Psyllid ID: psy6628

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MSVVHNIHRVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEccccccccccccccccEccccHHHHHHHHcccccccccccccccccccccccccccHHHHHHcHHHHccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MSVVHNIHRVVFTCQVCSKIFSYENGLKAHvrnkhgsseerprfkcegrgecdrvfTTRNMLNIHikrdhqkekpyqcsqcsksffskydhkihsrvhtgekpyacefcpltfrhsshlFRHRRSLHQMYEQ
Flexible Loop (DISEMBL)
msvvhnihrvvFTCQVCSKIFSYENGLKahvrnkhgsseerprfkcegrgecdrvfTTRNMLNIHikrdhqkekpyQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ
Low Complexity Region (SEG)
MSVVHNIHRVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTfrhsshlfrhrrslhQMYEQ
Disordered region (IsUnstruct)
**VVHNIHRVVFTCQVCSKIFSYENGLKAH***************CEGRGECDRVFTTRNMLNIHIKRDH***KPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFR***********
Disordered Region (DISOPRED)
MSVVHNIHRVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLF************
Disordered Region (DISEMBL)
MSVVHNIHRVVFTCQVCSKIFSYENGLKAHV**************CEGRGECDRVFTTRNMLNIHIKRD*********SQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ
Disordered Region (DISPRO)
**V**NIHRVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLH*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVVHNIHRVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q14588	700	Zinc finger protein 234 O	yes	N/A	0.878	0.165	0.423	6e-18
Q86WZ6	799	Zinc finger protein 227 O	no	N/A	0.795	0.131	0.469	1e-17
Q9NYT6	803	Zinc finger protein 226 O	no	N/A	0.848	0.139	0.428	3e-17
Q32M78	642	Zinc finger protein 699 O	no	N/A	0.818	0.168	0.413	3e-17
Q1H9T6	681	Zinc finger and BTB domai	no	N/A	0.840	0.162	0.415	1e-16
Q9UJW7	825	Zinc finger protein 229 O	no	N/A	0.795	0.127	0.447	1e-16
A1YG60	578	Zinc finger protein 192 O	N/A	N/A	0.780	0.178	0.408	2e-16
A2T736	578	Zinc finger protein 192 O	no	N/A	0.780	0.178	0.408	2e-16
Q5R633	688	Zinc finger and BTB domai	no	N/A	0.840	0.161	0.415	2e-16
P10074	688	Zinc finger and BTB domai	no	N/A	0.840	0.161	0.415	2e-16

>sp|Q14588|ZN234_HUMAN Zinc finger protein 234 OS=Homo sapiens GN=ZNF234 PE=2 SV=3

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/130 (42%), Positives = 73/130 (56%), Gaps = 14/130 (10%)

Query: 1   MSVVHNIHRVVFT------CQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDR 54
           M + + +H VV T      C+VC K F   + LK H++     S ++P FKCE   EC +
Sbjct: 411 MKIHYQVHLVVHTGEKPYKCEVCGKAFRQSSYLKIHLK---AHSVQKP-FKCE---ECGQ 463

Query: 55  VFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFR 114
            F   + L IH +  H  EKPY+C +C K F  + D KIH R+HTGEKPY CE C   F 
Sbjct: 464 GFNQSSRLQIH-QLIHTGEKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFS 522

Query: 115 HSSHLFRHRR 124
            +SHL  H+R
Sbjct: 523 QASHLLTHQR 532

May be involved in transcriptional regulation.
Homo sapiens (taxid: 9606)

>sp|Q86WZ6|ZN227_HUMAN Zinc finger protein 227 OS=Homo sapiens GN=ZNF227 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 66/113 (58%), Gaps = 8/113 (7%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
           + C VC K FSY + LK H     G   E+P +KCE   EC + F+ R+ L+ H +R H 
Sbjct: 548 YRCDVCGKDFSYSSNLKLHQVIHTG---EKP-YKCE---ECGKGFSWRSNLHAH-QRVHS 599

Query: 72  KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
            EKPY+C QC KSF    D ++H RVHTGEKPY C  C   F  SS L  H+R
Sbjct: 600 GEKPYKCEQCDKSFSQAIDFRVHQRVHTGEKPYKCGVCGKGFSQSSGLQSHQR 652

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q9NYT6|ZN226_HUMAN Zinc finger protein 226 OS=Homo sapiens GN=ZNF226 PE=1 SV=2

 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 72/126 (57%), Gaps = 14/126 (11%)

Query: 5   HNIHRVVFT------CQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTT 58
           + +H VV T      C++C K FS  + L+ H +     S E+P FKCE   EC + F  
Sbjct: 518 YQVHLVVHTGEKPYKCEICGKGFSQSSYLQIHQK---AHSIEKP-FKCE---ECGQGFNQ 570

Query: 59  RNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSH 118
            + L IH +  H  EKPY+C +C K F  + D KIH R+HTGEKPY CE C   FR +S+
Sbjct: 571 SSRLQIH-QLIHTGEKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFRQASN 629

Query: 119 LFRHRR 124
           L  H+R
Sbjct: 630 LLAHQR 635

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q32M78|ZN699_HUMAN Zinc finger protein 699 OS=Homo sapiens GN=ZNF699 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 68/116 (58%), Gaps = 8/116 (6%)

Query: 9   RVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKR 68
           ++ + C+ C K FS  + L  H+R   G   E+P ++C+   EC + F + + L +HI R
Sbjct: 472 KIQYECKECGKTFSRSSSLTEHLRTHSG---EKP-YECK---ECGKAFISSSHLTVHI-R 523

Query: 69  DHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
            H  EKPY+C +C K+F      +IH R HTGEKPY C+ C   FRHSS+L  H R
Sbjct: 524 THTGEKPYECKKCGKAFIYPSALRIHMRTHTGEKPYECKECGKAFRHSSYLTVHAR 579

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q1H9T6|ZBT48_MOUSE Zinc finger and BTB domain-containing protein 48 OS=Mus musculus GN=Zbtb48 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 66/118 (55%), Gaps = 7/118 (5%)

Query: 11  VFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDH 70
           +F C+ C    S  NGL+ H++ KH    ERP + CE    C   FT +  LN+H+ R H
Sbjct: 428 LFVCEECGHRASSRNGLQMHIKAKH--RNERP-YVCEF---CSHAFTQKANLNMHL-RTH 480

Query: 71  QKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQ 128
             EKP+QC  C K+F ++     H+R HTGE+P++CEFC   F     L RH  S HQ
Sbjct: 481 TGEKPFQCHLCGKTFRTQASLDKHNRTHTGERPFSCEFCEQRFTEKGPLLRHVASRHQ 538

Binds to and regulates the J and/or S elements in MHC II promoter.

Mus musculus (taxid: 10090)

>sp|Q9UJW7|ZN229_HUMAN Zinc finger protein 229 OS=Homo sapiens GN=ZNF229 PE=2 SV=3

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/114 (44%), Positives = 66/114 (57%), Gaps = 9/114 (7%)

Query: 11  VFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDH 70
           ++ C VC K FSY +GL  H R   G   E+P +KCE    C + F   + L+IH +R H
Sbjct: 516 LYKCNVCGKSFSYSSGLLMHQRLHTG---EKP-YKCE----CGKSFGRSSDLHIH-QRVH 566

Query: 71  QKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
             EKPY+CS+C K F    D   H RVHTGE+PY C+ C   F +SS L  H+R
Sbjct: 567 TGEKPYKCSECGKGFRRNSDLHSHQRVHTGERPYVCDVCGKGFIYSSDLLIHQR 620

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|A1YG60|ZN192_PANPA Zinc finger protein 192 OS=Pan paniscus GN=ZNF192 PE=3 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 12/115 (10%)

Query: 12  FTCQVCSKIFSYENGLKAH--VRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD 69
           + C VC K FSY + L +H  + NK        R+ C+   EC + F+    L +H +R 
Sbjct: 350 YQCNVCGKAFSYRSALLSHQDIHNK------VKRYHCK---ECGKAFSQNTGLILH-QRI 399

Query: 70  HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
           H  EKPYQC+QC K+F       +H R+H+GE+PY C  C   F HSSHL  H+R
Sbjct: 400 HTGEKPYQCNQCGKAFSQSAGLILHQRIHSGERPYECNECGKAFSHSSHLIGHQR 454

May be involved in transcriptional regulation.

Pan paniscus (taxid: 9597)

>sp|A2T736|ZN192_PANTR Zinc finger protein 192 OS=Pan troglodytes GN=ZNF192 PE=3 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 12/115 (10%)

Query: 12  FTCQVCSKIFSYENGLKAH--VRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD 69
           + C VC K FSY + L +H  + NK        R+ C+   EC + F+    L +H +R 
Sbjct: 350 YQCNVCGKAFSYRSALLSHQDIHNK------VKRYHCK---ECGKAFSQNTGLILH-QRI 399

Query: 70  HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
           H  EKPYQC+QC K+F       +H R+H+GE+PY C  C   F HSSHL  H+R
Sbjct: 400 HTGEKPYQCNQCGKAFSQSAGLILHQRIHSGERPYECNECGKAFSHSSHLIGHQR 454

May be involved in transcriptional regulation.

Pan troglodytes (taxid: 9598)

>sp|Q5R633|ZBT48_PONAB Zinc finger and BTB domain-containing protein 48 OS=Pongo abelii GN=ZBTB48 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 65/118 (55%), Gaps = 7/118 (5%)

Query: 11  VFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDH 70
           +F C+ C    S  NGL+ H++ KH    ERP   CE    C   FT +  LN+H+ R H
Sbjct: 435 LFVCEECGHRASSRNGLQMHIKAKH--RNERPHV-CEF---CSHAFTQKANLNMHL-RTH 487

Query: 71  QKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQ 128
             EKP+QC  C K+F ++     H+R HTGE+P++CEFC   F     L RH  S HQ
Sbjct: 488 TGEKPFQCHLCGKTFRTQASLDKHNRTHTGERPFSCEFCEQRFTEKGPLLRHVASRHQ 545

Binds to and regulates the J and/or S elements in MHC II promoter.

Pongo abelii (taxid: 9601)

>sp|P10074|ZBT48_HUMAN Zinc finger and BTB domain-containing protein 48 OS=Homo sapiens GN=ZBTB48 PE=1 SV=2

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 65/118 (55%), Gaps = 7/118 (5%)

Query: 11  VFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDH 70
           +F C+ C    S  NGL+ H++ KH    ERP   CE    C   FT +  LN+H+ R H
Sbjct: 435 LFVCEECGHRASSRNGLQMHIKAKH--RNERPHV-CEF---CSHAFTQKANLNMHL-RTH 487

Query: 71  QKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQ 128
             EKP+QC  C K+F ++     H+R HTGE+P++CEFC   F     L RH  S HQ
Sbjct: 488 TGEKPFQCHLCGKTFRTQASLDKHNRTHTGERPFSCEFCEQRFTEKGPLLRHVASRHQ 545

Binds to and regulates the J and/or S elements in MHC II promoter.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
328778727	522	PREDICTED: zinc finger protein 510-like	0.795	0.201	0.427	3e-19
340717368	832	PREDICTED: hypothetical protein LOC10064	0.795	0.126	0.418	7e-19
350413353	832	PREDICTED: hypothetical protein LOC10074	0.795	0.126	0.418	8e-19
380015049	622	PREDICTED: zinc finger protein 107-like	0.795	0.168	0.435	9e-19
383856197	558	PREDICTED: zinc finger protein 675-like	0.795	0.188	0.444	2e-18
332028893	950	Zinc finger protein 358 [Acromyrmex echi	0.893	0.124	0.393	1e-17
327286356	476	PREDICTED: zinc finger protein 135-like	0.803	0.222	0.456	7e-17
398880228	896	RHS repeat-associated core domain protei	0.818	0.120	0.413	1e-16
328702651	693	PREDICTED: zinc finger protein 91-like [	0.803	0.152	0.447	1e-16
366039961	581	zinc-finger protein 80-like [Mus musculu	0.803	0.182	0.447	1e-16

>gi|328778727|ref|XP_003249539.1| PREDICTED: zinc finger protein 510-like [Apis mellifera]

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 12/117 (10%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERP----RFKCEGRGECDRVFTTRNMLNIHIK 67
           F C+ C   F++++ L  H+ N H     RP    +F C+    C++++ T + +N H+K
Sbjct: 411 FHCKDCKISFAWKSTLNKHIANNH-----RPDGPQKFACDI---CNKIYNTSSQVNEHVK 462

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
           RDH K++ + CSQC KSFF KYD KIH R+HT E+PY C  C   F H SH+ RH R
Sbjct: 463 RDHLKQRNHVCSQCGKSFFKKYDLKIHGRIHTDERPYVCRACGKRFHHRSHIIRHER 519

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717368|ref|XP_003397156.1| PREDICTED: hypothetical protein LOC100647221 [Bombus terrestris]

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 72/117 (61%), Gaps = 12/117 (10%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERP----RFKCEGRGECDRVFTTRNMLNIHIK 67
           F C+ C   F++++ L  H+ N H     RP    +F C+    C++++ T + +N H+K
Sbjct: 721 FHCKDCKMSFAWKSTLNKHIANNH-----RPDGPQKFACDI---CNKIYNTSSQVNEHVK 772

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
           RDH K++ + CSQC KSFF KYD K+H+R+HT E+PY C  C   F H SH+ RH R
Sbjct: 773 RDHLKQRNHVCSQCGKSFFKKYDLKMHNRIHTDERPYVCRACGKRFHHRSHIVRHER 829

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413353|ref|XP_003489968.1| PREDICTED: hypothetical protein LOC100748408 [Bombus impatiens]

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 72/117 (61%), Gaps = 12/117 (10%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERP----RFKCEGRGECDRVFTTRNMLNIHIK 67
           F C+ C   F++++ L  H+ N H     RP    +F C+    C++++ T + +N H+K
Sbjct: 721 FHCKDCKMSFAWKSTLNKHIANNH-----RPDGPQKFACDI---CNKIYNTSSQVNEHVK 772

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
           RDH K++ + CSQC KSFF KYD K+H+R+HT E+PY C  C   F H SH+ RH R
Sbjct: 773 RDHLKQRNHVCSQCGKSFFKKYDLKMHNRIHTDERPYVCRACGKRFHHRSHIVRHER 829

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015049|ref|XP_003691524.1| PREDICTED: zinc finger protein 107-like [Apis florea]

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 73/117 (62%), Gaps = 12/117 (10%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERP----RFKCEGRGECDRVFTTRNMLNIHIK 67
           F C+ C   F++++ L     NKH +S  RP    +F C+    C++++ T + +N H+K
Sbjct: 511 FHCKDCKISFAWKSTL-----NKHIASNHRPDGPQKFACDI---CNKIYNTSSQVNEHVK 562

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
           RDH K++ + CSQC KSFF KYD KIH+R+HT E+PY C  C   F H SH+ RH R
Sbjct: 563 RDHLKQRNHVCSQCGKSFFKKYDLKIHNRIHTDERPYVCRTCGKRFHHRSHIIRHER 619

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856197|ref|XP_003703596.1| PREDICTED: zinc finger protein 675-like [Megachile rotundata]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 72/117 (61%), Gaps = 12/117 (10%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERP----RFKCEGRGECDRVFTTRNMLNIHIK 67
           F C+ C   F++++ L     NKH +S  RP    RF C+    C ++++T + +N H+K
Sbjct: 447 FHCKECKMSFAWKSTL-----NKHIASNHRPEGPQRFACDI---CKKMYSTSSQVNEHVK 498

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
           RDH KE+ + CS C KSFF KYD KIH+R+HT E+PY C  C   F H SH+ RH R
Sbjct: 499 RDHLKERNHVCSLCGKSFFKKYDLKIHNRIHTDERPYVCRACGKRFHHRSHIIRHER 555

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028893|gb|EGI68915.1| Zinc finger protein 358 [Acromyrmex echinatior]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 73/122 (59%), Gaps = 4/122 (3%)

Query: 4   VHNIHRVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLN 63
           +H   +  F C+ C   F++++ L  H+ N H +S+   +F CE    C +V++T + +N
Sbjct: 781 IHFTDQQKFHCKDCGVSFAWKSTLNKHIANNH-TSDGPQKFVCEI---CPKVYSTLSQVN 836

Query: 64  IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHR 123
            H+KRDH K++ + C  C KSFF ++D K HSR HT E+PY C  C   F H SH+ RH 
Sbjct: 837 EHVKRDHLKQRNHICLHCGKSFFKRFDLKTHSRTHTNERPYVCRVCGKRFHHQSHIIRHE 896

Query: 124 RS 125
           R+
Sbjct: 897 RT 898

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|327286356|ref|XP_003227896.1| PREDICTED: zinc finger protein 135-like [Anolis carolinensis]

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/114 (45%), Positives = 68/114 (59%), Gaps = 8/114 (7%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
           +TCQ C + F++ +GL++H+R   G   ERP +KC    EC + FT    L++H KR H 
Sbjct: 260 YTCQECGQCFTHRSGLRSHLRTHTG---ERP-YKCP---ECGKCFTDTGGLHLH-KRIHT 311

Query: 72  KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRS 125
            EKPY+C +C KSF    D + H R HTGEKPY C  C   F HSS L  H R+
Sbjct: 312 GEKPYKCLECGKSFVQSADLRSHERTHTGEKPYTCLECGQRFTHSSSLRSHERT 365

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|398880228|ref|ZP_10635292.1| RHS repeat-associated core domain protein-containing protein [Pseudomonas sp. GM67] gi|398193833|gb|EJM80926.1| RHS repeat-associated core domain protein-containing protein [Pseudomonas sp. GM67]

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 8/116 (6%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
           ++C++C+K F+ +  LKAH+R   G    +P +KC     C+  F   + L  H+ R H 
Sbjct: 785 YSCELCNKCFAQKGSLKAHMRIHTGV---KP-YKCL---ICEAGFAQSSHLKAHM-RTHT 836

Query: 72  KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLH 127
           +EKPY+CS C  SF  K    IH R HTGEKPY C  C   F H + + RH+RS+H
Sbjct: 837 EEKPYKCSTCVASFARKSVFDIHMRTHTGEKPYVCPTCGTRFSHRNCMLRHQRSIH 892

Source: Pseudomonas sp. GM67

Species: Pseudomonas sp. GM67

Genus: Pseudomonas

Family: Pseudomonadaceae

Order: Pseudomonadales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|328702651|ref|XP_003241968.1| PREDICTED: zinc finger protein 91-like [Acyrthosiphon pisum]

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/114 (44%), Positives = 64/114 (56%), Gaps = 8/114 (7%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
           F C VC K F+  N L  H R   G   E+P F C+    C++ FT  + L  H +R H 
Sbjct: 574 FACDVCEKTFAGSNTLTIHQRTHTG---EKP-FACD---VCEKTFTESSTLTRH-RRTHT 625

Query: 72  KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRS 125
            EKP+ C  C KSF + Y    H R HTGEKPYAC+ C ++F  S HL RHRR+
Sbjct: 626 GEKPFACDVCDKSFATSYTLSNHHRTHTGEKPYACDVCNMSFSQSGHLTRHRRT 679

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|366039961|ref|NP_001242994.1| zinc-finger protein 80-like [Mus musculus]

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/114 (44%), Positives = 69/114 (60%), Gaps = 8/114 (7%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
           F C  C K FS +  L++H+R   G   E+P +KC    +CD+ F+ +  L IHI R H 
Sbjct: 385 FKCNECDKAFSEKGSLQSHIRTHTG---EKP-YKC---NQCDKAFSHKQNLQIHI-RIHT 436

Query: 72  KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRS 125
            EKPY+C+QC K+F  K + +IH R+HTGEKPY C  C   F H  +L  HRR+
Sbjct: 437 GEKPYKCNQCDKAFSYKQNLQIHIRIHTGEKPYKCNQCDKAFLHQGNLQTHRRT 490

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
UNIPROTKB|F1LZ45	381	LOC691254 "Protein LOC691254"	0.681	0.236	0.459	1.1e-18
ZFIN|ZDB-GENE-110914-181	225	si:dkey-262g12.7 "si:dkey-262g	0.681	0.4	0.428	1.4e-18
UNIPROTKB|F1LTL1	455	LOC691254 "Protein LOC691254"	0.681	0.197	0.459	2.2e-18
UNIPROTKB|E2RHJ1	812	ZNF227 "Uncharacterized protei	0.681	0.110	0.469	2.2e-18
UNIPROTKB|B7Z5P9	748	ZNF227 "Zinc finger protein 22	0.681	0.120	0.479	2.5e-18
UNIPROTKB|Q86WZ6	799	ZNF227 "Zinc finger protein 22	0.681	0.112	0.479	2.8e-18
ZFIN|ZDB-GENE-080218-13	260	zgc:175008 "zgc:175008" [Danio	0.681	0.346	0.459	2.8e-18
UNIPROTKB|F1M3A8	353	F1M3A8 "Uncharacterized protei	0.681	0.254	0.448	4.5e-18
ZFIN|ZDB-GENE-110913-98	393	si:dkey-92j16.1 "si:dkey-92j16	0.681	0.229	0.448	4.7e-18
UNIPROTKB|F1LYI4	407	F1LYI4 "Uncharacterized protei	0.681	0.221	0.438	5.4e-18

UNIPROTKB|F1LZ45 LOC691254 "Protein LOC691254" [Rattus norvegicus (taxid:10116)]

 Score = 228 (85.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 45/98 (45%), Positives = 60/98 (61%)

Query:    12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
             + C  C K F+ +  LK H+R   G   E+P +KC    ECD+ F  ++ LNIH +R H 
Sbjct:   159 YKCSECDKCFTEKGTLKRHMRIHTG---EKP-YKCS---ECDKCFRLQSHLNIH-QRIHT 210

Query:    72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
              EKPY+CS+C K F  K + +IH R+HTGEKPY C  C
Sbjct:   211 GEKPYKCSECEKYFTDKCNFRIHQRIHTGEKPYKCSEC 248

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-110914-181 si:dkey-262g12.7 "si:dkey-262g12.7" [Danio rerio (taxid:7955)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 42/98 (42%), Positives = 63/98 (64%)

Query:    12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
             FTC  C K F+ ++ L+AH+R   G   E+P F C+   +C + FT ++ + +H+ R H 
Sbjct:    78 FTCCQCGKSFTLKHNLEAHMRIHTG---EKP-FSCD---QCGKSFTQKSKIKVHM-RVHT 129

Query:    72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
             +E+PY C +C KSF  K   K+H R+HTGEKP+AC+ C
Sbjct:   130 RERPYTCPECGKSFRQKQHLKLHIRIHTGEKPFACQQC 167

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1LTL1 LOC691254 "Protein LOC691254" [Rattus norvegicus (taxid:10116)]

 Score = 228 (85.3 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 45/98 (45%), Positives = 60/98 (61%)

Query:    12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
             + C  C K F+ +  LK H+R   G   E+P +KC    ECD+ F  ++ LNIH +R H 
Sbjct:   258 YKCSECDKCFTEKGTLKRHMRIHTG---EKP-YKCS---ECDKCFRLQSHLNIH-QRIHT 309

Query:    72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
              EKPY+CS+C K F  K + +IH R+HTGEKPY C  C
Sbjct:   310 GEKPYKCSECEKYFTDKCNFRIHQRIHTGEKPYKCSEC 347

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2RHJ1 ZNF227 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 233 (87.1 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 46/98 (46%), Positives = 60/98 (61%)

Query:    12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
             + C VC K FSY + LK H     G   E+P +KCE   EC + F+ R+ L+ H +R H 
Sbjct:   561 YKCDVCGKDFSYSSNLKLHQVIHTG---EKP-YKCE---ECGKGFSWRSNLHAH-QRVHS 612

Query:    72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
              EKPY+C +C KSF    D ++H RVHTGEKPY C+ C
Sbjct:   613 GEKPYKCEECDKSFSQAIDFRVHQRVHTGEKPYKCDVC 650

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|B7Z5P9 ZNF227 "Zinc finger protein 227" [Homo sapiens (taxid:9606)]

 Score = 232 (86.7 bits), Expect = 2.5e-18, P = 2.5e-18
 Identities = 47/98 (47%), Positives = 59/98 (60%)

Query:    12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
             + C VC K FSY + LK H     G   E+P +KCE   EC + F+ R+ L+ H +R H 
Sbjct:   497 YRCDVCGKDFSYSSNLKLHQVIHTG---EKP-YKCE---ECGKGFSWRSNLHAH-QRVHS 548

Query:    72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
              EKPY+C QC KSF    D ++H RVHTGEKPY C  C
Sbjct:   549 GEKPYKCEQCDKSFSQAIDFRVHQRVHTGEKPYKCGVC 586

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q86WZ6 ZNF227 "Zinc finger protein 227" [Homo sapiens (taxid:9606)]

 Score = 232 (86.7 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 47/98 (47%), Positives = 59/98 (60%)

Query:    12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
             + C VC K FSY + LK H     G   E+P +KCE   EC + F+ R+ L+ H +R H 
Sbjct:   548 YRCDVCGKDFSYSSNLKLHQVIHTG---EKP-YKCE---ECGKGFSWRSNLHAH-QRVHS 599

Query:    72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
              EKPY+C QC KSF    D ++H RVHTGEKPY C  C
Sbjct:   600 GEKPYKCEQCDKSFSQAIDFRVHQRVHTGEKPYKCGVC 637

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-080218-13 zgc:175008 "zgc:175008" [Danio rerio (taxid:7955)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 45/98 (45%), Positives = 60/98 (61%)

Query:    12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
             F+C++CSK FS ++ L  H+R   G   E+P + CE   +C + F+ +  L  H+ R H 
Sbjct:    82 FSCKLCSKSFSQKSNLDVHMRVHTG---EKP-YTCE---QCGQSFSQKQCLKTHM-RIHT 133

Query:    72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
              EKP+ C QC KSF  K +  IH RVHTGEKPY CE C
Sbjct:   134 GEKPFSCKQCGKSFSQKPNLDIHMRVHTGEKPYTCEQC 171

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1M3A8 F1M3A8 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 221 (82.9 bits), Expect = 4.5e-18, P = 4.5e-18
 Identities = 44/98 (44%), Positives = 56/98 (57%)

Query:    12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
             + C  C K FS  N L+ H R   G   E+P +KC    ECD+ F+  N L IH KR H 
Sbjct:   245 YKCNECDKAFSGHNSLQIHKRVHTG---EKP-YKCN---ECDKAFSVHNSLQIH-KRVHT 296

Query:    72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
              EKPY+C++C K+F      + H R+HTGEKPY C  C
Sbjct:   297 GEKPYKCNECDKAFSDHSSLRKHKRIHTGEKPYKCNEC 334

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-110913-98 si:dkey-92j16.1 "si:dkey-92j16.1" [Danio rerio (taxid:7955)]

 Score = 223 (83.6 bits), Expect = 4.7e-18, P = 4.7e-18
 Identities = 44/98 (44%), Positives = 60/98 (61%)

Query:    12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
             +TC+ C++ FS +  LK H+R   G   E+P F C+   +C + F+ +  L+IH+ R H 
Sbjct:   111 YTCEQCAQSFSQKQCLKTHMRIHTG---EKP-FSCK---QCGKSFSQKPNLDIHM-RVHT 162

Query:    72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
              EKPY C QC KSF  K   K H R+HTGEKPY C+ C
Sbjct:   163 GEKPYSCEQCGKSFSQKQSFKTHMRIHTGEKPYTCQQC 200

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1LYI4 F1LYI4 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 223 (83.6 bits), Expect = 5.4e-18, P = 5.4e-18
 Identities = 43/98 (43%), Positives = 58/98 (59%)

Query:    12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
             + C  C K F+  N L+ H R   G   E+P +KC+   +CD+ F+ +  L IH KR H 
Sbjct:   266 YGCNQCGKAFTRHNSLQIHKRTHTG---EKP-YKCD---QCDKAFSQQGHLRIH-KRTHT 317

Query:    72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
              EKPY+C+QC K+F      +IH R+HTGEKPY C  C
Sbjct:   318 GEKPYECNQCHKAFARHSQLQIHERIHTGEKPYRCNQC 355

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	132
COG5189	423	COG5189, SFP1, Putative transcriptional repressor	0.004

>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 12/89 (13%)

Query: 39  EERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVH 98
           + +P +KC   G C++ +  +N L  H+   H        +Q      S     I S   
Sbjct: 346 DGKP-YKCPVEG-CNKKYKNQNGLKYHMLHGH-------QNQKLHENPSPEKMNIFS--- 393

Query: 99  TGEKPYACEFCPLTFRHSSHLFRHRRSLH 127
             +KPY CE C   +++ + L  HR+  H
Sbjct: 394 AKDKPYRCEVCDKRYKNLNGLKYHRKHSH 422

Length = 423

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
KOG2462|consensus	279		99.96
KOG2462|consensus	279		99.96
KOG1074|consensus	958		99.75
KOG3576|consensus	267		99.73
KOG1074|consensus	958		99.73
KOG3623|consensus	1007		99.71
KOG3608|consensus	467		99.67
KOG3576|consensus	267		99.65
KOG3623|consensus	1007		99.61
KOG3608|consensus	467		99.52
PHA00733	128	hypothetical protein	99.33
PLN03086	567	PRLI-interacting factor K; Provisional	99.22
PHA02768	55	hypothetical protein; Provisional	99.17
PHA00733	128	hypothetical protein	99.04
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	99.03
PHA00616	44	hypothetical protein	98.96
PLN03086	567	PRLI-interacting factor K; Provisional	98.91
PHA02768	55	hypothetical protein; Provisional	98.9
KOG3993|consensus	500		98.54
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.54
PHA00732	79	hypothetical protein	98.54
PHA00616	44	hypothetical protein	98.54
KOG3993|consensus	500		98.51
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.48
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.4
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.38
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	98.3
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.3
PHA00732	79	hypothetical protein	98.18
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.17
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.17
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.17
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.11
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.97
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.96
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.87
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.84
smart00355	26	ZnF_C2H2 zinc finger.	97.7
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.64
smart00355	26	ZnF_C2H2 zinc finger.	97.57
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.55
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.51
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.32
PRK04860	160	hypothetical protein; Provisional	97.2
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.13
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.04
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	96.78
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.73
KOG2231|consensus	669		96.67
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	96.18
COG4049	65	Uncharacterized protein containing archaeal-type C	95.69
KOG2893|consensus	341		95.66
COG4049	65	Uncharacterized protein containing archaeal-type C	95.6
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	95.6
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	95.37
KOG4173|consensus	253		95.1
PRK04860	160	hypothetical protein; Provisional	95.09
KOG1146|consensus	1406		94.49
COG1592	166	Rubrerythrin [Energy production and conversion]	93.86
COG5236	493	Uncharacterized conserved protein, contains RING Z	93.06
COG5048	467	FOG: Zn-finger [General function prediction only]	92.82
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	92.77
KOG4173|consensus	253		92.76
KOG1146|consensus	1406		92.69
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	92.64
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	92.07
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	92.0
KOG2893|consensus	341		91.01
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	90.81
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	90.69
KOG2186|consensus	276		90.66
PF12907	40	zf-met2: Zinc-binding	90.62
KOG2482|consensus	423		89.91
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	89.85
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	89.23
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	89.16
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	89.02
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	88.57
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	88.47
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	88.39
KOG2482|consensus	423		87.64
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	86.34
KOG2785|consensus	390		85.9
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	85.58
COG5048	467	FOG: Zn-finger [General function prediction only]	85.45
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	83.47
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	82.94
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	82.75
KOG4167|consensus	907		82.62
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	82.31
PF13878	41	zf-C2H2_3: zinc-finger of acetyl-transferase ESCO	81.63
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	81.45
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	81.26
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	80.29

>KOG2462|consensus

Probab=99.96  E-value=7.8e-30  Score=157.04  Aligned_cols=107  Identities=31%  Similarity=0.646  Sum_probs=89.2

Q ss_pred             ceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccCh
Q psy6628           9 RVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSK   88 (132)
Q Consensus         9 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~   88 (132)
                      .+.+.|+.||++|.+..+|..|+++|..      +..|.   +||+.|...+.|+.|+ +.|+|+|||.|..|+++|.+.
T Consensus       159 ~ka~~C~~C~K~YvSmpALkMHirTH~l------~c~C~---iCGKaFSRPWLLQGHi-RTHTGEKPF~C~hC~kAFADR  228 (279)
T KOG2462|consen  159 KKAFSCKYCGKVYVSMPALKMHIRTHTL------PCECG---ICGKAFSRPWLLQGHI-RTHTGEKPFSCPHCGKAFADR  228 (279)
T ss_pred             cccccCCCCCceeeehHHHhhHhhccCC------Ccccc---cccccccchHHhhccc-ccccCCCCccCCcccchhcch
Confidence            5567788888888888888888888753      27777   8888888888888888 778888888888888888888


Q ss_pred             hhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHh
Q psy6628          89 YDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRS  125 (132)
Q Consensus        89 ~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  125 (132)
                      ++|+.||++|.+.|.|+|+.|+|.|+..+.|.+|...
T Consensus       229 SNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  229 SNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             HHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence            8888888888888888888888888888888888754

>KOG2462|consensus

Probab=99.96  E-value=2.3e-29  Score=155.03  Aligned_cols=117  Identities=29%  Similarity=0.631  Sum_probs=107.3

Q ss_pred             ceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccCh
Q psy6628           9 RVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSK   88 (132)
Q Consensus         9 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~   88 (132)
                      ...|.|++||+.+....+|.+|..+|....+. ..+.|+   .|++.|.....|..|+ ++|+  -+++|.+||+.|...
T Consensus       128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~-ka~~C~---~C~K~YvSmpALkMHi-rTH~--l~c~C~iCGKaFSRP  200 (279)
T KOG2462|consen  128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDSK-KAFSCK---YCGKVYVSMPALKMHI-RTHT--LPCECGICGKAFSRP  200 (279)
T ss_pred             CCceeccccccccccccccchhhccccccccc-ccccCC---CCCceeeehHHHhhHh-hccC--CCcccccccccccch
Confidence            34599999999999999999999999876644 448999   9999999999999998 6676  578999999999999


Q ss_pred             hhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          89 YDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        89 ~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +.|..|+++|+|||||.|+.|++.|+++++|+.|+..|.+.|+|
T Consensus       201 WLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~  244 (279)
T KOG2462|consen  201 WLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKH  244 (279)
T ss_pred             HHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccc
Confidence            99999999999999999999999999999999999999988875

>KOG1074|consensus

Probab=99.75  E-value=3.8e-19  Score=123.69  Aligned_cols=53  Identities=30%  Similarity=0.636  Sum_probs=49.8

Q ss_pred             CccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHhhh
Q psy6628          75 PYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLH  127 (132)
Q Consensus        75 ~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~  127 (132)
                      |-+|..|.+++.-.+.|..|.++|+||+||+|.+|++.|+.+.+|+.|+.+|-
T Consensus       605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHk  657 (958)
T KOG1074|consen  605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHK  657 (958)
T ss_pred             ccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccc
Confidence            45899999999999999999999999999999999999999999999998753

>KOG3576|consensus

Probab=99.73  E-value=1.6e-18  Score=103.27  Aligned_cols=113  Identities=30%  Similarity=0.588  Sum_probs=97.9

Q ss_pred             ceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccCh
Q psy6628           9 RVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSK   88 (132)
Q Consensus         9 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~   88 (132)
                      ...|+|.+|++.|.-.+-|.+|+.-|...   . .+.|.   .|++.|.+...|.+|+ +.|+|.+||.|..|+++|...
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~v---k-r~lct---~cgkgfndtfdlkrh~-rthtgvrpykc~~c~kaftqr  186 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDV---K-RHLCT---FCGKGFNDTFDLKRHT-RTHTGVRPYKCSLCEKAFTQR  186 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhhccHH---H-HHHHh---hccCcccchhhhhhhh-ccccCccccchhhhhHHHHhh
Confidence            44699999999999999999999888752   2 38998   8999999999999998 789999999999999999999


Q ss_pred             hhHHHHHHH-h----------cCCCCccCCCchhccccchHHHHHHHhhhhh
Q psy6628          89 YDHKIHSRV-H----------TGEKPYACEFCPLTFRHSSHLFRHRRSLHQM  129 (132)
Q Consensus        89 ~~l~~h~~~-h----------~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  129 (132)
                      ..|..|.+. |          ..++.|.|..||.+-.....+..|++.+|..
T Consensus       187 csleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~  238 (267)
T KOG3576|consen  187 CSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPF  238 (267)
T ss_pred             ccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCC
Confidence            999999763 2          2468899999999888888888898887753

>KOG1074|consensus

Probab=99.73  E-value=1.2e-18  Score=121.19  Aligned_cols=56  Identities=34%  Similarity=0.595  Sum_probs=52.3

Q ss_pred             ccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhcc
Q psy6628          76 YQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYE  131 (132)
Q Consensus        76 ~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  131 (132)
                      ..|.+|++.|...+.|..|+++|+++|||.|.+|++.|..+.+|+.|+..|+...|
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~  935 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWVQP  935 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhccccccCC
Confidence            47999999999999999999999999999999999999999999999998876543

>KOG3623|consensus

Probab=99.71  E-value=1.9e-18  Score=119.02  Aligned_cols=111  Identities=32%  Similarity=0.687  Sum_probs=96.3

Q ss_pred             ceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCC-------------CCC
Q psy6628           9 RVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQK-------------EKP   75 (132)
Q Consensus         9 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~-------------~~~   75 (132)
                      ....+|++|++.+.....|.+|+...+..  ..+.|.|.   .|..+|.+...|.+|+ ..|..             .+.
T Consensus       208 sqlltcpycdrgykrltslkeHikyrhek--ne~nfsC~---lCsytFAyRtQLErhm-~~hkpg~dqa~sltqsa~lRK  281 (1007)
T KOG3623|consen  208 SQLLTCPYCDRGYKRLTSLKEHIKYRHEK--NEPNFSCM---LCSYTFAYRTQLERHM-QLHKPGGDQAISLTQSALLRK  281 (1007)
T ss_pred             hhhhcchhHHHHHHHHHHHHHHHHHHHhh--CCCCCcch---hhhhhhhhHHHHHHHH-HhhcCCCcccccccchhhhcc
Confidence            34578999999999999999999866543  33458999   9999999999999998 55532             367


Q ss_pred             ccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHh
Q psy6628          76 YQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRS  125 (132)
Q Consensus        76 ~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  125 (132)
                      |+|..|+++|+++-.|+.|+++|.|||||.|+-|++.|+...++-.|+..
T Consensus       282 FKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  282 FKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             ccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccc
Confidence            99999999999999999999999999999999999999999988888754

>KOG3608|consensus

Probab=99.67  E-value=4.3e-17  Score=104.33  Aligned_cols=80  Identities=31%  Similarity=0.708  Sum_probs=64.1

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC--chhccccchHHHH
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF--CPLTFRHSSHLFR  121 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~--C~~~f~~~~~l~~  121 (132)
                      |+|+   .|+......++|..|++..|...|||+|+.|.+.+...+.|.+|...|. +..|+|..  |..+|.+...+++
T Consensus       264 ykCp---lCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~  339 (467)
T KOG3608|consen  264 YKCP---LCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRR  339 (467)
T ss_pred             cccc---ccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHH
Confidence            7787   8888888888888898778888999999999999999999999988776 56666654  6666666666666


Q ss_pred             HHHhhh
Q psy6628         122 HRRSLH  127 (132)
Q Consensus       122 H~~~~~  127 (132)
                      |.+.+|
T Consensus       340 H~~evh  345 (467)
T KOG3608|consen  340 HFLEVH  345 (467)
T ss_pred             HHHHhc
Confidence            666555

>KOG3576|consensus

Probab=99.65  E-value=2.9e-17  Score=97.89  Aligned_cols=82  Identities=35%  Similarity=0.746  Sum_probs=77.5

Q ss_pred             ccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHH
Q psy6628          43 RFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRH  122 (132)
Q Consensus        43 ~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H  122 (132)
                      .+.|.   .|++.|.....|.+|+ .-|...+.+.|..||+.|....+|++|+++|+|.+||+|..|++.|+++.+|..|
T Consensus       117 ~ftCr---vCgK~F~lQRmlnrh~-kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcslesh  192 (267)
T KOG3576|consen  117 SFTCR---VCGKKFGLQRMLNRHL-KCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESH  192 (267)
T ss_pred             eeeee---hhhhhhhHHHHHHHHh-hhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHH
Confidence            48888   9999999999999999 6788889999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhh
Q psy6628         123 RRSLHQ  128 (132)
Q Consensus       123 ~~~~~~  128 (132)
                      ++..||
T Consensus       193 l~kvhg  198 (267)
T KOG3576|consen  193 LKKVHG  198 (267)
T ss_pred             HHHHcC
Confidence            988776

>KOG3623|consensus

Probab=99.61  E-value=2.1e-16  Score=109.13  Aligned_cols=78  Identities=36%  Similarity=0.787  Sum_probs=72.6

Q ss_pred             CccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHH
Q psy6628          42 PRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFR  121 (132)
Q Consensus        42 ~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~  121 (132)
                      ..|.|.   .|++.|.-.++|.+|. =.|+|++||+|..|.++|+.+-.|..|.+.|.|||||+|..|++.|+...+.-+
T Consensus       893 gmyaCD---qCDK~FqKqSSLaRHK-YEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQ  968 (1007)
T KOG3623|consen  893 GMYACD---QCDKAFQKQSSLARHK-YEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQ  968 (1007)
T ss_pred             ccchHH---HHHHHHHhhHHHHHhh-hhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHh
Confidence            349999   9999999999999996 779999999999999999999999999999999999999999999999988888


Q ss_pred             HH
Q psy6628         122 HR  123 (132)
Q Consensus       122 H~  123 (132)
                      |+
T Consensus       969 HM  970 (1007)
T KOG3623|consen  969 HM  970 (1007)
T ss_pred             hh
Confidence            87

>KOG3608|consensus

Probab=99.52  E-value=4.3e-14  Score=90.83  Aligned_cols=111  Identities=29%  Similarity=0.578  Sum_probs=96.7

Q ss_pred             eeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCc--ccccccCh
Q psy6628          11 VFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ--CSKSFFSK   88 (132)
Q Consensus        11 ~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~--C~~~~~~~   88 (132)
                      -|+|+.|+++....+.|..|++..+..  +.| |+|.   .|+..+.....|..|. ..|. +..|.|..  |..++.+.
T Consensus       263 ~ykCplCdmtc~~~ssL~~H~r~rHs~--dkp-fKCd---~Cd~~c~~esdL~kH~-~~HS-~~~y~C~h~~C~~s~r~~  334 (467)
T KOG3608|consen  263 CYKCPLCDMTCSSASSLTTHIRYRHSK--DKP-FKCD---ECDTRCVRESDLAKHV-QVHS-KTVYQCEHPDCHYSVRTY  334 (467)
T ss_pred             cccccccccCCCChHHHHHHHHhhhcc--CCC-cccc---chhhhhccHHHHHHHH-Hhcc-ccceecCCCCCcHHHHHH
Confidence            489999999999999999999987663  444 9999   9999999999999998 6787 56799988  99999999


Q ss_pred             hhHHHHHHHhc-C--CCCccCCCchhccccchHHHHHHHhhhhh
Q psy6628          89 YDHKIHSRVHT-G--EKPYACEFCPLTFRHSSHLFRHRRSLHQM  129 (132)
Q Consensus        89 ~~l~~h~~~h~-~--~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  129 (132)
                      ..+.+|+..++ |  +-+|.|..|++.|++-.+|..|+...|+-
T Consensus       335 ~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f  378 (467)
T KOG3608|consen  335 TQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGF  378 (467)
T ss_pred             HHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhhcc
Confidence            99999997654 3  45799999999999999999999887763

>PHA00733 hypothetical protein

Probab=99.33  E-value=2.8e-12  Score=73.17  Aligned_cols=84  Identities=21%  Similarity=0.388  Sum_probs=66.8

Q ss_pred             CCccccCCCCCCcccccChHHHHhh--h--hhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccc
Q psy6628          41 RPRFKCEGRGECDRVFTTRNMLNIH--I--KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHS  116 (132)
Q Consensus        41 ~~~~~c~~~~~c~~~~~~~~~l~~h--~--~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~  116 (132)
                      ...+.|.   +|...|.....|..+  +  ...+.+.++|.|..|++.|.....|..|+..+  +.++.|.+|++.|...
T Consensus        38 ~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~  112 (128)
T PHA00733         38 QKRLIRA---VVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNT  112 (128)
T ss_pred             hhhHHHH---HHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCH
Confidence            3448888   788777766555444  1  02234578999999999999999999999876  4679999999999999


Q ss_pred             hHHHHHHHhhhhh
Q psy6628         117 SHLFRHRRSLHQM  129 (132)
Q Consensus       117 ~~l~~H~~~~~~~  129 (132)
                      ..|..|+...|++
T Consensus       113 ~sL~~H~~~~h~~  125 (128)
T PHA00733        113 DSTLDHVCKKHNI  125 (128)
T ss_pred             HHHHHHHHHhcCc
Confidence            9999999887764

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.22  E-value=5.4e-11  Score=82.13  Aligned_cols=106  Identities=17%  Similarity=0.400  Sum_probs=85.0

Q ss_pred             ceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccC-
Q psy6628           9 RVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFS-   87 (132)
Q Consensus         9 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~-   87 (132)
                      ++.+.|+.|++.|. ...|..|+.+++.      ++.|+    |+..+ ....|..|+ ..+...+++.|..|+..+.. 
T Consensus       451 ~~H~~C~~Cgk~f~-~s~LekH~~~~Hk------pv~Cp----Cg~~~-~R~~L~~H~-~thCp~Kpi~C~fC~~~v~~g  517 (567)
T PLN03086        451 KNHVHCEKCGQAFQ-QGEMEKHMKVFHE------PLQCP----CGVVL-EKEQMVQHQ-ASTCPLRLITCRFCGDMVQAG  517 (567)
T ss_pred             ccCccCCCCCCccc-hHHHHHHHHhcCC------CccCC----CCCCc-chhHHHhhh-hccCCCCceeCCCCCCccccC
Confidence            44578999999996 6789999998752      38897    77554 567899998 77899999999999998852 


Q ss_pred             ---------hhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhh
Q psy6628          88 ---------KYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQM  129 (132)
Q Consensus        88 ---------~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  129 (132)
                               ...|..|.... +.+++.|..|++.+..+ .+..|+...|.+
T Consensus       518 ~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~~~~h~~  566 (567)
T PLN03086        518 GSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSVMLK-EMDIHQIAVHQK  566 (567)
T ss_pred             ccccchhhhhhhHHHHHHhc-CCcceEccccCCeeeeh-hHHHHHHHhhcC
Confidence                     34788898875 88999999999999876 567888777653

>PHA02768 hypothetical protein; Provisional

Probab=99.17  E-value=1.5e-11  Score=59.01  Aligned_cols=43  Identities=16%  Similarity=0.360  Sum_probs=36.4

Q ss_pred             CccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHH
Q psy6628          75 PYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHL  119 (132)
Q Consensus        75 ~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l  119 (132)
                      .|.|+.||+.|...+.|..|++.|+  ++++|..|++.|.+.+.|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            4788889999999999999998887  688888899988877765

>PHA00733 hypothetical protein

Probab=99.04  E-value=3.8e-10  Score=64.51  Aligned_cols=84  Identities=20%  Similarity=0.256  Sum_probs=65.5

Q ss_pred             eeeeCCCCccccCChhHHHHH--HHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccC
Q psy6628          10 VVFTCQVCSKIFSYENGLKAH--VRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFS   87 (132)
Q Consensus        10 ~~~~C~~C~~~f~~~~~l~~h--~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~   87 (132)
                      +.+.|.+|.+.|.....|..+  +..+....+..+ |.|+   .|++.|.....|..|+ ..+  ..++.|..|++.|..
T Consensus        39 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kP-y~C~---~Cgk~Fss~s~L~~H~-r~h--~~~~~C~~CgK~F~~  111 (128)
T PHA00733         39 KRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSP-YVCP---LCLMPFSSSVSLKQHI-RYT--EHSKVCPVCGKEFRN  111 (128)
T ss_pred             hhHHHHHHhhhccChhhhcchHHHHhhcccCCCCC-ccCC---CCCCcCCCHHHHHHHH-hcC--CcCccCCCCCCccCC
Confidence            458899999998888877776  333322222444 9999   9999999999999998 544  357999999999999


Q ss_pred             hhhHHHHHHHhcC
Q psy6628          88 KYDHKIHSRVHTG  100 (132)
Q Consensus        88 ~~~l~~h~~~h~~  100 (132)
                      ...|..|+...++
T Consensus       112 ~~sL~~H~~~~h~  124 (128)
T PHA00733        112 TDSTLDHVCKKHN  124 (128)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999876543

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=99.03  E-value=1.3e-10  Score=47.94  Aligned_cols=26  Identities=46%  Similarity=1.027  Sum_probs=21.8

Q ss_pred             hHHHHHHHhcCCCCccCCCchhcccc
Q psy6628          90 DHKIHSRVHTGEKPYACEFCPLTFRH  115 (132)
Q Consensus        90 ~l~~h~~~h~~~~~~~C~~C~~~f~~  115 (132)
                      +|..|++.|++++||.|++|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            46788889999999999999988863

...

>PHA00616 hypothetical protein

Probab=98.96  E-value=3e-10  Score=51.96  Aligned_cols=29  Identities=28%  Similarity=0.502  Sum_probs=14.4

Q ss_pred             CccCCCchhccccchHHHHHHHhhhhhcc
Q psy6628         103 PYACEFCPLTFRHSSHLFRHRRSLHQMYE  131 (132)
Q Consensus       103 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  131 (132)
                      ||+|+.||+.|..+++|..|++.+||++|
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~   29 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNK   29 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCc
Confidence            34455555555555555555555555443

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.91  E-value=1.9e-09  Score=74.65  Aligned_cols=78  Identities=19%  Similarity=0.432  Sum_probs=61.9

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccc---------
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFR---------  114 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~---------  114 (132)
                      +.|+   .|+..|. ...|..|+ ..+.  +++.|+ |+..+ ....|..|+..|..++++.|+.|++.|.         
T Consensus       454 ~~C~---~Cgk~f~-~s~LekH~-~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~  524 (567)
T PLN03086        454 VHCE---KCGQAFQ-QGEMEKHM-KVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVR  524 (567)
T ss_pred             ccCC---CCCCccc-hHHHHHHH-HhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchh
Confidence            5666   8999886 56789998 4453  789999 99765 5689999999999999999999999984         


Q ss_pred             -cchHHHHHHHhhhhhcc
Q psy6628         115 -HSSHLFRHRRSLHQMYE  131 (132)
Q Consensus       115 -~~~~l~~H~~~~~~~~~  131 (132)
                       ..+.|..|.... |.++
T Consensus       525 d~~s~Lt~HE~~C-G~rt  541 (567)
T PLN03086        525 DRLRGMSEHESIC-GSRT  541 (567)
T ss_pred             hhhhhHHHHHHhc-CCcc
Confidence             235788998774 5543

>PHA02768 hypothetical protein; Provisional

Probab=98.90  E-value=8.4e-10  Score=52.99  Aligned_cols=43  Identities=19%  Similarity=0.544  Sum_probs=32.7

Q ss_pred             eeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHH
Q psy6628          11 VFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNML   62 (132)
Q Consensus        11 ~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l   62 (132)
                      .|+|+.||+.|....+|..|+++|..      +++|.   .|++.|...+.|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~k------~~kc~---~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHNT------NLKLS---NCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcCC------cccCC---cccceeccccee
Confidence            47888888888888888888888762      27787   788887766543

>KOG3993|consensus

Probab=98.54  E-value=1.7e-08  Score=66.87  Aligned_cols=108  Identities=20%  Similarity=0.413  Sum_probs=68.8

Q ss_pred             eeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCcc-CCcc-cc-cccCh
Q psy6628          12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQ-CSQC-SK-SFFSK   88 (132)
Q Consensus        12 ~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~-c~~C-~~-~~~~~   88 (132)
                      |.|..|-..|.+...|.+|...-....    .|.|+   +|++.|.-..+|..|. +=|.-..... -..- .+ .....
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~RIV~v----EYrCP---EC~KVFsCPANLASHR-RWHKPR~eaa~a~~~P~k~~~~~r  339 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPRIVHV----EYRCP---ECDKVFSCPANLASHR-RWHKPRPEAAKAGSPPPKQAVETR  339 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCeeEEe----eecCC---cccccccCchhhhhhh-cccCCchhhhhcCCCChhhhhhhh
Confidence            789999999999999999987544322    38999   8999999999999886 4342111000 0000 00 00000


Q ss_pred             hhHHHHHH---HhcCCCCccCCCchhccccchHHHHHHHhhhh
Q psy6628          89 YDHKIHSR---VHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus        89 ~~l~~h~~---~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  128 (132)
                       .+.+-..   ....+..|.|..|+++|.....|++|+..|+.
T Consensus       340 -ae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~  381 (500)
T KOG3993|consen  340 -AEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQR  381 (500)
T ss_pred             -hhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhc
Confidence             0000000   01224589999999999999999999988765

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.54  E-value=3.8e-08  Score=40.51  Aligned_cols=25  Identities=52%  Similarity=0.975  Sum_probs=17.0

Q ss_pred             HHHhhhhhccCCCCCccCCccccccc
Q psy6628          61 MLNIHIKRDHQKEKPYQCSQCSKSFF   86 (132)
Q Consensus        61 ~l~~h~~~~~~~~~~~~c~~C~~~~~   86 (132)
                      +|..|+ ..|++++||.|+.|++.|.
T Consensus         1 ~l~~H~-~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHM-RTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHH-HHHSSSSSEEESSSSEEES
T ss_pred             CHHHHh-hhcCCCCCCCCCCCcCeeC
Confidence            356676 5577777777777777664

...

>PHA00732 hypothetical protein

Probab=98.54  E-value=6.5e-08  Score=50.59  Aligned_cols=46  Identities=30%  Similarity=0.512  Sum_probs=29.1

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHh
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVH   98 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h   98 (132)
                      |.|.   .|++.|....+|..|++..|.   ++.|+.|++.|.   .+..|..+.
T Consensus         2 y~C~---~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          2 FKCP---ICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             ccCC---CCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhccc
Confidence            5666   777777777777777632343   246777777776   355566443

>PHA00616 hypothetical protein

Probab=98.54  E-value=4e-08  Score=45.03  Aligned_cols=39  Identities=23%  Similarity=0.342  Sum_probs=28.1

Q ss_pred             CccCCcccccccChhhHHHHHHHhcCCCCccCCCchhcc
Q psy6628          75 PYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTF  113 (132)
Q Consensus        75 ~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f  113 (132)
                      ||+|..||+.|...+.+..|+..|++++++.|..--..|
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~~y~~f   39 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYFYIYF   39 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeEEEEEE
Confidence            467788888888888888888888877777776543333

>KOG3993|consensus

Probab=98.51  E-value=2.3e-08  Score=66.31  Aligned_cols=114  Identities=24%  Similarity=0.401  Sum_probs=69.4

Q ss_pred             eeeCCCCccccCChhHHHHHHHhhcCC-----C------------------------CCCCccccCCCCCCcccccChHH
Q psy6628          11 VFTCQVCSKIFSYENGLKAHVRNKHGS-----S------------------------EERPRFKCEGRGECDRVFTTRNM   61 (132)
Q Consensus        11 ~~~C~~C~~~f~~~~~l~~h~~~~~~~-----~------------------------~~~~~~~c~~~~~c~~~~~~~~~   61 (132)
                      .|.|++|+++|..-.+|..|.+=|...     .                        .+..-|.|.   .|++.|....-
T Consensus       295 EYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~---~C~KkFrRqAY  371 (500)
T KOG3993|consen  295 EYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCH---TCGKKFRRQAY  371 (500)
T ss_pred             eecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecH---HhhhhhHHHHH
Confidence            499999999999999999999866410     0                        001126666   78888888777


Q ss_pred             HHhhhhhccCCCCC----------------c-----------------------------cCCcccccccChhhHHHHHH
Q psy6628          62 LNIHIKRDHQKEKP----------------Y-----------------------------QCSQCSKSFFSKYDHKIHSR   96 (132)
Q Consensus        62 l~~h~~~~~~~~~~----------------~-----------------------------~c~~C~~~~~~~~~l~~h~~   96 (132)
                      |..|+...+.....                +                             .++.++..+..+..-..+..
T Consensus       372 LrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~r  451 (500)
T KOG3993|consen  372 LRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGR  451 (500)
T ss_pred             HHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeeccccccCCCCCCCCcccCCCCCcccc
Confidence            77775222211100                0                             12223322222222222222


Q ss_pred             HhcCCCCccCCCchhccccchHHHHHHHhhh
Q psy6628          97 VHTGEKPYACEFCPLTFRHSSHLFRHRRSLH  127 (132)
Q Consensus        97 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~  127 (132)
                      .-..+.-|.|.+|...|.+...|.+|+...|
T Consensus       452 lg~~~q~f~~ky~~atfyss~~ltrhin~~H  482 (500)
T KOG3993|consen  452 LGIAEQGFTCKYCPATFYSSPGLTRHINKCH  482 (500)
T ss_pred             ccchhhccccccchHhhhcCcchHhHhhhcC
Confidence            2223456899999999999999999987644

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.48  E-value=3.8e-07  Score=44.37  Aligned_cols=51  Identities=27%  Similarity=0.518  Sum_probs=33.6

Q ss_pred             CccCCcccccccChhhHHHHHHHh-cC-CCCccCCCchhccccchHHHHHHHhhhh
Q psy6628          75 PYQCSQCSKSFFSKYDHKIHSRVH-TG-EKPYACEFCPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus        75 ~~~c~~C~~~~~~~~~l~~h~~~h-~~-~~~~~C~~C~~~f~~~~~l~~H~~~~~~  128 (132)
                      .|.|+.|++ ..+...|..|.... .. .+.+.||+|...+.  .+|..|+..+|+
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            367777777 45566777776543 32 24678888887554  478888877664

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.40  E-value=2.9e-07  Score=36.66  Aligned_cols=23  Identities=39%  Similarity=0.905  Sum_probs=19.9

Q ss_pred             eeCCCCccccCChhHHHHHHHhh
Q psy6628          12 FTCQVCSKIFSYENGLKAHVRNK   34 (132)
Q Consensus        12 ~~C~~C~~~f~~~~~l~~h~~~~   34 (132)
                      |+|+.|++.|.....|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            68999999999999999998763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.38  E-value=1.6e-07  Score=37.45  Aligned_cols=22  Identities=41%  Similarity=0.803  Sum_probs=17.8

Q ss_pred             ccCCCchhccccchHHHHHHHh
Q psy6628         104 YACEFCPLTFRHSSHLFRHRRS  125 (132)
Q Consensus       104 ~~C~~C~~~f~~~~~l~~H~~~  125 (132)
                      |.|++|++.|...+.|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            5688888888888888888876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.30  E-value=5.1e-07  Score=42.28  Aligned_cols=33  Identities=30%  Similarity=0.480  Sum_probs=22.5

Q ss_pred             cCCCCccCCCchhccccchHHHHHHHhhhhhcc
Q psy6628          99 TGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYE  131 (132)
Q Consensus        99 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  131 (132)
                      ..+.|..|++|+..+.+..+|++|++..|+.||
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            346788888888888888888888888888876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.30  E-value=4.2e-07  Score=36.42  Aligned_cols=24  Identities=38%  Similarity=0.796  Sum_probs=17.9

Q ss_pred             ccCCCchhccccchHHHHHHHhhh
Q psy6628         104 YACEFCPLTFRHSSHLFRHRRSLH  127 (132)
Q Consensus       104 ~~C~~C~~~f~~~~~l~~H~~~~~  127 (132)
                      |.|++|++.|.+...|..|+..+|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            578888888888888888887765

...

