Psyllid ID: psy6631
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 704 | 2.2.26 [Sep-21-2011] | |||||||
| Q9VGH7 | 1193 | Chloride channel protein | no | N/A | 0.768 | 0.453 | 0.561 | 1e-176 | |
| P35524 | 994 | Chloride channel protein | yes | N/A | 0.534 | 0.378 | 0.498 | 1e-105 | |
| Q64347 | 994 | Chloride channel protein | yes | N/A | 0.534 | 0.378 | 0.498 | 1e-105 | |
| P35523 | 988 | Chloride channel protein | yes | N/A | 0.534 | 0.380 | 0.501 | 1e-105 | |
| Q9MZT1 | 976 | Chloride channel protein | yes | N/A | 0.534 | 0.385 | 0.503 | 1e-104 | |
| Q9WU45 | 902 | Chloride channel protein | no | N/A | 0.529 | 0.413 | 0.529 | 1e-101 | |
| P51788 | 898 | Chloride channel protein | no | N/A | 0.529 | 0.415 | 0.518 | 3e-99 | |
| Q9R0A1 | 908 | Chloride channel protein | no | N/A | 0.529 | 0.410 | 0.515 | 3e-99 | |
| P51789 | 898 | Chloride channel protein | no | N/A | 0.521 | 0.408 | 0.524 | 7e-99 | |
| P35525 | 907 | Chloride channel protein | no | N/A | 0.531 | 0.412 | 0.511 | 7e-99 |
| >sp|Q9VGH7|CLCN2_DROME Chloride channel protein 2 OS=Drosophila melanogaster GN=ClC-a PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 617 bits (1591), Expect = e-176, Method: Compositional matrix adjust.
Identities = 337/600 (56%), Positives = 424/600 (70%), Gaps = 59/600 (9%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVTT YFA+RNYWRGFF AVCGATVFRLLAVWF N +T+RA F TNFT +FPFD
Sbjct: 339 GVLFSIEVTTTYFAVRNYWRGFFAAVCGATVFRLLAVWFQNADTVRALFLTNFTTEFPFD 398
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
PQEL VFALIG+VCG GGA YVW HR+YVLFMR NK+MN FLQKNRFLYPG + LL +S+
Sbjct: 399 PQELFVFALIGLVCGLGGASYVWVHRRYVLFMRSNKRMNKFLQKNRFLYPGFLALLVSSI 458
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFM 282
SFPLG G+++AG+L+TH+Q++ LFSNFTW++ TVE+ V+ HW T T VF +L +
Sbjct: 459 SFPLGTGQFLAGELSTHEQVTQLFSNFTWSRDDLTVEQAAVVTHWMTSYTSVFGNLVIYT 518
Query: 283 LYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGY 342
L+T++ SIIASTIPVPSG FIPVFKIGA FGR++GE + + FP G+ +G ++PI+PGGY
Sbjct: 519 LFTFVVSIIASTIPVPSGMFIPVFKIGAGFGRLVGEFMAVTFPHGVRYGGRLSPIMPGGY 578
Query: 343 ATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSIILI 402
A VGAAAFSG+VTHT+SV+VI+FEMTGQITH++PVMIAVL++NAVAALLQPS+YDSIILI
Sbjct: 579 AVVGAAAFSGSVTHTVSVAVIIFEMTGQITHVVPVMIAVLVANAVAALLQPSIYDSIILI 638
Query: 403 KKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 462
KKLPYLPDLLPSSSG+Y+++VEDFMVRDVKYIW+ ++Y+ LK +LK N++LR PLV+S
Sbjct: 639 KKLPYLPDLLPSSSGMYSIFVEDFMVRDVKYIWHGISYQKLKEVLKLNKTLRSLPLVDSP 698
Query: 463 VAALLQPSL--YDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLK 520
+L S+ Y+ I +I+K ++ E M +V W
Sbjct: 699 DNMILLGSVQRYELIKMIEK---------------HIGREKRM--EVAQKWQ-------- 733
Query: 521 NLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSD 580
KE + + + +M RRPSRFEV PAPD+L A+ +
Sbjct: 734 ---KEAQERALEEEKKKQEVELKM---------RRPSRFEVLPAPDILSLRQ---IANDE 778
Query: 581 NIP---RTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFS-PM-LTPNVTPYTTVTG-A 634
+P R E + G P+KSILKKTNSF+LK ++ PM +P++TPYTT+TG +
Sbjct: 779 MLPPKKRAETMHG-------SLAPRKSILKKTNSFNLKTYAQPMGHSPSITPYTTITGNS 831
Query: 635 ESRIRMAFEAIFHKSATLQDANPDPESGREALLSDHCGQTNTSNVRIVPPSPGPFKKVQL 694
E RIR AFEAIF KS TLQD PDPE+G + + V P +PG KKVQL
Sbjct: 832 EFRIRSAFEAIFKKSTTLQDVQPDPETGSLS----PAASNHEVEVPRTPSTPGVSKKVQL 887
|
Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport. Drosophila melanogaster (taxid: 7227) |
| >sp|P35524|CLCN1_RAT Chloride channel protein 1 OS=Rattus norvegicus GN=Clcn1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/377 (49%), Positives = 263/377 (69%), Gaps = 1/377 (0%)
Query: 98 GALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTM 157
G GVLFSIEVT+ YFA+RNYWRGFF A A VFR+LAVW + T+ A F TNF M
Sbjct: 280 GTPLGGVLFSIEVTSTYFAVRNYWRGFFAATFSAFVFRVLAVWNKDAVTITALFRTNFRM 339
Query: 158 DFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVL 217
DFPFD +EL FA+IG+ CGF GA +V+ HRQ +L +R++K ++ FL K+R LYPGIV
Sbjct: 340 DFPFDLKELPAFAVIGICCGFLGAVFVYLHRQVMLGVRKHKALSQFLAKHRLLYPGIVTF 399
Query: 218 LATSVSFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVS 277
+ S++FP G+G++MAG+L + +S+LF N TW K + W +V +
Sbjct: 400 VIASLTFPPGMGQFMAGELMPREAISTLFDNNTWVKHIGDPKSLGQSAVWIHPQVNVVII 459
Query: 278 LACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPI 337
+ F + + SI+A+T+P+P G F+PVF +GAAFGR++GEI+ + FP+GI I I
Sbjct: 460 ILLFFVMKFWMSIVATTMPIPCGGFMPVFVLGAAFGRLVGEIMAMLFPEGILFDDIIYKI 519
Query: 338 IPGGYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYD 397
+PGGYA +GAAA +GAV+HT+S +VI FE+TGQI HI+P+M+AV+++N VA LQPSLYD
Sbjct: 520 LPGGYAVIGAAALTGAVSHTVSTAVICFELTGQIAHILPMMVAVILANMVAQSLQPSLYD 579
Query: 398 SIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFP 457
SII +KKLPYLPDL + + ++VED MVRDVK++ + TY +L+NLL + +++ P
Sbjct: 580 SIIQVKKLPYLPDLGWNQLSKFTIFVEDIMVRDVKFVSASCTYGELRNLL-QTTTVKTLP 638
Query: 458 LVESSVAALLQPSLYDS 474
LV+S + +L S+ S
Sbjct: 639 LVDSKDSMILLGSVERS 655
|
Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport. Rattus norvegicus (taxid: 10116) |
| >sp|Q64347|CLCN1_MOUSE Chloride channel protein 1 OS=Mus musculus GN=Clcn1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/377 (49%), Positives = 263/377 (69%), Gaps = 1/377 (0%)
Query: 98 GALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTM 157
G GVLFSIEVT+ YFA+RNYWRGFF A A VFR+LAVW + T+ A F TNF M
Sbjct: 280 GTPLGGVLFSIEVTSTYFAVRNYWRGFFAATFSAFVFRVLAVWNKDAVTITALFRTNFRM 339
Query: 158 DFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVL 217
DFPFD +EL FA+IG+ CGF GA +V+ HRQ +L +R++K ++ FL K+R LYPGIV
Sbjct: 340 DFPFDLKELPAFAVIGICCGFLGAVFVYLHRQVMLGVRKHKCLSQFLAKHRLLYPGIVTF 399
Query: 218 LATSVSFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVS 277
+ S++FP G+G++MAG+L + +S+LF N TW K + W +V +
Sbjct: 400 VIASLTFPPGMGQFMAGELMPREAISTLFDNNTWVKHIGDPQSLGQSAVWLHPQVNVIII 459
Query: 278 LACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPI 337
+ F + + SI+A+T+P+P G F+PVF +GAAFGR++GEI+ + FP+GI I I
Sbjct: 460 ILLFFVMKFWMSIVATTMPIPCGGFMPVFVLGAAFGRLVGEIMAMLFPEGILFDDIIYKI 519
Query: 338 IPGGYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYD 397
+PGGYA +GAAA +GAV+HT+S +VI FE+TGQI HI+P+M+AV+++N VA LQPSLYD
Sbjct: 520 LPGGYAVIGAAALTGAVSHTVSTAVICFELTGQIAHILPMMVAVILANMVAQSLQPSLYD 579
Query: 398 SIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFP 457
SII +KKLPYLPDL + + ++VED MVRDVK++ + TY +L+NLL+ +++ P
Sbjct: 580 SIIQVKKLPYLPDLGWNQLSKFTIFVEDIMVRDVKFVSASCTYGELRNLLQAT-TVKTLP 638
Query: 458 LVESSVAALLQPSLYDS 474
LV+S + +L S+ S
Sbjct: 639 LVDSKDSMILLGSVERS 655
|
Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport. Mus musculus (taxid: 10090) |
| >sp|P35523|CLCN1_HUMAN Chloride channel protein 1 OS=Homo sapiens GN=CLCN1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/377 (50%), Positives = 259/377 (68%), Gaps = 1/377 (0%)
Query: 98 GALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTM 157
G GVLFSIEVT+ YFA+RNYWRGFF A A VFR+LAVW + T+ A F TNF M
Sbjct: 280 GTPLGGVLFSIEVTSTYFAVRNYWRGFFAATFSAFVFRVLAVWNKDAVTITALFRTNFRM 339
Query: 158 DFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVL 217
DFPFD +EL FA IG+ CG GA +V+ HRQ +L +R++K ++ FL K+R LYPGIV
Sbjct: 340 DFPFDLKELPAFAAIGICCGLLGAVFVYLHRQVMLGVRKHKALSQFLAKHRLLYPGIVTF 399
Query: 218 LATSVSFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVS 277
+ S +FP G+G++MAG+L + +S+LF N TW K E W +V +
Sbjct: 400 VIASFTFPPGMGQFMAGELMPREAISTLFDNNTWVKHAGDPESLGQSAVWIHPRVNVVII 459
Query: 278 LACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPI 337
+ F + + SI+A+T+P+P G F+PVF +GAAFGR++GEI+ + FPDGI I I
Sbjct: 460 IFLFFVMKFWMSIVATTMPIPCGGFMPVFVLGAAFGRLVGEIMAMLFPDGILFDDIIYKI 519
Query: 338 IPGGYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYD 397
+PGGYA +GAAA +GAV+HT+S +VI FE+TGQI HI+P+M+AV+++N VA LQPSLYD
Sbjct: 520 LPGGYAVIGAAALTGAVSHTVSTAVICFELTGQIAHILPMMVAVILANMVAQSLQPSLYD 579
Query: 398 SIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFP 457
SII +KKLPYLPDL + Y ++VED MVRDVK++ + TY +L+ LL + +++ P
Sbjct: 580 SIIQVKKLPYLPDLGWNQLSKYTIFVEDIMVRDVKFVSASYTYGELRTLL-QTTTVKTLP 638
Query: 458 LVESSVAALLQPSLYDS 474
LV+S + +L S+ S
Sbjct: 639 LVDSKDSMILLGSVERS 655
|
Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport. Homo sapiens (taxid: 9606) |
| >sp|Q9MZT1|CLCN1_CANFA Chloride channel protein 1 OS=Canis familiaris GN=CLCN1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/377 (50%), Positives = 260/377 (68%), Gaps = 1/377 (0%)
Query: 98 GALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTM 157
G GVLFSIEVT+ YFA+RNYWRGFF A A VFR+LAVW + T+ A F TNF M
Sbjct: 280 GTPLGGVLFSIEVTSTYFAVRNYWRGFFAATFSAFVFRVLAVWNKDAVTITALFRTNFRM 339
Query: 158 DFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVL 217
DFPFD QEL FA+IG+ CGF GA +V+ HRQ +L +R++K ++ FL K+R LYPGIV
Sbjct: 340 DFPFDLQELPAFAIIGICCGFLGAVFVYLHRQVMLGVRKHKALSQFLAKHRLLYPGIVTF 399
Query: 218 LATSVSFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVS 277
+ S +FP G+G++MAG+L + +S+LF N TW K E W +V +
Sbjct: 400 IIASFTFPPGIGQFMAGELMPREAISTLFDNNTWVKHVGDPESLGRSAVWIHPRVNVIII 459
Query: 278 LACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPI 337
+ F + + SI+A+T+P+P G F+PVF +GAAFGR++GEI+ + FPDGI I I
Sbjct: 460 IFLFFIMKFWMSIVATTMPIPCGGFMPVFVLGAAFGRLVGEIMAMLFPDGILFDDIIYKI 519
Query: 338 IPGGYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYD 397
+PGGYA +GAAA +GAV+HT+S +VI FE+TGQI HI+P+M+AV+++N VA LQPSLYD
Sbjct: 520 LPGGYAVIGAAALTGAVSHTVSTAVICFELTGQIAHILPMMVAVILANMVAQSLQPSLYD 579
Query: 398 SIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFP 457
SII +KKLPYLPDL + + ++VED MVRDVK++ TY +L+ LL + +++ P
Sbjct: 580 SIIQVKKLPYLPDLGWNQLSKFTIFVEDIMVRDVKFVSATCTYGELRTLL-QTTTVKTLP 638
Query: 458 LVESSVAALLQPSLYDS 474
LV+S + +L S+ S
Sbjct: 639 LVDSKDSMILLGSVERS 655
|
Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport. Canis familiaris (taxid: 9615) |
| >sp|Q9WU45|CLCN2_CAVPO Chloride channel protein 2 OS=Cavia porcellus GN=CLCN2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust.
Identities = 200/378 (52%), Positives = 263/378 (69%), Gaps = 5/378 (1%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVT+ +FA+RNYWRGFF+A A +FR+LAVW +EET+ A F T F +DFPFD
Sbjct: 260 GVLFSIEVTSTFFAVRNYWRGFFSATFSAFIFRVLAVWNRDEETITALFKTRFRLDFPFD 319
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
QEL FA+IG+ GFGGA +V+ +R+ V MR+ K +N FL + R L+P +V LL +++
Sbjct: 320 LQELPAFAVIGIASGFGGALFVYLNRKIVQVMRKQKTINRFLMRKRLLFPALVTLLISTL 379
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQE---VLKHWTTRNTDVFVSLA 279
+FP G G++MAG L+ + L +LF N TW VEEQE + W +VF++L
Sbjct: 380 TFPPGFGQFMAGQLSQKETLVTLFDNRTWVHQGL-VEEQEPPSTSQAWNPPRANVFLTLV 438
Query: 280 CFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIP 339
F+L + S +A+TIPVP G+F+PVF IGAAFGR++GE + FPDGI I+P
Sbjct: 439 IFILMKFWMSALATTIPVPCGAFMPVFVIGAAFGRLVGESMAAWFPDGIHTDGSTYRIVP 498
Query: 340 GGYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSI 399
GGYA VGAAA +GAVTHT+S +VI+FE+TGQI HI+PVMIAV+++NAVA LQPSLYDSI
Sbjct: 499 GGYAVVGAAALAGAVTHTVSTAVIVFELTGQIAHILPVMIAVILANAVAQSLQPSLYDSI 558
Query: 400 ILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLV 459
I IKKLPYLP+L Y V VED MVRDV Y+ N T+RDL+ L + R+ LV
Sbjct: 559 IRIKKLPYLPELGWGRHQQYRVRVEDIMVRDVPYVALNCTFRDLRLALHRTKG-RMLALV 617
Query: 460 ESSVAALLQPSLYDSIIL 477
ESS + +L S+ S ++
Sbjct: 618 ESSESMILLGSIERSQVV 635
|
Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport. Cavia porcellus (taxid: 10141) |
| >sp|P51788|CLCN2_HUMAN Chloride channel protein 2 OS=Homo sapiens GN=CLCN2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 363 bits (932), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 196/378 (51%), Positives = 261/378 (69%), Gaps = 5/378 (1%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVT+ +FA+RNYWRGFF A A +FR+LAVW +EET+ A F T F +DFPFD
Sbjct: 258 GVLFSIEVTSTFFAVRNYWRGFFAATFSAFIFRVLAVWNRDEETITALFKTRFRLDFPFD 317
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
QEL FA+IG+ GFGGA +V+ +R+ V MR+ K +N FL + R L+P +V LL +++
Sbjct: 318 LQELPAFAVIGIASGFGGALFVYLNRKIVQVMRKQKTINRFLMRKRLLFPALVTLLISTL 377
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQE---VLKHWTTRNTDVFVSLA 279
+FP G G++MAG L+ + L +LF N TW + VEE E + W +VF++L
Sbjct: 378 TFPPGFGQFMAGQLSQKETLVTLFDNRTWVRQGL-VEELEPPSTSQAWNPPRANVFLTLV 436
Query: 280 CFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIP 339
F+L + S +A+TIPVP G+F+PVF IGAAFGR++GE + FPDGI I+P
Sbjct: 437 IFILMKFWMSALATTIPVPCGAFMPVFVIGAAFGRLVGESMAAWFPDGIHTDSSTYRIVP 496
Query: 340 GGYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSI 399
GGYA VGAAA +GAVTHT+S +VI+FE+TGQI HI+PVMIAV+++NAVA LQPSLYDSI
Sbjct: 497 GGYAVVGAAALAGAVTHTVSTAVIVFELTGQIAHILPVMIAVILANAVAQSLQPSLYDSI 556
Query: 400 ILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLV 459
I IKKLPYLP+L Y V VED MVRDV ++ + T+RDL+ L + R+ LV
Sbjct: 557 IRIKKLPYLPELGWGRHQQYRVRVEDIMVRDVPHVALSCTFRDLRLALHRTKG-RMLALV 615
Query: 460 ESSVAALLQPSLYDSIIL 477
ES + +L S+ S ++
Sbjct: 616 ESPESMILLGSIERSQVV 633
|
Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport. Homo sapiens (taxid: 9606) |
| >sp|Q9R0A1|CLCN2_MOUSE Chloride channel protein 2 OS=Mus musculus GN=Clcn2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 363 bits (931), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 195/378 (51%), Positives = 263/378 (69%), Gaps = 5/378 (1%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVT+ +FA+RNYWRGFF A A +FR+LAVW +EET+ A F T F +DFPFD
Sbjct: 266 GVLFSIEVTSTFFAVRNYWRGFFAATFSAFIFRVLAVWNRDEETITALFKTRFRLDFPFD 325
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
QEL FA+IG+ GFGGA +V+ +R+ V MR+ K +N FL + R L+P +V LL +++
Sbjct: 326 LQELPAFAVIGIASGFGGALFVYLNRKIVQVMRKQKTINRFLMRKRLLFPALVTLLISTL 385
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEV---LKHWTTRNTDVFVSLA 279
+FP G G++MAG L+ + L +LF N TW + VE+ E+ + W+ +VF++L
Sbjct: 386 TFPPGFGQFMAGQLSQKETLVTLFDNRTWVRQGL-VEDLELPSTSQAWSPPRANVFLTLV 444
Query: 280 CFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIP 339
F+L + S +A+TIPVP G+F+PVF IGAAFGR++GE + FPDGI I+P
Sbjct: 445 IFILMKFWMSALATTIPVPCGAFMPVFVIGAAFGRLVGESMAAWFPDGIHTDSSTYRIVP 504
Query: 340 GGYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSI 399
GGYA VGAAA +GAVTHT+S +VI+FE+TGQI HI+PVMIAV+++NAVA LQPSLYDSI
Sbjct: 505 GGYAVVGAAALAGAVTHTVSTAVIVFELTGQIAHILPVMIAVILANAVAQSLQPSLYDSI 564
Query: 400 ILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLV 459
I IKKLPYLP+L Y V VED MVRDV ++ + T+RDL+ L + R+ LV
Sbjct: 565 IRIKKLPYLPELGWGRHQQYRVRVEDIMVRDVPHVALSCTFRDLRLALHRTKG-RMLALV 623
Query: 460 ESSVAALLQPSLYDSIIL 477
ES + +L S+ S ++
Sbjct: 624 ESPESMILLGSIERSQVV 641
|
Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport. Mus musculus (taxid: 10090) |
| >sp|P51789|CLCN2_RABIT Chloride channel protein 2 OS=Oryctolagus cuniculus GN=CLCN2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 362 bits (928), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 195/372 (52%), Positives = 258/372 (69%), Gaps = 5/372 (1%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVT+ +FA+RNYWRGFF A A +FR+LAVW +EET+ A F T F +DFPFD
Sbjct: 261 GVLFSIEVTSTFFAVRNYWRGFFAATFSAFIFRVLAVWNRDEETITALFKTRFRLDFPFD 320
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
QEL FA+IG+ GFGGA +V+ +R+ V MR+ K +N FL + R L+P +V LL +++
Sbjct: 321 LQELPAFAVIGIASGFGGALFVYLNRKIVQVMRKQKTINRFLMRKRLLFPALVTLLISTL 380
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQE---VLKHWTTRNTDVFVSLA 279
+FP G G++MAG L+ + L +LF N TW + VEE E + W+ +VF++L
Sbjct: 381 TFPPGFGQFMAGQLSQKETLVTLFDNRTWVRQGL-VEELEPPSTSQAWSPPRANVFLTLV 439
Query: 280 CFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIP 339
F+L + S +A+TIPVP G+F+PVF IGAAFGR++GE + FPDGI I+P
Sbjct: 440 IFILMKFWMSALATTIPVPCGAFMPVFVIGAAFGRLVGESMAAWFPDGIHTDSSTYRIVP 499
Query: 340 GGYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSI 399
GGYA VGAAA +GAVTHT+S +VI+FE+TGQI HI+PVMIAV+++NAVA LQPSLYDSI
Sbjct: 500 GGYAVVGAAALAGAVTHTVSTAVIVFELTGQIAHILPVMIAVILANAVAQSLQPSLYDSI 559
Query: 400 ILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLV 459
I IKKLPYLP+L Y V VED MVRDV ++ + T+RDL+ L + R LV
Sbjct: 560 IRIKKLPYLPELGWGRHQQYRVRVEDIMVRDVPHVALSCTFRDLRLALHRTKG-RTLALV 618
Query: 460 ESSVAALLQPSL 471
ES + +L S+
Sbjct: 619 ESPESMILLGSI 630
|
Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport. May be involved in gastric HCl secretion. Oryctolagus cuniculus (taxid: 9986) |
| >sp|P35525|CLCN2_RAT Chloride channel protein 2 OS=Rattus norvegicus GN=Clcn2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 362 bits (928), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 193/377 (51%), Positives = 259/377 (68%), Gaps = 3/377 (0%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVT+ +FA+RNYWRGFF A A +FR+LAVW +EET+ A F T F +DFPFD
Sbjct: 264 GVLFSIEVTSTFFAVRNYWRGFFAATFSAFIFRVLAVWNRDEETITALFKTRFRLDFPFD 323
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
QEL FA+IG+ GFGGA +V+ +R+ V MR+ K +N FL K R L+P +V LL +++
Sbjct: 324 LQELPAFAVIGIASGFGGALFVYLNRKIVQVMRKQKTINRFLMKKRLLFPALVTLLISTL 383
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVE--EQEVLKHWTTRNTDVFVSLAC 280
+FP G G++MAG L+ + L +LF N TW + + + W+ +VF++L
Sbjct: 384 TFPPGFGQFMAGQLSQKETLVTLFDNRTWVRQGLVEDLGAPSTSQAWSPPRANVFLTLVI 443
Query: 281 FMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPG 340
F+L + S +A+TIPVP G+F+PVF IGAAFGR++GE + FPDGI I+PG
Sbjct: 444 FILMKFWMSALATTIPVPCGAFMPVFVIGAAFGRLVGESMAAWFPDGIHTDSSTYRIVPG 503
Query: 341 GYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSII 400
GYA VGAAA +GAVTHT+S +VI+FE+TGQI HI+PVMIAV+++NAVA LQPSLYDSII
Sbjct: 504 GYAVVGAAALAGAVTHTVSTAVIVFELTGQIAHILPVMIAVILANAVAQSLQPSLYDSII 563
Query: 401 LIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE 460
IKKLPYLP+L Y V VED MVRDV ++ + T+RDL+ L + R+ LVE
Sbjct: 564 RIKKLPYLPELGWGRHQQYRVRVEDIMVRDVPHVALSCTFRDLRLALHRTKG-RMLALVE 622
Query: 461 SSVAALLQPSLYDSIIL 477
S + +L S+ S ++
Sbjct: 623 SPESMILLGSIERSQVV 639
|
Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport. Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 704 | ||||||
| 383854577 | 1004 | PREDICTED: chloride channel protein 2-li | 0.785 | 0.550 | 0.624 | 0.0 | |
| 340724384 | 1004 | PREDICTED: chloride channel protein 2-li | 0.785 | 0.550 | 0.622 | 0.0 | |
| 345495188 | 1037 | PREDICTED: chloride channel protein 2-li | 0.791 | 0.537 | 0.614 | 0.0 | |
| 350397649 | 1004 | PREDICTED: chloride channel protein 2-li | 0.785 | 0.550 | 0.622 | 0.0 | |
| 380022339 | 998 | PREDICTED: chloride channel protein 2-li | 0.785 | 0.554 | 0.622 | 0.0 | |
| 328785091 | 998 | PREDICTED: chloride channel protein 2-li | 0.784 | 0.553 | 0.618 | 0.0 | |
| 332017823 | 1004 | Chloride channel protein 2 [Acromyrmex e | 0.776 | 0.544 | 0.617 | 0.0 | |
| 307170777 | 1008 | Chloride channel protein 2 [Camponotus f | 0.786 | 0.549 | 0.622 | 0.0 | |
| 322800715 | 929 | hypothetical protein SINV_00748 [Solenop | 0.782 | 0.593 | 0.615 | 0.0 | |
| 242009651 | 919 | Chloride channel protein ClC-Ka, putativ | 0.776 | 0.595 | 0.603 | 0.0 |
| >gi|383854577|ref|XP_003702797.1| PREDICTED: chloride channel protein 2-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/596 (62%), Positives = 436/596 (73%), Gaps = 43/596 (7%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVTTVYFA+RNYWRGFF AVCGAT+FRLLA+WF EET+ A F TNFTMDFPFD
Sbjct: 315 GVLFSIEVTTVYFAVRNYWRGFFAAVCGATMFRLLAIWFQREETITAMFATNFTMDFPFD 374
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
PQEL VFALIGV G GA YVW HRQYV+FMR+NK MN+FLQKNRFLYPGIV LL +S+
Sbjct: 375 PQELFVFALIGVGSGLCGAFYVWLHRQYVIFMRKNKSMNSFLQKNRFLYPGIVSLLVSSI 434
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFM 282
SFPLGLG++MAGDLNTHDQ+ LF+NFTWTK VEE ++KHW+T TDVF+ L F
Sbjct: 435 SFPLGLGQFMAGDLNTHDQVYGLFTNFTWTKQELGVEEMNIVKHWSTAYTDVFIGLLGFG 494
Query: 283 LYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGY 342
+T+IFSII+ST+PVPSG FIPVFKIGAA GR +GE + L FP G+ +G I PI+PGGY
Sbjct: 495 TFTFIFSIISSTVPVPSGIFIPVFKIGAALGRAVGEAMALWFPTGVRYGGIITPIVPGGY 554
Query: 343 ATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSIILI 402
ATVGAAAFSGAVTHTISVSVI+FEMTGQITHI+P+MIAVLISNA+AALLQPS+YDSIILI
Sbjct: 555 ATVGAAAFSGAVTHTISVSVIVFEMTGQITHIVPIMIAVLISNAIAALLQPSIYDSIILI 614
Query: 403 KKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 462
KKLPYLPDLLPSSSG+YNVYVEDFMVRDVKYIW+ +TY+ LK +LKENR LR FPLV++
Sbjct: 615 KKLPYLPDLLPSSSGMYNVYVEDFMVRDVKYIWHGITYQKLKEILKENRKLRGFPLVDNP 674
Query: 463 VAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNL 522
DS+IL+ + L +L+ +E + R+ R L+
Sbjct: 675 ----------DSMILLGSIQRL-ELIK--------LIEKHIGRE----------RRLQVA 705
Query: 523 LKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNI 582
K ++ E + R +ER RRPSRFEV PAPD+L+ V +D
Sbjct: 706 QKWHKEAEERAREEMERQL------RDQERTRRPSRFEVIPAPDILKMQRQSV---NDLT 756
Query: 583 PRTENLDGPQ----FCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESRI 638
N P PVFG QPKKSILKKTNSF+LK FSP+++P VTPYTTVTGAESRI
Sbjct: 757 MSPSNGTAPDHHTYHSPVFGSQPKKSILKKTNSFTLKGFSPLVSPAVTPYTTVTGAESRI 816
Query: 639 RMAFEAIFHKSATLQDANPDPESGREALLSDHCGQTNTSNVRIVPPSPGPFKKVQL 694
R+AFEAIF KSATLQD +PDPE G A + Q + ++ PSP KKVQL
Sbjct: 817 RLAFEAIFRKSATLQDVDPDPELGSRAGVRRDS-QEVAPHTPMLAPSPATSKKVQL 871
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340724384|ref|XP_003400562.1| PREDICTED: chloride channel protein 2-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/596 (62%), Positives = 437/596 (73%), Gaps = 43/596 (7%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVTTVYFA+RNYWRGFF AVCGAT+FRLLA+WF EET+ A F TNFTMDFPFD
Sbjct: 315 GVLFSIEVTTVYFAVRNYWRGFFAAVCGATMFRLLAIWFQREETITAMFATNFTMDFPFD 374
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
PQEL VFALIGV G GGA YVW HRQYV+FMR+NK MN+FLQKNRFLYPGIV L+ +SV
Sbjct: 375 PQELFVFALIGVGSGLGGAFYVWLHRQYVIFMRKNKSMNSFLQKNRFLYPGIVSLIVSSV 434
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFM 282
SFPLGLG++MAGDLNTHDQ+ LF+NFTWTK VEE ++KHW+T TDVF+ L F+
Sbjct: 435 SFPLGLGQFMAGDLNTHDQVYGLFTNFTWTKQELGVEEMNMVKHWSTIYTDVFIGLISFV 494
Query: 283 LYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGY 342
+T+IFSII+ST+PVPSG FIPVFKIGAA GR +GE + L FP+G+ +G I PI+PGGY
Sbjct: 495 AFTFIFSIISSTVPVPSGIFIPVFKIGAALGRAVGEAMALWFPNGVRYGGIITPIVPGGY 554
Query: 343 ATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSIILI 402
ATVGAAAFSGAVTHTISVSVI+FEMTGQITHI+P+MIAVLISNA+AALLQPS+YDSIILI
Sbjct: 555 ATVGAAAFSGAVTHTISVSVIVFEMTGQITHIVPIMIAVLISNAIAALLQPSIYDSIILI 614
Query: 403 KKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 462
KKLPYLPDLLPSSSG+YNVYVEDFMVRDVK IW+ +TY+ LK +LKENR LR FPLV++
Sbjct: 615 KKLPYLPDLLPSSSGMYNVYVEDFMVRDVKNIWHGITYQKLKEILKENRKLRGFPLVDNP 674
Query: 463 VAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNL 522
DS+IL+ + L +L+ +E + R+ R L+
Sbjct: 675 ----------DSMILLGSIQRL-ELIK--------LIEKHIGRE----------RRLQVA 705
Query: 523 LKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNI 582
K ++ E + R +ER RRPSRFEV PAPD+L+ V +D
Sbjct: 706 QKWHKEAEERAREEMERQL------RDQERTRRPSRFEVIPAPDILKMQRQSV---NDLT 756
Query: 583 PRTENLDGPQ----FCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESRI 638
N P PVFG QPKKSILKKTNSF+LK FSP+++P VTPYTTVTGAESRI
Sbjct: 757 MSPNNAAAPDHHTYHSPVFGSQPKKSILKKTNSFTLKGFSPLVSPAVTPYTTVTGAESRI 816
Query: 639 RMAFEAIFHKSATLQDANPDPESGREALLSDHCGQTNTSNVRIVPPSPGPFKKVQL 694
R+AFEAIF KSATLQD +PDPE G + Q + ++ PSP KKVQL
Sbjct: 817 RLAFEAIFRKSATLQDVDPDPEIGSGGAIRRDS-QDVPPHTPMLAPSPATSKKVQL 871
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345495188|ref|XP_001604692.2| PREDICTED: chloride channel protein 2-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/594 (61%), Positives = 439/594 (73%), Gaps = 37/594 (6%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVTTVYFA+RNYWRGFFTAVCGAT+FRLLA+WF EET+ A F TNFTM+FPFD
Sbjct: 331 GVLFSIEVTTVYFAVRNYWRGFFTAVCGATMFRLLAIWFQREETITAMFITNFTMEFPFD 390
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
PQEL +FALIGV G G+ YVW HRQYV+FMR+NK MN+FLQKNRFLYPGIV LL +SV
Sbjct: 391 PQELFIFALIGVGSGLCGSFYVWLHRQYVIFMRKNKSMNSFLQKNRFLYPGIVSLLVSSV 450
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFM 282
+FPLGLG++MAGDLNTHDQ+ LF+NFTWTK VEEQ V+KHW+T ++DVFV L F
Sbjct: 451 AFPLGLGQFMAGDLNTHDQVHGLFTNFTWTKADLNVEEQNVVKHWSTEHSDVFVGLLSFT 510
Query: 283 LYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGY 342
+T+IFSII+ST+PVPSG FIPVFKIGAA GR +GE + L+FP G+ +G + PI+PGGY
Sbjct: 511 AFTFIFSIISSTVPVPSGIFIPVFKIGAALGRAVGEAMALQFPAGVRYGGVVTPIVPGGY 570
Query: 343 ATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSIILI 402
ATVGAAAFSGAVTHTISVSVI+FEMTGQITHI+P+MIAVLISNA+AALLQPS+YDSIILI
Sbjct: 571 ATVGAAAFSGAVTHTISVSVIIFEMTGQITHIVPMMIAVLISNAIAALLQPSIYDSIILI 630
Query: 403 KKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 462
KKLPYLPDLLPS SG+YN+YVEDFMVRDVKYIW+ +TY+ LK LKENR LR FPLV++
Sbjct: 631 KKLPYLPDLLPSGSGMYNIYVEDFMVRDVKYIWHGITYQRLKETLKENRKLRSFPLVDNP 690
Query: 463 VAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNL 522
D++IL+ + L +L+ +E + R+ + L
Sbjct: 691 ----------DNMILLGSIQRL-ELIK--------LIEKHIGRE-------------RRL 718
Query: 523 LKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNI 582
R + Q+ R +ER RRPSRFEV PAPD+L+ V+ + +
Sbjct: 719 QVAQRWHKEAEERAKEEMERQL---REQERSRRPSRFEVIPAPDILKMQRQSVNDLTMSG 775
Query: 583 PRTENLDGPQF-CPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESRIRMA 641
N D F PVFG QPKKSILKKTNSF+LK FSP+++P VTPYTTVTGAESRIR+A
Sbjct: 776 GNGVNSDHHTFHTPVFGSQPKKSILKKTNSFTLKGFSPLVSPAVTPYTTVTGAESRIRLA 835
Query: 642 FEAIFHKSATLQDANPDPESGREALLSDHCGQTN-TSNVRIVPPSPGPFKKVQL 694
FEAIF KSATLQD +PDPE G + + + ++ ++ PSP KKVQL
Sbjct: 836 FEAIFRKSATLQDVDPDPELGSGTIPNGRRDSVDGGAHQPMLTPSPATSKKVQL 889
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350397649|ref|XP_003484942.1| PREDICTED: chloride channel protein 2-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/596 (62%), Positives = 437/596 (73%), Gaps = 43/596 (7%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVTTVYFA+RNYWRGFF AVCGAT+FRLLA+WF EET+ A F TNFTMDFPFD
Sbjct: 315 GVLFSIEVTTVYFAVRNYWRGFFAAVCGATMFRLLAIWFQREETITAMFATNFTMDFPFD 374
