=IBA

GO:0004871 "signal transducer activity" evidence=IBA

GO:0005834 "heterotrimeric G-protein complex" evidence=IBA

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IBA

GO:0007212 "dopamine receptor signaling pathway" evidence=IBA

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IBA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IBA

GO:0031821 "G-protein coupled serotonin receptor binding" evidence=IBA

GO:0006936 "muscle contraction" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

UNIPROTKB|Q6UIQ1 GNAO1 "Guanine nucleotide-binding protein" [Macaca mulatta (taxid:9544)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 51/63 (80%), Positives = 56/63 (88%)

Query:     9 SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
             +G   Y +AAAYIQAQFE+KN+S  KEIYCHMTCATDTNNIQ VFDAVTD+IIANNLRGC
Sbjct:   179 TGPNTYEDAAAYIQAQFESKNRSPNKEIYCHMTCATDTNNIQVVFDAVTDIIIANNLRGC 238

Query:    69 GLY 71
             GLY
Sbjct:   239 GLY 241

GO:0003924 "GTPase activity" evidence=ISS

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=ISS

GO:0007212 "dopamine receptor signaling pathway" evidence=ISS

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=ISS

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=ISS

GO:0031821 "G-protein coupled serotonin receptor binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q60397	GNAI3_CRIGR	No assigned EC number	0.7142	0.8732	0.9841	no	N/A
P16378	GNAO_DROME	No assigned EC number	0.9523	0.8873	0.1779	yes	N/A
P18872	GNAO_MOUSE	No assigned EC number	0.7936	0.8873	0.1779	yes	N/A
P38404	GNAO_LOCMI	No assigned EC number	0.9841	0.8873	0.1779	N/A	N/A
P08239	GNAO_BOVIN	No assigned EC number	0.8095	0.8873	0.1779	yes	N/A
P09471	GNAO_HUMAN	No assigned EC number	0.8095	0.8873	0.1779	yes	N/A
P51875	GNAO_CAEEL	No assigned EC number	0.8888	0.8873	0.1779	yes	N/A
P59215	GNAO_RAT	No assigned EC number	0.7936	0.8873	0.1779	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	71
cd00066	315	cd00066, G-alpha, Alpha subunit of G proteins (gua	7e-27
smart00275	342	smart00275, G_alpha, G protein alpha subunit	1e-22
pfam00503	329	pfam00503, G-alpha, G-protein alpha subunit	1e-20

>gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide binding)

 Score = 98.4 bits (246), Expect = 7e-27
 Identities = 34/64 (53%), Positives = 43/64 (67%)

Query: 2   KYFTELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVII 61
            YF +      +Y EAA YI+ +F   N++  KEIY H TCATDT NI+FVFDAV D+I+
Sbjct: 252 DYFPDYTGPPNDYEEAAKYIKKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIIL 311

Query: 62  ANNL 65
            NNL
Sbjct: 312 QNNL 315

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. Length = 315

>gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit

 Score = 87.2 bits (217), Expect = 1e-22
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 2   KYFTELLSGAQEYGEAAAYIQAQFEAKNKSTT-KEIYCHMTCATDTNNIQFVFDAVTDVI 60
            YF +   G  +Y  AA +I+ +F   N++++ K IY H TCATDT NI+ VFDAV D+I
Sbjct: 275 DYFPDY-KGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDII 333

Query: 61  IANNLRGCG 69
           +  NL+  G
Sbjct: 334 LQRNLKDAG 342

Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342

>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit

 Score = 82.3 bits (204), Expect = 1e-20
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 2   KYFTELLSGAQEYGEAAAYIQAQFEAKNK-STTKEIYCHMTCATDTNNIQFVFDAVTDVI 60
            YF E      +Y  A+ YI+ +F   NK ++ ++IY H T ATDT N++FVF+AV D+I
Sbjct: 259 DYFPEYEGDPNDYESASKYIRNKFLELNKNNSERKIYTHFTNATDTENVRFVFEAVKDII 318

Query: 61  IANNLRGCGLY 71
           + NNL+  GL 
Sbjct: 319 LQNNLKESGLL 329

G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	71
KOG0085|consensus	359		99.9
KOG0082|consensus	354		99.89
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.83
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.83
KOG0099|consensus	379		99.76
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.66

>KOG0085|consensus

Probab=99.90  E-value=3.4e-24  Score=147.57  Aligned_cols=69  Identities=43%  Similarity=0.702  Sum_probs=65.8

Q ss_pred             cccCCCCCCC-CChHHHHHHHHHHHHhhccCCCCCeeEeecccccCccHHHHHHHHHHHHHHhhhhhcCCC
Q psy6616           2 KYFTELLSGA-QEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGCGLY   71 (71)
Q Consensus         2 ~~Fp~~y~G~-~~~~~~~~fi~~kF~~~~~~~~r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl~~~~l~   71 (71)
                      +|||+ |+|| .|..+|.+||.++|.+.+++..|.+|+||||||||+||++||.+|+|+||+.||++++|+
T Consensus       290 ~YFPe-~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~LkE~NLv  359 (359)
T KOG0085|consen  290 DYFPE-FDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV  359 (359)
T ss_pred             HhCcc-cCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhhHhhccC
Confidence            69999 9998 688899999999999999888999999999999999999999999999999999999875

>KOG0082|consensus

Probab=99.89  E-value=1.3e-23  Score=149.13  Aligned_cols=69  Identities=57%  Similarity=0.922  Sum_probs=66.5