>PHA00732 hypothetical protein

Probab=98.18  E-value=1.5e-06  Score=45.49  Aligned_cols=43  Identities=30%  Similarity=0.603  Sum_probs=35.8

Q ss_pred             eeeCCCCccccCChhHHHHHHHh-hcCCCCCCCccccCCCCCCcccccChHHHHhhh
Q psy6628          11 VFTCQVCSKIFSYENGLKAHVRN-KHGSSEERPRFKCEGRGECDRVFTTRNMLNIHI   66 (132)
Q Consensus        11 ~~~C~~C~~~f~~~~~l~~h~~~-~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~   66 (132)
                      +|.|..|++.|.....|..|++. |.+       +.|+   .|++.|..   +..|.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~-------~~C~---~CgKsF~~---l~~H~   44 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL-------TKCP---VCNKSYRR---LNQHF   44 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC-------CccC---CCCCEeCC---hhhhh
Confidence            58899999999999999999985 432       5788   99999984   66676

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.17  E-value=5e-06  Score=40.41  Aligned_cols=49  Identities=31%  Similarity=0.513  Sum_probs=30.8

Q ss_pred             eeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhh
Q psy6628          11 VFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIK   67 (132)
Q Consensus        11 ~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~   67 (132)
                      .|.||.|++ ..+...|..|....+...  ...+.||   +|...+.  .+|..|+.
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~--~~~v~CP---iC~~~~~--~~l~~Hl~   50 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSE--SKNVVCP---ICSSRVT--DNLIRHLN   50 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCC--CCCccCC---Cchhhhh--hHHHHHHH
Confidence            477888888 445677888877655432  1237788   7766433  36666763

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.17  E-value=2.4e-06  Score=34.12  Aligned_cols=24  Identities=38%  Similarity=0.927  Sum_probs=18.9

Q ss_pred             eeCCCCccccCChhHHHHHHHhhc
Q psy6628          12 FTCQVCSKIFSYENGLKAHVRNKH   35 (132)
Q Consensus        12 ~~C~~C~~~f~~~~~l~~h~~~~~   35 (132)
                      |.|++|+..|.+...|..|+..++
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            689999999999999999988763

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.17  E-value=6.7e-07  Score=37.06  Aligned_cols=26  Identities=38%  Similarity=0.680  Sum_probs=20.2

Q ss_pred             CccCCCchhccccchHHHHHHHhhhh
Q psy6628         103 PYACEFCPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus       103 ~~~C~~C~~~f~~~~~l~~H~~~~~~  128 (132)
                      ||.|.+|++.|.....|..|++.|++
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            57788888888888888888877654

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.11  E-value=1.8e-06  Score=35.75  Aligned_cols=25  Identities=36%  Similarity=0.692  Sum_probs=21.2

Q ss_pred             eeeCCCCccccCChhHHHHHHHhhc
Q psy6628          11 VFTCQVCSKIFSYENGLKAHVRNKH   35 (132)
Q Consensus        11 ~~~C~~C~~~f~~~~~l~~h~~~~~   35 (132)
                      +|+|..|++.|.+...|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            5889999999999999999987764

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.97  E-value=2.2e-06  Score=55.37  Aligned_cols=52  Identities=35%  Similarity=0.756  Sum_probs=43.1

Q ss_pred             CCCccCCc--ccccccChhhHHHHHHH-h------------------cCCCCccCCCchhccccchHHHHHHH
Q psy6628          73 EKPYQCSQ--CSKSFFSKYDHKIHSRV-H------------------TGEKPYACEFCPLTFRHSSHLFRHRR  124 (132)
Q Consensus        73 ~~~~~c~~--C~~~~~~~~~l~~h~~~-h------------------~~~~~~~C~~C~~~f~~~~~l~~H~~  124 (132)
                      .|||.|++  |.+.+.+...|+-|+.. |                  ..+|||.|++|++.|.....|+-|..
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            48999988  99999999999988763 2                  12589999999999999999887753

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.96  E-value=1.2e-05  Score=37.76  Aligned_cols=33  Identities=18%  Similarity=0.402  Sum_probs=21.5

Q ss_pred             cccccceeeeCCCCccccCChhHHHHHHHhhcC
Q psy6628           4 VHNIHRVVFTCQVCSKIFSYENGLKAHVRNKHG   36 (132)
Q Consensus         4 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~   36 (132)
                      .+..++.+.+|++|+.++.+..+|++|+...++
T Consensus        17 ~~~~S~~PatCP~C~a~~~~srnLrRHle~~H~   49 (54)
T PF09237_consen   17 SKSQSEQPATCPICGAVIRQSRNLRRHLEIRHF   49 (54)
T ss_dssp             CCCTTS--EE-TTT--EESSHHHHHHHHHHHTT
T ss_pred             HhhccCCCCCCCcchhhccchhhHHHHHHHHhc
Confidence            455677788888888888888888888877665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.87  E-value=9.7e-06  Score=44.31  Aligned_cols=73  Identities=26%  Similarity=0.508  Sum_probs=19.6

Q ss_pred             eCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHH
Q psy6628          13 TCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHK   92 (132)
Q Consensus        13 ~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~   92 (132)
                      .|..|+..|.+...|..|+...++.       ..+   .. ..+.....+...+ . ..-...+.|..|++.|.+...|.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~-------~~~---~~-~~l~~~~~~~~~~-~-~~~~~~~~C~~C~~~f~s~~~l~   67 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGF-------DIP---DQ-KYLVDPNRLLNYL-R-KKVKESFRCPYCNKTFRSREALQ   67 (100)
T ss_dssp             -------------------------------------------------------------SSEEBSSSS-EESSHHHHH
T ss_pred             Ccccccccccccccccccccccccc-------ccc---cc-ccccccccccccc-c-cccCCCCCCCccCCCCcCHHHHH
Confidence            4889999999999999998766652       111   01 1111222233332 1 11122578999998898888899


Q ss_pred             HHHHHh
Q psy6628          93 IHSRVH   98 (132)
Q Consensus        93 ~h~~~h   98 (132)
                      .|+..+
T Consensus        68 ~Hm~~~   73 (100)
T PF12756_consen   68 EHMRSK   73 (100)
T ss_dssp             HHHHHT
T ss_pred             HHHcCc
Confidence            998864

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.84  E-value=9.6e-06  Score=44.33  Aligned_cols=70  Identities=27%  Similarity=0.429  Sum_probs=21.7

Q ss_pred             CCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHhh
Q psy6628          51 ECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSL  126 (132)
Q Consensus        51 ~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  126 (132)
                      .|+..|.....|..|+...|.-..+     ....+.....+..+..... ...+.|.+|++.|.+...|..|++.+
T Consensus         4 ~C~~~f~~~~~l~~H~~~~H~~~~~-----~~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    4 FCDESFSSVDDLLQHMKKKHGFDIP-----DQKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             ---------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccc-----ccccccccccccccccccc-CCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            8999999999999998665643322     1111223333333333222 23799999999999999999999864

>smart00355 ZnF_C2H2 zinc finger

Probab=97.70  E-value=3.3e-05  Score=31.18  Aligned_cols=23  Identities=35%  Similarity=0.621  Sum_probs=19.3

Q ss_pred             ccCCCchhccccchHHHHHHHhh
Q psy6628         104 YACEFCPLTFRHSSHLFRHRRSL  126 (132)
Q Consensus       104 ~~C~~C~~~f~~~~~l~~H~~~~  126 (132)
                      |.|+.|++.|...+.|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            57888999999999999998754

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.64  E-value=3.7e-05  Score=30.73  Aligned_cols=24  Identities=33%  Similarity=0.672  Sum_probs=17.2

Q ss_pred             ccCCCchhccccchHHHHHHHhhhh
Q psy6628         104 YACEFCPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus       104 ~~C~~C~~~f~~~~~l~~H~~~~~~  128 (132)
                      |+|+.|+.... .+.|..|++.+|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            57888887777 7788888887764

>smart00355 ZnF_C2H2 zinc finger

Probab=97.57  E-value=7.3e-05  Score=30.09  Aligned_cols=24  Identities=33%  Similarity=0.834  Sum_probs=19.1

Q ss_pred             eeCCCCccccCChhHHHHHHHhhc
Q psy6628          12 FTCQVCSKIFSYENGLKAHVRNKH   35 (132)
Q Consensus        12 ~~C~~C~~~f~~~~~l~~h~~~~~   35 (132)
                      |.|+.|++.|.....|..|+..|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            568888888888888888887553

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.55  E-value=2.3e-05  Score=50.78  Aligned_cols=70  Identities=29%  Similarity=0.525  Sum_probs=42.4

Q ss_pred             ceeeeCCC--CccccCChhHHHHHHHhhcCCCCCCC-ccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccc
Q psy6628           9 RVVFTCQV--CSKIFSYENGLKAHVRNKHGSSEERP-RFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSF   85 (132)
Q Consensus         9 ~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~~~~~~-~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~   85 (132)
                      +++|+|++  |.+.+.+...|+=|+.--+.  .... +-.-+   +--.             ......|||+|.+|++.+
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~--~~~~~~~p~p---~~~~-------------~F~~~~KPYrCevC~KRY  408 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQ--NQKLHENPSP---EKMN-------------IFSAKDKPYRCEVCDKRY  408 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhcccc--CcccCCCCCc---cccc-------------cccccCCceeccccchhh
Confidence            37788877  77777777777777532111  0000 00011   1101             123456899999999999


Q ss_pred             cChhhHHHHHH
Q psy6628          86 FSKYDHKIHSR   96 (132)
Q Consensus        86 ~~~~~l~~h~~   96 (132)
                      ++...|+-|..
T Consensus       409 KNlNGLKYHr~  419 (423)
T COG5189         409 KNLNGLKYHRK  419 (423)
T ss_pred             ccCccceeccc
Confidence            99988888764

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.51  E-value=4.1e-05  Score=30.89  Aligned_cols=22  Identities=32%  Similarity=0.736  Sum_probs=17.5

Q ss_pred             ccCCCchhccccchHHHHHHHh
Q psy6628         104 YACEFCPLTFRHSSHLFRHRRS  125 (132)
Q Consensus       104 ~~C~~C~~~f~~~~~l~~H~~~  125 (132)
                      |.|.+|.+.|.+...+..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            5688888888888888888765

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.32  E-value=0.0002  Score=28.83  Aligned_cols=23  Identities=52%  Similarity=1.051  Sum_probs=18.2

Q ss_pred             eeCCCCccccCChhHHHHHHHhh
Q psy6628          12 FTCQVCSKIFSYENGLKAHVRNK   34 (132)
Q Consensus        12 ~~C~~C~~~f~~~~~l~~h~~~~   34 (132)
                      |.|.+|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            57888888888888888887643

>PRK04860 hypothetical protein; Provisional

Probab=97.20  E-value=0.00019  Score=42.79  Aligned_cols=38  Identities=34%  Similarity=0.766  Sum_probs=32.9

Q ss_pred             CccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccc
Q psy6628          75 PYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHS  116 (132)
Q Consensus        75 ~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~  116 (132)
                      +|.|. |+.   ....+.+|.+++.++++|.|..|+..|...
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            58897 987   666789999999999999999999988754

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.13  E-value=0.00069  Score=26.92  Aligned_cols=23  Identities=35%  Similarity=0.736  Sum_probs=16.4

Q ss_pred             eeCCCCccccCChhHHHHHHHhhc
Q psy6628          12 FTCQVCSKIFSYENGLKAHVRNKH   35 (132)
Q Consensus        12 ~~C~~C~~~f~~~~~l~~h~~~~~   35 (132)
                      |.|+.|+.... ...|..|+..++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            67888888777 778888887754

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.04  E-value=0.00013  Score=30.05  Aligned_cols=22  Identities=27%  Similarity=0.635  Sum_probs=15.5

Q ss_pred             ccCCCchhccccchHHHHHHHh
Q psy6628         104 YACEFCPLTFRHSSHLFRHRRS  125 (132)
Q Consensus       104 ~~C~~C~~~f~~~~~l~~H~~~  125 (132)
                      |.|.+|++.|.+...+..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            5677777777777777777654

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=96.78  E-value=0.0012  Score=26.61  Aligned_cols=21  Identities=24%  Similarity=0.616  Sum_probs=15.0

Q ss_pred             ccCCCchhccccchHHHHHHHh
Q psy6628         104 YACEFCPLTFRHSSHLFRHRRS  125 (132)
Q Consensus       104 ~~C~~C~~~f~~~~~l~~H~~~  125 (132)
                      ..|+.|++.| ..+.|.+|+..
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4688888888 56667777654

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.73  E-value=0.00035  Score=28.72  Aligned_cols=22  Identities=50%  Similarity=0.969  Sum_probs=15.4

Q ss_pred             eeCCCCccccCChhHHHHHHHh
Q psy6628          12 FTCQVCSKIFSYENGLKAHVRN   33 (132)
Q Consensus        12 ~~C~~C~~~f~~~~~l~~h~~~   33 (132)
                      |.|..|++.|.+...+..|+..
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            5677777777777777766543

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2231|consensus

Probab=96.67  E-value=0.0043  Score=44.75  Aligned_cols=106  Identities=25%  Similarity=0.453  Sum_probs=64.6

Q ss_pred             eeCCCCcccc---------------CChhHHHHHHHhhcCCCCCCCccccCCCC-------CCcccccChHHHHhhhhhc
Q psy6628          12 FTCQVCSKIF---------------SYENGLKAHVRNKHGSSEERPRFKCEGRG-------ECDRVFTTRNMLNIHIKRD   69 (132)
Q Consensus        12 ~~C~~C~~~f---------------~~~~~l~~h~~~~~~~~~~~~~~~c~~~~-------~c~~~~~~~~~l~~h~~~~   69 (132)
                      +.|.+|+..|               .....|+.|+..-+..      +.|..|.       .+.+. .....|..|+..-
T Consensus       100 ~~C~~C~~~~~~~~~~~~~~~c~~~~s~~~Lk~H~~~~H~~------~~c~lC~~~~kif~~e~k~-Yt~~el~~h~~~g  172 (669)
T KOG2231|consen  100 HSCHICDRRFRALYNKKECLHCTEFKSVENLKNHMRDQHKL------HLCSLCLQNLKIFINERKL-YTRAELNLHLMFG  172 (669)
T ss_pred             hhcCccccchhhhcccCCCccccchhHHHHHHHHHHHhhhh------hccccccccceeeeeeeeh-ehHHHHHHHHhcC
Confidence            5677777665               3668899998544431      4444221       12222 2345567776322


Q ss_pred             cCCCCC----ccCCcccccccChhhHHHHHHHhcCCCCccCCCc------hhccccchHHHHHHHhhhh
Q psy6628          70 HQKEKP----YQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC------PLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus        70 ~~~~~~----~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C------~~~f~~~~~l~~H~~~~~~  128 (132)
                      -.++..    -.|..|...|.....|.+|+..++    |.|..|      ...|.....|..|.+..|-
T Consensus       173 d~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~Hf  237 (669)
T KOG2231|consen  173 DPDDESCRGHPLCKFCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGHF  237 (669)
T ss_pred             CCccccccCCccchhhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcCc
Confidence            221221    368889999999999999988654    455555      3466778888888877664

>smart00451 ZnF_U1 U1-like zinc finger

Probab=96.18  E-value=0.0031  Score=27.39  Aligned_cols=23  Identities=22%  Similarity=0.587  Sum_probs=19.1

Q ss_pred             CccCCCchhccccchHHHHHHHh
Q psy6628         103 PYACEFCPLTFRHSSHLFRHRRS  125 (132)
Q Consensus       103 ~~~C~~C~~~f~~~~~l~~H~~~  125 (132)
                      +|.|.+|++.|.....+..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            57899999999988888888764

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=95.69  E-value=0.0068  Score=29.11  Aligned_cols=29  Identities=24%  Similarity=0.555  Sum_probs=23.5

Q ss_pred             cceeeeCCCCccccCChhHHHHHHHhhcC
Q psy6628           8 HRVVFTCQVCSKIFSYENGLKAHVRNKHG   36 (132)
Q Consensus         8 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~   36 (132)
                      ++..+.||.||.+|....+..+|....++
T Consensus        14 GE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          14 GEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             CceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            66678899999999999889888876554

>KOG2893|consensus

Probab=95.66  E-value=0.0035  Score=39.45  Aligned_cols=41  Identities=22%  Similarity=0.441  Sum_probs=24.0

Q ss_pred             CCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHH
Q psy6628          78 CSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRH  122 (132)
Q Consensus        78 c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H  122 (132)
                      |..|++.|..+..|.+|++.    |.|+|.+|.+...+-..|..|
T Consensus        13 cwycnrefddekiliqhqka----khfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeecccccchhhhhhhhhhh----ccceeeeehhhhccCCCceee
Confidence            55566666666666666653    446677776655444444444

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=95.60  E-value=0.0081  Score=28.85  Aligned_cols=29  Identities=31%  Similarity=0.633  Sum_probs=18.7

Q ss_pred             cCCCCccCCCchhccccchHHHHHHHhhh
Q psy6628          99 TGEKPYACEFCPLTFRHSSHLFRHRRSLH  127 (132)
Q Consensus        99 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~  127 (132)
                      .||..+.|+.|++.|...-+..+|....|
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH   41 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAH   41 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence            45666777777777777666666655443

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=95.60  E-value=0.0074  Score=26.03  Aligned_cols=24  Identities=25%  Similarity=0.769  Sum_probs=14.5

Q ss_pred             ccCCcccccccChhhHHHHHHHhcCCCCccCCCchh
Q psy6628          76 YQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPL  111 (132)
Q Consensus        76 ~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~  111 (132)
                      |.|..||..+....            .++.|++|+.
T Consensus         2 ~~C~~CGy~y~~~~------------~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE------------APWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc------------CCCcCcCCCC
Confidence            46677766653321            6677777764

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=95.37  E-value=0.02  Score=24.75  Aligned_cols=23  Identities=30%  Similarity=0.723  Sum_probs=18.2

Q ss_pred             eeeCCCCccccCChhHHHHHHHh
Q psy6628          11 VFTCQVCSKIFSYENGLKAHVRN   33 (132)
Q Consensus        11 ~~~C~~C~~~f~~~~~l~~h~~~   33 (132)
                      .|.|..|++.|.+...+..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            47788888888888888888754

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG4173|consensus

Probab=95.10  E-value=0.014  Score=36.01  Aligned_cols=82  Identities=27%  Similarity=0.466  Sum_probs=59.5

Q ss_pred             CCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHH----------hcCCCCccCC--C
Q psy6628          41 RPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRV----------HTGEKPYACE--F  108 (132)
Q Consensus        41 ~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~----------h~~~~~~~C~--~  108 (132)
                      .+.+.|+.-+ |.++|........|..+.|.    -.|.+|.+.|...--|-.|+..          ..|.-.|+|-  .
T Consensus        77 ~~~~~cqvag-c~~~~d~lD~~E~hY~~~h~----~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEg  151 (253)
T KOG4173|consen   77 VPAFACQVAG-CCQVFDALDDYEHHYHTLHG----NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEG  151 (253)
T ss_pred             cccccccccc-hHHHHhhhhhHHHhhhhccc----chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHh
Confidence            3457787554 77788877777888744443    3799999999988888888653          2355679994  4


Q ss_pred             chhccccchHHHHHHHhhh
Q psy6628         109 CPLTFRHSSHLFRHRRSLH  127 (132)
Q Consensus       109 C~~~f~~~~~l~~H~~~~~  127 (132)
                      |+-.|...-....|+-..|
T Consensus       152 Ct~KFkT~r~RkdH~I~~H  170 (253)
T KOG4173|consen  152 CTEKFKTSRDRKDHMIRMH  170 (253)
T ss_pred             hhhhhhhhhhhhhHHHHhc
Confidence            9999998888888875433

>PRK04860 hypothetical protein; Provisional

Probab=95.09  E-value=0.03  Score=33.53  Aligned_cols=37  Identities=24%  Similarity=0.672  Sum_probs=27.0

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccCh
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSK   88 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~   88 (132)
                      |.|.    |+.   ...++..|. .+++++++|.|..|+..|...
T Consensus       120 Y~C~----C~~---~~~~~rrH~-ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        120 YRCK----CQE---HQLTVRRHN-RVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEcC----CCC---eeCHHHHHH-HHhcCCccEECCCCCceeEEe
Confidence            7774    654   445677887 778888888888888877654

>KOG1146|consensus

Probab=94.49  E-value=0.012  Score=45.49  Aligned_cols=25  Identities=32%  Similarity=0.612  Sum_probs=20.0

Q ss_pred             CCCccCCCchhccccchHHHHHHHh
Q psy6628         101 EKPYACEFCPLTFRHSSHLFRHRRS  125 (132)
Q Consensus       101 ~~~~~C~~C~~~f~~~~~l~~H~~~  125 (132)
                      .++|.|..|...++...+|-+|+..
T Consensus       516 ~~p~~C~~C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  516 GKPYPCRACNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             CCcccceeeeeeeecchHHHHHHHH
Confidence            4678888888888888888888753

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=93.86  E-value=0.036  Score=33.31  Aligned_cols=25  Identities=32%  Similarity=0.813  Sum_probs=20.2

Q ss_pred             CCccCCcccccccChhhHHHHHHHhcCCCCccCCCchh
Q psy6628          74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPL  111 (132)
Q Consensus        74 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~  111 (132)
                      +.|.|.+||..+             .++.|.+||+|+.
T Consensus       133 ~~~vC~vCGy~~-------------~ge~P~~CPiCga  157 (166)
T COG1592         133 KVWVCPVCGYTH-------------EGEAPEVCPICGA  157 (166)
T ss_pred             CEEEcCCCCCcc-------------cCCCCCcCCCCCC
Confidence            369999998774             4578999999983

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.06  E-value=0.16  Score=34.13  Aligned_cols=79  Identities=23%  Similarity=0.423  Sum_probs=40.3

Q ss_pred             eeCCC--CccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCccccc------ChHHHHhhhhhccCCCCCc----cCC
Q psy6628          12 FTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFT------TRNMLNIHIKRDHQKEKPY----QCS   79 (132)
Q Consensus        12 ~~C~~--C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~------~~~~l~~h~~~~~~~~~~~----~c~   79 (132)
                      |.||.  |..+...-..|..|..+.++      .+.|..|..-.+.|+      ....|..|. .....+-.|    .|.
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H~------~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~-~~G~~e~GFKGHP~C~  224 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQHG------FVLCSECIGNKKDFWNEIRLFRSSTLRDHK-NGGLEEEGFKGHPLCI  224 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhcC------cEEhHhhhcCcccCccceeeeecccccccc-cCCccccCcCCCchhh
Confidence            67776  66665556778888776554      144542211112222      223344443 222222112    466


Q ss_pred             cccccccChhhHHHHHHH
Q psy6628          80 QCSKSFFSKYDHKIHSRV   97 (132)
Q Consensus        80 ~C~~~~~~~~~l~~h~~~   97 (132)
                      .|..-|-....|.+|++.
T Consensus       225 FC~~~FYdDDEL~~HcR~  242 (493)
T COG5236         225 FCKIYFYDDDELRRHCRL  242 (493)
T ss_pred             hccceecChHHHHHHHHh
Confidence            677667677777777664

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=92.82  E-value=0.02  Score=39.17  Aligned_cols=56  Identities=32%  Similarity=0.554  Sum_probs=43.8

Q ss_pred             CccCCcccccccChhhHHHHHH--HhcCC--CCccCC--CchhccccchHHHHHHHhhhhhc
Q psy6628          75 PYQCSQCSKSFFSKYDHKIHSR--VHTGE--KPYACE--FCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus        75 ~~~c~~C~~~~~~~~~l~~h~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      ++.|..|...|.....+..|..  .|.++  +++.|+  .|++.|.....+..|...+.+..
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  350 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSIS  350 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCC
Confidence            5677778888888888888888  68888  888888  68888888888877776665543

>TIGR00622 ssl1 transcription factor ssl1

Probab=92.77  E-value=0.31  Score=27.33  Aligned_cols=24  Identities=29%  Similarity=0.686  Sum_probs=15.4

Q ss_pred             CccCCcccccccChhhHHHHHHHh
Q psy6628          75 PYQCSQCSKSFFSKYDHKIHSRVH   98 (132)
Q Consensus        75 ~~~c~~C~~~~~~~~~l~~h~~~h   98 (132)
                      .|+|..|...|...-++..|...|
T Consensus        81 ~y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        81 RYVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             ceeCCCCCCccccccchhhhhhcc
Confidence            466777777776666666665544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4173|consensus

Probab=92.76  E-value=0.03  Score=34.57  Aligned_cols=75  Identities=35%  Similarity=0.690  Sum_probs=49.2

Q ss_pred             eeCCC--CccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhcc---------CCCCCccCCc
Q psy6628          12 FTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDH---------QKEKPYQCSQ   80 (132)
Q Consensus        12 ~~C~~--C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~---------~~~~~~~c~~   80 (132)
                      +.|++  |.++|....+...|-.+-++       ..|.   .|.+.|+....|..|+...|         .|..-|+|-+
T Consensus        80 ~~cqvagc~~~~d~lD~~E~hY~~~h~-------~sCs---~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~Clv  149 (253)
T KOG4173|consen   80 FACQVAGCCQVFDALDDYEHHYHTLHG-------NSCS---FCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLV  149 (253)
T ss_pred             ccccccchHHHHhhhhhHHHhhhhccc-------chhH---HHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence            66776  55677666666666555444       5677   78888888877877764333         2344477755


Q ss_pred             --ccccccChhhHHHHHH
Q psy6628          81 --CSKSFFSKYDHKIHSR   96 (132)
Q Consensus        81 --C~~~~~~~~~l~~h~~   96 (132)
                        |+..|.....-..|+-
T Consensus       150 EgCt~KFkT~r~RkdH~I  167 (253)
T KOG4173|consen  150 EGCTEKFKTSRDRKDHMI  167 (253)
T ss_pred             HhhhhhhhhhhhhhhHHH
Confidence              7777777766666653

>KOG1146|consensus

Probab=92.69  E-value=0.033  Score=43.26  Aligned_cols=109  Identities=18%  Similarity=0.216  Sum_probs=69.1

Q ss_pred             eeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhH
Q psy6628          12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDH   91 (132)
Q Consensus        12 ~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l   91 (132)
                      ..|..|...|........+-.-........-.+.|.   +|...+.....+. ++-    ....|.|.+|...|.....+
T Consensus      1229 l~~~~~e~~f~~~~~~~~~a~~~~~~~~~sGe~~c~---~~~~~~~~~~~~~-~l~----~~~~~~~~~~~~~~~~~~~l 1300 (1406)
T KOG1146|consen 1229 LLPNALEQPFPQEPEPTATAPPKPPELPASGEGECG---AVDELLTPSFGIS-TLD----VTHRYLCRQCKMAFDGEAPL 1300 (1406)
T ss_pred             ccHHhhhcCccCcccccccCCCCCCcCcCCCcchhh---hccccccCcccee-ecc----cchhHHHHHHHhhhcchhHH
Confidence            445556666655554433322111100111125666   7877777666555 442    23468999999999999999


Q ss_pred             HHHHHHh-----------------cCCCCccCCCchhccccchHHHHHHHhhhhh
Q psy6628          92 KIHSRVH-----------------TGEKPYACEFCPLTFRHSSHLFRHRRSLHQM  129 (132)
Q Consensus        92 ~~h~~~h-----------------~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  129 (132)
                      ..|.+.-                 ..-++| |..|...|.....|+.|+++.+.+
T Consensus      1301 ~~~~~k~~~~~~~~~~~~~~~l~~~d~~~~-c~~c~~~~~~~~alqihm~~~~~~ 1354 (1406)
T KOG1146|consen 1301 TAHQRKFCFAGRGSGGSMPPPLRVPDCTYH-CLACEVLLSGREALQIHMRSSAHR 1354 (1406)
T ss_pred             HHHHHHHHhccCccccCCCCcccCcccccc-chHHHhhcchhHHHHHHHHHhhhc
Confidence            8887531                 122456 999999999999999999875443

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=92.64  E-value=0.071  Score=23.11  Aligned_cols=24  Identities=25%  Similarity=0.653  Sum_probs=14.9

Q ss_pred             ccCCcccccccChhhHHHHHHHhcCCCCccCCCchh
Q psy6628          76 YQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPL  111 (132)
Q Consensus        76 ~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~  111 (132)
                      |.|..||..+...            +.|..|++|+.
T Consensus         3 ~~C~~CG~i~~g~------------~~p~~CP~Cg~   26 (34)
T cd00729           3 WVCPVCGYIHEGE------------EAPEKCPICGA   26 (34)
T ss_pred             EECCCCCCEeECC------------cCCCcCcCCCC
Confidence            6677777665332            24567777774

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.07  E-value=0.13  Score=23.56  Aligned_cols=28  Identities=29%  Similarity=0.586  Sum_probs=15.7

Q ss_pred             CCCCccCCCchhcccc----chHHHHHHHhhh
Q psy6628         100 GEKPYACEFCPLTFRH----SSHLFRHRRSLH  127 (132)
Q Consensus       100 ~~~~~~C~~C~~~f~~----~~~l~~H~~~~~  127 (132)
                      ++.-..|..|++.+..    .+.|..|++..|
T Consensus        13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~h   44 (45)
T PF02892_consen   13 DKKKAKCKYCGKVIKYSSGGTSNLKRHLKKKH   44 (45)
T ss_dssp             CSS-EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred             CcCeEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence            3455677777776654    477778875433

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=92.00  E-value=0.083  Score=33.17  Aligned_cols=30  Identities=20%  Similarity=0.418  Sum_probs=20.2

Q ss_pred             CCCccCCCchhccccchHHHHHHHhhhhhc
Q psy6628         101 EKPYACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus       101 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      +.-|.|++|+|.|....-+++|+...|.++
T Consensus        75 ~~K~~C~lc~KlFkg~eFV~KHI~nKH~e~  104 (214)
T PF04959_consen   75 EDKWRCPLCGKLFKGPEFVRKHIFNKHPEK  104 (214)
T ss_dssp             SEEEEE-SSS-EESSHHHHHHHHHHH-HHH
T ss_pred             CCEECCCCCCcccCChHHHHHHHhhcCHHH
Confidence            345888888888888888888887776654

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>KOG2893|consensus

Probab=91.01  E-value=0.059  Score=34.15  Aligned_cols=46  Identities=35%  Similarity=0.636  Sum_probs=32.8

Q ss_pred             CCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhcc
Q psy6628          14 CQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDH   70 (132)
Q Consensus        14 C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~   70 (132)
                      |=.|++.|.+..-|.+|+...+        |+|.   +|.+.......|..|..+.|
T Consensus        13 cwycnrefddekiliqhqkakh--------fkch---ichkkl~sgpglsihcmqvh   58 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQKAKH--------FKCH---ICHKKLFSGPGLSIHCMQVH   58 (341)
T ss_pred             eeecccccchhhhhhhhhhhcc--------ceee---eehhhhccCCCceeehhhhh
Confidence            6678899999999988887543        7888   77777665555666643334

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=90.81  E-value=0.13  Score=29.85  Aligned_cols=27  Identities=30%  Similarity=0.456  Sum_probs=13.2

Q ss_pred             CCCccCCCchhccccchHHHHHHHhhhhhc
Q psy6628         101 EKPYACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus       101 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      +.-..|-+||+.|.   .|.+|+..|||..
T Consensus        70 ~d~i~clecGk~~k---~LkrHL~~~~glt   96 (132)
T PF05443_consen   70 PDYIICLECGKKFK---TLKRHLRTHHGLT   96 (132)
T ss_dssp             SS-EE-TBT--EES---BHHHHHHHTT-S-
T ss_pred             cCeeEEccCCcccc---hHHHHHHHccCCC
Confidence            34466667777665   3467777776644

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=90.69  E-value=0.18  Score=28.15  Aligned_cols=30  Identities=27%  Similarity=0.685  Sum_probs=17.2

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccCh
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSK   88 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~   88 (132)
                      ..|+   .||..|....            ..|..|+.||..|.-.
T Consensus        10 R~Cp---~CG~kFYDLn------------k~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCP---SCGAKFYDLN------------KDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCC---CCcchhccCC------------CCCccCCCCCCccCcc
Confidence            4566   6666666431            1355677777666544

The function of members of this family is unknown.

>KOG2186|consensus

Probab=90.66  E-value=0.14  Score=32.77  Aligned_cols=46  Identities=24%  Similarity=0.592  Sum_probs=28.1

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHH
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSR   96 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~   96 (132)
                      |.|.   .|+....-. .+..|+.+ -.+ ..|.|..|+..|.. .....|..
T Consensus         4 FtCn---vCgEsvKKp-~vekH~sr-Crn-~~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    4 FTCN---VCGESVKKP-QVEKHMSR-CRN-AYFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             Eehh---hhhhhcccc-chHHHHHh-ccC-CeeEEeeccccccc-chhhhhhh
Confidence            6677   777665543 35667633 333 45778888888766 44555544

>PF12907 zf-met2: Zinc-binding

Probab=90.62  E-value=0.068  Score=24.11  Aligned_cols=27  Identities=26%  Similarity=0.503  Sum_probs=18.4

Q ss_pred             ccCCCchhccc---cchHHHHHHHhhhhhc
Q psy6628         104 YACEFCPLTFR---HSSHLFRHRRSLHQMY  130 (132)
Q Consensus       104 ~~C~~C~~~f~---~~~~l~~H~~~~~~~~  130 (132)
                      +.|.+|...|.   ....|..|....|.+.
T Consensus         2 i~C~iC~qtF~~t~~~~~L~eH~enKHpK~   31 (40)
T PF12907_consen    2 IICKICRQTFMQTTNEPQLKEHAENKHPKN   31 (40)
T ss_pred             cCcHHhhHHHHhcCCHHHHHHHHHccCCCC
Confidence            57888887664   4466888877666554

>KOG2482|consensus

Probab=89.91  E-value=0.42  Score=32.11  Aligned_cols=49  Identities=20%  Similarity=0.320  Sum_probs=37.3

Q ss_pred             ccCCcccccccChhhHHHHHHHhcC---------------------------CCCccCCCchhccccchHHHHHHH
Q psy6628          76 YQCSQCSKSFFSKYDHKIHSRVHTG---------------------------EKPYACEFCPLTFRHSSHLFRHRR  124 (132)
Q Consensus        76 ~~c~~C~~~~~~~~~l~~h~~~h~~---------------------------~~~~~C~~C~~~f~~~~~l~~H~~  124 (132)
                      ..|..|.....+...|..||+.-+.                           .+.-.|..|.-.|-....|..|+.
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~  355 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMV  355 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcc
Confidence            5788898888888889999874221                           123566778889999999999975

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=89.85  E-value=0.049  Score=34.26  Aligned_cols=14  Identities=14%  Similarity=0.451  Sum_probs=9.8

Q ss_pred             CccCCCchhccccc
Q psy6628         103 PYACEFCPLTFRHS  116 (132)
Q Consensus       103 ~~~C~~C~~~f~~~  116 (132)
                      .+.||.||.+|...
T Consensus        48 V~vCP~CgyA~~~~   61 (214)
T PF09986_consen   48 VWVCPHCGYAAFEE   61 (214)
T ss_pred             EEECCCCCCccccc
Confidence            47888888766543

>smart00614 ZnF_BED BED zinc finger

Probab=89.23  E-value=0.3  Score=23.05  Aligned_cols=22  Identities=36%  Similarity=0.680  Sum_probs=14.3

Q ss_pred             ccCCCchhccccc-----hHHHHHHHh
Q psy6628         104 YACEFCPLTFRHS-----SHLFRHRRS  125 (132)
Q Consensus       104 ~~C~~C~~~f~~~-----~~l~~H~~~  125 (132)
                      -.|..|++.+...     ++|.+|+..
T Consensus        19 a~C~~C~~~l~~~~~~gTs~L~rHl~~   45 (50)
T smart00614       19 AKCKYCGKKLSRSSKGGTSNLRRHLRR   45 (50)
T ss_pred             EEecCCCCEeeeCCCCCcHHHHHHHHh
Confidence            4566676666543     577788774

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=89.16  E-value=0.27  Score=21.59  Aligned_cols=11  Identities=36%  Similarity=1.014  Sum_probs=5.9

Q ss_pred             CccCCcccccc
Q psy6628          75 PYQCSQCSKSF   85 (132)
Q Consensus        75 ~~~c~~C~~~~   85 (132)
                      ..+|..|+..|
T Consensus        25 ~v~C~~C~~~f   35 (36)
T PF13717_consen   25 KVRCSKCGHVF   35 (36)
T ss_pred             EEECCCCCCEe
Confidence            34566665544

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=89.02  E-value=0.47  Score=19.16  Aligned_cols=19  Identities=32%  Similarity=0.625  Sum_probs=13.1

Q ss_pred             eCCCCccccCChhHHHHHHH
Q psy6628          13 TCQVCSKIFSYENGLKAHVR   32 (132)
Q Consensus        13 ~C~~C~~~f~~~~~l~~h~~   32 (132)
                      .||+|++.+ ....+..|+.
T Consensus         3 ~CPiC~~~v-~~~~in~HLD   21 (26)
T smart00734        3 QCPVCFREV-PENLINSHLD   21 (26)
T ss_pred             cCCCCcCcc-cHHHHHHHHH
Confidence            588888877 4466666654

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=88.57  E-value=0.33  Score=27.06  Aligned_cols=25  Identities=28%  Similarity=0.578  Sum_probs=20.4

Q ss_pred             ccC----CCchhccccchHHHHHHHhhhh
Q psy6628         104 YAC----EFCPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus       104 ~~C----~~C~~~f~~~~~l~~H~~~~~~  128 (132)
                      |.|    ..|+..+.+...+.+|.+.+||
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            777    7888888888888888888775

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=88.47  E-value=0.68  Score=22.74  Aligned_cols=9  Identities=44%  Similarity=1.438  Sum_probs=5.0

Q ss_pred             CccCCcccc
Q psy6628          75 PYQCSQCSK   83 (132)
Q Consensus        75 ~~~c~~C~~   83 (132)
                      +|.|+.||.
T Consensus        50 ~Y~Cp~CGF   58 (61)
T COG2888          50 PYRCPKCGF   58 (61)
T ss_pred             ceECCCcCc
Confidence            456666653

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=88.39  E-value=0.2  Score=23.22  Aligned_cols=8  Identities=25%  Similarity=1.011  Sum_probs=3.7

Q ss_pred             ccCCCchh
Q psy6628         104 YACEFCPL  111 (132)
Q Consensus       104 ~~C~~C~~  111 (132)
                      ..|+.||.
T Consensus        22 ~~Cp~CG~   29 (46)
T PRK00398         22 VRCPYCGY   29 (46)
T ss_pred             eECCCCCC
Confidence            44444443

>KOG2482|consensus

Probab=87.64  E-value=1.4  Score=29.82  Aligned_cols=25  Identities=28%  Similarity=0.709  Sum_probs=21.0

Q ss_pred             ccCCCchhccccchHHHHHHHhhhh
Q psy6628         104 YACEFCPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus       104 ~~C~~C~~~f~~~~~l~~H~~~~~~  128 (132)
                      .+|-.|....-....|..|++..|.
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe  304 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHE  304 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHH
Confidence            5888898888888899999988765

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=86.34  E-value=0.4  Score=30.97  Aligned_cols=41  Identities=22%  Similarity=0.475  Sum_probs=24.1

Q ss_pred             cccccceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccC
Q psy6628           4 VHNIHRVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCE   47 (132)
Q Consensus         4 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~   47 (132)
                      +|..+.++|.|..|..-+ ..-.--+|+..-.... .. .|+|.
T Consensus       135 vw~hGGrif~CsfC~~fl-CEDDQFEHQAsCQvLe-~E-~~KC~  175 (314)
T PF06524_consen  135 VWDHGGRIFKCSFCDNFL-CEDDQFEHQASCQVLE-SE-TFKCQ  175 (314)
T ss_pred             cccCCCeEEEeecCCCee-eccchhhhhhhhhhhh-cc-ccccc
Confidence            566788999999998743 3333344665432221 12 37776

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>KOG2785|consensus

Probab=85.90  E-value=0.81  Score=31.22  Aligned_cols=79  Identities=22%  Similarity=0.335  Sum_probs=44.8

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCC----CCCcc-CCcccccccChhhHHHH---HHHhcCCCCccCCCchhcccc
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQK----EKPYQ-CSQCSKSFFSKYDHKIH---SRVHTGEKPYACEFCPLTFRH  115 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~----~~~~~-c~~C~~~~~~~~~l~~h---~~~h~~~~~~~C~~C~~~f~~  115 (132)
                      |+|.   .|...|........|++.....    .+... .++-...|...-....-   .....++-++.|.+|.+.|..
T Consensus         4 ftC~---tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s   80 (390)
T KOG2785|consen    4 FTCN---TCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFAS   80 (390)
T ss_pred             ceee---ceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccC
Confidence            8898   8999999887777777422111    01111 11111222111111000   111344568999999999999


Q ss_pred             chHHHHHHHh
Q psy6628         116 SSHLFRHRRS  125 (132)
Q Consensus       116 ~~~l~~H~~~  125 (132)
                      ......|+..
T Consensus        81 ~~a~~~hl~S   90 (390)
T KOG2785|consen   81 PKAHENHLKS   90 (390)
T ss_pred             hhhHHHHHHH
Confidence            9888888764

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=85.58  E-value=0.23  Score=23.58  Aligned_cols=11  Identities=27%  Similarity=1.099  Sum_probs=5.8

Q ss_pred             cccCCCCCCccccc
Q psy6628          44 FKCEGRGECDRVFT   57 (132)
Q Consensus        44 ~~c~~~~~c~~~~~   57 (132)
                      |.|.   .|+..|.
T Consensus         6 y~C~---~Cg~~fe   16 (52)
T TIGR02605         6 YRCT---ACGHRFE   16 (52)
T ss_pred             EEeC---CCCCEeE
Confidence            4555   5555554

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=85.45  E-value=0.29  Score=33.51  Aligned_cols=61  Identities=30%  Similarity=0.556  Sum_probs=44.6

Q ss_pred             cccCCCCCCcccccChHHHHhhhhh-ccCCC--CCccCC--cccccccChhhHHHHHHHhcCCCCccCC
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKR-DHQKE--KPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYACE  107 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~-~~~~~--~~~~c~--~C~~~~~~~~~l~~h~~~h~~~~~~~C~  107 (132)
                      +.|.   .|...|.....+..|... .|.++  +++.|.  .|++.|.....+..|...|.+..+..+.
T Consensus       290 ~~~~---~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (467)
T COG5048         290 IKSK---QCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEK  355 (467)
T ss_pred             CCCc---cccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccc
Confidence            5555   677777777777777732 67777  788888  6888888888888888877776665553

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=83.47  E-value=1  Score=19.79  Aligned_cols=10  Identities=30%  Similarity=1.075  Sum_probs=4.7

Q ss_pred             ccCCcccccc
Q psy6628          76 YQCSQCSKSF   85 (132)
Q Consensus        76 ~~c~~C~~~~   85 (132)
                      .+|..|+..|
T Consensus        26 vrC~~C~~~f   35 (37)
T PF13719_consen   26 VRCPKCGHVF   35 (37)
T ss_pred             EECCCCCcEe
Confidence            4455554443

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=82.94  E-value=1.3  Score=26.52  Aligned_cols=32  Identities=13%  Similarity=0.304  Sum_probs=19.8

Q ss_pred             CCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhcc
Q psy6628          73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTF  113 (132)
Q Consensus        73 ~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f  113 (132)
                      ..-|.|+.|+..|.+...+.         .-|.|+.||...
T Consensus       107 ~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~L  138 (158)
T TIGR00373       107 NMFFICPNMCVRFTFNEAME---------LNFTCPRCGAML  138 (158)
T ss_pred             CCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCEe
Confidence            34566777777776665553         247777777543

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=82.75  E-value=0.87  Score=18.05  Aligned_cols=11  Identities=36%  Similarity=0.781  Sum_probs=8.5

Q ss_pred             ceeeeCCCCcc
Q psy6628           9 RVVFTCQVCSK   19 (132)
Q Consensus         9 ~~~~~C~~C~~   19 (132)
                      ...|.||.||+
T Consensus        14 ~v~f~CPnCG~   24 (24)
T PF07754_consen   14 AVPFPCPNCGF   24 (24)
T ss_pred             CceEeCCCCCC
Confidence            45699999984

It is likely to bind zinc via its four well-conserved cysteine residues.

>KOG4167|consensus

Probab=82.62  E-value=0.28  Score=36.23  Aligned_cols=28  Identities=25%  Similarity=0.579  Sum_probs=24.6

Q ss_pred             ceeeeCCCCccccCChhHHHHHHHhhcC
Q psy6628           9 RVVFTCQVCSKIFSYENGLKAHVRNKHG   36 (132)
Q Consensus         9 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~   36 (132)
                      .-.|.|.+|+++|.....+..||..|..
T Consensus       790 ~giFpCreC~kvF~KiKSrNAHMK~Hr~  817 (907)
T KOG4167|consen  790 TGIFPCRECGKVFFKIKSRNAHMKTHRQ  817 (907)
T ss_pred             CceeehHHHHHHHHHHhhhhHHHHHHHH
Confidence            3469999999999999999999998863

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=82.31  E-value=0.9  Score=20.95  Aligned_cols=8  Identities=25%  Similarity=0.966  Sum_probs=3.8

Q ss_pred             ccCCcccc
Q psy6628          76 YQCSQCSK   83 (132)
Q Consensus        76 ~~c~~C~~   83 (132)
                      ..|+.||.
T Consensus        20 irC~~CG~   27 (44)
T smart00659       20 VRCRECGY   27 (44)
T ss_pred             eECCCCCc
Confidence            44555543

present in RNA polymerase I, II and III

>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO

Probab=81.63  E-value=1.7  Score=19.60  Aligned_cols=23  Identities=13%  Similarity=0.348  Sum_probs=14.0

Q ss_pred             ccCCCchhccc--cchHHHHHHHhh
Q psy6628         104 YACEFCPLTFR--HSSHLFRHRRSL  126 (132)
Q Consensus       104 ~~C~~C~~~f~--~~~~l~~H~~~~  126 (132)
                      -.|+.|+..|.  ...+-..|.+.|
T Consensus        14 ~~C~~CgM~Y~~~~~eD~~~H~~yH   38 (41)
T PF13878_consen   14 TTCPTCGMLYSPGSPEDEKLHKKYH   38 (41)
T ss_pred             cCCCCCCCEECCCCHHHHHHHHHHH
Confidence            47777777665  345555665544

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=81.45  E-value=0.28  Score=29.24  Aligned_cols=13  Identities=31%  Similarity=0.692  Sum_probs=8.0

Q ss_pred             ccCCcccccccCh
Q psy6628          76 YQCSQCSKSFFSK   88 (132)
Q Consensus        76 ~~c~~C~~~~~~~   88 (132)
                      ++|+.||..|...
T Consensus        29 ~~c~~c~~~f~~~   41 (154)
T PRK00464         29 RECLACGKRFTTF   41 (154)
T ss_pred             eeccccCCcceEe
Confidence            5666676666543

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=81.26  E-value=1.2  Score=25.52  Aligned_cols=30  Identities=17%  Similarity=0.256  Sum_probs=18.8

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccCh
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSK   88 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~   88 (132)
                      ..|+   .|+..|....            ..|..|+.||..|.-.
T Consensus        10 r~Cp---~cg~kFYDLn------------k~p~vcP~cg~~~~~~   39 (129)
T TIGR02300        10 RICP---NTGSKFYDLN------------RRPAVSPYTGEQFPPE   39 (129)
T ss_pred             ccCC---CcCccccccC------------CCCccCCCcCCccCcc
Confidence            5677   7777766431            2466777777776554

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=80.29  E-value=1.8  Score=21.32  Aligned_cols=9  Identities=44%  Similarity=1.383  Sum_probs=5.6

Q ss_pred             CccCCcccc
Q psy6628          75 PYQCSQCSK   83 (132)
Q Consensus        75 ~~~c~~C~~   83 (132)
                      +|.|+.||.
T Consensus        48 ~Y~CP~CGF   56 (59)
T PRK14890         48 PYTCPKCGF   56 (59)
T ss_pred             ceECCCCCC
Confidence            466766654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	132
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		3e-13
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		2e-05
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		3e-09
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		4e-09
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		2e-08
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		3e-08
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		3e-08
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		4e-08
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		4e-08
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		4e-08
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		6e-08
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		6e-08
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		7e-08
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		1e-07
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		4e-07
2cot_A	77	Solution Structure Of The First And Second Zf-C2h2		7e-07
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		1e-06
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		3e-06
3uk3_C	57	Crystal Structure Of Znf217 Bound To Dna Length = 5		1e-05
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		1e-05
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		1e-05
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		3e-05
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		4e-05
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		4e-05
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		2e-04
2ep1_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		5e-05
2ytf_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		7e-05
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		9e-05
2yrj_A	46	Solution Structure Of The C2h2-Type Zinc Finger Dom		9e-05
2ysp_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		9e-05
1x6e_A	72	Solution Structures Of The C2h2 Type Zinc Finger Do		1e-04
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		1e-04
2ytq_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-04
2ep2_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-04
2dlk_A	79	Solution Structure Of The First And The Second Zf-C		2e-04
2eog_A	44	Solution Structure Of The C2h2 Type Zinc Finger (Re		2e-04
2yta_A	41	Solution Structure Of C2h2 Type Zinc Finger Domain		3e-04
2yts_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		3e-04
2ytb_A	42	Solution Structure Of C2h2 Type Zinc Finger Domain		4e-04
2emj_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		5e-04
2ep3_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		6e-04
2em7_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		7e-04
2eof_A	44	Solution Structure Of The C2h2 Type Zinc Finger (Re		8e-04
2en6_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		8e-04
2eor_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		8e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
           + C  C K FS  + L  H R   G   E+P +KC    EC + F+ +  L  H +R H 
Sbjct: 22  YACPECGKSFSRSDHLAEHQRTHTG---EKP-YKCP---ECGKSFSDKKDLTRH-QRTHT 73
Query: 72  KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
            EKPY+C +C KSF  + + + H R HTGEKPYAC  C
Sbjct: 74  GEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPEC 111

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/38 (60%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 73  EKPYQCSQCSKSFFSKYDHKI-HSRVHTGEKPYACEFC 109
           EKPY C +C KSF S+ DH   H R HTGEKPY C  C
Sbjct: 19  EKPYACPECGKSF-SRSDHLAEHQRTHTGEKPYKCPEC 55

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 40  ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
           E+P +KC    EC + F+  + L  H +R H  EKPY+C +C KSF    D + H R HT
Sbjct: 2   EKP-YKCP---ECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHT 56
Query: 100 GEKPYACEFC 109
           GEKPY C  C
Sbjct: 57  GEKPYKCPEC 66

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 52  CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
           CDR F+ +  L+ HI R H  +KP+QC  C ++F  +     H R HTGEKP+AC+ C
Sbjct: 12  CDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDIC 68

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 52  CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
           CDR F+ +  L+ HI R H  +KP+QC  C ++F        H R HTGEKP+AC+ C
Sbjct: 12  CDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDIC 68

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 52  CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDH-KIHSRVHTGEKPYACEFC 109
           CDR F+  + L  HI R H  +KP+QC  C ++F S+ DH   H R HTGEKP+AC+ C
Sbjct: 12  CDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNF-SRSDHLTTHIRTHTGEKPFACDIC 68

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 52  CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDH-KIHSRVHTGEKPYACEFC 109
           CDR F+  + L  HI R H  +KP+QC  C ++F S+ DH   H R HTGEKP+AC+ C
Sbjct: 11  CDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNF-SRSDHLTTHIRTHTGEKPFACDIC 67

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 52  CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDH-KIHSRVHTGEKPYACEFC 109
           CDR F+    L  HI R H  +KP+QC  C ++F S+ DH   H R HTGEKP+AC+ C
Sbjct: 12  CDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNF-SRSDHLTTHIRTHTGEKPFACDIC 68

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 52  CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDH-KIHSRVHTGEKPYACEFC 109
           CDR F+  + L  HI R H  +KP+QC  C ++F S+ DH   H R HTGEKP+AC+ C
Sbjct: 12  CDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNF-SRSDHLTTHIRTHTGEKPFACDIC 68

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 52  CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDH-KIHSRVHTGEKPYACEFC 109
           CDR F+  + L  HI R H  +KP+QC  C ++F S+ DH   H R HTGEKP+AC+ C
Sbjct: 12  CDRRFSDSSNLTRHI-RIHTGQKPFQCRICMRNF-SRSDHLTTHIRTHTGEKPFACDIC 68

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 8/93 (8%)
Query: 17  CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPY 76
           C+K +   + L+ H R   G   E+P ++C+ + +C+R F+  + L  H +R H   KP+
Sbjct: 14  CNKRYFKLSHLQMHSRKHTG---EKP-YQCDFK-DCERRFSRSDQLKRHQRR-HTGVKPF 67
Query: 77  QCSQCSKSFFSKYDH-KIHSRVHTGEKPYACEF 108
           QC  C + F S+ DH K H+R HTGEKP++C +
Sbjct: 68  QCKTCQRKF-SRSDHLKTHTRTHTGEKPFSCRW 99

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 52  CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDH-KIHSRVHTGEKPYACEFC 109
           CDR F+    L  HI R H  +KP+QC  C ++F S+ DH   H R HTGEKP+AC+ C
Sbjct: 12  CDRRFSRSAELTRHI-RIHTGQKPFQCRICMRNF-SRSDHLTTHIRTHTGEKPFACDIC 68

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 52  CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDH-KIHSRVHTGEKPYACEFC 109
           CDR F+    L  HI R H  +KP+QC  C ++F S+ DH   H R HTGEKP+AC+ C
Sbjct: 12  CDRRFSRSADLTRHI-RIHTGQKPFQCRICMRNF-SRSDHLTTHIRTHTGEKPFACDIC 68

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 17  CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDR---VFTTRNMLNIHIKRDHQKE 73
           CS+ F  +  L  H+ ++H   E R  F C   G C R    F  + ML +H++R H  E
Sbjct: 9   CSQEFDSQEQLVHHINSEHIHGE-RKEFVCHW-GGCSRELRPFKAQYMLVVHMRR-HTGE 65
Query: 74  KPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYACE 107
           KP++C+   C KS+    + K H R HTGEKPY CE
Sbjct: 66  KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 17  CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDR---VFTTRNMLNIHIKRDHQKE 73
           C + FS  + L  HV  +H    E+    C    EC R    F  +  L  HI R H  E
Sbjct: 31  CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE-ECPREGKSFKAKYKLVNHI-RVHTGE 88
Query: 74  KPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYACEF 108
           KP+ C    C K F    + KIH R HTGEKP+ CEF
Sbjct: 89  KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEF 125

>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of Zinc Finger Protein 435 Length = 77

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 40  ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
           ER R+KC+   EC + F+  + L+ H +R H  EKPY+C +C K+F  +     H RVHT
Sbjct: 15  ERRRYKCD---ECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Query: 100 GEKP 103
           G  P
Sbjct: 71  GSGP 74

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 17  CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPY 76
           C+K+F   + ++ H+ + HG     PR       EC + F   + L  H +  H  EKP+
Sbjct: 13  CTKMFRDNSAMRKHL-HTHG-----PRVHVCA--ECGKAFVESSKLKRH-QLVHTGEKPF 63
Query: 77  QCS--QCSKSFFSKYDHKIHSRVHTGEKPYACEF 108
           QC+   C K F   ++ + H R+HTG++PY C F
Sbjct: 64  QCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPF 97

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 52  CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
           C + F   + L+ H+   H   +PY C  C K F  K D K H+ +HTGEKP+ C+ C
Sbjct: 7   CGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63

>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna Length = 57

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/33 (63%), Positives = 22/33 (66%)
Query: 77  QCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
           +CS C K F S Y   IH R HTGEKPY CEFC
Sbjct: 6   ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFC 38

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 36  GSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHS 95
           GSS      KCE  G+C   F+ ++ L  H+ R H   KPY+C  C  +         H 
Sbjct: 1   GSSGSSGPHKCEVCGKC---FSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKHL 56
Query: 96  RVHTGEKPYACEFCP 110
           R+H+ E+P+ C+ CP
Sbjct: 57  RIHSDERPFKCQICP 71

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 17 CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPY 76
          C+K+++  + LKAH+R   G   E+P +KC   G CD  F   + L  H  R H   KP+
Sbjct: 23 CTKVYTKSSHLKAHLRTHTG---EKP-YKCTWEG-CDWRFARSDELTRHY-RKHTGAKPF 76
Query: 77 QCSQCSKSFFSKYDH 91
          QC  C++S FS+ DH
Sbjct: 77 QCGVCNRS-FSRSDH 90

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 74  KPYQCSQCSKSFFSKYDH-KIHSRVHTGEKPYACEFC 109
           KP+QC  C ++F S+ DH   H R HTGEKP+AC+ C
Sbjct: 2   KPFQCRICMRNF-SRSDHLTTHIRTHTGEKPFACDIC 37

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 73  EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
           +KPY+C +C  SF  K +   H  VHTGEKPY C  C
Sbjct: 15  DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNIC 51

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 14  CQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD--HQ 71
           C  C K F  +  LK H R   G   E+P F+C   G+C   F   N+L  H  R+  ++
Sbjct: 10  CPTCHKKFLSKYYLKVHNRKHTG---EKP-FECPKCGKC--YFRKENLLE-HEARNCMNR 62
Query: 72  KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
            E+ + CS C ++F  + + ++H   HTGE PY C  C
Sbjct: 63  SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSC 100

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 77  QCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
           +C  C K F SKY  K+H+R HTGEKP+ C  C
Sbjct: 9   ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKC 41

>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 435- 467) Of Human Zinc Finger Protein 484 Length = 46

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 73  EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
           EKPY+CS C KSF  K    +H R+HTGE P  
Sbjct: 10  EKPYECSDCGKSFIKKSQLHVHQRIHTGENPSG 42

>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 607- 639) Of Human Zinc Finger Protein 268 Length = 46

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 73  EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
           EKP++CS+C K+F +K +  +H R HTGEKP  
Sbjct: 10  EKPFECSECQKAFNTKSNLIVHQRTHTGEKPSG 42

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 51  ECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
           +C + FT ++  + H+   H   +PY C  C K F  K+    H ++HTG KPY C  C
Sbjct: 14  QCGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC 71

>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain (781- 813) From Zinc Finger Protein 473 Length = 46

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 73  EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
           EKPY+C +C K+F  K +   H R+HTGEKP
Sbjct: 10  EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40

>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 507- 539) Of Human Zinc Finger Protein 224 Length = 46

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 73  EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
           EKPY+C +C K + SK++  +H +VHTGE+P
Sbjct: 10  EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40

>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of Human Zinc Finger Protein 24 Length = 72

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 22/37 (59%)
Query: 73  EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
           EKPY C +C K+F        H RVHTGEKPY C  C
Sbjct: 12  EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLEC 48

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 52  CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
           C R FT    L IH +R H  E+PY C  C K+F  +   + H  +H+ EKP+ C+ C
Sbjct: 23  CGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79

>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 775- 807) Of Human Zinc Finger Protein 268 Length = 46

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 73  EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
           EKPY CS+C K+F SK    IH R H+GEKP
Sbjct: 10  EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40

>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 603- 635) Of Human Zinc Finger Protein 484 Length = 46

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 73  EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
           EKPY+CS C KSF  K    +H ++HTGEKP
Sbjct: 10  EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40

>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2 Domains Of Zinc Finger Protein 692 Length = 79

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 52  CDRVFTTRNMLNIHIKRDHQKEKPYQCSQ--CSKSFFSKYDHKIHSRVHTGEKPYACEF 108
           C R+F+ R  LN H K  H  +K + C +  C KSF  K   K H ++H+  + Y CEF
Sbjct: 15  CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73

>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 693- 723) Of Human Zinc Finger Protein 268 Length = 44

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 74  KPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
           KPY CS+C K+F SK    IH R HTGEKP
Sbjct: 9   KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38

>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In Zinc Finger Protein 32 Length = 41

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 73  EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
           EKPYQC +C KSF  +    +H R+HTG  P
Sbjct: 8   EKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38

>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 715- 747) Of Human Zinc Finger Protein 484 Length = 46

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 73  EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
           EKPY C++C KSF  K     H R+HTGEKP  
Sbjct: 10  EKPYICNECGKSFIQKSHLNRHRRIHTGEKPSG 42

>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In Zinc Finger Protein 32 Length = 42

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 73  EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
           EKPY+C QC K+F  K    +H RVHTG  P
Sbjct: 9   EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39

>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 612- 644) Of Human Zinc Finger Protein 28 Homolog Length = 46

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 73  EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
           EKP++C++C KSF        H R+HTGEKP
Sbjct: 10  EKPFECAECGKSFSISSQLATHQRIHTGEKP 40

>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 631- 663) Of Human Zinc Finger Protein 484 Length = 46

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 73  EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
           EKPY+C++C K+F  + +   H ++HTGEKP
Sbjct: 10  EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40

>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 339- 371) Of Human Zinc Finger Protein 224 Length = 46

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 73  EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
           EKPY+C +C K F  + D   H  VHTGEKP
Sbjct: 10  EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40

>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 411- 441) Of Human Zinc Finger Protein 268 Length = 44

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 73  EKPYQCSQCSKSFFSKYDHKIHSRVHTGE 101
           EKPY+C++C K+F +K +  +H R HTGE
Sbjct: 10  EKPYECNECQKAFNTKSNLMVHQRTHTGE 38

>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 887- 919) Of Human Zinc Finger Protein 268 Length = 46

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 73  EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
           EKPY C++C K+F  K     H R HTGEKP
Sbjct: 10  EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40

>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 255- 287) Of Human Zinc Finger Protein 224 Length = 46