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
PQEL VFALIGV G GGA YVW HRQYV+FMR+NK MN+FLQKNRFLYPGIV L+ +SV
Sbjct: 375 PQELFVFALIGVGSGLGGAFYVWLHRQYVIFMRKNKSMNSFLQKNRFLYPGIVSLIVSSV 434
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFM 282
SFPLGLG++MAGDLNTHDQ+ LF+NFTWTK VEE ++KHW+T TDVF+ L F+
Sbjct: 435 SFPLGLGQFMAGDLNTHDQVYGLFTNFTWTKQELGVEEMNMVKHWSTIYTDVFIGLISFV 494
Query: 283 LYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGY 342
+T+IFSII+ST+PVPSG FIPVFKIGAA GR +GE + L FP+G+ +G I PI+PGGY
Sbjct: 495 AFTFIFSIISSTVPVPSGIFIPVFKIGAALGRAVGEAMALWFPNGVRYGGIITPIVPGGY 554
Query: 343 ATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSIILI 402
ATVGAAAFSGAVTHTISVSVI+FEMTGQITHI+P+MIAVLISNA+AALLQPS+YDSIILI
Sbjct: 555 ATVGAAAFSGAVTHTISVSVIVFEMTGQITHIVPIMIAVLISNAIAALLQPSIYDSIILI 614
Query: 403 KKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 462
KKLPYLPDLLPSSSG+YNVYVEDFMVRDVK IW+ +TY+ LK +LKENR LR FPLV++
Sbjct: 615 KKLPYLPDLLPSSSGMYNVYVEDFMVRDVKNIWHGITYQKLKEILKENRKLRGFPLVDNP 674
Query: 463 VAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNL 522
DS+IL+ + L +L+ +E + R+ R L+
Sbjct: 675 ----------DSMILLGSIQRL-ELIK--------LIEKHIGRE----------RRLQVA 705
Query: 523 LKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNI 582
K ++ E + R +ER RRPSRFEV PAPD+L+ V +D
Sbjct: 706 QKWHKEAEERAREEMERQL------RDQERTRRPSRFEVIPAPDILKMQRQSV---NDLT 756
Query: 583 PRTENLDGPQ----FCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESRI 638
N P PVFG QPKKSILKKTNSF+LK FSP+++P VTPYTTVTGAESRI
Sbjct: 757 MSPNNAAAPDHHTYHSPVFGSQPKKSILKKTNSFTLKGFSPLVSPAVTPYTTVTGAESRI 816
Query: 639 RMAFEAIFHKSATLQDANPDPESGREALLSDHCGQTNTSNVRIVPPSPGPFKKVQL 694
R+AFEAIF KSATLQD +PDPE G + Q + ++ PSP KKVQL
Sbjct: 817 RLAFEAIFRKSATLQDVDPDPEIGSGGAIRRDS-QDVPPHTPMLAPSPATSKKVQL 871
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380022339|ref|XP_003695007.1| PREDICTED: chloride channel protein 2-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/596 (62%), Positives = 438/596 (73%), Gaps = 43/596 (7%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVTTVYFA+RNYWRGFF AVCGAT+FRLLA+WF EET+ A F TNFTMDFPFD
Sbjct: 309 GVLFSIEVTTVYFAVRNYWRGFFAAVCGATMFRLLAIWFQREETITAMFATNFTMDFPFD 368
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
PQEL VFALIGV G GGA YVW HRQYV+FMR+NK MN+FLQKNRFLYPGIV LL +SV
Sbjct: 369 PQELFVFALIGVGSGIGGAFYVWLHRQYVIFMRKNKSMNSFLQKNRFLYPGIVSLLVSSV 428
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFM 282
SFPLGLG++MAGDLNTHDQ+ LF+NFTWTK VEE ++KHW+T TDVF+ L F+
Sbjct: 429 SFPLGLGQFMAGDLNTHDQVYGLFTNFTWTKQELGVEEMNIVKHWSTVYTDVFIGLIGFV 488
Query: 283 LYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGY 342
+T+IFSII+ST+PVPSG FIPVFKIGAA GR +GE + L FP+G+ +G I PI+PGGY
Sbjct: 489 AFTFIFSIISSTVPVPSGIFIPVFKIGAALGRAMGEAMALWFPNGVRYGGIITPIVPGGY 548
Query: 343 ATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSIILI 402
ATVGAAAFSGAVTHTISVSVI+FEMTGQITHI+P+MIAVLISNA+AALLQPS+YDSIILI
Sbjct: 549 ATVGAAAFSGAVTHTISVSVIVFEMTGQITHIVPIMIAVLISNAIAALLQPSIYDSIILI 608
Query: 403 KKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 462
KKLPYLPDLLPSSSG+YNVYVEDFMVRDVKYIW+ ++Y+ LK +LKENR LR FPLV++
Sbjct: 609 KKLPYLPDLLPSSSGMYNVYVEDFMVRDVKYIWHGISYQKLKEILKENRKLRGFPLVDNP 668
Query: 463 VAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNL 522
DS+IL+ + L +L+ +E + R+ R L+
Sbjct: 669 ----------DSMILLGSIQRL-ELIK--------LIEKHIGRE----------RRLQVA 699
Query: 523 LKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNI 582
K ++ E + R +ER RRPSRFEV PAPD+L+ V +D
Sbjct: 700 QKWHKEAEERAREEMERQL------RDQERTRRPSRFEVIPAPDILKMQRQSV---NDLT 750
Query: 583 PRTENLDGPQ----FCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESRI 638
N P P+FG QPKKSILKKTNSF+LK FSP+++P TPYTTVTGAESRI
Sbjct: 751 MSPNNGAAPDHHTYHSPIFGSQPKKSILKKTNSFTLKGFSPLVSPAATPYTTVTGAESRI 810
Query: 639 RMAFEAIFHKSATLQDANPDPESGREALLSDHCGQTNTSNVRIVPPSPGPFKKVQL 694
R+AFEAIF KSATLQD +PDPE G A + Q + ++ PSP KKVQL
Sbjct: 811 RLAFEAIFRKSATLQDVDPDPEIGAGAGVRRDS-QEVPPHTPMLAPSPATSKKVQL 865
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328785091|ref|XP_392015.3| PREDICTED: chloride channel protein 2-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/597 (61%), Positives = 438/597 (73%), Gaps = 45/597 (7%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVTTVYFA+RNYWRGFF AVCGAT+FRLLA+WF EET+ A F TNFTMDFPFD
Sbjct: 309 GVLFSIEVTTVYFAVRNYWRGFFAAVCGATMFRLLAIWFQREETITAMFATNFTMDFPFD 368
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
PQEL VFALIGV G GGA YVW HRQYV+FMR+NK MN+FLQKNRFLYPGIV LL +SV
Sbjct: 369 PQELFVFALIGVGSGIGGAFYVWLHRQYVIFMRKNKSMNSFLQKNRFLYPGIVSLLVSSV 428
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFM 282
SFPLGLG++MAGDLNTHDQ+ LF+NFTWTK VEE ++KHW+T TDVF+ L F+
Sbjct: 429 SFPLGLGQFMAGDLNTHDQVYGLFTNFTWTKQELGVEEMNIVKHWSTVYTDVFIGLIGFV 488
Query: 283 LYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGY 342
+T++FSII+ST+PVPSG FIPVFKIGAA GR +GE + L FP+G+ +G I PI+PGGY
Sbjct: 489 AFTFVFSIISSTVPVPSGIFIPVFKIGAALGRAMGEAMALWFPNGVRYGGIITPIVPGGY 548
Query: 343 ATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSIILI 402
ATVGAAAFSGAVTHTISVSVI+FEMTGQITHI+P+MIAVLISNA+AALLQPS+YDSIILI
Sbjct: 549 ATVGAAAFSGAVTHTISVSVIVFEMTGQITHIVPIMIAVLISNAIAALLQPSIYDSIILI 608
Query: 403 KKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 462
KKLPYLPDLLPSSSG+YNVYVEDFMVRDVKYIW+ ++Y+ LK +LKENR LR FPLV++
Sbjct: 609 KKLPYLPDLLPSSSGMYNVYVEDFMVRDVKYIWHGISYQKLKEILKENRKLRGFPLVDNP 668
Query: 463 VAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNL 522
DS+IL+ + L +L+ +E + R+ R L+
Sbjct: 669 ----------DSMILLGSIQRL-ELIK--------LIEKHIGRE----------RRLQVA 699
Query: 523 LKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLR-----GNPHGVSA 577
K ++ E + R +ER RRPSRFEV PAPD+L+ N +S
Sbjct: 700 QKWHKEAEERAREEMERQL------RDQERTRRPSRFEVIPAPDILKMQRQSANDLTMSP 753
Query: 578 SSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637
S+ P P+FG QPKKSILKKTNSF+LK FSP+++P TPYTTVTGAESR
Sbjct: 754 SNGAAPDHHTYH----SPIFGSQPKKSILKKTNSFTLKGFSPLVSPAATPYTTVTGAESR 809
Query: 638 IRMAFEAIFHKSATLQDANPDPESGREALLSDHCGQTNTSNVRIVPPSPGPFKKVQL 694
IR+AFEAIF KSATLQD +PDPE G + Q + ++ PSP KKVQL
Sbjct: 810 IRLAFEAIFRKSATLQDVDPDPEIGAGGGVRRDS-QEVPPHTPMLAPSPATSKKVQL 865
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332017823|gb|EGI58484.1| Chloride channel protein 2 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/601 (61%), Positives = 439/601 (73%), Gaps = 54/601 (8%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVTTVYFA+RNYWRGFF AVCGAT+FRLLA+WF EET+ A F TNFTM+FPFD
Sbjct: 315 GVLFSIEVTTVYFAVRNYWRGFFAAVCGATMFRLLAIWFQREETITAMFATNFTMEFPFD 374
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
PQEL VFALIGV G GA YVW HRQYV+FMR+NK MN+FLQKNRFLYPGIV L+ +SV
Sbjct: 375 PQELLVFALIGVGSGLLGAFYVWLHRQYVIFMRKNKSMNSFLQKNRFLYPGIVSLIVSSV 434
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFM 282
SFP+GLG++MAGDLNTHDQ+ LF+NFTWTK + +VEE ++KHW+T TDVF L F+
Sbjct: 435 SFPVGLGQFMAGDLNTHDQVFGLFTNFTWTKENLSVEEMNIVKHWSTSYTDVFSGLLSFV 494
Query: 283 LYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGY 342
L+T+IFSII+ST+PVPSG FIPVFKIGAA GR +GE + L FP G+ +G I PI+PGGY
Sbjct: 495 LFTFIFSIISSTVPVPSGIFIPVFKIGAALGRTVGEAMALWFPTGVRYGGVITPIVPGGY 554
Query: 343 ATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSIILI 402
ATVGAAAFSGAVTHTISVSVI+FEMTGQITHI+P+MIAVLISNA+AALLQPS+YDSIILI
Sbjct: 555 ATVGAAAFSGAVTHTISVSVIIFEMTGQITHIVPIMIAVLISNAIAALLQPSIYDSIILI 614
Query: 403 KKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 462
KKLPYLPDLLPSSSG+YNVYVEDFMVRDVKYIW+ ++Y+ LK++LKENR LR FPLV++
Sbjct: 615 KKLPYLPDLLPSSSGMYNVYVEDFMVRDVKYIWHGISYQKLKDILKENRKLRGFPLVDNP 674
Query: 463 VAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNL 522
DS+IL+ + L + +E + R+ R L+
Sbjct: 675 ----------DSMILLGSIQRLALV---------KLIEKHIGRE----------RRLQVA 705
Query: 523 LKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNI 582
K ++ E + R +ER RRPSRFEV PAPD+L+ V +D
Sbjct: 706 QKWHKEAEERAREEIERQL------REQERTRRPSRFEVIPAPDILKMQRQSV---NDLT 756
Query: 583 PRTENLDGPQ----FCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAES-R 637
N GP PVFG QPKKSILKKTNSF+LK FSP+ +P VTPYTTVTGAES R
Sbjct: 757 MSANNGSGPDHHTFHSPVFGSQPKKSILKKTNSFTLKGFSPLASPAVTPYTTVTGAESRR 816
Query: 638 IRMAFEAIFHKSATLQDANPDPESGREALLSDHCGQTNTSNVR----IVPPSPGPFKKVQ 693
IR+AFEAIF KSATLQD +PDPE G G + NV+ ++ PSP KKVQ
Sbjct: 817 IRLAFEAIFRKSATLQDVDPDPELGTR-------GSQDVMNVQSHTPMLAPSPATSKKVQ 869
Query: 694 L 694
L
Sbjct: 870 L 870
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307170777|gb|EFN62902.1| Chloride channel protein 2 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/598 (62%), Positives = 437/598 (73%), Gaps = 44/598 (7%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVTTVYFA+RNYWRGFF AVCGAT+FRLLA+WF EET+ A F TNFTMDFPFD
Sbjct: 315 GVLFSIEVTTVYFAVRNYWRGFFAAVCGATMFRLLAIWFQREETITAMFATNFTMDFPFD 374
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
PQEL VFALIGV G GA YVW HRQYV+FMR+NK MN+FLQKNRFLYPGIV LL +SV
Sbjct: 375 PQELFVFALIGVGSGLLGAFYVWLHRQYVIFMRKNKSMNSFLQKNRFLYPGIVSLLVSSV 434
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFM 282
SFPLGLG++MAGD NTHDQ+ LF+NFTWT+ + VEE V+KHW T TDVF L F+
Sbjct: 435 SFPLGLGQFMAGDQNTHDQVYGLFTNFTWTQENLGVEEMNVVKHWATPYTDVFSGLLSFV 494
Query: 283 LYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGY 342
L T+IFSII+ST+PVPSG FIPVFKIGAA GR +GE + L FP G+ +G I PIIPGGY
Sbjct: 495 LVTFIFSIISSTVPVPSGIFIPVFKIGAALGRAVGEAMALWFPTGVRYGGIITPIIPGGY 554
Query: 343 ATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSIILI 402
ATVGAAAFSGAVTHTISVSVI+FEMTGQITHI+P+MIAVLISNA+AALLQPS+YDSIILI
Sbjct: 555 ATVGAAAFSGAVTHTISVSVIIFEMTGQITHIVPIMIAVLISNAIAALLQPSIYDSIILI 614
Query: 403 KKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 462
KKLPYLPDLLPSSSG+YN+YVEDFMVRDVKYIW+ ++Y++LKN+LKENR LR FPLV++
Sbjct: 615 KKLPYLPDLLPSSSGMYNIYVEDFMVRDVKYIWHGISYQELKNILKENRKLRGFPLVDNP 674
Query: 463 VAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNL 522
DS+IL+ + L + +E + R+ R L+
Sbjct: 675 ----------DSMILLGSIQRLQLI---------KLIEKHIGRE----------RRLQVA 705
Query: 523 LKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNI 582
K ++ E + R +ER RRPSRFEV PAPD+L+ V +D
Sbjct: 706 QKWHKEAEERAREEMERQL------REQERTRRPSRFEVIPAPDILKMQRQSV---NDLT 756
Query: 583 PRTENLDGPQ----FCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR- 637
+ N GP P+FG QPKKSILKKTNSF+LK FSP+++P VTPYTTVTGAESR
Sbjct: 757 MSSNNGGGPDHNTYHSPIFGSQPKKSILKKTNSFTLKGFSPLVSPAVTPYTTVTGAESRQ 816
Query: 638 IRMAFEAIFHKSATLQDANPDPESGREALLSDHCGQTNT-SNVRIVPPSPGPFKKVQL 694
IR+AFEAIF KSATLQD +PDPE G SD + + ++ PSP KKVQL
Sbjct: 817 IRLAFEAIFRKSATLQDVDPDPEMGSGTRRSDSQEVISVPPHTPMLAPSPATSKKVQL 874
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322800715|gb|EFZ21619.1| hypothetical protein SINV_00748 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/601 (61%), Positives = 439/601 (73%), Gaps = 50/601 (8%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVTTVYFA+RNYWRGFF AVCGAT+FRLLA+WF +EET+ A F T+FTM+FPFD
Sbjct: 236 GVLFSIEVTTVYFAVRNYWRGFFAAVCGATMFRLLAIWFQSEETITAMFATSFTMEFPFD 295
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
PQEL VFALIGV G GA YVW HRQYV+FMR+NK MN+FLQKNRFLYPGIV LL +SV
Sbjct: 296 PQELLVFALIGVGSGLMGAFYVWLHRQYVIFMRKNKSMNSFLQKNRFLYPGIVSLLVSSV 355
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNT-DVFVSLACF 281
SFPLGLG++MAGDLNTHDQ+ LF+NFTWTK + +VEE ++KHW+T T DVF L F
Sbjct: 356 SFPLGLGQFMAGDLNTHDQVFGLFTNFTWTKVNLSVEEMNIVKHWSTSYTNDVFSGLLSF 415
Query: 282 MLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGG 341
+L T+IFSII+ST+PVPSG FIPVFKIGAA GR +GE + L FP G+ +G I PIIPGG
Sbjct: 416 VLVTFIFSIISSTVPVPSGIFIPVFKIGAALGRAVGEGMALWFPTGVRYGGIITPIIPGG 475
Query: 342 YATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSIIL 401
YATVGAAAFSGAVTHTISVSVI+FEMTGQITHI+P+MIAVLISNA+AALLQPS+YDSIIL
Sbjct: 476 YATVGAAAFSGAVTHTISVSVIIFEMTGQITHIVPIMIAVLISNAIAALLQPSIYDSIIL 535
Query: 402 IKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES 461
IKKLPYLPDLLPSSSG+YNVYVEDFM+RDVKYIW+ ++Y+ LK++LKENR LR FPLV++
Sbjct: 536 IKKLPYLPDLLPSSSGMYNVYVEDFMIRDVKYIWHGISYQKLKDILKENRKLRGFPLVDN 595
Query: 462 SVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKN 521
DS+IL+ + L + +E + R+ R L+
Sbjct: 596 P----------DSMILLGSIQRLALI---------KLIEKHIGRE----------RRLQV 626
Query: 522 LLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDN 581
K ++ E + R +ER RRPSRFEV PAPD+L+ V +D
Sbjct: 627 AQKWHKEAEERAREEIERQL------REQERTRRPSRFEVIPAPDILKMQRQSV---NDL 677
Query: 582 IPRTENLDGPQ----FCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637
N GP P+FG QPKKSILKKTNSF+LK FSP+++P VTPYTTVTGAESR
Sbjct: 678 TMSPNNGSGPDHHTYHSPIFGSQPKKSILKKTNSFTLKGFSPLVSPAVTPYTTVTGAESR 737
Query: 638 ----IRMAFEAIFHKSATLQDANPDPESGREALLSDHCGQTNTSNVRIVPPSPGPFKKVQ 693
IR+AFEAIF KSATLQD +PDPE G Q++T ++ PSP KKVQ
Sbjct: 738 RVAAIRLAFEAIFRKSATLQDVDPDPELGTRGSQDAINAQSHTP---MLAPSPATSKKVQ 794
Query: 694 L 694
L
Sbjct: 795 L 795
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242009651|ref|XP_002425596.1| Chloride channel protein ClC-Ka, putative [Pediculus humanus corporis] gi|212509489|gb|EEB12858.1| Chloride channel protein ClC-Ka, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/601 (60%), Positives = 433/601 (72%), Gaps = 54/601 (8%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVTTVYFA+RNYWRGFF AVCGAT FRLLAVWF E+T+ A F T+FT DFPFD
Sbjct: 235 GVLFSIEVTTVYFAVRNYWRGFFAAVCGATFFRLLAVWFKKEDTVTAVFATDFTNDFPFD 294
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
PQEL VF+ IG CG GGA YVW HRQYVLFMR+NKKMN FLQKNRFLYPGIV L+A S
Sbjct: 295 PQELIVFSCIGAFCGLGGAFYVWVHRQYVLFMRKNKKMNKFLQKNRFLYPGIVSLMAAST 354
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFM 282
FPLGLG+YMAGDL+THDQ++SLF+NFTWTK FTVEE E+L+HW+T +++VFVSL F
Sbjct: 355 CFPLGLGRYMAGDLSTHDQVTSLFTNFTWTKSEFTVEEVEILRHWSTDHSNVFVSLGGFT 414
Query: 283 LYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGY 342
L+T++FSII STIPVPSGSFIPVFKIGA GR +GE++ + FP G+ +G FI PIIPGGY
Sbjct: 415 LFTFVFSIIGSTIPVPSGSFIPVFKIGAGIGRAMGELMHIWFPYGVRYGGFITPIIPGGY 474
Query: 343 ATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSIILI 402
ATVGAAAFSGAVTH+ISVSVI+FEMTGQITHIIP+MIAVLISNA AALLQPSLYDSIILI
Sbjct: 475 ATVGAAAFSGAVTHSISVSVIVFEMTGQITHIIPIMIAVLISNATAALLQPSLYDSIILI 534
Query: 403 KKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 462
KKLPYLPDLLPSSSG+Y++YVEDFM+RDVKYIWN MTY++LKN+L+ENR+LR FPLV+
Sbjct: 535 KKLPYLPDLLPSSSGMYSIYVEDFMIRDVKYIWNGMTYKELKNILQENRNLRGFPLVDKP 594
Query: 463 VAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNL 522
+S+IL+ + L R ++
Sbjct: 595 ----------ESMILLGSMQRLE-----------------------------LRRLIQKQ 615
Query: 523 LKENRSLRVFPLVESSGK---FEQMEIKRRE---ERQRRPSRFEVTPAPDLLRGNPHGVS 576
+ R L+V + + E++E K +E ++QRRPSRFEV P D++ N
Sbjct: 616 IGRERRLQVVAKWQKEAQQRVMEELEKKMQEANNKKQRRPSRFEVVPTKDVI--NSLNTL 673
Query: 577 ASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAES 636
S D T+ PVFG QPKKSILKKTNSF+L++ + P TPY+T+TGAES
Sbjct: 674 PSHDFHYSTQR----HHHPVFGIQPKKSILKKTNSFNLRDSGLLTPPRGTPYSTITGAES 729
Query: 637 RIRMAFEAIFHKSATLQDANPDPESGREALLS---DHCGQTNTSNVRIVPPSPGPFKKVQ 693
RIR+AFEAIF KS TLQD NPDPE+G E ++ D T++ P KKVQ
Sbjct: 730 RIRLAFEAIFKKSTTLQDVNPDPEAGEELKMTPINDVTVIRETNSGMATPIGHTNLKKVQ 789
Query: 694 L 694
L
Sbjct: 790 L 790
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 704 | ||||||
| FB|FBgn0051116 | 1193 | ClC-a "Chloride channel-a" [Dr | 0.509 | 0.300 | 0.651 | 2.1e-154 | |
| ZFIN|ZDB-GENE-070705-19 | 940 | clcn2 "chloride channel 2" [Da | 0.519 | 0.389 | 0.504 | 1.9e-92 | |
| UNIPROTKB|E1BLQ0 | 988 | CLCN1 "Uncharacterized protein | 0.518 | 0.369 | 0.486 | 1.7e-91 | |
| UNIPROTKB|F1N0K8 | 903 | CLCN2 "Uncharacterized protein | 0.519 | 0.405 | 0.495 | 1.9e-91 | |
| UNIPROTKB|I3LMX7 | 910 | CLCN2 "Uncharacterized protein | 0.522 | 0.404 | 0.490 | 3e-91 | |
| UNIPROTKB|F1NAL0 | 847 | F1NAL0 "Uncharacterized protei | 0.525 | 0.436 | 0.482 | 3.5e-91 | |
| UNIPROTKB|F1PJ67 | 904 | CLCN2 "Uncharacterized protein | 0.521 | 0.405 | 0.489 | 3.8e-91 | |
| UNIPROTKB|Q9MZT1 | 976 | CLCN1 "Chloride channel protei | 0.518 | 0.373 | 0.481 | 1.2e-90 | |
| UNIPROTKB|F1SRV8 | 994 | CLCN1 "Uncharacterized protein | 0.501 | 0.355 | 0.497 | 1.5e-90 | |
| ZFIN|ZDB-GENE-060503-333 | 1011 | clcn1a "chloride channel 1a" [ | 0.522 | 0.363 | 0.479 | 3.1e-90 |
| FB|FBgn0051116 ClC-a "Chloride channel-a" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1286 (457.8 bits), Expect = 2.1e-154, Sum P(2) = 2.1e-154
Identities = 234/359 (65%), Positives = 291/359 (81%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVTT YFA+RNYWRGFF AVCGATVFRLLAVWF N +T+RA F TNFT +FPFD
Sbjct: 339 GVLFSIEVTTTYFAVRNYWRGFFAAVCGATVFRLLAVWFQNADTVRALFLTNFTTEFPFD 398
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
PQEL VFALIG+VCG GGA YVW HR+YVLFMR NK+MN FLQKNRFLYPG + LL +S+
Sbjct: 399 PQELFVFALIGLVCGLGGASYVWVHRRYVLFMRSNKRMNKFLQKNRFLYPGFLALLVSSI 458
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFM 282
SFPLG G+++AG+L+TH+Q++ LFSNFTW++ TVE+ V+ HW T T VF +L +
Sbjct: 459 SFPLGTGQFLAGELSTHEQVTQLFSNFTWSRDDLTVEQAAVVTHWMTSYTSVFGNLVIYT 518
Query: 283 LYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGY 342
L+T++ SIIASTIPVPSG FIPVFKIGA FGR++GE + + FP G+ +G ++PI+PGGY
Sbjct: 519 LFTFVVSIIASTIPVPSGMFIPVFKIGAGFGRLVGEFMAVTFPHGVRYGGRLSPIMPGGY 578
Query: 343 ATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDXXXXX 402
A VGAAAFSG+VTHT+SV+VI+FEMTGQITH++PVMIAVL++NAVAALLQPS+YD
Sbjct: 579 AVVGAAAFSGSVTHTVSVAVIIFEMTGQITHVVPVMIAVLVANAVAALLQPSIYDSIILI 638
Query: 403 XXXXXXXXXXXXXXGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES 461
G+Y+++VEDFMVRDVKYIW+ ++Y+ LK +LK N++LR PLV+S
Sbjct: 639 KKLPYLPDLLPSSSGMYSIFVEDFMVRDVKYIWHGISYQKLKEVLKLNKTLRSLPLVDS 697
|
|
| ZFIN|ZDB-GENE-070705-19 clcn2 "chloride channel 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 921 (329.3 bits), Expect = 1.9e-92, P = 1.9e-92
Identities = 188/373 (50%), Positives = 247/373 (66%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVT+ +FA+RNYWRGFF A A +FR+LAVW +EET+ A F T F +DFPFD
Sbjct: 244 GVLFSIEVTSTFFAVRNYWRGFFAATFSAFIFRVLAVWNKDEETITALFKTRFRLDFPFD 303
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
QEL FA++G+ GFGGA YV+ +R V MR+ K +N FL K R +YP +V LL +++
Sbjct: 304 LQELPAFAVLGIASGFGGALYVYLNRIIVESMRKQKTINKFLLKKRLVYPAVVTLLISTL 363
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKH----WTTRNTDVFVSL 278
+FP G G++MAG L H+ L +LF N TW K EE E H W VF++L
Sbjct: 364 TFPPGFGQFMAGQLTQHESLVALFDNLTWYK-QGVAEEFEYSSHVPQAWKHPQVSVFITL 422
Query: 279 ACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPII 338
F++ + S +A+T+PVP G+F+PVF IGAAFGR++GE + FPDGI + PI+
Sbjct: 423 LLFIVMKFWMSAVATTMPVPCGAFMPVFLIGAAFGRLVGESMAAFFPDGIHADSTVYPIV 482
Query: 339 PGGYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDX 398
PGGYA VGAAA SGAVTHT+S +VI+FE+TGQI+HI+PVMIAV+++NAVA LQPSLYD
Sbjct: 483 PGGYAVVGAAALSGAVTHTVSTAVIVFELTGQISHILPVMIAVILANAVAQSLQPSLYDS 542
Query: 399 XXXXXXXXXXXXXXXXXXGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPL 458
YN+ VED MVRDV+YI + +YRDL+ L + L+ L
Sbjct: 543 IIRIQKLPYLPELGWGQEK-YNIRVEDIMVRDVRYITLSSSYRDLQEALVTGQ-LKTLAL 600
Query: 459 VESSVAALLQPSL 471
VES + +L S+
Sbjct: 601 VESKESMILLGSI 613
|
|
| UNIPROTKB|E1BLQ0 CLCN1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
Identities = 181/372 (48%), Positives = 249/372 (66%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVT+ YFA+RNYWRGFF A A VFR+LAVW + T+ A F TNF MDFPFD
Sbjct: 285 GVLFSIEVTSTYFAVRNYWRGFFAATFSAFVFRVLAVWNKDAVTITALFRTNFRMDFPFD 344
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
QEL FA+IG+ CGF GA +V+ HRQ +L +R++K ++ FL K+R LYPGIV + S
Sbjct: 345 LQELPAFAIIGICCGFLGAVFVYLHRQVMLGVRKHKVLSQFLAKHRLLYPGIVTFVIASF 404
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKH---WTTRNTDVFVSLA 279
+FP G+G++MAG+L + +S+LF N TW K H + + E L W V + L
Sbjct: 405 TFPPGIGQFMAGELMPREAISTLFDNNTWVK-H--IGDPESLGRSAVWIHPKASVVIVLL 461
Query: 280 CFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIP 339
F + + SI+A+T+P+P G F+PVF +GAAFGR++GEI+ + FPDGI I I+P
Sbjct: 462 LFFIMKFWMSIVATTMPIPCGGFMPVFVLGAAFGRLVGEIMAMLFPDGILFDDIIYKILP 521
Query: 340 GGYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDXX 399
GGYA +GAAA +GAV+HT+S +VI FE+TGQI HI+P+M+AV+++N VA LQPSLYD
Sbjct: 522 GGYAVIGAAALTGAVSHTVSTAVICFELTGQIAHILPMMVAVILANMVAQSLQPSLYDSI 581
Query: 400 XXXXXXXXXXXXXXXXXGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLV 459
+ ++VED MVRDVK++ + TY +L+NLL + +++ PLV
Sbjct: 582 IQVKKLPYLPDLGWNQLSKFTIFVEDIMVRDVKFVSASCTYGELRNLL-QTTTVKTLPLV 640
Query: 460 ESSVAALLQPSL 471
ES + +L S+
Sbjct: 641 ESKDSMILLGSV 652
|
|
| UNIPROTKB|F1N0K8 CLCN2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 1.9e-91, Sum P(2) = 1.9e-91
Identities = 185/373 (49%), Positives = 247/373 (66%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVT+ +FA+RNYWRGFF A A +FR+LAVW +EET+ A F T F +DFPFD
Sbjct: 261 GVLFSIEVTSTFFAVRNYWRGFFAATFSAFIFRVLAVWNRDEETITALFKTRFRLDFPFD 320
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
QEL FA+IG+ GFGGA +V+ +R+ V MR+ K +N FL K R L+P +V LL +++
Sbjct: 321 LQELPAFAVIGIASGFGGALFVYLNRKIVQVMRKQKTINRFLMKKRLLFPALVTLLISTL 380
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQE---VLKHWTTRNTDVFVSLA 279
+FP G G++MAG L+ + L +LF N TW + +EE E + W +VF++L
Sbjct: 381 TFPAGFGQFMAGQLSQKETLVTLFDNRTWVRQGL-MEELEPPGTSQAWNPPRANVFLTLV 439
Query: 280 CFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGI-THGKFIAPII 338
F+L + S +A+TIPVP G+F+PVF IGAAFGR++GE + FPDGI T G I+
Sbjct: 440 IFILMKFWMSALATTIPVPCGAFMPVFVIGAAFGRLVGESMAAWFPDGIHTDGSTYR-IV 498
Query: 339 PGGYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDX 398
PGGYA VGAAA +GAVTHT+S +VI+FE+TGQI HI+PVMIAV+++NAVA LQPSLYD
Sbjct: 499 PGGYAVVGAAALAGAVTHTVSTAVIVFELTGQIAHILPVMIAVILANAVAQSLQPSLYDS 558
Query: 399 XXXXXXXXXXXXXXXXXXGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPL 458
Y V VED MVRDV ++ + T+RDL+ L + R+ L
Sbjct: 559 IIRIKKLPYLPELGWGRHQQYRVRVEDIMVRDVPHVALSCTFRDLRLALHRTKG-RMLAL 617
Query: 459 VESSVAALLQPSL 471
VES + +L S+
Sbjct: 618 VESPESMILLGSI 630
|
|
| UNIPROTKB|I3LMX7 CLCN2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 3.0e-91, Sum P(2) = 3.0e-91
Identities = 182/371 (49%), Positives = 244/371 (65%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVT+ +FA+RNYWRGFF A A +FR+LAVW +EET+ A F T F +DFPFD
Sbjct: 265 GVLFSIEVTSTFFAVRNYWRGFFAATFSAFIFRVLAVWNRDEETITALFKTRFRLDFPFD 324
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
QEL FA+IG+ GFGGA +V+ +R+ V MR+ K +N FL K R L+P +V LL +++
Sbjct: 325 LQELPAFAVIGIASGFGGALFVYLNRKIVQVMRKQKTINRFLMKKRLLFPALVTLLISTL 384
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFT--VEEQEVLKHWTTRNTDVFVSLAC 280
+FP G G++MAG L+ + L +LF N TW + VE + W+ +VF++L
Sbjct: 385 TFPPGFGQFMAGQLSQKETLVTLFDNRTWVRQGLMEEVEPPGTSQAWSPPRANVFLTLVI 444
Query: 281 FMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPG 340
F+L + S +A+TIPVP G+F+PVF IGAAFGR++GE + FPDGI I+PG
Sbjct: 445 FILMKFWMSALATTIPVPCGAFMPVFVIGAAFGRLVGESMAAWFPDGIHTDSSTYRIVPG 504
Query: 341 GYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDXXX 400
GYA VGAAA +GAVTHT+S +VI+FE+TGQI HI+PVMIAV+++NAVA LQPSLYD
Sbjct: 505 GYAVVGAAALAGAVTHTVSTAVIVFELTGQIAHILPVMIAVILANAVAQSLQPSLYDSII 564
Query: 401 XXXXXXXXXXXXXXXXGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE 460
Y V VED MVRDV ++ + T+RDL+ L + R+ LVE
Sbjct: 565 RIKKLPYLPELGWGRHQQYRVRVEDIMVRDVPHVALSCTFRDLRLALHRTKG-RMLALVE 623
Query: 461 SSVAALLQPSL 471
S + +L S+
Sbjct: 624 SPESMILLGSI 634
|
|
| UNIPROTKB|F1NAL0 F1NAL0 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
Identities = 181/375 (48%), Positives = 249/375 (66%)
Query: 99 ALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMD 158
AL GVLFSIEVT+ YFA+RNYWRGFF A A +FR+LAVW + T+ A F TNF MD
Sbjct: 232 ALLGGVLFSIEVTSTYFAVRNYWRGFFAATFSAFIFRVLAVWNKDAVTITALFRTNFRMD 291
Query: 159 FPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLL 218
FPFD QEL FA+IG+ GF GA +V+ +RQ VL +RR ++ FL K+ +YPG +
Sbjct: 292 FPFDLQELPAFAVIGICSGFLGAFFVYLNRQVVLCIRRLTALSQFLTKHFLIYPGFITFF 351
Query: 219 ATSVSFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKH--WTTRNTDVFV 276
SV+FP G G++MAG+L + +SSLF N+TW K +T + Q + K W VF+
Sbjct: 352 IASVTFPPGFGQFMAGELMPREAISSLFDNYTWAK--YTGDPQILGKSAAWIHPKVSVFI 409
Query: 277 SLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAP 336
+ F L + S+IA+T+P+P G F+PVF +GAAFGR+IGEI+ FPDGI +
Sbjct: 410 IILLFFLMKFWMSVIATTMPIPCGGFMPVFVLGAAFGRLIGEIMASLFPDGILFDGIVYK 469
Query: 337 IIPGGYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLY 396
I+PGGYA +GAAA +GAV+HT+S +VI FE+TGQI+HI+P+M+AV+++N VA LQPSLY
Sbjct: 470 ILPGGYAVIGAAALTGAVSHTVSTAVICFELTGQISHILPMMVAVILANMVAQSLQPSLY 529
Query: 397 DXXXXXXXXXXXXXXXXXXXGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVF 456
D YN++VED MV+DVK++ +N YRDL+ LL ++ +++
Sbjct: 530 DSIIQVKKLPYLPDLGWNHISKYNIFVEDIMVQDVKFVSSNCKYRDLQTLL-QSTTVKTL 588
Query: 457 PLVESSVAALLQPSL 471
PLV+S +L S+
Sbjct: 589 PLVDSPETMILLGSV 603
|
|
| UNIPROTKB|F1PJ67 CLCN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 886 (316.9 bits), Expect = 3.8e-91, Sum P(2) = 3.8e-91
Identities = 182/372 (48%), Positives = 246/372 (66%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVT+ +FA+RNYWRGFF A A +FR+LAVW +EET+ A F T F +DFPFD
Sbjct: 262 GVLFSIEVTSTFFAVRNYWRGFFAATFSAFIFRVLAVWNRDEETITALFKTRFRLDFPFD 321
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
QEL FA+IG+ GFGGA +V+ +R+ V MR+ K +N FL K R L+P +V LL +++
Sbjct: 322 LQELPAFAVIGIASGFGGALFVYLNRKIVQVMRKQKTINRFLMKKRLLFPALVTLLISTL 381
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQE---VLKHWTTRNTDVFVSLA 279
+FP G G++MAG L+ + L +LF N TW + +EE E + W+ +VF++L
Sbjct: 382 TFPPGFGQFMAGQLSQKETLVTLFDNRTWVRQGL-MEELEPPGTSQAWSPPRANVFLTLV 440
Query: 280 CFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIP 339
F+L + S +A+TIPVP G+F+PVF IGAAFGR++GE + FPDGI I+P
Sbjct: 441 IFILMKFWMSALATTIPVPCGAFMPVFVIGAAFGRLVGESMAAWFPDGIHTDSSTYRIVP 500
Query: 340 GGYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDXX 399
GGYA VGAAA +GAVTHT+S +VI+FE+TGQI HI+PVMIAV+++NAVA LQPSLYD