Q ss_pred             cccCCCCCCCCChHHHHHHHHHHHHhhccCCCCCeeEeecccccCccHHHHHHHHHHHHHHhhhhhcCCC
Q psy6616           2 KYFTELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGCGLY   71 (71)
Q Consensus         2 ~~Fp~~y~G~~~~~~~~~fi~~kF~~~~~~~~r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl~~~~l~   71 (71)
                      +|||| |+|++++++|.+||+.+|.+++.++.|++|+|+||||||+||+.||++|.|+|++.||+..||+
T Consensus       286 ~~Fpd-y~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk~~gl~  354 (354)
T KOG0082|consen  286 DCFPD-YKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLKDAGLI  354 (354)
T ss_pred             hhCcC-CCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            69999 9999999999999999999999887799999999999999999999999999999999999985

>smart00275 G_alpha G protein alpha subunit

Probab=99.83  E-value=1.2e-20  Score=132.99  Aligned_cols=67  Identities=46%  Similarity=0.859  Sum_probs=63.2

Q ss_pred             cccCCCCCCCCChHHHHHHHHHHHHhhccC-CCCCeeEeecccccCccHHHHHHHHHHHHHHhhhhhcC
Q psy6616           2 KYFTELLSGAQEYGEAAAYIQAQFEAKNKS-TTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGCG   69 (71)
Q Consensus         2 ~~Fp~~y~G~~~~~~~~~fi~~kF~~~~~~-~~r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl~~~~   69 (71)
                      +|||+ |+|++++++|.+||+++|.+++++ ++|.+|+|+||||||++++.||++|+++|++.||+..|
T Consensus       275 ~~fp~-y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l~~~~  342 (342)
T smart00275      275 DYFPD-YKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNLKDAG  342 (342)
T ss_pred             ccCCC-CCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            59999 999999999999999999999875 67999999999999999999999999999999998765

Subunit of G proteins that contains the guanine nucleotide binding site

>cd00066 G-alpha G protein alpha subunit

Probab=99.83  E-value=1.7e-20  Score=130.67  Aligned_cols=65  Identities=52%  Similarity=0.936  Sum_probs=61.3

Q ss_pred             cccCCCCCC-CCChHHHHHHHHHHHHhhccCCCCCeeEeecccccCccHHHHHHHHHHHHHHhhhhh
Q psy6616           2 KYFTELLSG-AQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG   67 (71)
Q Consensus         2 ~~Fp~~y~G-~~~~~~~~~fi~~kF~~~~~~~~r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl~~   67 (71)
                      +|||+ |+| ++++++|.+||+++|.++++.++|.+|+|+||||||++|+.||++|+++|++.||+.
T Consensus       252 ~~fp~-y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~l~~  317 (317)
T cd00066         252 DYFPD-YTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNNLKD  317 (317)
T ss_pred             ccCCC-CCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHHhcC
Confidence            69999 999 899999999999999999877789999999999999999999999999999999863

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG0099|consensus

Probab=99.76  E-value=5.3e-19  Score=123.29  Aligned_cols=58  Identities=33%  Similarity=0.473  Sum_probs=52.6

Q ss_pred             hHHHHHHHHHHHHhhcc---CCCCCeeEeecccccCccHHHHHHHHHHHHHHhhhhhcCCC
Q psy6616          14 YGEAAAYIQAQFEAKNK---STTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGCGLY   71 (71)
Q Consensus        14 ~~~~~~fi~~kF~~~~~---~~~r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl~~~~l~   71 (71)
                      +..|.-||++.|.++.+   +..+.+|+|||||+||+||+.||++|+|+|++.||++++|+
T Consensus       319 v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVFnDcrdiIqr~hlrqyeLl  379 (379)
T KOG0099|consen  319 VTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL  379 (379)
T ss_pred             hHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            56677899999998864   35789999999999999999999999999999999999985

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.66  E-value=9.1e-17  Score=113.94  Aligned_cols=58  Identities=43%  Similarity=0.810  Sum_probs=52.9

Q ss_pred             cccCCCCCCC--CChHHHHHHHHHHHHhhccCCC--CCeeEeecccccCccHHHHHHHHHHHH
Q psy6616           2 KYFTELLSGA--QEYGEAAAYIQAQFEAKNKSTT--KEIYCHMTCATDTNNIQFVFDAVTDVI   60 (71)
Q Consensus         2 ~~Fp~~y~G~--~~~~~~~~fi~~kF~~~~~~~~--r~iy~h~T~AtDt~ni~~vf~~V~d~I   60 (71)
                      +|||+ |+|+  +++++|.+||+++|.++.+...  |.+|+|+||||||++|+.||++|+|+|
T Consensus       328 ~~fp~-y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  328 KYFPD-YTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             GTSTT-GGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             hhCCC-CCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            69999 9986  8999999999999999876544  999999999999999999999999997