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 73  EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
           EKPY C +C K+F      + H R+HTGEKP
Sbjct: 10  EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-25
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-17
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	3e-16
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-12
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	5e-07
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-04
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-24
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-19
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-17
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-11
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	6e-24
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-13
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	4e-22
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-16
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-14
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	5e-22
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-14
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	6e-22
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	3e-18
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	4e-17
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	8e-22
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-21
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	5e-19
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	7e-17
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-13
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-08
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	4e-21
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	9e-15
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	5e-11
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	6e-20
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	8e-18
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-16
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-04
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-19
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-17
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-16
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	8e-16
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-12
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	3e-19
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	9e-19
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	3e-18
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	1e-14
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	8e-07
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	9e-19
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-16
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	4e-18
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	5e-12
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-10
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	7e-18
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-13
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	6e-11
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-17
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	7e-13
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-17
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	3e-13
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	5e-17
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	1e-15
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	5e-14
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	1e-16
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	7e-12
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	2e-16
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	5e-12
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	2e-08
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	9e-16
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	1e-15
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	3e-15
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	1e-13
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	5e-15
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	2e-08
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	5e-15
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-13
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	6e-15
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	6e-11
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	5e-09
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-14
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	5e-05
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	4e-12
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	3e-06
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-12
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-07
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	9e-12
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	1e-06
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	9e-12
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	6e-08
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-11
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	8e-08
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-11
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-07
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-11
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-08
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-11
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-07
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-11
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-07
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-11
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-08
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-11
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-07
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	2e-11
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	9e-08
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-11
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-07
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-11
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	4e-08
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-11
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-08
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	3e-11
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	9e-07
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-11
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-07
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	4e-11
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	5e-08
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-11
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-08
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	4e-11
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	9e-08
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-11
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-08
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	4e-11
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-07
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-11
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	9e-08
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-11
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-08
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	5e-11
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	4e-07
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	7e-04
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-11
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	9e-08
2epa_A	72	Krueppel-like factor 10; transforming growth facto	5e-11
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-11
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-07
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-11
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-08
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	5e-11
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	2e-08
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	5e-11
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	3e-05
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-11
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-08
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	6e-11
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	1e-07
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-11
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-07
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-11
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-08
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-11
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	7e-08
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	7e-11
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-07
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	7e-11
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	1e-06
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	7e-11
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	5e-08
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-11
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-08
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	7e-11
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	7e-09
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-11
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-08
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-11
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-08
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	9e-11
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	6e-08
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	9e-11
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-07
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	9e-11
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	4e-08
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	9e-11
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	4e-08
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	1e-07
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-10
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-08
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-10
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-08
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-10
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-07
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-10
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-08
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	1e-10
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	7e-06
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-10
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-07
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-10
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-08
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-10
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-09
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-10
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-08
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-10
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-08
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-10
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-07
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	2e-10
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	3e-07
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-10
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-08
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	2e-10
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	7e-08
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-10
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-08
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	2e-10
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	1e-06
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-10
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-08
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-10
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-08
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-10
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	7e-08
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-10
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-08
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-10
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-08
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-10
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-08
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-10
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-08
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-10
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-08
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-10
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-07
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-10
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	8e-08
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-10
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-07
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	4e-10
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-06
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	4e-10
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-10
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-08
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-10
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-07
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-10
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-08
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-10
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-08
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-10
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-08
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	5e-10
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-08
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-10
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-08
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-10
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-08
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	6e-10
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	3e-08
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	6e-10
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	6e-08
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-10
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-08
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	8e-10
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-07
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	9e-10
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-08
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	1e-09
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	8e-09
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-09
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	8e-09
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-09
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-07
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	2e-08
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	7e-08
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	2e-06
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	7e-08
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	3e-06
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	1e-07
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	2e-07
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	2e-07
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	2e-06
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	3e-06
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	7e-06
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	3e-04
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	3e-04
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-05
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	3e-04
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	3e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	4e-05
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	4e-05
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	3e-04
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	9e-05

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 93.1 bits (232), Expect = 2e-25
 Identities = 40/119 (33%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRG--ECDRVFTTRNMLNIHIKRD 69
              + C + FS  + L  HV  +H    E+    C         + F  +  L  HI R 
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI-RV 84

Query: 70  HQKEKPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYACEF--CPLTFRHSSHLFRHRR 124
           H  EKP+ C    C K F    + KIH R HTGEKP+ CEF  C   F +SS   +H  
Sbjct: 85  HTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMH 143

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 72.7 bits (179), Expect = 2e-17
 Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 16/118 (13%)

Query: 19  KIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQ- 77
              S    +K  +  K     +      +    CDR F+T + L  H+        P Q 
Sbjct: 2   SSGSSGQPIKQELSCKWIDEAQLS-RPKK---SCDRTFSTMHELVTHV-TMEHVGGPEQN 56

Query: 78  --------CSQCSKSFFSKYDHKIHSRVHTGEKPYACEF--CPLTFRHSSHLFRHRRS 125
                   C +  KSF +KY    H RVHTGEKP+ C F  C   F  S +L  H+R+
Sbjct: 57  NHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT 114

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 69.2 bits (170), Expect = 3e-16
 Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 8/95 (8%)

Query: 14  CQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKE 73
           C    K F  +  L  H+R   G   E+P F C     C ++F     L IH KR H  E
Sbjct: 65  CPREGKSFKAKYKLVNHIRVHTG---EKP-FPCP-FPGCGKIFARSENLKIH-KRTHTGE 118

Query: 74  KPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYAC 106
           KP++C    C + F +  D K H  VHT +K    
Sbjct: 119 KPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 60.0 bits (146), Expect = 1e-12
 Identities = 10/84 (11%), Positives = 20/84 (23%), Gaps = 10/84 (11%)

Query: 50  GECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
           G                K   + +       C ++F + ++   H  +     P      
Sbjct: 1   GSSGSSGQPIKQELSC-KWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59

Query: 110 PL---------TFRHSSHLFRHRR 124
                      +F+    L  H R
Sbjct: 60  CYWEECPREGKSFKAKYKLVNHIR 83

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 45.0 bits (107), Expect = 5e-07
 Identities = 7/47 (14%), Positives = 10/47 (21%)

Query: 81  CSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLH 127
              S            +   +     + C  TF     L  H    H
Sbjct: 3   SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 12  FTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD 69
           F C    C KIF+    LK H R   G   E+P FKCE    CDR F   +    H    
Sbjct: 91  FPCPFPGCGKIFARSENLKIHKRTHTG---EKP-FKCEFE-GCDRRFANSSDRKKH-MHV 144

Query: 70  HQKEKPYQCS 79
           H  +K    S
Sbjct: 145 HTSDKSGPSS 154

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 90.3 bits (225), Expect = 2e-24
 Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 8/122 (6%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCE--GRGECDRVFTTRNMLNIHIKRD 69
                CS+ F  +  L  H+ ++H   E +  F C   G     R F  + ML +H+ R 
Sbjct: 4   CRWDGCSQEFDSQEQLVHHINSEHIHGERKE-FVCHWGGCSRELRPFKAQYMLVVHM-RR 61

Query: 70  HQKEKPYQC--SQCSKSFFSKYDHKIHSRVHTGEKPYACEF--CPLTFRHSSHLFRHRRS 125
           H  EKP++C    C KS+    + K H R HTGEKPY CE   C   F ++S   +H+  
Sbjct: 62  HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR 121

Query: 126 LH 127
            H
Sbjct: 122 TH 123

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 77.2 bits (191), Expect = 3e-19
 Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 11/116 (9%)

Query: 14  CQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKE 73
           C    + F  +  L  H+R   G   E+P  KC     C + ++    L  H  R H  E
Sbjct: 42  CSRELRPFKAQYMLVVHMRRHTG---EKP-HKCT-FEGCRKSYSRLENLKTH-LRSHTGE 95

Query: 74  KPYQCSQ--CSKSFFSKYDHKIH-SRVHTGEKPYACEF--CPLTFRHSSHLFRHRR 124
           KPY C    CSK+F +  D   H +R H+ EKPY C+   C   +   S L +H +
Sbjct: 96  KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 71.9 bits (177), Expect = 3e-17
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 13/95 (13%)

Query: 40  ERPRFKCEGRGECDRVFTTRNMLNIHI--KRDHQKEKPYQCSQC-----SKSFFSKYDHK 92
           E    + +    C + F ++  L  HI  +  H + K + C         + F ++Y   
Sbjct: 1   ETD-CRWD---GCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLV 56

Query: 93  IHSRVHTGEKPYACEF--CPLTFRHSSHLFRHRRS 125
           +H R HTGEKP+ C F  C  ++    +L  H RS
Sbjct: 57  VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS 91

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 56.4 bits (137), Expect = 3e-11
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 9/93 (9%)

Query: 12  FTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD 69
             C    C K +S    LK H+R+  G   E+P + CE  G C + F+  +    H  R 
Sbjct: 68  HKCTFEGCRKSYSRLENLKTHLRSHTG---EKP-YMCEHEG-CSKAFSNASDRAKHQNRT 122

Query: 70  HQKEKPYQC--SQCSKSFFSKYDHKIHSRVHTG 100
           H  EKPY C    C+K +      + H +   G
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 88.0 bits (219), Expect = 6e-24
 Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 10/117 (8%)

Query: 12  FTC--QVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD 69
           F C    C+K +   + L+ H R   G   E+P ++C+ + +C+R F+  + L  H +R 
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKHTG---EKP-YQCDFK-DCERRFSRSDQLKRH-QRR 60

Query: 70  HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF--CPLTFRHSSHLFRHRR 124
           H   KP+QC  C + F      K H+R HTGEKP++C +  C   F  S  L RH  
Sbjct: 61  HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 61.4 bits (150), Expect = 2e-13
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 73  EKPYQCSQ--CSKSFFSKYDHKIHSRVHTGEKPYACEF--CPLTFRHSSHLFRHRR 124
           ++P+ C+   C+K +F     ++HSR HTGEKPY C+F  C   F  S  L RH+R
Sbjct: 4   KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR 59

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 83.7 bits (208), Expect = 4e-22
 Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 9/118 (7%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD-- 69
             C  C K F  +  LK H R   G   E+P F+C    +C + +  +  L  H  R+  
Sbjct: 8   VECPTCHKKFLSKYYLKVHNRKHTG---EKP-FECP---KCGKCYFRKENLLEHEARNCM 60

Query: 70  HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLH 127
           ++ E+ + CS C ++F  + + ++H   HTGE PY C  C   F     L  H   LH
Sbjct: 61  NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 68.7 bits (169), Expect = 2e-16
 Identities = 20/56 (35%), Positives = 26/56 (46%)

Query: 70  HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRS 125
                  +C  C K F SKY  K+H+R HTGEKP+ C  C   +    +L  H   
Sbjct: 2   SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEAR 57

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 64.4 bits (158), Expect = 1e-14
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 6/92 (6%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
           F C  C K +  +  L  H      +  E+  F C     C   F  R  L +H    H 
Sbjct: 36  FECPKCGKCYFRKENLLEHEARNCMNRSEQV-FTCS---VCQETFRRRMELRLH-MVSHT 90

Query: 72  KEKPYQCSQCSKSFFSKYDHKIH-SRVHTGEK 102
            E PY+CS CS+ F  K D + H  ++H+G  
Sbjct: 91  GEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 82.5 bits (205), Expect = 5e-22
 Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 40  ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
           ERP + C     CDR F+    L  H  R H  +KP+QC  C ++F        H R HT
Sbjct: 2   ERP-YACPVE-SCDRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58

Query: 100 GEKPYACEFCPLTFRHSSHLFRHRR 124
           GEKP+AC+ C   F  S    RH +
Sbjct: 59  GEKPFACDICGRKFARSDERKRHTK 83

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 63.3 bits (155), Expect = 1e-14
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 10/93 (10%)

Query: 12  FTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD 69
           + C V  C + FS    L  H+R   G   ++P F+C     C R F+  + L  H  R 
Sbjct: 5   YACPVESCDRRFSQSGSLTRHIRIHTG---QKP-FQCR---ICMRNFSRSDHLTTH-IRT 56

Query: 70  HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
           H  EKP+ C  C + F    + K H+++H  +K
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 82.5 bits (205), Expect = 6e-22
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 40  ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
             P  KCE    C + F+ ++ L  H  R H   KPY+C  C  +         H R+H+
Sbjct: 6   SGP-HKCE---VCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS 60

Query: 100 GEKPYACEFCPLTFRHSSHLFRHRR 124
            E+P+ C+ CP   R+SS L  H R
Sbjct: 61  DERPFKCQICPYASRNSSQLTVHLR 85

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 72.8 bits (180), Expect = 3e-18
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 8/95 (8%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
             C+VC K FS ++ LK H+R   G    +P +KC+    CD      + LN H  R H 
Sbjct: 9   HKCEVCGKCFSRKDKLKTHMRCHTG---VKP-YKCK---TCDYAAADSSSLNKH-LRIHS 60

Query: 72  KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
            E+P++C  C  +  +     +H R HTG+   + 
Sbjct: 61  DERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 70.1 bits (173), Expect = 4e-17
 Identities = 22/55 (40%), Positives = 26/55 (47%)

Query: 70  HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                P++C  C K F  K   K H R HTG KPY C+ C      SS L +H R
Sbjct: 3   SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR 57

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 84.8 bits (211), Expect = 8e-22
 Identities = 46/113 (40%), Positives = 62/113 (54%), Gaps = 8/113 (7%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
           + C  C K FS  + L  H R   G   E+P +KC    EC + F+ +  L  H +R H 
Sbjct: 22  YACPECGKSFSRSDHLAEHQRTHTG---EKP-YKCP---ECGKSFSDKKDLTRH-QRTHT 73

Query: 72  KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
            EKPY+C +C KSF  + + + H R HTGEKPYAC  C  +F   +HL  H+R
Sbjct: 74  GEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR 126

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 84.0 bits (209), Expect = 2e-21
 Identities = 44/113 (38%), Positives = 57/113 (50%), Gaps = 8/113 (7%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
           + C  C K FS    L+AH R   G   E+P + C    EC + F+    L  H +R H 
Sbjct: 78  YKCPECGKSFSQRANLRAHQRTHTG---EKP-YACP---ECGKSFSQLAHLRAH-QRTHT 129

Query: 72  KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
            EKPY+C +C KSF  + +   H R HTGEKPY C  C  +F     L  H+R
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 77.5 bits (192), Expect = 5e-19
 Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 5/85 (5%)

Query: 40  ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
           E+P + C    EC + F+  + L  H +R H  EKPY+C +C KSF  K D   H R HT
Sbjct: 19  EKP-YACP---ECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHT 73

Query: 100 GEKPYACEFCPLTFRHSSHLFRHRR 124
           GEKPY C  C  +F   ++L  H+R
Sbjct: 74  GEKPYKCPECGKSFSQRANLRAHQR 98

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 71.7 bits (177), Expect = 7e-17
 Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 56  FTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRH 115
               +            EKPY C +C KSF        H R HTGEKPY C  C  +F  
Sbjct: 3   EFGSSSSVAQ-AALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61

Query: 116 SSHLFRHRR 124
              L RH+R
Sbjct: 62  KKDLTRHQR 70

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 62.8 bits (154), Expect = 2e-13
 Identities = 36/92 (39%), Positives = 50/92 (54%), Gaps = 8/92 (8%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
           + C  C K FS    L+AH R   G   E+P +KC    EC + F+  + L+ H +R H 
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTG---EKP-YKCP---ECGKSFSREDNLHTH-QRTHT 157

Query: 72  KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
            EKPY+C +C KSF  +    +H R HTG+K 
Sbjct: 158 GEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 49.7 bits (120), Expect = 1e-08
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 84  SFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
           S F        + +  GEKPYAC  C  +F  S HL  H+R
Sbjct: 2   SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQR 42

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 81.0 bits (201), Expect = 4e-21
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 15/119 (12%)

Query: 12  FTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD 69
             C    C+K+F   + ++ H+   HG    R    C    EC + F   + L  H +  
Sbjct: 6   IACPHKGCTKMFRDNSAMRKHLHT-HG---PRV-HVCA---ECGKAFVESSKLKRH-QLV 56

Query: 70  HQKEKPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYACEF--CPLTFRHSSHLFRHRR 124
           H  EKP+QC+   C K F   ++ + H R+HTG++PY C F  C   F  S++L  H  
Sbjct: 57  HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 64.8 bits (159), Expect = 9e-15
 Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
             C  C K F   + LK H     G   E+P F+C     C + F+    L  H  R H 
Sbjct: 35  HVCAECGKAFVESSKLKRHQLVHTG---EKP-FQCTFE-GCGKRFSLDFNLRTH-VRIHT 88

Query: 72  KEKPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPY 104
            ++PY C    C+K F    + K H   H   K  
Sbjct: 89  GDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 55.2 bits (134), Expect = 5e-11
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 72  KEKPYQCSQ--CSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
           + +   C    C+K F      + H   H G + + C  C   F  SS L RH+ 
Sbjct: 2   EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQL 55

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 77.5 bits (192), Expect = 6e-20
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 40  ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
           ++  F C+    C R FT    L IH +R H  E+PY C  C K+F  +   + H  +H+
Sbjct: 15  KKE-FICK---FCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS 69

Query: 100 GEKPYACEFCPLTFRHSSHLFRHRR 124
            EKP+ C+ C   F  S  L  H+ 
Sbjct: 70  KEKPFKCQECGKGFCQSRTLAVHKT 94

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 72.1 bits (178), Expect = 8e-18
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 62  LNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFR 121
            +   +   + +K + C  C + F   Y+  IH R HT E+PY C+ C   FR   HL  
Sbjct: 5   SSGG-RLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63

Query: 122 HRR 124
           HR 
Sbjct: 64  HRY 66

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 67.8 bits (167), Expect = 3e-16
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 8/95 (8%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
           F C+ C + F+    L  H R       ERP + C+    C + F  ++ L  H +  H 
Sbjct: 18  FICKFCGRHFTKSYNLLIHERTHTD---ERP-YTCD---ICHKAFRRQDHLRDH-RYIHS 69

Query: 72  KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
           KEKP++C +C K F       +H  +H        
Sbjct: 70  KEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 37.0 bits (87), Expect = 3e-04
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
           +TC +C K F  ++ L+ H         E+P FKC+   EC + F     L +H K  H 
Sbjct: 46  YTCDICHKAFRRQDHLRDHRYIHSK---EKP-FKCQ---ECGKGFCQSRTLAVH-KTLHM 97

Query: 72  KEKPYQCS 79
           +      +
Sbjct: 98  QTSSPTAA 105

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 78.8 bits (195), Expect = 1e-19
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 6/114 (5%)

Query: 17  CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPY 76
           C   F+ +  +K H    H    +   + C     C + F   N L +H +  H ++ PY
Sbjct: 80  CDLRFTTKANMKKHFNRFHN--IKICVYVCHFE-NCGKAFKKHNQLKVH-QFSHTQQLPY 135

Query: 77  QCSQ--CSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQ 128
           +C    C K F      K H +VH G      + C    +  +   +H    HQ
Sbjct: 136 ECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 73.0 bits (180), Expect = 2e-17
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 40  ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ--CSKSFFSKYDHKIHSRV 97
            +  + C    +C   +     L  H    H  EKP+ C +  C K F S +    HS  
Sbjct: 10  YKR-YICS-FADCGAAYNKNWKLQAH-LCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT 66

Query: 98  HTGEKPYACE--FCPLTFRHSSHLFRHRR 124
           HTGEK + C+   C L F   +++ +H  
Sbjct: 67  HTGEKNFTCDSDGCDLRFTTKANMKKHFN 95

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 69.5 bits (171), Expect = 4e-16
 Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 12/116 (10%)

Query: 15  QVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDH--QK 72
           + C K F+  + L  H     G   E+  F C+    CD  FTT+  +  H        K
Sbjct: 48  EGCEKGFTSLHHLTRHSLTHTG---EKN-FTCD-SDGCDLRFTTKANMKKH-FNRFHNIK 101

Query: 73  EKPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYAC--EFCPLTFRHSSHLFRHRR 124
              Y C    C K+F      K+H   HT + PY C  E C   F   S L RH +
Sbjct: 102 ICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 157

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 69.2 bits (170), Expect = 8e-16
 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 12/114 (10%)

Query: 17  CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPY 76
           C   ++    L+AH+    G   E+P F C+    C++ FT+ + L  H    H  EK +
Sbjct: 20  CGAAYNKNWKLQAHLCKHTG---EKP-FPCK-EEGCEKGFTSLHHLTRH-SLTHTGEKNF 73

Query: 77  QCSQ--CSKSFFSKYDHKIHSRVHTGEK--PYACEF--CPLTFRHSSHLFRHRR 124
            C    C   F +K + K H       K   Y C F  C   F+  + L  H+ 
Sbjct: 74  TCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF 127

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 60.7 bits (148), Expect = 1e-12
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 67  KRDHQKEKPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYACE--FCPLTFRHSSHLFRH 122
           K      K Y CS   C  ++   +  + H   HTGEKP+ C+   C   F    HL RH
Sbjct: 4   KALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH 63

Query: 123 RR 124
             
Sbjct: 64  SL 65

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 7/33 (21%), Positives = 10/33 (30%), Gaps = 2/33 (6%)

Query: 94  HSRVHTGEKPYACEF--CPLTFRHSSHLFRHRR 124
              +    K Y C F  C   +  +  L  H  
Sbjct: 3   EKALPVVYKRYICSFADCGAAYNKNWKLQAHLC 35

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 74.8 bits (185), Expect = 3e-19
 Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 44  FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
           F C+    C + F   + L+ H    H   +PY C  C K F  K D K H+ +HTGEKP
Sbjct: 2   FDCK---ICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP 57

Query: 104 YACEFCPLTFRHSSHLFRHRR 124
           + C+ C   F  SS+L  H R
Sbjct: 58  HKCQVCGKAFSQSSNLITHSR 78

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 74.8 bits (185), Expect = 9e-19
 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 11/108 (10%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
           + CQ C K F++++    H+    G    RP + C   G C + F  ++ L  H  + H 
Sbjct: 11  YPCQ-CGKSFTHKSQRDRHMSMHLG---LRP-YGC---GVCGKKFKMKHHLVGH-MKIHT 61

Query: 72  KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHL 119
             KPY+C+ C+K F  +     H  V +  K Y           +S  
Sbjct: 62  GIKPYECNICAKRFMWRDS--FHRHVTSCTKSYEAAKAEQNTTEASGP 107

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 73.2 bits (181), Expect = 3e-18
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 40  ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
           ++  + C+    C + FT ++  + H    H   +PY C  C K F  K+    H ++HT
Sbjct: 8   DKL-YPCQ----CGKSFTHKSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61

Query: 100 GEKPYACEFCPLTFRHSSHLFRHRR 124
           G KPY C  C   F        HR 
Sbjct: 62  GIKPYECNICAKRFMWRDSF--HRH 84

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 64.4 bits (158), Expect = 1e-14
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                +K Y C QC KSF  K     H  +H G +PY C  C   F+   HL  H +
Sbjct: 3   SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 43.6 bits (104), Expect = 8e-07
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 95  SRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
           S   +G+K Y C+ C  +F H S   RH  
Sbjct: 2   SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMS 30

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 74.1 bits (183), Expect = 9e-19
 Identities = 31/90 (34%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 40  ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
                 CE    C ++F     LN H K  H  EKPY C  C   F  K     H R H 
Sbjct: 5   SSG-VACE---ICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 59

Query: 100 GE--KPYACEFCPLTFRHSSHLFRHRRSLH 127
           G   KPY C+ C   F    HL  H + +H
Sbjct: 60  GSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 68.3 bits (168), Expect = 2e-16
 Identities = 18/55 (32%), Positives = 22/55 (40%)

Query: 70  HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                   C  C K F   Y    H   H+GEKPY+C  C L F+    +  H R
Sbjct: 2   SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR 56

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 72.2 bits (178), Expect = 4e-18
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 40  ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ--CSKSFFSKYDHKIHSRV 97
                 C+    C R+F+ R  LN H K  H  +K + C +  C KSF  K   K H ++
Sbjct: 5   SSG-MPCDFP-GCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62

Query: 98  HTGEKPYACEFC 109
           H+  + Y CEF 
Sbjct: 63  HSDTRDYICEFS 74

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 56.4 bits (137), Expect = 5e-12
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 70  HQKEKPYQCS--QCSKSFFSKYDHKIHSRV-HTGEKPYACEF--CPLTFRHSSHLFRHRR 124
                   C    C + F ++     H +  H  +K ++C    C  +F    HL  H +
Sbjct: 2   SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 52.2 bits (126), Expect = 2e-10
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 7/76 (9%)

Query: 12 FTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD 69
            C    C +IFS    L  H + +H    ++  F C     C + F  +  L  H  + 
Sbjct: 8  MPCDFPGCGRIFSNRQYLNHHKKYQH--IHQKS-FSCPEPA-CGKSFNFKKHLKEH-MKL 62

Query: 70 HQKEKPYQCSQCSKSF 85
          H   + Y C     S 
Sbjct: 63 HSDTRDYICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 39.1 bits (92), Expect = 2e-05
 Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%)

Query: 98  HTGEKPYACEF--CPLTFRHSSHLFRHRRSLH 127
            +G     C+F  C   F +  +L  H++  H
Sbjct: 2   SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 71.4 bits (176), Expect = 7e-18
 Identities = 19/68 (27%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 62  LNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGE--KPYACEFCPLTFRHSSHL 119
                 R H  EKPY+C  C   F      K+H      E    + C  C       S L
Sbjct: 3   SGSS-GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61

Query: 120 FRHRRSLH 127
             H R  H
Sbjct: 62  GVHLRKQH 69

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 60.2 bits (147), Expect = 1e-13
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 9/81 (11%)

Query: 27  LKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDH-QKEKPYQCSQCSKSF 85
             +  R   G   E+P ++C     C   FT    + +HI + H +    + C  C    
Sbjct: 3   SGSSGRTHSG---EKP-YECY---ICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVI 55

Query: 86  FSKYDHKIHSR-VHTGEKPYA 105
             K D  +H R  H+   P +
Sbjct: 56  ARKSDLGVHLRKQHSYSGPSS 76

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 53.7 bits (130), Expect = 6e-11
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
          + C +C   F+    +K H+  KH   E   +F C     CD V   ++ L +H+++ H 
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHT--ENVAKFHCP---HCDTVIARKSDLGVHLRKQHS 70

Query: 72 KEKPY 76
             P 
Sbjct: 71 YSGPS 75

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 70.2 bits (173), Expect = 2e-17
 Identities = 18/57 (31%), Positives = 30/57 (52%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                  P +CS+CS S  SK   +IH R+H  ++P+ C +C    +  S+L +H +
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 58.3 bits (142), Expect = 7e-13
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 40  ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
             P  KC    EC    +++  L IH +R H  ++P++C+ CS       +   H +   
Sbjct: 7   GHP-EKC---SECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61

Query: 100 GEKPYAC 106
           G+     
Sbjct: 62  GDMSGPS 68

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 70.2 bits (173), Expect = 2e-17
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 62  LNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFR 121
            + H       +KPY+C +C  SF  K +   H  VHTGEKPY C  C   F   ++L  
Sbjct: 5   HHHH-SHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63

Query: 122 HRR 124
           H R
Sbjct: 64  HTR 66

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 59.4 bits (145), Expect = 3e-13
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 40  ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
           ++P +KC+    C   F  +  L  H K  H  EKPY+C+ C   F    + K H+R+H+
Sbjct: 15  DKP-YKCD---RCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69

Query: 100 GEKPY 104
           GEKPY
Sbjct: 70  GEKPY 74

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 69.4 bits (171), Expect = 5e-17
 Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 5/81 (6%)

Query: 44  FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
           F+C     C R F+  + L  H  R H  EKP+ C  C + F    + K H  +     P
Sbjct: 4   FQCR---ICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILP 58

Query: 104 YACEFCPLTFRHSSHLFRHRR 124
              +        + HL     
Sbjct: 59  ILEDKVEELLSKNYHLENEVA 79

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 66.0 bits (162), Expect = 1e-15
 Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 74  KPYQCSQCSKSFFSKYDH-KIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
           KP+QC  C ++F S+ DH   H R HTGEKP+AC+ C   F  S    RHR 
Sbjct: 2   KPFQCRICMRNF-SRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD 52

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 61.7 bits (151), Expect = 5e-14
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 12/94 (12%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
           F C++C + FS  + L  H+R   G   E+P F C+    C R F   +    H +    
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTHTG---EKP-FACD---ICGRKFARSDERKRH-RDIQ- 54

Query: 72  KEKPYQCSQCSKSFFSKYD---HKIHSRVHTGEK 102
              P    +  +     Y         +   GE+
Sbjct: 55  HILPILEDKVEELLSKNYHLENEVARLKKLVGER 88

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 68.2 bits (168), Expect = 1e-16
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 62  LNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFR 121
                +   ++ + Y+C +C KSF    D   H R HTGEKPY C+ C   F   SHL  
Sbjct: 6   SGRS-EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64

Query: 122 HRR 124
           H R
Sbjct: 65  HHR 67

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 55.9 bits (136), Expect = 7e-12
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 40  ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
            R  +KC+   EC + F+  + L+ H +R H  EKPY+C +C K+F  +     H RVHT
Sbjct: 16  RRR-YKCD---ECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70

Query: 100 GEKPY 104
           G  P 
Sbjct: 71  GSGPS 75

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 67.5 bits (166), Expect = 2e-16
 Identities = 26/58 (44%), Positives = 30/58 (51%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
              H  EKPY C +C K+F        H RVHTGEKPY C  C   F  +S L  H+R
Sbjct: 6   SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 56.3 bits (137), Expect = 5e-12
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 40  ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
           E+P + C    EC + F+  ++L  H +R H  EKPY+C +C K+F        H R+HT
Sbjct: 12  EKP-YGCV---ECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66

Query: 100 GEKPYA 105
                 
Sbjct: 67  SGPSSG 72

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 47.1 bits (113), Expect = 2e-08
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
            S +H+GEKPY C  C   F  SS L +H+R
Sbjct: 5   SSGIHSGEKPYGCVECGKAFSRSSILVQHQR 35

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 66.1 bits (162), Expect = 9e-16
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 44  FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ--CSKSFFSKYDHKIHSRVHTGE 101
           + C     C + F   N L +H +  H ++ PY+C    C K F      K H +VH G 
Sbjct: 2   YVCHFEN-CGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 59

Query: 102 KPYACEFCPLTFRHSSHLFRHRRSLH 127
                + C    +  +   +H    H
Sbjct: 60  PCKKDDSCSFVGKTWTLYLKHVAECH 85

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 66.5 bits (163), Expect = 1e-15
 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 32  RNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS--QCSKSFFSKY 89
            +     + R    C+  G C +V+T  + L  H  R H  EKPY+C+   C   F    
Sbjct: 5   SSGPDLEKRRI-HYCDYPG-CTKVYTKSSHLKAH-LRTHTGEKPYKCTWEGCDWRFARSD 61

Query: 90  DHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
           +   H R HTG KP+ C  C  +F  S HL  H +
Sbjct: 62  ELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 64.9 bits (159), Expect = 3e-15
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 62  LNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGE----KPYACEFCPLTFRHSS 117
                 R H  EKPY CS C K+F  K    +H + +         + C  C  TF   +
Sbjct: 3   SGSS-GRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61

Query: 118 HLFRHRR 124
            + RH  
Sbjct: 62  TMARHAD 68

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 60.6 bits (148), Expect = 1e-13
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 40  ERPRFKCEGRGECDRVFTTRNMLNIHIKR---DHQKEKPYQCSQCSKSFFSKYDHKIHSR 96
           E+P + C     CD+ F  + +L++H KR    +     + CS+C K+F  +     H+ 
Sbjct: 13  EKP-YACS---HCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68

Query: 97  VHTGEKPYACEFCPLTF 113
              G      E    + 
Sbjct: 69  NCAGPDGVEGENSGPSS 85

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 63.7 bits (156), Expect = 5e-15
 Identities = 19/54 (35%), Positives = 27/54 (50%)

Query: 74  KPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLH 127
           + + C  C+++F  +   K H R HT EKPY C  C   F     L RH + +H
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 47.1 bits (113), Expect = 2e-08
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 44  FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHS-RVHTGEK 102
           F CE    C R F  +  L  H  R H  EKPY C  C+++F  +     H+ ++H+G  
Sbjct: 3   FVCE---VCTRAFARQEHLKRH-YRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 64.5 bits (158), Expect = 5e-15
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 51  ECDRVFTTRNMLNIHIKRDHQKEKPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYACEF 108
            C + +T  + L  H  R H  EKPY C    C   F    +   H R HTG +P+ C+ 
Sbjct: 12  GCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 70

Query: 109 CPLTFRHSSHLFRHRR 124
           C   F  S HL  H +
Sbjct: 71  CDRAFSRSDHLALHMK 86

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 60.2 bits (147), Expect = 2e-13
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 70  HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC--EFCPLTFRHSSHLFRHRRS 125
                    + C K++      K H R HTGEKPY C  + C   F  S  L RH R 
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 64.0 bits (156), Expect = 6e-15
 Identities = 15/58 (25%), Positives = 18/58 (31%), Gaps = 3/58 (5%)

Query: 73  EKPYQCSQCSKSFFSKYDHKIHSRVHT---GEKPYACEFCPLTFRHSSHLFRHRRSLH 127
               QC  C  +   K     H R H        + CEFC   F     +  HR   H
Sbjct: 5   SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 53.9 bits (130), Expect = 6e-11
 Identities = 15/77 (19%), Positives = 22/77 (28%), Gaps = 6/77 (7%)

Query: 36  GSSEERPRFKCEGRGECDRVFTTRNMLNIHIKR--DHQKEKPYQCSQCSKSFFSKYDHKI 93
           GSS      +CE    C      +  LN H ++  +      + C  C K F        
Sbjct: 1   GSSGSSG-LQCE---ICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAA 56

Query: 94  HSRVHTGEKPYACEFCP 110
           H          A +   
Sbjct: 57  HRSKSHPALLLAPQESS 73

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 48.9 bits (117), Expect = 5e-09
 Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 4/74 (5%)

Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
            C++C      +  L  H R KH  +    RF CE    C + F   + +  H  + H 
Sbjct: 8  LQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCE---FCGKRFEKPDSVAAHRSKSHP 63

Query: 72 KEKPYQCSQCSKSF 85
                      S 
Sbjct: 64 ALLLAPQESSGPSS 77

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 38.9 bits (91), Expect = 2e-05
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 98  HTGEKPYACEFCPLTFRHSSHLFRHRR 124
            +G     CE C  T R  + L  H+R
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQR 28

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 63.0 bits (154), Expect = 1e-14
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 66  IKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRV--HTGEKPYACEFCPLTFRHSSHLFRHR 123
           ++   + E  Y+C  CS+ +    +   H         K Y C FC   F    ++  H 
Sbjct: 1   MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60

Query: 124 RSLHQM 129
           + +H++
Sbjct: 61  KIIHKI 66

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 37.9 bits (89), Expect = 5e-05
 Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 34/89 (38%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
           + C+VCS+++++ +    H    H                                   +
Sbjct: 11  YRCKVCSRVYTHISNFCRHYVTSH----------------------------------KR 36

Query: 72  KEKPYQCSQCSKSFFSKYDHKIHSRVHTG 100
             K Y C  C K F  K +   H ++   
Sbjct: 37  NVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 55.6 bits (135), Expect = 4e-12
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 EKP+ CS C K+F SK    +H + H  EKP   
Sbjct: 2   SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 40.6 bits (96), Expect = 3e-06
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 95  SRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
           S   +GEKP+ C  C   F   S+L  H++
Sbjct: 2   SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQ 31

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 55.2 bits (134), Expect = 7e-12
 Identities = 16/40 (40%), Positives = 20/40 (50%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 EKPY+CS C K+F  K    IH + HTGE+    
Sbjct: 4   GSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 3e-07
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY C  C   F   S L  H++
Sbjct: 3   SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQ 33

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 54.9 bits (133), Expect = 9e-12
 Identities = 17/39 (43%), Positives = 20/39 (51%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                  PY+CSQC KSF  K    +H R+HT EKP   
Sbjct: 5   SSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 41.8 bits (99), Expect = 1e-06
 Identities = 9/31 (29%), Positives = 11/31 (35%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                 G  PY C  C  +F     L  H+R
Sbjct: 3   SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQR 33

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 54.8 bits (133), Expect = 9e-12
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                  KPY C++C K+F SK    IH+R HTGE   + 
Sbjct: 4   GSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 45.2 bits (108), Expect = 6e-08
 Identities = 13/31 (41%), Positives = 14/31 (45%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TG KPY C  C   FR  S+L  H R
Sbjct: 3   SGSSGTGMKPYVCNECGKAFRSKSYLIIHTR 33

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 54.9 bits (133), Expect = 1e-11
 Identities = 19/41 (46%), Positives = 22/41 (53%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKPY CS+C K+F SK    IH R H+GEKP    
Sbjct: 4   GSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 8e-08
 Identities = 12/31 (38%), Positives = 13/31 (41%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                 GEKPY C  C   F   S+L  H R
Sbjct: 3   SGSSGAGEKPYGCSECGKAFSSKSYLIIHMR 33

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 54.9 bits (133), Expect = 1e-11
 Identities = 18/39 (46%), Positives = 21/39 (53%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                EKPY+CS C KSF  K    +H R+HTGE P   
Sbjct: 5   SSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.1 bits (105), Expect = 1e-07
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY C  C  +F   S L  H+R
Sbjct: 3   SGSSGTGEKPYECSDCGKSFIKKSQLHVHQR 33

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 54.9 bits (133), Expect = 1e-11
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKPY+C +C K F  + D   H  VHTGEKP    
Sbjct: 4   GSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 45.6 bits (109), Expect = 3e-08
 Identities = 12/31 (38%), Positives = 13/31 (41%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY CE C   F     L+ H  
Sbjct: 3   SGSSGTGEKPYKCEECGKGFICRRDLYTHHM 33

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 54.5 bits (132), Expect = 1e-11
 Identities = 17/40 (42%), Positives = 21/40 (52%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 EKPY+CS C KSF  K   +IH + HTGE+    
Sbjct: 4   GSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.4 bits (106), Expect = 1e-07
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY C  C  +F   S L  H++
Sbjct: 3   SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQK 33

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 54.5 bits (132), Expect = 1e-11
 Identities = 18/40 (45%), Positives = 22/40 (55%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 EKPY+CS C KSF  K    +H ++HTGEKP   
Sbjct: 4   GSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.5 bits (106), Expect = 1e-07
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 93  IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                 TGEKPY C  C  +F   S L  H++
Sbjct: 2   SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQ 33

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 54.1 bits (131), Expect = 2e-11
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 EKPY+C +C K + SK++  +H +VHTGE+P   
Sbjct: 4   GSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.8 bits (112), Expect = 2e-08
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 93  IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                 TGEKPY CE C   +    +L  H++
Sbjct: 2   SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQK 33

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 54.1 bits (131), Expect = 2e-11
 Identities = 16/39 (41%), Positives = 20/39 (51%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                EKPY+C +C K +  + D   H RVHTGEK    
Sbjct: 5   SSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.4 bits (106), Expect = 1e-07
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                +GEKPY C  C   ++    L  H+R
Sbjct: 3   SGSSGSGEKPYKCVECGKGYKRRLDLDFHQR 33

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 54.1 bits (131), Expect = 2e-11
 Identities = 17/39 (43%), Positives = 20/39 (51%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 KPY CSQC+K+F  K    +H R HTG KP   
Sbjct: 5   SSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 44.8 bits (107), Expect = 9e-08
 Identities = 13/31 (41%), Positives = 14/31 (45%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TG KPY C  C  TF   S L  H+R
Sbjct: 3   SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQR 33

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 54.1 bits (131), Expect = 2e-11
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                EKPY+C++C K+F  + +   H ++HTGEKP    
Sbjct: 5   SSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.4 bits (106), Expect = 1e-07
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY C  C   F   S+LF H++
Sbjct: 3   SGSSGTGEKPYRCAECGKAFTDRSNLFTHQK 33

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 54.0 bits (131), Expect = 2e-11
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 EKPY+C++C K+F +K +  +H R HTGE   + 
Sbjct: 4   GSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 45.5 bits (109), Expect = 4e-08
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 93  IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                 TGEKPY C  C   F   S+L  H+R
Sbjct: 2   SSGSSGTGEKPYECNECQKAFNTKSNLMVHQR 33

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.7 bits (130), Expect = 3e-11
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKPY C++C K+F  K     H R HTGEKP    
Sbjct: 4   GSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 2e-08
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 93  IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                 +GEKPY C  C  TF   S L  H+R
Sbjct: 2   SSGSSGSGEKPYGCNECGKTFSQKSILSAHQR 33

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.3 bits (129), Expect = 3e-11
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 EKP +C++C K+F  K    +H R H  +K    
Sbjct: 4   GSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.2 bits (100), Expect = 9e-07
 Identities = 12/31 (38%), Positives = 13/31 (41%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKP  C  C   F   S L  H+R
Sbjct: 3   SGSSGTGEKPCKCTECGKAFCWKSQLIMHQR 33

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.3 bits (129), Expect = 4e-11
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 E+ Y+CS+C K+F  K    +H R+H GEKP   
Sbjct: 4   GSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.7 bits (104), Expect = 2e-07
 Identities = 11/31 (35%), Positives = 13/31 (41%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGE+ Y C  C   F   S L  H+R
Sbjct: 3   SGSSGTGERHYECSECGKAFIQKSTLSMHQR 33

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.3 bits (129), Expect = 4e-11
 Identities = 18/40 (45%), Positives = 20/40 (50%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
               + EKPYQCS+C KSF   Y    H   HT EKP   
Sbjct: 4   GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 5e-08
 Identities = 11/31 (35%), Positives = 13/31 (41%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                 GEKPY C  C  +F  S  L +H  
Sbjct: 3   SGSSGEGEKPYQCSECGKSFSGSYRLTQHWI 33

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.3 bits (129), Expect = 4e-11
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 EKPY+C++C K+F ++    IH   H+GEKP   
Sbjct: 4   GSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 5e-08
 Identities = 13/31 (41%), Positives = 14/31 (45%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY C  C   FR  S L  H+ 
Sbjct: 3   SGSSGTGEKPYKCNECGKAFRARSSLAIHQA 33

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.3 bits (129), Expect = 4e-11
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                EKP++CS+C K+F +K +  +H R HTGEKP    
Sbjct: 5   SSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 9e-08
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKP+ C  C   F   S+L  H+R
Sbjct: 3   SGSSGTGEKPFECSECQKAFNTKSNLIVHQR 33

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.3 bits (129), Expect = 4e-11
 Identities = 17/40 (42%), Positives = 20/40 (50%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 EKPY+C  C KSF       +H R+HTGEKP   
Sbjct: 4   GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 1e-08
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY C+ C  +FR+ S L  H+R
Sbjct: 3   SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQR 33

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.3 bits (129), Expect = 4e-11
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 EKPY+C  C K +  + +  +H RVH GEK    
Sbjct: 4   GSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.4 bits (106), Expect = 1e-07
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                + EKPY CE C   +    +L  H+R
Sbjct: 3   SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQR 33

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 53.3 bits (129), Expect = 4e-11
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 E+ ++CS C K F    +   H R+HTGEKP   
Sbjct: 4   GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 44.5 bits (106), Expect = 9e-08
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                 GE+ + C  C   F  +S+  +HRR
Sbjct: 3   SGSSGHGERGHRCSDCGKFFLQASNFIQHRR 33

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 53.3 bits (129), Expect = 5e-11
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 ++PY+C +C K+F +K     H R HTGEKP   
Sbjct: 4   GSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 46.0 bits (110), Expect = 2e-08
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TG++PY C  C   F+  S L  HRR
Sbjct: 3   SGSSGTGQRPYECIECGKAFKTKSSLICHRR 33

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 53.3 bits (129), Expect = 5e-11
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 EK ++C +C   F      ++H  VH GEKP   
Sbjct: 4   GSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 42.9 bits (102), Expect = 4e-07
 Identities = 9/31 (29%), Positives = 13/31 (41%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                 GEK + C  C + F  +S L  H+ 
Sbjct: 3   SGSSGMGEKTWKCRECDMCFSQASSLRLHQN 33

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 34.4 bits (80), Expect = 7e-04
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%)

Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ 80
          E+  +KC    ECD  F+  + L +H +  H  EKP   S 
Sbjct: 10 EKT-WKCR---ECDMCFSQASSLRLH-QNVHVGEKPSGPSS 45

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.3 bits (129), Expect = 5e-11
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                E P+ CS+C K F  K +  IH ++HTGE+P   
Sbjct: 5   SSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.4 bits (106), Expect = 9e-08
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGE P+ C  C   F H ++L  H++
Sbjct: 3   SGSSGTGENPFICSECGKVFTHKTNLIIHQK 33

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 53.9 bits (130), Expect = 5e-11
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 67  KRDHQKEKPYQCSQ--CSKSFFSKYDHKIHSRVHTGEKPYACEF--CPLTFRHSSHLFRH 122
           + D  + + + CS   C K++F     K H+R HTGEKP++C +  C   F  S  L RH
Sbjct: 9   QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68

Query: 123 RRS 125
           RR+
Sbjct: 69  RRT 71

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 53.3 bits (129), Expect = 5e-11
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                E+ Y+CS+C K+F  K    +H R+HTGEKP   
Sbjct: 5   SSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.0 bits (105), Expect = 2e-07
 Identities = 11/31 (35%), Positives = 13/31 (41%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGE+ Y C  C   F   S L  H+R
Sbjct: 3   SGSSGTGERHYECSECGKAFARKSTLIMHQR 33

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.9 bits (128), Expect = 5e-11
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKP++C  C KSF  +     HS VHT EKP    
Sbjct: 4   GSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 1e-08
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKP+ C+ C  +F   S L RH  
Sbjct: 3   SGSSGTGEKPFKCDICGKSFCGRSRLNRHSM 33

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 52.9 bits (128), Expect = 5e-11
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                +KP++C+ C KSF +K +   H R+HTGEK    
Sbjct: 5   SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 46.4 bits (111), Expect = 2e-08
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 93  IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                 TG+KP+ C  C  +FR   +L  H+R
Sbjct: 2   SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQR 33

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 53.1 bits (128), Expect = 5e-11
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
                 E PY C QC KSF  +    +H R  +   P +
Sbjct: 3   SGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 38.0 bits (89), Expect = 3e-05
 Identities = 11/31 (35%), Positives = 13/31 (41%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
            S    GE PY C  C  +F     L  H+R
Sbjct: 2   SSGSSGGETPYLCGQCGKSFTQRGSLAVHQR 32

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 52.9 bits (128), Expect = 6e-11
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                EKP++C++C KSF        H R+HTGEKP    
Sbjct: 5   SSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 45.6 bits (109), Expect = 4e-08
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKP+ C  C  +F  SS L  H+R
Sbjct: 3   SGSSGTGEKPFECAECGKSFSISSQLATHQR 33

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 52.6 bits (127), Expect = 6e-11
 Identities = 17/39 (43%), Positives = 21/39 (53%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
                 EKPY+C QC K+F  K    +H RVHTG  P +
Sbjct: 3   SGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 44.5 bits (106), Expect = 1e-07
 Identities = 12/31 (38%), Positives = 13/31 (41%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
            S    GEKPY C+ C   F     L  H R
Sbjct: 2   SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR 32

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.9 bits (128), Expect = 6e-11
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 +KPY+C +C K+F        H RVHTGE+     
Sbjct: 4   GSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.7 bits (104), Expect = 2e-07
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                +G+KPY C+ C  TF    HL +H+R
Sbjct: 3   SGSSGSGKKPYECKECRKTFIQIGHLNQHKR 33

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 53.0 bits (128), Expect = 6e-11
 Identities = 17/41 (41%), Positives = 19/41 (46%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKPY C +C KSF        H RVH+GEKP    
Sbjct: 4   GSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 46.8 bits (112), Expect = 1e-08
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY C+ C  +FR +S L +H+R
Sbjct: 3   SGSSGTGEKPYNCKECGKSFRWASCLLKHQR 33

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 52.9 bits (128), Expect = 6e-11
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                EKP++C +C K F++      H R H+GEKP    
Sbjct: 5   SSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 44.9 bits (107), Expect = 7e-08
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                +GEKP+ CE C   F  +S  + H+R
Sbjct: 3   SGSSGSGEKPFKCEECGKGFYTNSQCYSHQR 33

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.9 bits (128), Expect = 7e-11
 Identities = 16/39 (41%), Positives = 19/39 (48%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                E PY+C +C K+F  KY    H R H GEKP   
Sbjct: 5   SSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.0 bits (105), Expect = 2e-07
 Identities = 11/31 (35%), Positives = 12/31 (38%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGE PY C  C   F     L  H+R
Sbjct: 3   SGSSGTGENPYECHECGKAFSRKYQLISHQR 33

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 53.5 bits (129), Expect = 7e-11
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 68  RDHQKEKPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
               K +PY C    C + F    +   H R+HTG+KP+ C  C   F  S HL  H R
Sbjct: 12  YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 42.3 bits (100), Expect = 1e-06
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 28 KAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFS 87
            +    +   + RP + C     CDR F+  + L  H  R H  +KP+QC  C ++ FS
Sbjct: 5  PMNNLLNYVVPKMRP-YACP-VESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRN-FS 60

Query: 88 KYDH-KIHSRVHT 99
          + DH   H R HT
Sbjct: 61 RSDHLTTHIRTHT 73

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.5 bits (127), Expect = 7e-11
 Identities = 15/40 (37%), Positives = 18/40 (45%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 EK Y C +C KSF        H R+H+GEKP   
Sbjct: 4   GSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 5e-08
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEK Y C+ C  +F  +  L +H R
Sbjct: 3   SGSSGTGEKLYNCKECGKSFSRAPCLLKHER 33

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.5 bits (127), Expect = 7e-11
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKPY+CS C K+F  +    +H R+H+G+KP    
Sbjct: 4   GSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 4e-08
 Identities = 13/32 (40%), Positives = 14/32 (43%)

Query: 93  IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                 TGEKPY C  C   F H   L  H+R
Sbjct: 2   SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQR 33

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 52.5 bits (127), Expect = 7e-11
 Identities = 14/39 (35%), Positives = 16/39 (41%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
                 EKPY C  C   F      K H R+HTG  P +
Sbjct: 3   SGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 47.5 bits (114), Expect = 7e-09
 Identities = 15/31 (48%), Positives = 15/31 (48%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
            S    GEKPY CE C   FRH   L  H R
Sbjct: 2   SSGSSGGEKPYPCEICGTRFRHLQTLKSHLR 32

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.5 bits (127), Expect = 8e-11
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 +K ++C++C K+F       +H R+HTGEKP   
Sbjct: 4   GSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 5e-08
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                 G+K + C  C  TF  SS L  H+R
Sbjct: 3   SGSSGAGKKLFKCNECKKTFTQSSSLTVHQR 33

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.5 bits (127), Expect = 8e-11
 Identities = 14/41 (34%), Positives = 18/41 (43%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                  KPY C++C K+F        H  +HTGEKP    
Sbjct: 4   GSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 6e-08
 Identities = 11/31 (35%), Positives = 12/31 (38%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TG KPY C  C   F   S L  H+ 
Sbjct: 3   SGSSGTGVKPYMCNECGKAFSVYSSLTTHQV 33

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.5 bits (127), Expect = 9e-11
 Identities = 15/41 (36%), Positives = 18/41 (43%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKP+ C  C K+F        H R+HTGEKP    
Sbjct: 4   GSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 6e-08
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKP+ C  C   F     L +HRR
Sbjct: 3   SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRR 33

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.5 bits (127), Expect = 9e-11
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 K ++C++C K+F  K    +H ++HTGEKP    
Sbjct: 5   SSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.7 bits (104), Expect = 2e-07
 Identities = 9/31 (29%), Positives = 12/31 (38%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TG K + C  C   F   S L  H++
Sbjct: 3   SGSSGTGGKHFECTECGKAFTRKSTLSMHQK 33

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.5 bits (127), Expect = 9e-11
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKPY+C++C K+F +  +   H  +HTGEKP    
Sbjct: 4   GSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 4e-08
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY C  C   FR  S+L  H+ 
Sbjct: 3   SGSSGTGEKPYKCNECGKAFRAHSNLTTHQV 33

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 52.6 bits (127), Expect = 9e-11
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 66  IKRDHQKEKPYQCSQCSKSFFSKYDHKIHS-RVHTGEKPYACEFCPLTF 113
                   KPY C  C K F        H  +VHT E+P+ C+      
Sbjct: 3   SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 46.0 bits (110), Expect = 4e-08
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 38 SEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSF 85
          S  +P + C+    C + F+  + LN HIK+ H  E+P++C       
Sbjct: 8  SVGKP-YICQ---SCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 44.5 bits (106), Expect = 1e-07
 Identities = 10/34 (29%), Positives = 14/34 (41%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLH 127
                +  KPY C+ C   F    HL  H + +H
Sbjct: 3   SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.1 bits (126), Expect = 1e-10
 Identities = 18/41 (43%), Positives = 21/41 (51%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKPY C++C KSF  K     H R+HTGEKP    
Sbjct: 4   GSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 3e-08
 Identities = 16/31 (51%), Positives = 17/31 (54%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY C  C  +F   SHL RHRR
Sbjct: 3   SGSSGTGEKPYICNECGKSFIQKSHLNRHRR 33

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.1 bits (126), Expect = 1e-10
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKPY+C  CSK+F  K     H + HTGEKP    
Sbjct: 4   GSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 4e-08
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY C+ C   F   +HL +H++
Sbjct: 3   SGSSGTGEKPYECKVCSKAFTQKAHLAQHQK 33

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 52.1 bits (126), Expect = 1e-10
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                EKP++C +C K F  +    +H ++HTGEKP   
Sbjct: 5   SSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 43.7 bits (104), Expect = 2e-07
 Identities = 11/31 (35%), Positives = 13/31 (41%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKP+ C  C   F   S L  H +
Sbjct: 3   SGSSGTGEKPFKCVECGKGFSRRSALNVHHK 33

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.2 bits (126), Expect = 1e-10
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                  KPYQC++C K+F        H RVHTGEKP    
Sbjct: 4   GSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-08
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 93  IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                 TG KPY C  C   F  +S L RH+R
Sbjct: 2   SSGSSGTGGKPYQCNECGKAFSQTSKLARHQR 33

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 52.1 bits (126), Expect = 1e-10
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 E PY+CS+C K+F  K     H R H GE   + 
Sbjct: 2   SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 39.4 bits (93), Expect = 7e-06
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 95  SRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
           S   +GE PY C  C   F     L  H+R
Sbjct: 2   SSGSSGENPYECSECGKAFNRKDQLISHQR 31

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.1 bits (126), Expect = 1e-10
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                E+PY C+ C K+F  + +   H ++HTGEKP   
Sbjct: 5   SSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.4 bits (106), Expect = 1e-07
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGE+PY C  C   F   S+L +H++
Sbjct: 3   SGSSGTGERPYICTVCGKAFTDRSNLIKHQK 33

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.8 bits (125), Expect = 1e-10
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKPY C +C K+F      + H R+HTGEKP    
Sbjct: 4   GSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.8 bits (112), Expect = 1e-08
 Identities = 15/31 (48%), Positives = 16/31 (51%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY CE C   F H S L  H+R
Sbjct: 3   SGSSGTGEKPYNCEECGKAFIHDSQLQEHQR 33

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.8 bits (125), Expect = 2e-10
 Identities = 16/40 (40%), Positives = 18/40 (45%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 EK Y+C  C K F      + H RVHTGEKP   
Sbjct: 4   GSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 6e-09
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 93  IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                  GEK Y C+ C   F  SSHL  H+R
Sbjct: 2   SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQR 33

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.7 bits (125), Expect = 2e-10
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 +KPY+C++C K F        H  +HTGEKP    
Sbjct: 4   GSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-08
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TG+KPY C  C   F  +SHL RHR 
Sbjct: 3   SGSSGTGKKPYKCNECGKVFTQNSHLARHRG 33

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.7 bits (125), Expect = 2e-10
 Identities = 14/41 (34%), Positives = 16/41 (39%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKPY C+ C K+F        H RVHT E      
Sbjct: 4   GSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 2e-08
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY+C  C   F  S+HL +H R
Sbjct: 3   SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLR 33

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.8 bits (125), Expect = 2e-10
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKPY+C+QC K+F  +     H  +HTG+KP    
Sbjct: 4   GSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.4 bits (106), Expect = 1e-07
 Identities = 12/31 (38%), Positives = 13/31 (41%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY C  C   F   S L  H+ 
Sbjct: 3   SGSSGTGEKPYECNQCGKAFSVRSSLTTHQA 33

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 51.8 bits (125), Expect = 2e-10
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 EKPY+C++C K+F  K    +H R H G    + 
Sbjct: 4   GSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 43.3 bits (103), Expect = 3e-07
 Identities = 12/31 (38%), Positives = 13/31 (41%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                +GEKPY C  C   F   S L  H R
Sbjct: 3   SGSSGSGEKPYECNECGKAFIWKSLLIVHER 33

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.7 bits (125), Expect = 2e-10
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKPY+C  C K+F        H RVH+GEKP    
Sbjct: 4   GSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 2e-08
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 93  IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                 TGEKPY C+ C   F H + L +H+R
Sbjct: 2   SSGSSGTGEKPYECDVCRKAFSHHASLTQHQR 33

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.7 bits (125), Expect = 2e-10
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 EKPY+C +C K+F  K +   H R+HTGEKP   
Sbjct: 4   GSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 7e-08
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY C  C   F   ++L +H+R
Sbjct: 3   SGSSGTGEKPYRCGECGKAFAQKANLTQHQR 33

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.7 bits (125), Expect = 2e-10
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                EKPY C++C K+F  + +   H ++HT +KP    
Sbjct: 5   SSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 6e-08
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY C  C   F   S+L +H++
Sbjct: 3   SGSSGTGEKPYICAECGKAFTIRSNLIKHQK 33

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 51.4 bits (124), Expect = 2e-10
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
                 ++ Y+C +C KSF  K    +H R+HTG  P +
Sbjct: 2   SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 41.4 bits (98), Expect = 1e-06
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 95  SRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
           S   +G++ Y C+ C  +FR    L  H R
Sbjct: 2   SSGSSGQRVYECQECGKSFRQKGSLTLHER 31

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-10
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKPY+C++C K F        H R+HTGEKP    
Sbjct: 4   GSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 1e-08
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY C  C   FRH+S+L RH+R
Sbjct: 3   SGSSGTGEKPYKCNECGKVFRHNSYLSRHQR 33

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-10
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKPY+C++C K F        H R+HTG KP    
Sbjct: 4   GSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 6e-08
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY C  C   F  +SHL  H+R
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLANHQR 33

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-10
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                EKP++C +C KSF       +H R+HTGE P   
Sbjct: 5   SSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 7e-08
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKP+ C  C  +F  +S L  H+R
Sbjct: 3   SGSSGTGEKPHECRECGKSFSFNSQLIVHQR 33

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-10
 Identities = 16/40 (40%), Positives = 19/40 (47%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 EKP++C +C K F        H RVHTGEKP   
Sbjct: 4   GSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 4e-08
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                +GEKP+ CE C   F  +S L  H+R
Sbjct: 3   SGSSGSGEKPFKCEECGKRFTQNSQLHSHQR 33

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.3 bits (124), Expect = 2e-10
 Identities = 15/41 (36%), Positives = 18/41 (43%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKPY+C +C K F        H  +HTGEKP    
Sbjct: 4   GSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 2e-08
 Identities = 15/31 (48%), Positives = 17/31 (54%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY C  C   FR +SHL RH+ 
Sbjct: 3   SGSSGTGEKPYKCHECGKVFRRNSHLARHQL 33

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.4 bits (124), Expect = 2e-10
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKPY+C++C K+F        H R+HTGEKP    
Sbjct: 4   GSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 5e-08
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY C  C   F  +S L RH+R
Sbjct: 3   SGSSGTGEKPYKCNECGKAFSQTSKLARHQR 33

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 3e-10
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKPY+C +C K+F        H R+HTG++P    
Sbjct: 4   GSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.9 bits (107), Expect = 7e-08
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY C  C   F  +S   +H+R
Sbjct: 3   SGSSGTGEKPYKCMECGKAFGDNSSCTQHQR 33

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 3e-10
 Identities = 17/40 (42%), Positives = 19/40 (47%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 EKP+QC +C K F        H RVHTGEKP   
Sbjct: 4   GSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 4e-08
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                +GEKP+ CE C   F  +SHL  H+R
Sbjct: 3   SGSSGSGEKPFQCEECGKRFTQNSHLHSHQR 33

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 51.0 bits (123), Expect = 3e-10
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                  K +QC +C + F  K     H R+HTGEKP   
Sbjct: 4   GSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 43.7 bits (104), Expect = 2e-07
 Identities = 9/31 (29%), Positives = 13/31 (41%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                +  K + C  C   F   SHL +H+R
Sbjct: 3   SGSSGSSTKSHQCHECGRGFTLKSHLNQHQR 33

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 3e-10
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 E+P++C++C KSF        H R+HTGEKP    
Sbjct: 4   GSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 8e-08
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGE+P+ C  C  +F  S+HL +H+R
Sbjct: 3   SGSSGTGERPHKCNECGKSFIQSAHLIQHQR 33