Sbjct: 501 GGYAVVGAAALAGAVTHTVSTAVIVFELTGQIAHILPVMIAVILANAVAQSLQPSLYDSI 560
Query: 400 XXXXXXXXXXXXXXXXXGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLV 459
Y + VED MVRDV ++ + T+RDL+ L + R+ LV
Sbjct: 561 IRIKKLPYLPELGWGRHQQYRMRVEDIMVRDVPHVALSCTFRDLRLALHRTKG-RMLALV 619
Query: 460 ESSVAALLQPSL 471
ES + +L S+
Sbjct: 620 ESPESMILLGSI 631
|
|
| UNIPROTKB|Q9MZT1 CLCN1 "Chloride channel protein 1" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
Identities = 179/372 (48%), Positives = 248/372 (66%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVT+ YFA+RNYWRGFF A A VFR+LAVW + T+ A F TNF MDFPFD
Sbjct: 285 GVLFSIEVTSTYFAVRNYWRGFFAATFSAFVFRVLAVWNKDAVTITALFRTNFRMDFPFD 344
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
QEL FA+IG+ CGF GA +V+ HRQ +L +R++K ++ FL K+R LYPGIV + S
Sbjct: 345 LQELPAFAIIGICCGFLGAVFVYLHRQVMLGVRKHKALSQFLAKHRLLYPGIVTFIIASF 404
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKH---WTTRNTDVFVSLA 279
+FP G+G++MAG+L + +S+LF N TW K H V + E L W +V + +
Sbjct: 405 TFPPGIGQFMAGELMPREAISTLFDNNTWVK-H--VGDPESLGRSAVWIHPRVNVIIIIF 461
Query: 280 CFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIP 339
F + + SI+A+T+P+P G F+PVF +GAAFGR++GEI+ + FPDGI I I+P
Sbjct: 462 LFFIMKFWMSIVATTMPIPCGGFMPVFVLGAAFGRLVGEIMAMLFPDGILFDDIIYKILP 521
Query: 340 GGYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDXX 399
GGYA +GAAA +GAV+HT+S +VI FE+TGQI HI+P+M+AV+++N VA LQPSLYD
Sbjct: 522 GGYAVIGAAALTGAVSHTVSTAVICFELTGQIAHILPMMVAVILANMVAQSLQPSLYDSI 581
Query: 400 XXXXXXXXXXXXXXXXXGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLV 459
+ ++VED MVRDVK++ TY +L+ LL + +++ PLV
Sbjct: 582 IQVKKLPYLPDLGWNQLSKFTIFVEDIMVRDVKFVSATCTYGELRTLL-QTTTVKTLPLV 640
Query: 460 ESSVAALLQPSL 471
+S + +L S+
Sbjct: 641 DSKDSMILLGSV 652
|
|
| UNIPROTKB|F1SRV8 CLCN1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
Identities = 179/360 (49%), Positives = 243/360 (67%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVT+ YFA+RNYWRGFF A A VFR+LAVW + T+ A F TNF MDFPFD
Sbjct: 285 GVLFSIEVTSTYFAVRNYWRGFFAATFSAFVFRVLAVWNKDAVTITALFRTNFRMDFPFD 344
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
QEL FA+IG+ CGF GA +V+ HRQ +L +R++K ++ FL K+R LYPGIV + S
Sbjct: 345 LQELPAFAVIGICCGFLGAVFVYLHRQVMLGVRKHKGLSQFLAKHRLLYPGIVTFVIASF 404
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKH---WTTRNTDVFVSLA 279
+FP G+G++MAG+L + +S+LF N TW K H V + E L W +V V +
Sbjct: 405 TFPPGIGQFMAGELMPREAISTLFDNHTWVK-H--VGDPESLGRSAVWIHPKVNVVVVIL 461
Query: 280 CFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIP 339
F + + SI+A+T+P+P G F+PVF +GAAFGR++GEI+ + FPDGI I I+P
Sbjct: 462 LFFIMKFWMSIVATTMPIPCGGFMPVFVLGAAFGRLVGEIMAMLFPDGILFDDIIYKILP 521
Query: 340 GGYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDXX 399
GGYA +GAAA +GAV+HT+S +VI FE+TGQI HI+P+M+AV+++N VA LQPSLYD
Sbjct: 522 GGYAVIGAAALTGAVSHTVSTAVICFELTGQIAHILPMMVAVILANMVAQSLQPSLYDSI 581
Query: 400 XXXXXXXXXXXXXXXXXGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLV 459
+ ++VED MVRDVK++ + TY +L+NLL + +L+ PLV
Sbjct: 582 IQVKKLPYLPDLGWNQLSKFTIFVEDIMVRDVKFVSASCTYGELQNLL-QTTTLKTLPLV 640
|
|
| ZFIN|ZDB-GENE-060503-333 clcn1a "chloride channel 1a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 178/371 (47%), Positives = 251/371 (67%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLFSIEVT+ YFA+RNYWRG+F A A +FR+L+V+ + T+ A F TNF MDFPFD
Sbjct: 293 GVLFSIEVTSTYFAVRNYWRGYFAATFSAFIFRVLSVFNKDAVTITALFRTNFRMDFPFD 352
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
QEL FA+IG+ CGF GA +V+ +RQ VLFMRR + FL K+R ++P +V L+ T++
Sbjct: 353 LQELPAFAIIGISCGFLGAFFVYLNRQVVLFMRRPNILTRFLTKHRLVFPAVVTLVVTTL 412
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTK--GHFTVEEQEVLKHWTTRNTDVFVSLAC 280
+FP G G++MAG+L + ++SLF NFTWTK G W + +FV L
Sbjct: 413 TFPPGFGQFMAGELMPRECINSLFDNFTWTKIWGSPLPPGLGRSAVWFHPDVSIFVILIL 472
Query: 281 FMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPG 340
F++ + S +++T+P+PSG+F+PVF +GAAFGR++GEI+ FP GI + IIPG
Sbjct: 473 FLIMKFWMSAVSTTMPIPSGAFMPVFVLGAAFGRLVGEIMATLFPHGILFDGILYRIIPG 532
Query: 341 GYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDXXX 400
GYA +GAAA +GAVTHT+S +VI FE+TGQI+HI+P+M+AV+++N VA LQPSLYD
Sbjct: 533 GYAVIGAAALTGAVTHTVSTAVICFELTGQISHILPMMVAVILANMVAQGLQPSLYDSII 592
Query: 401 XXXXXXXXXXXXXXXXGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE 460
YN++VED MVR VK++ + TYR++ +LL ++ SL+ FPLV+
Sbjct: 593 QFKKLPYLPELGFGHISQYNIFVEDIMVRKVKFLCSQSTYREVLHLL-DSTSLKTFPLVD 651
Query: 461 SSVAALLQPSL 471
S + +L S+
Sbjct: 652 SKDSMILLGSI 662
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P35523 | CLCN1_HUMAN | No assigned EC number | 0.5013 | 0.5340 | 0.3805 | yes | N/A |
| Q9MZT1 | CLCN1_CANFA | No assigned EC number | 0.5039 | 0.5340 | 0.3852 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 704 | |||
| cd03683 | 426 | cd03683, ClC_1_like, ClC-1-like chloride channel p | 1e-126 | |
| cd01036 | 416 | cd01036, ClC_euk, Chloride channel, ClC | 2e-61 | |
| pfam00654 | 345 | pfam00654, Voltage_CLC, Voltage gated chloride cha | 3e-42 | |
| cd03684 | 445 | cd03684, ClC_3_like, ClC-3-like chloride channel p | 3e-39 | |
| cd03685 | 466 | cd03685, ClC_6_like, ClC-6-like chloride channel p | 4e-31 | |
| cd00400 | 383 | cd00400, Voltage_gated_ClC, CLC voltage-gated chlo | 2e-27 | |
| cd01031 | 402 | cd01031, EriC, ClC chloride channel EriC | 1e-21 | |
| COG0038 | 443 | COG0038, EriC, Chloride channel protein EriC [Inor | 2e-20 | |
| PRK01862 | 574 | PRK01862, PRK01862, putative voltage-gated ClC-typ | 5e-09 | |
| cd01034 | 390 | cd01034, EriC_like, ClC chloride channel family | 3e-08 | |
| cd03683 | 426 | cd03683, ClC_1_like, ClC-1-like chloride channel p | 4e-07 | |
| PRK01610 | 418 | PRK01610, PRK01610, putative voltage-gated ClC-typ | 3e-05 | |
| PRK05277 | 438 | PRK05277, PRK05277, chloride channel protein; Prov | 6e-04 | |
| cd01033 | 388 | cd01033, ClC_like, Putative ClC chloride channel | 0.002 |
| >gnl|CDD|239655 cd03683, ClC_1_like, ClC-1-like chloride channel proteins | Back alignment and domain information |
|---|
Score = 382 bits (983), Expect = e-126
Identities = 161/313 (51%), Positives = 208/313 (66%), Gaps = 50/313 (15%)
Query: 98 GALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTM 157
GA GVLFSIEVT+ YFA+RNYWRGFF A CGA FRLLAV+F ++ET+ A F T F +
Sbjct: 164 GAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRLLAVFFSDQETITALFKTTFFV 223
Query: 158 DFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVL 217
DFPFD QEL +FAL+G++CG GA +V+ HR+ V F R+N+ + FL+++ LYP IV L
Sbjct: 224 DFPFDVQELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRLFSKFLKRSPLLYPAIVAL 283
Query: 218 LATSVSFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVS 277
L ++FP F++
Sbjct: 284 LTAVLTFP-------------------------------------------------FLT 294
Query: 278 LACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPI 337
L F++ ++ + +A T+PVP+G F+PVF IGAA GR++GEI+ + FP+GI G PI
Sbjct: 295 LFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVLFPEGIRGGI-SNPI 353
Query: 338 IPGGYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYD 397
PGGYA VGAAAFSGAVTHT+SV+VI+FE+TGQI+H++PV+IAVLISNAVA LQPS+YD
Sbjct: 354 GPGGYAVVGAAAFSGAVTHTVSVAVIIFELTGQISHLLPVLIAVLISNAVAQFLQPSIYD 413
Query: 398 SIILIKKLPYLPD 410
SII IKKLPYLPD
Sbjct: 414 SIIKIKKLPYLPD 426
|
This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelial chloride transport. Length = 426 |
| >gnl|CDD|238507 cd01036, ClC_euk, Chloride channel, ClC | Back alignment and domain information |
|---|
Score = 211 bits (538), Expect = 2e-61
Identities = 85/306 (27%), Positives = 129/306 (42%), Gaps = 58/306 (18%)
Query: 98 GALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETM-----RAFFP 152
GA G+LF +E + +F +R WR FF A+ A V ++ + E +
Sbjct: 163 GAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIYNSFNSGFELLDRSSAMFLSL 222
Query: 153 TNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYP 212
T F + P + E +IGV+CG A +V ++ + RR + R L P
Sbjct: 223 TVFELHVPLNLYEFIPTVVIGVICGLLAALFVRLSIIFLRWRRRLLF--RKTARYRVLEP 280
Query: 213 GIVVLLATSVSFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNT 272
+ L+ +++ +
Sbjct: 281 VLFTLIYSTIHY------------------------------------------------ 292
Query: 273 DVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGK 332
+L F+L + S +A I VP G+FIP IGAA GR++G ++ GI
Sbjct: 293 --APTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRIAVAGIGAES 350
Query: 333 FIAPIIPGGYATVGAAAFSGAVT-HTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALL 391
PG YA +GAAAF G T T S+ VIM E+TG + H++P+M+A+LI+ AVA
Sbjct: 351 ATLWADPGVYALIGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVADAF 410
Query: 392 QPSLYD 397
SLY
Sbjct: 411 CESLYH 416
|
These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function. Length = 416 |
| >gnl|CDD|216046 pfam00654, Voltage_CLC, Voltage gated chloride channel | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 3e-42
Identities = 75/291 (25%), Positives = 117/291 (40%), Gaps = 59/291 (20%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVLF++E + F+ R +V A V RLL F + P
Sbjct: 107 GVLFALEELSRSFSYRALLPVLVASVVAALVSRLLFGNE------PLFEVPSLP---PLS 157
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
EL +F L+G++CG GA +V + RR KK L P + LL +
Sbjct: 158 LLELPLFILLGILCGLLGALFVRLLLKVERLFRRLKK------LPPILRPALGGLLVGLL 211
Query: 223 SFP----LGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSL 278
LG G + + L + +T + L
Sbjct: 212 GLFLPEVLGGG---------YGLIQLLLNG----------------------STLSLLLL 240
Query: 279 ACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPII 338
+L + + ++ P G F P IGAA GR++G ++ L FP
Sbjct: 241 LLLLLLKLLATALSLGSGAPGGIFAPSLFIGAALGRLLGLLLPLLFPGI--------APS 292
Query: 339 PGGYATVGAAAFSGAVTHT-ISVSVIMFEMTGQITHIIPVMIAVLISNAVA 388
PG +A +G AAF VT ++ V++FE+TG + ++P+M+AVLI+ V+
Sbjct: 293 PGAFALLGMAAFLAGVTRAPLTAIVLVFELTGSYSLLLPLMLAVLIAYLVS 343
|
This family of ion channels contains 10 or 12 transmembrane helices. Each protein forms a single pore. It has been shown that some members of this family form homodimers. In terms of primary structure, they are unrelated to known cation channels or other types of anion channels. Three ClC subfamilies are found in animals. ClC-1 is involved in setting and restoring the resting membrane potential of skeletal muscle, while other channels play important parts in solute concentration mechanisms in the kidney. These proteins contain two pfam00571 domains. Length = 345 |
| >gnl|CDD|239656 cd03684, ClC_3_like, ClC-3-like chloride channel proteins | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 3e-39
Identities = 97/325 (29%), Positives = 147/325 (45%), Gaps = 47/325 (14%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAF-FPTNFTMDFPF 161
GVLFS+E + YF ++ WR FF A+ A + L + T R F + D+ +
Sbjct: 149 GVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSLNPF----GTGRLVLFEVEYDRDWHY 204
Query: 162 DPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGI-----VV 216
EL F L+G+ G GA F++ N K F +K+ + V
Sbjct: 205 --FELIPFILLGIFGGLYGA----------FFIKANIKWARFRKKSLLKRYPVLEVLLVA 252
Query: 217 LLATSVSFPLGLGKYMAGDLNTHDQLSSLF-----SNFTWTKGHFTVEEQEVLKHWTTRN 271
L+ +SFP + L+ + L LF + +
Sbjct: 253 LITALISFPNPYTR-----LDMTELLELLFNECEPGDDNSLCCYRDPPAG-------DGV 300
Query: 272 TDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIG---EIIFLRFPDGI 328
SL ++ + +I I VP+G F+P +GA FGR++G E + +PD I
Sbjct: 301 YKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGILVEQLAYSYPDSI 360
Query: 329 ---THGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMTGQITHIIPVMIAVLIS 384
+ I PG YA VGAAAF G VT T+S+ VIMFE+TG + +I+P+MIAV++S
Sbjct: 361 FFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVMVS 420
Query: 385 NAVAALLQP-SLYDSIILIKKLPYL 408
VA + +YD+ I + P+L
Sbjct: 421 KWVADAIGKEGIYDAHIHLNGYPFL 445
|
This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidney stones (nephrolithiasis), leading to progressive renal failure. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl- and I-) channel proteins, that perform a variety of functions including cell volume regulation, the membrane potential stabilization, transepithelial chloride transport and charge compensation necessary for the acidification of intracellular organelles. Length = 445 |
| >gnl|CDD|239657 cd03685, ClC_6_like, ClC-6-like chloride channel proteins | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 4e-31
Identities = 87/327 (26%), Positives = 129/327 (39%), Gaps = 87/327 (26%)
Query: 98 GALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTM 157
GA GVLFS+E ++ WR FF+++ N F P M
Sbjct: 204 GAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTLNFFLSG-CNSGKCGLFGPGGLIM 262
Query: 158 DFPFDPQ------ELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLY 211
+ EL F LIGV+ G GA + N K+ F + R +
Sbjct: 263 FDGSSTKYLYTYFELIPFMLIGVIGGLLGALFNH----------LNHKVTRF--RKRINH 310
Query: 212 PG---------IVVLLATSVSFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQE 262
G +V L+ + V+FP
Sbjct: 311 KGKLLKVLEALLVSLVTSVVAFP------------------------------------- 333
Query: 263 VLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFL 322
+L F + Y + I VPSG FIP+ IGAA+GR++G I L
Sbjct: 334 -------------QTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVG--ILL 378
Query: 323 RFPDGITHGKFIAPIIPGGYATVGAAAF-SGAVTHTISVSVIMFEMTGQITHIIPVMIAV 381
G T I PG YA +GAAAF G + T+S++VI+ E+T +T++ P+M+ +
Sbjct: 379 GSYFGFTS------IDPGLYALLGAAAFLGGVMRMTVSLTVILLELTNNLTYLPPIMLVL 432
Query: 382 LISNAVAALLQPSLYDSIILIKKLPYL 408
+I+ V +YD II +K +P+L
Sbjct: 433 MIAKWVGDYFNEGIYDIIIQLKGVPFL 459
|
This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals. Length = 466 |
| >gnl|CDD|238233 cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-27
Identities = 61/286 (21%), Positives = 104/286 (36%), Gaps = 57/286 (19%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
G LF+IEV +++ + +V A V RLL A + P
Sbjct: 152 GALFAIEVLLGEYSVASLIPVLLASVAAALVSRLL---------FGAEPAFGVPLYDPLS 202
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGI--VVLLAT 220
EL ++ L+G++ G G +V R +++ +L P + ++L
Sbjct: 203 LLELPLYLLLGLLAGLVGVLFVRL---LYKIERLFRRLP----IPPWLRPALGGLLLGLL 255
Query: 221 SVSFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLAC 280
+ P LG G+ + + L
Sbjct: 256 GLFLPQVLGS-----------------------GYGAI-------LLALAGELSLLLLLL 285
Query: 281 FMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPG 340
+L + + + P G F P IGAA G G ++ FP PG
Sbjct: 286 LLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPALFPG--------LVASPG 337
Query: 341 GYATVGAAAFSGAVTHT-ISVSVIMFEMTGQITHIIPVMIAVLISN 385
YA VG AA AV ++ +++ E+TG + ++P+M+AV+I+
Sbjct: 338 AYALVGMAALLAAVLRAPLTAILLVLELTGDYSLLLPLMLAVVIAY 383
|
The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore homodimers with one pore per subunit without axial symmetry. Although lacking the typical voltage-sensor found in cation channels, all studied ClC channels are gated (opened and closed) by transmembrane voltage. The gating is conferred by the permeating ion itself, acting as the gating charge. In addition, eukaryotic and some prokaryotic ClC channels have two additional C-terminal CBS (cystathionine beta synthase) domains of putative regulatory function. Length = 383 |
| >gnl|CDD|238504 cd01031, EriC, ClC chloride channel EriC | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 1e-21
Identities = 65/305 (21%), Positives = 109/305 (35%), Gaps = 63/305 (20%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFP-- 160
GVLF +E F+ ++ V RL FF + P
Sbjct: 153 GVLFVLEELRHSFSPLALLTALVASIAADFVSRL-------------FFGLGPVLSIPPL 199
Query: 161 --FDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLL 218
+ + L+G++ G G + S +L + + R L + LL
Sbjct: 200 PALPLKSYWLLLLLGIIAGLLGYLFNRS----LLKSQ--DLYRKLKKLPRELRVLLPGLL 253
Query: 219 ATSVSFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSL 278
PLGL L GH + + +SL
Sbjct: 254 ----IGPLGL------------LLPEALGG-----GHGLILSLA--------GGNFSISL 284
Query: 279 ACFMLYT-YIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPI 337
+ +IF++++ P G F P+ +GA G + G I+ P I
Sbjct: 285 LLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQLGP--------IPIS 336
Query: 338 IPGGYATVGAAAFSGAVTHT-ISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQ-PSL 395
P +A G AAF AV I+ +++ EMTG ++P+M+ L++ VA LL +
Sbjct: 337 APATFAIAGMAAFFAAVVRAPITAIILVTEMTGNFNLLLPLMVVCLVAYLVADLLGGKPI 396
Query: 396 YDSII 400
Y++++
Sbjct: 397 YEALL 401
|
This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter. Length = 402 |
| >gnl|CDD|223116 COG0038, EriC, Chloride channel protein EriC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 2e-20
Identities = 68/317 (21%), Positives = 110/317 (34%), Gaps = 67/317 (21%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
G LF+IEV R V A V LL F +F +
Sbjct: 180 GALFAIEV----LYGRFLEYRALVPVLVAAVVALL--------VAGLFGGPHFLLPIVTT 227
Query: 163 ----PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQK---NRFLYPGIV 215
+L ++ ++G++ G G VL R F ++ L P +
Sbjct: 228 PHMSLWDLLLYLVLGIIAGLFG----------VLLSRLLALSRRFFRRLPLPPLLRPALG 277
Query: 216 VLLATSVSFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVF 275
LL ++ L +L +
Sbjct: 278 GLLVGALGLLFPEVLGNGYGLI----QLALAGEGGLL-------------------VLLL 314
Query: 276 VSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIA 335
+ L + ++++ P G F P IGAA G G ++ L FP I
Sbjct: 315 LFLLKL-----LATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGLLFPPSIL------ 363
Query: 336 PIIPGGYATVGAAAFSGAVTHT-ISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQP- 393
PG +A +G AAF A T ++ V++ EMTG ++P++IA LI+ V+ LL
Sbjct: 364 --EPGLFALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLVSRLLGGR 421
Query: 394 SLYDSIILIKKLPYLPD 410
+Y ++ + P L +
Sbjct: 422 PIYTQLLARRGAPILRE 438
|
Length = 443 |
| >gnl|CDD|234987 PRK01862, PRK01862, putative voltage-gated ClC-type chloride channel ClcB; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 5e-09
Identities = 60/253 (23%), Positives = 97/253 (38%), Gaps = 61/253 (24%)
Query: 159 FPFD-PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRF--LYPGIV 215
FP E+ +F +GV+CG F+R KN+F L +
Sbjct: 231 FPAVTGWEVLLFVALGVLCGAAAP----------QFLRL-----LDASKNQFKRLPVPLP 275
Query: 216 VLLATSVSFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLK-HWTTRNTDV 274
V LA LG + G + S++ W G+ V +L WT
Sbjct: 276 VRLA--------LGGLLVGVI-------SVWVPEVWGNGYSVV--NTILHAPWTW----- 313
Query: 275 FVSLACFMLYTYIFSIIASTIPVPSGS----FIPVFKIGAAFGRMIGEIIFLRFPDGITH 330
+L + + +IA+ SG+ F P +GA G + G + +P +
Sbjct: 314 -QALVAVL----VAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHALWPGHTSA 368
Query: 331 GKFIAPIIPGGYATVGAAAFSGAVTHTISVSVIM-FEMTGQITHIIPVMIAVLISNAVAA 389
P YA VG AF T ++++M FEMT ++P+M++ +++ A
Sbjct: 369 --------PFAYAMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTAR 420
Query: 390 LLQP-SLYDSIIL 401
L S+Y I L
Sbjct: 421 ALGTTSMY-EITL 432
|
Length = 574 |
| >gnl|CDD|238506 cd01034, EriC_like, ClC chloride channel family | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 3e-08
Identities = 46/234 (19%), Positives = 79/234 (33%), Gaps = 57/234 (24%)
Query: 171 LIGVVCGFGGAGY----VWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSVSFPL 226
+ GVV G G + V + F ++ L+ + L +
Sbjct: 207 VCGVVGGLAGGLFARLLVALSS------GLPGWVRRFRRRRPVLFAALCGLALALIGLVS 260
Query: 227 GLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTY 286
G + G L L L W L F+
Sbjct: 261 GGLTFGTGYLQARAALEG----------------GGGLPLWFG--------LLKFL---- 292
Query: 287 IFSIIASTIP-VPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATV 345
+ + S +P G F P +GA G ++ + ++ G + +
Sbjct: 293 --ATLLSYWSGIPGGLFAPSLAVGAGLGSLLAAL-----LGSVSQGALVL---------L 336
Query: 346 GAAAFSGAVTHT-ISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQP-SLYD 397
G AAF VT ++ VI+ EMTG ++P++ A L+++ V+ L+ P LY
Sbjct: 337 GMAAFLAGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLVCPEPLYH 390
|
These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. Length = 390 |
| >gnl|CDD|239655 cd03683, ClC_1_like, ClC-1-like chloride channel proteins | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 4e-07
Identities = 21/29 (72%), Positives = 25/29 (86%)
Query: 458 LVESSVAALLQPSLYDSIILIKKLPYLPD 486
L+ ++VA LQPS+YDSII IKKLPYLPD
Sbjct: 398 LISNAVAQFLQPSIYDSIIKIKKLPYLPD 426
|
This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelial chloride transport. Length = 426 |
| >gnl|CDD|234963 PRK01610, PRK01610, putative voltage-gated ClC-type chloride channel ClcB; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 55/243 (22%), Positives = 92/243 (37%), Gaps = 57/243 (23%)
Query: 163 PQELTVFALIGVVCGFGGAGYVW----SHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLL 218
++ + G++ G G + SHR F+ L
Sbjct: 218 ARDYALIISTGLLAGLCGPLLLTLMNASHR-------------GFVS------------L 252
Query: 219 ATSVSFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSL 278
+ + L LG + G L SLF+ W G+ V Q L + L
Sbjct: 253 KLAPPWQLALGGLIVG-------LLSLFTPAVWGNGYSVV--QSFL------TAPPLLML 297
Query: 279 ACFMLYTYIFSIIAST-IPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPI 337
+ + +++AS+ P G F P +G A G + G + L PD G+ I +
Sbjct: 298 IAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGLWLPD----GEEITLL 353
Query: 338 IPGGYATVGAAAFSGAVTHTISVSVIM-FEMTGQITHIIPVMIAVLISNAVAALLQPSLY 396
+ G A A TH +S +M EMTG+ + ++IA +I++ ++ L+
Sbjct: 354 L----GLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISRTLRR--- 406
Query: 397 DSI 399
DSI
Sbjct: 407 DSI 409
|
Length = 418 |
| >gnl|CDD|235385 PRK05277, PRK05277, chloride channel protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Query: 297 VPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAA-FSGAVT 355
P G F P+ +G G G + FP PG +A G A F+ V
Sbjct: 317 APGGIFAPMLALGTLLGLAFGMVAAALFPQYHIE--------PGTFAIAGMGALFAATVR 368
Query: 356 HTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALL--QPSLYDSI 399
++ V++ EMT I+P++I L + +A L +P +Y ++
Sbjct: 369 APLTGIVLVLEMTDNYQLILPLIITCLGATLLAQFLGGKP-IYSAL 413
|
Length = 438 |
| >gnl|CDD|238505 cd01033, ClC_like, Putative ClC chloride channel | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 59/298 (19%), Positives = 104/298 (34%), Gaps = 80/298 (26%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
G LF++E+ ++R+ A + + +
Sbjct: 152 GALFALEILLRTISLRS-----VVAALATSAIAAAVASLLKG------DHPIYDIPPMQL 200
Query: 163 PQELTVFA-LIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLAT- 220
L ++A L G V G AG+ R+ R + R L+ + L
Sbjct: 201 STPLLIWALLAGPVLGVVAAGF----RRLSQAARAKRPKGK-----RILWQMPLAFLVIG 251
Query: 221 --SVSFP--LGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFV 276
S+ FP LG G+ +A Q +T + +
Sbjct: 252 LLSIFFPQILGNGRALA---------------------------QLAF------STTLTL 278
Query: 277 SLACFMLYTYIFSIIASTIPVPSGSF----IPVFKIGAAFGRMIGEIIFLRFPDGITHGK 332
SL +L + I+A+ + + +G++ P +GA G ++G + P
Sbjct: 279 SLLLILL---VLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIVWNALLP------- 328
Query: 333 FIAPIIPGGYATVGAAAFSGAVTHTISVSVIMF--EMTGQI-THIIPVMIAVLISNAV 387
I +A +GAAAF A T ++ ++ E T Q +IP+M+AV + AV
Sbjct: 329 -PLSI--AAFALIGAAAF-LAATQKAPLTALILVLEFTRQNPLFLIPLMLAVAGAVAV 382
|
Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. Length = 388 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 704 | |||
| KOG0476|consensus | 931 | 100.0 | ||
| KOG0475|consensus | 696 | 100.0 | ||
| KOG0474|consensus | 762 | 100.0 | ||
| PRK01862 | 574 | putative voltage-gated ClC-type chloride channel C | 100.0 | |
| cd03683 | 426 | ClC_1_like ClC-1-like chloride channel proteins. T | 100.0 | |
| cd03684 | 445 | ClC_3_like ClC-3-like chloride channel proteins. T | 100.0 | |
| cd01036 | 416 | ClC_euk Chloride channel, ClC. These domains are f | 100.0 | |
| cd03685 | 466 | ClC_6_like ClC-6-like chloride channel proteins. T | 100.0 | |
| PRK01610 | 418 | putative voltage-gated ClC-type chloride channel C | 100.0 | |
| PF00654 | 355 | Voltage_CLC: Voltage gated chloride channel Mutati | 100.0 | |
| cd01031 | 402 | EriC ClC chloride channel EriC. This domain is fou | 100.0 | |
| cd01033 | 388 | ClC_like Putative ClC chloride channel. Clc protei | 100.0 | |
| COG0038 | 443 | EriC Chloride channel protein EriC [Inorganic ion | 100.0 | |
| PRK05277 | 438 | chloride channel protein; Provisional | 100.0 | |
| cd01034 | 390 | EriC_like ClC chloride channel family. These prote | 100.0 | |
| cd00400 | 383 | Voltage_gated_ClC CLC voltage-gated chloride chann | 100.0 | |
| cd03682 | 378 | ClC_sycA_like ClC sycA-like chloride channel prote | 100.0 | |
| PRK03655 | 414 | putative ion channel protein; Provisional | 100.0 | |
| PRK01862 | 574 | putative voltage-gated ClC-type chloride channel C | 99.53 | |
| COG4109 | 432 | Predicted transcriptional regulator containing CBS | 99.49 | |
| COG3448 | 382 | CBS-domain-containing membrane protein [Signal tra | 99.44 | |
| COG2524 | 294 | Predicted transcriptional regulator, contains C-te | 99.26 | |
| cd00400 | 383 | Voltage_gated_ClC CLC voltage-gated chloride chann | 99.24 | |
| PRK05277 | 438 | chloride channel protein; Provisional | 99.23 | |
| cd01031 | 402 | EriC ClC chloride channel EriC. This domain is fou | 99.23 | |
| PRK10892 | 326 | D-arabinose 5-phosphate isomerase; Provisional | 99.2 | |
| PRK11543 | 321 | gutQ D-arabinose 5-phosphate isomerase; Provisiona | 99.13 | |
| cd04603 | 111 | CBS_pair_KefB_assoc This cd contains two tandem re | 98.95 | |
| cd03682 | 378 | ClC_sycA_like ClC sycA-like chloride channel prote | 98.93 | |
| COG3620 | 187 | Predicted transcriptional regulator with C-termina | 98.92 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 98.91 | |
| cd04619 | 114 | CBS_pair_6 The CBS domain, named after human CBS, | 98.8 | |
| cd03685 | 466 | ClC_6_like ClC-6-like chloride channel proteins. T | 98.77 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 98.74 | |
| TIGR00393 | 268 | kpsF KpsF/GutQ family protein. This model describe | 98.73 | |
| cd04641 | 120 | CBS_pair_28 The CBS domain, named after human CBS, | 98.73 | |