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	71
3c7k_A	333	Molecular Architecture Of Galphao And The Structura		6e-26
1shz_A	340	Crystal Structure Of The P115rhogef Rgrgs Domain In		2e-20
2ihb_A	323	Crystal Structure Of The Heterodimeric Complex Of H		6e-20
4g5r_A	330	Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330		6e-20
4g5o_A	330	Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length		6e-20
1as0_A	353	Gtp-Gamma-S Bound G42v Gia1 Length = 353		7e-20
3ums_A	354	Crystal Structure Of The G202a Mutant Of Human G-Al		7e-20
1gil_A	353	Structure Of Active Conformations Of Gia1 And The M		7e-20
2gtp_A	323	Crystal Structure Of The Heterodimeric Complex Of H		7e-20
3qe0_A	325	A Galpha-I1 P-Loop Mutation Prevents Transition To		7e-20
2xns_A	327	Crystal Structure Of Human G Alpha I1 Bound To A De		7e-20
1y3a_A	329	Structure Of G-Alpha-I1 Bound To A Gdp-Selective Pe		8e-20
4g5q_A	330	Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330		8e-20
3qi2_A	328	A Galpha P-Loop Mutation Prevents Transition To The		8e-20
1gp2_A	353	G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 Wi		8e-20
1gg2_A	353	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		8e-20
1svk_A	353	Structure Of The K180p Mutant Of Gi Alpha Subunit B		8e-20
3umr_A	354	Crystal Structure Of The G202d Mutant Of Human G-Al		8e-20
2ik8_A	324	Crystal Structure Of The Heterodimeric Complex Of H		8e-20
1kjy_A	325	Crystal Structure Of Human G[alpha]i1 Bound To The		8e-20
3onw_A	328	Structure Of A G-Alpha-I1 Mutant With Enhanced Affi		8e-20
2zjy_A	356	Structure Of The K349p Mutant Of Gi Alpha 1 Subunit		2e-19
3ffb_A	360	Crystal Structure Of A Fast Activating G Protein Mu		3e-19
3d7m_A	354	Crystal Structure Of The G Protein Fast-Exchange Do		1e-18
2ode_A	350	Crystal Structure Of The Heterodimeric Complex Of H		3e-17
3v00_C	356	Studies Of A Constitutively Active G-Alpha Subunit		1e-16
1fqj_A	325	Crystal Structure Of The Heterotrimeric Complex Of		2e-16
1tnd_A	324	The 2.2 Angstroms Crystal Structure Of Transducin-A		6e-16
1got_A	350	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		8e-16
1bh2_A	315	A326s Mutant Of An Inhibitory Alpha Subunit Length		2e-15
2g83_A	313	Structure Of Activated G-alpha-i1 Bound To A Nucleo		3e-15
4ekc_A	347	Structure Of Human Regulator Of G Protein Signaling		3e-08
2bcj_Q	353	Crystal Structure Of G Protein-coupled Receptor Kin		4e-08
3ah8_A	355	Structure Of Heterotrimeric G Protein Galpha-Q Beta		4e-08
3ohm_A	327	Crystal Structure Of Activated G Alpha Q Bound To I		4e-08
4gnk_A	353	Crystal Structure Of Galphaq In Complex With Full-l		4e-08
1zca_A	359	Crystal Structure Of G Alpha 12 In Complex With Gdp		1e-06

>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 333

Iteration: 1
 Score =  112 bits (279), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 55/63 (87%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
            G+  Y +AAAYIQ QFE+KN+S  KEIYCHMTCATDTNNIQ VFDAVTD+IIANNLRGC
Sbjct: 271 PGSNTYEDAAAYIQTQFESKNRSPNKEIYCHMTCATDTNNIQVVFDAVTDIIIANNLRGC 330
Query: 69  GLY 71
           GLY
Sbjct: 331 GLY 333

>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNK-STTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EAAAYIQ QFE  NK   TKEIY H TCATDT N+QFVFDAVTDVII NNL+ 
Sbjct: 277 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 336
Query: 68  CGLY 71
           CGL+
Sbjct: 337 CGLF 340

>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330

Iteration: 1
 Score = 92.4 bits (228), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EAAAYIQ QFE  N+   TKEIY H TCATDT N+QFVFDAVTDVII NNL+ 
Sbjct: 267 TGSNTYEEAAAYIQCQFEDLNRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKE 326
Query: 68  CGLY 71
           CGLY
Sbjct: 327 CGLY 330

>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length = 330

Iteration: 1
 Score = 92.4 bits (228), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EAAAYIQ QFE  N+   TKEIY H TCATDT N+QFVFDAVTDVII NNL+ 
Sbjct: 267 TGSNTYEEAAAYIQCQFEDLNRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKE 326
Query: 68  CGLY 71
           CGLY
Sbjct: 327 CGLY 330

>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1 Length = 353

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EAAAYIQ QFE  NK   TKEIY H TCATDT N+QFVFDAVTDVII NNL+ 
Sbjct: 290 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 349
Query: 68  CGLY 71
           CGL+
Sbjct: 350 CGLF 353

>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EAAAYIQ QFE  NK   TKEIY H TCATDT N+QFVFDAVTDVII NNL+ 
Sbjct: 291 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 350
Query: 68  CGLY 71
           CGL+
Sbjct: 351 CGLF 354

>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The Mechanism Of Gtp Hydrolysis Length = 353

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EAAAYIQ QFE  NK   TKEIY H TCATDT N+QFVFDAVTDVII NNL+ 
Sbjct: 290 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 349
Query: 68  CGLY 71
           CGL+
Sbjct: 350 CGLF 353

>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs1 And Activated Gi Alpha 1 Length = 323

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EAAAYIQ QFE  NK   TKEIY H TCATDT N+QFVFDAVTDVII NNL+ 
Sbjct: 260 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 319
Query: 68  CGLY 71
           CGL+
Sbjct: 320 CGLF 323

>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The Activated State Length = 325

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EAAAYIQ QFE  NK   TKEIY H TCATDT N+QFVFDAVTDVII NNL+ 
Sbjct: 262 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 321
Query: 68  CGLY 71
           CGL+
Sbjct: 322 CGLF 325