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 51.0 bits (123), Expect = 3e-10
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 E+P++C++C K F  +     H R+H+ EK    
Sbjct: 4   GSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.1 bits (105), Expect = 2e-07
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                +GE+P+ C  C   F   SHL  H R
Sbjct: 3   SGSSGSGERPFKCNECGKGFGRRSHLAGHLR 33

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 50.6 bits (122), Expect = 4e-10
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 E PY+C +C K F  K     H + H+G+   + 
Sbjct: 4   GSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 41.3 bits (98), Expect = 2e-06
 Identities = 10/31 (32%), Positives = 12/31 (38%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGE PY C  C   F     L  H++
Sbjct: 3   SGSSGTGENPYECCECGKVFSRKDQLVSHQK 33

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 51.9 bits (124), Expect = 4e-10
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 51  ECDRVFTTRNMLNIHIKRDHQKEKPYQ--------CSQCSKSFFSKYDHKIHSRVHTGEK 102
            CDR F+T + L  H+  +H               C +  KSF +KY    H RVHTGEK
Sbjct: 30  SCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89

Query: 103 PYAC 106
               
Sbjct: 90  SGPS 93

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 4e-10
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKPY+C++C K F        H RVHTG KP    
Sbjct: 4   GSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 6e-08
 Identities = 16/31 (51%), Positives = 17/31 (54%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY C  C   F  +SHL RHRR
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLARHRR 33

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 50.7 bits (122), Expect = 4e-10
 Identities = 14/41 (34%), Positives = 18/41 (43%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EK + C +C K+F      +IH RVH GEK     
Sbjct: 4   GSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 43.3 bits (103), Expect = 3e-07
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                +GEK + C+ C   F + S L  H+R
Sbjct: 3   SGSSGSGEKSHTCDECGKNFCYISALRIHQR 33

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 50.6 bits (122), Expect = 5e-10
 Identities = 17/40 (42%), Positives = 20/40 (50%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 EKPY+C +C K+F        H RVHTGEKP   
Sbjct: 4   GSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 45.6 bits (109), Expect = 4e-08
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY C+ C   F  ++HL +H+R
Sbjct: 3   SGSSGTGEKPYECKECGKAFSQTTHLIQHQR 33

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 5e-10
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKP++C +C K+F        H R+HTGEKP    
Sbjct: 4   GSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 3e-08
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                +GEKP+ C+ C   FR + HL  H R
Sbjct: 3   SGSSGSGEKPFKCKECGKAFRQNIHLASHLR 33

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 50.6 bits (122), Expect = 5e-10
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EK Y+C++C K F        H ++HTGEKP    
Sbjct: 4   GSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 44.8 bits (107), Expect = 7e-08
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEK Y C  C   F  +S L +H++
Sbjct: 3   SGSSGTGEKRYKCNECGKVFSRNSQLSQHQK 33

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 5e-10
 Identities = 16/40 (40%), Positives = 19/40 (47%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 EKPY C  C K+F    +   H R+HTGEKP   
Sbjct: 4   GSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 2e-08
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                +GEKPY C++C   F  S+ L RH+R
Sbjct: 3   SGSSGSGEKPYVCDYCGKAFGLSAELVRHQR 33

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 5e-10
 Identities = 16/40 (40%), Positives = 20/40 (50%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 EKPY+C++C K F        H R+HTGEKP   
Sbjct: 4   GSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.9 bits (110), Expect = 3e-08
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                +GEKPY C  C   F  +SHL  H R
Sbjct: 3   SGSSGSGEKPYKCNECGKVFTQNSHLTNHWR 33

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.2 bits (121), Expect = 6e-10
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKPY+C++C K F        H  +HTGEKP    
Sbjct: 4   GSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 4e-08
 Identities = 15/31 (48%), Positives = 16/31 (51%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY C  C   F  +SHL RHR 
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLARHRG 33

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 50.2 bits (121), Expect = 6e-10
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
                 EKPY+C  C   F      + H  +HTG  P +
Sbjct: 3   SGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 46.0 bits (110), Expect = 3e-08
 Identities = 13/31 (41%), Positives = 14/31 (45%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
            S    GEKPY CE C   F   +HL  H  
Sbjct: 2   SSGSSGGEKPYKCETCGARFVQVAHLRAHVL 32

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.3 bits (121), Expect = 6e-10
 Identities = 11/40 (27%), Positives = 14/40 (35%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 EKP+QC +C  +F        H R H    P   
Sbjct: 4   GSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.9 bits (107), Expect = 6e-08
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRS 125
                TGEKP+ C+ C + F  S  LF+H RS
Sbjct: 3   SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS 34

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.2 bits (121), Expect = 7e-10
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKPY+C++C K F        H  +HTGEKP    
Sbjct: 4   GSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.5 bits (109), Expect = 4e-08
 Identities = 15/31 (48%), Positives = 16/31 (51%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY C  C   F  +SHL RHR 
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLVRHRG 33

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.8 bits (120), Expect = 8e-10
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 EKP++C +C KS+  +     H RVHTGEKP   
Sbjct: 4   GSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.4 bits (106), Expect = 1e-07
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKP+ C  C  ++    HL +H+R
Sbjct: 3   SGSSGTGEKPFKCGECGKSYNQRVHLTQHQR 33

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.8 bits (120), Expect = 9e-10
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKPY+CS+C K+F        H R+HTG +P    
Sbjct: 4   GSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.3 bits (111), Expect = 2e-08
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                +GEKPY C  C   F   +HL  HRR
Sbjct: 3   SGSSGSGEKPYKCSECGKAFHRHTHLNEHRR 33

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 49.5 bits (119), Expect = 1e-09
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLH 127
                TG+KPY C  C   F  ++ L RH R  H
Sbjct: 3   SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 47.6 bits (114), Expect = 8e-09
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSR-VHTGEKPYAC 106
                 +KPY+C +C K+F        H R  HTGEKP   
Sbjct: 4   GSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.7 bits (117), Expect = 2e-09
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 EKPY+C  C K+F        H  VH+GE+P   
Sbjct: 4   GSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 8e-09
 Identities = 15/31 (48%), Positives = 17/31 (54%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                TGEKPY C+ C   FR SSHL +H  
Sbjct: 3   SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHS 33

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 4e-09
 Identities = 11/40 (27%), Positives = 16/40 (40%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                 E+PY C++C K+F        H + H  EK    
Sbjct: 4   GSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.7 bits (104), Expect = 2e-07
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                +GE+PY C  C   F   SHL  H +
Sbjct: 3   SGSSGSGERPYGCNECGKNFGRHSHLIEHLK 33

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 46.5 bits (110), Expect = 2e-08
 Identities = 13/42 (30%), Positives = 16/42 (38%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
              +  K   C  C K F   Y    H   H+GEKPY+    
Sbjct: 5   SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 45.5 bits (107), Expect = 7e-08
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 76  YQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRS 125
           Y C +C          K H R HT  +PY C +C  +F+   +L +H +S
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 41.6 bits (97), Expect = 2e-06
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 43  RFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
           ++ CE   EC       +ML  HI R H   +PY C+ C+ SF +K +   H +     K
Sbjct: 1   KYICE---ECGIRXKKPSMLKKHI-RTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 45.0 bits (107), Expect = 7e-08
 Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 67  KRDHQKEKPYQCSQ--CSKSFFSKYDHKIHSRVHTGEKPYACE 107
                 EKP+ C+   C   F    +   H R H+G KP    
Sbjct: 4   GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 40.7 bits (96), Expect = 3e-06
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 94  HSRVHTGEKPYACEF--CPLTFRHSSHLFRHRR 124
                TGEKP+AC +  C   F  S  L RHRR
Sbjct: 3   SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRR 35

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 44.6 bits (106), Expect = 1e-07
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 95  SRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
           S   +GEKPY+C  C  TF  ++ L +H++
Sbjct: 2   SSGSSGEKPYSCAECKETFSDNNRLVQHQK 31

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 43.5 bits (103), Expect = 2e-07
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 70  HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
              EKPY C++C ++F        H ++HT +   + 
Sbjct: 5   SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 43.7 bits (104), Expect = 2e-07
 Identities = 10/31 (32%), Positives = 12/31 (38%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                T  K Y C  C   F    HL RH++
Sbjct: 3   SGSSGTDSKSYNCNECGKAFTRIFHLTRHQK 33

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 41.0 bits (97), Expect = 2e-06
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
                  K Y C++C K+F   +    H ++HT +   + 
Sbjct: 4   GSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 40.4 bits (95), Expect = 3e-06
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
            +R  TG KP+ C  C  +F  S HL  HR+
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 40.4 bits (94), Expect = 7e-06
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 7/58 (12%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
           ++ H  ++  +CS+C   F       I     +  K   CE C       + L +   
Sbjct: 10  QKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEG 60

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 36.2 bits (83), Expect = 3e-04
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRS 125
             ++H G++   C  C + F   S L R +  
Sbjct: 9   RQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTP 40

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 36.2 bits (83), Expect = 3e-04
 Identities = 6/36 (16%), Positives = 11/36 (30%)

Query: 70  HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
             + K   C +C K    +          +G+K   
Sbjct: 34  LSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTSG 69

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 40.9 bits (95), Expect = 1e-05
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 7/93 (7%)

Query: 43  RFKCEGRGECDRVFTTRNMLNIHIKRD-HQKEKPYQCSQCSKSFFSKYDHK---IHSRVH 98
           +F+C+   +C   + T   L +H+    H ++  ++    +   +SK   +         
Sbjct: 19  KFRCK---DCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKE 75

Query: 99  TGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYE 131
             +K   C +C  +F     L  H        +
Sbjct: 76  DAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK 108

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 37.1 bits (85), Expect = 3e-04
 Identities = 8/41 (19%), Positives = 14/41 (34%)

Query: 87  SKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLH 127
           S    K++  + TG   + C+ C   +     L  H     
Sbjct: 3   SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETG 43

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 37.1 bits (85), Expect = 3e-04
 Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 5/95 (5%)

Query: 12  FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
           F C+ CS  +     L  H+       ++    + +           +  L    +    
Sbjct: 20  FRCKDCSAAYDTLVELTVHMNETGHYRDD--NHETDNNNPKRWSKPRKRSLLEM-EGKED 76

Query: 72  KEKPYQCSQCSKSFFSKYDHKIH--SRVHTGEKPY 104
            +K  +C  C  SF S  D  +H     H  +   
Sbjct: 77  AQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG 111

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 39.1 bits (90), Expect = 4e-05
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 7/97 (7%)

Query: 32  RNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDH 91
            +     E +  ++C     C+   ++      H +          C  CS  FFS  + 
Sbjct: 5   SSGASPVENKEVYQCR---LCNAKLSSLLEQGSHERLCRNA---AVCPYCSLRFFSP-EL 57

Query: 92  KIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQ 128
           K         K   C  C  TF+ S  ++RH+  +H 
Sbjct: 58  KQEHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHN 94

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 37.5 bits (87), Expect = 4e-05
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 70  HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
              E P++CS+C + F  +     H R H  +  
Sbjct: 7   GAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 35.2 bits (81), Expect = 3e-04
 Identities = 9/31 (29%), Positives = 13/31 (41%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                 GE P+ C  C   F   ++L +H R
Sbjct: 3   SGSSGAGENPFKCSKCDRVFTQRNYLVQHER 33

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 38.8 bits (89), Expect = 9e-05
 Identities = 13/60 (21%), Positives = 16/60 (26%), Gaps = 2/60 (3%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLH 127
              +    + C  C   F S    K H R    E    C  C   F  +     H    H
Sbjct: 67  LASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKH 124

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.96
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.96
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.96
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.95
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.95
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.95
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.94
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.93
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.93
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.93
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.92
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.92
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.89
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.88
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.87
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.87
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.86
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.86
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.85
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.85
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.84
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.84
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.84
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.83
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.83
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.83
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.82
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.81
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.81
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.8
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.8
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.8
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.8
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.79
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.79
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.79
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.78
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.77
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.76
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.76
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.75
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.75
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.75
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.75
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.74
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.74
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.74
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.73
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.72
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.72
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.71
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.71
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.69
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.69
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.69
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.68
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.67
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.67
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.66
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.65
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.65
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.63
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.62
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.62
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.57
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.57
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.56
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.56
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.55
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.54
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.49
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.49
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.48
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.47
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.47
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.46
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.46
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.45
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.45
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.45
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.45
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.45
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.45
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.44
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.44
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.44
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.44
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.44
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.44
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.44
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.44
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.44
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.44
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.44
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.44
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.44
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.44
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.44
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.44
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.43
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.43
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.43
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.43
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.43
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.43
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.43
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.43
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.43
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.43
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.43
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.43
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.43
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.43
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.42
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.42
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.42
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.42
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.42
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.42
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.42
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.41
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.41
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.41
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.41
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.41
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.4
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.4
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.4
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.39
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.39
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.39
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.38
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.36
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.36
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.35
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.35
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.34
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.34
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.33
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.33
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.33
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.33
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.32
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.32
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.32
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.32
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.32
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.32
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.31
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.31
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.3
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.3
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.3
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.3
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.3
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.3
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.29
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.29
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.29
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.29
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.29
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.29
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.29
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.29
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.28
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.28
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.28
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.28
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.28
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.28
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.28
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.28
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.27
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.27
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.26
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.26
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.25
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.25
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.25
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.25
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.24
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.24
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.23
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.23
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.23
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.21
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.21
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.21
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.21
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.2
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.2
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.19
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.19
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.19
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.19
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.18
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.18
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.16
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.16
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.15
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.13
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.13
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	99.13
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.13
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	99.1
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.05
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.04
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.02
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.02
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.01
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.0
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.99
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.99
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.98
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.98
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.97
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.96
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.93
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.92
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.9
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.9
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.89
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.89
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.89
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.89
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.88
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.88
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.87
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.84
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.84
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.83
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.82
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.81
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.8
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.8
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.79
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.79
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.25
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.25
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.75
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.75
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.74
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.73
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.72
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.72
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.72
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.71
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.69
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.69
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.69
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.69
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.68
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.68
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.65
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.64
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.64
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.62
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.59
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.58
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.57
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.98
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.56
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.55
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.53
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.5
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.5
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.49
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.47
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.47
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.46
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.45
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.45
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.44
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.41
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.38
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.38
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.37
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.71
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.67
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.29
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.61
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.21
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.05
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.03
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.63
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	97.26
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.18
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.93
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.69
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	96.23
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.08
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	95.82
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	94.76
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	93.58
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	93.2
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	92.11
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	91.71
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	91.38
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.94
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	90.6
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	90.59
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	90.47
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	90.26
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	89.97
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	89.65
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	87.53
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	87.2
2ct5_A	73	Zinc finger BED domain containing protein 1; DREF	87.07
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	85.98
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	85.19
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	83.38
1lko_A	191	Rubrerythrin all-iron(II) form; reduced form, DIIR	81.71
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	80.48

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.96  E-value=2.6e-30  Score=156.86  Aligned_cols=117  Identities=38%  Similarity=0.740  Sum_probs=90.0

Q ss_pred             cceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccC
Q psy6628           8 HRVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFS   87 (132)
Q Consensus         8 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~   87 (132)
                      ++++|.|+.|++.|.....|..|+..|.+   +.+ |.|+   .|++.|.....|..|+ ..|.++++|.|..|++.|..
T Consensus        74 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~-~~C~---~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~  145 (190)
T 2i13_A           74 GEKPYKCPECGKSFSQRANLRAHQRTHTG---EKP-YACP---ECGKSFSQLAHLRAHQ-RTHTGEKPYKCPECGKSFSR  145 (190)
T ss_dssp             CCCCEECTTTCCEESCHHHHHHHHHHHHT---CCC-EECT---TTCCEESSHHHHHHHH-HHHHCCCCEECTTTCCEESC
T ss_pred             CCCCccCcccCCccCCHHHHHHHHHhcCC---CCC-CcCC---CCCCccCCHHHHHHHH-HHhCCCCCeECCCCCcccCC
Confidence            45567777777777777777777777665   444 7787   7888888888888887 66888888888888888888


Q ss_pred             hhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          88 KYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        88 ~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      ...|..|+..|.+++||.|++|++.|...+.|..|++.|+|++||
T Consensus       146 ~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~k~~  190 (190)
T 2i13_A          146 EDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKTS  190 (190)
T ss_dssp             HHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHTTC------
T ss_pred             HHHHHHHHHhcCCCCCeECCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            888888888888888899999999999888999998888888886

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.96  E-value=2.2e-28  Score=139.02  Aligned_cols=115  Identities=31%  Similarity=0.631  Sum_probs=105.4

Q ss_pred             ccceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhh--ccCCCCCccCCccccc
Q psy6628           7 IHRVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKR--DHQKEKPYQCSQCSKS   84 (132)
Q Consensus         7 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~--~~~~~~~~~c~~C~~~   84 (132)
                      .++++|.|++|++.|.....|..|++.|.+   +.+ |.|+   .|++.|.....|..|+..  .+.+.++|.|..|++.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~-~~C~---~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~   75 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTG---EKP-FECP---KCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQET   75 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSS---CCS-CBCT---TTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCE
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCC---CCC-eECC---CCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCc
Confidence            567889999999999999999999999986   555 9999   999999999999999843  3678899999999999


Q ss_pred             ccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHhhhh
Q psy6628          85 FFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus        85 ~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  128 (132)
                      |.....|..|+..|.+++||.|++|++.|...+.|..|++..|+
T Consensus        76 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~  119 (124)
T 2dlq_A           76 FRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS  119 (124)
T ss_dssp             ESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSS
T ss_pred             cCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999986554

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.96  E-value=1.2e-28  Score=149.54  Aligned_cols=119  Identities=38%  Similarity=0.743  Sum_probs=102.5

Q ss_pred             cccceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccc
Q psy6628           6 NIHRVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSF   85 (132)
Q Consensus         6 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~   85 (132)
                      +.++++|.|+.|++.|.....|..|+.+|.+   +.+ |.|+   .|++.|.....|..|+ ..|.++++|.|..|++.|
T Consensus        44 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~-~~C~---~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f  115 (190)
T 2i13_A           44 HTGEKPYKCPECGKSFSDKKDLTRHQRTHTG---EKP-YKCP---ECGKSFSQRANLRAHQ-RTHTGEKPYACPECGKSF  115 (190)
T ss_dssp             C---CCEECTTTCCEESSHHHHHHHHHHHHC---CCC-EECT---TTCCEESCHHHHHHHH-HHHHTCCCEECTTTCCEE
T ss_pred             cCCCCCccCCCcCchhCCHHHHHHHHHhcCC---CCC-ccCc---ccCCccCCHHHHHHHH-HhcCCCCCCcCCCCCCcc
Confidence            3456788899999999998999999888876   444 8898   8999999999999998 678888899999999999


Q ss_pred             cChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          86 FSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        86 ~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .....|..|+..|.++++|.|++|++.|...+.|..|++.|++++||
T Consensus       116 ~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~  162 (190)
T 2i13_A          116 SQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPY  162 (190)
T ss_dssp             SSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCE
T ss_pred             CCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCe
Confidence            99999999999999999999999999999999999999999888875

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.95  E-value=4e-28  Score=138.08  Aligned_cols=116  Identities=30%  Similarity=0.662  Sum_probs=101.6

Q ss_pred             cceeeeCC--CCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCc--ccc
Q psy6628           8 HRVVFTCQ--VCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ--CSK   83 (132)
Q Consensus         8 ~~~~~~C~--~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~--C~~   83 (132)
                      .+++|.|+  .|++.|.....|..|+.+| +   ..+ |.|+   .|++.|.....|..|+ ..|.++++|.|..  |++
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~---~~~-~~C~---~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~~~C~~   72 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-G---PRV-HVCA---ECGKAFVESSKLKRHQ-LVHTGEKPFQCTFEGCGK   72 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG-S---CCC-EECT---TTCCEESSHHHHHHHG-GGTSCCCCEECCSTTCCC
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc-C---CCC-eECC---CCCchhCCHHHHHHHH-HHcCCCCCeeCCCCCCcC
Confidence            35689999  8999999999999999988 4   444 9999   9999999999999998 7899999999986  999


Q ss_pred             cccChhhHHHHHHHhcCCCCccCC--CchhccccchHHHHHHHhhhhhccC
Q psy6628          84 SFFSKYDHKIHSRVHTGEKPYACE--FCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        84 ~~~~~~~l~~h~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|.....|..|+..|.++++|.|+  .|++.|...+.|..|+++|++++++
T Consensus        73 ~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             EESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             ccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            999999999999999999999996  4999999999999999999999875

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.95  E-value=5.2e-28  Score=142.44  Aligned_cols=122  Identities=33%  Similarity=0.535  Sum_probs=107.8

Q ss_pred             ccceeeeCCCCccccCChhHHHHHHHh-hcCCCCCCC----ccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCc-
Q psy6628           7 IHRVVFTCQVCSKIFSYENGLKAHVRN-KHGSSEERP----RFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ-   80 (132)
Q Consensus         7 ~~~~~~~C~~C~~~f~~~~~l~~h~~~-~~~~~~~~~----~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~-   80 (132)
                      .....|.|..|++.|.....|..|+.. |.+......    .|.|+   .|++.|.....|..|+ ..|.++++|.|.. 
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~---~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~~   96 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECP---REGKSFKAKYKLVNHI-RVHTGEKPFPCPFP   96 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCT---TSSCCCSSHHHHHHHT-HHHHCCCSEECSCT
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCC---CcccccCCHHHHHHHH-HhcCCCCcccCCcC
Confidence            345679999999999999999999998 443211111    16787   9999999999999998 6799999999998 


Q ss_pred             -ccccccChhhHHHHHHHhcCCCCccCCC--chhccccchHHHHHHHhhhhhccC
Q psy6628          81 -CSKSFFSKYDHKIHSRVHTGEKPYACEF--CPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        81 -C~~~~~~~~~l~~h~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                       |++.|.....|..|+..|.++++|.|.+  |++.|...+.|..|+++|++++||
T Consensus        97 ~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~  151 (155)
T 2rpc_A           97 GCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSG  151 (155)
T ss_dssp             TTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCS
T ss_pred             CCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCC
Confidence             9999999999999999999999999997  999999999999999999999987

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.95  E-value=1.4e-27  Score=134.83  Aligned_cols=114  Identities=35%  Similarity=0.750  Sum_probs=104.1

Q ss_pred             ccceeeeCCC--CccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCccccc
Q psy6628           7 IHRVVFTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKS   84 (132)
Q Consensus         7 ~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~   84 (132)
                      .++++|.|.+  |++.|.....|..|++.|.+   +.+ |.|+.. .|++.|.....|..|+ ..|.++++|.|..|++.
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~~-~~C~~~-~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~   75 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTG---EKP-YQCDFK-DCERRFSRSDQLKRHQ-RRHTGVKPFQCKTCQRK   75 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHT---TCC-EECCST-TCCCEESSHHHHHHHH-HHHHCCCCEECTTTCCE
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCC---CCC-ccCCCC-CCcCccCCHHHHHHHH-HHcCCCCCccCCccCch
Confidence            4678999997  99999999999999999987   455 999611 3999999999999998 67999999999999999


Q ss_pred             ccChhhHHHHHHHhcCCCCccC--CCchhccccchHHHHHHHhh
Q psy6628          85 FFSKYDHKIHSRVHTGEKPYAC--EFCPLTFRHSSHLFRHRRSL  126 (132)
Q Consensus        85 ~~~~~~l~~h~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~~  126 (132)
                      |.....|..|+..|.++++|.|  ++|++.|...+.|..|+++|
T Consensus        76 f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           76 FSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             ESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             hCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            9999999999999999999999  89999999999999999865

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.94  E-value=1.2e-26  Score=133.19  Aligned_cols=103  Identities=25%  Similarity=0.445  Sum_probs=94.0

Q ss_pred             cccceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccc
Q psy6628           6 NIHRVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSF   85 (132)
Q Consensus         6 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~   85 (132)
                      +.|+++|+|++|++.|.....|..|+++|.+   +.+ |.|+   .|++.|.....|..|+ ..|+++++|.|..|++.|
T Consensus        17 h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~---~k~-~~C~---~C~k~F~~~~~L~~H~-~~H~~~k~~~C~~C~k~F   88 (133)
T 2lt7_A           17 VDGRVYYICIVCKRSYVCLTSLRRHFNIHSW---EKK-YPCR---YCEKVFPLAEYRTKHE-IHHTGERRYQCLACGKSF   88 (133)
T ss_dssp             ETTEEEEEETTTCCEESCHHHHHHHHHHHHC---CSC-EECS---SSSCEESSHHHHHHHH-HHHHTCCCEEESSSCCEE
T ss_pred             cCCCcCeECCCCCCCcCCHHHHHHHHHHcCC---CCC-eeCC---ccCeecccccchhhhc-cccCCCccccCCCCCCCc
Confidence            4588999999999999999999999999987   555 9999   9999999999999998 789999999999999999


Q ss_pred             cChhhHHHHHHHhcCC------CCccCCCchhccccc
Q psy6628          86 FSKYDHKIHSRVHTGE------KPYACEFCPLTFRHS  116 (132)
Q Consensus        86 ~~~~~l~~h~~~h~~~------~~~~C~~C~~~f~~~  116 (132)
                      .....|..|+..++++      ++|+|.+|++.|...
T Consensus        89 ~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           89 INYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             SSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCC
T ss_pred             CCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhc
Confidence            9999999999998776      458899999988654

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=4.9e-26  Score=133.93  Aligned_cols=113  Identities=35%  Similarity=0.739  Sum_probs=65.3

Q ss_pred             cceeeeCCCC-----ccccCChhHHHHHHHhhcCCCCCCCccccCCCCC--CcccccChHHHHhhhhhccCCCCCccCCc
Q psy6628           8 HRVVFTCQVC-----SKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGE--CDRVFTTRNMLNIHIKRDHQKEKPYQCSQ   80 (132)
Q Consensus         8 ~~~~~~C~~C-----~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   80 (132)
                      +.++|.|++|     ++.|.....|..|+++|.+   +.+ |.|+   .  |++.|.....|..|+ ..|.++++|.|..
T Consensus        31 ~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~---~~~-~~C~---~~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~  102 (155)
T 2gli_A           31 ERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG---EKP-HKCT---FEGCRKSYSRLENLKTHL-RSHTGEKPYMCEH  102 (155)
T ss_dssp             CSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHC---CCC-CCCC---STTCCCCCSSHHHHHHHH-HHTTTCCCEECCS
T ss_pred             CCcceeCCCCCccchhhhhhhHHHHHHHHHhcCC---CCC-ccCC---CCCCCCcccCHHHHHHHH-HHcCCCCCeeCCC
Confidence            3445555432     2556666666666665554   333 5554   3  666666666666665 4455666666665


Q ss_pred             --ccccccChhhHHHHH-HHhcCCCCccCCC--chhccccchHHHHHHHhhhh
Q psy6628          81 --CSKSFFSKYDHKIHS-RVHTGEKPYACEF--CPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus        81 --C~~~~~~~~~l~~h~-~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~  128 (132)
                        |++.|.....|..|+ ..|.++++|.|++  |++.|...+.|..|++.+||
T Consensus       103 ~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          103 EGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             TTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence              666666666666665 5566666666655  66666666666666665553

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=9.2e-26  Score=132.74  Aligned_cols=121  Identities=33%  Similarity=0.558  Sum_probs=105.2

Q ss_pred             eeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCC--CCCCcccccChHHHHhhhhhccCCCCCccCCc--ccccc
Q psy6628          10 VVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEG--RGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ--CSKSF   85 (132)
Q Consensus        10 ~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~--~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~--C~~~~   85 (132)
                      .+|.|+.|++.|.+...|..|+...+...++.+ |.|+.  |..|++.|.....|..|+ ..|.++++|.|..  |++.|
T Consensus         2 ~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~-~~C~~c~C~~c~~~f~~~~~l~~H~-~~h~~~~~~~C~~~~C~~~f   79 (155)
T 2gli_A            2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKE-FVCHWGGCSRELRPFKAQYMLVVHM-RRHTGEKPHKCTFEGCRKSY   79 (155)
T ss_dssp             CBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSC-CCCCBTTCTTTTCCCSSHHHHHHHT-HHHHCCCCCCCCSTTCCCCC
T ss_pred             CcCCcCCCccccCCHHHHHHHHHhhccCCCCcc-eeCCCCCccchhhhhhhHHHHHHHH-HhcCCCCCccCCCCCCCCcc
Confidence            468999999999999999999984322222444 88874  446679999999999998 7799999999985  99999


Q ss_pred             cChhhHHHHHHHhcCCCCccCCC--chhccccchHHHHHH-HhhhhhccC
Q psy6628          86 FSKYDHKIHSRVHTGEKPYACEF--CPLTFRHSSHLFRHR-RSLHQMYEQ  132 (132)
Q Consensus        86 ~~~~~l~~h~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~-~~~~~~~~~  132 (132)
                      .....|..|+..|.++++|.|++  |++.|...+.|..|+ +.|.+++||
T Consensus        80 ~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~  129 (155)
T 2gli_A           80 SRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPY  129 (155)
T ss_dssp             SSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCE
T ss_pred             cCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCe
Confidence            99999999999999999999998  999999999999999 778888775

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.93  E-value=1.5e-25  Score=135.92  Aligned_cols=117  Identities=31%  Similarity=0.548  Sum_probs=72.1

Q ss_pred             cceeeeC--CCCccccCChhHHHHHHHhhcCCCCCCCcccc--CCCCCCcccccChHHHHhhhhhccCCCCCccCC--cc
Q psy6628           8 HRVVFTC--QVCSKIFSYENGLKAHVRNKHGSSEERPRFKC--EGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS--QC   81 (132)
Q Consensus         8 ~~~~~~C--~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c--~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~--~C   81 (132)
                      ..++|.|  +.|++.|.....|..|+++|.+   +.+ |.|  +   .|++.|.....|..|+ ..|.++++|.|.  .|
T Consensus         9 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~---~~~-~~C~~~---~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~~~C   80 (190)
T 1tf6_A            9 VYKRYICSFADCGAAYNKNWKLQAHLCKHTG---EKP-FPCKEE---GCEKGFTSLHHLTRHS-LTHTGEKNFTCDSDGC   80 (190)
T ss_dssp             -CCCCBCSSTTTCCBCSSHHHHHHHHHHHHC---CCS-SCCSST---TCCCCCSSHHHHHHHH-TTTTTCCCEECCSSSC
T ss_pred             CCcceeCCCCCCcchhCCHHHHHHHHHhcCC---CCC-ccCCCC---CCChhhCCHHHHHHHH-HHccCCCceeCCCCCC
Confidence            4455666  4677777666667777666665   333 666  5   5666666666666666 456666666666  56


Q ss_pred             cccccChhhHHHHH-HHh-cCCCCccC--CCchhccccchHHHHHHHhhhhhccC
Q psy6628          82 SKSFFSKYDHKIHS-RVH-TGEKPYAC--EFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        82 ~~~~~~~~~l~~h~-~~h-~~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      ++.|.....|..|+ ..| .++++|.|  ++|++.|...+.|..|++.|++++||
T Consensus        81 ~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~  135 (190)
T 1tf6_A           81 DLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPY  135 (190)
T ss_dssp             CCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSS
T ss_pred             CCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCc
Confidence            66666666666666 344 34556666  55666666666666666666665554

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.92  E-value=4e-25  Score=134.02  Aligned_cols=118  Identities=32%  Similarity=0.581  Sum_probs=88.4

Q ss_pred             cccceeeeC--CCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhcc-CCCCCccC--Cc
Q psy6628           6 NIHRVVFTC--QVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDH-QKEKPYQC--SQ   80 (132)
Q Consensus         6 ~~~~~~~~C--~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~-~~~~~~~c--~~   80 (132)
                      +.++++|.|  +.|++.|.....|..|+++|.+   +.+ |.|+.. .|++.|.....|..|+...| .+.++|.|  ..
T Consensus        37 h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~~-~~C~~~-~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~  111 (190)
T 1tf6_A           37 HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG---EKN-FTCDSD-GCDLRFTTKANMKKHFNRFHNIKICVYVCHFEN  111 (190)
T ss_dssp             HHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTT---CCC-EECCSS-SCCCEESCHHHHHHHHHTTSSTTTSCCEECSSS
T ss_pred             cCCCCCccCCCCCCChhhCCHHHHHHHHHHccC---CCc-eeCCCC-CCCCccCCHHHHHHHHHHhcCCCcceeeCCCCC
Confidence            345677888  7788888888888888887765   444 777511 37788888888888874455 46677888  77


Q ss_pred             ccccccChhhHHHHHHHhcCCCCccCCC--chhccccchHHHHHHHhhhh
Q psy6628          81 CSKSFFSKYDHKIHSRVHTGEKPYACEF--CPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus        81 C~~~~~~~~~l~~h~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~  128 (132)
                      |++.|.....|..|+.+|.+++||.|++  |++.|...+.|..|+++|++
T Consensus       112 C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          112 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             SCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             CccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC
Confidence            8888888888888888888888888876  88888888888888877665

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.92  E-value=2.7e-26  Score=131.78  Aligned_cols=88  Identities=28%  Similarity=0.468  Sum_probs=83.6

Q ss_pred             CCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHH
Q psy6628          40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHL  119 (132)
Q Consensus        40 ~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l  119 (132)
                      +.+ |.|+   .|++.|.....|..|+ ..|+++++|.|..|++.|.....|..|+.+|++++||.|++|++.|...+.|
T Consensus        20 ek~-y~C~---~C~k~F~~~~~L~~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L   94 (133)
T 2lt7_A           20 RVY-YICI---VCKRSYVCLTSLRRHF-NIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFM   94 (133)
T ss_dssp             EEE-EEET---TTCCEESCHHHHHHHH-HHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHH
T ss_pred             CcC-eECC---CCCCCcCCHHHHHHHH-HHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHH
Confidence            445 9999   9999999999999998 7899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhccC
Q psy6628         120 FRHRRSLHQMYEQ  132 (132)
Q Consensus       120 ~~H~~~~~~~~~~  132 (132)
                      ..|++.+|+++|+
T Consensus        95 ~~H~~~hh~~~p~  107 (133)
T 2lt7_A           95 SSHIKSVHSQDPS  107 (133)
T ss_dssp             HHHHHHHTCCCTT
T ss_pred             HHHhHHhcCCCCC
Confidence            9999999998763

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.89  E-value=9.4e-23  Score=112.85  Aligned_cols=85  Identities=35%  Similarity=0.627  Sum_probs=53.1

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHH
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHR  123 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  123 (132)
                      |.|+   .|++.|.....|..|+ ..|.++++|.|..|++.|.....|..|+..|.++++|.|.+|++.|.....|..|+
T Consensus        18 ~~C~---~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~   93 (106)
T 2ee8_A           18 FICK---FCGRHFTKSYNLLIHE-RTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHK   93 (106)
T ss_dssp             CBCS---SSCCBCSSHHHHHHHH-HHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHH
T ss_pred             eECC---CCCCccCCHHHHHHHH-HHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHH
Confidence            5565   5666666666666665 44555566666666666666666666666666666666666666666666666666


Q ss_pred             HhhhhhccC
Q psy6628         124 RSLHQMYEQ  132 (132)
Q Consensus       124 ~~~~~~~~~  132 (132)
                      +.|++++||
T Consensus        94 ~~H~~~~~~  102 (106)
T 2ee8_A           94 TLHMQTSSP  102 (106)
T ss_dssp             HHTTSCCCC
T ss_pred             HHhCCCCCC
Confidence            666666554

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=2.4e-22  Score=109.31  Aligned_cols=84  Identities=35%  Similarity=0.698  Sum_probs=71.6

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHH
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHR  123 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  123 (132)
                      |.|+   .|++.|.....|..|+ ..|.++++|.|..|++.|.....|..|+..|.++++|.|++|++.|...+.|..|+
T Consensus         9 ~~C~---~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   84 (96)
T 2dmd_A            9 HKCE---VCGKCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHL   84 (96)
T ss_dssp             CCBT---TTTBCCCCHHHHHHHG-GGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHHH
T ss_pred             eECC---CCCCccCCHHHHHHHH-HhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHH
Confidence            8888   8888888888888887 67888888888888888888888888888888888888888888888888888888


Q ss_pred             Hhhhhhcc
Q psy6628         124 RSLHQMYE  131 (132)
Q Consensus       124 ~~~~~~~~  131 (132)
                      +.|+++++
T Consensus        85 ~~h~~~~~   92 (96)
T 2dmd_A           85 RSHTGDSG   92 (96)
T ss_dssp             TTCCSCCC
T ss_pred             HHhcCCCC
Confidence            88887764

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.87  E-value=1.9e-22  Score=108.45  Aligned_cols=86  Identities=36%  Similarity=0.706  Sum_probs=65.0

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHH
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHR  123 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  123 (132)
                      |.|+.. .|++.|.....|..|+ ..|.++++|.|..|++.|.....|..|+..|.++++|.|++|++.|...+.|..|+
T Consensus         5 ~~C~~~-~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   82 (90)
T 1a1h_A            5 YACPVE-SCDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT   82 (90)
T ss_dssp             EECCSS-SCCCEESSHHHHHHHH-HHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHH
T ss_pred             eECCCC-CCCCccCCHHHHHHHH-HHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHHH
Confidence            667510 2777777777777776 56777777888888888888888888888888888888888888888888888888


Q ss_pred             Hhhhhhcc
Q psy6628         124 RSLHQMYE  131 (132)
Q Consensus       124 ~~~~~~~~  131 (132)
                      ++|+++++
T Consensus        83 ~~H~~~k~   90 (90)
T 1a1h_A           83 KIHLRQKD   90 (90)
T ss_dssp             GGGGC---
T ss_pred             HHhcccCC
Confidence            88887763

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.87  E-value=2.2e-21  Score=107.33  Aligned_cols=92  Identities=28%  Similarity=0.635  Sum_probs=85.1

Q ss_pred             ccceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCccccccc
Q psy6628           7 IHRVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFF   86 (132)
Q Consensus         7 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~   86 (132)
                      ..+++|.|.+|++.|.....|..|+.+|.+   +.+ |.|+   .|++.|.....|..|+ ..|.++++|.|..|++.|.
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~-~~C~---~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~   84 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTD---ERP-YTCD---ICHKAFRRQDHLRDHR-YIHSKEKPFKCQECGKGFC   84 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCC---SCC-CBCS---SSCCBCSCHHHHHHHG-GGSCCCCTTSCSSSCCCCS
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCC---CCC-cCCC---CccchhCCHHHHHHHH-HHhCCCCCeECCCcCCccc
Confidence            456789999999999999999999999986   455 9999   9999999999999998 7899999999999999999


Q ss_pred             ChhhHHHHHHHhcCCCCccC
Q psy6628          87 SKYDHKIHSRVHTGEKPYAC  106 (132)
Q Consensus        87 ~~~~l~~h~~~h~~~~~~~C  106 (132)
                      ....|..|+.+|.++++|..
T Consensus        85 ~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           85 QSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             SHHHHHHHHHHTTSCCCCCC
T ss_pred             CHHHHHHHHHHhCCCCCCcC
Confidence            99999999999999999864

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.86  E-value=4.9e-22  Score=105.08  Aligned_cols=81  Identities=38%  Similarity=0.778  Sum_probs=66.8

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHH
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHR  123 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  123 (132)
                      |.|+   .|++.|.....|..|+ ..|.++++|.|..|++.|.....|..|+..|.++++|.|++|++.|...+.|..|+
T Consensus         2 ~~C~---~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   77 (82)
T 2kmk_A            2 FDCK---ICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHS   77 (82)
T ss_dssp             EECS---SSCCEESSHHHHHHHH-HHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHH
T ss_pred             ccCC---CCcccccCchhHHHHH-HHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHH
Confidence            6677   7888888888888887 56777788888888888888888888888888888888888888888888888888


Q ss_pred             Hhhhh
Q psy6628         124 RSLHQ  128 (132)
Q Consensus       124 ~~~~~  128 (132)
                      +.|+|
T Consensus        78 ~~H~g   82 (82)
T 2kmk_A           78 RKHTG   82 (82)
T ss_dssp             HHHC-
T ss_pred             HhhCC
Confidence            88764

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.86  E-value=3.2e-22  Score=99.36  Aligned_cols=58  Identities=29%  Similarity=0.583  Sum_probs=54.8

Q ss_pred             CCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhc
Q psy6628          73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus        73 ~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      +|||.|..|++.|...+.|..|+.+|++++||.|.+|++.|...++|..|+++|.|++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            6899999999999999999999999999999999999999999999999999988765

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.85  E-value=5e-21  Score=103.86  Aligned_cols=81  Identities=37%  Similarity=0.714  Sum_probs=64.5

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCC--CCccCCCchhccccchHHHH
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGE--KPYACEFCPLTFRHSSHLFR  121 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~--~~~~C~~C~~~f~~~~~l~~  121 (132)
                      |.|+   .|++.|.....|..|+ ..|.++++|.|..|++.|.....|..|+..|.++  ++|.|++|++.|...+.|..
T Consensus         8 ~~C~---~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~   83 (95)
T 2yt9_A            8 VACE---ICGKIFRDVYHLNRHK-LSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNG   83 (95)
T ss_dssp             EECS---SSCCEESSSHHHHHHH-HHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHH
T ss_pred             eECC---CCCCccCChHHHHHHH-HhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHH
Confidence            7777   7778888777788887 5677777888888888888888888888888776  88888888888888888888


Q ss_pred             HHHhhhh
Q psy6628         122 HRRSLHQ  128 (132)
Q Consensus       122 H~~~~~~  128 (132)
                      |++..|.
T Consensus        84 H~~~~H~   90 (95)
T 2yt9_A           84 HIKQVHS   90 (95)
T ss_dssp             HHHHTSC
T ss_pred             HHHHhcC
Confidence            8864443

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.85  E-value=3e-21  Score=108.71  Aligned_cols=88  Identities=38%  Similarity=0.731  Sum_probs=82.3

Q ss_pred             CCCccccCCCCC--CcccccChHHHHhhhhhccCCCCCccCC--cccccccChhhHHHHHHHhcCCCCccCCCchhcccc
Q psy6628          40 ERPRFKCEGRGE--CDRVFTTRNMLNIHIKRDHQKEKPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRH  115 (132)
Q Consensus        40 ~~~~~~c~~~~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~--~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~  115 (132)
                      +.+ |.|.   .  |++.|.....|..|+ ..|.++++|.|.  .|++.|.....|..|+..|.++++|.|++|++.|..
T Consensus         4 ~~~-~~C~---~~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   78 (119)
T 2jp9_A            4 KRP-FMCA---YPGCNKRYFKLSHLQMHS-RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSR   78 (119)
T ss_dssp             SCC-BCCC---STTSCCCBSCHHHHHHHH-HHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESC
T ss_pred             Cee-eeCC---CCCCcchhCCHHHHHHHH-HhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCC
Confidence            344 9997   6  999999999999998 679999999999  799999999999999999999999999999999999


Q ss_pred             chHHHHHHHhhhhhccC
Q psy6628         116 SSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus       116 ~~~l~~H~~~~~~~~~~  132 (132)
                      .+.|..|++.|++++||
T Consensus        79 ~~~l~~H~~~h~~~~~~   95 (119)
T 2jp9_A           79 SDHLKTHTRTHTGEKPF   95 (119)
T ss_dssp             HHHHHHHHHHHHTCCCE
T ss_pred             HHHHHHHHHHhcCCCCe
Confidence            99999999999998875

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.84  E-value=6.6e-21  Score=103.57  Aligned_cols=91  Identities=33%  Similarity=0.649  Sum_probs=83.2

Q ss_pred             cccceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccc
Q psy6628           6 NIHRVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSF   85 (132)
Q Consensus         6 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~   85 (132)
                      ..++++|.|++|++.|.....|..|++.|.+   +.+ |.|+   .|++.|.....|..|+ ..|.++++|.|..|++.|
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~-~~C~---~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f   74 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTG---VKP-YKCK---TCDYAAADSSSLNKHL-RIHSDERPFKCQICPYAS   74 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCC---CCS-EECS---SSCCEESSHHHHHHHH-HHSCCCCCEECSSSSCEE
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCC---CCC-EeCC---CCCCccCCHHHHHHHH-HHhCCCCCccCCCCCCcc
Confidence            3567899999999999999999999999876   455 9999   9999999999999998 779999999999999999


Q ss_pred             cChhhHHHHHHHhcCCCCc
Q psy6628          86 FSKYDHKIHSRVHTGEKPY  104 (132)
Q Consensus        86 ~~~~~l~~h~~~h~~~~~~  104 (132)
                      .....|..|+++|+++++.
T Consensus        75 ~~~~~l~~H~~~h~~~~~p   93 (96)
T 2dmd_A           75 RNSSQLTVHLRSHTGDSGP   93 (96)
T ss_dssp             SSHHHHHHHHTTCCSCCCC
T ss_pred             CCHHHHHHHHHHhcCCCCC
Confidence            9999999999999988654

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=8.9e-23  Score=114.50  Aligned_cols=81  Identities=19%  Similarity=0.372  Sum_probs=41.7

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhc--cCCCCCc-cCCcccccc--cChhhHHHHHHHhcCCCCccCCCchhccccchH
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRD--HQKEKPY-QCSQCSKSF--FSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSH  118 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~--~~~~~~~-~c~~C~~~~--~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~  118 (132)
                      |.|+   .|++.|.....|..|+ ..  +.+.+++ .|..|++.|  .....|..|+.+|.+++||.|++|++.|...+.
T Consensus        20 ~~C~---~C~k~f~~~~~L~~H~-~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~   95 (115)
T 2dmi_A           20 FRCK---DCSAAYDTLVELTVHM-NETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQD   95 (115)
T ss_dssp             EEBS---SSSCEESSHHHHHHHH-HHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHH
T ss_pred             EECC---ccCchhcCHHHHHHHH-HHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCCCCCccCCHHH
Confidence            5555   4555555555555554 23  3333332 255555555  455555555555555555555555555555555


Q ss_pred             HHHHHHhhhh
Q psy6628         119 LFRHRRSLHQ  128 (132)
Q Consensus       119 l~~H~~~~~~  128 (132)
                      |..|++.++.
T Consensus        96 L~~H~~~hh~  105 (115)
T 2dmi_A           96 LSVHMIKTKH  105 (115)
T ss_dssp             HHHHHHHTTT
T ss_pred             HHHHHHHhCC
Confidence            5555555443

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.84  E-value=9.9e-21  Score=101.69  Aligned_cols=87  Identities=33%  Similarity=0.761  Sum_probs=78.0

Q ss_pred             cceeeeCC--CCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccc
Q psy6628           8 HRVVFTCQ--VCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSF   85 (132)
Q Consensus         8 ~~~~~~C~--~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~   85 (132)
                      ++++|.|+  .|++.|.....|..|+++|.+   +.+ |.|+   .|++.|.....|..|+ ..|.++++|.|..|++.|
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~~-~~C~---~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f   72 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTG---QKP-FQCR---ICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKF   72 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHC---CCC-EECT---TTCCEESCHHHHHHHH-HHHHCCCCEECTTTCCEE
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCC---CCC-ccCC---CCCcccCCHHHHHHHH-HHcCCCCCccCCCCCchh
Confidence            36789998  599999999999999999987   455 9999   9999999999999998 679999999999999999


Q ss_pred             cChhhHHHHHHHhcCCC
Q psy6628          86 FSKYDHKIHSRVHTGEK  102 (132)
Q Consensus        86 ~~~~~l~~h~~~h~~~~  102 (132)
                      .....|..|+.+|.+++
T Consensus        73 ~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           73 ARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             SSHHHHHHHHGGGGC--
T ss_pred             CCHHHHHHHHHHhcccC
Confidence            99999999999999875

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=1e-20  Score=107.19  Aligned_cols=88  Identities=28%  Similarity=0.584  Sum_probs=81.7

Q ss_pred             CCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHH---hcCCCCccCCCchhccccc
Q psy6628          40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRV---HTGEKPYACEFCPLTFRHS  116 (132)
Q Consensus        40 ~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~---h~~~~~~~C~~C~~~f~~~  116 (132)
                      +.+ |.|+   .|++.|.....|..|+ ..|.++++|.|..|++.|.....|..|+..   +.++++|.|++|++.|...
T Consensus         5 ~~~-~~C~---~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~   79 (124)
T 2dlq_A            5 SSG-VECP---TCHKKFLSKYYLKVHN-RKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRR   79 (124)
T ss_dssp             CSS-CCCT---TTCCCCSSHHHHHHHH-HHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSH
T ss_pred             CCC-CCCC---CCCCcCCCHHHHHHHH-HhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCH
Confidence            444 9999   9999999999999998 779999999999999999999999999985   5788999999999999999


Q ss_pred             hHHHHHHHhhhhhccC
Q psy6628         117 SHLFRHRRSLHQMYEQ  132 (132)
Q Consensus       117 ~~l~~H~~~~~~~~~~  132 (132)
                      ..|..|++.|++++||
T Consensus        80 ~~l~~H~~~h~~~~~~   95 (124)
T 2dlq_A           80 MELRLHMVSHTGEMPY   95 (124)
T ss_dssp             HHHHHHHHHHSSSCSE
T ss_pred             HHHHHHHHHcCCCCCc
Confidence            9999999999998875

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=1.4e-20  Score=104.23  Aligned_cols=91  Identities=20%  Similarity=0.321  Sum_probs=73.1

Q ss_pred             cccceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccc
Q psy6628           6 NIHRVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSF   85 (132)
Q Consensus         6 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~   85 (132)
                      +.++++|.|.+|++.|.....|..|+++|..     + |.|+   .|++.|.....|..|+ . |.++++|.|..|++.|
T Consensus        11 h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~-----~-~~C~---~C~~~f~~~~~l~~H~-~-H~~~~~~~C~~C~~~f   79 (107)
T 1wjp_A           11 VENKEVYQCRLCNAKLSSLLEQGSHERLCRN-----A-AVCP---YCSLRFFSPELKQEHE-S-KCEYKKLTCLECMRTF   79 (107)
T ss_dssp             CCCCCCCBCTTTCCBCSSHHHHHHHHHHHHH-----S-BCCT---TTCCCBSSHHHHHHHH-H-HCSTGGGEEGGGTEEC
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHCCC-----C-ccCC---CCCCccCCHHHHHHHH-H-cCCCCCccCccccchh
Confidence            4567788888888888888888888888742     3 8888   7888888888888887 5 8888888888888888


Q ss_pred             cChhhHHHHHH-HhcCCCCccCC
Q psy6628          86 FSKYDHKIHSR-VHTGEKPYACE  107 (132)
Q Consensus        86 ~~~~~l~~h~~-~h~~~~~~~C~  107 (132)
                      .....|..|+. .|.++++|.+.
T Consensus        80 ~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           80 KSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             SSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             CCHHHHHHHHHHHcCCCCCCCCC
Confidence            88888888886 78888888764

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=1.7e-21  Score=107.93  Aligned_cols=85  Identities=24%  Similarity=0.364  Sum_probs=77.3

Q ss_pred             CCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHH
Q psy6628          40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHL  119 (132)
Q Consensus        40 ~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l  119 (132)
                      +.+ |.|+   .|++.|.....|..|+ ..|  .++|.|..|++.|.....|..|+. |.+++||.|.+|++.|...+.|
T Consensus        14 ~~~-~~C~---~C~~~f~~~~~l~~H~-~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L   85 (107)
T 1wjp_A           14 KEV-YQCR---LCNAKLSSLLEQGSHE-RLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSI   85 (107)
T ss_dssp             CCC-CBCT---TTCCBCSSHHHHHHHH-HHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHH
T ss_pred             CcC-eECC---CCCCccCCHHHHHHHH-HHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHH
Confidence            444 9999   9999999999999998 556  468999999999999999999996 9999999999999999999999


Q ss_pred             HHHHH-hhhhhccC
Q psy6628         120 FRHRR-SLHQMYEQ  132 (132)
Q Consensus       120 ~~H~~-~~~~~~~~  132 (132)
                      ..|++ .|.+++||
T Consensus        86 ~~H~~~~H~~~~~~   99 (107)
T 1wjp_A           86 WRHQVEVHNQNNMA   99 (107)
T ss_dssp             HHHHHHTSCCCCCC
T ss_pred             HHHHHHHcCCCCCC
Confidence            99997 77777775

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.82  E-value=3e-20  Score=98.12  Aligned_cols=82  Identities=33%  Similarity=0.679  Sum_probs=75.9

Q ss_pred             eeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhh
Q psy6628          11 VFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYD   90 (132)
Q Consensus        11 ~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~   90 (132)
                      +|.|+.|++.|.....|..|+++|.+   +.+ |.|+   .|++.|.....|..|+ ..|.++++|.|..|++.|.....
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~-~~C~---~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~   72 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSD---TRP-YPCQ---YCGKRFHQKSDMKKHT-FIHTGEKPHKCQVCGKAFSQSSN   72 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHT---CCC-EECS---SSCCEESSHHHHHHHH-HHHHTCCCEECTTTSCEESSHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCC---CCC-eeCC---cCChhhCCHHHHHHHH-HHhcCCCCCcCCCcchhhCChHH
Confidence            58999999999999999999999987   555 9999   9999999999999998 77999999999999999999999


Q ss_pred             HHHHHHHhcC
Q psy6628          91 HKIHSRVHTG  100 (132)
Q Consensus        91 l~~h~~~h~~  100 (132)
                      |..|++.|+|
T Consensus        73 l~~H~~~H~g   82 (82)
T 2kmk_A           73 LITHSRKHTG   82 (82)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHhhCC
Confidence            9999999864

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.81  E-value=3.2e-20  Score=109.05  Aligned_cols=88  Identities=35%  Similarity=0.668  Sum_probs=82.8

Q ss_pred             eeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCC--CcccccChHHHHhhhhhccCCCCCccCCc--ccccccC
Q psy6628          12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGE--CDRVFTTRNMLNIHIKRDHQKEKPYQCSQ--CSKSFFS   87 (132)
Q Consensus        12 ~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~~--C~~~~~~   87 (132)
                      |.|+.|++.|.....|..|+++|.+   +.+ |.|.   .  |++.|.....|..|+ ..|.++++|.|..  |++.|..
T Consensus        63 ~~C~~C~~~f~~~~~l~~H~~~h~~---~~~-~~C~---~~~C~~~f~~~~~L~~H~-~~h~~~~~~~C~~~~C~k~f~~  134 (155)
T 2rpc_A           63 EECPREGKSFKAKYKLVNHIRVHTG---EKP-FPCP---FPGCGKIFARSENLKIHK-RTHTGEKPFKCEFEGCDRRFAN  134 (155)
T ss_dssp             TTCTTSSCCCSSHHHHHHHTHHHHC---CCS-EECS---CTTTCCEESCHHHHHHHH-TTTCSSCSBCCSSTTCCCCBSS
T ss_pred             cCCCCcccccCCHHHHHHHHHhcCC---CCc-ccCC---cCCCCCccCCHHHHHHHH-HhhCCCCCccCCCCCCCCccCC
Confidence            8899999999999999999999987   555 9998   7  999999999999998 7899999999997  9999999


Q ss_pred             hhhHHHHHHHhcCCCCccCC
Q psy6628          88 KYDHKIHSRVHTGEKPYACE  107 (132)
Q Consensus        88 ~~~l~~h~~~h~~~~~~~C~  107 (132)
                      ...|..|+++|++++||.|.
T Consensus       135 ~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A          135 SSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             HHHHHHSSTTTTSCCCSCSC
T ss_pred             HHHHHHHHHHhcCCCCCCCC
Confidence            99999999999999999985

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.81  E-value=5.6e-20  Score=102.28  Aligned_cols=84  Identities=26%  Similarity=0.577  Sum_probs=48.1

Q ss_pred             cccceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccc
Q psy6628           6 NIHRVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSF   85 (132)
Q Consensus         6 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~   85 (132)
                      +.++++|.| .|++.|.....|..|++.|.+   +.+ |.|+   .|++.|.....|..|+ ..|.++++|.|..|++.|
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~---~~~-~~C~---~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f   75 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLG---LRP-YGCG---VCGKKFKMKHHLVGHM-KIHTGIKPYECNICAKRF   75 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHHHSC---CCS-EECT---TTSCEESSSHHHHHHH-TTTCCCCCEECSSSCCEE
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHHcCC---CcC-ccCC---CCCcccCCHHHHHHHH-HHcCCCCCeeCCCCcchh
Confidence            345566666 666666666666666666554   333 5665   5666666655566565 445555555555555555


Q ss_pred             cChhhHHHHHHHh
Q psy6628          86 FSKYDHKIHSRVH   98 (132)
Q Consensus        86 ~~~~~l~~h~~~h   98 (132)
                      .....|..|+..|
T Consensus        76 ~~~~~l~~H~~~~   88 (110)
T 2csh_A           76 MWRDSFHRHVTSC   88 (110)
T ss_dssp             SCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHc
Confidence            5555555555444

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.80  E-value=9e-20  Score=97.70  Aligned_cols=79  Identities=34%  Similarity=0.742  Sum_probs=70.5

Q ss_pred             cccCCCCC--CcccccChHHHHhhhhhccCCCCCccCC--cccccccChhhHHHHHHHhcCCCCccCCCchhccccchHH
Q psy6628          44 FKCEGRGE--CDRVFTTRNMLNIHIKRDHQKEKPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHL  119 (132)
Q Consensus        44 ~~c~~~~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~--~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l  119 (132)
                      |.|+   .  |++.|.....|..|+ ..|.++++|.|.  .|++.|.....|..|+..|.++++|.|++|++.|...+.|
T Consensus         6 ~~C~---~~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   81 (89)
T 2wbs_A            6 HTCD---YAGCGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL   81 (89)
T ss_dssp             EECC---STTTCCEESSHHHHHHHH-TTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHH
T ss_pred             eeCC---CCCCCCcCCCHHHHHHHH-HhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHH
Confidence            8887   6  889999888899998 678888899997  5999999999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q psy6628         120 FRHRRSL  126 (132)
Q Consensus       120 ~~H~~~~  126 (132)
                      ..|++.|
T Consensus        82 ~~H~~~H   88 (89)
T 2wbs_A           82 ALHMKRH   88 (89)
T ss_dssp             HHHGGGG
T ss_pred             HHHHHhh
Confidence            9998876

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=1.8e-19  Score=97.69  Aligned_cols=88  Identities=31%  Similarity=0.664  Sum_probs=78.8

Q ss_pred             cccceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCC--CCccCCcccc
Q psy6628           6 NIHRVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKE--KPYQCSQCSK   83 (132)
Q Consensus         6 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~--~~~~c~~C~~   83 (132)
                      ..++++|.|++|++.|.....|..|+++|.+   +.+ |.|+   .|++.|.....|..|+ ..|.+.  ++|.|..|++
T Consensus         2 s~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~-~~C~---~C~~~f~~~~~l~~H~-~~h~~~~~~~~~C~~C~~   73 (95)
T 2yt9_A            2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSG---EKP-YSCP---VCGLRFKRKDRMSYHV-RSHDGSVGKPYICQSCGK   73 (95)
T ss_dssp             CCCCSCEECSSSCCEESSSHHHHHHHHHSCS---SCS-EECS---SSCCEESCHHHHHHHH-HHHCCCCCSSBCCSSSCC
T ss_pred             CCCCCCeECCCCCCccCChHHHHHHHHhcCC---CCC-CcCC---CCCCccCCHHHHHHHH-HHhcCCCCCceECCCccc
Confidence            3578899999999999999999999999876   455 9999   9999999999999998 678776  8999999999


Q ss_pred             cccChhhHHHHHH-HhcCC
Q psy6628          84 SFFSKYDHKIHSR-VHTGE  101 (132)
Q Consensus        84 ~~~~~~~l~~h~~-~h~~~  101 (132)
                      .|.....|..|+. .|.++
T Consensus        74 ~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           74 GFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             CBSSHHHHHHHHHHTSCCC
T ss_pred             hhCCHHHHHHHHHHhcCCC
Confidence            9999999999986 67654

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.80  E-value=1.6e-19  Score=98.66  Aligned_cols=81  Identities=36%  Similarity=0.748  Sum_probs=68.7

Q ss_pred             cccCCCCC--CcccccChHHHHhhhhhccCCCCCccCC--cccccccChhhHHHHHHHhcCCCCccCCCchhccccchHH
Q psy6628          44 FKCEGRGE--CDRVFTTRNMLNIHIKRDHQKEKPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHL  119 (132)
Q Consensus        44 ~~c~~~~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~--~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l  119 (132)
                      |.|.   .  |++.|.....|..|+ ..|.++++|.|.  .|++.|.....|..|+..|.++++|.|.+|++.|...+.|
T Consensus        16 ~~C~---~~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   91 (100)
T 2ebt_A           16 HYCD---YPGCTKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL   91 (100)
T ss_dssp             EECC---SSSCCCEESCHHHHHHHH-HHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHH
T ss_pred             eEcC---CCCCCCcccCHHHHHHHH-HHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHH
Confidence            7776   4  888888888888887 668888888885  5888888888899999888888999999999999999999