| TIGR01137 | 454 | cysta_beta cystathionine beta-synthase. Members of | 98.72 | |
| cd04600 | 124 | CBS_pair_HPP_assoc This cd contains two tandem rep | 98.72 | |
| cd04639 | 111 | CBS_pair_26 The CBS domain, named after human CBS, | 98.72 | |
| cd04617 | 118 | CBS_pair_4 The CBS domain, named after human CBS, | 98.71 | |
| KOG0476|consensus | 931 | 98.71 | ||
| cd04618 | 98 | CBS_pair_5 The CBS domain, named after human CBS, | 98.7 | |
| cd04801 | 114 | CBS_pair_M50_like This cd contains two tandem repe | 98.7 | |
| cd04630 | 114 | CBS_pair_17 The CBS domain, named after human CBS, | 98.7 | |
| cd04626 | 111 | CBS_pair_13 The CBS domain, named after human CBS, | 98.7 | |
| PRK15094 | 292 | magnesium/cobalt efflux protein CorC; Provisional | 98.69 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 98.68 | |
| cd04623 | 113 | CBS_pair_10 The CBS domain, named after human CBS, | 98.67 | |
| TIGR00400 | 449 | mgtE Mg2+ transporter (mgtE). This family of proka | 98.66 | |
| COG3448 | 382 | CBS-domain-containing membrane protein [Signal tra | 98.66 | |
| cd04613 | 114 | CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two | 98.66 | |
| cd04608 | 124 | CBS_pair_PALP_assoc This cd contains two tandem re | 98.65 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 98.65 | |
| cd04621 | 135 | CBS_pair_8 The CBS domain, named after human CBS, | 98.63 | |
| COG0517 | 117 | FOG: CBS domain [General function prediction only] | 98.63 | |
| cd04595 | 110 | CBS_pair_DHH_polyA_Pol_assoc This cd contains two | 98.6 | |
| cd04605 | 110 | CBS_pair_MET2_assoc This cd contains two tandem re | 98.6 | |
| cd04629 | 114 | CBS_pair_16 The CBS domain, named after human CBS, | 98.59 | |
| cd04596 | 108 | CBS_pair_DRTGG_assoc This cd contains two tandem r | 98.59 | |
| cd04599 | 105 | CBS_pair_GGDEF_assoc2 This cd contains two tandem | 98.58 | |
| cd04800 | 111 | CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains | 98.58 | |
| cd04586 | 135 | CBS_pair_BON_assoc This cd contains two tandem rep | 98.58 | |
| cd04624 | 112 | CBS_pair_11 The CBS domain, named after human CBS, | 98.58 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 98.57 | |
| cd04803 | 122 | CBS_pair_15 The CBS domain, named after human CBS, | 98.57 | |
| cd04601 | 110 | CBS_pair_IMPDH This cd contains two tandem repeats | 98.57 | |
| cd04588 | 110 | CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains | 98.56 | |
| cd04593 | 115 | CBS_pair_EriC_assoc_bac_arch This cd contains two | 98.56 | |
| TIGR03520 | 408 | GldE gliding motility-associated protein GldE. Mem | 98.56 | |
| cd04607 | 113 | CBS_pair_NTP_transferase_assoc This cd contains tw | 98.56 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 98.56 | |
| cd04582 | 106 | CBS_pair_ABC_OpuCA_assoc This cd contains two tand | 98.55 | |
| cd04632 | 128 | CBS_pair_19 The CBS domain, named after human CBS, | 98.55 | |
| cd04615 | 113 | CBS_pair_2 The CBS domain, named after human CBS, | 98.55 | |
| cd04636 | 132 | CBS_pair_23 The CBS domain, named after human CBS, | 98.54 | |
| cd04643 | 116 | CBS_pair_30 The CBS domain, named after human CBS, | 98.54 | |
| cd04635 | 122 | CBS_pair_22 The CBS domain, named after human CBS, | 98.53 | |
| cd04642 | 126 | CBS_pair_29 The CBS domain, named after human CBS, | 98.52 | |
| cd04640 | 126 | CBS_pair_27 The CBS domain, named after human CBS, | 98.52 | |
| cd04611 | 111 | CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two | 98.52 | |
| cd04802 | 112 | CBS_pair_3 The CBS domain, named after human CBS, | 98.52 | |
| cd04625 | 112 | CBS_pair_12 The CBS domain, named after human CBS, | 98.49 | |
| cd04592 | 133 | CBS_pair_EriC_assoc_euk This cd contains two tande | 98.49 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 98.49 | |
| cd04589 | 111 | CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains | 98.49 | |
| cd04585 | 122 | CBS_pair_ACT_assoc2 This cd contains two tandem re | 98.48 | |
| cd04614 | 96 | CBS_pair_1 The CBS domain, named after human CBS, | 98.48 | |
| cd04631 | 125 | CBS_pair_18 The CBS domain, named after human CBS, | 98.47 | |
| cd04612 | 111 | CBS_pair_SpoIVFB_EriC_assoc This cd contains two t | 98.47 | |
| cd04602 | 114 | CBS_pair_IMPDH_2 This cd contains two tandem repea | 98.47 | |
| cd04622 | 113 | CBS_pair_9 The CBS domain, named after human CBS, | 98.47 | |
| cd04583 | 109 | CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan | 98.45 | |
| cd04591 | 105 | CBS_pair_EriC_assoc_euk_bac This cd contains two t | 98.45 | |
| cd04604 | 114 | CBS_pair_KpsF_GutQ_assoc This cd contains two tand | 98.44 | |
| cd04584 | 121 | CBS_pair_ACT_assoc This cd contains two tandem rep | 98.43 | |
| cd04627 | 123 | CBS_pair_14 The CBS domain, named after human CBS, | 98.42 | |
| cd04594 | 104 | CBS_pair_EriC_assoc_archaea This cd contains two t | 98.42 | |
| cd04620 | 115 | CBS_pair_7 The CBS domain, named after human CBS, | 98.4 | |
| PRK14869 | 546 | putative manganese-dependent inorganic pyrophospha | 98.39 | |
| cd04590 | 111 | CBS_pair_CorC_HlyC_assoc This cd contains two tand | 98.39 | |
| cd04633 | 121 | CBS_pair_20 The CBS domain, named after human CBS, | 98.36 | |
| COG2524 | 294 | Predicted transcriptional regulator, contains C-te | 98.35 | |
| PRK01610 | 418 | putative voltage-gated ClC-type chloride channel C | 98.34 | |
| cd04606 | 109 | CBS_pair_Mg_transporter This cd contains two tande | 98.34 | |
| cd04587 | 113 | CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains | 98.33 | |
| cd01036 | 416 | ClC_euk Chloride channel, ClC. These domains are f | 98.31 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 98.3 | |
| cd04610 | 107 | CBS_pair_ParBc_assoc This cd contains two tandem r | 98.3 | |
| cd04637 | 122 | CBS_pair_24 The CBS domain, named after human CBS, | 98.3 | |
| cd02205 | 113 | CBS_pair The CBS domain, named after human CBS, is | 98.28 | |
| cd04634 | 143 | CBS_pair_21 The CBS domain, named after human CBS, | 98.27 | |
| cd04609 | 110 | CBS_pair_PALP_assoc2 This cd contains two tandem r | 98.22 | |
| cd04638 | 106 | CBS_pair_25 The CBS domain, named after human CBS, | 98.22 | |
| PRK11543 | 321 | gutQ D-arabinose 5-phosphate isomerase; Provisiona | 98.21 | |
| cd01033 | 388 | ClC_like Putative ClC chloride channel. Clc protei | 98.21 | |
| PF00571 | 57 | CBS: CBS domain CBS domain web page. Mutations in | 98.18 | |
| COG2239 | 451 | MgtE Mg/Co/Ni transporter MgtE (contains CBS domai | 98.18 | |
| cd04598 | 119 | CBS_pair_GGDEF_assoc This cd contains two tandem r | 98.13 | |
| PRK10892 | 326 | D-arabinose 5-phosphate isomerase; Provisional | 98.05 | |
| cd03684 | 445 | ClC_3_like ClC-3-like chloride channel proteins. T | 98.01 | |
| cd03683 | 426 | ClC_1_like ClC-1-like chloride channel proteins. T | 97.95 | |
| PRK11573 | 413 | hypothetical protein; Provisional | 97.93 | |
| COG0038 | 443 | EriC Chloride channel protein EriC [Inorganic ion | 97.9 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 97.87 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 97.85 | |
| PRK03655 | 414 | putative ion channel protein; Provisional | 97.83 | |
| cd04618 | 98 | CBS_pair_5 The CBS domain, named after human CBS, | 97.83 | |
| cd04641 | 120 | CBS_pair_28 The CBS domain, named after human CBS, | 97.75 | |
| cd04619 | 114 | CBS_pair_6 The CBS domain, named after human CBS, | 97.74 | |
| COG3620 | 187 | Predicted transcriptional regulator with C-termina | 97.73 | |
| cd04597 | 113 | CBS_pair_DRTGG_assoc2 This cd contains two tandem | 97.73 | |
| COG1253 | 429 | TlyC Hemolysins and related proteins containing CB | 97.65 | |
| cd04627 | 123 | CBS_pair_14 The CBS domain, named after human CBS, | 97.61 | |
| TIGR00393 | 268 | kpsF KpsF/GutQ family protein. This model describe | 97.6 | |
| TIGR00400 | 449 | mgtE Mg2+ transporter (mgtE). This family of proka | 97.6 | |
| cd04608 | 124 | CBS_pair_PALP_assoc This cd contains two tandem re | 97.59 | |
| cd01034 | 390 | EriC_like ClC chloride channel family. These prote | 97.54 | |
| cd04614 | 96 | CBS_pair_1 The CBS domain, named after human CBS, | 97.53 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 97.52 | |
| COG0517 | 117 | FOG: CBS domain [General function prediction only] | 97.51 | |
| cd04620 | 115 | CBS_pair_7 The CBS domain, named after human CBS, | 97.5 | |
| PRK15094 | 292 | magnesium/cobalt efflux protein CorC; Provisional | 97.48 | |
| cd04600 | 124 | CBS_pair_HPP_assoc This cd contains two tandem rep | 97.44 | |
| cd04603 | 111 | CBS_pair_KefB_assoc This cd contains two tandem re | 97.42 | |
| cd04617 | 118 | CBS_pair_4 The CBS domain, named after human CBS, | 97.4 | |
| cd04630 | 114 | CBS_pair_17 The CBS domain, named after human CBS, | 97.4 | |
| KOG2550|consensus | 503 | 97.39 | ||
| cd04801 | 114 | CBS_pair_M50_like This cd contains two tandem repe | 97.37 | |
| cd04642 | 126 | CBS_pair_29 The CBS domain, named after human CBS, | 97.36 | |
| cd04587 | 113 | CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains | 97.35 | |
| cd04643 | 116 | CBS_pair_30 The CBS domain, named after human CBS, | 97.34 | |
| KOG1764|consensus | 381 | 97.3 | ||
| cd04613 | 114 | CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two | 97.28 | |
| cd04622 | 113 | CBS_pair_9 The CBS domain, named after human CBS, | 97.27 | |
| cd04593 | 115 | CBS_pair_EriC_assoc_bac_arch This cd contains two | 97.23 | |
| PF00654 | 355 | Voltage_CLC: Voltage gated chloride channel Mutati | 97.23 | |
| TIGR03520 | 408 | GldE gliding motility-associated protein GldE. Mem | 97.23 | |
| cd04585 | 122 | CBS_pair_ACT_assoc2 This cd contains two tandem re | 97.22 | |
| cd04590 | 111 | CBS_pair_CorC_HlyC_assoc This cd contains two tand | 97.22 | |
| PRK14869 | 546 | putative manganese-dependent inorganic pyrophospha | 97.19 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 97.17 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 97.13 | |
| COG4109 | 432 | Predicted transcriptional regulator containing CBS | 97.13 | |
| cd04582 | 106 | CBS_pair_ABC_OpuCA_assoc This cd contains two tand | 97.12 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 97.12 | |
| cd04605 | 110 | CBS_pair_MET2_assoc This cd contains two tandem re | 97.12 | |
| cd04631 | 125 | CBS_pair_18 The CBS domain, named after human CBS, | 97.11 | |
| TIGR01137 | 454 | cysta_beta cystathionine beta-synthase. Members of | 97.05 | |
| cd04588 | 110 | CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains | 97.04 | |
| cd04607 | 113 | CBS_pair_NTP_transferase_assoc This cd contains tw | 97.01 | |
| cd04612 | 111 | CBS_pair_SpoIVFB_EriC_assoc This cd contains two t | 97.01 | |
| cd04800 | 111 | CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains | 97.01 | |
| cd04623 | 113 | CBS_pair_10 The CBS domain, named after human CBS, | 96.96 | |
| cd04598 | 119 | CBS_pair_GGDEF_assoc This cd contains two tandem r | 96.93 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 96.92 | |
| cd04589 | 111 | CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains | 96.92 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 96.92 | |
| COG4536 | 423 | CorB Putative Mg2+ and Co2+ transporter CorB [Inor | 96.9 | |
| cd04599 | 105 | CBS_pair_GGDEF_assoc2 This cd contains two tandem | 96.9 | |
| cd04633 | 121 | CBS_pair_20 The CBS domain, named after human CBS, | 96.89 | |
| cd04596 | 108 | CBS_pair_DRTGG_assoc This cd contains two tandem r | 96.81 | |
| cd04625 | 112 | CBS_pair_12 The CBS domain, named after human CBS, | 96.76 | |
| cd04635 | 122 | CBS_pair_22 The CBS domain, named after human CBS, | 96.74 | |
| cd04583 | 109 | CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan | 96.71 | |
| cd04610 | 107 | CBS_pair_ParBc_assoc This cd contains two tandem r | 96.7 | |
| cd02205 | 113 | CBS_pair The CBS domain, named after human CBS, is | 96.7 | |
| cd04615 | 113 | CBS_pair_2 The CBS domain, named after human CBS, | 96.69 | |
| cd04602 | 114 | CBS_pair_IMPDH_2 This cd contains two tandem repea | 96.67 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 96.66 | |
| cd04595 | 110 | CBS_pair_DHH_polyA_Pol_assoc This cd contains two | 96.65 | |
| PF00571 | 57 | CBS: CBS domain CBS domain web page. Mutations in | 96.64 | |
| cd04606 | 109 | CBS_pair_Mg_transporter This cd contains two tande | 96.63 | |
| cd04802 | 112 | CBS_pair_3 The CBS domain, named after human CBS, | 96.62 | |
| cd04639 | 111 | CBS_pair_26 The CBS domain, named after human CBS, | 96.61 | |
| cd04611 | 111 | CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two | 96.57 | |
| cd04609 | 110 | CBS_pair_PALP_assoc2 This cd contains two tandem r | 96.57 | |
| cd04604 | 114 | CBS_pair_KpsF_GutQ_assoc This cd contains two tand | 96.57 | |
| cd04803 | 122 | CBS_pair_15 The CBS domain, named after human CBS, | 96.54 | |
| cd04601 | 110 | CBS_pair_IMPDH This cd contains two tandem repeats | 96.54 | |
| cd04586 | 135 | CBS_pair_BON_assoc This cd contains two tandem rep | 96.54 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 96.45 | |
| cd04621 | 135 | CBS_pair_8 The CBS domain, named after human CBS, | 96.39 | |
| cd04632 | 128 | CBS_pair_19 The CBS domain, named after human CBS, | 96.35 | |
| cd04626 | 111 | CBS_pair_13 The CBS domain, named after human CBS, | 96.33 | |
| cd04594 | 104 | CBS_pair_EriC_assoc_archaea This cd contains two t | 96.24 | |
| KOG1764|consensus | 381 | 96.2 | ||
| cd04637 | 122 | CBS_pair_24 The CBS domain, named after human CBS, | 96.17 | |
| cd04592 | 133 | CBS_pair_EriC_assoc_euk This cd contains two tande | 96.17 | |
| cd04629 | 114 | CBS_pair_16 The CBS domain, named after human CBS, | 96.11 | |
| cd04624 | 112 | CBS_pair_11 The CBS domain, named after human CBS, | 96.09 | |
| cd04636 | 132 | CBS_pair_23 The CBS domain, named after human CBS, | 96.08 | |
| cd04584 | 121 | CBS_pair_ACT_assoc This cd contains two tandem rep | 96.05 | |
| COG2239 | 451 | MgtE Mg/Co/Ni transporter MgtE (contains CBS domai | 96.02 | |
| PRK11573 | 413 | hypothetical protein; Provisional | 96.01 | |
| COG4535 | 293 | CorC Putative Mg2+ and Co2+ transporter CorC [Inor | 96.0 | |
| cd04640 | 126 | CBS_pair_27 The CBS domain, named after human CBS, | 95.99 | |
| cd04591 | 105 | CBS_pair_EriC_assoc_euk_bac This cd contains two t | 95.87 | |
| cd04638 | 106 | CBS_pair_25 The CBS domain, named after human CBS, | 95.27 | |
| KOG0474|consensus | 762 | 95.04 | ||
| COG4536 | 423 | CorB Putative Mg2+ and Co2+ transporter CorB [Inor | 95.03 | |
| smart00116 | 49 | CBS Domain in cystathionine beta-synthase and othe | 94.95 | |
| cd04634 | 143 | CBS_pair_21 The CBS domain, named after human CBS, | 94.72 | |
| COG1253 | 429 | TlyC Hemolysins and related proteins containing CB | 93.62 | |
| cd04597 | 113 | CBS_pair_DRTGG_assoc2 This cd contains two tandem | 92.87 | |
| KOG2550|consensus | 503 | 91.03 | ||
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 90.42 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 85.45 | |
| smart00116 | 49 | CBS Domain in cystathionine beta-synthase and othe | 83.69 | |
| KOG0475|consensus | 696 | 82.08 | ||
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 80.86 |
| >KOG0476|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-102 Score=855.35 Aligned_cols=448 Identities=50% Similarity=0.818 Sum_probs=425.3
Q ss_pred cchhhhHhhhhccccceE--Eeeeeehh-------------hhhhhhccccccccc-CCCcccccccccccccCCCCCcc
Q psy6631 26 TVEEQEVLKHWTTRNTDV--FVSLACFM-------------LYTVCCSALKSPQCI-SPSEITGEDSLTKIEKFPEGRAP 89 (704)
Q Consensus 26 ~~~~~~v~~~~~~~~~~i--~~~~~~~~-------------h~~~~~a~~~~~~~~-~~~~i~g~~~~~~~~~l~~~~ga 89 (704)
||.++++||+|+|.||+| |++|||++ |++++||+.+++... .+++++ +|+-++.++|.+ ||
T Consensus 175 tIlrGv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a~~~~g~~-enesR~~EmLaa--aC 251 (931)
T KOG0476|consen 175 TILRGVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTACQFGGFF-ENESRNMEMLAA--AC 251 (931)
T ss_pred HHHHhhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHHhhccccc-cCcchHHHHHHH--Hh
Confidence 689999999999999999 99999888 999999999998866 778888 788778888875 89
Q ss_pred cchhhhhhcccccccccceeeeccccchHHHHHHHHHHHHHHHHHHHHHhhhc-cccccccccccccCCCCCCChhHHHH
Q psy6631 90 LVVYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFY-NEETMRAFFPTNFTMDFPFDPQELTV 168 (704)
Q Consensus 90 AAGvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~~v~~~l~~~~~-~~~~~~~~F~~~~~~~~~~~~~el~~ 168 (704)
|.||||+|+||+|||||+||+++.||++|||||+||||+|+++++|++..|+. .+.+++++|+++|.+|++|+++|||+
T Consensus 252 AVGVactFsAPiGgVLfSIEvTS~yFAVrnYWRGFFAAtcsA~vFR~lavf~v~~~~tItA~yqT~F~~d~~F~~~ELp~ 331 (931)
T KOG0476|consen 252 AVGVACTFSAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCSAFVFRLLAVFFVEAEVTITALYQTSFRPDFPFDVQELPF 331 (931)
T ss_pred hhhheeeecCccceeEEEEEEeeeeeeHHHHHHHHHHHHhHHHHHHHHHHHcccchhhhHHHHhccCCCCCCCCHHHhHH
Confidence 99999999999999999999999999999999999999999999999999877 34568899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHHHHHHHHHHHHHHhhhhhccccCCCCCcHHHHHHhhhc
Q psy6631 169 FALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSVSFPLGLGKYMAGDLNTHDQLSSLFSN 248 (704)
Q Consensus 169 ~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~p~l~gllvg~l~fP~~~G~~~~g~l~~~~~i~~lf~~ 248 (704)
|+++|++||++|++|++++|++..|+|+|+..+++++++|+++|++++++++.+.||.|+|+|++|+++.+|++.++|+|
T Consensus 332 FallGl~cGllGa~fVylhR~ivlf~Rkn~~~~~~f~k~~llyp~~~a~v~ssltfP~GlG~f~aG~l~f~etl~~fF~N 411 (931)
T KOG0476|consen 332 FALLGLLCGLLGALFVYLHRRIVLFLRKNRYAKKLFQKSRLLYPAFIALVFSSLTFPPGLGQFLAGRLSFRETLVDFFDN 411 (931)
T ss_pred HHHHHHHHhcccceeeeeeeeeeeeehhhHHHHHHHhhCccHHHHHHHHHHhheecCCcccccccccccHHhHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCC--CcchhhHhhhhhcccC--CcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhc
Q psy6631 249 FTWTKG--HFTVEEQEVLKHWTTR--NTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRF 324 (704)
Q Consensus 249 ~~~~~~--~~~~~~~~i~~~~~~~--~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~ 324 (704)
|+|... +-..+...+..+|.++ ...++.+|++|+++||+++++|+++++|+|+|+|.|+|||++||++|+.+..+|
T Consensus 412 ctw~~~~~~~~~~~~~~~~hW~~p~g~~~~f~tL~lf~l~~F~~siia~TipvPsG~FmPvFViGAafGRlvGE~m~~lf 491 (931)
T KOG0476|consen 412 CTWWVQTNDSELCPAHILTHWYHPEGDVSIFGTLVLFFLMYFWMSIIATTIPVPSGVFMPVFVIGAAFGRLVGEIMAVLF 491 (931)
T ss_pred CeeeecCCCcCCCChhhhhhhcCCCCceeeHHHHHHHHHHHHHHHHHHhccccCccceeeeeeechhhhhhhhhhheeec
Confidence 999765 4444556677789876 667899999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCccCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhcCCChHHHHHHHhc
Q psy6631 325 PDGITHGKFIAPIIPGGYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSIILIKK 404 (704)
Q Consensus 325 p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~~is~~viv~ElTG~~~~~lPimia~~is~~va~~l~~siy~~~l~~r~ 404 (704)
|+|++.||...++.||.||++|||||.|+||||+|++||+||+|||..+++|+|||+++||++++.+++|+||+.++.|+
T Consensus 492 P~Gi~~~gi~~~I~PG~YAVVGAAAfsGaVTHTvSvAVIifElTGQl~hiLPVmIAVllaNAVa~~LQPSiYDSII~IKk 571 (931)
T KOG0476|consen 492 PEGIRGGGITPPIHPGGYAVVGAAAFSGAVTHTVSVAVIIFELTGQLCHILPVMIAVLLANAVAASLQPSIYDSIIRIKK 571 (931)
T ss_pred ccccccCCccCccccchhhhhhhhhhccceeeeeeEEEEEEeeccchHHHHHHHHHHHHHHHHHHHhCcchhhheeeecc
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCC
Q psy6631 405 LPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYL 484 (704)
Q Consensus 405 ~p~l~~~~~~~~~l~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~ 484 (704)
+||++|++|++...++++|+|+|.+|++++..++|++|+++++..+ ..+.||+||+. +++.|+|.|.++
T Consensus 572 lPYLPDlpps~~~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~-~lR~~PlV~s~----------esmiLlGSV~R~ 640 (931)
T KOG0476|consen 572 LPYLPDLPPSRSSVHTVKVEHIMVTDVKYITKDTTYRELREALQTT-TLRSFPLVESK----------ESMILLGSVARR 640 (931)
T ss_pred CCcCCCCCCcccceeEEEeeeeccccceeeeccCcHHHHHHHHHhC-ccceeccccCc----------ccceeeehhHHH
Confidence 9999999999999999999999999999999999999999999988 49999999988 779999999998
Q ss_pred CCC
Q psy6631 485 PDL 487 (704)
Q Consensus 485 dll 487 (704)
++.
T Consensus 641 ~L~ 643 (931)
T KOG0476|consen 641 YLT 643 (931)
T ss_pred HHH
Confidence 885
|
|
| >KOG0475|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-61 Score=526.45 Aligned_cols=481 Identities=25% Similarity=0.332 Sum_probs=385.9
Q ss_pred chhhhHhhhhccccceE--Eeeeeehh-------------hhhhhhcccccccccCCCcccccccccccccCCCCCcccc
Q psy6631 27 VEEQEVLKHWTTRNTDV--FVSLACFM-------------LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLV 91 (704)
Q Consensus 27 ~~~~~v~~~~~~~~~~i--~~~~~~~~-------------h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAA 91 (704)
+.-+.+.+.|+..+|++ -+++..++ |+|.||+..+++++. .+++++.++++.|.+ ++||
T Consensus 166 ilSGf~~~~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~----~~~~~e~~~reilsA--aaAa 239 (696)
T KOG0475|consen 166 ILSGFIIRGFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFP----KYRLNEAKKREILSA--AAAA 239 (696)
T ss_pred eeccchhhhhhhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhhHhhhhh----hhccchhHHHHHHHH--Hhhc
Confidence 45566778899999998 33333333 999999999999884 777899889999985 8999
Q ss_pred hhhhhhcccccccccceeeeccccchHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHH
Q psy6631 92 VYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFAL 171 (704)
Q Consensus 92 GvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~il 171 (704)
|||++||||||||||++|+++.+|+.+.+|+.|+||.+|.+++|.+.+ |++++. .+|.++| +.+|++.|+++|++
T Consensus 240 GvavaFgAPIGGVlFslEev~~~fp~ktlw~sff~aLsAv~~L~~i~p-f~~~~~--vLf~V~Y--~~~W~~~EL~pFi~ 314 (696)
T KOG0475|consen 240 GVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALSAVTALRSINP-FGNSRL--VLFYVDY--DRPWSLFELLPFIL 314 (696)
T ss_pred cchhhcCCccceeeeehhhhhhcCCccchHHHHHHHHHHHHHHeeecc-cCCCce--EEEEEec--cCCcccccchHHHH
Confidence 999999999999999999999999999999999999999999999998 566665 5787776 45799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHHHHHHHHHHHHHHhhhhhccccCCCCCcHHHHHHhhhcCcc
Q psy6631 172 IGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSVSFPLGLGKYMAGDLNTHDQLSSLFSNFTW 251 (704)
Q Consensus 172 lGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~p~l~gllvg~l~fP~~~G~~~~g~l~~~~~i~~lf~~~~~ 251 (704)
+|++||+.|.+|+|++.++.++++.. .+.+++.+++++++++++++.||+.+..+ ++.|.+..||+.|.-
T Consensus 315 LGifgGl~G~~~ir~n~~~~~~rK~~-----~lg~~pv~ev~~vt~iTaiIs~~np~~r~-----~~~e~i~~Lf~~C~~ 384 (696)
T KOG0475|consen 315 LGIFGGLWGAFFIRLNIRFCRFRKSS-----KLGKFPVLEVVFVTLVTAIISLFNPETRF-----NMSELITILFNKCSP 384 (696)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchh-----hccCCcchhHHHHHHHHHHHHhcCHHHHh-----hHHHHHHHHHhhcCC
Confidence 99999999999999999877554322 36778899999999999999998887764 457899999998753
Q ss_pred CCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcC--CCcc
Q psy6631 252 TKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFP--DGIT 329 (704)
Q Consensus 252 ~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p--~~~~ 329 (704)
.++.- ..+.. -....+.|+...++|+++|+.|+|+++|+|+|+|||.|||+.||++|.+..++++ +...
T Consensus 385 ~~s~~-l~~~~--------~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~~ 455 (696)
T KOG0475|consen 385 SSSTS-LPETT--------VYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFNL 455 (696)
T ss_pred ccccc-Ccccc--------hHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 33211 00000 1123567888899999999999999999999999999999999999988877765 3322
Q ss_pred CCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhcC-CChHHHHHHHhcCCC
Q psy6631 330 HGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQ-PSLYDSIILIKKLPY 407 (704)
Q Consensus 330 ~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElTG~~~~~lPimia~~is~~va~~l~-~siy~~~l~~r~~p~ 407 (704)
+| ...+.|+.||++||||.++|+|| |+|.+||+||+||++.+++|+|+|+++|.|+++.+. +++||+.++.+|+||
T Consensus 456 fg--~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~l~~IlPlm~av~~SkwI~d~~gk~gIyda~I~~ng~P~ 533 (696)
T KOG0475|consen 456 FG--LSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGALNYILPLMLAVMISKWIGDGLGKTGIYDAHIELNGYPF 533 (696)
T ss_pred cc--hhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCcceeHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCCC
Confidence 22 24679999999999999999999 999999999999999999999999999999999885 589999999999999
Q ss_pred CCCCCCCCccccccccccccccc--eEEecCC-CCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCC
Q psy6631 408 LPDLLPSSSGIYNVYVEDFMVRD--VKYIWNN-MTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYL 484 (704)
Q Consensus 408 l~~~~~~~~~l~~~~V~diM~~~--v~~v~~~-~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~ 484 (704)
++....-++-+ ...+-+-|+.+ ...++.+ +|++|+..+++++ .+++||||-++ ++.+++|++.++
T Consensus 534 l~~k~e~~~t~-~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t-~~sgfpvvl~~----------~sq~lvGfv~rr 601 (696)
T KOG0475|consen 534 LDSKSEFSSTL-AIPVMEPCRSESCLIVITQDSMTLEDLESLMEDT-DFSGFPVVLSE----------DSQRLVGFVLRR 601 (696)
T ss_pred cccccccccch-hhhhhchhcCchhheeccccceeHHHHHHHHhhc-ccCCceEEEcc----------ccceeEEEEchH
Confidence 97533222111 12233333333 4555555 9999999999998 78999999666 457999999988
Q ss_pred CCCCC------Cc-------------------ccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCC
Q psy6631 485 PDLLP------SS-------------------SGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSG 539 (704)
Q Consensus 485 dll~~------~~-------------------~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~ 539 (704)
|+... .+ ........+++|.-.+.++..+++.+-+.+++. .-.+...-|..+++
T Consensus 602 ~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~-~lg~~~~~v~~~G~ 680 (696)
T KOG0475|consen 602 NLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFR-KLGLRQILVTKNGI 680 (696)
T ss_pred HHHHHHhhhccccccceecccccCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHH-hhCceEEEEccCCe
Confidence 88511 00 011234568999999999999999999999994 44455667777788
Q ss_pred ceEEeehHHHhhh
Q psy6631 540 KFEQMEIKRREER 552 (704)
Q Consensus 540 ~~~~i~~~~~~~~ 552 (704)
.+|.++++|....