>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed Helical Peptide Derived From The Goloco Motif Of Rgs14 Length = 327

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EAAAYIQ QFE  NK   TKEIY H TCATDT N+QFVFDAVTDVII NNL+ 
Sbjct: 264 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 323
Query: 68  CGLY 71
           CGL+
Sbjct: 324 CGLF 327

>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide Provides Insight Into Guanine Nucleotide Exchange Length = 329

Iteration: 1
 Score = 92.0 bits (227), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EAAAYIQ QFE  NK   TKEIY H TCATDT N+QFVFDAVTDVII NNL+ 
Sbjct: 266 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 325
Query: 68  CGLY 71
           CGL+
Sbjct: 326 CGLF 329

>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330

Iteration: 1
 Score = 92.0 bits (227), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EAAAYIQ QFE  NK   TKEIY H TCATDT N+QFVFDAVTDVII NNL+ 
Sbjct: 267 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 326
Query: 68  CGLY 71
           CGL+
Sbjct: 327 CGLF 330

>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The Activated State: G42r Bound To Rgs14 Goloco Length = 328

Iteration: 1
 Score = 92.0 bits (227), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EAAAYIQ QFE  NK   TKEIY H TCATDT N+QFVFDAVTDVII NNL+ 
Sbjct: 265 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 324
Query: 68  CGLY 71
           CGL+
Sbjct: 325 CGLF 328

>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score = 92.0 bits (227), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EAAAYIQ QFE  NK   TKEIY H TCATDT N+QFVFDAVTDVII NNL+ 
Sbjct: 290 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 349
Query: 68  CGLY 71
           CGL+
Sbjct: 350 CGLF 353

>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score = 92.0 bits (227), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EAAAYIQ QFE  NK   TKEIY H TCATDT N+QFVFDAVTDVII NNL+ 
Sbjct: 290 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 349
Query: 68  CGLY 71
           CGL+
Sbjct: 350 CGLF 353

>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353

Iteration: 1
 Score = 92.0 bits (227), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EAAAYIQ QFE  NK   TKEIY H TCATDT N+QFVFDAVTDVII NNL+ 
Sbjct: 290 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 349
Query: 68  CGLY 71
           CGL+
Sbjct: 350 CGLF 353

>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score = 92.0 bits (227), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EAAAYIQ QFE  NK   TKEIY H TCATDT N+QFVFDAVTDVII NNL+ 
Sbjct: 291 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 350
Query: 68  CGLY 71
           CGL+
Sbjct: 351 CGLF 354

>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs16 And Activated Gi Alpha 1 Length = 324

Iteration: 1
 Score = 92.0 bits (227), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EAAAYIQ QFE  NK   TKEIY H TCATDT N+QFVFDAVTDVII NNL+ 
Sbjct: 261 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 320
Query: 68  CGLY 71
           CGL+
Sbjct: 321 CGLF 324

>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco Motif Of Rgs14 Length = 325

Iteration: 1
 Score = 92.0 bits (227), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EAAAYIQ QFE  NK   TKEIY H TCATDT N+QFVFDAVTDVII NNL+ 
Sbjct: 262 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 321
Query: 68  CGLY 71
           CGL+
Sbjct: 322 CGLF 325

>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity For The Rgs14 Goloco Motif. Length = 328

Iteration: 1
 Score = 92.0 bits (227), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EAAAYIQ QFE  NK   TKEIY H TCATDT N+QFVFDAVTDVII NNL+ 
Sbjct: 265 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 324
Query: 68  CGLY 71
           CGL+
Sbjct: 325 CGLF 328

>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound To Alf4 And Gdp Length = 356

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EAAAYIQ QFE  NK   TKEIY H TCATDT N+QFVFDAVTDVII NNL  
Sbjct: 293 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLPD 352
Query: 68  CGLY 71
           CGL+
Sbjct: 353 CGLF 356

>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double Mutant I56cQ333C Length = 354

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EAAAYIQ QFE  NK   TKEIY H TCATDT N+ FVFDAVTDVII NNL+ 
Sbjct: 291 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVCFVFDAVTDVIIKNNLKD 350
Query: 68  CGLY 71
           CGL+
Sbjct: 351 CGLF 354

>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs8 And Activated Gi Alpha 3 Length = 350

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLR 66
           +G+  Y EAAAYIQ QFE  N+   TKEIY H TCATDT N+QFVFDAVTDVII NNL+
Sbjct: 290 TGSNTYEEAAAYIQCQFEDLNRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 348

>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide Insights Into The Mechanism Of G Protein Activation. Length = 356

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQF-EAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EA  YI+ QF E   +   KEIY HMTCATDT N++FVFDAVTD+II  NL+ 
Sbjct: 293 AGSNTYEEAGNYIKVQFLELNMRRDVKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKD 352
Query: 68  CGLY 71
           CGL+
Sbjct: 353 CGLF 356

>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)] Length = 325

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQF-EAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EA  YI+ QF E   +   KEIY HMTCATDT N++FVFDAVTD+II  NL+ 
Sbjct: 262 AGSNTYEEAGNYIKVQFLELNMRRDVKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKD 321
Query: 68  CGLY 71
           CGL+
Sbjct: 322 CGLF 325

>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha Complexed With Gtp Gamma S Length = 324