Q ss_pred             HHHHHhhhh
Q psy6628         120 FRHRRSLHQ  128 (132)
Q Consensus       120 ~~H~~~~~~  128 (132)
                      ..|++.|.+
T Consensus        92 ~~H~~~H~~  100 (100)
T 2ebt_A           92 ALHMKRHQN  100 (100)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhCC
Confidence            999888753

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.80  E-value=1.1e-19  Score=101.89  Aligned_cols=96  Identities=16%  Similarity=0.182  Sum_probs=81.6

Q ss_pred             ccccceeeeCCCCccccCChhHHHHHHHh--hcCCCCCCCccccCCCCCCcccc--cChHHHHhhhhhccCCCCCccCCc
Q psy6628           5 HNIHRVVFTCQVCSKIFSYENGLKAHVRN--KHGSSEERPRFKCEGRGECDRVF--TTRNMLNIHIKRDHQKEKPYQCSQ   80 (132)
Q Consensus         5 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~~--~~~~~~~~~~~~c~~~~~c~~~~--~~~~~l~~h~~~~~~~~~~~~c~~   80 (132)
                      .+.++++|.|++|++.|.....|..|++.  +.+   ..+.+.|+   .|++.|  .....|..|+ ..|.++++|.|..
T Consensus        13 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~---~~~~~~C~---~C~~~f~f~~~~~l~~H~-~~H~~~~~~~C~~   85 (115)
T 2dmi_A           13 IFTGASKFRCKDCSAAYDTLVELTVHMNETGHYR---DDNHETDN---NNPKRWSKPRKRSLLEME-GKEDAQKVLKCMY   85 (115)
T ss_dssp             CCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCB---CSCCCCCC---CCCSCCSSCCCCCCCCCC-CSCCCCSSCBCSS
T ss_pred             eeCCCCCEECCccCchhcCHHHHHHHHHHhCccc---cCCCccCC---CCCcccccccHHHHHHHh-hccCCCcceECCC
Confidence            35678899999999999999999999998  432   44435688   899988  8888899998 7899999999999


Q ss_pred             ccccccChhhHHHHHHHhcCCCCccCC
Q psy6628          81 CSKSFFSKYDHKIHSRVHTGEKPYACE  107 (132)
Q Consensus        81 C~~~~~~~~~l~~h~~~h~~~~~~~C~  107 (132)
                      |++.|.....|..|+..+........+
T Consensus        86 C~k~f~~~~~L~~H~~~hh~~~~~~~~  112 (115)
T 2dmi_A           86 CGHSFESLQDLSVHMIKTKHYQKVSGP  112 (115)
T ss_dssp             SCCBCSSHHHHHHHHHHTTTTTCSCCC
T ss_pred             CCCccCCHHHHHHHHHHhCCcccCCCC
Confidence            999999999999999998766555443

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.79  E-value=3.3e-19  Score=99.10  Aligned_cols=84  Identities=31%  Similarity=0.664  Sum_probs=78.3

Q ss_pred             CCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHH
Q psy6628          40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHL  119 (132)
Q Consensus        40 ~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l  119 (132)
                      +.+ |.|    .|++.|.....|..|+ ..|.++++|.|..|++.|.....|..|+..|.++++|.|++|++.|...+.|
T Consensus         8 ~k~-~~C----~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   81 (110)
T 2csh_A            8 DKL-YPC----QCGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF   81 (110)
T ss_dssp             CCC-EEC----TTSCEESSHHHHHHHH-HHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHH
T ss_pred             CCC-Eec----cCCCccCCHHHHHHHH-HHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHH
Confidence            444 888    3999999999999999 6799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhh
Q psy6628         120 FRHRRSLHQM  129 (132)
Q Consensus       120 ~~H~~~~~~~  129 (132)
                      ..|++.+++.
T Consensus        82 ~~H~~~~~~~   91 (110)
T 2csh_A           82 HRHVTSCTKS   91 (110)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHcccc
Confidence            9999998764

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.79  E-value=1.6e-19  Score=102.39  Aligned_cols=90  Identities=32%  Similarity=0.596  Sum_probs=77.6

Q ss_pred             cceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCC--CcccccChHHHHhhhhhccCCCCCccCC--cccc
Q psy6628           8 HRVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGE--CDRVFTTRNMLNIHIKRDHQKEKPYQCS--QCSK   83 (132)
Q Consensus         8 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~--~C~~   83 (132)
                      +.++|.|+.|++.|.....|..|+.+|.+   +.+ |.|+   .  |++.|.....|..|+ ..|.++++|.|.  .|++
T Consensus        31 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~-~~C~---~~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~~~C~~  102 (124)
T 1ubd_C           31 GPRVHVCAECGKAFVESSKLKRHQLVHTG---EKP-FQCT---FEGCGKRFSLDFNLRTHV-RIHTGDRPYVCPFDGCNK  102 (124)
T ss_dssp             SCCCEECTTTCCEESSHHHHHHHGGGTSC---CCC-EECC---STTCCCEESCHHHHHHHH-HHHHCCCCCCCCSTTCCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHHcCC---CCC-eeCC---CCCCcCccCCHHHHHHHH-HHhCCCCceECCCCCCCC
Confidence            67889999999999999999999999876   555 9997   5  999999999999998 789999999995  5999


Q ss_pred             cccChhhHHHHHHHhcCCCCcc
Q psy6628          84 SFFSKYDHKIHSRVHTGEKPYA  105 (132)
Q Consensus        84 ~~~~~~~l~~h~~~h~~~~~~~  105 (132)
                      .|.....|..|+.+|+++++++
T Consensus       103 ~f~~~~~L~~H~~~H~~~k~~q  124 (124)
T 1ubd_C          103 KFAQSTNLKSHILTHAKAKNNQ  124 (124)
T ss_dssp             CCSSTTTTHHHHHHHC------
T ss_pred             ccCCHHHHHHHHHHHcccccCC
Confidence            9999999999999999988763

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.79  E-value=1.7e-19  Score=93.58  Aligned_cols=65  Identities=35%  Similarity=0.647  Sum_probs=61.1

Q ss_pred             hccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        68 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      ..+.++++|.|..|++.|.....|..|+..|.++++|.|.+|++.|...+.|..|++.|++++||
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            34677899999999999999999999999999999999999999999999999999999999997

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=4.8e-20  Score=100.62  Aligned_cols=75  Identities=16%  Similarity=0.209  Sum_probs=66.0

Q ss_pred             cChHHHHhhhhhccCCCCCccCCccccccc-ChhhHHHHHHHhcC-CCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          57 TTRNMLNIHIKRDHQKEKPYQCSQCSKSFF-SKYDHKIHSRVHTG-EKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        57 ~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~-~~~~l~~h~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .....+..|+ ..|.++++|.|..|++.|. ....|..|+..|.+ +++|.|.+|++.|...+.|..|++.|++++|.
T Consensus         7 ~~~~~~~~h~-~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~   83 (98)
T 2gqj_A            7 GPGGPEEQWQ-RAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPS   83 (98)
T ss_dssp             CCCCSCSHHH-HTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSS
T ss_pred             CCCCcHHHHH-HHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCC
Confidence            3334466777 6789999999999999999 99999999999998 89999999999999999999999999998873

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.77  E-value=4.7e-19  Score=90.92  Aligned_cols=64  Identities=30%  Similarity=0.656  Sum_probs=59.6

Q ss_pred             ccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          69 DHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        69 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .+.++++|.|..|++.|.....|..|+..|.++++|.|.+|++.|...+.|..|++.|++++|.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            3677899999999999999999999999999999999999999999999999999999998874

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.76  E-value=4.5e-18  Score=92.90  Aligned_cols=87  Identities=34%  Similarity=0.749  Sum_probs=77.2

Q ss_pred             cceeeeCCC--CccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccc
Q psy6628           8 HRVVFTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSF   85 (132)
Q Consensus         8 ~~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~   85 (132)
                      ..++|.|..  |++.|.....|..|++.|.+   +.+ |.|+.. .|++.|.....|..|+ ..|.++++|.|..|++.|
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~~-~~C~~~-~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f   85 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTG---EKP-YKCTWE-GCDWRFARSDELTRHY-RKHTGAKPFQCGVCNRSF   85 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSC---CCC-EECCSS-SCCCEESSHHHHHHHH-HHHTSCCSCBCSSSCCBC
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCC---CCC-eeCCCC-CCCCccCCHHHHHHHH-HHhCCCCCeECCCCcCcc
Confidence            456799997  99999999999999999876   445 999511 4999999999999998 789999999999999999


Q ss_pred             cChhhHHHHHHHhcC
Q psy6628          86 FSKYDHKIHSRVHTG  100 (132)
Q Consensus        86 ~~~~~l~~h~~~h~~  100 (132)
                      .....|..|++.|.+
T Consensus        86 ~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           86 SRSDHLALHMKRHQN  100 (100)
T ss_dssp             SSHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHhCC
Confidence            999999999999863

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.76  E-value=9e-20  Score=97.64  Aligned_cols=81  Identities=27%  Similarity=0.519  Sum_probs=68.2

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHH
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHR  123 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  123 (132)
                      |.|+   .|++.|.....|..|+ ..|.++++|.|..|++.|.....|..|+..+++ .+|.|..|++.|...+.|..|+
T Consensus         4 ~~C~---~C~k~f~~~~~L~~H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~   78 (88)
T 1llm_C            4 FQCR---ICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEV   78 (88)
T ss_dssp             EECT---TTCCEESCHHHHHHHH-HHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCC---CCCCccCCHHHHHHHH-HHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHH
Confidence            7787   7888888888888887 568888888888888888888888888888774 7899999999999999999999


Q ss_pred             Hhhhhh
Q psy6628         124 RSLHQM  129 (132)
Q Consensus       124 ~~~~~~  129 (132)
                      +.+|+.
T Consensus        79 ~~~h~~   84 (88)
T 1llm_C           79 ARLKKL   84 (88)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887764

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=7.9e-19  Score=91.68  Aligned_cols=64  Identities=38%  Similarity=0.706  Sum_probs=55.3

Q ss_pred             ccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          69 DHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        69 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .+.++++|.|..|++.|.....|..|+..|.++++|.|++|++.|...+.|..|+++|++++||
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~   75 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS   75 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            3556788889889999988888889988888888899999999999888999998888888886

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.75  E-value=1.7e-18  Score=91.87  Aligned_cols=77  Identities=31%  Similarity=0.725  Sum_probs=63.1

Q ss_pred             ccc--CCCCCCcccccChHHHHhhhhhccCCCCCccCCc--ccccccChhhHHHHHHHhcCCCCccCCC---chhccccc
Q psy6628          44 FKC--EGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ--CSKSFFSKYDHKIHSRVHTGEKPYACEF---CPLTFRHS  116 (132)
Q Consensus        44 ~~c--~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~--C~~~~~~~~~l~~h~~~h~~~~~~~C~~---C~~~f~~~  116 (132)
                      |.|  +   .|++.|.....|..|+ ..|.++++|.|..  |++.|.....|..|+..|.+   |.|.+   |++.|...
T Consensus         2 ~~C~~~---~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~   74 (85)
T 2j7j_A            2 YVCHFE---NCGKAFKKHNQLKVHQ-FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTW   74 (85)
T ss_dssp             EECCST---TCCCEESSHHHHHHHH-HHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSH
T ss_pred             ccCCCC---CCCcccCCHHHHHHHH-HHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCH
Confidence            667  6   6888888888888887 6677788888877  88888888888888888877   88888   88888888


Q ss_pred             hHHHHHHHhhh
Q psy6628         117 SHLFRHRRSLH  127 (132)
Q Consensus       117 ~~l~~H~~~~~  127 (132)
                      +.|..|++.||
T Consensus        75 ~~l~~H~~~hh   85 (85)
T 2j7j_A           75 TLYLKHVAECH   85 (85)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhcC
Confidence            88888888764

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=4.2e-18  Score=89.24  Aligned_cols=70  Identities=34%  Similarity=0.680  Sum_probs=57.7

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCCCCCccCCc--ccccccChhhHHHHHHHhcCCCCccCCCchhccc
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ--CSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFR  114 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~--C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~  114 (132)
                      |.|... .|++.|.....|..|++..|.++++|.|..  |++.|.....|..|+.+|.+++||.|.+|++.|.
T Consensus         8 ~~C~~~-~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            8 MPCDFP-GCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             EECSST-TTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             ccCCCC-CCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            777611 288888888888888733688888888988  9999999999999999998899999999998874

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.75  E-value=3.1e-18  Score=91.66  Aligned_cols=84  Identities=31%  Similarity=0.733  Sum_probs=75.2

Q ss_pred             ceeeeCCC--CccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCccccccc
Q psy6628           9 RVVFTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFF   86 (132)
Q Consensus         9 ~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~   86 (132)
                      ..+|.|+.  |++.|.....|..|++.|.+   +.+ |.|+.. .|++.|.....|..|+ ..|.++++|.|..|++.|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~~-~~C~~~-~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~   76 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTG---EKP-YHCDWD-GCGWKFARSDELTRHY-RKHTGHRPFQCQKCDRAFS   76 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCS---SCC-EECCST-TTCCEESSHHHHHHHH-HHHHCCCCEECSSSSCEES
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCC---CCC-cCCCCC-CCCCccCCHHHHHHHH-HHcCCCCCccCCCCCcccC
Confidence            46799999  99999999999999999876   445 999611 4999999999999998 7899999999999999999


Q ss_pred             ChhhHHHHHHHh
Q psy6628          87 SKYDHKIHSRVH   98 (132)
Q Consensus        87 ~~~~l~~h~~~h   98 (132)
                      ....|..|+..|
T Consensus        77 ~~~~l~~H~~~H   88 (89)
T 2wbs_A           77 RSDHLALHMKRH   88 (89)
T ss_dssp             SHHHHHHHGGGG
T ss_pred             CHHHHHHHHHhh
Confidence            999999999887

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.74  E-value=4.4e-18  Score=84.34  Aligned_cols=58  Identities=33%  Similarity=0.689  Sum_probs=40.3

Q ss_pred             cceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCC
Q psy6628           8 HRVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKE   73 (132)
Q Consensus         8 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~   73 (132)
                      |++||+|.+||+.|.....|..|+++|.+   +.+ |.|+   .|++.|.....|..|+ .+|+++
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~---ekp-~~C~---~C~k~F~~~~~L~~H~-~~Htge   58 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLG---YRP-RSCP---ECGKCFRDQSEVNRHL-KVHQNK   58 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHT---CCC-EECT---TTCCEESSHHHHHHHG-GGGSCC
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCC---CcC-eECC---CCCCCcCCHHHHHHHh-CccCCC
Confidence            45677777777777777777777777766   444 7777   6777777777777776 566664

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=3.3e-18  Score=88.21  Aligned_cols=63  Identities=41%  Similarity=0.656  Sum_probs=59.5

Q ss_pred             hccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhc
Q psy6628          68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus        68 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      .+|.++++|.|..|++.|.....|..|+..|.+++||.|++|++.|.....|..|++.|+++.
T Consensus         7 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            7 GIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             cccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            568899999999999999999999999999999999999999999999999999999988764

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=2.6e-18  Score=93.28  Aligned_cols=76  Identities=12%  Similarity=0.188  Sum_probs=63.7

Q ss_pred             ccccChHHHHhhhhhccCCCCCccCCcccccc-cChhhHHHHHHHhcCCCCccCCCchhccccchHHHHH-HHhhhhhcc
Q psy6628          54 RVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSF-FSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRH-RRSLHQMYE  131 (132)
Q Consensus        54 ~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~-~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~~~~~~~  131 (132)
                      ..|.....+..|. ..+.++++|.|..|++.| .....|..|+.+| +++||.|.+|++.|...+.|..| ++.| .++|
T Consensus        14 ~~~~~~~~~~~~~-~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H-~~~p   90 (96)
T 2ctd_A           14 PVYAAGSLEEQWY-LEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANH-NSLP   90 (96)
T ss_dssp             CSSCTTCHHHHHH-HHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHT-CCCS
T ss_pred             CCCCCchHHHHHH-HHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhc-CCCC
Confidence            3556666777787 667888999999999999 8999999999999 99999999999999999999999 6555 4455


Q ss_pred             C
Q psy6628         132 Q  132 (132)
Q Consensus       132 ~  132 (132)
                      |
T Consensus        91 ~   91 (96)
T 2ctd_A           91 S   91 (96)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.73  E-value=5.1e-18  Score=83.54  Aligned_cols=57  Identities=42%  Similarity=0.737  Sum_probs=50.6

Q ss_pred             CCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHhhhh
Q psy6628          72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus        72 ~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  128 (132)
                      ++++|.|..|++.|.....|..|+.+|.+++||.|++|++.|...+.|..|++.||+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            357899999999999999999999999999999999999999999999999999875

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.72  E-value=1.4e-19  Score=103.35  Aligned_cols=115  Identities=16%  Similarity=0.232  Sum_probs=84.5

Q ss_pred             ccccceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccc------cChHHHHhhhhhccCCCCCccC
Q psy6628           5 HNIHRVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVF------TTRNMLNIHIKRDHQKEKPYQC   78 (132)
Q Consensus         5 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~------~~~~~l~~h~~~~~~~~~~~~c   78 (132)
                      .+.+.++|.|...+....  ..+..+...+....... .+.|+   .|...|      .....|..|+  .|.++++|.|
T Consensus         6 ~~~~~k~~~~~~k~~~~~--~s~ee~~~~~~l~~~~~-~~~c~---~~~~~~~~~~~~~~~~~l~~h~--~h~~~~~~~C   77 (129)
T 2wbt_A            6 VDSGSKKYLSNHKGIFIH--VTLEELKRYHQLTPEQK-RLIRA---IVKTLIHNPQLLDESSYLYRLL--ASKAISQFVC   77 (129)
T ss_dssp             CCTTCCGGGGCSSCEEEE--CCHHHHHHHTTSCHHHH-HHHHH---HHHHHHHCGGGTTTHHHHHHHH--HHHHHCSEEC
T ss_pred             hcccccccccccCCeeee--ecHHhhhccccCChhhC-cccch---hhhcccCCCcccCCHHHHHHHH--HhCCCCCeEC
Confidence            456788898877654322  22333333322211111 25666   555544      4566677775  4888999999


Q ss_pred             CcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhh
Q psy6628          79 SQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQM  129 (132)
Q Consensus        79 ~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  129 (132)
                      ..|++.|.....|..|+.+|  ++||.|.+|++.|...+.|..|++.|++.
T Consensus        78 ~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           78 PLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             TTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            99999999999999999998  89999999999999999999999999875

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=3.8e-18  Score=90.71  Aligned_cols=78  Identities=27%  Similarity=0.593  Sum_probs=43.8

Q ss_pred             HHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCC---CCccCCcccccccChhhHHHHHHHhcCCCCcc
Q psy6628          29 AHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKE---KPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA  105 (132)
Q Consensus        29 ~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~---~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~  105 (132)
                      .|+++|.+   +.+ |.|.   .|++.|.....|..|++..+...   ++|.|..|++.|.....|..|+..|.+++++.
T Consensus         5 ~H~~~H~~---~k~-~~C~---~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~   77 (86)
T 1x6h_A            5 SSGRTHTG---EKP-YACS---HCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVE   77 (86)
T ss_dssp             CCSTTCCC---CCC-EECS---SSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCC
T ss_pred             cccceecC---CCC-CcCC---CCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcc
Confidence            34455443   333 6666   56666666666666652222222   45666666666666666666666666666666


Q ss_pred             CCCchhcc
Q psy6628         106 CEFCPLTF  113 (132)
Q Consensus       106 C~~C~~~f  113 (132)
                      |..|+..|
T Consensus        78 ~~~~~~~~   85 (86)
T 1x6h_A           78 GENSGPSS   85 (86)
T ss_dssp             CCCCCCCC
T ss_pred             cCCCCCCC
Confidence            66665543

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=5.6e-18  Score=88.41  Aligned_cols=68  Identities=29%  Similarity=0.460  Sum_probs=60.5

Q ss_pred             HHhhhhhccCCCCCccCCcccccccChhhHHHHHH-HhcCC-CCccCCCchhccccchHHHHHHHhhhhhc
Q psy6628          62 LNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSR-VHTGE-KPYACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus        62 l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~-~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      +..|+ ..|+++++|.|..|++.|.....|..|+. .|.++ ++|.|++|++.|...+.|..|++.+|+..
T Consensus         3 ~~~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   72 (77)
T 2ct1_A            3 SGSSG-RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS   72 (77)
T ss_dssp             CCCCC-CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCS
T ss_pred             CCccc-cccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            45677 77999999999999999999999999997 67664 89999999999999999999999877643

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=5.5e-18  Score=85.89  Aligned_cols=62  Identities=24%  Similarity=0.533  Sum_probs=57.1

Q ss_pred             hccCCCCCccCCcccccccChhhHHHHHHH-h-cCCCCccCCCchhccccchHHHHHHHhhhhh
Q psy6628          68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRV-H-TGEKPYACEFCPLTFRHSSHLFRHRRSLHQM  129 (132)
Q Consensus        68 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~-h-~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  129 (132)
                      ..|+++++|.|..|++.|.....|..|+.. | .+++||.|++|++.|...+.|..|++.+|+.
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~i   66 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI   66 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC-
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcCC
Confidence            468889999999999999999999999998 6 5899999999999999999999999999873

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=1.1e-17  Score=91.54  Aligned_cols=67  Identities=21%  Similarity=0.417  Sum_probs=50.0

Q ss_pred             CCCccccCCCCCCcccccChHHHHhhhhhcc---CCCCCccCCcccccccChhhHHHH-HHHhcCCCCccCCCch
Q psy6628          40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDH---QKEKPYQCSQCSKSFFSKYDHKIH-SRVHTGEKPYACEFCP  110 (132)
Q Consensus        40 ~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~---~~~~~~~c~~C~~~~~~~~~l~~h-~~~h~~~~~~~C~~C~  110 (132)
                      +.+ |.|+   .|++.|.....|..|++..|   .++++|.|..|++.|.....|..| +.+|++++||.|.++.
T Consensus        16 ekp-y~C~---~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           16 EGG-YECK---YCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CSS-EECS---SCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CcC-cCCC---CCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            444 7887   78888888888888873347   557778888888888888888888 6778888888877643

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.69  E-value=2.2e-17  Score=81.25  Aligned_cols=56  Identities=29%  Similarity=0.609  Sum_probs=51.9

Q ss_pred             CccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhc
Q psy6628          75 PYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus        75 ~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      ||.|..|++.|.....|..|+..|.+++||.|++|++.|...+.|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            58899999999999999999999999999999999999999999999999988765

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.69  E-value=2.4e-17  Score=87.22  Aligned_cols=62  Identities=27%  Similarity=0.455  Sum_probs=55.5

Q ss_pred             hccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHh-hhhh
Q psy6628          68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRS-LHQM  129 (132)
Q Consensus        68 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-~~~~  129 (132)
                      ..+...+++.|++|++.|.....|..|+.+|++++||.|.+|++.|...+.|..|++. |.+|
T Consensus        21 ~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           21 GLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             SSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            3456678899999999999999999999999999999999999999999999999864 5554

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=1e-16  Score=83.86  Aligned_cols=73  Identities=25%  Similarity=0.521  Sum_probs=64.8

Q ss_pred             cccceeeeCCC--CccccCChhHHHHHHH-hhcCCCCCCCccccCCCCC--CcccccChHHHHhhhhhccCCCCCccCCc
Q psy6628           6 NIHRVVFTCQV--CSKIFSYENGLKAHVR-NKHGSSEERPRFKCEGRGE--CDRVFTTRNMLNIHIKRDHQKEKPYQCSQ   80 (132)
Q Consensus         6 ~~~~~~~~C~~--C~~~f~~~~~l~~h~~-~~~~~~~~~~~~~c~~~~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   80 (132)
                      ..++++|.|..  |++.|.....|..|++ .|.+   +.+ |.|+   .  |++.|.....|..|+ ..|.++++|.|..
T Consensus         2 s~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~---~~~-~~C~---~~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~~   73 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIH---QKS-FSCP---EPACGKSFNFKKHLKEHM-KLHSDTRDYICEF   73 (79)
T ss_dssp             CSCCSSEECSSTTTCCEESSHHHHHHHHHHGGGS---CCC-EECS---CTTTCCEESSHHHHHHHH-HHHHTSCCCSCCS
T ss_pred             CCCCCCccCCCCCCcCccCCHHHHHHHHHHHhCC---CCC-eECC---CCCCcCccCCHHHHHHHH-HHhCCCCCeeCCC
Confidence            35677899987  9999999999999999 6776   455 9998   7  999999999999999 7899999999999


Q ss_pred             cccccc
Q psy6628          81 CSKSFF   86 (132)
Q Consensus        81 C~~~~~   86 (132)
                      |++.|.
T Consensus        74 C~k~F~   79 (79)
T 2dlk_A           74 SGPSSG   79 (79)
T ss_dssp             SSCCCC
T ss_pred             CCCCCC
Confidence            999873

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.67  E-value=1.1e-16  Score=84.72  Aligned_cols=78  Identities=27%  Similarity=0.491  Sum_probs=70.9

Q ss_pred             eeeC--CCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCC--CcccccChHHHHhhhhhccCCCCCccCCc---ccc
Q psy6628          11 VFTC--QVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGE--CDRVFTTRNMLNIHIKRDHQKEKPYQCSQ---CSK   83 (132)
Q Consensus        11 ~~~C--~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~~---C~~   83 (132)
                      +|.|  +.|++.|.....|..|+++|.+   +.+ |.|+   .  |++.|.....|..|+ ..|.+   |.|..   |++
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~~-~~C~---~~~C~~~f~~~~~l~~H~-~~h~~---~~C~~~~~C~~   69 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQ---QLP-YECP---HEGCDKRFSLPSRLKRHE-KVHAG---YPCKKDDSCSF   69 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHT---TCC-EECC---STTCCCEESSHHHHHHHH-HHHHS---EECCSCSSCCC
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCC---CCC-eeCC---CCCCcCccCCHHHHHHHH-HHhCC---CCCCCCCCCCC
Confidence            5899  9999999999999999999987   555 9998   7  999999999999998 67877   89999   999


Q ss_pred             cccChhhHHHHHHHhc
Q psy6628          84 SFFSKYDHKIHSRVHT   99 (132)
Q Consensus        84 ~~~~~~~l~~h~~~h~   99 (132)
                      .|.....|..|+..|+
T Consensus        70 ~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           70 VGKTWTLYLKHVAECH   85 (85)
T ss_dssp             EESSHHHHHHHHHHCC
T ss_pred             ccCCHHHHHHHHHhcC
Confidence            9999999999998763

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.67  E-value=1e-17  Score=89.55  Aligned_cols=82  Identities=23%  Similarity=0.462  Sum_probs=73.1

Q ss_pred             ceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccCh
Q psy6628           9 RVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSK   88 (132)
Q Consensus         9 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~   88 (132)
                      +++|.|++|++.|.....|..|+++|.+   +.+ |.|+   .|++.|.....|..|+ ..+.+ .++.|..|++.|...
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~---~~~-~~C~---~C~k~f~~~~~L~~H~-~~h~~-~~~~c~~C~~~f~~~   71 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTG---EKP-FACD---ICGRKFARSDERKRHR-DIQHI-LPILEDKVEELLSKN   71 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC---CCC-EECT---TTCCEESSHHHHHHHH-HHHTH-HHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCC---CCC-ccCC---CCCCccCCHHHHHHHH-HHhCC-CcchHHHHHHHHHHH
Confidence            4689999999999999999999999987   555 9999   9999999999999998 44553 789999999999999


Q ss_pred             hhHHHHHHHhc
Q psy6628          89 YDHKIHSRVHT   99 (132)
Q Consensus        89 ~~l~~h~~~h~   99 (132)
                      ..|..|+...+
T Consensus        72 ~~L~~H~~~~h   82 (88)
T 1llm_C           72 YHLENEVARLK   82 (88)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hhhHHHHHHHH
Confidence            99999997653

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=6.6e-17  Score=84.47  Aligned_cols=59  Identities=25%  Similarity=0.475  Sum_probs=53.4

Q ss_pred             cCCCCCccCCcccccccChhhHHHHHHHhcC---CCCccCCCchhccccchHHHHHHHhhhh
Q psy6628          70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTG---EKPYACEFCPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus        70 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~~~~  128 (132)
                      |+++++|.|..|++.|.....|..|+..|.+   +++|.|.+|++.|...+.|..|++.+|.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   63 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP   63 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTST
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCC
Confidence            6788999999999999999999999999985   8999999999999999999999965544

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=4.9e-17  Score=86.38  Aligned_cols=68  Identities=28%  Similarity=0.463  Sum_probs=37.7

Q ss_pred             HhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCC----CCccCCCchhccccchHHHHHHHhhhhhcc
Q psy6628          63 NIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGE----KPYACEFCPLTFRHSSHLFRHRRSLHQMYE  131 (132)
Q Consensus        63 ~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~----~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  131 (132)
                      ..|+ .+|.++++|.|..|++.|.....|..|+..++.+    ++|.|.+|++.|...+.|..|++.|+++++
T Consensus         4 ~~H~-~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~   75 (86)
T 1x6h_A            4 GSSG-RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG   75 (86)
T ss_dssp             TCCS-TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCS
T ss_pred             cccc-ceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCC
Confidence            3444 4455555555555555555555555555544433    455555555555555555555555555544

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=1.1e-16  Score=82.60  Aligned_cols=65  Identities=34%  Similarity=0.690  Sum_probs=58.3

Q ss_pred             HHhhhhhccCCCCCccCC--cccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHhh
Q psy6628          62 LNIHIKRDHQKEKPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSL  126 (132)
Q Consensus        62 l~~h~~~~~~~~~~~~c~--~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  126 (132)
                      +..+.+..+.++++|.|.  .|++.|.....|..|+..|.++++|.|++|++.|...+.|..|++.|
T Consensus         6 ~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G            6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             --CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             ccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            455556778899999997  59999999999999999999999999999999999999999999876

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=3.2e-16  Score=77.77  Aligned_cols=55  Identities=33%  Similarity=0.695  Sum_probs=48.9

Q ss_pred             CCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHH-hhhh
Q psy6628          74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR-SLHQ  128 (132)
Q Consensus        74 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~~~~  128 (132)
                      ++|.|..|++.|.....|..|+..|.+++||.|++|++.|...+.|..|++ .|.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            478999999999999999999999999999999999999999999999975 4444

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=1.1e-15  Score=79.59  Aligned_cols=59  Identities=41%  Similarity=0.840  Sum_probs=44.7

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccC
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC  106 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C  106 (132)
                      |.|+   .|++.|.....|..|+ ..|.++++|.|..|++.|.....|..|+.+|++++||.|
T Consensus        19 ~~C~---~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           19 YKCD---ECGKSFSHSSDLSKHR-RTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             SBCS---SSCCBCSCHHHHHHHH-TTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             EECC---CCCcccCCHHHHHHHH-HHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            7777   7777777777777777 567777777777777777777777777777777777766

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=7e-16  Score=84.28  Aligned_cols=73  Identities=16%  Similarity=0.306  Sum_probs=61.7

Q ss_pred             ccccceeeeCCCCccccCChhHHHHHHHh-hcCCCCCCCccccCCCCCCcccccChHHHHhh-hhhccCCCCCccCCccc
Q psy6628           5 HNIHRVVFTCQVCSKIFSYENGLKAHVRN-KHGSSEERPRFKCEGRGECDRVFTTRNMLNIH-IKRDHQKEKPYQCSQCS   82 (132)
Q Consensus         5 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~~-~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h-~~~~~~~~~~~~c~~C~   82 (132)
                      +..++++|.|..|++.|.....|..|++. |.+..++.+ |.|.   .|++.|.....|..| + ..|++++||.|.++.
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekp-f~C~---~Cgk~F~~~~~L~~H~~-r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSS-YVCV---ECNFLTKRYDALSEHNL-KYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCC-EEET---TTTEEESSTHHHHTHHH-HTSTTCCCEEEEECC
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCC-cCCC---CCCcccCCHHHHHHHHH-HhcCCCCCeeCCccc
Confidence            34688899999999999999999999974 643222445 9999   999999999999999 6 789999999998743

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=8e-15  Score=79.45  Aligned_cols=78  Identities=18%  Similarity=0.265  Sum_probs=67.0

Q ss_pred             cccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccc-cChHHHHhhhhhccCCCCCccCCcccccccChhhHHHH-HH
Q psy6628          19 KIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVF-TTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIH-SR   96 (132)
Q Consensus        19 ~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~-~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h-~~   96 (132)
                      -+|.....|..|++.+.+   +.+ |.|+   .|++.| .....|..|+ ..| ++++|.|..|++.|.....|..| +.
T Consensus        14 ~~~~~~~~~~~~~~~~~~---~~~-~~C~---~C~k~F~~~~~~L~~H~-~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~   84 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVD---KGS-VSCP---TCQAVGRKTIEGLKKHM-ENC-KQEMFTCHHCGKQLRSLAGMKYHVMA   84 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHH---TSC-EECT---TTCSCEESSHHHHHHHH-HHH-CCCCCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHhcC---CCC-cCCC---CCCCCcccCHHHHHHHH-HHH-CCCCeECCCCCCeeCCHHHHHHHhHH
Confidence            356777888899988876   455 9999   999999 9999999998 678 99999999999999999999999 88


Q ss_pred             HhcCCCCcc
Q psy6628          97 VHTGEKPYA  105 (132)
Q Consensus        97 ~h~~~~~~~  105 (132)
                      +|+++..+.
T Consensus        85 ~H~~~p~~~   93 (96)
T 2ctd_A           85 NHNSLPSGP   93 (96)
T ss_dssp             HTCCCSSCS
T ss_pred             hcCCCCCCC
Confidence            887654443

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.57  E-value=7.7e-15  Score=75.76  Aligned_cols=57  Identities=40%  Similarity=0.867  Sum_probs=43.9

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCc
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPY  104 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~  104 (132)
                      |.|+   .|++.|.....|..|+ ..|.++++|.|..|++.|.....|..|+..|.+++||
T Consensus        18 ~~C~---~C~k~f~~~~~l~~H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           18 YKCD---RCQASFRYKGNLASHK-TVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             BCCT---TSSCCBSCHHHHHHHH-HHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             eECC---CCCceeCCHHHHHHHH-HHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            7777   7777777777777777 5677777778888888887777788887777777765

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.56  E-value=6.1e-15  Score=77.97  Aligned_cols=48  Identities=21%  Similarity=0.512  Sum_probs=26.6

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHH
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHS   95 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~   95 (132)
                      |.|+   .|++.|.....|..|+ ..|++++||.|..|++.|.....|..|+
T Consensus        29 h~C~---~Cgk~F~~~~~L~~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~   76 (85)
T 2lv2_A           29 HLCP---VCGESFASKGAQERHL-RLLHAAQVFPCKYCPATFYSSPGLTRHI   76 (85)
T ss_dssp             EECT---TSCCEESSHHHHHHHH-HTTSCSSSEECTTSSCEESSHHHHHHHH
T ss_pred             EECC---CCCCCcCcHHHHhhhh-hhccCCCccCCCCCCCEeCCHHHHHHhC
Confidence            5555   5555555555555555 4455555555555555555555555554

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=1.2e-15  Score=83.03  Aligned_cols=80  Identities=25%  Similarity=0.320  Sum_probs=67.8

Q ss_pred             ccCChhHHHHHHHhhcCCCCCCCccccCCCCCCccccc-ChHHHHhhhhhccCC-CCCccCCcccccccChhhHHHHHHH
Q psy6628          20 IFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFT-TRNMLNIHIKRDHQK-EKPYQCSQCSKSFFSKYDHKIHSRV   97 (132)
Q Consensus        20 ~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~-~~~~l~~h~~~~~~~-~~~~~c~~C~~~~~~~~~l~~h~~~   97 (132)
                      .+.....+..|+++|.+   +.+ |.|+   .|++.|. ....|..|+ ..|.+ +++|.|.+|++.|.....|..|+..
T Consensus         5 s~~~~~~~~~h~~~h~~---~~~-~~C~---~C~k~f~~~~~~L~~H~-~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~   76 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHE---RGE-AVCP---TCNVVTRKTLVGLKKHM-EVCQKLQDALKCQHCRKQFKSKAGLNYHTMA   76 (98)
T ss_dssp             CCCCCCSCSHHHHTTTT---TSC-CCCT---TTCCCCSSCSHHHHHHH-HHHHHHHHHHSCSSSCCCCSCHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHHhcc---CCC-cCCC---CCCCChhhhHHHHHHHH-HHHcCCCCCEECCCCCCccCCHHHHHHHHHH
Confidence            34455667778888876   555 9999   9999999 999999998 66887 8899999999999999999999999


Q ss_pred             hcCCCCccCC
Q psy6628          98 HTGEKPYACE  107 (132)
Q Consensus        98 h~~~~~~~C~  107 (132)
                      |++++|....
T Consensus        77 h~~~kp~~~~   86 (98)
T 2gqj_A           77 EHSAKPSDAE   86 (98)
T ss_dssp             HSCSCSSCCC
T ss_pred             HcCCCCCCCC
Confidence            9999886543

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=2e-15  Score=76.39  Aligned_cols=60  Identities=18%  Similarity=0.265  Sum_probs=53.6

Q ss_pred             cCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCC-CchhccccchHHHHHHHhhhhhcc
Q psy6628          70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE-FCPLTFRHSSHLFRHRRSLHQMYE  131 (132)
Q Consensus        70 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~-~C~~~f~~~~~l~~H~~~~~~~~~  131 (132)
                      .-+.++|.|..|++.|. ...|..|+.+ .+++||.|+ +|++.|...+.|..|+++|-++.|
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            34578899999999999 9999999998 999999999 999999999999999998877654

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1.5e-14  Score=78.10  Aligned_cols=57  Identities=18%  Similarity=0.239  Sum_probs=29.8

Q ss_pred             ccCCcccccccChhhHHHHHHH-hcCCCC--------ccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          76 YQCSQCSKSFFSKYDHKIHSRV-HTGEKP--------YACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        76 ~~c~~C~~~~~~~~~l~~h~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +.|..|++.|.....|..|+.. |.++++        |.|.+|++.|...+.|..|+++|.+++||
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   91 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSG   91 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCC
T ss_pred             CcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCC
Confidence            3455555555555555555544 444444        55555555555555555555555555554

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=4.8e-17  Score=83.83  Aligned_cols=37  Identities=16%  Similarity=0.193  Sum_probs=19.2

Q ss_pred             CCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        73 ~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      +++|.|..|++.|.....|..|+..|.+++||.|++|
T Consensus        37 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           37 RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            3445555555555555555555555555555555544

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.49  E-value=6.5e-15  Score=71.52  Aligned_cols=50  Identities=22%  Similarity=0.228  Sum_probs=43.1

Q ss_pred             ccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          83 KSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        83 ~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +.|.....|..|+..|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            45667777888888899999999999999999999999999999888886

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=1e-13  Score=70.68  Aligned_cols=57  Identities=26%  Similarity=0.498  Sum_probs=39.3

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCc
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPY  104 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~  104 (132)
                      |.|+   .|++.|.....|..|+ ..|.++++|.|..|++.|.....|..|+..|++++|.
T Consensus        10 ~~C~---~C~k~f~~~~~L~~H~-~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A           10 EKCS---ECSYSCSSKAALRIHE-RIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             EECS---SSSCEESSHHHHHHHH-GGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             eECC---CCCcccCCHHHHHHHH-HHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            6666   6677777776777776 4566666777777777777777777777777666654

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=9.6e-14  Score=72.28  Aligned_cols=68  Identities=18%  Similarity=0.324  Sum_probs=51.9

Q ss_pred             cccceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCcc
Q psy6628           6 NIHRVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQ   77 (132)
Q Consensus         6 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~   77 (132)
                      +.++++|.|.+|++.|.....|..|+++|.+...+.+ |.|+   .|++.|.....|..|++..|.+.++..
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~-~~C~---~C~k~f~~~~~L~~H~~~~H~~~~~~~   69 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCE---FCGKRFEKPDSVAAHRSKSHPALLLAP   69 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCC-EECT---TTCCEESSHHHHHHHHHHTSTTTSSCC
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcc-cCCC---CCCchhCCHHHHHHHHHHhCCCCCCCc
Confidence            4577888899999888888888888888875211334 8888   888888888888888766677766544

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.47  E-value=4.1e-14  Score=72.57  Aligned_cols=58  Identities=41%  Similarity=0.858  Sum_probs=52.3

Q ss_pred             ccCCCCCccCCc--ccccccChhhHHHHHHHhcCCCCccCCC--chhccccchHHHHHHHhh
Q psy6628          69 DHQKEKPYQCSQ--CSKSFFSKYDHKIHSRVHTGEKPYACEF--CPLTFRHSSHLFRHRRSL  126 (132)
Q Consensus        69 ~~~~~~~~~c~~--C~~~~~~~~~l~~h~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~  126 (132)
                      .....++|.|..  |++.|.....|..|+..|.+++||.|.+  |++.|.....|..|+++|
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            356678899988  9999999999999999999999999975  999999999999998764

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.6e-13  Score=73.97  Aligned_cols=61  Identities=36%  Similarity=0.511  Sum_probs=50.8

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCCCCC--------ccCCcccccccChhhHHHHHHHhcCCCCccCC
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKP--------YQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE  107 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~--------~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~  107 (132)
                      +.|+   .|++.|.....|..|++..|.+.++        |.|..|++.|.....|..|+.+|++++||.|.
T Consensus        26 ~~C~---~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           26 RPKK---SCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSCC---CCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             Cccc---ccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            5566   7888888888888887333777766        89999999999999999999999999999986

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.46  E-value=7.3e-14  Score=65.46  Aligned_cols=45  Identities=38%  Similarity=0.567  Sum_probs=40.6

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSG-SSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCC-CccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            466 678899999999999999999999999999999999999887

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=7e-14  Score=65.51  Aligned_cols=45  Identities=31%  Similarity=0.510  Sum_probs=40.5

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSG-SSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCC-cCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            355 678899999999999999999999999999999999999887

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=1.4e-13  Score=70.57  Aligned_cols=54  Identities=37%  Similarity=0.762  Sum_probs=31.4

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCC
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGE  101 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~  101 (132)
                      |.|+   .|++.|.....|..|+ ..|.++++|.|..|++.|.....|..|+++|+++
T Consensus        15 ~~C~---~C~k~f~~~~~L~~H~-~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A           15 YGCV---ECGKAFSRSSILVQHQ-RVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             EECS---SSCCEESSHHHHHHHH-HGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             ccCC---CCCCccCCHHHHHHHH-HhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            5555   5555555555555555 4455555566666666666666666666555543

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=9.1e-14  Score=65.09  Aligned_cols=45  Identities=38%  Similarity=0.551  Sum_probs=40.6

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSG-SSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCC-CCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCC-CCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            466 678899999999999999999999999999999999999887

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.45  E-value=1e-13  Score=64.94  Aligned_cols=44  Identities=32%  Similarity=0.599  Sum_probs=40.0

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|.+|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SG-SSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CC-CCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CC-CCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55 678899999999999999999999999999999999999887

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.45  E-value=7.3e-14  Score=67.75  Aligned_cols=47  Identities=30%  Similarity=0.496  Sum_probs=42.4

Q ss_pred             ccCCCCCccCCcccccccChhhHHHHHH-HhcCCCCccCCCchhcccc
Q psy6628          69 DHQKEKPYQCSQCSKSFFSKYDHKIHSR-VHTGEKPYACEFCPLTFRH  115 (132)
Q Consensus        69 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~-~h~~~~~~~C~~C~~~f~~  115 (132)
                      .+.++++|.|..|++.|.....|..|+. +|.+++||.|.+|++.|.+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            4677889999999999999999999987 8999999999999999975

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=7.2e-14  Score=65.45  Aligned_cols=45  Identities=33%  Similarity=0.526  Sum_probs=40.6

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSG-SSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-SCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCc-CCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            366 678899999999999999999999999999999999999887

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=7.2e-14  Score=65.47  Aligned_cols=45  Identities=31%  Similarity=0.462  Sum_probs=40.6

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSG-SSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-SCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             Ccc-cccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            466 678899999999999999999999999999999999999887

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=9.2e-14  Score=65.10  Aligned_cols=45  Identities=36%  Similarity=0.501  Sum_probs=40.4

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSG-SSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCC-CCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCC-CCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            365 678899999999999999999999999999999999999887

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.44  E-value=7.2e-14  Score=65.48  Aligned_cols=45  Identities=27%  Similarity=0.449  Sum_probs=40.3

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSG-SSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCc-CccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            365 678899999999999999999999999999999999999887

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.44  E-value=1.5e-13  Score=67.22  Aligned_cols=50  Identities=32%  Similarity=0.590  Sum_probs=25.8

Q ss_pred             CCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCC
Q psy6628          51 ECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGE  101 (132)
Q Consensus        51 ~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~  101 (132)
                      .|++.|.....|..|+ ..|.++++|.|..|++.|.....|..|+.+|.++
T Consensus         6 ~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   55 (57)
T 1bbo_A            6 ECGIRXKKPSMLKKHI-RTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS   55 (57)
T ss_dssp             TTCCBCSSHHHHHHHH-HHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CCcCcCCCHHHHHHHH-HhcCCCCCccCCCCCchhcCHHHHHHHHHHhccc
Confidence            4555555555555554 3455555555555555555555555555554443

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=8.4e-14  Score=64.63  Aligned_cols=42  Identities=36%  Similarity=0.536  Sum_probs=38.6

Q ss_pred             hccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        68 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      ..|+++++|.|..|++.|.....|..|+.+|.+++||.|.+|
T Consensus         3 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            568889999999999999999999999999999999999887

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=7.2e-14  Score=65.48  Aligned_cols=45  Identities=31%  Similarity=0.544  Sum_probs=40.3

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSG-SSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCC-CCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            365 678899999999999999999999999999999999999887

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=8e-14  Score=65.29  Aligned_cols=45  Identities=33%  Similarity=0.432  Sum_probs=40.4

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSG-SSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCc-ccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            366 678899999999999999999999999999999999999887

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=7.1e-14  Score=65.50  Aligned_cols=45  Identities=33%  Similarity=0.603  Sum_probs=40.3

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSG-SSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCC-CCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             Ccc-CCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            366 678899999999999999999999999999999999999887

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=7.4e-14  Score=65.42  Aligned_cols=45  Identities=33%  Similarity=0.529  Sum_probs=40.5

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSG-SSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCS-SCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCC-CCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            365 678899999999999999999999999999999999999887

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=7.5e-14  Score=65.42  Aligned_cols=45  Identities=36%  Similarity=0.604  Sum_probs=40.3

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSG-SSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCC-CCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            365 678889999999999999999999999999999999999887

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=8.3e-14  Score=65.25  Aligned_cols=45  Identities=33%  Similarity=0.503  Sum_probs=40.2

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSG-SSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCC-CSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCc-cccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            365 678899999999999999999999999999999999999887

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=8e-14  Score=65.33  Aligned_cols=45  Identities=24%  Similarity=0.311  Sum_probs=40.2

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|...+.|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSG-SSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCC-CCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCC-CCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            366 678899999999999999999999999999999999999887

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.44  E-value=1.7e-13  Score=67.02  Aligned_cols=51  Identities=31%  Similarity=0.679  Sum_probs=27.9

Q ss_pred             ceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhh
Q psy6628           9 RVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHI   66 (132)
Q Consensus         9 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~   66 (132)
                      +++|.|++|++.|.....|..|+++|.+   +.+ |.|+   .|++.|.....|..|+
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~-~~C~---~C~~~f~~~~~l~~H~   52 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTG---EKP-YKCE---FCEYAAAQKTSLRYHL   52 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHC---CCC-EECS---SSSCEESSHHHHHHHH
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCC---CCC-cCCC---CCcchhCCHHHHHHHH
Confidence            3455666666666666666666665554   333 5555   5556666555555555

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1.2e-13  Score=64.71  Aligned_cols=44  Identities=32%  Similarity=0.579  Sum_probs=39.9

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         3 h~-~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SG-SSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CC-SCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CC-CCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            55 678899999999999999999999999999999999999887

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.44  E-value=6.5e-14  Score=65.61  Aligned_cols=45  Identities=38%  Similarity=0.511  Sum_probs=40.3

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSG-SSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCC-CCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccc-cCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            465 678899999999999999999999999999999999999887

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.44  E-value=8e-14  Score=65.30  Aligned_cols=45  Identities=31%  Similarity=0.499  Sum_probs=40.0

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSG-SSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSC-SSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCc-cCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            365 678889999999999999999999999999999999999876

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=9.3e-14  Score=65.08  Aligned_cols=45  Identities=29%  Similarity=0.481  Sum_probs=39.9

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSG-SSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSS-CTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             Ccc-cCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            466 668889999999999999999999999999999999999876

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=1.5e-16  Score=81.87  Aligned_cols=64  Identities=16%  Similarity=0.224  Sum_probs=49.6

Q ss_pred             HHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          61 MLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        61 ~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|..|+ ..|.++++|.|..|++.|.....|..       +++|.|++|++.|...+.|..|+++|++++||
T Consensus         5 ~l~~H~-~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~   68 (73)
T 2ctu_A            5 SSGKRQ-KIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTS   68 (73)
T ss_dssp             SCCCCC-CCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCS
T ss_pred             hHHHHH-HHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCC
Confidence            456676 56777888888888888877777665       67888888888888888888888888877775

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1e-13  Score=64.93  Aligned_cols=45  Identities=33%  Similarity=0.564  Sum_probs=40.4

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSG-SSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCC-CCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCc-cccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            355 678899999999999999999999999999999999999887

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=9.3e-14  Score=65.09  Aligned_cols=45  Identities=36%  Similarity=0.549  Sum_probs=40.4

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+..|.+++||.|++|
T Consensus         2 ~H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSG-SSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCc-ccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            355 678899999999999999999999999999999999999887

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1.4e-13  Score=64.45  Aligned_cols=44  Identities=32%  Similarity=0.562  Sum_probs=40.0

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+..|.+++||.|++|
T Consensus         3 h~-~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SG-SSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SC-CCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CC-cCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55 668899999999999999999999999999999999999887

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1.2e-13  Score=64.73  Aligned_cols=44  Identities=34%  Similarity=0.576  Sum_probs=39.4

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      |+ ..|.++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SG-SSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CC-SSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CC-CCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55 568889999999999999999999999999999999999887

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=9.6e-14  Score=65.03  Aligned_cols=45  Identities=40%  Similarity=0.626  Sum_probs=40.0

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+..|.+++||.|++|
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSG-SSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSS-SCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCC-CCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            365 678889999999999999999999999999999999999887

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=7.8e-14  Score=65.35  Aligned_cols=45  Identities=36%  Similarity=0.542  Sum_probs=40.3

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|.+|
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSG-SSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-SSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             Ccc-cCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            365 678899999999999999999999999999999999999887

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.43  E-value=9.6e-14  Score=65.01  Aligned_cols=45  Identities=38%  Similarity=0.500  Sum_probs=40.4

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|.+|
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSG-SSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSC-CSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCC-CCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            365 678899999999999999999999999999999999999887

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=7.8e-14  Score=65.37  Aligned_cols=45  Identities=31%  Similarity=0.449  Sum_probs=40.3

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSG-SSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCc-CCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            365 678889999999999999999999999999999999999887

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1e-13  Score=64.94  Aligned_cols=45  Identities=36%  Similarity=0.579  Sum_probs=40.0

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSG-SSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSS-CCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCC-cCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            355 678899999999999999999999999999999999999887

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1.3e-13  Score=64.55  Aligned_cols=44  Identities=43%  Similarity=0.601  Sum_probs=39.7

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+..|.+++||.|++|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SG-SSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CS-SCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CC-cCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            55 678899999999999999999999999999999999999887

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1.1e-13  Score=64.86  Aligned_cols=45  Identities=36%  Similarity=0.500  Sum_probs=40.1

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSG-SSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCC-CCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            365 678889999999999999999999999999999999999887

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=8.3e-14  Score=65.25  Aligned_cols=45  Identities=36%  Similarity=0.539  Sum_probs=40.2

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSG-SSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCC-CCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcC-cCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            355 678899999999999999999999999999999999999887

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=9.8e-14  Score=65.02  Aligned_cols=44  Identities=30%  Similarity=0.539  Sum_probs=39.8

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SG-SSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CC-SSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cc-cccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55 678899999999999999999999999999999999999877

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=1e-13  Score=64.90  Aligned_cols=45  Identities=27%  Similarity=0.400  Sum_probs=40.1

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSG-SSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCC-CCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCc-ccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            355 678899999999999999999999999999999999999887

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=8.8e-14  Score=65.16  Aligned_cols=45  Identities=33%  Similarity=0.503  Sum_probs=39.9

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSG-SSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCC-cCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            355 568889999999999999999999999999999999999887

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=1.2e-13  Score=64.64  Aligned_cols=44  Identities=39%  Similarity=0.627  Sum_probs=39.6

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SG-SSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CC-CSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CC-CCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55 668889999999999999999999999999999999999887

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.42  E-value=2.3e-14  Score=81.51  Aligned_cols=82  Identities=20%  Similarity=0.240  Sum_probs=68.0

Q ss_pred             ceeeeCCCCccccC------ChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCccc
Q psy6628           9 RVVFTCQVCSKIFS------YENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCS   82 (132)
Q Consensus         9 ~~~~~C~~C~~~f~------~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~   82 (132)
                      .+.+.|.+|++.|.      ....|..|+ .|.+   +.+ |.|+   .|++.|.....|..|+ ..|  +++|.|..|+
T Consensus        39 ~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~---~~~-~~C~---~C~k~f~~~~~l~~H~-~~H--~~~~~C~~C~  107 (129)
T 2wbt_A           39 QKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKA---ISQ-FVCP---LCLMPFSSSVSLKQHI-RYT--EHTKVCPVCK  107 (129)
T ss_dssp             HHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHH---HCS-EECT---TTCCEESSHHHHHHHH-HHT--CCCCBCTTTC
T ss_pred             hCcccchhhhcccCCCcccCCHHHHHHHH-HhCC---CCC-eECC---CCCcccCCHhHHHHHH-HHC--CCCCCCCCCC
Confidence            34567777776655      556677776 5665   455 9999   9999999999999998 667  7899999999


Q ss_pred             ccccChhhHHHHHHHhcCC
Q psy6628          83 KSFFSKYDHKIHSRVHTGE  101 (132)
Q Consensus        83 ~~~~~~~~l~~h~~~h~~~  101 (132)
                      +.|.....|..|+..|++.
T Consensus       108 k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A          108 KEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             CBCSSHHHHHHHHHHTTCC
T ss_pred             cccCCHHHHHHHHHHHCCc
Confidence            9999999999999999875

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=7.8e-14  Score=65.35  Aligned_cols=45  Identities=36%  Similarity=0.581  Sum_probs=40.2

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSG-SSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCC-CCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            365 678899999999999999999999999999999999999887

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=1.2e-13  Score=64.65  Aligned_cols=45  Identities=36%  Similarity=0.572  Sum_probs=40.4

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSG-SSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CST-TCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             Ccc-cCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            466 678899999999999999999999999999999999999887

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=1e-13  Score=64.90  Aligned_cols=45  Identities=31%  Similarity=0.386  Sum_probs=40.1

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|+.|
T Consensus         2 ~H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSG-SSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCC-CCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             Ccc-ccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            365 678899999999999999999999999999999999999887

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=1.8e-13  Score=64.12  Aligned_cols=44  Identities=25%  Similarity=0.356  Sum_probs=40.0

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|.+|
T Consensus         3 H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SG-SSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CS-CCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cc-cccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55 678899999999999999999999999999999999999887

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=1.7e-13  Score=64.20  Aligned_cols=44  Identities=32%  Similarity=0.612  Sum_probs=39.9

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+..|.+++||.|.+|
T Consensus         3 h~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SG-SSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CS-SCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CC-CCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            55 678899999999999999999999999999999999999887

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=4.2e-13  Score=66.29  Aligned_cols=55  Identities=36%  Similarity=0.824  Sum_probs=31.4

Q ss_pred             eeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCC
Q psy6628          11 VFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQK   72 (132)
Q Consensus        11 ~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~   72 (132)
                      +|.|+.|++.|.....|..|+++|.+   +.+ |.|+   .|++.|.....|..|++..|.+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~-~~C~---~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHTN---EKP-YPCG---LCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTS---SCS-EECT---TTCCEESSHHHHHHHHTTTSCC
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhCC---CCC-ccCC---CCCCccCCHHHHHHHHHHHcCC
Confidence            45666666666666666666665544   333 5665   5666666666666664334443

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=1.3e-13  Score=64.52  Aligned_cols=44  Identities=39%  Similarity=0.575  Sum_probs=40.0

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|.+|
T Consensus         3 h~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SG-SSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CS-CCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CC-CccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            55 678899999999999999999999999999999999999887

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.40  E-value=1.9e-13  Score=64.02  Aligned_cols=44  Identities=39%  Similarity=0.562  Sum_probs=39.4

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|.+|
T Consensus         3 h~-~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SG-SSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SC-CSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CC-CCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44 568889999999999999999999999999999999999887

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=2.2e-13  Score=63.82  Aligned_cols=44  Identities=36%  Similarity=0.592  Sum_probs=39.8

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         3 h~-~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SG-SSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CC-CCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CC-CCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            44 568889999999999999999999999999999999999887

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=1.3e-13  Score=64.58  Aligned_cols=44  Identities=36%  Similarity=0.708  Sum_probs=39.7

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         3 H~-~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SG-SSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CC-CCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CC-cCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            55 678899999999999999999999999999999999999887

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=1.9e-13  Score=64.00  Aligned_cols=45  Identities=33%  Similarity=0.596  Sum_probs=38.7

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSG-SSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-SSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCC-CCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            355 668888999999999999999999999999999999998865

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=9.2e-13  Score=68.35  Aligned_cols=58  Identities=22%  Similarity=0.642  Sum_probs=26.8

Q ss_pred             cceeeeCCCCccccCChhHHHHHHHh-hcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccC
Q psy6628           8 HRVVFTCQVCSKIFSYENGLKAHVRN-KHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ   71 (132)
Q Consensus         8 ~~~~~~C~~C~~~f~~~~~l~~h~~~-~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~   71 (132)
                      ++++|.|++|++.|.....|..|+.. |.+   +..+|.|+   .|++.|.....|..|++..|.
T Consensus        12 ~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~---~~~~~~C~---~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A           12 GEKPYECYICHARFTQSGTMKMHILQKHTE---NVAKFHCP---HCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHHHSSS---SCSSEECS---SSSCEESSHHHHHHHHHHTSC
T ss_pred             CCCCeECCCcCchhCCHHHHHHHHHHhcCC---CCCccCCC---CCCCccCCHHHHHHHHHHhCC
Confidence            44455555555555555555555542 221   11125555   455555555555555433333

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=3.5e-13  Score=63.32  Aligned_cols=44  Identities=34%  Similarity=0.532  Sum_probs=39.3

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHH-HhcCCCCccCCCc
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSR-VHTGEKPYACEFC  109 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~-~h~~~~~~~C~~C  109 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+. +|.+++||.|.+|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SG-SSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CC-CCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cc-cccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            55 66888999999999999999999999999 9999999999887

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=4.4e-13  Score=62.73  Aligned_cols=44  Identities=34%  Similarity=0.579  Sum_probs=39.1

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+..|.+++||.|++|
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SG-SSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CC-CSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CC-CCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55 668889999999999999999999999999999999999865

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.36  E-value=3.4e-14  Score=70.91  Aligned_cols=54  Identities=17%  Similarity=0.447  Sum_probs=46.5

Q ss_pred             HHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHH
Q psy6628          62 LNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHL  119 (132)
Q Consensus        62 l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l  119 (132)
                      |..|+ ..|+++++|.|..|++.|.....|.   ..|.+++||.|++|++.|...+++
T Consensus         2 L~~h~-~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            2 IETDE-RDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCCCS-SSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTC
T ss_pred             hhhHH-HHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccc
Confidence            34566 6799999999999999999888776   789999999999999999887664

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.36  E-value=6.3e-13  Score=61.89  Aligned_cols=42  Identities=29%  Similarity=0.426  Sum_probs=39.2

Q ss_pred             ccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCch
Q psy6628          69 DHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCP  110 (132)
Q Consensus        69 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~  110 (132)
                      .|+++++|.|..|++.|.....|..|+.+|.++++|.|++|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            578899999999999999999999999999999999999986

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=5.4e-13  Score=67.16  Aligned_cols=55  Identities=20%  Similarity=0.539  Sum_probs=35.8