T Consensus 681 l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 681 LLGIITKKDCLRH 693 (696)
T ss_pred eEeeeehHHHHHh
Confidence 8898888876543
|
|
| >KOG0474|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-61 Score=524.02 Aligned_cols=490 Identities=23% Similarity=0.271 Sum_probs=372.3
Q ss_pred cccccchhhhHhhhhccccceE--Eeeeeehh-------------hhhhhhcccccccccCCCcccccccccccccCCCC
Q psy6631 22 KGHFTVEEQEVLKHWTTRNTDV--FVSLACFM-------------LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEG 86 (704)
Q Consensus 22 ~~~~~~~~~~v~~~~~~~~~~i--~~~~~~~~-------------h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~ 86 (704)
|+|+|+.. +.+.+..||++ +++..++| |.|+|+|+.++|.-+ ..+ +..++.+..+.+|
T Consensus 172 K~YLNGV~---iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S---~~~-r~~~r~fr~FrnD 244 (762)
T KOG0474|consen 172 KCYLNGVK---IPGIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGS---TSL-RKDWRWFRYFRND 244 (762)
T ss_pred hhhhcCcc---CcceeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCc---cch-hhhhhhhhhhccc
Confidence 67777654 56778888988 44444444 999999999998653 222 2333333333332
Q ss_pred --------CcccchhhhhhcccccccccceeeeccccchHHHHHHHHHHHHHHHHHHHHHhhhccccc------cccccc
Q psy6631 87 --------RAPLVVYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEET------MRAFFP 152 (704)
Q Consensus 87 --------~gaAAGvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~~v~~~l~~~~~~~~~------~~~~F~ 152 (704)
||+||||||+|+||+||+|||+||..++|+...+||.||++++++++.|.+..++..+.. -...|.
T Consensus 245 rdrRD~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~~~i~~~~~G~~g~f~~~GLi~f~ 324 (762)
T KOG0474|consen 245 RDRRDLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQALLWRTFFSSAIVAFVLRAFILSCLSGKCGLFGKGGLINFD 324 (762)
T ss_pred chhhhhhhcchHHhHHHHhCCCccceEEEechhhHHHHhhHHHHHHHHhHHHHHhHHHHHHHHhcCchhccCCcceEEec
Confidence 489999999999999999999999999999999999999999999999944433232221 011222
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHHHHHHHHHHHHHHhhhh-hccc
Q psy6631 153 TNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSVSFPLG-LGKY 231 (704)
Q Consensus 153 ~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~p~l~gllvg~l~fP~~-~G~~ 231 (704)
. |+....|+..|+++|+++|+++|++|++|+.++.+...+++++.+ -+..++++.++++++++++.|-.. +..+
T Consensus 325 v-f~~~~~y~~~el~~f~~iGViGGlLGalfN~Ln~~~~~~r~~~~k----~k~~kvlea~~Vs~~ts~~af~l~~l~~C 399 (762)
T KOG0474|consen 325 V-FDGPVDYHIHELPPFLLIGVIGGLLGALFNYLNLKKVLRRYNYEK----GKIGKVLEALLVSLVTSVLAFGLPFLADC 399 (762)
T ss_pred c-cCCccccccccccceeEeehhhhhHHHHHHHHHHHHHHHHHhccC----chHHHHHHHHHHHHHHHHHHhhhHHHhcC
Confidence 2 222345788999999999999999999999998887776665432 244578899999999998765322 2221
Q ss_pred cCCCCCcHHHHHHhhhcCccCCCCcc--------hhhHhhhhhcccC-CcchHHHHHHHHHHHHHHHHHHhhCCcccccc
Q psy6631 232 MAGDLNTHDQLSSLFSNFTWTKGHFT--------VEEQEVLKHWTTR-NTDVFVSLACFMLYTYIFSIIASTIPVPSGSF 302 (704)
Q Consensus 232 ~~g~l~~~~~i~~lf~~~~~~~~~~~--------~~~~~i~~~~~~~-~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF 302 (704)
.+++...+.. -+..+.|.+++|+ .+|+++.+.+..+ +++...+|.+|+++.++++++|+|..+|+|+|
T Consensus 400 --~P~~~~~~~~-~~p~f~Cp~~~YNdlAtL~fnt~ddaVrnLFh~~~~ef~~~tL~iFfv~yf~L~~~TfGi~vpsGlF 476 (762)
T KOG0474|consen 400 --QPCPPSITEG-QCPTFFCPDGEYNDLATLFFNTNDDAVRNLFHSPTNEFGILTLAIFFVLYFFLACWTFGIAVPSGLF 476 (762)
T ss_pred --CCCCCCcccc-cCccccCCCCchhHHHHHHcCCcHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhcccccccch
Confidence 1111000000 1111345555553 3566666655433 67788899999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHhCCchhHHHHHHHH
Q psy6631 303 IPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMTGQITHIIPVMIAV 381 (704)
Q Consensus 303 ~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElTG~~~~~lPimia~ 381 (704)
+|++.+||++||++|.++..++ .++|+.||++||||++||+.| |+|.+||++|+| +..+++|+|++-
T Consensus 477 iP~iL~GAa~GRlvg~~l~~~~-----------~id~G~yAllGAAa~LGG~mRMTvSL~VIl~E~T-n~~~~lPiMlvL 544 (762)
T KOG0474|consen 477 IPVILTGAAYGRLVGMLLGSYT-----------NIDPGLYALLGAAAFLGGVMRMTVSLCVILLELT-NNLLLLPIMLVL 544 (762)
T ss_pred hHHHHhhHHHHHHHHHHHHHhh-----------ccCchHHHHHhHHHHhCCeEEEEeeeehHHHHhh-hhhhhhHHHHHH
Confidence 9999999999999999998875 369999999999999999876 999999999999 778999999999
Q ss_pred HHHHHHHhhcCCChHHHHHHHhcCCCCCCCCCCCccccccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecC
Q psy6631 382 LISNAVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES 461 (704)
Q Consensus 382 ~is~~va~~l~~siy~~~l~~r~~p~l~~~~~~~~~l~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~ 461 (704)
++|.++++.+++++||.++..|++|+++..++ .-+++++++|+|+++++++..-+++....++++.+ +|++|||||+
T Consensus 545 liaK~VGD~FNegiYd~~i~LkgvP~Le~~pe--~~mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t-~HngFPVvd~ 621 (762)
T KOG0474|consen 545 LIAKTVGDSFNEGIYDIIIQLKGVPFLEWEPE--PYMRNLTAGEVMSKPVICLNRVEKVAVIVDVLKST-NHNGFPVVDE 621 (762)
T ss_pred HHHHHHHhhhhhhhHHHhhhccCCccccCCCc--hHhhhhhHhhhccCCeEEEechhhHHHHHHHHHhc-CcCCCccccC
Confidence 99999999999999999999999999997644 45779999999999999999999999999999998 8999999997
Q ss_pred ccccccCCCCcCCeeEEEeecCCCCCC---------C-------------------------------Cccccccccccc
Q psy6631 462 SVAALLQPSLYDSIILIKKLPYLPDLL---------P-------------------------------SSSGIYNVYVED 501 (704)
Q Consensus 462 ~~~~~~~p~~~~~~~LvG~Is~~dll~---------~-------------------------------~~~~~~~~~V~d 501 (704)
. ...+.+++.|.|-+.+++. . .++....+....
T Consensus 622 ~-------~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p 694 (762)
T KOG0474|consen 622 P-------PSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHP 694 (762)
T ss_pred C-------CCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhcccccc
Confidence 6 1112256778776666640 0 000112245578
Q ss_pred ccccCceEEeCCCCHHHHHHHhHh--cCCCceeecccCCCceEEeehHHHh
Q psy6631 502 FMVRDVKYIWNNMTYRDLKNLLKE--NRSLRVFPLVESSGKFEQMEIKRRE 550 (704)
Q Consensus 502 vM~~~v~tV~~d~sl~ea~~~m~~--~~rl~Vvpvv~~~~~~~~i~~~~~~ 550 (704)
+|++.+.+|.++|++..+..++.+ .+++-|+|.. ++.++.++|+|..
T Consensus 695 ~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~--~~~~gilTR~D~~ 743 (762)
T KOG0474|consen 695 FMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKT--NRVVGILTRKDLA 743 (762)
T ss_pred ccCCCCcccCcccchHHHHHHHHHhcceeEEEecCC--CceeEEEehhhhh
Confidence 899999999999999999999955 4555455543 3446777777754
|
|
| >PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-57 Score=520.62 Aligned_cols=417 Identities=14% Similarity=0.156 Sum_probs=342.5
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeeccccchHHHHHHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGA 131 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~ 131 (704)
|+|+++++.+++++. . . +++ + ..|- .||+|||+||+||||+||++|++|+++++|+.++++++++||++|+
T Consensus 143 ~~ga~~~~~~~~~~~-~---~-~~~--~-r~l~-~~G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~ 213 (574)
T PRK01862 143 QLAALAASLVGRFAH-F---D-PPR--L-RLLV-ACGAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVAN 213 (574)
T ss_pred HHHHHHHHHHHHHhC-C---C-HHH--H-HHHH-HHHHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHH
Confidence 999999999999874 1 1 111 1 1122 3699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHH
Q psy6631 132 TVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLY 211 (704)
Q Consensus 132 ~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~ 211 (704)
++++.+.+ .++ .|.++. ..+++..++++++++|++||++|.+|+++.++..+++++ ++.+++++
T Consensus 214 ~v~~~~~g----~~~---~~~~~~--~~~~~~~~~~~~~~lGv~~G~~~~~f~~~~~~~~~~~~~-------~~~~~~~~ 277 (574)
T PRK01862 214 IVMREFAG----YQP---PYEMPV--FPAVTGWEVLLFVALGVLCGAAAPQFLRLLDASKNQFKR-------LPVPLPVR 277 (574)
T ss_pred HHHHHHcC----CCc---eeeCCC--cCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cCCchhHH
Confidence 99998742 333 455432 224678899999999999999999999998877543331 33456788
Q ss_pred HHHHHHHHHHH--HhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHH
Q psy6631 212 PGIVVLLATSV--SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFS 289 (704)
Q Consensus 212 p~l~gllvg~l--~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t 289 (704)
++++|+++|++ ++|..+|.+ ++.+++++.+ ...+..++.++++|+++|
T Consensus 278 ~~~~gl~~g~l~~~~p~~~g~G-------~~~i~~~~~~-----------------------~~~~~~l~~~~~~K~~~t 327 (574)
T PRK01862 278 LALGGLLVGVISVWVPEVWGNG-------YSVVNTILHA-----------------------PWTWQALVAVLVAKLIAT 327 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-------HHHHHHHHcC-----------------------CchHHHHHHHHHHHHHHH
Confidence 89999999976 468777753 6777666542 122345667788999999
Q ss_pred HHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHh
Q psy6631 290 IIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMT 368 (704)
Q Consensus 290 ~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElT 368 (704)
++|+|+|.|||+|+|++++||++|+++|.+++.++|.. ...|+.|+++||+|++++++| |++++++++|||
T Consensus 328 ~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~--------~~~~~~~a~vGmaa~~aa~~~aPlt~i~l~~Elt 399 (574)
T PRK01862 328 AATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHALWPGH--------TSAPFAYAMVGMGAFLAGATQAPLMAILMIFEMT 399 (574)
T ss_pred HHHHccCCCccchhhHHHHHHHHHHHHHHHHHHhCCCc--------ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999888763 246788999999999999999 899999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHhhcC-CChHHHHHHHhcCCCCCCCCCCCccccccccccccccceEEecCCCCHHHHHHHH
Q psy6631 369 GQITHIIPVMIAVLISNAVAALLQ-PSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLL 447 (704)
Q Consensus 369 G~~~~~lPimia~~is~~va~~l~-~siy~~~l~~r~~p~l~~~~~~~~~l~~~~V~diM~~~v~~v~~~~tl~ea~~~l 447 (704)
|++++++|+|+++++||++++.++ +|+|+.++++++.+ .....+..++|+|+|+++..+++++++++|+.+.+
T Consensus 400 ~~~~~~~P~~ia~~~a~~v~~~~~~~~iy~~~~~~~~~~------~~~~~L~~~~V~dim~~~~~~v~~~~tl~ea~~~l 473 (574)
T PRK01862 400 LSYQVVLPLMVSCVVAYFTARALGTTSMYEITLRRHQDE------AERERLRTTQMRELIQPAQTVVPPTASVADMTRVF 473 (574)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHhCCCChHHHHHHhcccc------chhhHHhhCcHHHHhcCCCceeCCCCCHHHHHHHH
Confidence 999999999999999999999885 79999999988632 23456788999999999999999999999999999
Q ss_pred HhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCC--cccccccccccccccCceEEeCCCCHHHHHHHhHh
Q psy6631 448 KENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPS--SSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKE 525 (704)
Q Consensus 448 ~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~--~~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~ 525 (704)
.++ +.+.+||+|++ ++++|+|+.+|+.+.. +.+..+.+++|+|+++++++++|+++.|+.+.|.
T Consensus 474 ~~~-~~~~~~VvD~~------------g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~~~~~~v~~d~~L~~al~~m~- 539 (574)
T PRK01862 474 LEY-PVKYLYVVDDD------------GRFRGAVALKDITSDLLDKRDTTDKTAADYAHTPFPLLTPDMPLGDALEHFM- 539 (574)
T ss_pred HhC-CCceEEEEcCC------------CeEEEEEEHHHHHHHhhcccccccchHHHhccCCCeeECCCCCHHHHHHHHH-
Confidence 887 78899999987 7999999999987532 2222346899999999999999999999999995
Q ss_pred cCCCceeecccCC---CceEEeehHHHhh
Q psy6631 526 NRSLRVFPLVESS---GKFEQMEIKRREE 551 (704)
Q Consensus 526 ~~rl~Vvpvv~~~---~~~~~i~~~~~~~ 551 (704)
..+.+.+||+|++ +.+|.+++.|..+
T Consensus 540 ~~~~~~lpVVd~~~~~~liGvIt~~DIl~ 568 (574)
T PRK01862 540 AFQGERLPVVESEASPTLAGVVYKTSLLD 568 (574)
T ss_pred hcCCCeeeeEeCCCCCeEEEEEEHHHHHH
Confidence 4666677887653 4577777776543
|
|
| >cd03683 ClC_1_like ClC-1-like chloride channel proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-49 Score=436.51 Aligned_cols=325 Identities=53% Similarity=0.902 Sum_probs=257.4
Q ss_pred hhhhccccceE--Eeeeeehh-------------hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhh
Q psy6631 33 LKHWTTRNTDV--FVSLACFM-------------LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLK 97 (704)
Q Consensus 33 ~~~~~~~~~~i--~~~~~~~~-------------h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF 97 (704)
.+++++.|+.+ +++..+++ |+|+++++.++|++... ....++...|+. |- .||+|||+||+|
T Consensus 87 ~~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~~~~-~~~~~~~~~rr~-Li-~~GaaAGlaAaF 163 (426)
T cd03683 87 LPEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLTTFF-SGIYENESRRME-ML-AAACAVGVACTF 163 (426)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccc-cccccCHHHHHH-HH-HhHhhhhhHHhc
Confidence 35666677666 44444333 99999999999877311 110012111111 22 269999999999
Q ss_pred cccccccccceeeeccccchHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHH
Q psy6631 98 GALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCG 177 (704)
Q Consensus 98 ~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~G 177 (704)
||||||++|++||++++|+.+++|+++++|++|+++++++..++.+.......|......+.+++..++++++++|++||
T Consensus 164 ~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~lGv~~G 243 (426)
T cd03683 164 GAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRLLAVFFSDQETITALFKTTFFVDFPFDVQELPIFALLGIICG 243 (426)
T ss_pred CCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccCCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887654443321011222111233577899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHHHHHHHHHHHHHHhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcc
Q psy6631 178 FGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSVSFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFT 257 (704)
Q Consensus 178 l~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~p~l~gllvg~l~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~ 257 (704)
++|.+|++.+++..+++++.++.+++.+.++++++++++++++++.||.
T Consensus 244 l~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~p~------------------------------- 292 (426)
T cd03683 244 LLGALFVFLHRKIVRFRRKNRLFSKFLKRSPLLYPAIVALLTAVLTFPF------------------------------- 292 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHHHH-------------------------------
Confidence 9999999999998877765544444456678899999999998777761
Q ss_pred hhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCc
Q psy6631 258 VEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPI 337 (704)
Q Consensus 258 ~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~ 337 (704)
..+++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.++|++. |..+....
T Consensus 293 ------------------~~l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~~g~~~~~~~p~~~-~~~~~~~~ 353 (426)
T cd03683 293 ------------------LTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVLFPEGI-RGGISNPI 353 (426)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHHHHcCccc-ccCCCCCc
Confidence 12446788999999999999999999999999999999999999999988432 11122346
Q ss_pred chHHHHHHHHHHHHHHhhhhhHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhcCCChHHHHHHHhcCCCCCC
Q psy6631 338 IPGGYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSIILIKKLPYLPD 410 (704)
Q Consensus 338 ~p~~yAlvGmaAf~aav~~~is~~viv~ElTG~~~~~lPimia~~is~~va~~l~~siy~~~l~~r~~p~l~~ 410 (704)
+|+.||++||+|++++++|++++++|++||||++++++|+|+++++||++++.+++|+||.+++.|++||++|
T Consensus 354 ~~~~~alvGmaa~~a~~~ra~~t~vlv~E~Tg~~~~llpl~ia~~ia~~v~~~~~~~iY~~~l~~~~~p~l~~ 426 (426)
T cd03683 354 GPGGYAVVGAAAFSGAVTHTVSVAVIIFELTGQISHLLPVLIAVLISNAVAQFLQPSIYDSIIKIKKLPYLPD 426 (426)
T ss_pred CchHHHHHHHHHHHHHHHhHHHHHheeeeecCCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHhCCCCCCCC
Confidence 8999999999999999999877778999999999999999999999999999998999999999999999985
|
This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia |
| >cd03684 ClC_3_like ClC-3-like chloride channel proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=435.62 Aligned_cols=350 Identities=29% Similarity=0.433 Sum_probs=264.0
Q ss_pred hhhccccceE--Eeeeeehh-------------hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhc
Q psy6631 34 KHWTTRNTDV--FVSLACFM-------------LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKG 98 (704)
Q Consensus 34 ~~~~~~~~~i--~~~~~~~~-------------h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~ 98 (704)
+++++.|+.+ +++..+++ |+|+++|+.++|++... . .+...|+..+ .||+|||+||+||
T Consensus 71 ~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~~~~~---~-~~~~~~r~li--~~GaaAGlaAaF~ 144 (445)
T cd03684 71 RGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRLFPKY---R-RNEAKRREIL--SAAAAAGVAVAFG 144 (445)
T ss_pred cccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHHHHHh---c-cCHHHHHHHH--HHHHhhhhHHhcC
Confidence 5556666666 55555554 99999999999876310 0 1221122222 3699999999999
Q ss_pred ccccccccceeeeccccchHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHH
Q psy6631 99 ALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGF 178 (704)
Q Consensus 99 APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl 178 (704)
|||||++|++||+.++|+.+++|+++++|++|+++++.+..+ +.+.. ..|.+++ ..+++..|+++++++|++||+
T Consensus 145 APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~~~~-~~~~~--~~f~~~~--~~~~~~~~l~~~i~lGi~~Gl 219 (445)
T cd03684 145 APIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSLNPF-GTGRL--VLFEVEY--DRDWHYFELIPFILLGIFGGL 219 (445)
T ss_pred CccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHhccc-CCCCc--eEEeccC--CCCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987542 22121 1343332 235678899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHHHHHHHHHHHHHHh--hhhhccccCCCCCcHHHHHHhhhcCccCCCCc
Q psy6631 179 GGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSVSF--PLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHF 256 (704)
Q Consensus 179 ~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~p~l~gllvg~l~f--P~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~ 256 (704)
+|.+|+++++++.+++++.+ .+.++++++++++++++++.+ |+..|. +++.++++|++|...++..
T Consensus 220 ~g~lf~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~l~~~~l~~~~p~~~~~-------g~~~i~~l~~~~~~~~~~~ 287 (445)
T cd03684 220 YGAFFIKANIKWARFRKKSL-----LKRYPVLEVLLVALITALISFPNPYTRLD-------MTELLELLFNECEPGDDNS 287 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----cchhHHHHHHHHHHHHHHHHhChHHHccc-------hhhHHHHHHhcCCCccccc
Confidence 99999999998876655322 134678899999999998765 444443 4788899998754322110
Q ss_pred chhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHh---cCCCccCC--
Q psy6631 257 TVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLR---FPDGITHG-- 331 (704)
Q Consensus 257 ~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~---~p~~~~~~-- 331 (704)
..+ .............+..+++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.+ +|+...++
T Consensus 288 ~~~--~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g~~~~~~~~~~p~~~~~~~~ 365 (445)
T cd03684 288 LCC--YRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGILVEQLAYSYPDSIFFACC 365 (445)
T ss_pred ccc--cccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHHHHHHHHHhhCCcccccccc
Confidence 000 00000000111245667778899999999999999999999999999999999999999876 35431000
Q ss_pred -CccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhcC-CChHHHHHHHhcCCCC
Q psy6631 332 -KFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQ-PSLYDSIILIKKLPYL 408 (704)
Q Consensus 332 -~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElTG~~~~~lPimia~~is~~va~~l~-~siy~~~l~~r~~p~l 408 (704)
......+|+.||++||+||+++++| |+|+++|++||||++++++|+|+++++||++++.++ +|+||.+++.|++||+
T Consensus 366 ~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~~~~l~pl~ia~~iA~~vs~~~~~~siY~~~l~~~g~p~l 445 (445)
T cd03684 366 TAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVMVSKWVADAIGKEGIYDAHIHLNGYPFL 445 (445)
T ss_pred cCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCCcccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCC
Confidence 0001357899999999999999999 899999999999999999999999999999999996 6999999999999986
|
This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn |
| >cd01036 ClC_euk Chloride channel, ClC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=400.71 Aligned_cols=292 Identities=30% Similarity=0.445 Sum_probs=230.2
Q ss_pred hhhhhhcccccccccCCCccc------ccccccccccCCCCCcccchhhhhhcccccccccceeeeccccchHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEIT------GEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFF 125 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~------g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~ 125 (704)
|+|+++++.+++++....+.. -.+...|+..+ .+|+|||+||+|||||||++|++||+.++|+.+++|++++
T Consensus 113 ~iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll--~aGaaAGlaAaF~APiaGvlFalE~~~~~~~~~~~~~~~~ 190 (416)
T cd01036 113 HLGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFL--VAGAAAGVASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFF 190 (416)
T ss_pred HHHHHHHHHHHhhcccccccccchhhhccCHHHHHHHH--HHHhhcchhhccCCcceeeeeeeHHhhccccHHHHHHHHH
Confidence 999999999998663111100 01111122222 2589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccccc---ccc--ccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy6631 126 TAVCGATVFRLLAVWFYNEETMR---AFF--PTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKM 200 (704)
Q Consensus 126 aav~a~~v~~~l~~~~~~~~~~~---~~F--~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~ 200 (704)
+|++|+++++.+..+........ ..| ..++..+.+++..|+++++++|++||++|.+|+++++++.+++++.++
T Consensus 191 as~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~- 269 (416)
T cd01036 191 AALVSAFVIQIYNSFNSGFELLDRSSAMFLSLTVFELHVPLNLYEFIPTVVIGVICGLLAALFVRLSIIFLRWRRRLLF- 269 (416)
T ss_pred HHHHHHHHHHHhccccCCccccccccccceeccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 99999999998865321111000 001 112222345778999999999999999999999999988776654321
Q ss_pred HHhhhcchhHHHHHHHHHHHHHHhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHH
Q psy6631 201 NAFLQKNRFLYPGIVVLLATSVSFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLAC 280 (704)
Q Consensus 201 ~~~l~~~~~l~p~l~gllvg~l~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~ 280 (704)
.+.++++++++++++++++++.|. ..+++
T Consensus 270 -~~~~~~~~~~~~~~~~i~~~~~~~--------------------------------------------------~~l~~ 298 (416)
T cd01036 270 -RKTARYRVLEPVLFTLIYSTIHYA--------------------------------------------------PTLLL 298 (416)
T ss_pred -ccccchhHHHHHHHHHHHHHHHHH--------------------------------------------------HHHHH
Confidence 123556889999999998877550 12446
Q ss_pred HHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhH
Q psy6631 281 FMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TIS 359 (704)
Q Consensus 281 ~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is 359 (704)
+++.|+++|++|+++|+|||+|+|+|++||++|+++|.+++.++|...++.+.....+|+.||++||+|++++++| |+|
T Consensus 299 ~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~alvGmaa~l~~~~r~Plt 378 (416)
T cd01036 299 FLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRIAVAGIGAESATLWADPGVYALIGAAAFLGGTTRLTFS 378 (416)
T ss_pred HHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHccccccccccCCccChHHHHHHHHHHHhhhhhcchHh
Confidence 7789999999999999999999999999999999999999999886433322223468999999999999999987 899
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHhhcCCChHH
Q psy6631 360 VSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYD 397 (704)
Q Consensus 360 ~~viv~ElTG~~~~~lPimia~~is~~va~~l~~siy~ 397 (704)
+++|++||||++++++|+|+++++||++++.+++|+||
T Consensus 379 ~~vi~~ElTg~~~~l~pl~ia~~ia~~v~~~~~~siY~ 416 (416)
T cd01036 379 ICVIMMELTGDLHHLLPLMVAILIAKAVADAFCESLYH 416 (416)
T ss_pred hhhheeeccCChhhHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 99999999999999999999999999999999999996
|
These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function. |
| >cd03685 ClC_6_like ClC-6-like chloride channel proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=398.51 Aligned_cols=294 Identities=29% Similarity=0.417 Sum_probs=227.1
Q ss_pred hhhhhhcccccccccCCCc----cc--ccccccccccCCCCCcccchhhhhhcccccccccceeeeccccchHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSE----IT--GEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFF 125 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~----i~--g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~ 125 (704)
|+|+++++.+++++...-. .. -+++..++. +- .+|+|||+||+|||||||++|++||+.++|+.+.+|+.++
T Consensus 154 ~iGa~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-li-~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~ 231 (466)
T cd03685 154 HIGACIAAGLSQGGSTSLRLDFRWFRYFRNDRDKRD-FV-TCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFF 231 (466)
T ss_pred hHHHHHHHHHhhccccccccchhhhhhccCHHHHHH-HH-HHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHH
Confidence 9999999999974310000 00 001111111 11 2589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccccc--------ccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6631 126 TAVCGATVFRLLAVWFYNEETMRAFF--------PTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRN 197 (704)
Q Consensus 126 aav~a~~v~~~l~~~~~~~~~~~~~F--------~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~ 197 (704)
+|++|+++++.+...++.... ..| .... ...+++..|+++++++|++||++|.+|++.+++..+++++.
T Consensus 232 ~s~ias~va~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~ 308 (466)
T cd03685 232 SSMIVTFTLNFFLSGCNSGKC--GLFGPGGLIMFDGSS-TKYLYTYFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRI 308 (466)
T ss_pred HHHHHHHHHHHHHHHcCCCCc--cccCCccceeccccc-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999987654322110 012 2111 12357789999999999999999999999999887655432
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHHHHhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHH
Q psy6631 198 KKMNAFLQKNRFLYPGIVVLLATSVSFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVS 277 (704)
Q Consensus 198 ~~~~~~l~~~~~l~p~l~gllvg~l~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 277 (704)
+ +.....+.+.+++++++++.+.+ ...