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQF-EAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G   Y +A  YI+ QF E   +   KEIY HMTCATDT N++FVFDAVTD+II  NL+ 
Sbjct: 261 NGPNTYEDAGNYIKVQFLELNMRRDVKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKD 320
Query: 68  CGLY 71
           CGL+
Sbjct: 321 CGLF 324

>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 350

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 9   SGAQEYGEAAAYIQAQF-EAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
           +G+  Y EA  YI+ QF E   +   KEIY H TCATDT N++FVFDAVTD+II  NL+ 
Sbjct: 287 AGSNTYEEAGNYIKVQFLELNXRRDVKEIYSHXTCATDTQNVKFVFDAVTDIIIKENLKD 346
Query: 68  CGLY 71
           CGL+
Sbjct: 347 CGLF 350

>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit Length = 315

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/56 (69%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIAN 63
           +G+  Y EAAAYIQ QFE  NK   TKEIY H TC+TDT N+QFVFDAVTDVII N
Sbjct: 260 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCSTDTKNVQFVFDAVTDVIIKN 315

>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide- State-selective Peptide: Minimal Determinants For Recognizing The Active Form Of A G Protein Alpha Subunit Length = 313

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 42/54 (77%), Gaps = 1/54 (1%)
Query: 9   SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVII 61
           +G+  Y EAAAYIQ QFE  NK   TKEIY H TCATDT N+QFVFDAVTDVII
Sbjct: 259 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 312

>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2 (rgs2) In Complex With Murine Galpha-q(r183c) Length = 347

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 3   YFTELLSGAQEYGEAA-AYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVII 61
           YF E   G Q   +AA  +I   F   N  + K IY H TCATDT NI+FVF AV D I+
Sbjct: 279 YFPEY-DGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 337
Query: 62  ANNLR 66
             NL+
Sbjct: 338 QLNLK 342

>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 353

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 3   YFTELLSGAQEYGEAA-AYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVII 61
           YF E   G Q   +AA  +I   F   N  + K IY H TCATDT NI+FVF AV D I+
Sbjct: 285 YFPEY-DGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 343
Query: 62  ANNLR 66
             NL+
Sbjct: 344 QLNLK 348

>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma In Complex With An Inhibitor Ym-254890 Length = 355

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 3   YFTELLSGAQEYGEAA-AYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVII 61
           YF E   G Q   +AA  +I   F   N  + K IY H TCATDT NI+FVF AV D I+
Sbjct: 287 YFPEY-DGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 345
Query: 62  ANNLR 66
             NL+
Sbjct: 346 QLNLK 350

>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its Effector Phospholipase C Beta 3 Length = 327

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 3   YFTELLSGAQEYGEAA-AYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVII 61
           YF E   G Q   +AA  +I   F   N  + K IY H TCATDT NI+FVF AV D I+
Sbjct: 259 YFPEY-DGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 317
Query: 62  ANNLR 66
             NL+
Sbjct: 318 QLNLK 322

>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length Human Plcbeta3 Length = 353

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 3   YFTELLSGAQEYGEAA-AYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVII 61
           YF E   G Q   +AA  +I   F   N  + K IY H TCATDT NI+FVF AV D I+
Sbjct: 285 YFPEY-DGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 343
Query: 62  ANNLR 66
             NL+
Sbjct: 344 QLNLK 348

>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+ And Alf4- Length = 359

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 2   KYFTELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVII 61
           K+F +         +   Y+   F+ K ++ +K ++ H T A DT NI+FVF AV D I+
Sbjct: 290 KHFPDFKGDPHRLEDVQRYLVQCFDRKRRNRSKPLFHHFTTAIDTENIRFVFHAVKDTIL 349
Query: 62  ANNLR 66
             NL+
Sbjct: 350 QENLK 354

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	71
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	8e-27
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	2e-23
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	7e-23
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	3e-21
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	1e-20

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327

 Score = 98.2 bits (244), Expect = 8e-27
 Identities = 29/69 (42%), Positives = 36/69 (52%)

Query: 2   KYFTELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVII 61
            YF E     ++   A  +I   F   N  + K IY H TCATDT NI+FVF AV D I+
Sbjct: 258 DYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 317

Query: 62  ANNLRGCGL 70
             NL+   L
Sbjct: 318 QLNLKEYNL 326

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362

 Score = 89.4 bits (221), Expect = 2e-23
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 2   KYFTELLSGAQEYGEAAAYIQAQFEAKNKS-TTKEIYCHMTCATDTNNIQFVFDAVTDVI 60
            YF E         +   ++   F  K +    + +Y H T A +T NI+ VF  V D I
Sbjct: 292 DYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 351

Query: 61  IANNLRGCGL 70
           + +NL+   L
Sbjct: 352 LHDNLKQLML 361

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354

 Score = 87.9 bits (217), Expect = 7e-23
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 2   KYFTE---LLSGAQEYGEAAAYIQAQFEAKNKSTT------KEIYCHMTCATDTNNIQFV 52
           ++F +   + SG QE   A  +++ +FE      T      +    + T A D   ++  
Sbjct: 276 EWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKT 335

Query: 53  FDAVTDVIIANNLRGCGL 70
           F  V + +   NL   GL
Sbjct: 336 FKLVDETLRRRNLLEAGL 353

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353

 Score = 83.6 bits (206), Expect = 3e-21
 Identities = 46/71 (64%), Positives = 52/71 (73%), Gaps = 2/71 (2%)

Query: 2   KYFTELLSGAQEYGEAAAYIQAQFEAKNK-STTKEIYCHMTCATDTNNIQFVFDAVTDVI 60
             + E  +G+  Y EAAAYIQ QFE  NK   TKEIY H TCATDT N+QFVFDAVTDVI
Sbjct: 284 ICYPEY-AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 342