Q ss_pred             cccceeeeCCCCccccCChhHHHHHHHhhc-CCCCCCCccccCCCCCCcccccChHHHHhhh
Q psy6628           6 NIHRVVFTCQVCSKIFSYENGLKAHVRNKH-GSSEERPRFKCEGRGECDRVFTTRNMLNIHI   66 (132)
Q Consensus         6 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~   66 (132)
                      +.++++|.|+.|++.|.....|..|++.++ ..  +.+ |.|+   .|++.|.....|..|+
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~--~~~-~~C~---~C~k~f~~~~~L~~H~   60 (66)
T 2drp_A            5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRN--VKV-YPCP---FCFKEFTRKDNMTAHV   60 (66)
T ss_dssp             EEETTEEECTTTCCEESSHHHHHHHHHHHSSSS--CCC-EECT---TTCCEESCHHHHHHHH
T ss_pred             cCCCcceECCCCcchhCCHHHHHHHHHHHcCCC--CcC-eECC---CCCCccCCHHHHHHHH
Confidence            456667777777777777777777776632 11  333 6776   6777777777777776

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.35  E-value=4.8e-13  Score=63.21  Aligned_cols=43  Identities=30%  Similarity=0.505  Sum_probs=37.8

Q ss_pred             ccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchh
Q psy6628          69 DHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPL  111 (132)
Q Consensus        69 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~  111 (132)
                      .+.++++|.|..|++.|.....|..|+.+|.+++||.|.+|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            3567788999999999999999999999999999999999975

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.34  E-value=8.5e-13  Score=61.73  Aligned_cols=44  Identities=36%  Similarity=0.600  Sum_probs=37.1

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSG-SSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCC-CCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            355 56888888999999999999999999998898889988864

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=8.2e-13  Score=61.78  Aligned_cols=42  Identities=43%  Similarity=0.625  Sum_probs=38.0

Q ss_pred             hccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        68 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      ..|.++++|.|..|++.|.....|..|+.+|.+++||.|++|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            458888999999999999999999999999999999999887

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.4e-13  Score=62.38  Aligned_cols=40  Identities=25%  Similarity=0.507  Sum_probs=30.7

Q ss_pred             hccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCC
Q psy6628          68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE  107 (132)
Q Consensus        68 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~  107 (132)
                      ..|+++++|.|..|++.|.....|..|+.+|.+++||.|.
T Consensus         3 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             SSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             cCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4577777788888888888888888888778777777763

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.33  E-value=2e-13  Score=62.66  Aligned_cols=40  Identities=35%  Similarity=0.622  Sum_probs=31.2

Q ss_pred             hccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCC
Q psy6628          68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE  107 (132)
Q Consensus        68 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~  107 (132)
                      ..|+++++|.|..|++.|.....|..|+.+|.+++||.|+
T Consensus         3 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             SSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            4577777888888888888888888888888888888774

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.1e-12  Score=61.34  Aligned_cols=44  Identities=34%  Similarity=0.608  Sum_probs=37.2

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSG-SSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             Ccc-CCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            355 56888889999999999999999999999999899998864

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=1.1e-12  Score=61.29  Aligned_cols=43  Identities=35%  Similarity=0.590  Sum_probs=36.4

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SG-SSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SC-CCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             Cc-cccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            55 56888888999999999999889999988888888888864

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.2e-12  Score=61.18  Aligned_cols=44  Identities=39%  Similarity=0.585  Sum_probs=37.3

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSG-SSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             Ccc-cccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            355 56888889999999999999999999999999899998864

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.2e-12  Score=61.19  Aligned_cols=44  Identities=39%  Similarity=0.582  Sum_probs=37.1

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++
T Consensus         2 ~H~-~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSG-SSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCC-CCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            355 56888889999999999999999999999998899998864

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.4e-12  Score=60.97  Aligned_cols=44  Identities=39%  Similarity=0.606  Sum_probs=36.7

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSG-SSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-SCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             Ccc-cCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            355 56888888999999999999889999988888888888864

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.32  E-value=1.3e-12  Score=59.84  Aligned_cols=39  Identities=28%  Similarity=0.520  Sum_probs=33.1

Q ss_pred             HHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        94 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      |+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   39 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGP   39 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCC
Confidence            455678888999999999999999999999888888876

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.2e-12  Score=61.19  Aligned_cols=44  Identities=36%  Similarity=0.640  Sum_probs=36.8

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++
T Consensus         2 ~H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            2 SSG-SSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSS-SSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCC-cCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            355 56888888999999999998889999988888888888864

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.2e-12  Score=61.24  Aligned_cols=43  Identities=35%  Similarity=0.571  Sum_probs=35.5

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++
T Consensus         3 H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            3 SG-SSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CC-CCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CC-cCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            55 56788888888888888888888888888888888888864

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=2.1e-13  Score=63.21  Aligned_cols=42  Identities=21%  Similarity=0.413  Sum_probs=30.6

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCC
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE  107 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~  107 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|+
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SG-SSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CS-CCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             Cc-cccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            44 4577777777777777777777777777777777777763

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.1e-13  Score=63.24  Aligned_cols=39  Identities=33%  Similarity=0.617  Sum_probs=22.7

Q ss_pred             hccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccC
Q psy6628          68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC  106 (132)
Q Consensus        68 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C  106 (132)
                      ..|+++++|.|..|++.|.....|..|+.+|.+++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            5 SSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             cccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            445555556666666666666666666655555555554

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.4e-12  Score=60.90  Aligned_cols=44  Identities=41%  Similarity=0.706  Sum_probs=36.5

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSG-SSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCC-CCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccc-cCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            355 56888888888889888888888888888888888888863

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.32  E-value=2.6e-13  Score=63.51  Aligned_cols=40  Identities=33%  Similarity=0.595  Sum_probs=37.4

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.+++||.|++|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPS   41 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCS
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCC
Confidence            4677899999999999999999999999999999999987

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.3e-13  Score=63.29  Aligned_cols=39  Identities=44%  Similarity=0.738  Sum_probs=25.7

Q ss_pred             hccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccC
Q psy6628          68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC  106 (132)
Q Consensus        68 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C  106 (132)
                      ..|+++++|.|..|++.|.....|..|+.+|.+++||.|
T Consensus         4 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            4 GSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             cccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            456666666666666666666666666666666666655

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.3e-12  Score=61.11  Aligned_cols=43  Identities=35%  Similarity=0.581  Sum_probs=36.1

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++
T Consensus         3 H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            3 SG-SSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CC-CCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CC-cCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            55 56888888889889988888888888888888888888863

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=3.2e-13  Score=63.18  Aligned_cols=42  Identities=26%  Similarity=0.397  Sum_probs=30.5

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCC
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE  107 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~  107 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|+
T Consensus         3 H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SG-SSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CC-CCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cc-cccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            54 4577777777777777777777777777777777777764

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=3e-13  Score=63.31  Aligned_cols=40  Identities=30%  Similarity=0.518  Sum_probs=37.5

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPS   41 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCS
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCC
Confidence            4778899999999999999999999999999999999987

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2e-12  Score=59.17  Aligned_cols=39  Identities=31%  Similarity=0.537  Sum_probs=33.4

Q ss_pred             HHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        94 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      |+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   39 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGP   39 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            455678889999999999999999999999988888886

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.3e-12  Score=61.04  Aligned_cols=42  Identities=40%  Similarity=0.665  Sum_probs=37.9

Q ss_pred             hccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        68 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      ..|+++++|.|..|++.|.....|..|+..|.+++||.|.+|
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            468888999999999999999999999999999999999887

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.8e-13  Score=63.42  Aligned_cols=40  Identities=38%  Similarity=0.577  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPS   41 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCC
Confidence            4677889999999999999999999999999999999987

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.9e-12  Score=60.51  Aligned_cols=43  Identities=30%  Similarity=0.569  Sum_probs=36.4

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++
T Consensus         3 h~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SG-SSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CC-SSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CC-CCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            55 56888888999999999999999999998898888888864

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.9e-13  Score=63.35  Aligned_cols=40  Identities=28%  Similarity=0.542  Sum_probs=37.4

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSS   41 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSS
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCC
Confidence            4677899999999999999999999999999999999986

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.8e-13  Score=63.39  Aligned_cols=40  Identities=28%  Similarity=0.539  Sum_probs=37.4

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPS   41 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCS
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            4677899999999999999999999999999999999987

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.31  E-value=3e-13  Score=63.33  Aligned_cols=40  Identities=33%  Similarity=0.466  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPS   41 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSS
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            3677899999999999999999999999999999999987

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.7e-12  Score=60.68  Aligned_cols=43  Identities=35%  Similarity=0.619  Sum_probs=36.3

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+..|.+++||.|++
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            3 SG-SSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CC-CCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CC-CCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            55 56888888999999999998889999988888888888864

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.5e-13  Score=63.60  Aligned_cols=40  Identities=33%  Similarity=0.538  Sum_probs=37.4

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPS   41 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCC
Confidence            4677899999999999999999999999999999999987

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.3e-12  Score=61.05  Aligned_cols=44  Identities=41%  Similarity=0.647  Sum_probs=37.1

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSG-SSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCS-CCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCC-CCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            355 56888889999999999999999999999998889998864

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.2e-12  Score=61.25  Aligned_cols=43  Identities=37%  Similarity=0.621  Sum_probs=35.6

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++
T Consensus         3 H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SG-SSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CC-CSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             cc-cCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            55 56888888888888888888888888888888888888863

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.31  E-value=2.9e-13  Score=63.37  Aligned_cols=40  Identities=28%  Similarity=0.415  Sum_probs=37.4

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPS   41 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCC
Confidence            4677899999999999999999999999999999999987

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3e-13  Score=63.34  Aligned_cols=43  Identities=37%  Similarity=0.599  Sum_probs=35.3

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCC
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE  107 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~  107 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|+
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSG-SSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCC-CCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             Ccc-cccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            355 5688888888888888888888888888888888888875

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.2e-13  Score=63.21  Aligned_cols=40  Identities=28%  Similarity=0.338  Sum_probs=37.4

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPS   41 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCC
Confidence            4677899999999999999999999999999999999987

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.3e-13  Score=63.11  Aligned_cols=40  Identities=33%  Similarity=0.482  Sum_probs=37.4

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.++++|.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPS   41 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            4677899999999999999999999999999999999987

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.2e-13  Score=62.57  Aligned_cols=42  Identities=36%  Similarity=0.645  Sum_probs=31.0

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCC
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE  107 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~  107 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|+
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            3 SG-SSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CS-SCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             Cc-cCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            54 5577777777777777777777777777777777777763

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=4.5e-13  Score=62.70  Aligned_cols=42  Identities=26%  Similarity=0.471  Sum_probs=32.9

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCC
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE  107 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~  107 (132)
                      |+ ..|.++++|.|..|++.|.....|..|+.+|.+++||.|+
T Consensus         3 h~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            3 SG-SSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CC-SCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CC-cCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            55 5677778888888888888888888888888888888775

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.31  E-value=4.9e-13  Score=62.57  Aligned_cols=40  Identities=28%  Similarity=0.364  Sum_probs=37.2

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPS   41 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCC
Confidence            3677899999999999999999999999999999999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3e-13  Score=63.30  Aligned_cols=40  Identities=28%  Similarity=0.487  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPS   41 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCS
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCC
Confidence            4677899999999999999999999999999999999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.7e-13  Score=63.46  Aligned_cols=40  Identities=33%  Similarity=0.522  Sum_probs=37.4

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.+++||.|++|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPS   41 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCS
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCC
Confidence            4677899999999999999999999999999999999987

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.5e-13  Score=62.32  Aligned_cols=39  Identities=31%  Similarity=0.621  Sum_probs=24.3

Q ss_pred             hccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccC
Q psy6628          68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC  106 (132)
Q Consensus        68 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C  106 (132)
                      ..|+++++|.|..|++.|.....|..|+.+|.+++||.|
T Consensus         4 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            4 GSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             cccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            345566666666666666666666666666666666654

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.5e-13  Score=63.07  Aligned_cols=40  Identities=30%  Similarity=0.471  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|++|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPS   41 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSS
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCC
Confidence            4677889999999999999999999999999999999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=3.8e-13  Score=62.33  Aligned_cols=39  Identities=28%  Similarity=0.525  Sum_probs=36.2

Q ss_pred             HHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        94 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      |+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   39 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPS   39 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            456788999999999999999999999999999999987

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.2e-13  Score=63.80  Aligned_cols=44  Identities=32%  Similarity=0.417  Sum_probs=37.1

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|+.
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSG-SSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSC-CCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             Ccc-ccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            355 56888889999999999999999999998898889988863

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.7e-12  Score=60.65  Aligned_cols=43  Identities=37%  Similarity=0.540  Sum_probs=35.7

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      |+ ..|.++++|.|..|++.|.....|..|+.+|.+++||.|++
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            3 SG-SSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CC-SCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             Cc-cccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            55 56888888888888888888888888888888888888863

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.9e-13  Score=62.87  Aligned_cols=40  Identities=30%  Similarity=0.454  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.+++||.|++|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHS   41 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCC
Confidence            4677899999999999999999999999999999999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.1e-13  Score=63.21  Aligned_cols=40  Identities=28%  Similarity=0.441  Sum_probs=37.4

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|++|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPS   41 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCC
Confidence            4677899999999999999999999999999999999987

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.4e-12  Score=60.94  Aligned_cols=43  Identities=40%  Similarity=0.675  Sum_probs=36.0

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SG-SSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CC-CSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CC-CCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            55 56888888888888888888888888888888888888864

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.5e-12  Score=60.84  Aligned_cols=40  Identities=38%  Similarity=0.546  Sum_probs=33.4

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.+++||.|++|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLS   41 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSS
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCC
Confidence            3666788888888888888888888888888888888876

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.6e-13  Score=63.01  Aligned_cols=40  Identities=30%  Similarity=0.434  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPS   41 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCS
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCC
Confidence            4677899999999999999999999999999999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.4e-13  Score=63.10  Aligned_cols=40  Identities=30%  Similarity=0.488  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPS   41 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTT
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCC
Confidence            3677899999999999999999999999999999999987

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.1e-13  Score=63.21  Aligned_cols=40  Identities=33%  Similarity=0.472  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPS   41 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCS
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCC
Confidence            4677899999999999999999999999999999999987

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.1e-13  Score=63.24  Aligned_cols=40  Identities=30%  Similarity=0.607  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   41 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPS   41 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4677899999999999999999999999999999999987

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=3.9e-13  Score=62.91  Aligned_cols=40  Identities=33%  Similarity=0.520  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPS   41 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            3677899999999999999999999999999999999987

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.6e-13  Score=63.53  Aligned_cols=40  Identities=28%  Similarity=0.411  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPS   41 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCC
Confidence            3677899999999999999999999999999999999987

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.4e-12  Score=60.12  Aligned_cols=42  Identities=33%  Similarity=0.598  Sum_probs=35.3

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCC
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE  107 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~  107 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|+
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SG-SSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CC-CSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CC-CCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            55 5688888888888888888888888888888888888886

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.8e-13  Score=62.74  Aligned_cols=42  Identities=38%  Similarity=0.554  Sum_probs=32.4

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCC
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE  107 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~  107 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|+
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            3 SG-SSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SC-CCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CC-cCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            55 5677778888888888888888888888888888887774

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.30  E-value=3.1e-13  Score=63.23  Aligned_cols=40  Identities=23%  Similarity=0.341  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.+++||.|++|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   41 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPS   41 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCS
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCc
Confidence            4677899999999999999999999999999999999987

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.6e-13  Score=63.05  Aligned_cols=40  Identities=33%  Similarity=0.554  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPS   41 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCS
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCC
Confidence            4677889999999999999999999999999999999987

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.1e-12  Score=60.30  Aligned_cols=43  Identities=35%  Similarity=0.646  Sum_probs=35.9

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+..|.+++||.|+.
T Consensus         3 H~-~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            3 SG-SSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CC-CSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CC-cccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            55 56888888888888888888888888888888888888863

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=4.4e-13  Score=62.73  Aligned_cols=39  Identities=31%  Similarity=0.547  Sum_probs=36.7

Q ss_pred             HHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        94 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      |+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSS   41 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCC
Confidence            667889999999999999999999999999999999987

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.9e-12  Score=60.54  Aligned_cols=43  Identities=33%  Similarity=0.536  Sum_probs=35.8

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++
T Consensus         3 h~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SG-SSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CS-SSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CC-CCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            44 56888888888888888888888888888888888888864

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.9e-12  Score=60.52  Aligned_cols=44  Identities=34%  Similarity=0.594  Sum_probs=36.4

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|+.
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSG-SSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             Ccc-cccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            355 56888888889889988888888888888888888888863

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.1e-13  Score=63.24  Aligned_cols=40  Identities=35%  Similarity=0.537  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPS   41 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCC
Confidence            4677899999999999999999999999999999999987

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.2e-13  Score=63.18  Aligned_cols=40  Identities=33%  Similarity=0.515  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPS   41 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCC
Confidence            4677899999999999999999999999999999999987

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.2e-13  Score=63.22  Aligned_cols=40  Identities=38%  Similarity=0.557  Sum_probs=37.2

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPS   41 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCS
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCC
Confidence            3677889999999999999999999999999999999987

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.29  E-value=4.3e-13  Score=61.48  Aligned_cols=39  Identities=31%  Similarity=0.553  Sum_probs=25.3

Q ss_pred             hccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccC
Q psy6628          68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC  106 (132)
Q Consensus        68 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C  106 (132)
                      ..|+++++|.|..|++.|.....|..|+.+|.+++||.|
T Consensus         4 ~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            4 GSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             SCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             ccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            446666666666666666666666666666666666655

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4.6e-13  Score=62.64  Aligned_cols=40  Identities=38%  Similarity=0.546  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   41 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPS   41 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCS
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCC
Confidence            4677899999999999999999999999999999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3.2e-13  Score=63.19  Aligned_cols=40  Identities=40%  Similarity=0.599  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPS   41 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCS
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCC
Confidence            4677899999999999999999999999999999999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4e-13  Score=62.86  Aligned_cols=40  Identities=35%  Similarity=0.543  Sum_probs=37.4

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPS   41 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            4677899999999999999999999999999999999987

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=5.2e-13  Score=62.49  Aligned_cols=40  Identities=28%  Similarity=0.371  Sum_probs=37.2

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPS   41 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCC
Confidence            3667889999999999999999999999999999999987

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3.8e-13  Score=62.95  Aligned_cols=40  Identities=33%  Similarity=0.485  Sum_probs=37.2

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPS   41 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCC
Confidence            3677889999999999999999999999999999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3.9e-13  Score=62.92  Aligned_cols=40  Identities=30%  Similarity=0.513  Sum_probs=37.4

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPS   41 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4677899999999999999999999999999999999987

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4.5e-13  Score=62.69  Aligned_cols=40  Identities=28%  Similarity=0.377  Sum_probs=37.2

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.++++|.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPS   41 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCC
Confidence            3677899999999999999999999999999999999987

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=3.1e-13  Score=62.01  Aligned_cols=39  Identities=36%  Similarity=0.606  Sum_probs=25.5

Q ss_pred             hccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccC
Q psy6628          68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC  106 (132)
Q Consensus        68 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C  106 (132)
                      ..|+++++|.|..|++.|.....|..|+..|.+++||.|
T Consensus         4 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            4 GSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             cccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            446666666666666666666666666666666666655

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3.9e-13  Score=62.91  Aligned_cols=40  Identities=33%  Similarity=0.508  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPS   41 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCS
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCC
Confidence            4677899999999999999999999999999999999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3.3e-13  Score=63.14  Aligned_cols=40  Identities=35%  Similarity=0.571  Sum_probs=37.4

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   41 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPS   41 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCC
Confidence            4677899999999999999999999999999999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4.1e-13  Score=62.80  Aligned_cols=40  Identities=30%  Similarity=0.429  Sum_probs=37.2

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHS   41 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCS
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            4677899999999999999999999999999999999986

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=5.8e-13  Score=62.29  Aligned_cols=40  Identities=30%  Similarity=0.409  Sum_probs=37.2

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPS   41 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCC
Confidence            3677899999999999999999999999999999999987

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3.9e-13  Score=62.88  Aligned_cols=40  Identities=25%  Similarity=0.468  Sum_probs=37.2

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPS   41 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCS
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCC
Confidence            3677889999999999999999999999999999999987

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.1e-12  Score=59.74  Aligned_cols=40  Identities=33%  Similarity=0.473  Sum_probs=34.0

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGP   41 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSS
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCC
Confidence            3667788888999999999999999999999888888876

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=5.2e-13  Score=62.43  Aligned_cols=40  Identities=33%  Similarity=0.611  Sum_probs=37.4

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|++|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPS   41 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCC
Confidence            4677899999999999999999999999999999999986

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4.7e-13  Score=62.63  Aligned_cols=40  Identities=33%  Similarity=0.557  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPS   41 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSS
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCC
Confidence            4677899999999999999999999999999999999987

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=2.3e-12  Score=59.65  Aligned_cols=40  Identities=23%  Similarity=0.467  Sum_probs=35.4

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGP   41 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSS
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCC
Confidence            3667788999999999999999999999999999988886

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3.5e-13  Score=63.06  Aligned_cols=40  Identities=38%  Similarity=0.552  Sum_probs=37.2

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPS   41 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCS
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCC
Confidence            3677899999999999999999999999999999999987

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4e-13  Score=62.88  Aligned_cols=40  Identities=33%  Similarity=0.463  Sum_probs=37.2

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPS   41 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCS
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCC
Confidence            3677889999999999999999999999999999999987

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.4e-12  Score=59.53  Aligned_cols=40  Identities=33%  Similarity=0.543  Sum_probs=35.5

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGP   41 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCS
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCC
Confidence            4667788999999999999999999999999999998886

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.28  E-value=3.1e-13  Score=63.24  Aligned_cols=40  Identities=35%  Similarity=0.544  Sum_probs=37.4

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPS   41 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCS
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            4677899999999999999999999999999999999987

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2e-12  Score=60.40  Aligned_cols=43  Identities=40%  Similarity=0.678  Sum_probs=35.5

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++
T Consensus         3 H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SG-SSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CC-CCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             Cc-cCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            55 56888888888888888888888888888888888888863

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=3.8e-13  Score=62.95  Aligned_cols=40  Identities=23%  Similarity=0.309  Sum_probs=37.2

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPS   41 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCS
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            3677899999999999999999999999999999999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=7.4e-13  Score=61.96  Aligned_cols=39  Identities=31%  Similarity=0.457  Sum_probs=36.6

Q ss_pred             HHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        94 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      |+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPS   41 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCC
Confidence            567789999999999999999999999999999999987

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4e-13  Score=62.83  Aligned_cols=40  Identities=30%  Similarity=0.514  Sum_probs=37.2

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPS   41 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSS
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4677889999999999999999999999999999999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=3.6e-13  Score=63.01  Aligned_cols=40  Identities=40%  Similarity=0.586  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|++|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPS   41 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCC
Confidence            3677899999999999999999999999999999999987

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.28  E-value=9.1e-12  Score=63.81  Aligned_cols=53  Identities=32%  Similarity=0.722  Sum_probs=30.1

Q ss_pred             ccceeeeCC--CCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhh
Q psy6628           7 IHRVVFTCQ--VCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHI   66 (132)
Q Consensus         7 ~~~~~~~C~--~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~   66 (132)
                      .++++|.|+  .|++.|.....|..|+++|.+   +.+ |.|+   .|++.|.....|..|+
T Consensus        15 ~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~---~~~-~~C~---~C~~~f~~~~~l~~H~   69 (73)
T 1f2i_G           15 PKMRPYACPVESCDRRFSRSDELTRHIRIHTG---QKP-FQCR---ICMRNFSRSDHLTTHI   69 (73)
T ss_dssp             CCCCCEECSSTTBCCEESSHHHHHHHHHHHHC---CCC-EECT---TTCCEESCHHHHHHHH
T ss_pred             CCCCccCCcCCCCCCccCCHHHHHHHHHhhCC---CCC-eECC---CCCchhCCHHHHHHHH
Confidence            345556665  366666666666666665554   333 5665   5666666665565555

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=3.7e-13  Score=62.94  Aligned_cols=40  Identities=30%  Similarity=0.483  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPS   41 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSS
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCC
Confidence            4677899999999999999999999999999999999987

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.4e-12  Score=60.17  Aligned_cols=40  Identities=33%  Similarity=0.475  Sum_probs=33.9

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHS   41 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBT
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCC
Confidence            3667788888999999999999999999998888888876

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=7e-13  Score=62.04  Aligned_cols=39  Identities=26%  Similarity=0.348  Sum_probs=36.7

Q ss_pred             HHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        94 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      |+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   41 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTS   41 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCC
Confidence            667889999999999999999999999999999999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=3.9e-13  Score=62.91  Aligned_cols=40  Identities=23%  Similarity=0.267  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPS   41 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCS
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCC
Confidence            4677899999999999999999999999999999999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=6.6e-13  Score=62.12  Aligned_cols=39  Identities=31%  Similarity=0.479  Sum_probs=36.7

Q ss_pred             HHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        94 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      |+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPS   41 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSS
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCC
Confidence            667889999999999999999999999999999999986

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3.8e-13  Score=62.32  Aligned_cols=42  Identities=26%  Similarity=0.496  Sum_probs=32.3

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCC
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE  107 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~  107 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|+
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SG-SSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SC-CSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             Cc-cccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            55 5677778888888888888888888888888877887774

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.27  E-value=4.8e-13  Score=62.56  Aligned_cols=40  Identities=35%  Similarity=0.586  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPS   41 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCC
Confidence            4677899999999999999999999999999999999987

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3.9e-13  Score=62.90  Aligned_cols=40  Identities=40%  Similarity=0.582  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~   41 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPS   41 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSS
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCc
Confidence            4677899999999999999999999999999999999987

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2.8e-12  Score=59.90  Aligned_cols=40  Identities=28%  Similarity=0.460  Sum_probs=35.6

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSS   41 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            3667788999999999999999999999999999999886

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2.3e-12  Score=59.00  Aligned_cols=39  Identities=31%  Similarity=0.485  Sum_probs=34.0

Q ss_pred             HHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        94 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      |+.+|.+++||.|++|++.|...+.|..|+++|.+++||
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   40 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS   40 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCC
Confidence            566788889999999999999999999999988888886

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=6.2e-13  Score=62.20  Aligned_cols=39  Identities=31%  Similarity=0.470  Sum_probs=36.7

Q ss_pred             HHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        94 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      |+.+|.+++||.|++|++.|...+.|..|+++|.+++||
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPS   41 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCS
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCC
Confidence            667889999999999999999999999999999999987

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=5.7e-13  Score=62.37  Aligned_cols=39  Identities=38%  Similarity=0.634  Sum_probs=36.6

Q ss_pred             HHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        94 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      |+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPS   41 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCC
Confidence            567789999999999999999999999999999999987

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3.3e-13  Score=62.55  Aligned_cols=42  Identities=21%  Similarity=0.458  Sum_probs=31.9

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCC
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE  107 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~  107 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|.
T Consensus         3 H~-~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            3 SG-SSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CC-CCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CC-cCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            54 5677777788888888888888888888888777777763

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=4.6e-13  Score=62.63  Aligned_cols=40  Identities=25%  Similarity=0.242  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCS   41 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSS
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCC
Confidence            4677899999999999999999999999999999999986

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=7.7e-13  Score=61.88  Aligned_cols=40  Identities=30%  Similarity=0.491  Sum_probs=37.1

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.++++|.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPS   41 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSS
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCC
Confidence            3677889999999999999999999999999999999987

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=7.1e-12  Score=57.68  Aligned_cols=41  Identities=15%  Similarity=0.234  Sum_probs=34.2

Q ss_pred             hccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        68 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      ..|+++++|.|..|++.|.....|..|+.+|++++||.|++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            34777888888888888888888888888888888888864

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=4.7e-13  Score=62.60  Aligned_cols=40  Identities=30%  Similarity=0.512  Sum_probs=37.5

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPS   41 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCS
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCC
Confidence            4778899999999999999999999999999999999986

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=5e-13  Score=61.93  Aligned_cols=42  Identities=19%  Similarity=0.363  Sum_probs=33.5

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCC
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE  107 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~  107 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+.+|.+++||.|+
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            3 SG-SSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CC-SCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             cc-cccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            55 5677888888888888888888888888888888888774

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=3.5e-12  Score=59.01  Aligned_cols=40  Identities=23%  Similarity=0.403  Sum_probs=32.8

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGP   41 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCT
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCc
Confidence            3566778888888888888888888888888888888876

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=4.4e-12  Score=59.24  Aligned_cols=40  Identities=40%  Similarity=0.713  Sum_probs=33.8

Q ss_pred             hccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCC
Q psy6628          68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE  107 (132)
Q Consensus        68 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~  107 (132)
                      ..|+++++|.|..|++.|.....|..|+..|.+++||.|+
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            5 SSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5678888888888888888888888888888888888885

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.6e-12  Score=59.43  Aligned_cols=40  Identities=25%  Similarity=0.458  Sum_probs=33.5

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGP   41 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCC
Confidence            3667788888888888888888888888888888888876

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.26  E-value=7.9e-13  Score=61.83  Aligned_cols=39  Identities=23%  Similarity=0.445  Sum_probs=36.6

Q ss_pred             HHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        94 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      |+++|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPS   41 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCC
Confidence            567889999999999999999999999999999999987

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=8.1e-13  Score=61.80  Aligned_cols=39  Identities=33%  Similarity=0.623  Sum_probs=36.3

Q ss_pred             HHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        94 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      |+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPS   41 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCC
Confidence            566788999999999999999999999999999999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=3.8e-13  Score=62.93  Aligned_cols=40  Identities=28%  Similarity=0.488  Sum_probs=37.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPS   41 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSS
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCC
Confidence            4677889999999999999999999999999999999987

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=1.3e-12  Score=60.56  Aligned_cols=40  Identities=20%  Similarity=0.312  Sum_probs=31.0

Q ss_pred             hccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCC
Q psy6628          68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE  107 (132)
Q Consensus        68 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~  107 (132)
                      ..|.++++|.|..|++.|.....|..|+.+|.+++||.|+
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            5 SSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            4577777888888888888888888888888888887774

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=3.3e-12  Score=58.46  Aligned_cols=39  Identities=33%  Similarity=0.446  Sum_probs=35.7

Q ss_pred             HHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        94 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      |+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   40 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS   40 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSS
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCC
Confidence            566788999999999999999999999999999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=1e-12  Score=61.47  Aligned_cols=40  Identities=18%  Similarity=0.169  Sum_probs=37.1

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNS   41 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCC
Confidence            3667889999999999999999999999999999999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=5.5e-13  Score=62.39  Aligned_cols=40  Identities=33%  Similarity=0.502  Sum_probs=37.2

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPS   41 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCS
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCC
Confidence            3677899999999999999999999999999999999987

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=6.5e-12  Score=58.06  Aligned_cols=39  Identities=23%  Similarity=0.313  Sum_probs=34.2

Q ss_pred             HHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        94 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      |+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGP   41 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCC
Confidence            556788889999999999999999999999999988886

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.25  E-value=4.6e-12  Score=57.95  Aligned_cols=39  Identities=33%  Similarity=0.497  Sum_probs=35.1

Q ss_pred             HHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        94 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      |+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~   40 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS   40 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCC
Confidence            456788899999999999999999999999999999887

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=4.6e-13  Score=62.62  Aligned_cols=43  Identities=35%  Similarity=0.621  Sum_probs=36.2

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCC
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE  107 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~  107 (132)
                      .|+ ..|+++++|.|..|++.|.....|..|+..|.+++||.|+
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            2 SSG-SSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCC-CSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             Ccc-cCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            355 5688888889999999998888898998888888888885

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.8e-12  Score=59.90  Aligned_cols=40  Identities=35%  Similarity=0.625  Sum_probs=36.2

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   41 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPS   41 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCC
Confidence            3677888999999999999999999999999999999886

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=4e-12  Score=58.18  Aligned_cols=39  Identities=38%  Similarity=0.566  Sum_probs=34.0

Q ss_pred             HHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        94 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      |+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   40 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS   40 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSST
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            456788889999999999999999999999999888886

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=1e-12  Score=61.41  Aligned_cols=39  Identities=31%  Similarity=0.532  Sum_probs=36.6

Q ss_pred             HHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        94 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      |+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPS   41 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCC
Confidence            567889999999999999999999999999999999987

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=3.8e-12  Score=59.46  Aligned_cols=42  Identities=31%  Similarity=0.448  Sum_probs=33.6

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcC-CCCccCC
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTG-EKPYACE  107 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~-~~~~~C~  107 (132)
                      |+ ..|.++++|.|..|++.|.....|..|+.+|.+ ++||.|+
T Consensus         3 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SG-SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CC-CCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             Cc-cccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            44 567778888888888888888888888888888 8888875

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.3e-12  Score=61.10  Aligned_cols=39  Identities=26%  Similarity=0.377  Sum_probs=36.5

Q ss_pred             HHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        94 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      |+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLS   41 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCC
Confidence            567789999999999999999999999999999999987

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3.2e-12  Score=59.13  Aligned_cols=40  Identities=25%  Similarity=0.379  Sum_probs=34.8

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   41 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGP   41 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCC
Confidence            3667788899999999999999999999999999888886

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.24  E-value=2.2e-12  Score=62.43  Aligned_cols=51  Identities=16%  Similarity=0.150  Sum_probs=44.3

Q ss_pred             ccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCcc
Q psy6628          54 RVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA  105 (132)
Q Consensus        54 ~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~  105 (132)
                      +.|.....|..|+ ..|+++++|.|..|++.|.....|..|+.+|++++||.
T Consensus         4 k~~~~~~~l~~h~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            4 KRAKHPPGTEKPR-SRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCSCSSCCCCCH-HHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             cccCCCcchhhHH-HhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            4566667788887 77999999999999999999999999999999998873

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3.7e-12  Score=59.45  Aligned_cols=39  Identities=31%  Similarity=0.457  Sum_probs=29.4

Q ss_pred             HHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        94 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      |+.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPS   41 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCC
Confidence            556677777777777777777777777777777777765

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=1.1e-12  Score=61.37  Aligned_cols=39  Identities=26%  Similarity=0.357  Sum_probs=36.5

Q ss_pred             HHHHhcCCCCccCCCchhccccchHHHHHHHhhhh-hccC
Q psy6628          94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQ-MYEQ  132 (132)
Q Consensus        94 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~-~~~~  132 (132)
                      |+.+|.+++||.|.+|++.|...+.|..|+++|.+ ++||
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSG   42 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTS
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCC
Confidence            66788999999999999999999999999999999 8886

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.7e-12  Score=60.90  Aligned_cols=40  Identities=30%  Similarity=0.462  Sum_probs=36.9

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHH-hhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR-SLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|++ .|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~   42 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPS   42 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSS
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCC
Confidence            36678899999999999999999999999999 99999986

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=7.4e-13  Score=61.93  Aligned_cols=40  Identities=28%  Similarity=0.406  Sum_probs=37.1

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|++|++.|...+.|..|++.|.+++||
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPS   41 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSS
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCC
Confidence            3677889999999999999999999999999999999986

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=1.1e-12  Score=67.82  Aligned_cols=66  Identities=15%  Similarity=0.113  Sum_probs=57.3

Q ss_pred             HHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhc
Q psy6628          61 MLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus        61 ~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      .|..|+ ..+.+.+++.|..|+..|. ...|..|+ .+.+++|+.|+.|++.|. ...|..|+.++.+++
T Consensus         4 ~L~~H~-~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            4 GSSGHE-ETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CCSCCC-CCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTBS
T ss_pred             HHHhhC-cccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCCc
Confidence            356776 6788999999999999994 88999999 899999999999999887 589999999887754

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=1.4e-11  Score=57.45  Aligned_cols=41  Identities=34%  Similarity=0.577  Sum_probs=34.7

Q ss_pred             hccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        68 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      ..|.++++|.|..|++.|.....|..|+..|.+++||.|.+
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            45778888899999999998889999988888888888863

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=8.3e-12  Score=58.74  Aligned_cols=42  Identities=29%  Similarity=0.481  Sum_probs=38.2

Q ss_pred             hccCCCCCccCC--cccccccChhhHHHHHHHhcCCCCccCCCc
Q psy6628          68 RDHQKEKPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYACEFC  109 (132)
Q Consensus        68 ~~~~~~~~~~c~--~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  109 (132)
                      ..|+++++|.|.  .|++.|.....|..|+.+|.+++||.|.+|
T Consensus         5 ~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            5 SSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            568889999998  899999999999999999999999999887

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=8e-12  Score=58.05  Aligned_cols=41  Identities=37%  Similarity=0.638  Sum_probs=34.0

Q ss_pred             hccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        68 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      ..|+++++|.|..|++.|.....|..|+.+|.+++||.|++
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            45778888888888888888888888888888888888864

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.1e-11  Score=57.33  Aligned_cols=40  Identities=30%  Similarity=0.483  Sum_probs=36.3

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|+.+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGP   41 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCC
Confidence            3677889999999999999999999999999999999987

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.21  E-value=5.1e-12  Score=56.89  Aligned_cols=33  Identities=24%  Similarity=0.476  Sum_probs=16.0

Q ss_pred             CCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628         100 GEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus       100 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         3 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   35 (39)
T 1njq_A            3 PPRSYTCSFCKREFRSAQALGGHMNVHRRDRAR   35 (39)
T ss_dssp             CSSSEECTTTCCEESSHHHHHHHHHTTCCSCTT
T ss_pred             CCCceECCCCCcccCCHHHHHHHHHHcCCCccc
Confidence            344455555555555545555554444444443

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=2.6e-12  Score=57.18  Aligned_cols=35  Identities=17%  Similarity=0.428  Sum_probs=27.2

Q ss_pred             HhcCCCCccCCCchhccccchHHHHHHHhhhhhcc
Q psy6628          97 VHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYE  131 (132)
Q Consensus        97 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  131 (132)
                      +|.+++||.|.+|++.|...+.|..|++.|++++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            46677888888888888888888888888777765

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=4.4e-12  Score=59.25  Aligned_cols=38  Identities=24%  Similarity=0.350  Sum_probs=35.2

Q ss_pred             HHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          95 SRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        95 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +..|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPS   41 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCS
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCC
Confidence            35678899999999999999999999999999999987

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1e-11  Score=62.43  Aligned_cols=54  Identities=19%  Similarity=0.324  Sum_probs=39.0

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCCCCCccCC-cccccccChhhHHHHHHHhcCCCC
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS-QCSKSFFSKYDHKIHSRVHTGEKP  103 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~-~C~~~~~~~~~l~~h~~~h~~~~~  103 (132)
                      |.|.   .|++.|. ...|..|+ .. .+++||.|. .|++.|...+.|..|+.+|...++
T Consensus        11 ~~C~---~C~k~f~-~~~L~~H~-~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A           11 QPCT---YCTKEFV-FDTIQSHQ-YQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             EECS---SSCCEEE-HHHHHHHH-HH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             eecc---ccCCccC-HHHHHHHH-HH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            7777   7777777 77777776 44 677777777 777777777777777777655443

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=5.8e-12  Score=58.82  Aligned_cols=38  Identities=29%  Similarity=0.452  Sum_probs=35.2

Q ss_pred             HHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          95 SRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        95 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +.+|.++++|.|.+|++.|...+.|..|++.|.+++||
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPS   41 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCC
Confidence            35688999999999999999999999999999999987

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1.5e-11  Score=55.94  Aligned_cols=38  Identities=34%  Similarity=0.698  Sum_probs=25.8

Q ss_pred             ccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccC
Q psy6628          69 DHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC  106 (132)
Q Consensus        69 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C  106 (132)
                      .|+++++|.|..|++.|.....|..|+.+|.+++||.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            45666667777777777777777777766766666665

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.19  E-value=6.9e-12  Score=54.98  Aligned_cols=34  Identities=29%  Similarity=0.547  Sum_probs=28.4

Q ss_pred             hcCCCCccCCCchhccccchHHHHHHHhhhhhcc
Q psy6628          98 HTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYE  131 (132)
Q Consensus        98 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  131 (132)
                      |.+++||.|.+|++.|...+.|..|++.|++++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            5678888888888888888888888888888775

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=4.5e-12  Score=57.72  Aligned_cols=36  Identities=25%  Similarity=0.434  Sum_probs=34.0

Q ss_pred             HhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          97 VHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        97 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +|.+++||.|++|++.|...+.|..|++.|.+++||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   39 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS   39 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCS
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCc
Confidence            578899999999999999999999999999999987

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=9.1e-12  Score=57.32  Aligned_cols=36  Identities=22%  Similarity=0.386  Sum_probs=34.0

Q ss_pred             HhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          97 VHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        97 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      .|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   39 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSG   39 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCS
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCc
Confidence            478899999999999999999999999999999987

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.16  E-value=7.3e-12  Score=55.65  Aligned_cols=36  Identities=36%  Similarity=0.619  Sum_probs=28.3

Q ss_pred             HHHHhcCCCCccCCCchhccccchHHHHHHHhhhhh
Q psy6628          94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQM  129 (132)
Q Consensus        94 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  129 (132)
                      |+.+|.+++||.|++|++.|...+.|..|++.|.++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            556677888888888888888888888888877653

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.16  E-value=1.1e-11  Score=54.38  Aligned_cols=34  Identities=21%  Similarity=0.577  Sum_probs=27.9

Q ss_pred             hcCCCCccCCCchhccccchHHHHHHHhhhhhcc
Q psy6628          98 HTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYE  131 (132)
Q Consensus        98 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  131 (132)
                      |.+++||.|.+|++.|...+.|..|++.|.+++|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            5677888888888888888888888888887765

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.4e-12  Score=59.35  Aligned_cols=38  Identities=29%  Similarity=0.561  Sum_probs=35.1

Q ss_pred             HHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          95 SRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        95 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      ..+|.+++||.|.+|++.|...+.|..|+++|.+++||
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSG   41 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCC
T ss_pred             CCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCC
Confidence            34678899999999999999999999999999999987

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=6e-12  Score=58.73  Aligned_cols=38  Identities=37%  Similarity=0.591  Sum_probs=35.2

Q ss_pred             HHHhcCCCCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628          95 SRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        95 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +.+|.+++||.|.+|++.|...+.|..|++.|.+++||
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPS   41 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCC
Confidence            45688999999999999999999999999999999987

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.13  E-value=2.3e-11  Score=60.82  Aligned_cols=39  Identities=23%  Similarity=0.450  Sum_probs=30.6

Q ss_pred             cCCCCCccCCc--ccccccChhhHHHHH-HHhcCCCCccCCC
Q psy6628          70 HQKEKPYQCSQ--CSKSFFSKYDHKIHS-RVHTGEKPYACEF  108 (132)
Q Consensus        70 ~~~~~~~~c~~--C~~~~~~~~~l~~h~-~~h~~~~~~~C~~  108 (132)
                      .+++|||.|..  |+++|...+.|..|+ .+|++++||.|..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            66788888864  888888888888886 5788888887754

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.13  E-value=1.2e-10  Score=59.40  Aligned_cols=54  Identities=33%  Similarity=0.663  Sum_probs=28.0

Q ss_pred             cceeeeCCC--CccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhh
Q psy6628           8 HRVVFTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHI   66 (132)
Q Consensus         8 ~~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~   66 (132)
                      ..++|.|..  |++.|.....|..|+++|.+   +.+ |.|... .|++.|.....|..|+
T Consensus        14 ~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~---~~~-~~C~~~-~C~k~f~~~~~l~~H~   69 (72)
T 2epa_A           14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTG---EKP-FSCSWK-GCERRFARSDELSRHR   69 (72)
T ss_dssp             CCCCEECSSTTTCCEESSHHHHHHHHHHHSS---SCS-EECCCT-TCCCEESSHHHHHHHT
T ss_pred             ccCceeCCCCCCccccCCHHHHHHHHHhcCC---CCC-ccCCCC-CCCcccCCHHHHHhHh
Confidence            344555555  55555555555555555544   333 555300 2555555555555554

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=99.13  E-value=3.2e-11  Score=52.24  Aligned_cols=31  Identities=32%  Similarity=0.533  Sum_probs=21.2

Q ss_pred             CCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628         102 KPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +||.|.+|++.|...+.|..|+++|.+++||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            4566777777777777777777776666665

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.13  E-value=9e-11  Score=56.60  Aligned_cols=45  Identities=29%  Similarity=0.477  Sum_probs=25.3

Q ss_pred             cccceeeeCCCCccccCChhHHHHHHH-hhcCCCCCCCccccCCCCCCccccc
Q psy6628           6 NIHRVVFTCQVCSKIFSYENGLKAHVR-NKHGSSEERPRFKCEGRGECDRVFT   57 (132)
Q Consensus         6 ~~~~~~~~C~~C~~~f~~~~~l~~h~~-~~~~~~~~~~~~~c~~~~~c~~~~~   57 (132)
                      +.++++|.|++|++.|.....|..|++ +|.+   +.+ |.|+   .|++.|.
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~---~k~-~~C~---~C~k~F~   52 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTS---ERP-HKCQ---VWVSGPS   52 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCC---CCC-CCSS---SSCCSSC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCC---CCC-ccCC---CCCCCCC
Confidence            344555666666666666666666654 4544   333 5665   5655554

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.10  E-value=4.5e-11  Score=53.33  Aligned_cols=35  Identities=23%  Similarity=0.489  Sum_probs=28.1

Q ss_pred             hcCCCCccCC--CchhccccchHHHHHHHhhhhhccC
Q psy6628          98 HTGEKPYACE--FCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        98 h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      |.+++||.|.  .|++.|...+.|..|++.|.+++||
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4567888888  4888888888888888888888876

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=7.2e-11  Score=52.73  Aligned_cols=33  Identities=12%  Similarity=0.164  Sum_probs=26.5

Q ss_pred             hcCCCCccCCC--chhccccchHHHHHHHhhhhhc
Q psy6628          98 HTGEKPYACEF--CPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus        98 h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      +.+++||+|++  |++.|...+.|..|+++|.+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~~   38 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTALD   38 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            46788888876  8888888888888888887653

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.04  E-value=1.9e-10  Score=51.55  Aligned_cols=37  Identities=24%  Similarity=0.376  Sum_probs=31.4

Q ss_pred             cCCCCCccCCcccccccChhhHHHHHHHhcCCCCccC
Q psy6628          70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC  106 (132)
Q Consensus        70 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C  106 (132)
                      |+++++|.|..|++.|...+.|..|+.+|.+++||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            4567889999999999999999999999998888865

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=1.1e-10  Score=51.66  Aligned_cols=34  Identities=21%  Similarity=0.430  Sum_probs=26.8

Q ss_pred             HhcCCCCccCCCchhccccc-hHHHHHHHhhhhhc
Q psy6628          97 VHTGEKPYACEFCPLTFRHS-SHLFRHRRSLHQMY  130 (132)
Q Consensus        97 ~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~~~~~~  130 (132)
                      +|.+++||.|++|++.|... +.|..|++.|.+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            46677888888888888888 88888888877654

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.02  E-value=3e-10  Score=52.56  Aligned_cols=39  Identities=21%  Similarity=0.376  Sum_probs=28.6

Q ss_pred             ccccceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccC
Q psy6628           5 HNIHRVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCE   47 (132)
Q Consensus         5 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~   47 (132)
                      -+.++++|.|.+|++.|.....|..|+++|.+   +.+ |.|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~---~~~-~~C~   42 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG---SVG-KSGP   42 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSC---CCC-CCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccC---CCC-CCCc
Confidence            35567778888888888888888888877766   444 7777

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=1.2e-10  Score=51.23  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=25.6

Q ss_pred             HhcCCCCccCCCchhccccchHHHHHHHhhhhhc
Q psy6628          97 VHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus        97 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      +|.+++||.|.+|++.|...+.|..|++.|.+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            3566778888888888888888888887776653

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=1.3e-10  Score=51.14  Aligned_cols=34  Identities=24%  Similarity=0.428  Sum_probs=26.2

Q ss_pred             HhcCCCCccCCCchhccccchHHHHHHHhhhhhc
Q psy6628          97 VHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus        97 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      .|.+++||.|.+|++.|...+.|..|++.|.+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            3567788888888888888888888887777654

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.99  E-value=3.1e-10  Score=53.30  Aligned_cols=29  Identities=31%  Similarity=0.584  Sum_probs=15.0

Q ss_pred             cceeeeCCCCccccCChhHHHHHHHhhcC
Q psy6628           8 HRVVFTCQVCSKIFSYENGLKAHVRNKHG   36 (132)
Q Consensus         8 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~   36 (132)
                      ++++|.|.+|++.|.....|..|+++|.+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (48)
T 2epr_A            9 TRKQVACEICGKIFRDVYHLNRHKLSHSG   37 (48)
T ss_dssp             CCCSEEETTTTEEESSHHHHHHHGGGSCS
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHHhcCC
Confidence            44455555555555555555555555443

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=5.9e-11  Score=55.72  Aligned_cols=39  Identities=41%  Similarity=0.632  Sum_probs=35.3

Q ss_pred             HHHHhcCCCCccCC--CchhccccchHHHHHHHhhhhhccC
Q psy6628          94 HSRVHTGEKPYACE--FCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus        94 h~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      |..+|.+++||.|.  +|++.|...+.|..|+++|.+++||
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   43 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPS   43 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            34568899999998  8999999999999999999999987

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=2.1e-10  Score=50.37  Aligned_cols=33  Identities=18%  Similarity=0.289  Sum_probs=24.8

Q ss_pred             hcCCCCccCCCchhccccchHHHHHHHhhhhhc
Q psy6628          98 HTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus        98 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      |.++++|.|.+|++.|...+.|..|++.|.+++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            566777888888888888888888877776653

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=1.8e-10  Score=50.67  Aligned_cols=34  Identities=18%  Similarity=0.319  Sum_probs=26.0

Q ss_pred             HhcCCCCccCCCchhccccchHHHHHHHhhhhhc
Q psy6628          97 VHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus        97 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      .|.+++||.|.+|++.|...+.|..|++.|.+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            3566788888888888888888888888776653

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=9e-11  Score=52.09  Aligned_cols=32  Identities=19%  Similarity=0.283  Sum_probs=24.5

Q ss_pred             HhcCCCCccCCCchhccccchHHHHH-HHhhhh
Q psy6628          97 VHTGEKPYACEFCPLTFRHSSHLFRH-RRSLHQ  128 (132)
Q Consensus        97 ~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~~~~  128 (132)
                      +|.+++||+|.+|++.|...+.|..| ++.|.+
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            46677888888888888888888888 666654

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=2.9e-10  Score=49.98  Aligned_cols=33  Identities=24%  Similarity=0.465  Sum_probs=25.5

Q ss_pred             hcCCCCccCCCchhccccchHHHHHHHhhhhhc
Q psy6628          98 HTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus        98 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      +.+++||.|++|++.|...+.|..|+++|.+++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            556778888888888888888888888777653

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.93  E-value=2.5e-10  Score=53.69  Aligned_cols=32  Identities=28%  Similarity=0.552  Sum_probs=17.2

Q ss_pred             hcCCCCccCCCchhccccchHHHHHHH-hhhhh
Q psy6628          98 HTGEKPYACEFCPLTFRHSSHLFRHRR-SLHQM  129 (132)
Q Consensus        98 h~~~~~~~C~~C~~~f~~~~~l~~H~~-~~~~~  129 (132)
                      |.+++||.|.+|++.|...+.|..|++ .|.++
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            445555555555555555555555555 44443

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.92  E-value=1.3e-09  Score=54.55  Aligned_cols=35  Identities=20%  Similarity=0.343  Sum_probs=29.1

Q ss_pred             hcCCCCccCCC--chhccccchHHHHHH-HhhhhhccC
Q psy6628          98 HTGEKPYACEF--CPLTFRHSSHLFRHR-RSLHQMYEQ  132 (132)
Q Consensus        98 h~~~~~~~C~~--C~~~f~~~~~l~~H~-~~~~~~~~~  132 (132)
                      ..+++||+|..  |++.|+..++|..|+ ++|.++|||
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~   59 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPA   59 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCc
Confidence            46789999965  999999999999997 578888886

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.90  E-value=3.5e-11  Score=51.72  Aligned_cols=31  Identities=26%  Similarity=0.500  Sum_probs=22.3

Q ss_pred             CCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628         102 KPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +||.|.+|++.|...+.|..|+++|.+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            4677777777777777777777777777664

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=1.2e-09  Score=48.14  Aligned_cols=36  Identities=25%  Similarity=0.407  Sum_probs=32.1

Q ss_pred             hccCCCCCccCCcccccccChhhHHHHHHHhcCCCC
Q psy6628          68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP  103 (132)
Q Consensus        68 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~  103 (132)
                      ..|+++++|.|..|++.|.....|..|+.+|++++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            357889999999999999999999999999998875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.89  E-value=2e-09  Score=46.32  Aligned_cols=32  Identities=19%  Similarity=0.340  Sum_probs=27.1

Q ss_pred             CCccCCcccccccChhhHHHHHHHhcCCCCcc
Q psy6628          74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA  105 (132)
Q Consensus        74 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~  105 (132)
                      +||.|..|++.|...+.|..|+.+|.+++||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            47888888888888888888888888888874

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.89  E-value=1.6e-09  Score=47.11  Aligned_cols=34  Identities=26%  Similarity=0.449  Sum_probs=29.6

Q ss_pred             cCCCCCccCCcccccccChhhHHHHHHHhcCCCC
Q psy6628          70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP  103 (132)
Q Consensus        70 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~  103 (132)
                      |+++++|.|..|++.|.....|..|+..|.+++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            6778899999999999999999999999888764

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.89  E-value=1.5e-10  Score=54.24  Aligned_cols=38  Identities=16%  Similarity=0.217  Sum_probs=28.7

Q ss_pred             HHHHHhcCCCCccCC--CchhccccchHHHHHHHhhhhhc
Q psy6628          93 IHSRVHTGEKPYACE--FCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      .+...|.+++||.|.  .|++.|...+.|..|++.|.+++
T Consensus         8 ~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            344557788888885  68888888888888888877764

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.89  E-value=8.8e-10  Score=48.75  Aligned_cols=33  Identities=24%  Similarity=0.319  Sum_probs=25.0

Q ss_pred             hcCCCCccCCC--chhccccchHHHHHHHhhhhhc
Q psy6628          98 HTGEKPYACEF--CPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus        98 h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      |.+++||.|.+  |++.|...+.|..|+++|.+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            45677888874  8888888888888888777654

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.88  E-value=1.8e-09  Score=46.98  Aligned_cols=34  Identities=26%  Similarity=0.552  Sum_probs=29.4

Q ss_pred             cCCCCCccCCcccccccChhhHHHHHHHhcCCCC
Q psy6628          70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP  103 (132)
Q Consensus        70 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~  103 (132)
                      |+++++|.|..|++.|.....|..|+..|.+++|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            6778889999999999999999999998888764

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.88  E-value=1.3e-09  Score=45.60  Aligned_cols=30  Identities=30%  Similarity=0.601  Sum_probs=24.9

Q ss_pred             CCccCCCchhccccchHHHHHHHhhhhhcc
Q psy6628         102 KPYACEFCPLTFRHSSHLFRHRRSLHQMYE  131 (132)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  131 (132)
                      +||.|.+|++.|...+.|..|++.|++++|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            478888888888888888888888887764

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.87  E-value=1.2e-10  Score=61.89  Aligned_cols=56  Identities=16%  Similarity=0.280  Sum_probs=45.2

Q ss_pred             hccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHhhh
Q psy6628          68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLH  127 (132)
Q Consensus        68 ~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~  127 (132)
                      ..|+++++|.|..|++.|.....|..|+.+|.+++||.|..|.+    ...|..|.+.+.
T Consensus        18 ~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~----~~~~~~~~~~~~   73 (88)
T 1x6f_A           18 GPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER----RKQLLSKQKYAD   73 (88)
T ss_dssp             CSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC----CCCCCCCCCCCC
T ss_pred             cccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh----HHHHHhhhcccc
Confidence            45889999999999999999999999999999999999987654    333444444443

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.84  E-value=2.6e-09  Score=47.07  Aligned_cols=36  Identities=28%  Similarity=0.520  Sum_probs=31.0

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcCC
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGE  101 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~  101 (132)
                      |+ ..|+++++|.|..|++.|.....|..|+..|.++
T Consensus         2 H~-~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 ST-RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CS-STTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CC-CcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            44 5688899999999999999999999999988764

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.84  E-value=1.2e-09  Score=45.72  Aligned_cols=30  Identities=27%  Similarity=0.635  Sum_probs=23.5

Q ss_pred             CCCccCCCchhccccchHHHHHHHhhhhhc
Q psy6628         101 EKPYACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus       101 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      ++||.|.+|++.|...+.|..|++.|.+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            467888888888888888888888777653

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.83  E-value=1.7e-09  Score=44.94  Aligned_cols=29  Identities=31%  Similarity=0.437  Sum_probs=23.4

Q ss_pred             CCccCCCchhccccchHHHHHHHhhhhhc
Q psy6628         102 KPYACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      +||.|++|++.|...+.|..|++.|.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            47888888888888888888888877654

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.82  E-value=2.2e-09  Score=44.52  Aligned_cols=29  Identities=34%  Similarity=0.665  Sum_probs=21.8

Q ss_pred             CCccCCCchhccccchHHHHHHHhhhhhc
Q psy6628         102 KPYACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      +||.|.+|++.|...+.|..|++.|.+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            46778888888888888888877776653

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.81  E-value=7e-10  Score=58.88  Aligned_cols=52  Identities=15%  Similarity=0.353  Sum_probs=36.0

Q ss_pred             CCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcC
Q psy6628          40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTG  100 (132)
Q Consensus        40 ~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~  100 (132)
                      +.+ |.|+   .|++.|.....|..|+ ..|+++++|.|..|.    ....|..|++.|.+
T Consensus        23 ~kp-y~C~---~C~k~F~~~~~L~~H~-~~Ht~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           23 NST-YQCK---HCDSKLQSTAELTSHL-NIHNEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CSC-EECS---SSCCEESSHHHHHHHH-HHHHHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             CCC-CcCC---CCCCEeCCHHHHHHHH-HHhCCCCCcccchhh----hHHHHHhhhccccc
Confidence            444 8888   7888888888888887 668888888886654    33345556665554

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.80  E-value=2.8e-09  Score=44.10  Aligned_cols=29  Identities=21%  Similarity=0.259  Sum_probs=23.1

Q ss_pred             CCccCCCchhccccchHHHHHHHhhhhhc
Q psy6628         102 KPYACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      +||.|++|++.|...+.|..|++.|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            47888888888888888888888877653

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.80  E-value=3.8e-09  Score=44.93  Aligned_cols=30  Identities=30%  Similarity=0.751  Sum_probs=24.4

Q ss_pred             CCCccCC--CchhccccchHHHHHHHhhhhhc
Q psy6628         101 EKPYACE--FCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus       101 ~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      ++||.|.  .|++.|...+.|..|+++|.+++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            4688888  78888888888888888887754

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.79  E-value=2.7e-09  Score=44.20  Aligned_cols=29  Identities=31%  Similarity=0.427  Sum_probs=22.8

Q ss_pred             CCccCCCchhccccchHHHHHHHhhhhhc
Q psy6628         102 KPYACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      +||.|.+|++.|...+.|..|++.|.+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            46788888888888888888888877664

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.79  E-value=5.7e-09  Score=46.22  Aligned_cols=35  Identities=20%  Similarity=0.540  Sum_probs=31.4

Q ss_pred             cCCCCCccCC--cccccccChhhHHHHHHHhcCCCCc
Q psy6628          70 HQKEKPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPY  104 (132)
Q Consensus        70 ~~~~~~~~c~--~C~~~~~~~~~l~~h~~~h~~~~~~  104 (132)
                      |+++++|.|.  .|++.|.....|..|+..|.+++||
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4678899999  5999999999999999999999887

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.25  E-value=7.8e-10  Score=46.34  Aligned_cols=30  Identities=33%  Similarity=0.523  Sum_probs=24.9

Q ss_pred             CCCccCCCchhccccchHHHHHHHhhhhhc
Q psy6628         101 EKPYACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus       101 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      ++||.|.+|++.|...+.|..|++.|++++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            467889899999998888988988887764

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.25  E-value=7.9e-10  Score=46.04  Aligned_cols=29  Identities=31%  Similarity=0.539  Sum_probs=24.0

Q ss_pred             CCccCCCchhccccchHHHHHHHhhhhhc
Q psy6628         102 KPYACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      +||.|.+|++.|...+.|..|++.|.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            47888888888888888888888887764

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.75  E-value=4.6e-09  Score=52.54  Aligned_cols=40  Identities=15%  Similarity=0.251  Sum_probs=29.5

Q ss_pred             cCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCch
Q psy6628          70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCP  110 (132)
Q Consensus        70 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~  110 (132)
                      +.+++||.|..|++.|.....|..|+++|+++. ..+.++.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~-~~~~~~~   47 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS-LQLGYID   47 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS-CCCCSCC
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc-ccccccc
Confidence            566788888888888888888888888887753 3344443

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.75  E-value=2.4e-09  Score=47.03  Aligned_cols=25  Identities=24%  Similarity=0.458  Sum_probs=13.8