T Consensus 309 ~---~~~~~~~~l~~~lv~~~~~~~~~--------------------------------------------------~~~ 335 (466)
T cd03685 309 N---HKGKLLKVLEALLVSLVTSVVAF--------------------------------------------------PQT 335 (466)
T ss_pred c---cccchhHHHHHHHHHHHHHHHHH--------------------------------------------------HHH
Confidence 1 10112234444444444443322 012
Q ss_pred HHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-
Q psy6631 278 LACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH- 356 (704)
Q Consensus 278 Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~- 356 (704)
+++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.++|.. ..+|+.||++||+||+++++|
T Consensus 336 l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~~~~--------~~~~~~~aliGmaa~lag~~ra 407 (466)
T cd03685 336 LLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYFGFT--------SIDPGLYALLGAAAFLGGVMRM 407 (466)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHcccc--------CCCchHHHHHHHHHHHhHHhhh
Confidence 34566789999999999999999999999999999999999999887642 368999999999999999988
Q ss_pred hhHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhcCCChHHHHHHHhcCCCCCCC
Q psy6631 357 TISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSIILIKKLPYLPDL 411 (704)
Q Consensus 357 ~is~~viv~ElTG~~~~~lPimia~~is~~va~~l~~siy~~~l~~r~~p~l~~~ 411 (704)
|+|+++|++||||++++++|+|+++++||++++.+++|+||.+++.|++||+.+-
T Consensus 408 Plt~iviv~ElTg~~~~l~pl~ia~~iA~~va~~~~~siY~~~l~~~g~p~l~~~ 462 (466)
T cd03685 408 TVSLTVILLELTNNLTYLPPIMLVLMIAKWVGDYFNEGIYDIIIQLKGVPFLHNG 462 (466)
T ss_pred hHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCC
Confidence 8999999999999999999999999999999999999999999999999999863
|
This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals. |
| >PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=385.48 Aligned_cols=289 Identities=17% Similarity=0.200 Sum_probs=237.5
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeeccccchHHHHHHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGA 131 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~ 131 (704)
|+|+++++.+++++. . . ++ ++ .+- .||+|||+||+||||++|++|++|++.++++.+++.|+++||++|+
T Consensus 125 ~iGa~~g~~~~~~~~--~--~--~~--~r-~li-~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~ 194 (418)
T PRK01610 125 LLAALAASCFAQRFT--P--R--QE--WK-LWI-ACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVAL 194 (418)
T ss_pred HHHHHHHHHHHHHhC--C--h--HH--HH-HHH-HHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999999873 1 1 11 11 122 3799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHH
Q psy6631 132 TVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLY 211 (704)
Q Consensus 132 ~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~ 211 (704)
++++.+. +++++ +|.++. ...++..++++++++|++||++|.+|++..++..++++ ..+.+++++
T Consensus 195 ~v~~~~~---g~~~~---~~~i~~--~~~~~~~~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~-------~~~~~~~~~ 259 (418)
T PRK01610 195 LTTNLLN---GSDAL---LYNVQL--SVTVQARDYALIISTGLLAGLCGPLLLTLMNASHRGFV-------SLKLAPPWQ 259 (418)
T ss_pred HHHHHHc---CCCCC---eeecCC--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------ccccchhHH
Confidence 9999873 22222 455442 22467889999999999999999999999887654332 134467789
Q ss_pred HHHHHHHHHHH--HhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHH
Q psy6631 212 PGIVVLLATSV--SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFS 289 (704)
Q Consensus 212 p~l~gllvg~l--~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t 289 (704)
+.++|+++|++ .+|..+|.+ ++.++.++.+ ...+..++.++++|+++|
T Consensus 260 ~~lggli~g~l~~~~p~~~G~G-------~~~i~~~~~~-----------------------~~~~~~l~~l~l~K~~~t 309 (418)
T PRK01610 260 LALGGLIVGLLSLFTPAVWGNG-------YSVVQSFLTA-----------------------PPLLMLIAGIFLCKLLAV 309 (418)
T ss_pred HHHHHHHHHHHHHHhhHHhCCc-------HHHHHHHHcC-----------------------ChhHHHHHHHHHHHHHHH
Confidence 99999999986 468777653 6666655532 122345666789999999
Q ss_pred HHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHh
Q psy6631 290 IIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMT 368 (704)
Q Consensus 290 ~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElT 368 (704)
++|+|+|.+||+|+|++++||++|.++|.+++.++|+. ...+..|+++||+|++++++| |++++++++|||
T Consensus 310 ~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~--------~~~~~~~a~vGmaA~laa~~~aPltaivl~~Elt 381 (418)
T PRK01610 310 LASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGLWLPDG--------EEITLLLGLTGMATLLAATTHAPIMSTLMICEMT 381 (418)
T ss_pred HHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCc--------ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999888753 235789999999999999999 899999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHhhc-CCChHHHHHHHh
Q psy6631 369 GQITHIIPVMIAVLISNAVAALL-QPSLYDSIILIK 403 (704)
Q Consensus 369 G~~~~~lPimia~~is~~va~~l-~~siy~~~l~~r 403 (704)
|++++++|+|+++++||++++.+ ++|+|+.++..+
T Consensus 382 g~~~~~~p~~ia~~ia~~vs~~~~~~siy~~~~~~~ 417 (418)
T PRK01610 382 GEYQLLPGLLIACVIASVISRTLRRDSIYRQHTAEH 417 (418)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHhCCCCchHHHHhcc
Confidence 99999999999999999999988 579999998765
|
|
| >PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=369.78 Aligned_cols=283 Identities=28% Similarity=0.395 Sum_probs=223.3
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeeccccchHHHHHHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGA 131 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~ 131 (704)
|+|+.+++.++|++. .. +++..| . +- .+|+|||+||+|||||+|++|++|++.++++.+.++++++||++|+
T Consensus 66 ~iga~i~~~~~~~~~----~~-~~~~~r-~-l~-~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~ 137 (355)
T PF00654_consen 66 QIGAAIGSWLGRRFR----LS-RNETRR-L-LL-AAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVAT 137 (355)
T ss_dssp HHHHHHHHHHHHHTT-------CHHHHH-H-HH-HHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc----cc-chHHHh-H-HH-HHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHH
Confidence 999999999998873 22 111112 2 22 2589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccccc-cccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhH
Q psy6631 132 TVFRLLAVWFYNEETMRAFFP-TNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFL 210 (704)
Q Consensus 132 ~v~~~l~~~~~~~~~~~~~F~-~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l 210 (704)
++++.+.+ .++ .|. ++. ..++++.|+++++++|++||++|.+|++..++..+++++. + +++.++++
T Consensus 138 ~v~~~~~~----~~~---~f~~~~~--~~~~~~~~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~---~-~~~~~~~l 204 (355)
T PF00654_consen 138 LVSRLLFG----NHP---IFGSVPQ--LFPFSLWELPLFLLLGIICGLLGALFNRLLRWLRKFFRKL---K-RLKIPPIL 204 (355)
T ss_dssp HHHHHHHT----SS----SS---TT-------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-TTCHHHHH
T ss_pred HHHHHHcC----cCc---ccccccc--cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c-ccccchHH
Confidence 99999854 232 354 321 2357889999999999999999999999999987665532 2 23445677
Q ss_pred HHHHHHHHHHHHH--hhh--hhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHH
Q psy6631 211 YPGIVVLLATSVS--FPL--GLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTY 286 (704)
Q Consensus 211 ~p~l~gllvg~l~--fP~--~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~ 286 (704)
++++++++++++. +|+ .+|. +++.++.+|++.. .......++.+++.|+
T Consensus 205 ~~~i~gl~~g~l~~~~p~~~~~g~-------G~~~i~~ll~~~~--------------------~~~~~~~l~~~~~~K~ 257 (355)
T PF00654_consen 205 RPVIGGLVIGLLAFFFPEGSVLGS-------GYELIQSLLSGSP--------------------PWFSLGSLLLLFLLKF 257 (355)
T ss_dssp HHHHHHHHHHHHHHSSGG-SGSSS-------STTHHHHHCTT------------------------S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccCC-------cHHHHHHHHcCCc--------------------chhhHHHHHHHHHHHH
Confidence 9999999999875 465 5554 3678888876421 1234668889999999
Q ss_pred HHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHH
Q psy6631 287 IFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMF 365 (704)
Q Consensus 287 ~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ 365 (704)
++|++|+++|+|||+|+|+|+|||++|+++|.+++..+|+.. ..+|..|+++||+|++++++| |++++++++
T Consensus 258 ~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~~~~~~~-------~~~~~~~al~G~~a~~~a~~~~Plt~~vl~~ 330 (355)
T PF00654_consen 258 LATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGSFFPGIS-------SVDPGVYALVGMAAFLAAVTRAPLTAIVLVL 330 (355)
T ss_dssp HHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHHH-GGG--------T-SHHHHHHHHTTHHHHHHCS-HHHHHHHHH
T ss_pred HHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHhhCCCcC-------CCchHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999988532 237999999999999999999 899999999
Q ss_pred HHhCCchhHHHHHHHHHHHHHHHh
Q psy6631 366 EMTGQITHIIPVMIAVLISNAVAA 389 (704)
Q Consensus 366 ElTG~~~~~lPimia~~is~~va~ 389 (704)
|+||++++++|+|+++++||.+++
T Consensus 331 Eltg~~~~~~p~lia~~~a~~v~~ 354 (355)
T PF00654_consen 331 ELTGDFQLLLPLLIAVAVAYLVAR 354 (355)
T ss_dssp HHH--GGGHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999986
|
; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A .... |
| >cd01031 EriC ClC chloride channel EriC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=369.39 Aligned_cols=288 Identities=21% Similarity=0.276 Sum_probs=237.5
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeeccccchHHHHHHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGA 131 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~ 131 (704)
|+|+++++.+++++.. .. . .++. +- .+|+|||++++||||++|++|++|++.++++.+.+++++++|++|+
T Consensus 111 ~iga~ig~~~~~~~~~----~~-~--~~~~-l~-~~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~ 181 (402)
T cd01031 111 QIGAAIGQGVSKWFKT----SP-E--ERRQ-LI-AAGAAAGLAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAAD 181 (402)
T ss_pred HHHHHHHHHHHHHhcC----CH-H--HHHH-HH-HHHHHHhHHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 9999999999987631 10 1 1111 11 3589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHH
Q psy6631 132 TVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLY 211 (704)
Q Consensus 132 ~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~ 211 (704)
++++.+.+ +++ .|..+. ...++..|+++++++|++||++|.+|++..++..+++++ +.+.+++++
T Consensus 182 ~v~~~~~~----~~~---~~~~~~--~~~~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~------~~~~~~~~~ 246 (402)
T cd01031 182 FVSRLFFG----LGP---VLSIPP--LPALPLKSYWLLLLLGIIAGLLGYLFNRSLLKSQDLYRK------LKKLPRELR 246 (402)
T ss_pred HHHHHHcC----CCc---eEecCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cccCChhHH
Confidence 99997632 332 344321 224678999999999999999999999998877654432 124567889
Q ss_pred HHHHHHHHHHH--HhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHH
Q psy6631 212 PGIVVLLATSV--SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFS 289 (704)
Q Consensus 212 p~l~gllvg~l--~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t 289 (704)
+.+++++++++ ++|+..|.+ ++.++.++++ ...+..++.+++.|+++|
T Consensus 247 ~~l~gl~~~~~~~~~p~~~g~G-------~~~i~~~~~~-----------------------~~~~~~l~~~~~~K~~~t 296 (402)
T cd01031 247 VLLPGLLIGPLGLLLPEALGGG-------HGLILSLAGG-----------------------NFSISLLLLIFVLRFIFT 296 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHcC-----------------------CchHHHHHHHHHHHHHHH
Confidence 99999999876 458777653 6666666532 123456677889999999
Q ss_pred HHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHh
Q psy6631 290 IIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMT 368 (704)
Q Consensus 290 ~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElT 368 (704)
++|+|+|.+||+|+|++++||++|+++|.+++.++|.. ..+|+.|+++||+|++++++| |++++++++|+|
T Consensus 297 ~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~--------~~~~~~~a~~G~aa~~a~~~~aPlta~vl~~Elt 368 (402)
T cd01031 297 MLSYGSGAPGGIFAPMLALGALLGLLFGTILVQLGPIP--------ISAPATFAIAGMAAFFAAVVRAPITAIILVTEMT 368 (402)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcc--------cccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 99999999999999999999999999999999988853 368999999999999999999 799999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHhhc-CCChHHHHHH
Q psy6631 369 GQITHIIPVMIAVLISNAVAALL-QPSLYDSIIL 401 (704)
Q Consensus 369 G~~~~~lPimia~~is~~va~~l-~~siy~~~l~ 401 (704)
|++++++|+|+++++||++++.+ ++|+||.++|
T Consensus 369 g~~~~l~p~~ia~~ia~~v~~~~~~~siY~~~l~ 402 (402)
T cd01031 369 GNFNLLLPLMVVCLVAYLVADLLGGKPIYEALLE 402 (402)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHhCCCChhHHHhC
Confidence 99999999999999999999998 5799999874
|
This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter. |
| >cd01033 ClC_like Putative ClC chloride channel | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=358.88 Aligned_cols=274 Identities=20% Similarity=0.220 Sum_probs=224.3
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeeccccchHHHHHHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGA 131 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~ 131 (704)
|+|+++++.+++++. . . ++ .|+ .+- .||+|||+||+|||||+|++|++|+++++++.+.++++++||++|+
T Consensus 110 ~iGa~i~~~~~~~~~-~---~--~~-~~r-~li-~~GaaAGlaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~ 180 (388)
T cd01033 110 EVGALLAQRFSDWLG-L---T--VA-DRR-LLV-ACAAGAGLAAVYNVPLAGALFALEILLRTISLRSVVAALATSAIAA 180 (388)
T ss_pred HHHHHHHHHHHHHhC-C---C--HH-HHH-HHH-HHHHHHHHHHHhCCchHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 999999999998874 1 1 11 111 121 3699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHH
Q psy6631 132 TVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLY 211 (704)
Q Consensus 132 ~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~ 211 (704)
++++.+. +.++ .|..+ ..++++.++++++++|++||++|.+|++.+++..+++++ .++++++
T Consensus 181 ~v~~~~~----g~~~---~f~~~---~~~~~~~~l~~~illGi~~Gl~~~lf~~~~~~~~~~~~~--------~~~~~~~ 242 (388)
T cd01033 181 AVASLLK----GDHP---IYDIP---PMQLSTPLLIWALLAGPVLGVVAAGFRRLSQAARAKRPK--------GKRILWQ 242 (388)
T ss_pred HHHHHhC----CCCc---eeecC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------ccchHHH
Confidence 9999873 2343 45433 123457899999999999999999999998877643221 1234567
Q ss_pred HHHHHHHHHHH--HhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHH
Q psy6631 212 PGIVVLLATSV--SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFS 289 (704)
Q Consensus 212 p~l~gllvg~l--~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t 289 (704)
+.+++++++++ ++|+..|.+ ++.++.++++ ......++.++++|+++|
T Consensus 243 ~~l~gl~~g~~~~~~p~~~G~G-------~~~i~~~~~~-----------------------~~~~~~ll~~~~~K~~~t 292 (388)
T cd01033 243 MPLAFLVIGLLSIFFPQILGNG-------RALAQLAFST-----------------------TLTLSLLLILLVLKIVAT 292 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc-------HHHHHHHHcC-----------------------CchHHHHHHHHHHHHHHH
Confidence 88888888875 568777653 6777766653 122345667789999999
Q ss_pred HHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHh
Q psy6631 290 IIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMT 368 (704)
Q Consensus 290 ~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElT 368 (704)
++|+|+|.+||.|.|++++||++|+++|.+++.++|+ .++..|+++||+|++++++| |++++++++|+|
T Consensus 293 ~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~p~----------~~~~~~a~~GmaA~laa~~~aPlt~ivl~~Elt 362 (388)
T cd01033 293 LLALRAGAYGGLLTPSLALGALLGALLGIVWNALLPP----------LSIAAFALIGAAAFLAATQKAPLTALILVLEFT 362 (388)
T ss_pred HHHHccCCCccchHHHHHHHHHHHHHHHHHHHHhCCc----------ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999887764 46889999999999999998 899999999999
Q ss_pred C-CchhHHHHHHHHHHHHHHHhhcC
Q psy6631 369 G-QITHIIPVMIAVLISNAVAALLQ 392 (704)
Q Consensus 369 G-~~~~~lPimia~~is~~va~~l~ 392 (704)
| +++.++|+|+++++||.+++.++
T Consensus 363 g~~~~~l~Pl~ia~~~a~~vs~~~~ 387 (388)
T cd01033 363 RQNPLFLIPLMLAVAGAVAVSRFIL 387 (388)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9 99999999999999999998664
|
Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. |
| >COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=360.24 Aligned_cols=292 Identities=23% Similarity=0.315 Sum_probs=234.9
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeeccc-cchHHHHHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVY-FAIRNYWRGFFTAVCG 130 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~-~~~~~~~~~f~aav~a 130 (704)
|+|+.+++.+++++. ... ++ + ..+- .+|+|||+||+|||||+|++|++|++.+. ++.++++|+++||++|
T Consensus 138 qiga~~g~~~~~~l~-~~~----~~-~--r~Ll-~~GaAaGlaaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va 208 (443)
T COG0038 138 QIGAAIGSLLGRLLK-LSR----ED-R--RILL-AAGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVA 208 (443)
T ss_pred HHHHHHHHHHHHHhC-CCH----HH-H--HHHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 899998888888774 110 11 1 1111 25899999999999999999999999977 9999999999999999
Q ss_pred HHHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhH
Q psy6631 131 ATVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFL 210 (704)
Q Consensus 131 ~~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l 210 (704)
+.+.+.+.+ ++. .+.+.. ...+++++++.|+++|+++|++|.+|.+.......++ ++.+.++++
T Consensus 209 ~~v~~~~~~----~~~---~~~~~~--~~~~~~~~~~~~~~lGii~G~~g~~~~~~~~~~~~~~-------~~~~~~~~~ 272 (443)
T COG0038 209 LLVAGLFGG----PHF---LLPIVT--TPHMSLWDLLLYLVLGIIAGLFGVLLSRLLALSRRFF-------RRLPLPPLL 272 (443)
T ss_pred HHHHHHcCC----CCc---eeeccc--cCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCcchHHH
Confidence 999998642 232 233222 1235689999999999999999999999886553322 234556889
Q ss_pred HHHHHHHHHHHH--HhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHH
Q psy6631 211 YPGIVVLLATSV--SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIF 288 (704)
Q Consensus 211 ~p~l~gllvg~l--~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~ 288 (704)
++++++++++++ .+|..+|.+ +..++..+++ ......++.+++.|+++
T Consensus 273 ~~~~~g~l~g~~~l~~P~~lg~G-------~~~~~~~~~~-----------------------~~~~~~l~~l~~~K~l~ 322 (443)
T COG0038 273 RPALGGLLVGALGLLFPEVLGNG-------YGLIQLALAG-----------------------EGGLLVLLLLFLLKLLA 322 (443)
T ss_pred HHHHHHHHHHHHHHhchhhhCCC-------ccHHHHHHcc-----------------------CccHHHHHHHHHHHHHH
Confidence 999999999976 578888764 4444434322 11111166788999999
Q ss_pred HHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHH
Q psy6631 289 SIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEM 367 (704)
Q Consensus 289 t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~El 367 (704)
|.+|+|+|.|||+|+|++++||++|.++|.+++.++|.. ...+..|+++||+|++++++| |++++++++||
T Consensus 323 t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~~~~~~~--------~~~~~~~al~Gm~a~la~~~~aPlta~vlv~Em 394 (443)
T COG0038 323 TLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGLLFPPS--------ILEPGLFALLGMAAFLAATTRAPLTAIVLVLEM 394 (443)
T ss_pred HHHHHhcCCCcceehHHHHHHHHHHHHHHHHHHhhcCcc--------ccchHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 999999999999999999999999999999999998863 247889999999999999998 89999999999
Q ss_pred hCCchhHHHHHHHHHHHHHHHhhcC-CChHHHHHHHhcCC
Q psy6631 368 TGQITHIIPVMIAVLISNAVAALLQ-PSLYDSIILIKKLP 406 (704)
Q Consensus 368 TG~~~~~lPimia~~is~~va~~l~-~siy~~~l~~r~~p 406 (704)
||+++.++|+|+++++||.+++.+. +++|++.+++++.+
T Consensus 395 Tg~~~~~l~ll~a~~ia~~~~~~~~~~~~~~~~~~~~~~~ 434 (443)
T COG0038 395 TGNYQLLLPLLIACLIAYLVSRLLGGRPIYTQLLARRGAP 434 (443)
T ss_pred hCCcchHHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcCch
Confidence 9999999999999999999999875 69999999998765
|
|
| >PRK05277 chloride channel protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=358.50 Aligned_cols=294 Identities=19% Similarity=0.242 Sum_probs=231.5
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeeccc--cchHHHHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVY--FAIRNYWRGFFTAVC 129 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~--~~~~~~~~~f~aav~ 129 (704)
|+|+++++.+++++.. .. .. .++. +- .+|+|||+||+||||++|++|++|++.++ ++.++++++++++++
T Consensus 118 ~iGa~ig~~~~~~~~~---~~--~~-~~~~-li-~~G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~ 189 (438)
T PRK05277 118 QMGGNIGRMVLDIFRL---RS--DE-ARHT-LL-AAGAAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIM 189 (438)
T ss_pred HHHHHHHHHHHHHccc---CC--HH-HHHH-HH-HHHHHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 9999999999987731 01 11 1111 21 26899999999999999999999999874 477889999999999
Q ss_pred HHHHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchh
Q psy6631 130 GATVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRF 209 (704)
Q Consensus 130 a~~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~ 209 (704)
|+++++++.. .++ .|..+.. + .++..++++++++|++||++|.+|+++..+..+++++.+ +....+++
T Consensus 190 a~~v~~~~~g----~~~---~~~~~~~-~-~~~~~~l~~~i~lGi~~G~~g~lf~~~~~~~~~~~~~~~---~~~~~~~~ 257 (438)
T PRK05277 190 ATIVFRLFNG----EQA---VIEVGKF-S-APPLNTLWLFLLLGIIFGIFGVLFNKLLLRTQDLFDRLH---GGNKKRWV 257 (438)
T ss_pred HHHHHHHhcC----CCc---eEeccCC-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccccHHHH
Confidence 9999998742 232 3443211 1 245789999999999999999999999888765544211 11111223
Q ss_pred HHHHHHHHHHHHH--HhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHH
Q psy6631 210 LYPGIVVLLATSV--SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYI 287 (704)
Q Consensus 210 l~p~l~gllvg~l--~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~ 287 (704)
+...+++++++.+ ++|...|.+ ++.+.+++++ ...+..++.++++|++
T Consensus 258 ~~~~i~gl~~g~l~~~~p~~~g~G-------~~~i~~~~~~-----------------------~~~~~~l~~~~~~K~i 307 (438)
T PRK05277 258 LMGGAVGGLCGLLGLLAPAAVGGG-------FNLIPIALAG-----------------------NFSIGMLLFIFVARFI 307 (438)
T ss_pred HHHHHHHHHHHHHHHHhhhhcCCh-------HHHHHHHHcC-----------------------CchHHHHHHHHHHHHH
Confidence 3456777777765 467766653 6777655532 1234456678899999
Q ss_pred HHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHH
Q psy6631 288 FSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFE 366 (704)
Q Consensus 288 ~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~E 366 (704)
+|++|+|+|.+||.|.|++++||++|+++|.+++.++|.. ..+|..|+++||+|++++++| |++++++++|
T Consensus 308 ~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~p~~--------~~~~~~~a~~G~aA~la~~~~aPlt~~v~~~E 379 (438)
T PRK05277 308 TTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAALFPQY--------HIEPGTFAIAGMGALFAATVRAPLTGIVLVLE 379 (438)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCcc--------cccHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999998863 368999999999999999988 8999999999
Q ss_pred HhCCchhHHHHHHHHHHHHHHHhhcC-CChHHHHHHHh
Q psy6631 367 MTGQITHIIPVMIAVLISNAVAALLQ-PSLYDSIILIK 403 (704)
Q Consensus 367 lTG~~~~~lPimia~~is~~va~~l~-~siy~~~l~~r 403 (704)
+||++++++|+|+++++||++++.++ +++||.++++.
T Consensus 380 ltg~~~~l~p~lia~~~A~~v~~~~~~~~iy~~~l~~~ 417 (438)
T PRK05277 380 MTDNYQLILPLIITCLGATLLAQFLGGKPIYSALLERT 417 (438)
T ss_pred HhCChhhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999999999985 79999998876
|
|
| >cd01034 EriC_like ClC chloride channel family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=352.52 Aligned_cols=281 Identities=17% Similarity=0.218 Sum_probs=219.9
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeeccccchHHHHHHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGA 131 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~ 131 (704)
|+|+++++.+++++. ... +. .++. +- .||+|||+||+|||||+|++|++||+.++++.+.++++++++++|+
T Consensus 105 ~iga~i~~~~~~~~~-~~~----~~-~~r~-li-~~GaaAGlaa~F~aPlaG~lF~~E~~~~~~~~~~~~~~~~~~~~a~ 176 (390)
T cd01034 105 QIGAAVMLAIGRRLP-KWG----GL-SERG-LI-LAGGAAGLAAAFNTPLAGIVFAIEELSRDFELRFSGLVLLAVIAAG 176 (390)
T ss_pred HHHHHHHHHHHHHcc-cCc----hH-HHHH-HH-HHHHHHhHHHHhCCcchhHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999998874 110 01 1111 22 3699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHH
Q psy6631 132 TVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLY 211 (704)
Q Consensus 132 ~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~ 211 (704)
++.+.+. + .++ .|..+... .++..++++++++|++||++|.+|++...+..+++++.+ +++.+.+++++
T Consensus 177 ~~~~~~~---g-~~~---~f~~~~~~--~~~~~~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~--~~~~~~~~~~~ 245 (390)
T cd01034 177 LVSLAVL---G-NYP---YFGVAAVA--LPLGEAWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWV--RRFRRRRPVLF 245 (390)
T ss_pred HHHHHHc---C-CCC---ccCCCCCC--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcccchhhHHH
Confidence 9988763 2 333 45443211 246788999999999999999999999988776544321 12234456677
Q ss_pred HHHHHHHHHHHHh--h-hhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHH
Q psy6631 212 PGIVVLLATSVSF--P-LGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIF 288 (704)
Q Consensus 212 p~l~gllvg~l~f--P-~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~ 288 (704)
+.+++++++++.+ | ..+|. +++.+++++++. .. ....++++|+++
T Consensus 246 ~~~~gl~~~~~~~~~~~~~~G~-------G~~~i~~~~~~~---------------------~~----~~~~~~l~K~i~ 293 (390)
T cd01034 246 AALCGLALALIGLVSGGLTFGT-------GYLQARAALEGG---------------------GG----LPLWFGLLKFLA 293 (390)
T ss_pred HHHHHHHHHHHHHhCCCccccC-------cHHHHHHHHhCC---------------------Cc----ccHHHHHHHHHH
Confidence 7888888876643 3 33333 367776665431 00 112457899999
Q ss_pred HHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHH
Q psy6631 289 SIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEM 367 (704)
Q Consensus 289 t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~El 367 (704)
|++|+++|.|||.|.|++++||++|++++.++. . .+|..|+++||+|++++++| |++++++++|+
T Consensus 294 t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~~~----~----------~~~~~~a~~G~aA~laa~~~aPlt~~vl~~El 359 (390)
T cd01034 294 TLLSYWSGIPGGLFAPSLAVGAGLGSLLAALLG----S----------VSQGALVLLGMAAFLAGVTQAPLTAFVIVMEM 359 (390)
T ss_pred HHHHHHcCCCcceechHHHHHHHHHHHHHHHhc----C----------CCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 999999999999999999999999999998642 1 37889999999999999999 89999999999
Q ss_pred hCCchhHHHHHHHHHHHHHHHhhcC-CChHH
Q psy6631 368 TGQITHIIPVMIAVLISNAVAALLQ-PSLYD 397 (704)
Q Consensus 368 TG~~~~~lPimia~~is~~va~~l~-~siy~ 397 (704)
||++++++|+|+++++||++++.++ +|+||
T Consensus 360 t~~~~~l~p~lia~~~A~~v~~~~~~~~iY~ 390 (390)
T cd01034 360 TGDQQMLLPLLAAALLASGVSRLVCPEPLYH 390 (390)
T ss_pred hCChhhHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999885 68885
|
These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. |
| >cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=326.98 Aligned_cols=271 Identities=24% Similarity=0.326 Sum_probs=221.8
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeeccccchHHHHHHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGA 131 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~ 131 (704)
|+|+++++.+++++.. . .. .++. +- .+|+|||+||+||||++|++|++|++.++++.+.++++++++++|+
T Consensus 110 ~iGa~~g~~~~~~~~~----~--~~-~~~~-l~-~~G~aaglaa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~ 180 (383)
T cd00400 110 QIGAAIGSWLGRRLRL----S--RN-DRRI-LV-ACGAAAGIAAAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAA 180 (383)
T ss_pred HHHHHHHHHHHHHhCC----C--HH-HHHH-HH-HHHHHHHHHHhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999999999987731 1 01 0111 11 2589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHH
Q psy6631 132 TVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLY 211 (704)
Q Consensus 132 ~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~ 211 (704)
++++.+.. .+. .|..+. ..+++..++++++++|++||++|.+|++.+++..+++++ .+.+++++
T Consensus 181 ~v~~~~~~----~~~---~~~~~~--~~~~~~~~~~~~il~Gv~~g~~g~~f~~~~~~~~~~~~~-------~~~~~~~~ 244 (383)
T cd00400 181 LVSRLLFG----AEP---AFGVPL--YDPLSLLELPLYLLLGLLAGLVGVLFVRLLYKIERLFRR-------LPIPPWLR 244 (383)
T ss_pred HHHHHHcC----CCC---eeeCCC--CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cCCcHHHH
Confidence 99998743 232 454432 245788999999999999999999999999887654332 24567889
Q ss_pred HHHHHHHHHHH--HhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHH
Q psy6631 212 PGIVVLLATSV--SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFS 289 (704)
Q Consensus 212 p~l~gllvg~l--~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t 289 (704)
+++++++++.+ ++|+..|.+ ++.++..+++ ......++.+++.|+++|
T Consensus 245 ~~i~gll~~~~~~~~p~~~g~G-------~~~~~~~~~~-----------------------~~~~~~l~~~~~~K~~~t 294 (383)
T cd00400 245 PALGGLLLGLLGLFLPQVLGSG-------YGAILLALAG-----------------------ELSLLLLLLLLLLKLLAT 294 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHcCc-------HHHHHHHHcC-----------------------ChhHHHHHHHHHHHHHHH
Confidence 99999998876 458777653 5555444321 223445667889999999
Q ss_pred HHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHh
Q psy6631 290 IIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMT 368 (704)
Q Consensus 290 ~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElT 368 (704)
++|+++|+|||.|.|++++||++|+++|.++..++|.. +.+|..|+++||+|++++++| |++++++++|+|
T Consensus 295 ~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~~~~~~~~--------~~~~~~~~~~G~aa~la~~~~aPlt~~vl~~Elt 366 (383)
T cd00400 295 ALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPALFPGL--------VASPGAYALVGMAALLAAVLRAPLTAILLVLELT 366 (383)
T ss_pred HHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCcc--------cCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHh
Confidence 99999999999999999999999999999999988742 468999999999999999998 899999999999
Q ss_pred CCchhHHHHHHHHHHHH
Q psy6631 369 GQITHIIPVMIAVLISN 385 (704)
Q Consensus 369 G~~~~~lPimia~~is~ 385 (704)
|+++.++|+|+++++||
T Consensus 367 g~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 367 GDYSLLLPLMLAVVIAY 383 (383)
T ss_pred CChhhHHHHHHHHHhcC
Confidence 99999999999999986
|
The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore |
| >cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=319.01 Aligned_cols=273 Identities=18% Similarity=0.233 Sum_probs=211.7
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeec-cccchHHHHHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTT-VYFAIRNYWRGFFTAVCG 130 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~-~~~~~~~~~~~f~aav~a 130 (704)
|+|++++.++++++.. . .+ .++. + ..+|+|||++|+||||++|++|++|++. ++++.+.+++++++|+++
T Consensus 103 ~~ga~~~~~~~~~~~~----~--~~-~~r~-l-~~~g~aAglaa~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a 173 (378)
T cd03682 103 QMGGSLADAFGRVFKL----P--EE-DRRI-L-LIAGIAAGFAAVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVA 173 (378)
T ss_pred HHHHHHHHHHHHHhCC----C--HH-HHHH-H-HHHHHHHHHHHHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999999987631 1 11 1111 2 1368999999999999999999999996 788999999999999999
Q ss_pred HHHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhH
Q psy6631 131 ATVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFL 210 (704)
Q Consensus 131 ~~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l 210 (704)
+.+++.+. ..++ .|..+. ..+++..++++++++|++||++|.+|+++.++..+++++ ...++++
T Consensus 174 ~~v~~~~~----~~~~---~~~~~~--~~~~~~~~l~~~i~~Gi~~gl~g~~f~~~~~~~~~~~~~-------~~~~~~~ 237 (378)
T cd03682 174 DWVSHALG----LEHT---HYHIVF--IPTLDPLLFVKVILAGIIFGLAGRLFAELLHFLKKLLKK-------RIKNPYL 237 (378)
T ss_pred HHHHHHhC----CCCC---ccccCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccCCcHH
Confidence 99988753 2222 243322 234678899999999999999999999999887655442 2345788
Q ss_pred HHHHHHHHHHHHHhhhhhccccCCCCCcHHHHHH-hhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHH
Q psy6631 211 YPGIVVLLATSVSFPLGLGKYMAGDLNTHDQLSS-LFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFS 289 (704)
Q Consensus 211 ~p~l~gllvg~l~fP~~~G~~~~g~l~~~~~i~~-lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t 289 (704)
++++++++++++.+..+...+.+ .+++.++. ++++ +.. ...++.|+++|
T Consensus 238 ~~~iggl~~g~~~~~~~~~~~~G---~g~~~i~~~~~~~-----------------------~~~----~~~~l~K~~~t 287 (378)
T cd03682 238 RPFVGGLLIILLVYLLGSRRYLG---LGTPLIEDSFFGG-----------------------TVY----PYDWLLKLIFT 287 (378)
T ss_pred HHHHHHHHHHHHHHHhcCCcccc---CCHHHHHHHHhcC-----------------------Cch----HHHHHHHHHHH
Confidence 99999999998754322222211 12455544 3221 111 12358999999
Q ss_pred HHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHh
Q psy6631 290 IIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMT 368 (704)
Q Consensus 290 ~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElT 368 (704)
++|+|+|.|||+|+|++++||++|+++|.+++ .++..|+++||+|++++++| |++++++++|||
T Consensus 288 ~~s~g~G~~GG~f~P~l~iGa~~G~~~~~~~~---------------~~~~~~~~~Gmaa~laa~~raPlt~ivl~~Elt 352 (378)
T cd03682 288 VITLGAGFKGGEVTPLFFIGATLGNALAPILG---------------LPVSLLAALGFVAVFAGATNTPLACIIMGIELF 352 (378)
T ss_pred HHHHhcCCCCceechHHHHHHHHHHHHHHHHC---------------CCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 99999999999999999999999999998752 35789999999999999998 899999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHhhcCCChHH
Q psy6631 369 GQITHIIPVMIAVLISNAVAALLQPSLYD 397 (704)
Q Consensus 369 G~~~~~lPimia~~is~~va~~l~~siy~ 397 (704)
| ++.++|+|+++++||.+++ ++|+|+
T Consensus 353 g-~~~~~p~~ia~~ia~~~~~--~~~iy~ 378 (378)
T cd03682 353 G-AENAPYFFIACLVAYLFSG--HTGIYG 378 (378)
T ss_pred C-ccchHHHHHHHHHHHHHhC--CCCCCC
Confidence 9 5778899999999999997 678884
|
This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. |
| >PRK03655 putative ion channel protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-32 Score=298.78 Aligned_cols=263 Identities=14% Similarity=0.173 Sum_probs=194.9
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeeccccchH---HHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYFAIR---NYWRGFFTAV 128 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~~~~---~~~~~f~aav 128 (704)
|+|+.+++.+++++. .. . + + ..+. .+|+|||+||+||||++|++|++||+.+++..+ ...+.+++++
T Consensus 125 qiGa~igs~~~r~~~--~~-~--~---~-~~l~-~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~~~~~~~~v~aa~ 194 (414)
T PRK03655 125 TVNIALAVAIGARLL--PR-V--N---R-MDWT-ILASAGTIGALFGTPVAAALIFSQTLNGSNEVPLWDRLFAPLMAAA 194 (414)
T ss_pred HHHHHHHHHHHHHhc--cC-C--C---h-hHHH-HHHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 999999999997662 11 1 1 0 1111 268899999999999999999999999887752 3455667777
Q ss_pred HHHHHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcch
Q psy6631 129 CGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNR 208 (704)
Q Consensus 129 ~a~~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~ 208 (704)
+++.+.+.+. + . .|..++......+..++++++++|++||++|.+|++..++..++++ .++. +
T Consensus 195 ~a~~v~~~~~----~-~----~~~~~~~~~~~~~~~~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~~-------~~~~-p 257 (414)
T PRK03655 195 AGALTTGLFF----H-P----HFSLPIAHYGQMEMTDILSGAIVAAIAIAAGMVAVWCLPRLHALMH-------RLKN-P 257 (414)
T ss_pred HHHHHHHHhC----C-C----CcceecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hccc-c
Confidence 8888777652 1 1 2321211112246789999999999999999999988776543322 1233 4
Q ss_pred hHHHHHHHHHHHHHHh---hhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHH
Q psy6631 209 FLYPGIVVLLATSVSF---PLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYT 285 (704)
Q Consensus 209 ~l~p~l~gllvg~l~f---P~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K 285 (704)
+++++++|++++.+.+ |+.+|. +|+.+.++..+ ++.....+++++++|
T Consensus 258 ~~~~~lgGl~vg~l~l~~~~~~~g~-------Gy~~i~~~~~~----------------------~~~~~~~ll~l~l~K 308 (414)
T PRK03655 258 VLVLGIGGFILGILGVIGGPLTLFK-------GLDEMQQMAAN----------------------QAFSASDYFLLAVVK 308 (414)
T ss_pred hHHHHHHHHHHHHHHHHhCCccccC-------CHHHHHHHHhc----------------------CCccHHHHHHHHHHH
Confidence 5678889999987643 444444 36666554422 123355677788999
Q ss_pred HHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-----hhHH
Q psy6631 286 YIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-----TISV 360 (704)
Q Consensus 286 ~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-----~is~ 360 (704)
+++|++|+++|+|||+|+|+|++||++|.+++.+ +|. .++...+++||+|++++++| |+|+
T Consensus 309 ~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l----~p~----------~~~~~~v~~~m~a~la~vtr~p~~sp~ta 374 (414)
T PRK03655 309 LAALVVAAASGFRGGRIFPAVFVGVALGLMLHAH----VPA----------VPAAITVSCAILGIVLVVTRDGWLSLFMA 374 (414)
T ss_pred HHHHHHHHccCCCCceehHHHHHHHHHHHHHHHh----ccC----------CChHHHHHHHHHHHHHHHhccchhhHHHH
Confidence 9999999999999999999999999999888776 443 36788899999999999998 8999
Q ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHh
Q psy6631 361 SVIMFEMTGQITHIIPVMIAVLISNAVAA 389 (704)
Q Consensus 361 ~viv~ElTG~~~~~lPimia~~is~~va~ 389 (704)
++|+.||| ++|+|++++++-++.-
T Consensus 375 ~viv~em~-----~~~l~~~~~~~~~~~~ 398 (414)
T PRK03655 375 AVVVPDTT-----LLPLLCIVMLPAWLLL 398 (414)
T ss_pred HHHHhcch-----HHHHHHHHHHHHHHHH
Confidence 99999999 8899999988766553
|
|
| >PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=158.84 Aligned_cols=184 Identities=15% Similarity=0.133 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHhhhcch----hHHHHHHHHHHHHHHh---hhhhccccCCCC
Q psy6631 165 ELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNK-KMNAFLQKNR----FLYPGIVVLLATSVSF---PLGLGKYMAGDL 236 (704)
Q Consensus 165 el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~-~~~~~l~~~~----~l~p~l~gllvg~l~f---P~~~G~~~~g~l 236 (704)
-+...+++|++.|+++.+|.+...+...++.... .........+ ++-|+++|++++.+.+ +..-++
T Consensus 24 ~~~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ggli~~~~~~~~~~~~~~~------ 97 (574)
T PRK01862 24 MLIWSAIVGIGGAFATTAFREGIELIQHLISGHSGSFVEMAKSLPWYVRVWLPAAGGFLAGCVLLLANRGARKG------ 97 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccccccC------
Confidence 4566799999999999999999888776543210 0001111122 3335566666665532 222111
Q ss_pred CcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHH
Q psy6631 237 NTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMI 316 (704)
Q Consensus 237 ~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~ 316 (704)
+..+.+.....+. +..++. ....|++.+.+|.|+|.+.|--.|+.-+||++|..+
T Consensus 98 g~~~~~~~~~~~~---------------------~~~~~~----~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~ 152 (574)
T PRK01862 98 GKTDYMEAVALGD---------------------GVVPVR----QSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLV 152 (574)
T ss_pred CcHHHHHHHHcCC---------------------CCCChH----HHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHH
Confidence 1234444332210 111121 235699999999999999999999999999999999
Q ss_pred HHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHh-CCc--hhHHHHHHHHHHHHHHHhhc
Q psy6631 317 GEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMT-GQI--THIIPVMIAVLISNAVAALL 391 (704)
Q Consensus 317 G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElT-G~~--~~~lPimia~~is~~va~~l 391 (704)
+..+.. + ...--....+||||=++++.+ |++.++..+|.. +++ ..+.|.++++++|+.+++.+
T Consensus 153 ~~~~~~--~----------~~~~r~l~~~G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~~ 219 (574)
T PRK01862 153 GRFAHF--D----------PPRLRLLVACGAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMREF 219 (574)
T ss_pred HHHhCC--C----------HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 997632 1 112345677899999999988 899999999985 554 56889999999999999875
|
|
| >COG4109 Predicted transcriptional regulator containing CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.9e-15 Score=153.19 Aligned_cols=156 Identities=18% Similarity=0.292 Sum_probs=137.3
Q ss_pred hHHHHHHHHHHHHHHHhhcCCChHHHHHHHhcCCCCCCCCCCCccccccccccccc--cceEEecCCCCHHHHHHHHHhc
Q psy6631 373 HIIPVMIAVLISNAVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMV--RDVKYIWNNMTYRDLKNLLKEN 450 (704)
Q Consensus 373 ~~lPimia~~is~~va~~l~~siy~~~l~~r~~p~l~~~~~~~~~l~~~~V~diM~--~~v~~v~~~~tl~ea~~~l~~~ 450 (704)
.-+|++-++--.+.+|..+++.+|+.+++.. -+.|+|+|+ .+..|+.++++++|+.++-+++
T Consensus 156 ~~lPvlstsYDTFTVAtmIN~Al~n~lIKkd----------------I~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt 219 (432)
T COG4109 156 KGLPVLSTSYDTFTVATMINKALSNQLIKKD----------------IITVEDIMTPLEDTSYLRETDTVEDWLDLVEKT 219 (432)
T ss_pred cCCceEEecccceeHHHHHHHHHHHhhhhhh----------------eeeHHHhccccccceeccccccHHHHHHHHHHc
Confidence 4569998888888888888889999988764 367999999 7899999999999999999998
Q ss_pred CCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCc
Q psy6631 451 RSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLR 530 (704)
Q Consensus 451 ~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~ 530 (704)
+++.|||||.. ++++|+++.+|+.... ++.+++.+|++++.++.+.++++.+++.| -++.+.