Query: 61  IANNLRGCGLY 71
           I NNL+ CGL+
Sbjct: 343 IKNNLKDCGLF 353

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402

 Score = 82.2 bits (202), Expect = 1e-20
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 12  QEYGEAAAYIQAQFEAKNKSTT---KEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
                A  +I+ +F   + ++       Y H TCA DT NI+ VF+   D+I   +LR  
Sbjct: 332 PRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQY 391

Query: 69  GLY 71
            L 
Sbjct: 392 ELL 394

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	71
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.8
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.78
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.58
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.57
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.54
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.5
2dce_A	111	KIAA1915 protein; swirm domain, structural genomic	86.15
2fq3_A	104	Transcription regulatory protein SWI3; four-helix	80.92

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.80  E-value=8.8e-20  Score=126.96  Aligned_cols=69  Identities=43%  Similarity=0.692  Sum_probs=61.1

Q ss_pred             cccCCCCCCC-CChHHHHHHHHHHHHhhccCCCCCeeEeecccccCccHHHHHHHHHHHHHHhhhhhcCCC
Q psy6616           2 KYFTELLSGA-QEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGCGLY   71 (71)
Q Consensus         2 ~~Fp~~y~G~-~~~~~~~~fi~~kF~~~~~~~~r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl~~~~l~   71 (71)
                      +|||+ |+|+ +++++|.+||+++|.++++.+.+.+|+|+|||+||+||+.||.+|.++|++.||+++||+
T Consensus       258 ~~fp~-y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l~~~~l~  327 (327)
T 3ohm_A          258 DYFPE-YDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV  327 (327)
T ss_dssp             GTCTT-CCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred             hhchh-ccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHhHHhcCCC
Confidence            59999 9996 799999999999999998777899999999999999999999999999999999999974

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.78  E-value=1.6e-19  Score=126.34  Aligned_cols=68  Identities=37%  Similarity=0.483  Sum_probs=61.0

Q ss_pred             cccCCCCCCCCChHHHHHHHHHHH------HhhccCCC-----------CCeeEeecccccCccHHHHHHHHHHHHHHhh
Q psy6616           2 KYFTELLSGAQEYGEAAAYIQAQF------EAKNKSTT-----------KEIYCHMTCATDTNNIQFVFDAVTDVIIANN   64 (71)
Q Consensus         2 ~~Fp~~y~G~~~~~~~~~fi~~kF------~~~~~~~~-----------r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~n   64 (71)
                      +|||+ |+|++++++|.+||+++|      .++++.+.           |.+|+|+|||+||+||+.||++|+++|++ |
T Consensus       252 ~~fp~-y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~-~  329 (340)
T 4fid_A          252 TIFPE-YTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK-N  329 (340)
T ss_dssp             GTCTT-CCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH-H
T ss_pred             Hhhhh-hcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH-H
Confidence            68999 999989999999999999      77766544           78999999999999999999999999999 9


Q ss_pred             hhhcCCC
Q psy6616          65 LRGCGLY   71 (71)
Q Consensus        65 l~~~~l~   71 (71)
                      |++.||+
T Consensus       330 l~~~~~~  336 (340)
T 4fid_A          330 MAANGKM  336 (340)
T ss_dssp             HHHTTCC
T ss_pred             HHHcCCC
Confidence            9999874

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.58  E-value=3.3e-15  Score=104.74  Aligned_cols=68  Identities=29%  Similarity=0.579  Sum_probs=58.2

Q ss_pred             cccCCCCCCC-CChHHHHHHHHHHHHhhccCC-CCCeeEeecccccCccHHHHHHHHHHHHHHhhhhhcCCC
Q psy6616           2 KYFTELLSGA-QEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGCGLY   71 (71)
Q Consensus         2 ~~Fp~~y~G~-~~~~~~~~fi~~kF~~~~~~~-~r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl~~~~l~   71 (71)
                      +|||+ |+|+ .+++++.+|++++|.++++.+ .+.+|+|+|||+|++||+.+|+.|.++|++.||++ ||+
T Consensus       292 ~~fp~-y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l~~-~l~  361 (362)
T 1zcb_A          292 DYFLE-FEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQ-LML  361 (362)
T ss_dssp             GTCTT-CCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             hcCcc-ccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHHHh-hcc
Confidence            58999 9997 899999999999999987643 67899999999999999999999999999999999 874

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.57  E-value=1.4e-15  Score=108.22  Aligned_cols=69  Identities=32%  Similarity=0.504  Sum_probs=59.1

Q ss_pred             cccCCCCCC------------C-CChHHHHHHHHHHHHhhccC---CCCCeeEeecccccCccHHHHHHHHHHHHHHhhh
Q psy6616           2 KYFTELLSG------------A-QEYGEAAAYIQAQFEAKNKS---TTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNL   65 (71)
Q Consensus         2 ~~Fp~~y~G------------~-~~~~~~~~fi~~kF~~~~~~---~~r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl   65 (71)
                      +|||+ |+|            + +++++|.+||+++|.++++.   ..+.+|+|+|||+|++||+.||.+|.++|++.||
T Consensus       310 ~~fp~-y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~~~l  388 (402)
T 1azs_C          310 DYFPE-FARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHL  388 (402)
T ss_dssp             GTCGG-GGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccc-ccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHHHHH
Confidence            68999 974            2 24788999999999987642   2468999999999999999999999999999999