Q ss_pred             cCCCCccCCCchhccccchHHHHHH
Q psy6628          99 TGEKPYACEFCPLTFRHSSHLFRHR  123 (132)
Q Consensus        99 ~~~~~~~C~~C~~~f~~~~~l~~H~  123 (132)
                      .+|+||.|.+|++.|.+.++|..|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            3455555555555555555555554

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.74  E-value=3.1e-09  Score=43.77  Aligned_cols=27  Identities=26%  Similarity=0.581  Sum_probs=22.2

Q ss_pred             CCCccCCCchhccccchHHHHHHHhhh
Q psy6628         101 EKPYACEFCPLTFRHSSHLFRHRRSLH  127 (132)
Q Consensus       101 ~~~~~C~~C~~~f~~~~~l~~H~~~~~  127 (132)
                      ++||.|.+|++.|...+.|..|++.|.
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            468888888888888888888887765

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=1.2e-08  Score=44.48  Aligned_cols=34  Identities=44%  Similarity=0.717  Sum_probs=29.6

Q ss_pred             ccCCCCCccCCcccccccChhhHHHHHHHhcCCC
Q psy6628          69 DHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEK  102 (132)
Q Consensus        69 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~  102 (132)
                      .|.++++|.|..|++.|.....|..|+.+|.+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            4778889999999999999999999999988763

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.72  E-value=4.8e-09  Score=44.28  Aligned_cols=29  Identities=31%  Similarity=0.724  Sum_probs=22.2

Q ss_pred             CCccCC--CchhccccchHHHHHHHhhhhhc
Q psy6628         102 KPYACE--FCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus       102 ~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      +||.|+  .|++.|...+.|..|+++|.+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            467786  78888888888888888777654

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=1.1e-08  Score=45.01  Aligned_cols=34  Identities=24%  Similarity=0.451  Sum_probs=30.0

Q ss_pred             ccCCCCCccCCcccccccCh-hhHHHHHHHhcCCC
Q psy6628          69 DHQKEKPYQCSQCSKSFFSK-YDHKIHSRVHTGEK  102 (132)
Q Consensus        69 ~~~~~~~~~c~~C~~~~~~~-~~l~~h~~~h~~~~  102 (132)
                      .|+++++|.|..|++.|... ..|..|+.+|.+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            47788999999999999998 99999999998764

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.72  E-value=5.5e-09  Score=42.64  Aligned_cols=26  Identities=38%  Similarity=0.819  Sum_probs=21.4

Q ss_pred             CCCccCCCchhccccchHHHHHHHhh
Q psy6628         101 EKPYACEFCPLTFRHSSHLFRHRRSL  126 (132)
Q Consensus       101 ~~~~~C~~C~~~f~~~~~l~~H~~~~  126 (132)
                      ++||.|.+|++.|...+.|..|++.|
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHc
Confidence            46888888888888888888888765

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=1.9e-08  Score=43.81  Aligned_cols=34  Identities=32%  Similarity=0.444  Sum_probs=29.0

Q ss_pred             ccCCCCCccCCcccccccChhhHHHHHHHhcCCC
Q psy6628          69 DHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEK  102 (132)
Q Consensus        69 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~  102 (132)
                      .|.++++|.|..|++.|.....|..|+.+|.+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            3677888999999999999999999999888764

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=1.6e-08  Score=44.93  Aligned_cols=31  Identities=16%  Similarity=0.377  Sum_probs=27.5

Q ss_pred             cccceeeeCCC--CccccCChhHHHHHHHhhcC
Q psy6628           6 NIHRVVFTCQV--CSKIFSYENGLKAHVRNKHG   36 (132)
Q Consensus         6 ~~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~~   36 (132)
                      +.++++|+|++  |++.|.....|..|+++|.+
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            45788999986  99999999999999999876

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=1.5e-08  Score=44.29  Aligned_cols=34  Identities=35%  Similarity=0.547  Sum_probs=28.8

Q ss_pred             ccCCCCCccCCcccccccChhhHHHHHHHhcCCC
Q psy6628          69 DHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEK  102 (132)
Q Consensus        69 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~  102 (132)
                      .|+++++|.|..|++.|.....|..|+.+|.+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            4678889999999999999999999998887653

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.69  E-value=2.2e-09  Score=53.16  Aligned_cols=43  Identities=23%  Similarity=0.454  Sum_probs=20.7

Q ss_pred             ccceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccCh
Q psy6628           7 IHRVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTR   59 (132)
Q Consensus         7 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~   59 (132)
                      .++++|.|+.|++.|.....|.   .+|.+   +.+ |.|+   .|++.|...
T Consensus        10 ~~~k~~~C~~C~k~F~~~~~l~---~~H~~---~k~-~~C~---~C~k~f~~~   52 (62)
T 1vd4_A           10 TNRASFKCPVCSSTFTDLEANQ---LFDPM---TGT-FRCT---FCHTEVEED   52 (62)
T ss_dssp             CSSSEEECSSSCCEEEHHHHHH---HEETT---TTE-EBCS---SSCCBCEEC
T ss_pred             CCCCCccCCCCCchhccHHHhH---hhcCC---CCC-EECC---CCCCccccC
Confidence            3455555555555555544443   33333   223 5555   555555443

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.69  E-value=3.8e-09  Score=43.22  Aligned_cols=26  Identities=23%  Similarity=0.510  Sum_probs=21.3

Q ss_pred             CCCccCCCchhccccchHHHHHHHhh
Q psy6628         101 EKPYACEFCPLTFRHSSHLFRHRRSL  126 (132)
Q Consensus       101 ~~~~~C~~C~~~f~~~~~l~~H~~~~  126 (132)
                      ++||.|.+|++.|...+.|..|++.|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhc
Confidence            46888888888888888888888765

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=1.3e-08  Score=44.43  Aligned_cols=34  Identities=24%  Similarity=0.437  Sum_probs=27.8

Q ss_pred             ccCCCCCccCCcccccccChhhHHHHHHHhcCCC
Q psy6628          69 DHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEK  102 (132)
Q Consensus        69 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~  102 (132)
                      .|.++++|.|..|++.|.....|..|+.+|.+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            3677888888889988888888888888887653

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.68  E-value=9.3e-09  Score=45.13  Aligned_cols=32  Identities=25%  Similarity=0.503  Sum_probs=26.6

Q ss_pred             cCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCC
Q psy6628          70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF  108 (132)
Q Consensus        70 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  108 (132)
                      ..+++||.|..|+++|...+.|..|+       ||.|..
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~-------py~C~~   34 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ-------AYYCSH   34 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH-------HHTSTT
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC-------CeECcC
Confidence            45788999999999999999999998       677653

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.65  E-value=8.1e-09  Score=42.00  Aligned_cols=26  Identities=35%  Similarity=0.704  Sum_probs=19.2

Q ss_pred             CccCCCchhccccchHHHHHHHhhhh
Q psy6628         103 PYACEFCPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus       103 ~~~C~~C~~~f~~~~~l~~H~~~~~~  128 (132)
                      ||.|.+|++.|...+.|..|++.|.+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            47777888888887888888777655

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=3.1e-08  Score=43.21  Aligned_cols=33  Identities=36%  Similarity=0.576  Sum_probs=27.9

Q ss_pred             cCCCCCccCCcccccccChhhHHHHHHHhcCCC
Q psy6628          70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEK  102 (132)
Q Consensus        70 ~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~  102 (132)
                      +.++++|.|..|++.|.....|..|+.+|.+++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            567788999999999999999999998887753

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.64  E-value=9e-09  Score=42.95  Aligned_cols=28  Identities=32%  Similarity=0.643  Sum_probs=21.0

Q ss_pred             CCccCCCchhccccchHHHHH-HHhhhhh
Q psy6628         102 KPYACEFCPLTFRHSSHLFRH-RRSLHQM  129 (132)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H-~~~~~~~  129 (132)
                      +||.|..|++.|...+.|..| ++.|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            467888888888888888888 5666654

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.62  E-value=1.7e-08  Score=47.22  Aligned_cols=34  Identities=26%  Similarity=0.608  Sum_probs=27.0

Q ss_pred             cCCCCCccCCcccccccChhhHHHHHH-HhcCCCC
Q psy6628          70 HQKEKPYQCSQCSKSFFSKYDHKIHSR-VHTGEKP  103 (132)
Q Consensus        70 ~~~~~~~~c~~C~~~~~~~~~l~~h~~-~h~~~~~  103 (132)
                      |+++++|.|..|++.|.....|..|+. +|.++..
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            678888999999999999999999988 8877643

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.59  E-value=2.5e-09  Score=45.68  Aligned_cols=30  Identities=17%  Similarity=0.328  Sum_probs=19.2

Q ss_pred             CccCCcccccccChhhHHHHHHHhcCCCCc
Q psy6628          75 PYQCSQCSKSFFSKYDHKIHSRVHTGEKPY  104 (132)
Q Consensus        75 ~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~  104 (132)
                      ||.|..|++.|...+.|..|+.+|++++||
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            566666666666666666666666666654

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.58  E-value=4.8e-08  Score=42.93  Aligned_cols=34  Identities=35%  Similarity=0.544  Sum_probs=29.6

Q ss_pred             ccCCCCCccCCc--ccccccChhhHHHHHHHhcCCC
Q psy6628          69 DHQKEKPYQCSQ--CSKSFFSKYDHKIHSRVHTGEK  102 (132)
Q Consensus        69 ~~~~~~~~~c~~--C~~~~~~~~~l~~h~~~h~~~~  102 (132)
                      .++++++|.|..  |++.|...+.|..|+.+|++++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            367889999984  9999999999999999998764

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=4.9e-08  Score=42.89  Aligned_cols=31  Identities=19%  Similarity=0.359  Sum_probs=27.2

Q ss_pred             cccceeeeCCCCccccCChhHHHHH-HHhhcC
Q psy6628           6 NIHRVVFTCQVCSKIFSYENGLKAH-VRNKHG   36 (132)
Q Consensus         6 ~~~~~~~~C~~C~~~f~~~~~l~~h-~~~~~~   36 (132)
                      +.++++|+|..|++.|.....|..| ++.|.+
T Consensus         4 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            4 GSSGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             SSSSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            5678899999999999999999999 887764

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.98  E-value=7.4e-09  Score=41.82  Aligned_cols=25  Identities=48%  Similarity=0.776  Sum_probs=20.7

Q ss_pred             CCccCCCchhccccchHHHHHHHhh
Q psy6628         102 KPYACEFCPLTFRHSSHLFRHRRSL  126 (132)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H~~~~  126 (132)
                      +||.|++|++.|...+.|..|++.|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            4788888888888888888888765

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.56  E-value=5.2e-08  Score=39.56  Aligned_cols=26  Identities=19%  Similarity=0.484  Sum_probs=22.5

Q ss_pred             ceeeeCCCCccccCChhHHHHHHHhh
Q psy6628           9 RVVFTCQVCSKIFSYENGLKAHVRNK   34 (132)
Q Consensus         9 ~~~~~C~~C~~~f~~~~~l~~h~~~~   34 (132)
                      +++|.|+.|++.|.....|..|+++|
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHc
Confidence            36789999999999999999998876

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=1.3e-09  Score=56.13  Aligned_cols=50  Identities=24%  Similarity=0.400  Sum_probs=23.4

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcC
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTG  100 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~  100 (132)
                      +.|.   .|+..|. ...|..|.  .+.+.+++.|..|++.|. ...|..|+.++++
T Consensus        18 ~~C~---~C~~~~~-~~~L~~H~--~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~   67 (75)
T 2d9k_A           18 AVCQ---HCDLELS-ILKLKEHE--DYCGARTELCGNCGRNVL-VKDLKTHPEVCGR   67 (75)
T ss_dssp             EECS---SSCCEEC-HHHHHHHH--HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTT
T ss_pred             cCCc---ccChHhh-HHHHHHHH--hHcCCCceEcccCCCcCc-HHHHHHHHHHccC
Confidence            4554   4544442 34444453  244445555555555443 2444555544443

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.53  E-value=5.6e-08  Score=39.76  Aligned_cols=27  Identities=30%  Similarity=0.640  Sum_probs=22.4

Q ss_pred             ceeeeCCCCccccCChhHHHHHHHhhc
Q psy6628           9 RVVFTCQVCSKIFSYENGLKAHVRNKH   35 (132)
Q Consensus         9 ~~~~~C~~C~~~f~~~~~l~~h~~~~~   35 (132)
                      +++|.|+.|++.|.....|..|+++|.
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            357889999999999999999987764

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.50  E-value=3.8e-08  Score=45.75  Aligned_cols=35  Identities=23%  Similarity=0.630  Sum_probs=31.4

Q ss_pred             hccCCCCCccCC--cccccccChhhHHHHHHHhcCCC
Q psy6628          68 RDHQKEKPYQCS--QCSKSFFSKYDHKIHSRVHTGEK  102 (132)
Q Consensus        68 ~~~~~~~~~~c~--~C~~~~~~~~~l~~h~~~h~~~~  102 (132)
                      ..|+++++|.|.  .|++.|...+.|..|+.+|.+++
T Consensus        11 ~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           11 VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             CEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            458999999996  69999999999999999998764

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.50  E-value=1.4e-07  Score=38.73  Aligned_cols=28  Identities=32%  Similarity=0.674  Sum_probs=21.8

Q ss_pred             CCccCCcccccccChhhHHHHHHHhcCC
Q psy6628          74 KPYQCSQCSKSFFSKYDHKIHSRVHTGE  101 (132)
Q Consensus        74 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~  101 (132)
                      ++|.|..|++.|.....|..|+..|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            3677888888888888888888877765

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.49  E-value=4.5e-08  Score=39.82  Aligned_cols=25  Identities=20%  Similarity=0.503  Sum_probs=21.1

Q ss_pred             eeeeCCCCccccCChhHHHHHHHhh
Q psy6628          10 VVFTCQVCSKIFSYENGLKAHVRNK   34 (132)
Q Consensus        10 ~~~~C~~C~~~f~~~~~l~~h~~~~   34 (132)
                      ++|.|+.|++.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            5788999999998888888888765

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.47  E-value=1.1e-07  Score=39.37  Aligned_cols=28  Identities=36%  Similarity=0.712  Sum_probs=20.9

Q ss_pred             CCccCCcccccccChhhHHHHHHHhcCC
Q psy6628          74 KPYQCSQCSKSFFSKYDHKIHSRVHTGE  101 (132)
Q Consensus        74 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~  101 (132)
                      ++|.|..|++.|.....|..|+..|.++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            5677777777777777777777777665

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.47  E-value=1e-07  Score=39.18  Aligned_cols=28  Identities=21%  Similarity=0.585  Sum_probs=20.7

Q ss_pred             CCccCCcccccccChhhHHHHHHHhcCC
Q psy6628          74 KPYQCSQCSKSFFSKYDHKIHSRVHTGE  101 (132)
Q Consensus        74 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~  101 (132)
                      +||.|..|++.|.....|..|+.+|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            3677777777777777777777777665

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.46  E-value=1.8e-07  Score=38.65  Aligned_cols=29  Identities=24%  Similarity=0.443  Sum_probs=22.8

Q ss_pred             CCccCCcccccccChhhHHHHHHHhcCCC
Q psy6628          74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEK  102 (132)
Q Consensus        74 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~~  102 (132)
                      ++|.|..|++.|.....|..|+..|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            36778888888888888888888877665

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.45  E-value=1.8e-07  Score=38.33  Aligned_cols=29  Identities=28%  Similarity=0.560  Sum_probs=23.0

Q ss_pred             CCccCCcccccccChhhHHHHHHHhcCCC
Q psy6628          74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEK  102 (132)
Q Consensus        74 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~~  102 (132)
                      ++|.|..|++.|.....|..|+..|.+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            46788888888888888888888887653

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.45  E-value=1.4e-07  Score=38.68  Aligned_cols=29  Identities=41%  Similarity=0.832  Sum_probs=22.9

Q ss_pred             CCccCCcccccccChhhHHHHHHHhcCCC
Q psy6628          74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEK  102 (132)
Q Consensus        74 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~~  102 (132)
                      ++|.|..|++.|.....|..|+.+|.+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            46788888888888888888888887653

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.44  E-value=2.4e-07  Score=46.27  Aligned_cols=30  Identities=17%  Similarity=0.328  Sum_probs=15.5

Q ss_pred             cCCCCccCCCchhccccchHHHHHHHhhhh
Q psy6628          99 TGEKPYACEFCPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus        99 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  128 (132)
                      .+++||.|.+|++.|...+.|..|+++|.+
T Consensus         9 ~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg   38 (66)
T 2epp_A            9 REAGILPCGLCGKVFTDANRLRQHEAQHGV   38 (66)
T ss_dssp             CCCCCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             CCccCcCCCCCCCccCCHHHHHhhhhhhCC
Confidence            344555555555555555555555555444

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.41  E-value=3.1e-07  Score=38.68  Aligned_cols=30  Identities=30%  Similarity=0.732  Sum_probs=24.6

Q ss_pred             CCCccCC--cccccccChhhHHHHHHHhcCCC
Q psy6628          73 EKPYQCS--QCSKSFFSKYDHKIHSRVHTGEK  102 (132)
Q Consensus        73 ~~~~~c~--~C~~~~~~~~~l~~h~~~h~~~~  102 (132)
                      +++|.|.  .|++.|.....|..|+.+|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            3678888  79999999889999988887753

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.38  E-value=2.7e-07  Score=38.59  Aligned_cols=29  Identities=41%  Similarity=0.863  Sum_probs=22.2

Q ss_pred             CCccCC--cccccccChhhHHHHHHHhcCCC
Q psy6628          74 KPYQCS--QCSKSFFSKYDHKIHSRVHTGEK  102 (132)
Q Consensus        74 ~~~~c~--~C~~~~~~~~~l~~h~~~h~~~~  102 (132)
                      +||.|.  .|++.|.....|..|+.+|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            467786  78888888888888888877653

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.38  E-value=1.1e-07  Score=39.06  Aligned_cols=26  Identities=27%  Similarity=0.560  Sum_probs=20.0

Q ss_pred             CCccCC--CchhccccchHHHHHHHhhh
Q psy6628         102 KPYACE--FCPLTFRHSSHLFRHRRSLH  127 (132)
Q Consensus       102 ~~~~C~--~C~~~f~~~~~l~~H~~~~~  127 (132)
                      +||.|.  .|++.|...+.|..|+++|.
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            467787  88888888888888877764

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.37  E-value=2.3e-07  Score=37.45  Aligned_cols=26  Identities=23%  Similarity=0.620  Sum_probs=19.5

Q ss_pred             eeeCCCCccccCChhHHHHHHHhhcC
Q psy6628          11 VFTCQVCSKIFSYENGLKAHVRNKHG   36 (132)
Q Consensus        11 ~~~C~~C~~~f~~~~~l~~h~~~~~~   36 (132)
                      +|.|..|++.|.....|..|+++|.+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            47788888888888888888777653

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.71  E-value=4.9e-08  Score=39.24  Aligned_cols=25  Identities=28%  Similarity=0.651  Sum_probs=20.9

Q ss_pred             eeeeCCCCccccCChhHHHHHHHhh
Q psy6628          10 VVFTCQVCSKIFSYENGLKAHVRNK   34 (132)
Q Consensus        10 ~~~~C~~C~~~f~~~~~l~~h~~~~   34 (132)
                      ++|.|++|++.|.....|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            4688999999998888888888765

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.67  E-value=6.4e-08  Score=39.91  Aligned_cols=28  Identities=46%  Similarity=0.762  Sum_probs=20.2

Q ss_pred             CCccCCcccccccChhhHHHHHHHhcCC
Q psy6628          74 KPYQCSQCSKSFFSKYDHKIHSRVHTGE  101 (132)
Q Consensus        74 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~  101 (132)
                      +||.|..|++.|.....|..|+..|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            3567777777777777777777777654

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.29  E-value=4.3e-07  Score=37.51  Aligned_cols=27  Identities=26%  Similarity=0.685  Sum_probs=16.8

Q ss_pred             CccCCcccccccChhhHHHH-HHHhcCC
Q psy6628          75 PYQCSQCSKSFFSKYDHKIH-SRVHTGE  101 (132)
Q Consensus        75 ~~~c~~C~~~~~~~~~l~~h-~~~h~~~  101 (132)
                      +|.|..|++.|.....|..| +..|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCC
Confidence            56666666666666666666 4555544

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.61  E-value=1e-07  Score=39.54  Aligned_cols=28  Identities=43%  Similarity=0.852  Sum_probs=20.7

Q ss_pred             CCccCCcccccccChhhHHHHHHHhcCC
Q psy6628          74 KPYQCSQCSKSFFSKYDHKIHSRVHTGE  101 (132)
Q Consensus        74 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~  101 (132)
                      ++|.|..|++.|.....|..|+..|.++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            4677777777777777777777777654

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.21  E-value=8.9e-07  Score=36.14  Aligned_cols=26  Identities=23%  Similarity=0.600  Sum_probs=23.1

Q ss_pred             eeeeCC--CCccccCChhHHHHHHHhhc
Q psy6628          10 VVFTCQ--VCSKIFSYENGLKAHVRNKH   35 (132)
Q Consensus        10 ~~~~C~--~C~~~f~~~~~l~~h~~~~~   35 (132)
                      ++|.|.  .|++.|.....|..|+++|.
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            368999  99999999999999998875

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.05  E-value=9.4e-06  Score=40.17  Aligned_cols=47  Identities=26%  Similarity=0.455  Sum_probs=25.4

Q ss_pred             ccccccChhhHHHHHH-HhcCCC------CccCC--CchhccccchHHHHHHHhhh
Q psy6628          81 CSKSFFSKYDHKIHSR-VHTGEK------PYACE--FCPLTFRHSSHLFRHRRSLH  127 (132)
Q Consensus        81 C~~~~~~~~~l~~h~~-~h~~~~------~~~C~--~C~~~f~~~~~l~~H~~~~~  127 (132)
                      |++.|.....|..|+. .|.+.+      +|.|.  .|++.+.....|..|++..|
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            4444444444444442 333322      56674  57776666667777776543

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.03  E-value=1.6e-05  Score=39.28  Aligned_cols=51  Identities=18%  Similarity=0.219  Sum_probs=29.2

Q ss_pred             CCccccCChhHHHHHHH-hhcCCCC--CCCccccCCCCCCcccccChHHHHhhhh
Q psy6628          16 VCSKIFSYENGLKAHVR-NKHGSSE--ERPRFKCEGRGECDRVFTTRNMLNIHIK   67 (132)
Q Consensus        16 ~C~~~f~~~~~l~~h~~-~~~~~~~--~~~~~~c~~~~~c~~~~~~~~~l~~h~~   67 (132)
                      .|++.|.+...|..|+. .|.+...  +...|.|.|.+ |+..+.....|..|++
T Consensus         8 ~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~-C~~~~~~~~~L~~Hir   61 (64)
T 1zw8_A            8 ECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWED-CDFLGDDTASIVNHIN   61 (64)
T ss_dssp             TCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSS-CCCEESSHHHHHHHHH
T ss_pred             CCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCC-CcCCCCChHHHHhhcc
Confidence            36777777777777764 4544321  11136666554 6666666666666653

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.63  E-value=6.2e-06  Score=45.97  Aligned_cols=30  Identities=30%  Similarity=0.315  Sum_probs=21.8

Q ss_pred             HHhcCCCCccCCCchhccccchHHHHHHHh
Q psy6628          96 RVHTGEKPYACEFCPLTFRHSSHLFRHRRS  125 (132)
Q Consensus        96 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  125 (132)
                      ..++|++||.|..|++.|.+.+.|..|+++
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            346677777777777777777777777654

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=97.26  E-value=0.00014  Score=42.90  Aligned_cols=83  Identities=22%  Similarity=0.409  Sum_probs=54.1

Q ss_pred             cccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHH
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHR  123 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  123 (132)
                      ..|+.. -|+...... .+..|. . .=..++..|+.|+..+ ....|..|....-..++..|+.|+..+.. ..|..|.
T Consensus        83 v~C~n~-GC~~~~~~~-~l~~H~-~-~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~  156 (170)
T 3hcs_A           83 VKCPNE-GCLHKMELR-HLEDHQ-A-HCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHD  156 (170)
T ss_dssp             EECCST-TCCCEEEGG-GHHHHH-T-TCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHH
T ss_pred             cCCCCC-CCCceecHh-HHHHHH-h-cCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHH
Confidence            456422 365554433 355564 2 1223456788898877 55678889887777888999999987754 5679999


Q ss_pred             HhhhhhccC
Q psy6628         124 RSLHQMYEQ  132 (132)
Q Consensus       124 ~~~~~~~~~  132 (132)
                      ..+.|+.+|
T Consensus       157 ~~~~~~~~~  165 (170)
T 3hcs_A          157 QNCPLALEH  165 (170)
T ss_dssp             TTCCC----
T ss_pred             HhCcChhhh
Confidence            888887764

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.18  E-value=0.00041  Score=39.04  Aligned_cols=75  Identities=20%  Similarity=0.363  Sum_probs=44.6

Q ss_pred             cccCCCCCCcccccChHHHHhhhh-hccCCC-CCccC------CcccccccChhhHHHHHHHhcCCCCccCCCchhcccc
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHIK-RDHQKE-KPYQC------SQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRH  115 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~~-~~~~~~-~~~~c------~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~  115 (132)
                      +.|.   .|...|.....+..|.. ..|... +.+.+      ..-+..+...    .+.....+...|.|.+|.+.|.+
T Consensus        33 ~~C~---~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~C~~C~~~f~s  105 (127)
T 1zu1_A           33 TQCK---VCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAA----PAEISDGEDRSKCCPVCNMTFSS  105 (127)
T ss_dssp             SEET---TTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCC----SSCCSSCCCTTTEETTTTEECSS
T ss_pred             CcCc---CCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCC----ccccccCCCCCeEcCCCCCEeCC
Confidence            6788   89888888887877762 112110 11111      0001111111    01123455678999999999999


Q ss_pred             chHHHHHHHh
Q psy6628         116 SSHLFRHRRS  125 (132)
Q Consensus       116 ~~~l~~H~~~  125 (132)
                      ...+..|...
T Consensus       106 ~~~~~~H~~g  115 (127)
T 1zu1_A          106 PVVAESHYIG  115 (127)
T ss_dssp             HHHHHHHHTS
T ss_pred             HHHHHHHHCC
Confidence            9999999853

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.93  E-value=0.00024  Score=39.59  Aligned_cols=30  Identities=27%  Similarity=0.461  Sum_probs=25.0

Q ss_pred             ccccceeeeCCCCccccCChhHHHHHHHhh
Q psy6628           5 HNIHRVVFTCQVCSKIFSYENGLKAHVRNK   34 (132)
Q Consensus         5 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~   34 (132)
                      -+.+.++|.|..|++.|.+...|..|+++.
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            456788899999999999999999988754

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.69  E-value=0.0013  Score=29.91  Aligned_cols=22  Identities=18%  Similarity=0.294  Sum_probs=12.7

Q ss_pred             CccCCcccccccChhhHHHHHH
Q psy6628          75 PYQCSQCSKSFFSKYDHKIHSR   96 (132)
Q Consensus        75 ~~~c~~C~~~~~~~~~l~~h~~   96 (132)
                      ++.|+.|+..|.....|..||+
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhh
Confidence            3455556555555555555555

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=96.23  E-value=0.012  Score=24.91  Aligned_cols=28  Identities=25%  Similarity=0.405  Sum_probs=21.2

Q ss_pred             ceeeeCCCCccccCChhHHHHHHHhhcC
Q psy6628           9 RVVFTCQVCSKIFSYENGLKAHVRNKHG   36 (132)
Q Consensus         9 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~   36 (132)
                      ...|.||+|-+.|.+...|..|-...+.
T Consensus         3 ~EGFiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            3 SEGFICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             SEEEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             CcccCCcHHHHHcCCHHHHHHHHHhccc
Confidence            3468888888888888888888765543

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.08  E-value=0.0051  Score=27.93  Aligned_cols=23  Identities=22%  Similarity=0.433  Sum_probs=19.5

Q ss_pred             eeeeCCCCccccCChhHHHHHHH
Q psy6628          10 VVFTCQVCSKIFSYENGLKAHVR   32 (132)
Q Consensus        10 ~~~~C~~C~~~f~~~~~l~~h~~   32 (132)
                      ..|.|+.|+..|.....|+.|+.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            56888888888888888888886

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=95.82  E-value=0.0053  Score=26.04  Aligned_cols=26  Identities=23%  Similarity=0.648  Sum_probs=20.2

Q ss_pred             CccCCCchhccccchHHHHHHHhhhh
Q psy6628         103 PYACEFCPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus       103 ~~~C~~C~~~f~~~~~l~~H~~~~~~  128 (132)
                      -|.|++|.+.|.+...|..|-...|.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccc
Confidence            37788888888888888888776554

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=94.76  E-value=0.019  Score=32.21  Aligned_cols=80  Identities=20%  Similarity=0.273  Sum_probs=48.9

Q ss_pred             ceeeeCCCCccccCChhHHHHHH--HhhcCCCCCCCccccC---CCCCCcccccChHHHHhhhhhccCCCCCccCCcccc
Q psy6628           9 RVVFTCQVCSKIFSYENGLKAHV--RNKHGSSEERPRFKCE---GRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSK   83 (132)
Q Consensus         9 ~~~~~C~~C~~~f~~~~~l~~h~--~~~~~~~~~~~~~~c~---~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~   83 (132)
                      .+++.|..|+..|.+...+..|.  +.|....  . .+.+.   ....-+..+...    .+. ....+.+.+.|.+|..
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v--~-~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~C~~C~~  101 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKV--R-RYMAINQGEDSVPAKKFKAA----PAE-ISDGEDRSKCCPVCNM  101 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHH--H-HHHHHTTCCCCCSCCCCSCC----SSC-CSSCCCTTTEETTTTE
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHH--H-HHhcccCcccCCCCCccCCC----ccc-cccCCCCCeEcCCCCC
Confidence            45688999999999999999998  3332100  0 01110   000011122111    111 2355677899999999


Q ss_pred             cccChhhHHHHHH
Q psy6628          84 SFFSKYDHKIHSR   96 (132)
Q Consensus        84 ~~~~~~~l~~h~~   96 (132)
                      .|.+...+..|..
T Consensus       102 ~f~s~~~~~~H~~  114 (127)
T 1zu1_A          102 TFSSPVVAESHYI  114 (127)
T ss_dssp             ECSSHHHHHHHHT
T ss_pred             EeCCHHHHHHHHC
Confidence            9999999999975

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=93.58  E-value=0.028  Score=29.16  Aligned_cols=28  Identities=32%  Similarity=0.464  Sum_probs=18.7

Q ss_pred             CCccCCcccccccChhhHHHHHHHhcCCCCc
Q psy6628          74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEKPY  104 (132)
Q Consensus        74 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~  104 (132)
                      ....|.+||+.|..   |.+|..+++|..|.
T Consensus        20 d~iiClecGK~fK~---LkRHL~~~hgltpe   47 (87)
T 2jsp_A           20 DHIVCLECGGSFKS---LKRHLTTHHSMTPE   47 (87)
T ss_dssp             SCEECTBTCCEESB---HHHHHHHTTCSCHH
T ss_pred             CceEecccchhhHH---HHHHHHHccCCCHH
Confidence            34577778887763   55777776666553

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=93.20  E-value=0.055  Score=23.02  Aligned_cols=23  Identities=17%  Similarity=0.491  Sum_probs=16.3

Q ss_pred             CCccCCCchhccccchHHHHHHH
Q psy6628         102 KPYACEFCPLTFRHSSHLFRHRR  124 (132)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H~~  124 (132)
                      ..+.|..|+..|+...++..|++
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhhe
Confidence            45677777777777777777765

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=92.11  E-value=0.052  Score=32.96  Aligned_cols=25  Identities=28%  Similarity=0.421  Sum_probs=20.0

Q ss_pred             CCccCCcccccccChhhHHHHHHHhcCCCCccCCCchh
Q psy6628          74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPL  111 (132)
Q Consensus        74 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~  111 (132)
                      ..|.|..||..+.             |+.|+.||+|+.
T Consensus       170 ~~~~C~~CG~i~~-------------g~~p~~CP~C~~  194 (202)
T 1yuz_A          170 KFHLCPICGYIHK-------------GEDFEKCPICFR  194 (202)
T ss_dssp             CEEECSSSCCEEE-------------SSCCSBCTTTCC
T ss_pred             cEEEECCCCCEEc-------------CcCCCCCCCCCC
Confidence            4689999998864             257899999984

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.71  E-value=0.076  Score=26.92  Aligned_cols=27  Identities=22%  Similarity=0.555  Sum_probs=17.7

Q ss_pred             CccCCCchhccc-------cchHHHHHHHhhhhh
Q psy6628         103 PYACEFCPLTFR-------HSSHLFRHRRSLHQM  129 (132)
Q Consensus       103 ~~~C~~C~~~f~-------~~~~l~~H~~~~~~~  129 (132)
                      --.|..|++.+.       .-+.|.+|++..|.+
T Consensus        28 ~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~~   61 (76)
T 2djr_A           28 YATCRLCGRQVSRGPGVNVGTTALWKHLKSMHRE   61 (76)
T ss_dssp             CEEESSSCCBCCCCSSCCSSSCHHHHHHHHTTHH
T ss_pred             EEECCCCCCccCCCCCCCCchHHHHHHHHHHCHH
Confidence            345666666554       357888888877764

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=91.38  E-value=0.25  Score=19.84  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=17.7

Q ss_pred             eeeCCCCccccCChhHHHHHHH
Q psy6628          11 VFTCQVCSKIFSYENGLKAHVR   32 (132)
Q Consensus        11 ~~~C~~C~~~f~~~~~l~~h~~   32 (132)
                      .|.|++|.....+...|..|..
T Consensus         3 k~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            3 DFCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             CEECTTSSCEESSHHHHHHHHH
T ss_pred             cccCccccccCcChHHHHHHHH
Confidence            4788899888888888887754

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=90.94  E-value=0.12  Score=21.30  Aligned_cols=22  Identities=32%  Similarity=0.828  Sum_probs=14.1

Q ss_pred             CCCchhccccchHHHHHHHhhh
Q psy6628         106 CEFCPLTFRHSSHLFRHRRSLH  127 (132)
Q Consensus       106 C~~C~~~f~~~~~l~~H~~~~~  127 (132)
                      |..|.+.|+.--+|..|++..|
T Consensus        12 crfckkkysdvknlikhire~h   33 (37)
T 2elu_A           12 CRFCKKKYSDVKNLIKHIRDAH   33 (37)
T ss_dssp             ETTTTEECSSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            5566666766666767666543

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=90.60  E-value=0.13  Score=27.68  Aligned_cols=31  Identities=29%  Similarity=0.559  Sum_probs=22.4

Q ss_pred             CCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhcccc
Q psy6628          74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRH  115 (132)
Q Consensus        74 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~  115 (132)
                      .|+.|..||..|.           ....+|-.|+.|......
T Consensus        66 ~p~~C~~CG~~F~-----------~~~~kPsrCP~CkSe~Ie   96 (105)
T 2gmg_A           66 KPAQCRKCGFVFK-----------AEINIPSRCPKCKSEWIE   96 (105)
T ss_dssp             CCCBBTTTCCBCC-----------CCSSCCSSCSSSCCCCBC
T ss_pred             ECcChhhCcCeec-----------ccCCCCCCCcCCCCCccC
Confidence            5788999999982           123578899999866543

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=90.59  E-value=0.16  Score=23.69  Aligned_cols=21  Identities=14%  Similarity=0.373  Sum_probs=18.0

Q ss_pred             ccCCCchhccccchHHHHHHH
Q psy6628         104 YACEFCPLTFRHSSHLFRHRR  124 (132)
Q Consensus       104 ~~C~~C~~~f~~~~~l~~H~~  124 (132)
                      -.|..|+..|..+-+++.|+-
T Consensus        14 ~eC~lC~vkYs~r~slqDHIF   34 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIF   34 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHT
T ss_pred             ccccccCcccccccchhhhhc
Confidence            589999999999988888874

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=90.47  E-value=0.21  Score=21.75  Aligned_cols=26  Identities=12%  Similarity=0.339  Sum_probs=17.0

Q ss_pred             cceeeeCCCCccccCChhHHHHHHHhh
Q psy6628           8 HRVVFTCQVCSKIFSYENGLKAHVRNK   34 (132)
Q Consensus         8 ~~~~~~C~~C~~~f~~~~~l~~h~~~~   34 (132)
                      ....+.|+.|++.+.. ..+.+|.--|
T Consensus         6 ~~~~~~C~~C~~~i~~-~~~~EH~D~H   31 (39)
T 2i5o_A            6 AEDQVPCEKCGSLVPV-WDMPEHMDYH   31 (39)
T ss_dssp             CCCEEECTTTCCEEEG-GGHHHHHHHH
T ss_pred             cCCCcccccccCcCCc-ccccchhhHH
Confidence            4556888888887765 4456665443

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=90.26  E-value=0.36  Score=28.19  Aligned_cols=84  Identities=21%  Similarity=0.381  Sum_probs=54.0

Q ss_pred             ceeeeCC--CCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCccccccc
Q psy6628           9 RVVFTCQ--VCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFF   86 (132)
Q Consensus         9 ~~~~~C~--~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~   86 (132)
                      .....|+  -|+..+. ...+..|.. ...   ..+ ..|+   .|+..+.. ..|..|. ...-..+...|..|+..+.
T Consensus        80 ~l~v~C~n~GC~~~~~-~~~l~~H~~-~C~---~~~-v~C~---~C~~~~~r-~~l~~H~-~~~C~~r~~~C~~C~~~~~  148 (170)
T 3hcs_A           80 SLMVKCPNEGCLHKME-LRHLEDHQA-HCE---FAL-MDCP---QCQRPFQK-FHINIHI-LKDCPRRQVSCDNCAASMA  148 (170)
T ss_dssp             TSEEECCSTTCCCEEE-GGGHHHHHT-TCT---TSE-EECT---TTCCEEEG-GGHHHHH-HHTCTTCEEECTTTCCEEE
T ss_pred             hcccCCCCCCCCceec-HhHHHHHHh-cCC---cee-eECC---CCChHHHH-HHHHHHh-hhhCCCCCeECCCCCCccC
Confidence            3456784  4766553 466777863 222   333 7888   78887744 4578887 4445566778999998875


Q ss_pred             ChhhHHHHHHHhcCCCCc
Q psy6628          87 SKYDHKIHSRVHTGEKPY  104 (132)
Q Consensus        87 ~~~~l~~h~~~h~~~~~~  104 (132)
                      . ..+..|...+.|+.++
T Consensus       149 ~-~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          149 F-EDKEIHDQNCPLALEH  165 (170)
T ss_dssp             G-GGHHHHHTTCCC----
T ss_pred             H-HHHHhHHHhCcChhhh
Confidence            5 4778999888877554

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=89.97  E-value=0.1  Score=23.69  Aligned_cols=10  Identities=30%  Similarity=1.075  Sum_probs=5.5

Q ss_pred             ccCCcccccc
Q psy6628          76 YQCSQCSKSF   85 (132)
Q Consensus        76 ~~c~~C~~~~   85 (132)
                      |+|..||..+
T Consensus         5 y~C~vCGyvy   14 (46)
T 6rxn_A            5 YVCNVCGYEY   14 (46)
T ss_dssp             EEETTTCCEE
T ss_pred             EECCCCCeEE
Confidence            4555555554

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=89.65  E-value=0.13  Score=26.13  Aligned_cols=46  Identities=24%  Similarity=0.555  Sum_probs=29.9

Q ss_pred             ccccCCCCCCcccccChHHHHhhhhhccCCCCCccCCcccccccChhhHHHH
Q psy6628          43 RFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIH   94 (132)
Q Consensus        43 ~~~c~~~~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h   94 (132)
                      .|.|.   .|+.++.-. .+..|. ..-.+-..+.|..|+..|.. ..+..|
T Consensus        10 ~F~C~---~Cgd~lKK~-kv~~H~-~~Cr~~~~~SCIDC~~~F~~-~~y~~H   55 (79)
T 1wjv_A           10 FFTCN---ACGESVKKI-QVEKHV-SNCRNCECLSCIDCGKDFWG-DDYKSH   55 (79)
T ss_dssp             EEEES---SSCCEEETT-HHHHHH-HHCTTCCEEEETTTTEEEEG-GGTTTC
T ss_pred             EEEcC---CCCCeeecc-cchhHH-hhCCCCCcEEecccCCeeCC-CCEeCE
Confidence            47888   788666543 577776 33444446888889888875 344444

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=87.53  E-value=0.24  Score=29.24  Aligned_cols=25  Identities=32%  Similarity=0.696  Sum_probs=18.9

Q ss_pred             CCccCCcccccccChhhHHHHHHHhcCCCCccCCCchh
Q psy6628          74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPL  111 (132)
Q Consensus        74 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~  111 (132)
                      ..|.|..||..+.             ++.|-.||+|+.
T Consensus       137 ~~~~C~~CG~i~~-------------~~~p~~CP~Cg~  161 (170)
T 3pwf_A          137 KVYICPICGYTAV-------------DEAPEYCPVCGA  161 (170)
T ss_dssp             CEEECTTTCCEEE-------------SCCCSBCTTTCC
T ss_pred             CeeEeCCCCCeeC-------------CCCCCCCCCCCC
Confidence            4588999998874             256779999984

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=87.20  E-value=0.36  Score=29.37  Aligned_cols=27  Identities=22%  Similarity=0.272  Sum_probs=23.2

Q ss_pred             CCCccCCCchhcccc-chHHHHHHHhhh
Q psy6628         101 EKPYACEFCPLTFRH-SSHLFRHRRSLH  127 (132)
Q Consensus       101 ~~~~~C~~C~~~f~~-~~~l~~H~~~~~  127 (132)
                      ..|..|..|+..|.+ -..|+.|+..+-
T Consensus       167 ~~~L~C~~C~~~f~n~~~~LK~HL~~e~  194 (204)
T 3sp4_A          167 QEDLKCWRCGETFGRHFTKLKAHLQEEY  194 (204)
T ss_dssp             GSCCBCTTTCCBCTTCHHHHHHHHHHHH
T ss_pred             CCCceeCCCCchhhcccHHHHHHHHHHH
Confidence            578999999999987 899999987653

>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative C-like transposable element, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6

Probab=87.07  E-value=0.27  Score=24.70  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=17.9

Q ss_pred             CccCCCchhccc---cchHHHHHHHhhhhh
Q psy6628         103 PYACEFCPLTFR---HSSHLFRHRRSLHQM  129 (132)
Q Consensus       103 ~~~C~~C~~~f~---~~~~l~~H~~~~~~~  129 (132)
                      -..|..|.+.+.   .-++|.+|++.+|++
T Consensus        29 ~a~Ck~C~~~l~~~g~TSnL~rHL~~~H~~   58 (73)
T 2ct5_A           29 KIYCRICMAQIAYSGNTSNLSYHLEKNHPE   58 (73)
T ss_dssp             CCEETTTTEECCCCSSTHHHHHHHHHSCHH
T ss_pred             EEECCCCCccccCCCChHhHHHHHHHHCHH
Confidence            445666665543   457888898887763

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=85.98  E-value=0.59  Score=28.41  Aligned_cols=26  Identities=27%  Similarity=0.516  Sum_probs=18.8

Q ss_pred             ceeeeCCCCccccCC-hhHHHHHHHhh
Q psy6628           9 RVVFTCQVCSKIFSY-ENGLKAHVRNK   34 (132)
Q Consensus         9 ~~~~~C~~C~~~f~~-~~~l~~h~~~~   34 (132)
                      ..+..|..|+..|.+ -..|+.|+..+
T Consensus       167 ~~~L~C~~C~~~f~n~~~~LK~HL~~e  193 (204)
T 3sp4_A          167 QEDLKCWRCGETFGRHFTKLKAHLQEE  193 (204)
T ss_dssp             GSCCBCTTTCCBCTTCHHHHHHHHHHH
T ss_pred             CCCceeCCCCchhhcccHHHHHHHHHH
Confidence            346778888888876 67777777654

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=85.19  E-value=1.9  Score=20.12  Aligned_cols=46  Identities=20%  Similarity=0.332  Sum_probs=28.4

Q ss_pred             cCCcccccccChhhHHHHHHHhcCCCCccCCCchh-ccccchHHHHHHHh
Q psy6628          77 QCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPL-TFRHSSHLFRHRRS  125 (132)
Q Consensus        77 ~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~-~f~~~~~l~~H~~~  125 (132)
                      .|++|-........|..|...-...   +||+|-. .-...+.|+.|.++
T Consensus         5 vC~~C~~ECET~kEl~~H~~sCp~g---qCPYC~~~~e~tesAlQaHfkv   51 (57)
T 2k9h_A            5 VCDVCHHECETAKELESHRQSCING---QCPYCMTITEATESALQAHYSI   51 (57)
T ss_dssp             BCTTTCCBCSSTTTHHHHHHHHTTT---BCTTTCCBCCSSHHHHHHHHTT
T ss_pred             hhhHHHhhhhhHHHHHHHhccCCCC---CCCcccCcCCcCHHHHHHHHHH
Confidence            4666666666666777777766433   5666643 23456777777654

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=83.38  E-value=0.43  Score=24.30  Aligned_cols=14  Identities=43%  Similarity=0.980  Sum_probs=11.0

Q ss_pred             ceeeeCCCCccccC
Q psy6628           9 RVVFTCQVCSKIFS   22 (132)
Q Consensus         9 ~~~~~C~~C~~~f~   22 (132)
                      +-+|+||.||..|-
T Consensus        49 ~F~FkCP~CgEEFy   62 (95)
T 2k5c_A           49 EFVFKCPVCGEEFY   62 (95)
T ss_dssp             HSEEECTTTCCEEE
T ss_pred             HHhhcCCCccHHHh
Confidence            34699999998873

>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A

Probab=81.71  E-value=0.27  Score=29.53  Aligned_cols=25  Identities=20%  Similarity=0.579  Sum_probs=18.9

Q ss_pred             CccCCcccccccChhhHHHHHHHhcCCCCccCCCchh
Q psy6628          75 PYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPL  111 (132)
Q Consensus        75 ~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~  111 (132)
                      .|.|..||..+...            +.|-.||+|+.
T Consensus       155 ~~~C~~CG~~~~g~------------~~p~~CP~C~~  179 (191)
T 1lko_A          155 KWRCRNCGYVHEGT------------GAPELCPACAH  179 (191)
T ss_dssp             EEEETTTCCEEEEE------------ECCSBCTTTCC
T ss_pred             eEEECCCCCEeeCC------------CCCCCCCCCcC
Confidence            58899999887521            45669999985

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=80.48  E-value=0.22  Score=25.70  Aligned_cols=10  Identities=50%  Similarity=1.192  Sum_probs=4.7

Q ss_pred             ccCCcccccc
Q psy6628          76 YQCSQCSKSF   85 (132)
Q Consensus        76 ~~c~~C~~~~   85 (132)
                      +.|..|+..|
T Consensus        46 W~C~~Cg~~~   55 (83)
T 1vq8_Z           46 WQCSYCDYKF   55 (83)
T ss_dssp             EEETTTCCEE
T ss_pred             EECCCCCCEe
Confidence            4444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	5e-09
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	1e-04
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	2e-04
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-07
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	1e-04
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	3e-07
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	0.003
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	4e-07
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	7e-07
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	9e-07
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	1e-06
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-05
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	2e-06
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	4e-06
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	1e-04
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	6e-06
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	9e-06
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	9e-04
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	1e-05
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	9e-05
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	2e-04
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	3e-04
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	3e-04
d1ubdc3	30	g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger	0.001
d1x6ea2	26	g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (	0.002
d1ncsa_	47	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	0.002

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (111), Expect = 5e-09
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 73  EKPYQCSQCSKSFFSKYDHKIHSR-VHTGEKPYACE 107
            KPY C  C K F        H + VHT E+P+ C+
Sbjct: 3   GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (82), Expect = 1e-04
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 99  TGEKPYACEFCPLTFRHSSHLFRHRRSLH 127
           +  KPY C+ C   F    HL  H + +H
Sbjct: 1   SVGKPYICQSCGKGFSRPDHLNGHIKQVH 29

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (80), Expect = 2e-04
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)

Query: 38 SEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQC 78
          S  +P + C+    C + F+  + LN HIK+ H  E+P++C
Sbjct: 1  SVGKP-YICQ---SCGKGFSRPDHLNGHIKQVHTSERPHKC 37

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (100), Expect = 2e-07
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 96  RVHTGEKPYACEFCPLTFRHSSHLFRHRRSLH 127
           R H+GEKPY C  C   F  S  +  H    H
Sbjct: 1   RTHSGEKPYECYICHARFTQSGTMKMHILQKH 32

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 1e-04
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHS-RVHTGE 101
           R H  EKPY+C  C   F      K+H  + HT  
Sbjct: 1   RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.6 bits (98), Expect = 3e-07
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
            +R  TG KP+ C  C  +F  S HL  HR+
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 31.6 bits (72), Expect = 0.003
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTG 100
           R     KP+QC  C +SF       +H + H  
Sbjct: 4   RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (98), Expect = 4e-07
 Identities = 16/32 (50%), Positives = 18/32 (56%)

Query: 70  HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGE 101
           H  EKPY C +C K+F        H RVHTGE
Sbjct: 2   HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (96), Expect = 7e-07
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 97  VHTGEKPYACEFCPLTFRHSSHLFRHRR 124
           +H+GEKPY C  C   F  SS L +H+R
Sbjct: 1   IHSGEKPYGCVECGKAFSRSSILVQHQR 28

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (96), Expect = 9e-07
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 76  YQCSQ--CSKSFFSKYDHKIHSRVHTGEKPYACEF 108
           + C +  C KSF  K   K H ++H+  + Y CEF
Sbjct: 2   FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (95), Expect = 1e-06
 Identities = 17/32 (53%), Positives = 18/32 (56%)

Query: 96  RVHTGEKPYACEFCPLTFRHSSHLFRHRRSLH 127
           R HTGEKPYAC  C  TFR    L  H +  H
Sbjct: 1   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 32

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (86), Expect = 2e-05
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 68  RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
           R H  EKPY CS C K+F  K    +H + +    
Sbjct: 1   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 39.5 bits (93), Expect = 2e-06
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 74  KPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
           + + C  C+++F  +   K H R HT EK
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (91), Expect = 4e-06
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 94  HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
                   + Y C+ C  +F HSS L +HRR
Sbjct: 3   SEWQQRERRRYKCDECGKSFSHSSDLSKHRR 33

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 1e-04
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 67  KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGE 101
           +   ++ + Y+C +C KSF    D   H R HTGE
Sbjct: 4   EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 6e-06
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 73  EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
           +K Y C QC KSF  K     H  +H G +PY C  C   F+   HL  H +
Sbjct: 1   DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (89), Expect = 9e-06
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 73  EKPYQCSQCSKSFFSKYDHKIHSRVHTG 100
           +KP+QC  C ++F        H R HTG
Sbjct: 1   QKPFQCRICMRNFSRSDHLTTHIRTHTG 28

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.6 bits (75), Expect = 9e-04
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 101 EKPYACEFCPLTFRHSSHLFRHRR 124
           +KP+ C  C   F  S HL  H R
Sbjct: 1   QKPFQCRICMRNFSRSDHLTTHIR 24

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (87), Expect = 1e-05
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 74  KPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
           K + C +C K F        H + H  +K
Sbjct: 1   KKFACPECPKRFMRSDHLSKHIKTHQNKK 29

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (82), Expect = 9e-05
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 74  KPYQCS--QCSKSFFSKYDHKIHSRVHTGEK 102
           +P+ C+   C K F    + + H R HTGEK
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (80), Expect = 2e-04
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 70  HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGE 101
              ++P+ C  C  +F +K +   H +VHT  
Sbjct: 2   SSGKRPFVCRICLSAFTTKANCARHLKVHTDT 33

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.0 bits (78), Expect = 3e-04
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 98  HTGEKPYACEFCPLTFRHSSHLFRHRR 124
            +G++P+ C  C   F   ++  RH +
Sbjct: 2   SSGKRPFVCRICLSAFTTKANCARHLK 28

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (78), Expect = 3e-04
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 74  KPYQCSQ--CSKSFFSKYDHKIHSRVHTGE 101
           KP++C+   C KS+    + K H R HTGE
Sbjct: 1   KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.0 bits (73), Expect = 0.001
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 74  KPYQCSQ--CSKSFFSKYDHKIHSRVHTGE 101
           KP+QC+   C K F   ++ + H R+HTG+
Sbjct: 1   KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.8 bits (73), Expect = 0.002
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 74 KPYQCSQCSKSFFSKYDHKIHSRVHT 99
          KPY+C +C K+F        H R+HT
Sbjct: 1  KPYKCLECGKAFSQNSGLINHQRIHT 26

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 31.8 bits (72), Expect = 0.002
 Identities = 9/46 (19%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 59  RNMLNIHIKRDHQKEKPYQCSQC--SKSFFSKYDHKIHSRVHTGEK 102
           R  ++ ++K     +K ++C     +K+F  +Y+ + H + H  ++
Sbjct: 4   RGSIDKYVK--EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.79
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.59
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.53
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.52
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.5
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.46
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.44
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.41
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.39
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.37
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.37
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.37
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.34
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.33
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.29
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.25
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.22
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.21
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.17
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.16
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.15
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.15
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.13
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.13
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.12
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.1
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.07
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.07
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.0
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.99
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.99
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.91
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.85
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.82
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.8
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.72
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.72
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.71
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.69
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.63
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.61
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.58
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.57
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.55
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.5
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.49
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	98.43
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.37
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.27
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.23
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.21
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.21
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.2
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.2
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.17
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.17
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.14
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.12
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.01
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.97
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.95
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.95
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.93
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.89
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.84
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.83
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.8
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.78
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.74
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.72
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.66
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.56
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.56
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	97.55
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.55
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.53
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.52
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.46
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.45
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	97.32
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.27
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.25
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.24
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.23
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.21
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	97.2
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.18
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.15
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.09
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.01
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.99
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.95
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.94
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.94
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.81
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	96.8
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.7
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.43
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	96.18
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	96.14
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.77
d1y0jb1	36	U-shaped transcription factor, different fingers {	95.49
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	95.36
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.25
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.21
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	94.94
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	94.83
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	94.79
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.79
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.74
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	94.64
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	94.59
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	93.27
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	93.15
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.7
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	92.48
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	90.49
d2gmga1	105	Hypothetical protein PF0610 {Pyrococcus furiosus [	89.9
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	89.7
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	88.31
d1wjpa2	26	Zinc finger protein 295, ZNF295 {Human (Homo sapie	87.83
d1fu9a_	36	U-shaped transcription factor, different fingers {	87.57
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	87.18
d2glia1	32	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	83.55
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	83.24
d1akya2	38	Microbial and mitochondrial ADK, insert "zinc fing	83.04
d2ghfa1	58	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	82.96
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	81.97
d2ct5a1	60	Zinc finger BED domain-containing protein 1 {Human	80.77

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.3e-20  Score=88.29  Aligned_cols=53  Identities=36%  Similarity=0.743  Sum_probs=50.5

Q ss_pred             CCCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccchHHHHHHHhh
Q psy6628          73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSL  126 (132)
Q Consensus        73 ~~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  126 (132)
                      +|||.|+ ||+.|.....|..|+.+|++++||.|.+|++.|.+.+.|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            5799995 9999999999999999999999999999999999999999999875

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=9.3e-16  Score=72.91  Aligned_cols=53  Identities=26%  Similarity=0.620  Sum_probs=42.1

Q ss_pred             ceeeeCCCCccccCChhHHHHHHHhhcCCCCCCCccccCCCCCCcccccChHHHHhhhhhcc
Q psy6628           9 RVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDH   70 (132)
Q Consensus         9 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~l~~h~~~~~   70 (132)
                      +++|+| .||+.|.....|..|+++|.+   +.| |.|+   .|++.|.....|..|+ ++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~---ekp-y~C~---~C~k~F~~~~~L~~H~-r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLG---LRP-YGCG---VCGKKFKMKHHLVGHM-KIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSC---CCS-EECT---TTSCEESSSHHHHHHH-TTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhcccc---ccC-CcCC---CcCCEecCHHHHHHHH-hcC
Confidence            568888 488888888888888888877   555 8888   8888888888888887 443

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4e-16  Score=68.55  Aligned_cols=37  Identities=30%  Similarity=0.515  Sum_probs=29.1

Q ss_pred             HHHHHhcCCCCccCCCchhccccchHHHHHHHhhhhh
Q psy6628          93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQM  129 (132)
Q Consensus        93 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  129 (132)
                      +|+.+|++++||.|.+|++.|...++|..|+++|.||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            4667778888888888888888888888888887765

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.3e-15  Score=63.59  Aligned_cols=33  Identities=42%  Similarity=0.760  Sum_probs=28.1

Q ss_pred             HhcCCCCccCCCchhccccchHHHHHHHhhhhh
Q psy6628          97 VHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQM  129 (132)
Q Consensus        97 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  129 (132)
                      +|++++||+|.+|++.|.+.++|..|+++|.||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            378888888888988888888888888888775

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.2e-15  Score=64.72  Aligned_cols=35  Identities=49%  Similarity=0.806  Sum_probs=29.6

Q ss_pred             HHhcCCCCccCCCchhccccchHHHHHHHhhhhhc
Q psy6628          96 RVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus        96 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      ++|+||+||+|.+|++.|...++|..|+++|++++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            35888999999999999999999999998887753

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=7.7e-15  Score=63.40  Aligned_cols=34  Identities=35%  Similarity=0.640  Sum_probs=29.9

Q ss_pred             HhcCCCCccCCCchhccccchHHHHHHHhhhhhc
Q psy6628          97 VHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus        97 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      +|+||+||+|++|++.|+..++|..|+..+|+++
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~~   35 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKHTEN   35 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccccCCC
Confidence            5889999999999999999999999988777764

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=1.1e-14  Score=63.45  Aligned_cols=34  Identities=38%  Similarity=0.655  Sum_probs=28.5

Q ss_pred             HHHHhcCCCCccCCCchhccccchHHHHHHHhhh
Q psy6628          94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLH  127 (132)
Q Consensus        94 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~  127 (132)
                      |.++|++|+||+|.+|++.|++.++|..|++.|-
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            5677888888888888888888888888888764

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.1e-14  Score=61.94  Aligned_cols=36  Identities=39%  Similarity=0.764  Sum_probs=25.4

Q ss_pred             CCCccCCcccccccChhhHHHHHH-HhcCCCCccCCC
Q psy6628          73 EKPYQCSQCSKSFFSKYDHKIHSR-VHTGEKPYACEF  108 (132)
Q Consensus        73 ~~~~~c~~C~~~~~~~~~l~~h~~-~h~~~~~~~C~~  108 (132)
                      +|||.|..||+.|...+.|..|++ +|++++||+|.+
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            467777777777777777777764 577777777753

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=3.5e-14  Score=60.67  Aligned_cols=32  Identities=22%  Similarity=0.611  Sum_probs=26.6

Q ss_pred             hcCCCCccCCCchhccccchHHHHHHHhhhhh
Q psy6628          98 HTGEKPYACEFCPLTFRHSSHLFRHRRSLHQM  129 (132)
Q Consensus        98 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  129 (132)
                      |+||+||+|.+|++.|++.++|..|+++|.+.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            57888888888888888888888888887653

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=7.6e-14  Score=56.54  Aligned_cols=28  Identities=36%  Similarity=0.738  Sum_probs=24.8

Q ss_pred             CCCccCCCchhccccchHHHHHHHhhhh
Q psy6628         101 EKPYACEFCPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus       101 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~  128 (132)
                      ||||+|++|++.|+.+++|..|+++|.|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6899999999999999999999998875

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=7.4e-14  Score=61.11  Aligned_cols=33  Identities=27%  Similarity=0.458  Sum_probs=30.8

Q ss_pred             CCCCccCCCchhccccchHHHHHHH-hhhhhccC
Q psy6628         100 GEKPYACEFCPLTFRHSSHLFRHRR-SLHQMYEQ  132 (132)
Q Consensus       100 ~~~~~~C~~C~~~f~~~~~l~~H~~-~~~~~~~~  132 (132)
                      .++||+|.+|++.|...++|..|++ +|.++|||
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy   35 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPH   35 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCC
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCc
Confidence            4799999999999999999999986 69999998

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.37  E-value=1e-13  Score=56.82  Aligned_cols=29  Identities=34%  Similarity=0.665  Sum_probs=24.4

Q ss_pred             CCccCCCchhccccchHHHHHHHhhhhhc
Q psy6628         102 KPYACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      +||.|++|++.|+..+.|.+|+++|.|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            57888888888888888888888888875

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.6e-13  Score=56.16  Aligned_cols=29  Identities=34%  Similarity=0.653  Sum_probs=25.2

Q ss_pred             CCccCCCchhccccchHHHHHHHhhhhhc
Q psy6628         102 KPYACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      |||.|++|++.|.+++.|.+|+++|.|+|
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            68889999999999999999999888875

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.5e-13  Score=59.41  Aligned_cols=37  Identities=35%  Similarity=0.654  Sum_probs=33.9