T Consensus 220 -~~sRfPVvn~~------------~kvvGvVt~rDv~~~~----~~t~ieKVMtknp~tv~~~tsVAsvaq~M-iwE~ie 281 (432)
T COG4109 220 -GHSRFPVVNRS------------MKVVGVVTMRDVLDKK----PSTTIEKVMTKNPITVRAKTSVASVAQMM-IWEGIE 281 (432)
T ss_pred -CCCccceeccc------------ceEEEEEEehhhhcCC----CCccHHHHhccCCeeecccchHHHHHHHH-Hhccce
Confidence 89999999987 8999999999997554 45688999999999999999999999999 589999
Q ss_pred eeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCC
Q psy6631 531 VFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPH 573 (704)
Q Consensus 531 Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~ 573 (704)
++||++++.. +.|.++|++|+++.+..|+||+
T Consensus 282 m~PVv~~n~~-----------llGiitR~dvlk~lq~~q~qpq 313 (432)
T COG4109 282 MLPVVDSNNT-----------LLGIITRQDVLKSLQMIQRQPQ 313 (432)
T ss_pred eeeEEcCCce-----------EEEEEEHHHHHHHHHHhccCCc
Confidence 9999998655 6688888889998888888763
|
|
| >COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-12 Score=132.93 Aligned_cols=192 Identities=18% Similarity=0.220 Sum_probs=139.3
Q ss_pred hHHHHHHHHHHHHHH-hhhhhHHHH-HHHHHhC------Cch-hHHHHHHHHHHHHHHHhhcCCChHHHHHHHhcCCC--
Q psy6631 339 PGGYATVGAAAFSGA-VTHTISVSV-IMFEMTG------QIT-HIIPVMIAVLISNAVAALLQPSLYDSIILIKKLPY-- 407 (704)
Q Consensus 339 p~~yAlvGmaAf~aa-v~~~is~~v-iv~ElTG------~~~-~~lPimia~~is~~va~~l~~siy~~~l~~r~~p~-- 407 (704)
.+.-...+++++++- ..||.|..+ +..-|+| +|. .+.|+.+.+++-...+-.+ +. +.+|.||-
T Consensus 109 ~~lavsLaI~~M~~~rcLHPPsgAvALtavlgGpav~~~g~~F~l~Pval~SliLv~~a~ly-----nn-l~~r~YPh~~ 182 (382)
T COG3448 109 SGLAVSLAIGAMFALRCLHPPSGAVALTAVLGGPAVHRLGYNFVLWPVALNSLILVGLALLY-----NN-LTRRTYPHHW 182 (382)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHhcCcccccCCCCceehhhhhhhHHHHHHHHHH-----HH-HhcCCCCCcc
Confidence 344455667776654 567888776 4444553 344 5789988888765555433 33 33444432
Q ss_pred ---------CCCCCCCC----------------------------------------ccccccccccccccceEEecCCC
Q psy6631 408 ---------LPDLLPSS----------------------------------------SGIYNVYVEDFMVRDVKYIWNNM 438 (704)
Q Consensus 408 ---------l~~~~~~~----------------------------------------~~l~~~~V~diM~~~v~~v~~~~ 438 (704)
..|.+|+. ..+..++..|||++|++++.+++
T Consensus 183 ~~p~an~HgT~Dppp~~rvgfs~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSrdVvtv~~~t 262 (382)
T COG3448 183 LSPPANLHGTADPPPSQRVGFSSEDLDAALQRLGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSRDVVTVSTDT 262 (382)
T ss_pred CCCcccccCCCCCCchhccCCCHHHHHHHHHhcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCccceecCCcC
Confidence 01111110 12245689999999999999999
Q ss_pred CHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc-------ccccccccccccccCceEEe
Q psy6631 439 TYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS-------SGIYNVYVEDFMVRDVKYIW 511 (704)
Q Consensus 439 tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~-------~~~~~~~V~dvM~~~v~tV~ 511 (704)
++.++.+.+.++ +.+.+||+|++ .+++|+|.+.|+..... ......+|+++|++++.++.
T Consensus 263 s~dhA~~ll~~H-~ikaLPV~d~~------------~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~ 329 (382)
T COG3448 263 SIDHARKLLQEH-RIKALPVLDEH------------RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVR 329 (382)
T ss_pred ChHHHHHHHHHc-Ccccccccccc------------cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeec
Confidence 999999999999 89999999988 79999999999986322 12345789999999999999
Q ss_pred CCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 512 NNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 512 ~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
||++..|+.-.+ ..++...+||+|+ +..+|+++..|+.
T Consensus 330 pdtpa~~lvp~l-ad~g~H~lpvld~~g~lvGIvsQtDli 368 (382)
T COG3448 330 PDTPAVELVPRL-ADEGLHALPVLDAAGKLVGIVSQTDLI 368 (382)
T ss_pred CCCcHHHHHHHh-hcCCcceeeEEcCCCcEEEEeeHHHHH
Confidence 999999999998 5688889999987 4557777666653
|
|
| >COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5e-12 Score=127.76 Aligned_cols=118 Identities=15% Similarity=0.199 Sum_probs=103.6
Q ss_pred ccccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccc
Q psy6631 418 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNV 497 (704)
Q Consensus 418 l~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~ 497 (704)
+.+.+|+++|++++.++.+++|++|+.+.|.++ +.++.||+|++ +++|+++..|+..+...+..+.
T Consensus 169 iPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~-~i~GaPVvd~d-------------k~vGiit~~dI~~aia~g~~~~ 234 (294)
T COG2524 169 IPKEKVKNLMSKKLITVRPDDTLREAAKLFYEK-GIRGAPVVDDD-------------KIVGIITLSDIAKAIANGNLDA 234 (294)
T ss_pred cCcchhhhhccCCceEecCCccHHHHHHHHHHc-CccCCceecCC-------------ceEEEEEHHHHHHHHHcCCccc
Confidence 346789999999999999999999999999999 89999999876 8999999999998888888999
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeeccc-CCCceEEeehHHHh
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE-SSGKFEQMEIKRRE 550 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~-~~~~~~~i~~~~~~ 550 (704)
+|+|+|+++++++.+|+.+.||.++|. ..++..+-|+| +++.+|+++|-|..
T Consensus 235 kV~~~M~k~vitI~eDe~i~dAir~M~-~~nVGRLlV~ds~gkpvGiITrTDIL 287 (294)
T COG2524 235 KVSDYMRKNVITINEDEDIYDAIRLMN-KNNVGRLLVTDSNGKPVGIITRTDIL 287 (294)
T ss_pred cHHHHhccCCceEcCchhHHHHHHHHH-hcCcceEEEEccCCcEEEEEehHHHH
Confidence 999999999999999999999999995 45555566666 56667777776654
|
|
| >cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-10 Score=127.66 Aligned_cols=177 Identities=19% Similarity=0.133 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HhhhcchhHHHHHHHHHHHHHHh--hhhhccccCCCCCcHHHHHHhh
Q psy6631 173 GVVCGFGGAGYVWSHRQYVLFMRRNKKMN----AFLQKNRFLYPGIVVLLATSVSF--PLGLGKYMAGDLNTHDQLSSLF 246 (704)
Q Consensus 173 Gi~~Gl~g~lF~~~~~~~~~~~r~~~~~~----~~l~~~~~l~p~l~gllvg~l~f--P~~~G~~~~g~l~~~~~i~~lf 246 (704)
|+++|+++.+|.++..+..+++.+..... ..-...+++.+++++++++.+.. |...|. +.+++.+..
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~l~~~~~~~~~g~-------G~~~v~~~~ 73 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGELAAGSLSPLYILLVPVIGGLLVGLLVRLLGPARGH-------GIPEVIEAI 73 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHhCcccCC-------ChHHHHHHH
Confidence 68999999999999988776544221000 00011234667777787776643 222232 244443333
Q ss_pred hcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCC
Q psy6631 247 SNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPD 326 (704)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~ 326 (704)
++. . .... .-..+.|++.+.++.++|.++|.+.|++.+||++|..++...+. +
T Consensus 74 ~~~-----------------~---~~~~----~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~~~~--~- 126 (383)
T cd00400 74 ALG-----------------G---GRLP----LRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRRLRL--S- 126 (383)
T ss_pred HhC-----------------C---CCCC----HHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHhCC--C-
Confidence 210 0 0011 13567899999999999999999999999999999999987642 1
Q ss_pred CccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHhCCch---hHHHHHHHHHHHHHHHhhcC
Q psy6631 327 GITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMTGQIT---HIIPVMIAVLISNAVAALLQ 392 (704)
Q Consensus 327 ~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElTG~~~---~~lPimia~~is~~va~~l~ 392 (704)
..+...+..+||+|.++++.+ |++.+++.+|+++... .++|.++++.+|+.+++.+.
T Consensus 127 ---------~~~~~~l~~~G~aaglaa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~~ 187 (383)
T cd00400 127 ---------RNDRRILVACGAAAGIAAAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLLF 187 (383)
T ss_pred ---------HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc
Confidence 135668999999999999998 8999999999998766 78999999999999999764
|
The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore |
| >PRK05277 chloride channel protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.3e-10 Score=127.57 Aligned_cols=182 Identities=16% Similarity=0.165 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh--cchhHHHHHHHHHHHHHH-------hhhhhccccCCCCC
Q psy6631 167 TVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQ--KNRFLYPGIVVLLATSVS-------FPLGLGKYMAGDLN 237 (704)
Q Consensus 167 ~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~--~~~~l~p~l~gllvg~l~-------fP~~~G~~~~g~l~ 237 (704)
.+.+++|+++|+++.+|.+...+...++... ...... ...|..+++++.+.+.+. -|...|.
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~~Gs------- 72 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGL--LASVADNGLLLWIVAFLISAVLAMIGYFLVRRFAPEAGGS------- 72 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC-------
Confidence 5678999999999999999999887654322 111111 122333444444443321 1443343
Q ss_pred cHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHH
Q psy6631 238 THDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIG 317 (704)
Q Consensus 238 ~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G 317 (704)
+.+++...+++.. .... .-....|++.+.++.|+|.++|...|+..+||++|..++
T Consensus 73 Gi~~i~~~l~~~~---------------------~~~~---~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~ 128 (438)
T PRK05277 73 GIPEIEGALEGLR---------------------PVRW---WRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVL 128 (438)
T ss_pred CHHHHHHHHcCCC---------------------ccch---HHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHH
Confidence 2455655554310 0000 113478999999999999999999999999999999999
Q ss_pred HHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHH-HhCC--ch--hHHHHHHHHHHHHHHHhhc
Q psy6631 318 EIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFE-MTGQ--IT--HIIPVMIAVLISNAVAALL 391 (704)
Q Consensus 318 ~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~E-lTG~--~~--~~lPimia~~is~~va~~l 391 (704)
..++... +.+...+..+||||-++++.+ |++.+++.+| +++. ++ .+.|+++++++|+.+.+.+
T Consensus 129 ~~~~~~~-----------~~~~~~li~~G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~ 197 (438)
T PRK05277 129 DIFRLRS-----------DEARHTLLAAGAAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLF 197 (438)
T ss_pred HHcccCC-----------HHHHHHHHHHHHHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence 8764211 124567899999999999998 8999999999 6763 23 4789999999999999876
Q ss_pred C
Q psy6631 392 Q 392 (704)
Q Consensus 392 ~ 392 (704)
.
T Consensus 198 ~ 198 (438)
T PRK05277 198 N 198 (438)
T ss_pred c
Confidence 3
|
|
| >cd01031 EriC ClC chloride channel EriC | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=128.71 Aligned_cols=176 Identities=16% Similarity=0.190 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHH----HHHHHHHHHHH---HhhhhhccccCCCCCcHHHHHH
Q psy6631 172 IGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLY----PGIVVLLATSV---SFPLGLGKYMAGDLNTHDQLSS 244 (704)
Q Consensus 172 lGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~----p~l~gllvg~l---~fP~~~G~~~~g~l~~~~~i~~ 244 (704)
+|+++|+++.+|.+...+...++........ ...+++.. +.+++++++.+ +.|...|.+ .+++.+
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G-------~~~v~~ 72 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAA-NNPPLLLVLPLISAVLGLLAGWLVKKFAPEAKGSG-------IPQVEG 72 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCC-------HHHHHH
Confidence 4889999999999999988766543211000 01112222 23344555443 245555542 566655
Q ss_pred hhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhc
Q psy6631 245 LFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRF 324 (704)
Q Consensus 245 lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~ 324 (704)
.+++.. ... ..-.++.|++.+++++++|.++|.+.|++.+||++|..++..+...
T Consensus 73 ~l~~~~--------------------~~~----~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~~~~~~- 127 (402)
T cd01031 73 VLAGLL--------------------PPN----WWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSKWFKTS- 127 (402)
T ss_pred HHcCCC--------------------Ccc----cHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHhcCC-
Confidence 554310 000 1124679999999999999999999999999999999999875321
Q ss_pred CCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHH-HhCCch--hHHHHHHHHHHHHHHHhhc
Q psy6631 325 PDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFE-MTGQIT--HIIPVMIAVLISNAVAALL 391 (704)
Q Consensus 325 p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~E-lTG~~~--~~lPimia~~is~~va~~l 391 (704)
..+...+..+||+|.++++.+ |++.+++.+| +++++. .+.|+++++++|+.+++.+
T Consensus 128 -----------~~~~~~l~~~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~ 187 (402)
T cd01031 128 -----------PEERRQLIAAGAAAGLAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLF 187 (402)
T ss_pred -----------HHHHHHHHHHHHHHhHHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 134677999999999999998 8999999999 778755 7899999999999999865
|
This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter. |
| >PRK10892 D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.2e-11 Score=130.45 Aligned_cols=141 Identities=9% Similarity=0.078 Sum_probs=110.6
Q ss_pred CChHHHHHHHhcCCC---CCCCCCCCccc---ccccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccc
Q psy6631 393 PSLYDSIILIKKLPY---LPDLLPSSSGI---YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVA 464 (704)
Q Consensus 393 ~siy~~~l~~r~~p~---l~~~~~~~~~l---~~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~ 464 (704)
.++|...+.+++.-. .. ......+ ..++|+|+|++ ++.+++++++++++.+.|.++ +...+||+|++
T Consensus 170 dsL~~~~l~~~g~~~~~~~~--~~~~~~l~~~~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~-~~~~~vVvd~~-- 244 (326)
T PRK10892 170 DALAVALLKARGFTAEDFAL--SHPGGALGRKLLLRVSDIMHTGDEIPHVSKTASLRDALLEITRK-NLGMTVICDDN-- 244 (326)
T ss_pred HHHHHHHHHHhCCCHHHHHh--cCCCchhcccccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhc-CCCeEEEEcCC--
Confidence 467777777776543 22 1223345 68899999997 899999999999999999877 66777778876
Q ss_pred cccCCCCcCCeeEEEeecCCCCCCCCcc--cccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceE
Q psy6631 465 ALLQPSLYDSIILIKKLPYLPDLLPSSS--GIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFE 542 (704)
Q Consensus 465 ~~~~p~~~~~~~LvG~Is~~dll~~~~~--~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~ 542 (704)
++++|+|+..|+...... .+...+|+|+|++++.++.+++++.|+++.|. .++...+||+++++.+|
T Consensus 245 ----------g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~-~~~~~~lpVv~~~~lvG 313 (326)
T PRK10892 245 ----------MKIEGIFTDGDLRRVFDMGIDLRQASIADVMTPGGIRVRPGILAVDALNLMQ-SRHITSVLVADGDHLLG 313 (326)
T ss_pred ----------CcEEEEEecHHHHHHHhcCCCcccCCHHHhcCCCCEEECCCCCHHHHHHHHH-HCCCcEEEEeeCCEEEE
Confidence 799999999998643322 34457899999999999999999999999995 57777889998777778
Q ss_pred EeehHHH
Q psy6631 543 QMEIKRR 549 (704)
Q Consensus 543 ~i~~~~~ 549 (704)
.+++.++
T Consensus 314 iit~~di 320 (326)
T PRK10892 314 VLHMHDL 320 (326)
T ss_pred EEEhHHh
Confidence 7777664
|
|
| >PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-10 Score=126.22 Aligned_cols=142 Identities=13% Similarity=0.067 Sum_probs=112.1
Q ss_pred CChHHHHHHHhcCCC---CCCCCCCCcccc---ccccccccccc--eEEecCCCCHHHHHHHHHhcCCccEEEeecCccc
Q psy6631 393 PSLYDSIILIKKLPY---LPDLLPSSSGIY---NVYVEDFMVRD--VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVA 464 (704)
Q Consensus 393 ~siy~~~l~~r~~p~---l~~~~~~~~~l~---~~~V~diM~~~--v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~ 464 (704)
.++|...+.+++... .. .+....+. .++|+|+|+++ +.+++++++++++.+.+.++ +...+||||++
T Consensus 165 dsL~~~~l~~~g~~~~~~~~--~~~~~~l~~~~~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~-~~~~~~Vvd~~-- 239 (321)
T PRK11543 165 DALAMAVMQARGFNEEDFAR--SHPAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRT-GLGLVAVCDAQ-- 239 (321)
T ss_pred HHHHHHHHHHcCCCHHHhcc--CCCCCHHHHHHHhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHc-CCCEEEEEcCC--
Confidence 367777777776543 22 23345577 78999999998 99999999999999999877 67899999977
Q ss_pred cccCCCCcCCeeEEEeecCCCCCCCC-cccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceE
Q psy6631 465 ALLQPSLYDSIILIKKLPYLPDLLPS-SSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFE 542 (704)
Q Consensus 465 ~~~~p~~~~~~~LvG~Is~~dll~~~-~~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~ 542 (704)
++++|+|+..|+.... .......+|+|+|+++++++.+++++.|+++.|. ..+...+||+|+ ++.+|
T Consensus 240 ----------g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~-~~~~~~lpVvd~~~~lvG 308 (321)
T PRK11543 240 ----------QQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGGTTLQAQSRAIDAKEILM-KRKITAAPVVDENGKLTG 308 (321)
T ss_pred ----------CcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCCEEECCCCCHHHHHHHHH-HcCCCEEEEEcCCCeEEE
Confidence 8999999988876432 2223456799999999999999999999999995 577888999985 55577
Q ss_pred EeehHHHh
Q psy6631 543 QMEIKRRE 550 (704)
Q Consensus 543 ~i~~~~~~ 550 (704)
.+++.++.
T Consensus 309 vIt~~di~ 316 (321)
T PRK11543 309 AINLQDFY 316 (321)
T ss_pred EEEHHHHH
Confidence 77776643
|
|
| >cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-09 Score=96.21 Aligned_cols=106 Identities=10% Similarity=0.120 Sum_probs=87.4
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceE
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKY 509 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~t 509 (704)
++.++++++++.++.+.+.++ +.+.+||+|++ ++++|+|+..|+.......+...++.++|.+++++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~-~~~~~~V~d~~------------~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~ 68 (111)
T cd04603 2 QTVSVNCENPLREAIKMINEL-GARAVVVVDEE------------NKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPI 68 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHc-CCCEEEEEcCC------------CCEEEEEEHHHHHhhccccccccChhheeecCCcE
Confidence 467789999999999999877 78899999877 78999999999876443344456799999999999
Q ss_pred EeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 510 IWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 510 V~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
+.+++++.|+++.|. ..+.+.+||+++ ++.+|.++..+.
T Consensus 69 v~~~~~l~~al~~m~-~~~~~~lpVvd~~~~~~Giit~~di 108 (111)
T cd04603 69 VYCDSKVTDLLRIFR-ETEPPVVAVVDKEGKLVGTIYEREL 108 (111)
T ss_pred ECCCCcHHHHHHHHH-HcCCCeEEEEcCCCeEEEEEEhHHh
Confidence 999999999999995 567778899976 556777766654
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.7e-08 Score=109.00 Aligned_cols=171 Identities=16% Similarity=0.186 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchh--HHHHHHHHHHHHH--HhhhhhccccCCCCCcHHHHHH
Q psy6631 169 FALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRF--LYPGIVVLLATSV--SFPLGLGKYMAGDLNTHDQLSS 244 (704)
Q Consensus 169 ~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~--l~p~l~gllvg~l--~fP~~~G~~~~g~l~~~~~i~~ 244 (704)
.+++|+++|+++++|.++..+...+++. ++| +...+++++++.+ .+|...+.+ .+++.+
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~----------~~~~~~~~p~~g~~i~~l~~~~~~~~~~g-------~~~v~~ 64 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREA----------HPWLLPFLPLAGLLIGYLYQKFGKNSEKG-------NNLIIE 64 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHHHhCcccCCC-------hHHHHH
Confidence 4789999999999999999887654321 122 1122345555533 234332221 333333
Q ss_pred hhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhc
Q psy6631 245 LFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRF 324 (704)
Q Consensus 245 lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~ 324 (704)
..++. + ..... -....|++.+.+++++|.+.|...|+..+||.+|..++..+.
T Consensus 65 ~~~~~---~-----------------~~~~~----~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~~~--- 117 (378)
T cd03682 65 EIHGP---E-----------------EGIPL----RMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRVFK--- 117 (378)
T ss_pred HHHcc---C-----------------CCCch----HHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHHhC---
Confidence 33210 0 00111 124569999999999999999999999999999999998642
Q ss_pred CCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHh--C--CchhHHHHHHHHHHHHHHHhhcC
Q psy6631 325 PDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMT--G--QITHIIPVMIAVLISNAVAALLQ 392 (704)
Q Consensus 325 p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElT--G--~~~~~lPimia~~is~~va~~l~ 392 (704)
.. ..+.-.+...||+|-++++.+ |++.+++.+|++ + ++..++|.++++++++.+++.+.
T Consensus 118 -~~--------~~~~r~l~~~g~aAglaa~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~~ 181 (378)
T cd03682 118 -LP--------EEDRRILLIAGIAAGFAAVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHALG 181 (378)
T ss_pred -CC--------HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 11 123456899999999999988 899999999997 3 35678899999999999988663
|
This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. |
| >COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.5e-09 Score=101.22 Aligned_cols=117 Identities=12% Similarity=0.141 Sum_probs=100.2
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCC---cccccc
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPS---SSGIYN 496 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~---~~~~~~ 496 (704)
.++++++|+++++.+.+++++.+++++|+++ +.+-+||++++ +++|.|++.++.+.. -+..+.
T Consensus 64 ~ita~~iM~spvv~v~pdDsi~~vv~lM~~~-g~SQlPVi~~~-------------k~VGsItE~~iv~~~le~~e~i~~ 129 (187)
T COG3620 64 RITAKTIMHSPVVSVSPDDSISDVVNLMRDK-GISQLPVIEED-------------KVVGSITENDIVRALLEGMESIRS 129 (187)
T ss_pred eEeHhhhccCCeeEECchhhHHHHHHHHHHc-CCccCceeeCC-------------eeeeeecHHHHHHHHhccccchhh
Confidence 5889999999999999999999999999998 89999999875 899999999987442 255677
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhc
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQ 553 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~ 553 (704)
.+|+++|...+++|++|.++..+-+++. . -|-+-|++++..+|+++..|..++.
T Consensus 130 ~~vr~vM~e~fP~Vs~~~~l~vI~~LL~--~-~~AVlV~e~G~~vGIITk~DI~k~~ 183 (187)
T COG3620 130 LRVREVMGEPFPTVSPDESLNVISQLLE--E-HPAVLVVENGKVVGIITKADIMKLL 183 (187)
T ss_pred hhHHHHhcCCCCcCCCCCCHHHHHHHHh--h-CCeEEEEeCCceEEEEeHHHHHHHH
Confidence 8999999999999999999999999983 2 3345555888889999988876654
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.9e-09 Score=119.36 Aligned_cols=122 Identities=13% Similarity=0.034 Sum_probs=104.3
Q ss_pred ccccccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccc
Q psy6631 416 SGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIY 495 (704)
Q Consensus 416 ~~l~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~ 495 (704)
..+..++++++|.+++.++.++++++|+.+.+.++ +.+.+||+|++ ++++|+|+.+|+.... .
T Consensus 84 ~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~-~~s~l~VVD~~------------gklvGIVT~rDL~~~~----~ 146 (479)
T PRK07807 84 EVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKR-AHGAVVVVDEE------------GRPVGVVTEADCAGVD----R 146 (479)
T ss_pred HHHhhcccccccccCCeEECCCCCHHHHHHHHHhc-CCceEEEECCC------------CeEEEEEeHHHHhcCc----c
Confidence 45667889999999999999999999999999987 78999999977 7999999999985432 2
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCC
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRR 555 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~ 555 (704)
..+|.|+|+++++++++++++.|+++.|. .++.+.+||+|+ ++.+|.+++.++....+.
T Consensus 147 ~~~V~diMt~~~itV~~d~sL~eAl~lM~-~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~ 206 (479)
T PRK07807 147 FTQVRDVMSTDLVTLPAGTDPREAFDLLE-AARVKLAPVVDADGRLVGVLTRTGALRATIY 206 (479)
T ss_pred CCCHHHhccCCceEECCCCcHHHHHHHHH-hcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 35699999999999999999999999995 577888999984 677899999988664433
|
|
| >cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-08 Score=91.77 Aligned_cols=105 Identities=17% Similarity=0.167 Sum_probs=86.6
Q ss_pred eEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc---ccccccccccccccCc
Q psy6631 431 VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS---SGIYNVYVEDFMVRDV 507 (704)
Q Consensus 431 v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~---~~~~~~~V~dvM~~~v 507 (704)
+.++.++++++++.+.+.++ +...+||+|++ ++++|+++..|+..... ......++.++|.+++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~-~~~~~~Vvd~~------------g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~ 69 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEP-GIDLVVVCDPH------------GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAV 69 (114)
T ss_pred eEEECCCCcHHHHHHHHHhc-CCCEEEEECCC------------CCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCC
Confidence 56789999999999999887 78999999877 78999999999874332 2345578999999999
Q ss_pred eEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 508 KYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 508 ~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
+++++++++.++++.|. ..+...+||+++ ++.+|.+++.+.
T Consensus 70 ~~v~~~~~l~~a~~~m~-~~~~~~lpVvd~~~~~~Gvi~~~dl 111 (114)
T cd04619 70 VSCRPGDLLHDVWQVMK-QRGLKNIPVVDENARPLGVLNARDA 111 (114)
T ss_pred eeECCCCCHHHHHHHHH-HcCCCeEEEECCCCcEEEEEEhHhh
Confidence 99999999999999995 466777888875 466777766653
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd03685 ClC_6_like ClC-6-like chloride channel proteins | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.6e-08 Score=108.39 Aligned_cols=197 Identities=13% Similarity=0.027 Sum_probs=122.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHhhhcch----hHHHHHHHHHHHHHHh---hhhhccccC
Q psy6631 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNK--KMNAFLQKNR----FLYPGIVVLLATSVSF---PLGLGKYMA 233 (704)
Q Consensus 163 ~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~--~~~~~l~~~~----~l~p~l~gllvg~l~f---P~~~G~~~~ 233 (704)
...+...+++|+++|++|.+|.+...+...++.... .........+ ...+++++++.+.+.. |...|.+
T Consensus 30 ~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~p~a~GsG-- 107 (466)
T cd03685 30 FLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLVYLGLNLVLVLVAALLVAYIAPTAAGSG-- 107 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC--
Confidence 345667799999999999999999988775533211 0000000011 1344455566665532 6655553
Q ss_pred CCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHH
Q psy6631 234 GDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFG 313 (704)
Q Consensus 234 g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G 313 (704)
..++....++... +....+ --++.|++.+.++.|+|.+.|-..|+.-+||++|
T Consensus 108 -----ip~v~~~l~g~~~------------------~~~l~~----r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig 160 (466)
T cd03685 108 -----IPEVKGYLNGVKI------------------PHILRL----KTLLVKIVGVILSVSGGLALGKEGPMIHIGACIA 160 (466)
T ss_pred -----HHHHHHHHcCcCc------------------cccchH----HHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHH
Confidence 4555555442100 000011 1256899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC---CccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHhC---CchhHHHHHHHHHHHHH
Q psy6631 314 RMIGEIIFLRFPD---GITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMTG---QITHIIPVMIAVLISNA 386 (704)
Q Consensus 314 ~~~G~~~~~~~p~---~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElTG---~~~~~lPimia~~is~~ 386 (704)
..++......+.. ...+ ..+..+--.+..+||||-++++.+ |++.++..+|.++ ..+...+.++++++|..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~ 238 (466)
T cd03685 161 AGLSQGGSTSLRLDFRWFRY--FRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTF 238 (466)
T ss_pred HHHhhccccccccchhhhhh--ccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHH
Confidence 9999743100000 0000 000123346899999999999988 8999999999876 23455566666666666
Q ss_pred HHhh
Q psy6631 387 VAAL 390 (704)
Q Consensus 387 va~~ 390 (704)
+++.
T Consensus 239 va~~ 242 (466)
T cd03685 239 TLNF 242 (466)
T ss_pred HHHH
Confidence 6654
|
This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals. |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-08 Score=113.59 Aligned_cols=119 Identities=13% Similarity=0.149 Sum_probs=96.5
Q ss_pred ccccccc---cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccc
Q psy6631 422 YVEDFMV---RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVY 498 (704)
Q Consensus 422 ~V~diM~---~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~ 498 (704)
+|+++|. .+..++++++|++|+++.+.++ ++..+||+|++ .++++++|+|+..|+.... ...+.+
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~-~~~~vpVVD~~---------~~~gkLvGIVT~~DLr~~~--~~~~~~ 162 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKT-GHSTVAVTEDG---------TAHGKLLGIVTSRDYRISR--MSLDTK 162 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhc-CCCeEEEEeCC---------CcCCEEEEEEEcHHhhccc--cCCCCC
Confidence 4777775 3456899999999999999988 88999999862 0127999999999986432 245678
Q ss_pred ccccccc--CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhc
Q psy6631 499 VEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQ 553 (704)
Q Consensus 499 V~dvM~~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~ 553 (704)
|+++|++ ++.++++++++.|+++.|. .+++..+||+|+ ++.+|.+++.+.....
T Consensus 163 V~dIMt~~~~~itv~~d~~l~eAl~lM~-e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 163 VKDFMTPFEKLVTANEGTTLKEANDIIW-DHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred HHHHhCCCCCeEEECCCCcHHHHHHHHH-HcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 9999996 7889999999999999995 578889999985 6678888888876533
|
|
| >TIGR00393 kpsF KpsF/GutQ family protein | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-08 Score=106.27 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=91.8
Q ss_pred ccccccccccc-eEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc-cccccc
Q psy6631 420 NVYVEDFMVRD-VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS-SGIYNV 497 (704)
Q Consensus 420 ~~~V~diM~~~-v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~-~~~~~~ 497 (704)
.++|+|+|.++ +.+++++++++++.+.+.+. +...+||+|++ ++++|+++..|+..... ......
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~-~~~~~~Vvd~~------------g~~~Givt~~dl~~~~~~~~~~~~ 220 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEK-RLGSAIVCDEN------------NQLVGVFTDGDLRRALLGGGSLKS 220 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhc-CCcEEEEEeCC------------CCEEEEEEcHHHHHHHhcCCcccC
Confidence 47899999998 99999999999999999877 78899999977 78999999999865322 223456
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCC-CceE
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS-GKFE 542 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~-~~~~ 542 (704)
+|+|+|.++++++.+++++.|+++.|. ..+.+.+||+|++ +.+|
T Consensus 221 ~v~~im~~~~~~v~~~~~l~~a~~~m~-~~~~~~lpVvd~~g~l~G 265 (268)
T TIGR00393 221 EVRDFMTLGPKTFKLDALLLEALEFLE-RRKITSLVVVDDHNKVLG 265 (268)
T ss_pred cHHHhCCCCCeEECCCCcHHHHHHHHH-HcCCcEEEEECCCCeEEE
Confidence 799999999999999999999999995 5777788999764 4444
|
This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli. |
| >cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.6e-08 Score=89.96 Aligned_cols=107 Identities=11% Similarity=0.168 Sum_probs=82.7
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccc---------ccc
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYN---------VYV 499 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~---------~~V 499 (704)
+++.+++++++++++.+.+.++ +.+.+||+|++ ++++|+++.+|++.....++.. ...