Q ss_pred             hhcCCC
Q psy6616          66 RGCGLY   71 (71)
Q Consensus        66 ~~~~l~   71 (71)
                      +.+||+
T Consensus       389 ~~~~~~  394 (402)
T 1azs_C          389 RQYELL  394 (402)
T ss_dssp             HHHHC-
T ss_pred             HHhcCc
Confidence            998875

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.54  E-value=1.3e-14  Score=101.36  Aligned_cols=69  Identities=67%  Similarity=1.054  Sum_probs=58.0

Q ss_pred             cccCCCCCCCCChHHHHHHHHHHHHhhccC-CCCCeeEeecccccCccHHHHHHHHHHHHHHhhhhhcCCC
Q psy6616           2 KYFTELLSGAQEYGEAAAYIQAQFEAKNKS-TTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGCGLY   71 (71)
Q Consensus         2 ~~Fp~~y~G~~~~~~~~~fi~~kF~~~~~~-~~r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl~~~~l~   71 (71)
                      +|||+ |+|+.+.+++.+|++.+|.++++. ..+.+|.|.|||+|++||+.+|+.|.+.|++.||+++||+
T Consensus       284 ~~fp~-~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l~~~~l~  353 (353)
T 1cip_A          284 ICYPE-YAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF  353 (353)
T ss_dssp             GTCTT-CCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-------
T ss_pred             hcccc-cCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHHHHcCCC
Confidence            58999 999999999999999999998764 3688999999999999999999999999999999999985

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.50  E-value=1.7e-14  Score=100.91  Aligned_cols=69  Identities=25%  Similarity=0.392  Sum_probs=57.7

Q ss_pred             cccCCCCC----CCCChHHHHHHHHHHHHhh---ccCC---CCCeeEeecccccCccHHHHHHHHHHHHHHhhhhhcCCC
Q psy6616           2 KYFTELLS----GAQEYGEAAAYIQAQFEAK---NKST---TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGCGLY   71 (71)
Q Consensus         2 ~~Fp~~y~----G~~~~~~~~~fi~~kF~~~---~~~~---~r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl~~~~l~   71 (71)
                      +|||+ |.    |++++++|.+|++++|.++   +..+   .+.+|+|.|||+|++||+.+|+.|.+.|++.||+++||+
T Consensus       276 ~~fp~-y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~~~l~~~~l~  354 (354)
T 2xtz_A          276 EWFRD-YQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNLLEAGLL  354 (354)
T ss_dssp             GGGTT-CCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             ccccc-cccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHHHHHHhccCC
Confidence            36999 86    5678999999999999887   3222   467899999999999999999999999999999999985

>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.15  E-value=0.46  Score=28.25  Aligned_cols=49  Identities=24%  Similarity=0.331  Sum_probs=29.6

Q ss_pred             cccCCCCCCC-----CChHHHHHHHHHHHHhhccCCCCCeeEeeccc-------ccCccHHHHHHH
Q psy6616           2 KYFTELLSGA-----QEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCA-------TDTNNIQFVFDA   55 (71)
Q Consensus         2 ~~Fp~~y~G~-----~~~~~~~~fi~~kF~~~~~~~~r~iy~h~T~A-------tDt~ni~~vf~~   55 (71)
                      ++|||||.|.     .-|.....+|.++|..-   +.  .|.-+|.|       -|...|..|++-
T Consensus        33 ~~lPefF~g~~~ktpe~Yl~iRN~iI~~yr~n---p~--~yLT~t~~rr~L~~~gDv~~i~RVh~F   93 (111)
T 2dce_A           33 QAIPEFFEGRQAKTPERYLKIRNYILDQWEIC---KP--KYLNKTSVRPGLKNCGDVNCIGRIHTY   93 (111)
T ss_dssp             TTSGGGGSCCSSCCHHHHHHHHHHHHHHHHHH---TT--SCCCGGGTTTTTSSSSCHHHHHHHHHH
T ss_pred             HhChHHhcCCcccCHHHHHHHHHHHHHHHHhC---Cc--ceeeHHHHHHhcccccCHHHHHHHHHH
Confidence            5799966763     23666677888888752   22  24444544       466666666554

>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18

Probab=80.92  E-value=0.26  Score=29.16  Aligned_cols=26  Identities=8%  Similarity=0.268  Sum_probs=17.4

Q ss_pred             cccCCCCCCC--C----ChHHHHHHHHHHHHh
Q psy6616           2 KYFTELLSGA--Q----EYGEAAAYIQAQFEA   27 (71)
Q Consensus         2 ~~Fp~~y~G~--~----~~~~~~~fi~~kF~~   27 (71)
                      ++|||||+|.  .    .|.....+|.++|..
T Consensus        31 ~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~   62 (104)
T 2fq3_A           31 QSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRL   62 (104)
T ss_dssp             HHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHChHHhcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence            4799977763  1    255666788888864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	71
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	1e-20
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-19
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	2e-18
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	1e-15

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.0 bits (191), Expect = 1e-20
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 2   KYFTELLSGAQEYGEAAAYIQAQFEAKNK-STTKEIYCHMTCATDTNNIQFVFDAVTDVI 60
            YF E         +   ++   F  K +    + +Y H T A +T NI+ VF  V D I
Sbjct: 135 DYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 194

Query: 61  IANNLR 66
           + +NL+
Sbjct: 195 LHDNLK 200

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.0 bits (183), Expect = 2e-19
 Identities = 28/65 (43%), Positives = 35/65 (53%)