Q ss_pred             hhhhhccCCCCCccCCcccccccChhhHHHHHHHhcCC
Q psy6628          64 IHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGE  101 (132)
Q Consensus        64 ~h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~  101 (132)
                      +|+ .+|++++||.|..||++|...+.|..|+++|+||
T Consensus         2 rH~-~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSE-WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCC-SCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccC-cccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            466 7799999999999999999999999999999986

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5.2e-13  Score=56.19  Aligned_cols=33  Identities=48%  Similarity=0.776  Sum_probs=30.8

Q ss_pred             ccCCCCCccCCcccccccChhhHHHHHHHhcCC
Q psy6628          69 DHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGE  101 (132)
Q Consensus        69 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~  101 (132)
                      +|++++||.|..|+++|...+.|..|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            488999999999999999999999999999986

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=1.2e-13  Score=63.06  Aligned_cols=40  Identities=18%  Similarity=0.349  Sum_probs=30.1

Q ss_pred             hHHHHHHHhcCCCCccCCC--chhccccchHHHHHHHhhhhhc
Q psy6628          90 DHKIHSRVHTGEKPYACEF--CPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus        90 ~l~~h~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      .+..|+. |.+++||.|.+  |++.|+..++|..|+++|.|+|
T Consensus         6 ~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            3445554 77888888876  8888888888888888887775

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.4e-12  Score=51.48  Aligned_cols=26  Identities=38%  Similarity=0.700  Sum_probs=22.4

Q ss_pred             CCccCCCchhccccchHHHHHHHhhh
Q psy6628         102 KPYACEFCPLTFRHSSHLFRHRRSLH  127 (132)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H~~~~~  127 (132)
                      |||+|.+||+.|...+.|..|+++|.
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            68899999999999999999988873

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=4.4e-12  Score=51.22  Aligned_cols=28  Identities=32%  Similarity=0.778  Sum_probs=25.7

Q ss_pred             ceeeeCCCCccccCChhHHHHHHHhhcC
Q psy6628           9 RVVFTCQVCSKIFSYENGLKAHVRNKHG   36 (132)
Q Consensus         9 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~   36 (132)
                      ++||+|++|++.|....+|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5799999999999999999999999875

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5.8e-12  Score=54.25  Aligned_cols=33  Identities=36%  Similarity=0.628  Sum_probs=30.7

Q ss_pred             ccCCCCCccCCcccccccChhhHHHHHHHhcCC
Q psy6628          69 DHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGE  101 (132)
Q Consensus        69 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~  101 (132)
                      +|+|++||.|..|+++|...+.|..|+++|+++
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            589999999999999999999999999999865

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=1.5e-11  Score=52.27  Aligned_cols=31  Identities=16%  Similarity=0.458  Sum_probs=28.7

Q ss_pred             cccceeeeCCCCccccCChhHHHHHHHhhcC
Q psy6628           6 NIHRVVFTCQVCSKIFSYENGLKAHVRNKHG   36 (132)
Q Consensus         6 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~   36 (132)
                      +++++||+|.+|++.|....+|..|+++|..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCC
Confidence            6789999999999999999999999999875

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.1e-11  Score=48.80  Aligned_cols=26  Identities=35%  Similarity=0.618  Sum_probs=23.9

Q ss_pred             eeeeCCCCccccCChhHHHHHHHhhc
Q psy6628          10 VVFTCQVCSKIFSYENGLKAHVRNKH   35 (132)
Q Consensus        10 ~~~~C~~C~~~f~~~~~l~~h~~~~~   35 (132)
                      +||+|.+||+.|.....|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            58999999999999999999999874

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=1.3e-11  Score=53.46  Aligned_cols=35  Identities=29%  Similarity=0.553  Sum_probs=31.2

Q ss_pred             hhhhccCCCCCccCCcccccccChhhHHHHHHHhcC
Q psy6628          65 HIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTG  100 (132)
Q Consensus        65 h~~~~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~  100 (132)
                      |. +.|++++||.|..|+++|...+.|..|+++|..
T Consensus         2 h~-R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 ST-RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CS-STTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CC-CccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            44 679999999999999999999999999998864

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.15  E-value=1.3e-11  Score=50.40  Aligned_cols=29  Identities=34%  Similarity=0.688  Sum_probs=23.8

Q ss_pred             CCccCCcccccccChhhHHHHHHHhcCCC
Q psy6628          74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEK  102 (132)
Q Consensus        74 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~~  102 (132)
                      +||.|.+|+++|...+.|..|+++|+||+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            57888888888888888888888888875

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.4e-11  Score=50.55  Aligned_cols=28  Identities=32%  Similarity=0.565  Sum_probs=23.0

Q ss_pred             CCccCCC--chhccccchHHHHHHHhhhhh
Q psy6628         102 KPYACEF--CPLTFRHSSHLFRHRRSLHQM  129 (132)
Q Consensus       102 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~~  129 (132)
                      +||.|++  |++.|+..+.|..|+++|.||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5788877  888888888888888888775

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.3e-11  Score=52.11  Aligned_cols=32  Identities=38%  Similarity=0.813  Sum_probs=24.2

Q ss_pred             ccCCc--ccccccChhhHHHHHHHhcCCCCccCC
Q psy6628          76 YQCSQ--CSKSFFSKYDHKIHSRVHTGEKPYACE  107 (132)
Q Consensus        76 ~~c~~--C~~~~~~~~~l~~h~~~h~~~~~~~C~  107 (132)
                      |.|+.  |+++|...+.|.+|+++|++++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            45655  778888888888888888888888775

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=3e-11  Score=49.21  Aligned_cols=29  Identities=28%  Similarity=0.643  Sum_probs=24.1

Q ss_pred             CCccCCcccccccChhhHHHHHHHhcCCC
Q psy6628          74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEK  102 (132)
Q Consensus        74 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~~  102 (132)
                      |||.|..|++.|...+.|..|+++|++|+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            57888888888888888888888888875

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.6e-11  Score=50.38  Aligned_cols=28  Identities=32%  Similarity=0.558  Sum_probs=22.7

Q ss_pred             CCccCCC--chhccccchHHHHHHHhhhhh
Q psy6628         102 KPYACEF--CPLTFRHSSHLFRHRRSLHQM  129 (132)
Q Consensus       102 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~~  129 (132)
                      +||.|++  |++.|+..+.|..|+++|.||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5788876  888888888888888888775

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=5.1e-11  Score=51.14  Aligned_cols=33  Identities=33%  Similarity=0.568  Sum_probs=28.7

Q ss_pred             ccCCCCCccCCcccccccChhhHHHHHHHhcCC
Q psy6628          69 DHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGE  101 (132)
Q Consensus        69 ~~~~~~~~~c~~C~~~~~~~~~l~~h~~~h~~~  101 (132)
                      +|+|++||.|+.|++.|...++|..|+..++++
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            589999999999999999999999998665443

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.4e-11  Score=50.31  Aligned_cols=29  Identities=31%  Similarity=0.724  Sum_probs=23.0

Q ss_pred             CCccCC--CchhccccchHHHHHHHhhhhhc
Q psy6628         102 KPYACE--FCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus       102 ~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      +||.|+  .|++.|+..++|..|+++|.|+|
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            578885  48888888888888888887775

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=1.4e-10  Score=48.12  Aligned_cols=28  Identities=32%  Similarity=0.908  Sum_probs=23.6

Q ss_pred             CCCccCCC--chhccccchHHHHHHHhhhh
Q psy6628         101 EKPYACEF--CPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus       101 ~~~~~C~~--C~~~f~~~~~l~~H~~~~~~  128 (132)
                      |+||.|++  |++.|+..++|.+|+++|..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            68888977  99999999999999888764

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=8.7e-11  Score=50.27  Aligned_cols=29  Identities=21%  Similarity=0.454  Sum_probs=27.3

Q ss_pred             ccCCC--chhccccchHHHHHHHhhhhhccC
Q psy6628         104 YACEF--CPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus       104 ~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      |.|++  |++.|...+.|.+|+++|.|++||
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy   32 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDY   32 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCE
Confidence            67876  999999999999999999999997

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.99  E-value=6.5e-11  Score=53.84  Aligned_cols=40  Identities=20%  Similarity=0.593  Sum_probs=35.3

Q ss_pred             HHHhhhhhccCCCCCccCCc--ccccccChhhHHHHHHHhcCCC
Q psy6628          61 MLNIHIKRDHQKEKPYQCSQ--CSKSFFSKYDHKIHSRVHTGEK  102 (132)
Q Consensus        61 ~l~~h~~~~~~~~~~~~c~~--C~~~~~~~~~l~~h~~~h~~~~  102 (132)
                      .+..|+ . |++++||.|.+  |++.|...+.|..|+++|+||+
T Consensus         6 ~l~~h~-~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           6 SIDKYV-K-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSC-E-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hhcchh-h-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            356665 3 99999999987  9999999999999999999985

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=2.1e-10  Score=46.51  Aligned_cols=27  Identities=41%  Similarity=0.752  Sum_probs=22.0

Q ss_pred             CCccCCC--chhccccchHHHHHHHhhhh
Q psy6628         102 KPYACEF--CPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus       102 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~  128 (132)
                      +||+|++  |++.|+..+.|.+|+++|.|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            5788876  88888888888888888765

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.2e-09  Score=44.56  Aligned_cols=28  Identities=46%  Similarity=0.758  Sum_probs=21.6

Q ss_pred             CCccCCc--ccccccChhhHHHHHHHhcCC
Q psy6628          74 KPYQCSQ--CSKSFFSKYDHKIHSRVHTGE  101 (132)
Q Consensus        74 ~~~~c~~--C~~~~~~~~~l~~h~~~h~~~  101 (132)
                      |||.|..  |+++|...+.|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5777777  888888888888888887765

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.3e-09  Score=44.59  Aligned_cols=28  Identities=43%  Similarity=1.006  Sum_probs=23.1

Q ss_pred             CCccCCc--ccccccChhhHHHHHHHhcCC
Q psy6628          74 KPYQCSQ--CSKSFFSKYDHKIHSRVHTGE  101 (132)
Q Consensus        74 ~~~~c~~--C~~~~~~~~~l~~h~~~h~~~  101 (132)
                      |||.|..  |+++|...+.|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5788876  888888888888888888875

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=8.7e-10  Score=44.17  Aligned_cols=25  Identities=36%  Similarity=0.784  Sum_probs=20.1

Q ss_pred             CCccCCC--chhccccchHHHHHHHhh
Q psy6628         102 KPYACEF--CPLTFRHSSHLFRHRRSL  126 (132)
Q Consensus       102 ~~~~C~~--C~~~f~~~~~l~~H~~~~  126 (132)
                      +||.|++  |++.|+..++|..|++.|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            5788876  888888888888888776

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=3.3e-09  Score=42.88  Aligned_cols=27  Identities=33%  Similarity=0.712  Sum_probs=22.8

Q ss_pred             eeeeCCC--CccccCChhHHHHHHHhhcC
Q psy6628          10 VVFTCQV--CSKIFSYENGLKAHVRNKHG   36 (132)
Q Consensus        10 ~~~~C~~--C~~~f~~~~~l~~h~~~~~~   36 (132)
                      +||+|++  |++.|....+|.+|+++|.|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            5788887  99999999999999888864

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=3.4e-09  Score=40.98  Aligned_cols=26  Identities=38%  Similarity=0.756  Sum_probs=22.5

Q ss_pred             CCCccCCCchhccccchHHHHHHHhh
Q psy6628         101 EKPYACEFCPLTFRHSSHLFRHRRSL  126 (132)
Q Consensus       101 ~~~~~C~~C~~~f~~~~~l~~H~~~~  126 (132)
                      |+||.|.+||+.|+.+....+|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            68899999999999888888888876

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=5.2e-09  Score=43.08  Aligned_cols=29  Identities=41%  Similarity=0.851  Sum_probs=18.3

Q ss_pred             CCccCCc--ccccccChhhHHHHHHHhcCCC
Q psy6628          74 KPYQCSQ--CSKSFFSKYDHKIHSRVHTGEK  102 (132)
Q Consensus        74 ~~~~c~~--C~~~~~~~~~l~~h~~~h~~~~  102 (132)
                      +||.|+.  |+++|...++|..|+++|++|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            4566643  6666666666666666666654

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=3.4e-09  Score=41.59  Aligned_cols=27  Identities=33%  Similarity=0.850  Sum_probs=24.1

Q ss_pred             CCccCCC--chhccccchHHHHHHHhhhh
Q psy6628         102 KPYACEF--CPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus       102 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~  128 (132)
                      +||.|.+  |++.|...++|++|++.+||
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            6899977  99999999999999998875

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=3.4e-09  Score=42.54  Aligned_cols=29  Identities=41%  Similarity=0.785  Sum_probs=17.0

Q ss_pred             ccCCcccccccChhhHHHHHHHhcCCCCc
Q psy6628          76 YQCSQCSKSFFSKYDHKIHSRVHTGEKPY  104 (132)
Q Consensus        76 ~~c~~C~~~~~~~~~l~~h~~~h~~~~~~  104 (132)
                      ..|..||+.|.....|.+|..+|.+|+||
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            34555666666666666666566666555

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.61  E-value=1.3e-08  Score=42.03  Aligned_cols=28  Identities=21%  Similarity=0.523  Sum_probs=23.0

Q ss_pred             ceeeeCCC--CccccCChhHHHHHHHhhcC
Q psy6628           9 RVVFTCQV--CSKIFSYENGLKAHVRNKHG   36 (132)
Q Consensus         9 ~~~~~C~~--C~~~f~~~~~l~~h~~~~~~   36 (132)
                      ++||.|++  |++.|....+|.+|+++|..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            46788887  88888888888888888764

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=9e-09  Score=41.13  Aligned_cols=26  Identities=27%  Similarity=0.631  Sum_probs=21.1

Q ss_pred             eeeeCCC--CccccCChhHHHHHHHhhc
Q psy6628          10 VVFTCQV--CSKIFSYENGLKAHVRNKH   35 (132)
Q Consensus        10 ~~~~C~~--C~~~f~~~~~l~~h~~~~~   35 (132)
                      +||.|+.  |++.|....+|..|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            4788887  8888888888888888773

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=7.9e-09  Score=38.66  Aligned_cols=26  Identities=31%  Similarity=0.545  Sum_probs=18.1

Q ss_pred             CccCCCchhccccchHHHHHHHhhhh
Q psy6628         103 PYACEFCPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus       103 ~~~C~~C~~~f~~~~~l~~H~~~~~~  128 (132)
                      |.+|++|++-|+.+..|..|++.|.|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            45677777777777777777776643

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.2e-08  Score=39.11  Aligned_cols=28  Identities=43%  Similarity=0.815  Sum_probs=23.0

Q ss_pred             CCCccCCCchhccccchHHHHHHHhhhh
Q psy6628         101 EKPYACEFCPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus       101 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~  128 (132)
                      |+||+|..|+..-..++.|..|++.|.|
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            5788888888888888888888888765

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.4e-08  Score=39.12  Aligned_cols=28  Identities=39%  Similarity=0.788  Sum_probs=19.9

Q ss_pred             CCCccCCCchhccccchHHHHHHHhhhh
Q psy6628         101 EKPYACEFCPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus       101 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~  128 (132)
                      |+||.|++|.+.|..+.-+.-|.++|-|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            4677777777777777777777776644

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=3.1e-08  Score=39.69  Aligned_cols=31  Identities=39%  Similarity=0.514  Sum_probs=20.4

Q ss_pred             CCccCCCchhccccchHHHHHHHhhhhhccC
Q psy6628         102 KPYACEFCPLTFRHSSHLFRHRRSLHQMYEQ  132 (132)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  132 (132)
                      +...|..||+.|.....|.+|.-+|.+||||
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            3445666777776666666666666666665

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=9.2e-08  Score=37.00  Aligned_cols=28  Identities=32%  Similarity=0.662  Sum_probs=24.4

Q ss_pred             CCccCCCchhccccchHHHHHHHhhhhh
Q psy6628         102 KPYACEFCPLTFRHSSHLFRHRRSLHQM  129 (132)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~  129 (132)
                      +||+|..|.......++|..|++..|++
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccccccccccccchhhhhhhhccccc
Confidence            6899999999999999999999887764

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=9.4e-08  Score=35.67  Aligned_cols=25  Identities=40%  Similarity=0.761  Sum_probs=17.8

Q ss_pred             eeeCCCCccccCChhHHHHHHHhhc
Q psy6628          11 VFTCQVCSKIFSYENGLKAHVRNKH   35 (132)
Q Consensus        11 ~~~C~~C~~~f~~~~~l~~h~~~~~   35 (132)
                      |++|..|++.|..+..|..|++.|.
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            3567777777777777777777664

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.27  E-value=3.1e-07  Score=35.38  Aligned_cols=27  Identities=33%  Similarity=0.839  Sum_probs=23.6

Q ss_pred             CCCccCCcccccccChhhHHHHHHHhc
Q psy6628          73 EKPYQCSQCSKSFFSKYDHKIHSRVHT   99 (132)
Q Consensus        73 ~~~~~c~~C~~~~~~~~~l~~h~~~h~   99 (132)
                      ++||.|..||+.|.......+|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            478999999999999999999988874

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=6.1e-07  Score=35.04  Aligned_cols=29  Identities=31%  Similarity=0.676  Sum_probs=23.7

Q ss_pred             ceeeeCCCCccccCChhHHHHHHHhhcCC
Q psy6628           9 RVVFTCQVCSKIFSYENGLKAHVRNKHGS   37 (132)
Q Consensus         9 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   37 (132)
                      ++||.|++|+..|..+.-+.-|.+.|.+.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            46888888888888888888888888764

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=3.1e-07  Score=34.82  Aligned_cols=26  Identities=38%  Similarity=0.641  Sum_probs=22.9

Q ss_pred             CCccCCCchhccccchHHHHHHHhhh
Q psy6628         102 KPYACEFCPLTFRHSSHLFRHRRSLH  127 (132)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H~~~~~  127 (132)
                      +||+|..|...-...++|.+|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            78999999998899999999998864

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=9e-07  Score=33.95  Aligned_cols=29  Identities=34%  Similarity=0.693  Sum_probs=25.9

Q ss_pred             cceeeeCCCCccccCChhHHHHHHHhhcC
Q psy6628           8 HRVVFTCQVCSKIFSYENGLKAHVRNKHG   36 (132)
Q Consensus         8 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~   36 (132)
                      ++.+|+|..|..+|..+-+|+.|+..|.+
T Consensus         1 teqvftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           1 SEQVFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             CcceEEeHHHHHHHHHHHhheeeeecccC
Confidence            36789999999999999999999998875

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=4e-07  Score=34.99  Aligned_cols=26  Identities=31%  Similarity=0.596  Sum_probs=16.3

Q ss_pred             ccCCCchhccccchHHHHHHHhhhhh
Q psy6628         104 YACEFCPLTFRHSSHLFRHRRSLHQM  129 (132)
Q Consensus       104 ~~C~~C~~~f~~~~~l~~H~~~~~~~  129 (132)
                      |.|++|+....-+|.|++|+++|.++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            55666666666666666666666554

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=5.3e-07  Score=34.27  Aligned_cols=23  Identities=43%  Similarity=0.839  Sum_probs=10.2

Q ss_pred             CCcccccccChhhHHHHHHHhcC
Q psy6628          78 CSQCSKSFFSKYDHKIHSRVHTG  100 (132)
Q Consensus        78 c~~C~~~~~~~~~l~~h~~~h~~  100 (132)
                      |..||++|...+.|++|+..|++
T Consensus         5 c~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           5 CAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             CTTTCCEESSHHHHHHHGGGTSC
T ss_pred             HHHHhHHHHHHHHHHHHhhcccC
Confidence            44444444444444444444443

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=2.9e-07  Score=35.00  Aligned_cols=26  Identities=31%  Similarity=0.370  Sum_probs=23.6

Q ss_pred             ccCCCchhccccchHHHHHHHhhhhh
Q psy6628         104 YACEFCPLTFRHSSHLFRHRRSLHQM  129 (132)
Q Consensus       104 ~~C~~C~~~f~~~~~l~~H~~~~~~~  129 (132)
                      ..|.+||+.|..++.|++|+-.|.|+
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            57999999999999999999988775

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=6.9e-07  Score=34.12  Aligned_cols=28  Identities=29%  Similarity=0.598  Sum_probs=23.8

Q ss_pred             ceeeeCCCCccccCChhHHHHHHHhhcC
Q psy6628           9 RVVFTCQVCSKIFSYENGLKAHVRNKHG   36 (132)
Q Consensus         9 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~   36 (132)
                      ++||+|+.|.....+.+.|..|++.|.+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            4689999999888888999999888765

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=6.3e-07  Score=33.57  Aligned_cols=26  Identities=23%  Similarity=0.262  Sum_probs=20.0

Q ss_pred             cCCCchhccccchHHHHHHHhhhhhc
Q psy6628         105 ACEFCPLTFRHSSHLFRHRRSLHQMY  130 (132)
Q Consensus       105 ~C~~C~~~f~~~~~l~~H~~~~~~~~  130 (132)
                      +|+.|.+.|.++-.|..|.+.|.|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            57778888888888888887777764

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=8.1e-07  Score=37.51  Aligned_cols=27  Identities=41%  Similarity=0.803  Sum_probs=22.7

Q ss_pred             cCCCCccCCCchhccccchHHHHHHHh
Q psy6628          99 TGEKPYACEFCPLTFRHSSHLFRHRRS  125 (132)
Q Consensus        99 ~~~~~~~C~~C~~~f~~~~~l~~H~~~  125 (132)
                      +|-|||.|.+|++.|..+.++.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            356899999999999999999888643

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.8e-06  Score=33.26  Aligned_cols=28  Identities=25%  Similarity=0.796  Sum_probs=22.8

Q ss_pred             CCccCCCchhccccchHHHHHHHhhhhh
Q psy6628         102 KPYACEFCPLTFRHSSHLFRHRRSLHQM  129 (132)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~  129 (132)
                      +||+|..|+....++++|..|++..|+.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            5788888888888888888888877764

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.97  E-value=1.7e-06  Score=31.89  Aligned_cols=23  Identities=39%  Similarity=0.761  Sum_probs=19.2

Q ss_pred             ccCCCchhccccchHHHHHHHhh
Q psy6628         104 YACEFCPLTFRHSSHLFRHRRSL  126 (132)
Q Consensus       104 ~~C~~C~~~f~~~~~l~~H~~~~  126 (132)
                      |+|..|.++|..++.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            67888888888888888888775

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=4.9e-06  Score=31.90  Aligned_cols=27  Identities=30%  Similarity=0.438  Sum_probs=21.5

Q ss_pred             ccCCcccccccChhhHHHHHHHhcCCC
Q psy6628          76 YQCSQCSKSFFSKYDHKIHSRVHTGEK  102 (132)
Q Consensus        76 ~~c~~C~~~~~~~~~l~~h~~~h~~~~  102 (132)
                      |.|+.|+.....++.|.+|+++|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            678888888888888888888887763

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.95  E-value=3.2e-06  Score=35.44  Aligned_cols=28  Identities=21%  Similarity=0.507  Sum_probs=24.3

Q ss_pred             ceeeeCCCCccccCChhHHHHHHHhhcC
Q psy6628           9 RVVFTCQVCSKIFSYENGLKAHVRNKHG   36 (132)
Q Consensus         9 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~   36 (132)
                      .+.|+|..|++.|.+..+|-.|++.|..
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~   30 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRR   30 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcc
Confidence            3569999999999999999999988864

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.93  E-value=2.8e-06  Score=32.51  Aligned_cols=25  Identities=36%  Similarity=0.699  Sum_probs=20.1

Q ss_pred             CCccCCC--chhccccchHHHHHHHhh
Q psy6628         102 KPYACEF--CPLTFRHSSHLFRHRRSL  126 (132)
Q Consensus       102 ~~~~C~~--C~~~f~~~~~l~~H~~~~  126 (132)
                      .||+|+.  |++.|+..+-|++|.+.|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4788864  888888888888888775

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.6e-06  Score=34.14  Aligned_cols=26  Identities=38%  Similarity=0.830  Sum_probs=19.4

Q ss_pred             CCccCCC--chhccccchHHHHHH-Hhhh
Q psy6628         102 KPYACEF--CPLTFRHSSHLFRHR-RSLH  127 (132)
Q Consensus       102 ~~~~C~~--C~~~f~~~~~l~~H~-~~~~  127 (132)
                      +||.|++  |.+.|+..++..+|+ +.|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            5788876  888888888888886 4443

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=8.8e-06  Score=30.73  Aligned_cols=26  Identities=19%  Similarity=0.460  Sum_probs=22.8

Q ss_pred             eeeeCCCCccccCChhHHHHHHHhhc
Q psy6628          10 VVFTCQVCSKIFSYENGLKAHVRNKH   35 (132)
Q Consensus        10 ~~~~C~~C~~~f~~~~~l~~h~~~~~   35 (132)
                      +||+|..|+......+.|..|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            68999999999999999999998874

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.83  E-value=3.1e-06  Score=33.29  Aligned_cols=26  Identities=35%  Similarity=0.883  Sum_probs=21.7

Q ss_pred             CccCCCchhccccchHHHHHHHhhhh
Q psy6628         103 PYACEFCPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus       103 ~~~C~~C~~~f~~~~~l~~H~~~~~~  128 (132)
                      ||.|.+|++.|+.+..|.+|+..-|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            78899999999999999999866544

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.1e-05  Score=33.96  Aligned_cols=25  Identities=24%  Similarity=0.671  Sum_probs=22.5

Q ss_pred             cceeeeCCCCccccCChhHHHHHHH
Q psy6628           8 HRVVFTCQVCSKIFSYENGLKAHVR   32 (132)
Q Consensus         8 ~~~~~~C~~C~~~f~~~~~l~~h~~   32 (132)
                      +.+||.|..|++.|..+..+.+|..
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhh
Confidence            6789999999999999999988864

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=9e-06  Score=31.66  Aligned_cols=26  Identities=27%  Similarity=0.623  Sum_probs=15.3

Q ss_pred             CCccCCc--ccccccChhhHHHHHHHhc
Q psy6628          74 KPYQCSQ--CSKSFFSKYDHKIHSRVHT   99 (132)
Q Consensus        74 ~~~~c~~--C~~~~~~~~~l~~h~~~h~   99 (132)
                      +||.|.+  |++++..++.|.+|+++++
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            3555655  6666666666666666543

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.74  E-value=1e-05  Score=29.69  Aligned_cols=23  Identities=26%  Similarity=0.683  Sum_probs=16.1

Q ss_pred             eeCCCCccccCChhHHHHHHHhh
Q psy6628          12 FTCQVCSKIFSYENGLKAHVRNK   34 (132)
Q Consensus        12 ~~C~~C~~~f~~~~~l~~h~~~~   34 (132)
                      |+|..|...|-.++.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            56777777777777777777665

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.72  E-value=1.3e-05  Score=33.53  Aligned_cols=25  Identities=36%  Similarity=0.587  Sum_probs=12.2

Q ss_pred             CccCCcccccccChhhHHHHHHHhc
Q psy6628          75 PYQCSQCSKSFFSKYDHKIHSRVHT   99 (132)
Q Consensus        75 ~~~c~~C~~~~~~~~~l~~h~~~h~   99 (132)
                      .|.|..|++.|.+...|-.|+..|.
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             ccCCCCCCCccCCcccccchHhhhc
Confidence            3445555555555555555544443

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=2.6e-05  Score=29.76  Aligned_cols=26  Identities=31%  Similarity=0.756  Sum_probs=14.4

Q ss_pred             CccCCcccccccChhhHHHHHHHhcC
Q psy6628          75 PYQCSQCSKSFFSKYDHKIHSRVHTG  100 (132)
Q Consensus        75 ~~~c~~C~~~~~~~~~l~~h~~~h~~  100 (132)
                      .|.|.+|...|.....|..|+.+|+|
T Consensus         4 vftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           4 VFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             eEEeHHHHHHHHHHHhheeeeecccC
Confidence            35555555555555555555555554

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=1.6e-05  Score=30.43  Aligned_cols=23  Identities=35%  Similarity=1.013  Sum_probs=19.9

Q ss_pred             CccCCCchhccccchHHHHHHHh
Q psy6628         103 PYACEFCPLTFRHSSHLFRHRRS  125 (132)
Q Consensus       103 ~~~C~~C~~~f~~~~~l~~H~~~  125 (132)
                      ||.|..|...|..+.+|..|+++
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            68888999999999999999875

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=2.9e-05  Score=32.24  Aligned_cols=26  Identities=31%  Similarity=0.687  Sum_probs=18.0

Q ss_pred             CCCccCC--CchhccccchHHHHHHHhh
Q psy6628         101 EKPYACE--FCPLTFRHSSHLFRHRRSL  126 (132)
Q Consensus       101 ~~~~~C~--~C~~~f~~~~~l~~H~~~~  126 (132)
                      ++||.|.  -|++.|.+...|..|...|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            6777773  4777777777777776654

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.55  E-value=2.2e-05  Score=28.90  Aligned_cols=24  Identities=29%  Similarity=0.757  Sum_probs=21.2

Q ss_pred             ccCCCchhccccchHHHHHHHhhh
Q psy6628         104 YACEFCPLTFRHSSHLFRHRRSLH  127 (132)
Q Consensus       104 ~~C~~C~~~f~~~~~l~~H~~~~~  127 (132)
                      |.|++|-+.|..+.++..|.++.|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            789999999999999999988765

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=3.6e-05  Score=28.19  Aligned_cols=24  Identities=25%  Similarity=0.661  Sum_probs=19.3

Q ss_pred             eeeeCCCCccccCChhHHHHHHHh
Q psy6628          10 VVFTCQVCSKIFSYENGLKAHVRN   33 (132)
Q Consensus        10 ~~~~C~~C~~~f~~~~~l~~h~~~   33 (132)
                      .||+|..|...|.++.+|..|+..
T Consensus         1 mpykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           1 MPYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHh
Confidence            368888888888888888888753

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=5.6e-05  Score=28.13  Aligned_cols=26  Identities=58%  Similarity=1.073  Sum_probs=16.9

Q ss_pred             cCCcccccccChhhHHHHHHHhcCCC
Q psy6628          77 QCSQCSKSFFSKYDHKIHSRVHTGEK  102 (132)
Q Consensus        77 ~c~~C~~~~~~~~~l~~h~~~h~~~~  102 (132)
                      +|+.|.+.|.+...|.-|-+.|+||+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            46666666666666666666666653

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=6e-05  Score=28.94  Aligned_cols=27  Identities=30%  Similarity=0.608  Sum_probs=20.6

Q ss_pred             eeeeCCCCccccCChhHHHHHHHhhcC
Q psy6628          10 VVFTCQVCSKIFSYENGLKAHVRNKHG   36 (132)
Q Consensus        10 ~~~~C~~C~~~f~~~~~l~~h~~~~~~   36 (132)
                      +||.|+.|.....+.++|..|+.+.++
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            467888888887888888888876554

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.46  E-value=5.2e-05  Score=29.71  Aligned_cols=26  Identities=23%  Similarity=0.627  Sum_probs=19.4

Q ss_pred             eeeCCCCccccCChhHHHHHHHhhcC
Q psy6628          11 VFTCQVCSKIFSYENGLKAHVRNKHG   36 (132)
Q Consensus        11 ~~~C~~C~~~f~~~~~l~~h~~~~~~   36 (132)
                      ||.|.+|++.|..+..|.+|+..-++
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            57788888888888888888765443

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=3.7e-05  Score=28.18  Aligned_cols=22  Identities=32%  Similarity=0.673  Sum_probs=18.9

Q ss_pred             CccCCCchhccccchHHHHHHH
Q psy6628         103 PYACEFCPLTFRHSSHLFRHRR  124 (132)
Q Consensus       103 ~~~C~~C~~~f~~~~~l~~H~~  124 (132)
                      ||+|.-|++.|.++-.|+.|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7889999999999988888864

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.32  E-value=0.00013  Score=26.78  Aligned_cols=23  Identities=35%  Similarity=0.787  Sum_probs=18.0

Q ss_pred             eeeCCCCccccCChhHHHHHHHh
Q psy6628          11 VFTCQVCSKIFSYENGLKAHVRN   33 (132)
Q Consensus        11 ~~~C~~C~~~f~~~~~l~~h~~~   33 (132)
                      +|.|+.|.+.|..+.++..|..+
T Consensus         1 vypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           1 VYPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH
T ss_pred             CcCCchhhHHhccccCceEEEEE
Confidence            47888888888888888877654

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.27  E-value=0.00013  Score=27.73  Aligned_cols=24  Identities=42%  Similarity=0.856  Sum_probs=12.1

Q ss_pred             CccCCc--ccccccChhhHHHHHHHh
Q psy6628          75 PYQCSQ--CSKSFFSKYDHKIHSRVH   98 (132)
Q Consensus        75 ~~~c~~--C~~~~~~~~~l~~h~~~h   98 (132)
                      ||.|+.  |++.|...+.|.+|.++|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            344433  555555555555555544

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00014  Score=27.74  Aligned_cols=23  Identities=22%  Similarity=0.621  Sum_probs=17.6

Q ss_pred             eeeCCCCccccCChhHHHHHHHh
Q psy6628          11 VFTCQVCSKIFSYENGLKAHVRN   33 (132)
Q Consensus        11 ~~~C~~C~~~f~~~~~l~~h~~~   33 (132)
                      ||.|..|.-.|..+.+|..|+..
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            57788888888888888877764

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.24  E-value=0.00012  Score=27.93  Aligned_cols=27  Identities=33%  Similarity=0.636  Sum_probs=16.1

Q ss_pred             CCccCCC--chhccccchHHHHHHHhhhh
Q psy6628         102 KPYACEF--CPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus       102 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~  128 (132)
                      +||.|..  |.+.|...-.|.+|.-.|.|
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHT
T ss_pred             CCcCcccccccccchhhhhhhhhhccccC
Confidence            3555543  66666666666666655554

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00017  Score=29.89  Aligned_cols=27  Identities=26%  Similarity=0.573  Sum_probs=22.7

Q ss_pred             ceeeeCCC--CccccCChhHHHHHHHhhc
Q psy6628           9 RVVFTCQV--CSKIFSYENGLKAHVRNKH   35 (132)
Q Consensus         9 ~~~~~C~~--C~~~f~~~~~l~~h~~~~~   35 (132)
                      ++||.|..  |+..|.+...|..|...|.
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhhe
Confidence            78899955  8899999999999887764

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00011  Score=27.77  Aligned_cols=24  Identities=25%  Similarity=0.427  Sum_probs=20.3

Q ss_pred             CccCCCchhccccchHHHHHHHhh
Q psy6628         103 PYACEFCPLTFRHSSHLFRHRRSL  126 (132)
Q Consensus       103 ~~~C~~C~~~f~~~~~l~~H~~~~  126 (132)
                      |-+|+.|..+.+++..|+.|.++|
T Consensus         2 pekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CccCcccccccCcHHHHHHhhccc
Confidence            567888998888999999888876

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00024  Score=26.68  Aligned_cols=24  Identities=29%  Similarity=0.798  Sum_probs=21.4

Q ss_pred             eeCCCCccccCChhHHHHHHHhhc
Q psy6628          12 FTCQVCSKIFSYENGLKAHVRNKH   35 (132)
Q Consensus        12 ~~C~~C~~~f~~~~~l~~h~~~~~   35 (132)
                      |.||.|+.+...+++|+.|++.-+
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTS
T ss_pred             ccCCcchhheeehhhhhHHhhhcc
Confidence            789999999999999999998643

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=8.2e-05  Score=29.15  Aligned_cols=27  Identities=44%  Similarity=0.899  Sum_probs=20.0

Q ss_pred             CCccCCc--ccccccChhhHHHHH-HHhcC
Q psy6628          74 KPYQCSQ--CSKSFFSKYDHKIHS-RVHTG  100 (132)
Q Consensus        74 ~~~~c~~--C~~~~~~~~~l~~h~-~~h~~  100 (132)
                      +||.|..  |.++|.+.++-.+|+ ++|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            4777777  888888888888886 56643

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00017  Score=31.35  Aligned_cols=26  Identities=27%  Similarity=0.652  Sum_probs=22.9

Q ss_pred             eeeeCCCCccccCChhHHHHHHHhhc
Q psy6628          10 VVFTCQVCSKIFSYENGLKAHVRNKH   35 (132)
Q Consensus        10 ~~~~C~~C~~~f~~~~~l~~h~~~~~   35 (132)
                      -.|.|..|+++|.....|+.|-..|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            36899999999999999999988774

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00026  Score=27.04  Aligned_cols=26  Identities=19%  Similarity=0.439  Sum_probs=17.6

Q ss_pred             CCccCCcccccccChhhHHHHHHHhc
Q psy6628          74 KPYQCSQCSKSFFSKYDHKIHSRVHT   99 (132)
Q Consensus        74 ~~~~c~~C~~~~~~~~~l~~h~~~h~   99 (132)
                      +||.|..|.......++|..|++.-+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H   26 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFH   26 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHHc
Confidence            46777777777777777777765433

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.01  E-value=0.00028  Score=26.41  Aligned_cols=21  Identities=24%  Similarity=0.706  Sum_probs=15.1

Q ss_pred             CccCCCchhccccchHHHHHH
Q psy6628         103 PYACEFCPLTFRHSSHLFRHR  123 (132)
Q Consensus       103 ~~~C~~C~~~f~~~~~l~~H~  123 (132)
                      ||+|..||+.|-.+.+|..|.
T Consensus         1 pf~c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHH
Confidence            567777777777777776665

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00021  Score=31.07  Aligned_cols=25  Identities=20%  Similarity=0.445  Sum_probs=20.8

Q ss_pred             CCccCCCchhccccchHHHHHHHhh
Q psy6628         102 KPYACEFCPLTFRHSSHLFRHRRSL  126 (132)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H~~~~  126 (132)
                      ..|.|..|++.|.....|++|...|
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             ceeeccccccccCCHHHHhHhHHhc
Confidence            4588999999999999999987654

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00018  Score=28.81  Aligned_cols=26  Identities=23%  Similarity=0.512  Sum_probs=17.7

Q ss_pred             CccCCCchhccccchHHHHHHHhhhh
Q psy6628         103 PYACEFCPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus       103 ~~~C~~C~~~f~~~~~l~~H~~~~~~  128 (132)
                      .|.|..|++.|..+..+.+|.....|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            46777777777777777777665544

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.94  E-value=0.0003  Score=26.33  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=13.3

Q ss_pred             eeeCCCCccccCChhHHHHHHH
Q psy6628          11 VFTCQVCSKIFSYENGLKAHVR   32 (132)
Q Consensus        11 ~~~C~~C~~~f~~~~~l~~h~~   32 (132)
                      ||+|..||+.+-.+.+|.+|-.
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            3566666666666666666543

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00022  Score=26.78  Aligned_cols=24  Identities=29%  Similarity=0.531  Sum_probs=20.4

Q ss_pred             ccCCCchhccccchHHHHHHHhhh
Q psy6628         104 YACEFCPLTFRHSSHLFRHRRSLH  127 (132)
Q Consensus       104 ~~C~~C~~~f~~~~~l~~H~~~~~  127 (132)
                      |+|+.|+-....+++|+.|++..|
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTS
T ss_pred             ccCCcchhheeehhhhhHHhhhcc
Confidence            789999988889999999988654

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.81  E-value=0.00063  Score=25.91  Aligned_cols=22  Identities=36%  Similarity=0.816  Sum_probs=10.3

Q ss_pred             cccCCCCCCcccccChHHHHhhh
Q psy6628          44 FKCEGRGECDRVFTTRNMLNIHI   66 (132)
Q Consensus        44 ~~c~~~~~c~~~~~~~~~l~~h~   66 (132)
                      |.|...+ |.+.|.....|.+|.
T Consensus         3 fpc~~eg-c~kgf~tlhhltrhs   24 (30)
T d1tf3a2           3 FPCKEEG-CEKGFTSLHHLTRHS   24 (30)
T ss_dssp             EECCCSS-CCCEESSTTHHHHHH
T ss_pred             cCccccc-ccccchhhhhhhhhh
Confidence            4443332 555555555555554

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.80  E-value=0.00045  Score=29.92  Aligned_cols=31  Identities=32%  Similarity=0.494  Sum_probs=20.7

Q ss_pred             CCCccCCCchhccccchHHHHHHHhhhhhcc
Q psy6628         101 EKPYACEFCPLTFRHSSHLFRHRRSLHQMYE  131 (132)
Q Consensus       101 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  131 (132)
                      +.|-.|++|+....++.+|++|+..-|=.||
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel~hf~kp   52 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHHHTSCSC
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHhhccC
Confidence            5677777777777777777777765554443

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00096  Score=25.07  Aligned_cols=25  Identities=28%  Similarity=0.349  Sum_probs=20.0

Q ss_pred             eeeCCCCccccCChhHHHHHHHhhc
Q psy6628          11 VFTCQVCSKIFSYENGLKAHVRNKH   35 (132)
Q Consensus        11 ~~~C~~C~~~f~~~~~l~~h~~~~~   35 (132)
                      +-+|++|.....++..|+.|-++|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            3578888888888888888888764

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0013  Score=26.23  Aligned_cols=27  Identities=33%  Similarity=0.690  Sum_probs=22.3

Q ss_pred             eeeeCCCCccccCChhHHHHHHHhhcC
Q psy6628          10 VVFTCQVCSKIFSYENGLKAHVRNKHG   36 (132)
Q Consensus        10 ~~~~C~~C~~~f~~~~~l~~h~~~~~~   36 (132)
                      ..|.|..|+++|..+.-+.+|...-.+
T Consensus         3 ~afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             ceeeecccccchhcchHHHHHhhhcCC
Confidence            358999999999999999999765444

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.18  E-value=0.0011  Score=26.53  Aligned_cols=29  Identities=34%  Similarity=0.783  Sum_probs=20.7

Q ss_pred             CCCCccCCCchhccccchHHHHHHHhhhh
Q psy6628         100 GEKPYACEFCPLTFRHSSHLFRHRRSLHQ  128 (132)
Q Consensus       100 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  128 (132)
                      ++..|.|.+|.+.+...+++.+|.-..|.
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhhcc
Confidence            34567888888888888888888655443

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.14  E-value=0.0034  Score=27.12  Aligned_cols=30  Identities=20%  Similarity=0.476  Sum_probs=23.0

Q ss_pred             cccceeeeCCCCccccCChhHHHHHHHhhc
Q psy6628           6 NIHRVVFTCQVCSKIFSYENGLKAHVRNKH   35 (132)
Q Consensus         6 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   35 (132)
                      ..++.+-+|++|+-+..+..+|++|+...+
T Consensus        19 s~s~qpatcpic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          19 SQSEQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             TTTSCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccccCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            346778888888888888888888876544

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.77  E-value=0.007  Score=22.38  Aligned_cols=24  Identities=33%  Similarity=0.697  Sum_probs=18.4

Q ss_pred             eeCCC--CccccCChhHHHHHHHhhc
Q psy6628          12 FTCQV--CSKIFSYENGLKAHVRNKH   35 (132)
Q Consensus        12 ~~C~~--C~~~f~~~~~l~~h~~~~~   35 (132)
                      |.|..  |++.|.....|..|+-+|.
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            56654  8888888888888887664

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.49  E-value=0.0029  Score=24.94  Aligned_cols=22  Identities=27%  Similarity=0.561  Sum_probs=16.8

Q ss_pred             CccCCCchhccccchHHHHHHH
Q psy6628         103 PYACEFCPLTFRHSSHLFRHRR  124 (132)
Q Consensus       103 ~~~C~~C~~~f~~~~~l~~H~~  124 (132)
                      .|.|+-||..|++.+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            4778888888888888877764

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.36  E-value=0.01  Score=23.65  Aligned_cols=29  Identities=21%  Similarity=0.532  Sum_probs=21.1

Q ss_pred             ccceeeeCCCCccccCChhHHHHHHHhhc
Q psy6628           7 IHRVVFTCQVCSKIFSYENGLKAHVRNKH   35 (132)
Q Consensus         7 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   35 (132)
                      .++.+|.|..|.+++...+++-+|-.+.+
T Consensus         4 Eg~~~yRC~~C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           4 EGEHTYRCKVCSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             EETTEEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             ccCcEEEeehhhHHHHHHHHHHHHHHhhc
Confidence            45667888888888888888877765543

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.0044  Score=24.92  Aligned_cols=16  Identities=44%  Similarity=0.688  Sum_probs=7.8

Q ss_pred             ccChhhHHHHHHHhcC
Q psy6628          85 FFSKYDHKIHSRVHTG  100 (132)
Q Consensus        85 ~~~~~~l~~h~~~h~~  100 (132)
                      |.....|..|++.|+|
T Consensus        17 f~a~YkLv~H~R~HTg   32 (33)
T d2glia2          17 FKAQYMLVVHMRRHTG   32 (33)
T ss_dssp             CSSHHHHHHHTHHHHC
T ss_pred             chhHHHHHHHHhhcCC
Confidence            4444445555554444

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.008  Score=24.12  Aligned_cols=28  Identities=43%  Similarity=0.858  Sum_probs=16.3

Q ss_pred             cccCCCCCCc---ccccChHHHHhhhhhccCCC
Q psy6628          44 FKCEGRGECD---RVFTTRNMLNIHIKRDHQKE   73 (132)
Q Consensus        44 ~~c~~~~~c~---~~~~~~~~l~~h~~~~~~~~   73 (132)
                      |.|.|.+ |.   +.|.....|..|+ +.|+|+
T Consensus         3 y~C~W~~-C~R~~~pf~a~YkLv~H~-R~HTgE   33 (33)
T d2glia2           3 FVCHWGG-CSRELRPFKAQYMLVVHM-RRHTGE   33 (33)
T ss_dssp             CCCCBTT-CTTTTCCCSSHHHHHHHT-HHHHCC
T ss_pred             eEEECCC-CCCCCCcchhHHHHHHHH-hhcCCC
Confidence            5555443 33   3466666777777 566653

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.0075  Score=22.75  Aligned_cols=21  Identities=24%  Similarity=0.360  Sum_probs=16.8

Q ss_pred             CCchhccccchHHHHHHHhhh
Q psy6628         107 EFCPLTFRHSSHLFRHRRSLH  127 (132)
Q Consensus       107 ~~C~~~f~~~~~l~~H~~~~~  127 (132)
                      +-|++.|+++..|..|.+..|
T Consensus         6 ~gc~kifsnrqylnhh~kyqh   26 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKYQH   26 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHHGG
T ss_pred             CCchhhhccHHHHHhHHHHHH
Confidence            458899999999988887654

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=94.83  E-value=0.0064  Score=25.08  Aligned_cols=25  Identities=28%  Similarity=0.466  Sum_probs=16.1

Q ss_pred             CCccCCcccccccChhhHHHHHHHhcCCCCccCCCchh
Q psy6628          74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPL  111 (132)
Q Consensus        74 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~  111 (132)
                      +.|.|.+||...             .++.|-+|++|+.
T Consensus         4 ~~~vC~vCGyi~-------------~g~~Pe~CPvCg~   28 (36)
T d1yuza2           4 KFHLCPICGYIH-------------KGEDFEKCPICFR   28 (36)
T ss_dssp             CEEECSSSCCEE-------------ESSCCSBCTTTCC
T ss_pred             CEEECCCCCCEe-------------eCCCCCcCCCCCC
Confidence            456777777663             3355667887764

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.0021  Score=30.57  Aligned_cols=24  Identities=33%  Similarity=0.390  Sum_probs=18.1

Q ss_pred             CCccCCCchhccccchHHHHHHHh
Q psy6628         102 KPYACEFCPLTFRHSSHLFRHRRS  125 (132)
Q Consensus       102 ~~~~C~~C~~~f~~~~~l~~H~~~  125 (132)
                      ..|.|..|.+.|.+...|..|+++
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CEEecccccCccCCHHHHHHHHcc
Confidence            347788888888888888888653

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.0074  Score=22.63  Aligned_cols=18  Identities=28%  Similarity=0.549  Sum_probs=14.2

Q ss_pred             chhccccchHHHHHHHhh
Q psy6628         109 CPLTFRHSSHLFRHRRSL  126 (132)
Q Consensus       109 C~~~f~~~~~l~~H~~~~  126 (132)
                      |.+.|...+.+++|+..|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            778888888888887664

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.74  E-value=0.019  Score=22.07  Aligned_cols=13  Identities=8%  Similarity=0.281  Sum_probs=4.7

Q ss_pred             ccccChhhHHHHH
Q psy6628          83 KSFFSKYDHKIHS   95 (132)
Q Consensus        83 ~~~~~~~~l~~h~   95 (132)
                      ..|.....|..|.
T Consensus        13 A~ynk~wkL~AHL   25 (31)
T d1tf3a1          13 AAYNKNWKLQAHL   25 (31)
T ss_dssp             CEESSHHHHHHHH
T ss_pred             hhhccchhhhHHh
Confidence            3333333333333

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.64  E-value=0.0064  Score=25.25  Aligned_cols=25  Identities=32%  Similarity=0.695  Sum_probs=16.5

Q ss_pred             CCccCCcccccccChhhHHHHHHHhcCCCCccCCCchh
Q psy6628          74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPL  111 (132)
Q Consensus        74 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~  111 (132)
                      +.|.|..||..+             .++.|-.|++|+.
T Consensus         4 ~~~~C~vCG~i~-------------~g~~P~~CPvCg~   28 (37)
T d1nnqa2           4 KVYICPICGYTA-------------VDEAPEYCPVCGA   28 (37)
T ss_dssp             CEEECTTTCCEE-------------ESCCCSBCTTTCC
T ss_pred             cEEECCCCCCEe-------------cCCCCCcCCCCCC
Confidence            346777787764             3356677888874

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.034  Score=20.97  Aligned_cols=20  Identities=30%  Similarity=0.599  Sum_probs=9.7

Q ss_pred             ccCCcccccccChhhHHHHH
Q psy6628          76 YQCSQCSKSFFSKYDHKIHS   95 (132)
Q Consensus        76 ~~c~~C~~~~~~~~~l~~h~   95 (132)
                      |.|..||+.+.+...++.|.
T Consensus         3 ftc~hcgkqlks~~gmkyhv   22 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHV   22 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHH
T ss_pred             eechhHHHHHhhccCceEEE
Confidence            34444555555544444444

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.035  Score=25.67  Aligned_cols=24  Identities=29%  Similarity=0.666  Sum_probs=11.5

Q ss_pred             ccCCcccccccChhhHHHHHHHhc
Q psy6628          76 YQCSQCSKSFFSKYDHKIHSRVHT   99 (132)
Q Consensus        76 ~~c~~C~~~~~~~~~l~~h~~~h~   99 (132)
                      |+|..|...|.....|..|...|.
T Consensus        19 yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          19 YQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHH
T ss_pred             eeechhHHHHhhHHHHHHHHHhcc
Confidence            444444444444444444444443

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.15  E-value=0.014  Score=27.66  Aligned_cols=25  Identities=28%  Similarity=0.598  Sum_probs=20.0

Q ss_pred             ceeeeCCCCccccCChhHHHHHHHh
Q psy6628           9 RVVFTCQVCSKIFSYENGLKAHVRN   33 (132)
Q Consensus         9 ~~~~~C~~C~~~f~~~~~l~~h~~~   33 (132)
                      .-.|.|..|++.|.+...|..|.++
T Consensus        13 ~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          13 GGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCEEecccccCccCCHHHHHHHHcc
Confidence            3458899999999999988888764

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.70  E-value=0.054  Score=20.36  Aligned_cols=27  Identities=22%  Similarity=0.662  Sum_probs=18.2

Q ss_pred             CccCC--CchhccccchHHHHHHHhhhhh
Q psy6628         103 PYACE--FCPLTFRHSSHLFRHRRSLHQM  129 (132)
Q Consensus       103 ~~~C~--~C~~~f~~~~~l~~H~~~~~~~  129 (132)
                      .|.|.  .|.-.|..+.++..|....|..
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnrfhn~   30 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNRFHNI   30 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHHHTTT
T ss_pred             CccccCCCcceEEeehHHHHHHHhhhccC
Confidence            34553  4777888888888887665543

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.48  E-value=0.074  Score=24.55  Aligned_cols=26  Identities=15%  Similarity=0.469  Sum_probs=22.3

Q ss_pred             eeeeCCCCccccCChhHHHHHHHhhc
Q psy6628          10 VVFTCQVCSKIFSYENGLKAHVRNKH   35 (132)
Q Consensus        10 ~~~~C~~C~~~f~~~~~l~~h~~~~~   35 (132)
                      ..|.|..|+..|....+|..|+..|.
T Consensus        17 ~~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          17 STYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             ceeeechhHHHHhhHHHHHHHHHhcc
Confidence            45999999999999999999988775

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.49  E-value=0.13  Score=23.71  Aligned_cols=16  Identities=44%  Similarity=0.951  Sum_probs=9.2

Q ss_pred             cceeeeCCCCccccCC
Q psy6628           8 HRVVFTCQVCSKIFSY   23 (132)
Q Consensus         8 ~~~~~~C~~C~~~f~~   23 (132)
                      +...|.||.|++.|..
T Consensus        11 ~~~~y~Cp~C~~~ys~   26 (62)
T d1vd4a_          11 NRASFKCPVCSSTFTD   26 (62)
T ss_dssp             SSSEEECSSSCCEEEH
T ss_pred             cCCceECCCCCCCcch
Confidence            3445666666666644

>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF0610-like
domain: Hypothetical protein PF0610
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.90  E-value=0.073  Score=27.34  Aligned_cols=32  Identities=28%  Similarity=0.563  Sum_probs=23.3

Q ss_pred             CCccCCcccccccChhhHHHHHHHhcCCCCccCCCchhccccc
Q psy6628          74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHS  116 (132)
Q Consensus        74 ~~~~c~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~  116 (132)
                      .|-.|..||.+|..           .-.+|-.|+.|...+...
T Consensus        66 ~Pp~CrkCGfvFr~-----------~~kkPSRCP~CKSE~Ie~   97 (105)
T d2gmga1          66 KPAQCRKCGFVFKA-----------EINIPSRCPKCKSEWIEE   97 (105)
T ss_dssp             CCCBBTTTCCBCCC-----------CSSCCSSCSSSCCCCBCC
T ss_pred             eChhhhhcCCeecc-----------cCCCCCCCCCCCCccccC
Confidence            46689999998832           125889999998766543

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.70  E-value=0.075  Score=22.93  Aligned_cols=21  Identities=14%  Similarity=0.373  Sum_probs=18.4

Q ss_pred             ccCCCchhccccchHHHHHHH
Q psy6628         104 YACEFCPLTFRHSSHLFRHRR  124 (132)
Q Consensus       104 ~~C~~C~~~f~~~~~l~~H~~  124 (132)
                      -.|..|+..|+.+.+++.|+-
T Consensus         7 ~eC~lC~vKYs~~~SvrdHiF   27 (48)
T d2yrka1           7 PECTLCGVKYSARLSIRDHIF   27 (48)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHT
T ss_pred             ccCcccceeeeeecchHhhhh
Confidence            689999999999999998874

>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.83  E-value=0.24  Score=17.85  Aligned_cols=20  Identities=25%  Similarity=0.602  Sum_probs=13.6

Q ss_pred             cCCCchhccccchHHHHHHH
Q psy6628         105 ACEFCPLTFRHSSHLFRHRR  124 (132)
Q Consensus       105 ~C~~C~~~f~~~~~l~~H~~  124 (132)
                      .|++|+-.|.+...-+.|..
T Consensus         2 vcpycslrf~sp~lk~ehe~   21 (26)
T d1wjpa2           2 VCPYCSLRFFSPELKQEHES   21 (26)
T ss_dssp             CCTTTCCCBSSHHHHHHHHH
T ss_pred             CCCcceeeeCCHHHhhHhhh
Confidence            47888888877665555543

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.57  E-value=0.12  Score=20.71  Aligned_cols=21  Identities=19%  Similarity=0.569  Sum_probs=16.7

Q ss_pred             ccCCCchhccccchHHHHHHH
Q psy6628         104 YACEFCPLTFRHSSHLFRHRR  124 (132)
Q Consensus       104 ~~C~~C~~~f~~~~~l~~H~~  124 (132)
                      -.|..|+-.|++.+.+..|.+
T Consensus         9 rYC~~CDI~Fn~~~T~~aHKk   29 (36)
T d1fu9a_           9 KYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             SEETTTTEECSSHHHHHHHHH
T ss_pred             hHHhhCCceehhHHHHHHHHH
Confidence            467888888888888888764

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=87.18  E-value=0.087  Score=21.66  Aligned_cols=13  Identities=0%  Similarity=-0.225  Sum_probs=7.1

Q ss_pred             CCccCCccccccc
Q psy6628          74 KPYQCSQCSKSFF   86 (132)
Q Consensus        74 ~~~~c~~C~~~~~   86 (132)
                      ..-.|+.||..+.
T Consensus        21 ~~g~CD~cg~~L~   33 (37)
T d2ak3a2          21 TMGIDDLTGEPLV   33 (37)
T ss_dssp             STTBCTTTCCBCB
T ss_pred             ccCCccCCCCcCE
Confidence            3456666665443

>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.55  E-value=0.67  Score=17.93  Aligned_cols=19  Identities=32%  Similarity=0.709  Sum_probs=12.2

Q ss_pred             CcccccChHHHHhhhhhcc
Q psy6628          52 CDRVFTTRNMLNIHIKRDH   70 (132)
Q Consensus        52 c~~~~~~~~~l~~h~~~~~   70 (132)
                      |+..|.....|..|++..|
T Consensus         9 C~~eFdtQd~LV~HinndH   27 (32)
T d2glia1           9 CSQEFDSQEQLVHHINSEH   27 (32)
T ss_dssp             CCCBCSCHHHHHHHHHHHT
T ss_pred             cccccCCHHHHHHHccccc
Confidence            6667777766766664444

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=83.24  E-value=0.26  Score=27.53  Aligned_cols=25  Identities=28%  Similarity=0.631  Sum_probs=20.6

Q ss_pred             eeeCCCCccccCChhHHHHHHHhhcC
Q psy6628          11 VFTCQVCSKIFSYENGLKAHVRNKHG   36 (132)
Q Consensus        11 ~~~C~~C~~~f~~~~~l~~h~~~~~~   36 (132)
                      -|+|..||+ +-...+|.+|++.|.-
T Consensus       146 FYKCe~CgK-YvDie~~~~H~k~HG~  170 (218)
T d2czra1         146 FYKCEECGK-YVDIENLEAHLREHGI  170 (218)
T ss_dssp             EEECTTTCC-EEEGGGHHHHHHTTTC
T ss_pred             EeehhhcCc-eecHHHHHHHHHHcCc
Confidence            389999998 5677889999998753

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.04  E-value=0.2  Score=20.68  Aligned_cols=11  Identities=0%  Similarity=0.021  Sum_probs=5.6

Q ss_pred             CccCCcccccc
Q psy6628          75 PYQCSQCSKSF   85 (132)
Q Consensus        75 ~~~c~~C~~~~   85 (132)
                      .-.|+.|+..+
T Consensus        22 ~g~CD~cg~~L   32 (38)
T d1akya2          22 DMKDDVTGEAL   32 (38)
T ss_dssp             TTBCTTTCCBC
T ss_pred             CCccCCCCCEe
Confidence            34555555443

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.97  E-value=0.5  Score=18.68  Aligned_cols=25  Identities=32%  Similarity=0.634  Sum_probs=17.6

Q ss_pred             CCCccCCCchhccccchHHHHHHHh
Q psy6628         101 EKPYACEFCPLTFRHSSHLFRHRRS  125 (132)
Q Consensus       101 ~~~~~C~~C~~~f~~~~~l~~H~~~  125 (132)
                      .+.|.|+.|-+-..+...+.+|+..
T Consensus         5 pkLyiCEfCLKYmks~~~l~RH~~K   29 (33)
T d1m36a_           5 PKLYLCEFCLKYMKSRTILQQHMKK   29 (33)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CeeeeehhhhhhhCCHHHHHHHHHh
Confidence            3567777777777777777777643

>d2ct5a1 g.37.1.6 (A:8-67) Zinc finger BED domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: BED zinc finger
domain: Zinc finger BED domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.77  E-value=0.38  Score=21.73  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=17.6

Q ss_pred             CccCCCchhccc---cchHHHHHHHhhhhh
Q psy6628         103 PYACEFCPLTFR---HSSHLFRHRRSLHQM  129 (132)
Q Consensus       103 ~~~C~~C~~~f~---~~~~l~~H~~~~~~~  129 (132)
                      ...|..|.+.+.   .-++|+.|++..|++
T Consensus        22 ~i~C~lC~k~i~~~GNTtNl~~HL~~rHp~   51 (60)
T d2ct5a1          22 KIYCRICMAQIAYSGNTSNLSYHLEKNHPE   51 (60)
T ss_dssp             CCEETTTTEECCCCSSTHHHHHHHHHSCHH
T ss_pred             chHHHHHHHHhcccCCcchHHHHHHhcCHH
Confidence            355677776554   347788888776653