Query: 2   KYFTELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVII 61
            YF E     ++   A  +I   F   N  + K IY H TCATDT NI+FVF AV D I+
Sbjct: 136 DYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 195

Query: 62  ANNLR 66
             NL+
Sbjct: 196 QLNLK 200

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.2 bits (179), Expect = 2e-18
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 12  QEYGEAAAYIQAQFEAKNKSTT---KEIYCHMTCATDTNNIQFVFDAVTDVIIANNLR 66
                A  +I+ +F   + ++       Y H TCA DT NI+ VF+   D+I   +LR
Sbjct: 162 PRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 219

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.0 bits (157), Expect = 1e-15
 Identities = 41/56 (73%), Positives = 43/56 (76%), Gaps = 1/56 (1%)

Query: 10  GAQEYGEAAAYIQAQFEAKNKS-TTKEIYCHMTCATDTNNIQFVFDAVTDVIIANN 64
           G+  Y EAAAYIQ QFE  NK   TKEIY H TCATDT N+QFVFDAVTDVII NN
Sbjct: 140 GSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 195

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	71
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.79
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.77
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.58
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.49

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=3e-20  Score=119.90  Aligned_cols=66  Identities=32%  Similarity=0.496  Sum_probs=57.1

Q ss_pred             cccCCCCCCC-------------CChHHHHHHHHHHHHhhcc---CCCCCeeEeecccccCccHHHHHHHHHHHHHHhhh
Q psy6616           2 KYFTELLSGA-------------QEYGEAAAYIQAQFEAKNK---STTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNL   65 (71)
Q Consensus         2 ~~Fp~~y~G~-------------~~~~~~~~fi~~kF~~~~~---~~~r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl   65 (71)
                      +|||+ |.|+             .++.+|.+||+++|.++++   +++|.+|+|+||||||+||+.||++|+|+|+++||
T Consensus       140 ~~f~~-~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~l  218 (221)
T d1azta2         140 DYFPE-FARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHL  218 (221)
T ss_dssp             HHCGG-GGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HhCcc-ccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHHh
Confidence            58999 8642             2477899999999998753   45789999999999999999999999999999999


Q ss_pred             hhc
Q psy6616          66 RGC   68 (71)
Q Consensus        66 ~~~   68 (71)
                      ++.
T Consensus       219 ~~~  221 (221)
T d1azta2         219 RQY  221 (221)
T ss_dssp             TTC
T ss_pred             hcC
Confidence            863

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=4.2e-19  Score=110.36  Aligned_cols=64  Identities=31%  Similarity=0.630  Sum_probs=56.7

Q ss_pred             cccCCCCCC-CCChHHHHHHHHHHHHhhcc-CCCCCeeEeecccccCccHHHHHHHHHHHHHHhhhh
Q psy6616           2 KYFTELLSG-AQEYGEAAAYIQAQFEAKNK-STTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLR   66 (71)
Q Consensus         2 ~~Fp~~y~G-~~~~~~~~~fi~~kF~~~~~-~~~r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl~   66 (71)
                      ++||+ |.| +++.++|.+||.++|.+... ..+|++|+|+|||+|++||+.||++|+|+|+++||+
T Consensus       135 ~~f~~-~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~l~  200 (200)
T d1zcba2         135 DYFLE-FEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLK  200 (200)
T ss_dssp             GTCTT-CCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhCcc-ccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHhcC
Confidence            58999 887 48999999999999998754 457899999999999999999999999999999996

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=2.1e-15  Score=92.77  Aligned_cols=64  Identities=45%  Similarity=0.736  Sum_probs=58.8

Q ss_pred             cccCCCCCCC-CChHHHHHHHHHHHHhhccCCCCCeeEeecccccCccHHHHHHHHHHHHHHhhhh
Q psy6616           2 KYFTELLSGA-QEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLR   66 (71)
Q Consensus         2 ~~Fp~~y~G~-~~~~~~~~fi~~kF~~~~~~~~r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl~   66 (71)
                      +++|+ +.++ ++...+.+||..+|.+.+...+|.+|+|+|||.|++||+.||++|+++|++.||+
T Consensus       136 ~~~~~-~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~nl~  200 (200)
T d2bcjq2         136 DYFPE-YDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLK  200 (200)
T ss_dssp             HHSTT-CCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             Hhccc-ccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHhcC
Confidence            36888 7764 7899999999999999988888999999999999999999999999999999986

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=3.8e-14  Score=86.70  Aligned_cols=62  Identities=68%  Similarity=0.993  Sum_probs=56.6

Q ss_pred             cccCCCCCCCCChHHHHHHHHHHHHhhcc-CCCCCeeEeecccccCccHHHHHHHHHHHHHHhh
Q psy6616           2 KYFTELLSGAQEYGEAAAYIQAQFEAKNK-STTKEIYCHMTCATDTNNIQFVFDAVTDVIIANN   64 (71)
Q Consensus         2 ~~Fp~~y~G~~~~~~~~~fi~~kF~~~~~-~~~r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~n   64 (71)
                      .+||+ +.|+++.+++..++..+|.+.+. ...|.+|+|+|||+|++||+.+|..|+++|+++|
T Consensus       133 ~~~~~-~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~n  195 (195)
T d1svsa1         133 ICYPE-YAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN  195 (195)
T ss_dssp             GTCTT-CCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhh-hcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhcC
Confidence            47899 98889999999999999998864 4578999999999999999999999999999987