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~-~~~~~pVv~~~------------~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~ 67 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVER-RVSALPIVDEN------------GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALER 67 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHc-CCCeeeEECCC------------CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhh
Confidence 3578899999999999999888 78999999877 7899999999987432221111 123
Q ss_pred ccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 500 EDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 500 ~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
.++|.+++.++.+++++.++++.|. ..+...+||+++ ++.+|.+++.+.
T Consensus 68 ~~~~~~~~~~v~~~~~l~~~~~~m~-~~~~~~l~Vvd~~~~~~Givt~~di 117 (120)
T cd04641 68 RSQDFEGVRTCSPDDCLRTIFDLIV-KARVHRLVVVDENKRVEGIISLSDI 117 (120)
T ss_pred cccCCCCCeEEcCCCcHHHHHHHHH-hcCccEEEEECCCCCEEEEEEHHHh
Confidence 3456677899999999999999995 567778899986 456777766653
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR01137 cysta_beta cystathionine beta-synthase | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.7e-08 Score=112.51 Aligned_cols=139 Identities=14% Similarity=0.062 Sum_probs=104.0
Q ss_pred HHHHHHHhcCCCCCCCCCCCccccccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCe
Q psy6631 396 YDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSI 475 (704)
Q Consensus 396 y~~~l~~r~~p~l~~~~~~~~~l~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~ 475 (704)
++..+..+++-..+ .......+..++|+|+|.+++.++.++++++++++.|.++ +.+.+||+|++ +
T Consensus 311 ~~~w~~~~~~~~~~-~~~~~~~l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~-~~~~~~Vvd~~------------~ 376 (454)
T TIGR01137 311 NDEWMKDNGFLDDE-VLTVFDVLKNATVKDLHLPAPVTVHPTETVGDAIEILREY-GFDQLPVVTEA------------G 376 (454)
T ss_pred ChHHHHhcCCcccc-cccHHHHhccCCHHHhCcCCCeEECCCCcHHHHHHHHHHc-CCCEEEEEcCC------------C
Confidence 34445555542222 1223345788999999999999999999999999999887 78899999876 7
Q ss_pred eEEEeecCCCCCCCCc--ccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhh
Q psy6631 476 ILIKKLPYLPDLLPSS--SGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREE 551 (704)
Q Consensus 476 ~LvG~Is~~dll~~~~--~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~ 551 (704)
+++|+|+..|++.... ....+.+|.++|+++++++++++++.++.+.|.+ .+. .+|+++++.+|.+++.++..
T Consensus 377 ~~~Givt~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~-~~~--~vV~~~g~liGvvt~~dll~ 451 (454)
T TIGR01137 377 KVLGSVTLRELLSALFAGKANPDDAVSKVMSKKFIQIGEGEKLSDLSKFLEK-NSS--AIVTEEGKPIGVVTKIDLLS 451 (454)
T ss_pred eEEEEEEHHHHHHHHhccCCCcCCCHHHhcCCCCeEECCcCcHHHHHHHHHH-CCe--eEEEECCEEEEEEEHHHHHH
Confidence 8999999999865321 1233457999999999999999999999999954 333 33555566678777777544
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. |
| >cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.3e-08 Score=89.46 Aligned_cols=107 Identities=17% Similarity=0.180 Sum_probs=86.0
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccc------------ccc
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSG------------IYN 496 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~------------~~~ 496 (704)
+++.++.+++++.++.+.+.+. +++.+||+|++ ++++|+++..|++...... ...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~V~~~~------------~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~ 68 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRH-RIKALPVVDGD------------RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKP 68 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHc-CCceeeEECCC------------CCEEEEEEHHHHHhhhcccccchhhhhhhccccc
Confidence 5778899999999999999887 78899999876 7899999999986432211 234
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
.++.++|+++++++.+++++.++++.|. ..+...+||+++ +..+|.++..+.
T Consensus 69 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~Vv~~~g~~~Gvit~~di 121 (124)
T cd04600 69 ETVGDIMSPPVVTVRPDTPIAELVPLLA-DGGHHHVPVVDEDRRLVGIVTQTDL 121 (124)
T ss_pred ccHHHhccCCCeeeCCCCcHHHHHHHHH-hcCCCceeEEcCCCCEEEEEEhHHh
Confidence 5789999999999999999999999995 466778888874 555666666553
|
These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.3e-08 Score=89.47 Aligned_cols=106 Identities=16% Similarity=0.160 Sum_probs=85.7
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceE
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKY 509 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~t 509 (704)
++.++.++++++++.+.+.+. +...+||+|++ ++++|+++..|+...........++.++|.+++++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~-~~~~~~V~~~~------------~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~ 68 (111)
T cd04639 2 HFETLSPADTLDDAADALLAT-TQHEFPVVDGD------------GHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPT 68 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHc-CCCcceEECCC------------CcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcE
Confidence 567789999999999999876 78899999876 78999999999865433333446799999999999
Q ss_pred EeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 510 IWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 510 V~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
+.+++++.++++.|. ..+.+.+||+++ +..+|.++..++
T Consensus 69 i~~~~~~~~~~~~~~-~~~~~~~~Vv~~~~~~~G~it~~dl 108 (111)
T cd04639 69 VSPSATLDAVLRLMQ-QGGAPAVPVVDGSGRLVGLVTLENV 108 (111)
T ss_pred ECCCCcHHHHHHHHH-hcCCceeeEEcCCCCEEEEEEHHHh
Confidence 999999999999995 455667888876 566777776654
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-08 Score=90.55 Aligned_cols=105 Identities=14% Similarity=0.081 Sum_probs=83.7
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc--cccccccccccccc--
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS--SGIYNVYVEDFMVR-- 505 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~--~~~~~~~V~dvM~~-- 505 (704)
++.+++++++++++.+.|.++ +...+||+|++ ++++|+++..|++.... ......+++++|++
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~-~~~~~~V~d~~------------~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 68 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLE-DVGSLFVVDED------------GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMP 68 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHc-CCCEEEEEcCC------------CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCC
Confidence 467899999999999999877 77899999976 78999999999865432 22335678899985
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccCC----CceEEeehHH
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS----GKFEQMEIKR 548 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~----~~~~~i~~~~ 548 (704)
+++++.+++++.+++++|. ..+.+.+||++++ +.+|.+++.+
T Consensus 69 ~~~~v~~~~~l~~~~~~~~-~~~~~~lpVvd~~~~~~~l~Gvit~~~ 114 (118)
T cd04617 69 NITTTTPEESVLEAAKKLI-EHQVDSLPVVEKVDEGLEVIGRITKTN 114 (118)
T ss_pred CcEEECCCCcHHHHHHHHH-HcCCCEeeEEeCCCccceEEEEEEhhh
Confidence 7899999999999999995 4677788998764 4466555544
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >KOG0476|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-06 Score=99.33 Aligned_cols=92 Identities=52% Similarity=0.729 Sum_probs=77.2
Q ss_pred CccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC---
Q psy6631 461 SSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--- 537 (704)
Q Consensus 461 ~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--- 537 (704)
+.++|.||||+||+-+.+.-+++...+.......+.+.|+|+|.+|+.++++|+++.|+.+.+.... ++-+|.||+
T Consensus 552 NAVa~~LQPSiYDSII~IKklPYLPDlpps~~~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~-lR~~PlV~s~es 630 (931)
T KOG0476|consen 552 NAVAASLQPSIYDSIIRIKKLPYLPDLPPSRSSVHTVKVEHIMVTDVKYITKDTTYRELREALQTTT-LRSFPLVESKES 630 (931)
T ss_pred HHHHHHhCcchhhheeeeccCCcCCCCCCcccceeEEEeeeeccccceeeeccCcHHHHHHHHHhCc-cceeccccCccc
Confidence 3389999999999998898888888888888888999999999999999999999999999996543 777787775
Q ss_pred CCceEEeehHHHhhhc
Q psy6631 538 SGKFEQMEIKRREERQ 553 (704)
Q Consensus 538 ~~~~~~i~~~~~~~~~ 553 (704)
.-.+|+++|+.+.++.
T Consensus 631 miLlGSV~R~~L~~ll 646 (931)
T KOG0476|consen 631 MILLGSVARRYLTALL 646 (931)
T ss_pred ceeeehhHHHHHHHHH
Confidence 4458888888775443
|
|
| >cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.8e-08 Score=85.80 Aligned_cols=92 Identities=18% Similarity=0.194 Sum_probs=74.3
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceE
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKY 509 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~t 509 (704)
.+.+++++++++++.+.|.++ +.+++||+|++ +++++|+++..|+..... +.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~-~~~~~~Vvd~~-----------~~~~~Givt~~Dl~~~~~---------------~~~ 54 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVEN-GIRSAPLWDSR-----------KQQFVGMLTITDFILILR---------------LVS 54 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHc-CCceEEEEeCC-----------CCEEEEEEEHHHHhhhee---------------eEE
Confidence 467899999999999999888 78999999853 168999999999864221 789
Q ss_pred EeCCCCHHHHHHHhHhcCCCceeecccCC--CceEEeehHHH
Q psy6631 510 IWNNMTYRDLKNLLKENRSLRVFPLVESS--GKFEQMEIKRR 549 (704)
Q Consensus 510 V~~d~sl~ea~~~m~~~~rl~Vvpvv~~~--~~~~~i~~~~~ 549 (704)
++|++++.|+++.|. .++...+||++++ +.+|.+++++.
T Consensus 55 v~~~~~l~~a~~~m~-~~~~~~lpVvd~~~~~~~giit~~d~ 95 (98)
T cd04618 55 IHPERSLFDAALLLL-KNKIHRLPVIDPSTGTGLYILTSRRI 95 (98)
T ss_pred eCCCCcHHHHHHHHH-HCCCCEeeEEECCCCCceEEeehhhh
Confidence 999999999999995 4677788888753 56676666553
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50 | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.5e-08 Score=89.92 Aligned_cols=107 Identities=14% Similarity=0.131 Sum_probs=83.4
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccccccccccc--C
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVR--D 506 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~--~ 506 (704)
+++.+++++++++++.+.+.++.+...+||+|++ ++++|+++..|++..........++.++|+. +
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~------------~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~ 68 (114)
T cd04801 1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE------------GRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAK 68 (114)
T ss_pred CCcceeCCCCCHHHHHHHHhccCCceeEEEEcCC------------CcEEEEEEHHHHHHHHHhhccccchhhhhccccc
Confidence 3567889999999999988765226889999877 7899999999987554333345678999984 3
Q ss_pred ceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHH
Q psy6631 507 VKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKR 548 (704)
Q Consensus 507 v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~ 548 (704)
++++.+++++.++++.|. ..+...+||+++ ++.+|.++..+
T Consensus 69 ~~~v~~~~~l~~a~~~~~-~~~~~~l~Vv~~~~~~~Gvl~~~d 110 (114)
T cd04801 69 LVTVLSEESLAEVLKLLE-EQGLDELAVVEDSGQVIGLITEAD 110 (114)
T ss_pred ceEECCCCcHHHHHHHHH-HCCCCeeEEEcCCCcEEEEEeccc
Confidence 679999999999999995 466778888876 55567665554
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.8e-08 Score=87.62 Aligned_cols=107 Identities=15% Similarity=0.126 Sum_probs=85.0
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCC--Ccc-cccccccccccccC
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLP--SSS-GIYNVYVEDFMVRD 506 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~--~~~-~~~~~~V~dvM~~~ 506 (704)
++.++.++++++++++.+.++ +.+.+||+|++ .++++|+++..|++.. ... .....++.++|.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~V~~~~-----------~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~ 69 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEH-GVSSLVVEKRR-----------ESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKP 69 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHc-CCCEEEEEECC-----------CCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCC
Confidence 567899999999999999877 78899999752 1589999999998642 111 22346799999999
Q ss_pred ceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 507 VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 507 v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
++++++++++.|+++.|. ..+.+.+||+++++.+|.++..++
T Consensus 70 ~~~v~~~~~l~~~~~~~~-~~~~~~~~Vvd~~~~~Gvi~~~dl 111 (114)
T cd04630 70 LISVSPDMDIKYCARLME-RTNIRRAPVVENNELIGIISLTDI 111 (114)
T ss_pred CeeECCCCCHHHHHHHHH-HcCCCEeeEeeCCEEEEEEEHHHh
Confidence 999999999999999995 467778888877666777766653
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.5e-08 Score=87.10 Aligned_cols=105 Identities=12% Similarity=0.143 Sum_probs=85.0
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc-cccccccccccccCce
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS-GIYNVYVEDFMVRDVK 508 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~-~~~~~~V~dvM~~~v~ 508 (704)
++..++++++++++.+.+.++ +++.+||+|++ ++++|+++..|+...... .....++.++|.+++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~v~d~~------------~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~ 68 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKY-NTNEIIVKDNE------------EKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVF 68 (111)
T ss_pred CceEECCCccHHHHHHHHHHh-CCCeEEEEcCC------------CCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcE
Confidence 467789999999999999887 78899999876 789999999998754221 2234578899999999
Q ss_pred EEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHH
Q psy6631 509 YIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKR 548 (704)
Q Consensus 509 tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~ 548 (704)
++.+++++.++++.|. ....+.+||++++..+|.++..+
T Consensus 69 ~v~~~~~l~~~~~~~~-~~~~~~~~Vv~~~~~~G~it~~d 107 (111)
T cd04626 69 YVNEEDTIDEALDIMR-EKQIGRLPVVDDNKLIGVVRTKD 107 (111)
T ss_pred EEcCCCcHHHHHHHHH-HcCCCeeeEeECCEEEEEEEhHH
Confidence 9999999999999995 46677888887655667666655
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK15094 magnesium/cobalt efflux protein CorC; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.4e-08 Score=105.44 Aligned_cols=123 Identities=11% Similarity=0.078 Sum_probs=98.7
Q ss_pred ccccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccc
Q psy6631 419 YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYN 496 (704)
Q Consensus 419 ~~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~ 496 (704)
...+|+|+|++ ++.+++++++++++++.+.++ +++.+||++++ .++++|+|+.+|++.........
T Consensus 65 ~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~-~~sr~PV~~~~-----------~d~iiGiv~~kDll~~~~~~~~~ 132 (292)
T PRK15094 65 ADQRVRDIMIPRSQMITLKRNQTLDECLDVIIES-AHSRFPVISED-----------KDHIEGILMAKDLLPFMRSDAEA 132 (292)
T ss_pred CCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhc-CCcEEEEecCC-----------CCcEEEEEEHHHHHhHhhccCCc
Confidence 35789999997 699999999999999999988 89999999754 14799999999997433222223
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh-hcCC
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE-RQRR 555 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~-~~~~ 555 (704)
..+.++|++ +.++.+++++.++++.| +.++.+.++|+|+ +..+|.++..++.. ++|.
T Consensus 133 ~~l~~l~r~-~~~V~e~~~l~~~L~~m-~~~~~~~a~VvDe~G~viGiVTleDIle~ivGe 191 (292)
T PRK15094 133 FSMDKVLRQ-AVVVPESKRVDRMLKEF-RSQRYHMAIVIDEFGGVSGLVTIEDILELIVGE 191 (292)
T ss_pred CCHHHHcCC-CcCcCCCCcHHHHHHHH-HhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCC
Confidence 458899986 45899999999999999 5678889999986 56688888887644 4453
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.68 E-value=6e-08 Score=109.74 Aligned_cols=119 Identities=14% Similarity=0.016 Sum_probs=99.9
Q ss_pred ccccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccc
Q psy6631 418 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNV 497 (704)
Q Consensus 418 l~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~ 497 (704)
+..+++.++|.+++.++.++++++++.+.|.++ +.+.+||+|+ ++++|+|+.+|+.... ...
T Consensus 85 v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~-~~~~~vVvD~-------------gklvGIVT~rDL~~~~----~~~ 146 (475)
T TIGR01303 85 VAFVKSRDLVLDTPITLAPHDTVSDAMALIHKR-AHGAAVVILE-------------DRPVGLVTDSDLLGVD----RFT 146 (475)
T ss_pred HhhcchhhccccCCeEECCCCCHHHHHHHHHhc-CCeEEEEEEC-------------CEEEEEEEHHHhhcCC----CCC
Confidence 446889999999999999999999999999887 7788888874 4799999999985432 235
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCC
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRR 555 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~ 555 (704)
+|+++|+++++++.+++++.|++++|. ..+.+.+||+|+ ++.+|.+++.++......
T Consensus 147 ~V~dIMt~~litv~~~~sL~eAl~lM~-~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 147 QVRDIMSTDLVTAPADTEPRKAFDLLE-HAPRDVAPLVDADGTLAGILTRTGALRATIY 204 (475)
T ss_pred CHHHHccCCceEeCCCCcHHHHHHHHH-HcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence 799999999999999999999999995 577888899974 667899999988664443
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.3e-08 Score=86.47 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=84.8
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccc---ccccccccccccC
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSG---IYNVYVEDFMVRD 506 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~---~~~~~V~dvM~~~ 506 (704)
++..+.++++++++.+.+.++ +++.+||+|++ ++++|+++..|++...... ....++.++|.++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~-~~~~~~V~~~~------------~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 68 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEK-NIGAVVVVDDG------------GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRN 68 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHc-CCCeEEEECCC------------CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCC
Confidence 567789999999999999877 78999999876 6899999999987432221 2245799999999
Q ss_pred ceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 507 VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 507 v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
+.++.+++++.++.+.|.+ .+...+||+++++.+|.++..+.
T Consensus 69 ~~~v~~~~~~~~~l~~~~~-~~~~~~~Vv~~~~~~Gvit~~di 110 (113)
T cd04623 69 VITVTPDDTVDEAMALMTE-RRFRHLPVVDGGKLVGIVSIGDV 110 (113)
T ss_pred cEEECCCCcHHHHHHHHHH-cCCCEeEEEeCCEEEEEEEHHHh
Confidence 9999999999999999954 55567788777666776666653
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR00400 mgtE Mg2+ transporter (mgtE) | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.4e-08 Score=110.76 Aligned_cols=118 Identities=10% Similarity=0.075 Sum_probs=97.4
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhc----CCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccc
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKEN----RSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIY 495 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~----~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~ 495 (704)
..+|+++|++++.++++++|++++.+.+++. .+...+||+|++ ++++|+++.+|++... .
T Consensus 130 e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~------------~~l~GvV~l~dLl~a~----~ 193 (449)
T TIGR00400 130 DDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES------------KHLKGVLSIRDLILAK----P 193 (449)
T ss_pred cchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC------------CeEEEEEEHHHHhcCC----C
Confidence 4579999999999999999999999999851 133568889877 7899999999987643 2
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcC
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQR 554 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~ 554 (704)
+.+|+++|++++.++++++++.|+++.|. ..+...+||+|+ ++.+|.++..+......
T Consensus 194 ~~~v~~im~~~~~~v~~~~~~~eal~~m~-~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~ 252 (449)
T TIGR00400 194 EEILSSIMRSSVFSIVGVNDQEEVARLIQ-KYDFLAVPVVDNEGRLVGIVTVDDIIDVIQ 252 (449)
T ss_pred CCcHHHHhCCCCeeECCCCCHHHHHHHHH-HcCCCEEeEEcCCCeEEEEEEHHHHHHHHH
Confidence 35799999999999999999999999995 567788999986 56688888887765443
|
This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer. |
| >COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-08 Score=103.78 Aligned_cols=121 Identities=14% Similarity=0.230 Sum_probs=96.1
Q ss_pred ccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCC
Q psy6631 494 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNP 572 (704)
Q Consensus 494 ~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~ 572 (704)
....+-.|+|++||+++++|+++.++.++| ..++++-+||.|+ .+.+|+++..+...... + ..-+.|+-
T Consensus 242 ~~~LtcadIMSrdVvtv~~~ts~dhA~~ll-~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~---~----~p~qrlr~-- 311 (382)
T COG3448 242 MGELTCADIMSRDVVTVSTDTSIDHARKLL-QEHRIKALPVLDEHRRLVGIVTQRDLLKHAR---P----SPFQRLRF-- 311 (382)
T ss_pred hccccHHHhcCccceecCCcCChHHHHHHH-HHcCcccccccccccceeeeeeHHHHhhccC---c----chHHHhhc--
Confidence 345678899999999999999999999999 5688999999987 55677777777543322 1 11112221
Q ss_pred CCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 573 HGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+ ++.+...+|+ ++.+.+|++++-+.-..|..-+.+.+ ||+|.+|+++|||+.
T Consensus 312 ---------~--~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~l--pvld~~g~lvGIvsQ 364 (382)
T COG3448 312 ---------L--RPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHAL--PVLDAAGKLVGIVSQ 364 (382)
T ss_pred ---------c--CCCcccccccCcceeecCCCcHHHHHHHhhcCCccee--eEEcCCCcEEEEeeH
Confidence 1 1226788999 99999999999999999999999987 999999999999998
|
|
| >cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.1e-08 Score=87.21 Aligned_cols=107 Identities=14% Similarity=0.147 Sum_probs=85.9
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccc--ccccccccccccC
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSG--IYNVYVEDFMVRD 506 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~--~~~~~V~dvM~~~ 506 (704)
|++.++.++++++++.+.+.+. +...+||+|++ ++++|+++..|+....... ....++.++|.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~------------~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~ 67 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHS-PENNFPVVDDD------------GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKP 67 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhC-CCcceeEECCC------------CCEEEEEEHHHHHHHHhcccccccEEHHHhccCC
Confidence 4677899999999999999887 78899999877 7899999999997432222 2237899999999
Q ss_pred ceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHH
Q psy6631 507 VKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRR 549 (704)
Q Consensus 507 v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~ 549 (704)
+.++.+++++.++++.|. ..+...+|++++ ++.+|.++..++
T Consensus 68 ~~~v~~~~~~~~~~~~~~-~~~~~~~~Vv~~~~~~~~Gvvt~~di 111 (114)
T cd04613 68 PVVVYPEDSLEDALKKFE-DSDYEQLPVVDDDPGKLLGILSRSDL 111 (114)
T ss_pred CcEEcCCCCHHHHHHHHh-hCCccEeeEEeCCCCEEEEEEEhHHh
Confidence 999999999999999995 466667888765 556776666553
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a |
| >cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.1e-08 Score=91.63 Aligned_cols=108 Identities=15% Similarity=0.068 Sum_probs=83.5
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc--ccccccccccccccC
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS--SGIYNVYVEDFMVRD 506 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~--~~~~~~~V~dvM~~~ 506 (704)
+++.++.+++++.++.+.|.++ +...+||+|++ ++++|+++..|++.... ....+.+|+++|+++
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~-~~~~~~Vvd~~------------~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~ 68 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEK-GFDQLPVVDES------------GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQ 68 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHc-CCCEEEEEcCC------------CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhcc
Confidence 4578899999999999999887 78899999877 78999999999874322 123557899999999
Q ss_pred ceEEeCCCCHHHHHHHhHhcC--------CCceeecccC-CCceEEeehHHH
Q psy6631 507 VKYIWNNMTYRDLKNLLKENR--------SLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 507 v~tV~~d~sl~ea~~~m~~~~--------rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
+.++++++++.++++++...+ +..-+||+++ ++.+|.+++.|.
T Consensus 69 ~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl 120 (124)
T cd04608 69 FKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDL 120 (124)
T ss_pred ceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHh
Confidence 999999999999999763321 2333445554 566777776664
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.4e-08 Score=109.87 Aligned_cols=117 Identities=12% Similarity=0.048 Sum_probs=95.7
Q ss_pred ccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccccccccc
Q psy6631 424 EDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFM 503 (704)
Q Consensus 424 ~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM 503 (704)
+..|.++++++.+++|++|+.+++.++ +++.+||+|++. .+++++|+|+.+|+.... +.+.+|.++|
T Consensus 103 ~~gmi~dpvtV~pd~tV~dA~~lm~~~-~~~~lpVvD~~~---------~~GklvGIVT~~DL~~v~---~~~~~V~eIM 169 (505)
T PLN02274 103 RVGFVSDPVVKSPSSTISSLDELKASR-GFSSVCVTETGT---------MGSKLLGYVTKRDWDFVN---DRETKLSEVM 169 (505)
T ss_pred cccccCCCeeeCCCCcHHHHHHHHHhc-CCceEEEEeCCC---------cCCeEEEEEEHHHHhhcc---ccCCcHHHHh
Confidence 334789999999999999999999887 889999998630 126899999999986443 3467899999
Q ss_pred ccC--ceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcC
Q psy6631 504 VRD--VKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQR 554 (704)
Q Consensus 504 ~~~--v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~ 554 (704)
+++ ++++.+++++.|+++.|. ..+.+.+||+|+ ++.+|.+++.++.....
T Consensus 170 t~~~~lvtv~~~~sL~eAl~~m~-~~~~~~LPVVD~~g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 170 TSDDDLVTAPAGIDLEEAEAVLK-DSKKGKLPLVNEDGELVDLVTRTDVKRVKG 222 (505)
T ss_pred ccCCCcEEECCCCCHHHHHHHHH-HcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 987 789999999999999995 577888899974 66788888888765443
|
|
| >cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.4e-08 Score=90.21 Aligned_cols=106 Identities=12% Similarity=0.152 Sum_probs=85.7
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccc---------------
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGI--------------- 494 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~--------------- 494 (704)
++.+++++++++++++.|.++ +...+||+|++ ++++|+++..|++.......
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~-~~~~l~V~d~~------------~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 68 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKN-GVGRVIVVDDN------------GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKA 68 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHc-CCCcceEECCC------------CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhc
Confidence 456789999999999999987 78899999987 79999999999874322110
Q ss_pred ----------cccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 495 ----------YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 495 ----------~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
...+|+++|.++++.+.+++++.++++.|.+ .+...+||+++++.+|.++..++
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~-~~~~~l~Vv~~~~~~Gvit~~di 132 (135)
T cd04621 69 GQKRYRYVKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLE-ANISGLPVVDNDNIVGVITKTDI 132 (135)
T ss_pred ccccccccccccccHHHhcCCCCeEECCCCCHHHHHHHHHH-cCCCEEEEEeCCEEEEEEEHHHH
Confidence 1457999999999999999999999999954 56777888877666777766653
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >COG0517 FOG: CBS domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-07 Score=85.53 Aligned_cols=111 Identities=20% Similarity=0.293 Sum_probs=93.1
Q ss_pred ccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccc-ccccc
Q psy6631 424 EDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNV-YVEDF 502 (704)
Q Consensus 424 ~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~-~V~dv 502 (704)
.++|.+++.++.++.++.++...|.++ +...+||++.. +++|+++..|+........... ++.++
T Consensus 2 ~~~~~~~~~~v~~~~~~~~a~~~m~~~-~~~~~~v~~~~-------------~l~Giit~~di~~~~~~~~~~~~~v~~v 67 (117)
T COG0517 2 KDIMTKDVITVKPDTSVRDALLLMSEN-GVSAVPVVDDG-------------KLVGIITERDILRALAAGGKRLLPVKEV 67 (117)
T ss_pred cccccCCCEEECCCCcHHHHHHHHHHc-CCCEEEEeeCC-------------EEEEEEEHHHHHHHHhccCCccccHHHh
Confidence 355668899999999999999999998 79999999864 7999999999987765554444 79999
Q ss_pred cccCceEEeCCCCHHHHHHHhHhcCCCceeecccCC--CceEEeehHH
Q psy6631 503 MVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS--GKFEQMEIKR 548 (704)
Q Consensus 503 M~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~--~~~~~i~~~~ 548 (704)
|++++.++++++++.++.+.|.+..+.+.+||++++ +.+|.+++.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~d 115 (117)
T COG0517 68 MTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSD 115 (117)
T ss_pred ccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHH
Confidence 999999999999999999999532578899999876 5677666655
|
|
| >cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-07 Score=84.80 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=85.4
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCce
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVK 508 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~ 508 (704)
+++.+++.+++++++.+.+.+. +...+||+|++ +++|+++..|+...........++.++|.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~d~~-------------~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~ 67 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRY-GHTALPVVEGG-------------RVVGIISRRDVEKALRHGLGHAPVKDYMSTDVV 67 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHc-CCCeeeEeeCC-------------EEEEEEEHHHHHHHHhcccccCcHHHHhcCCCE
Confidence 4677899999999999999877 77899999854 799999999986543333356789999999999
Q ss_pred EEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 509 YIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 509 tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
++.+++++.++++.|.+ .....+||++++..+|.++..++
T Consensus 68 ~v~~~~~l~~~~~~~~~-~~~~~~~V~~~~~~~Gvvt~~di 107 (110)
T cd04595 68 TVPPDTPLSEVQELMVE-HDIGRVPVVEDGRLVGIVTRTDL 107 (110)
T ss_pred EECCCCcHHHHHHHHHH-cCCCeeEEEeCCEEEEEEEhHHh
Confidence 99999999999999954 55667777776666776666653
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-07 Score=84.39 Aligned_cols=105 Identities=15% Similarity=0.194 Sum_probs=84.5
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCce
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVK 508 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~ 508 (704)
+++.++.++++++++.+.+.++ +...+||+|++ ++++|+++..|++...... ..++.++|.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~d~~------------~~~~G~v~~~~l~~~~~~~--~~~~~~~~~~~~~ 66 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEE-NINHLPVVDED------------GRLVGIVTSWDISKAVARD--KKSVEDIMTRNVI 66 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhC-CCceEEEECCC------------CcEEEEEeHHHHHHHHhhC--ccCHHHhcCCCCe
Confidence 5678899999999999999887 78899999877 7999999999986432211 1348899999999
Q ss_pred EEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 509 YIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 509 tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
++.+++++.++++.|. ..+...+||+++ +..+|.++..+.
T Consensus 67 ~v~~~~~l~~~~~~~~-~~~~~~~~Vv~~~~~~~G~v~~~di 107 (110)
T cd04605 67 TATPDEPIDVAARKME-RHNISALPVVDAENRVIGIITSEDI 107 (110)
T ss_pred EECCCCcHHHHHHHHH-HhCCCEEeEECCCCcEEEEEEHHHh
Confidence 9999999999999995 466667888865 456777766654
|
Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.2e-08 Score=86.14 Aligned_cols=107 Identities=17% Similarity=0.127 Sum_probs=84.3
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc----ccccccccccccc
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS----SGIYNVYVEDFMV 504 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~----~~~~~~~V~dvM~ 504 (704)
+++.++.++++++++.+.+.++ +.+.+||+|++ ++++|+++..|+..... ......++.++|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~~~~------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~ 67 (114)
T cd04629 1 RNPVTFTPDMSVTEAVEKLLKS-KISGGPVVDDN------------GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMT 67 (114)
T ss_pred CCCeEeCCCCCHHHHHHHHHhc-CCCCccEECCC------------CeEEEEeehHHHHHHhhhhhhccCCCccHHHHhc
Confidence 3567889999999999999876 67889999877 78999999999864321 1224567899999
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
+++.++.+++++.++.+.|.+ .+...+||++++..+|.++..++
T Consensus 68 ~~~~~v~~~~~l~~~~~~~~~-~~~~~~~Vv~~~~~~Gvit~~di 111 (114)
T cd04629 68 TEVLTVSPDDSIVDLAQLMLK-AKPKRYPVVDDGKLVGQISRRDV 111 (114)
T ss_pred cCceEECCCCcHHHHHHHHHH-hCCCccCEEECCEEEEEEEHHHH
Confidence 999999999999999999965 44456777776666777766654
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-07 Score=83.28 Aligned_cols=102 Identities=14% Similarity=0.198 Sum_probs=83.9
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceE
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKY 509 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~t 509 (704)
++.++.++++++++.+.+.++ ++..+||+|++ ++++|+++..|++... ...++.++|.+++.+
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~-~~~~~~V~d~~------------~~~~G~v~~~~l~~~~----~~~~v~~~~~~~~~~ 65 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKET-GHSRFPVVDEK------------NKVVGIVTSKDVAGKD----PDTTIEKVMTKNPIT 65 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHc-CCCceeEECCC------------CeEEEEecHHHHhccc----ccccHHHHhcCCCeE
Confidence 577899999999999999887 77899999877 7999999998886432 245799999999999
Q ss_pred EeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 510 IWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 510 V~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
+.+++++.++.+.|. ......+||+++ ++.+|.++..++
T Consensus 66 v~~~~~l~~~~~~~~-~~~~~~~~Vv~~~~~~~G~it~~di 105 (108)
T cd04596 66 VNPKTSVASVAHMMI-WEGIEMLPVVDDNKKLLGIISRQDV 105 (108)
T ss_pred ECCCCCHHHHHHHHH-HcCCCeeeEEcCCCCEEEEEEHHHh
Confidence 999999999999995 455667888874 555776666553
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.8e-07 Score=81.37 Aligned_cols=101 Identities=17% Similarity=0.141 Sum_probs=82.7
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceE
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKY 509 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~t 509 (704)
++.++.++++++++++.+.++ +...+||+| + ++++|+++..|+.... ...++.++|.+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~d-~------------~~~~Giv~~~~l~~~~----~~~~~~~~~~~~~~~ 63 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKH-RIGGLPVVE-D------------GKLVGIITSRDVRRAH----PNRLVADAMTREVVT 63 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHc-CCCEEEEEE-C------------CEEEEEEehHHhhccc----ccCCHHHHccCCCEE
Confidence 567789999999999999877 778999997 4 5899999999987643 234688999999999
Q ss_pred EeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 510 IWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 510 V~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
+.+++++.++++.|. ..+.+.+||+++++.+|.++..++
T Consensus 64 v~~~~~l~~~~~~~~-~~~~~~~~Vv~~~~~~G~it~~~l 102 (105)
T cd04599 64 ISPEASLLEAKRLME-EKKIERLPVLRERKLVGIITKGTI 102 (105)
T ss_pred ECCCCCHHHHHHHHH-HcCCCEeeEEECCEEEEEEEHHHh
Confidence 999999999999995 456777888887666776666553
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=98.58 E-value=2e-07 Score=83.30 Aligned_cols=107 Identities=15% Similarity=0.074 Sum_probs=84.8
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCC--CcccccccccccccccC
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLP--SSSGIYNVYVEDFMVRD 506 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~--~~~~~~~~~V~dvM~~~ 506 (704)
+++.+++++++++++.+.+.++ +.+.+||+|++ +++|+++..|+... ........++.++|.++
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~-~~~~i~V~~~~-------------~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~ 66 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEH-RVSSLLVVDDG-------------RLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAP 66 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHc-CCCeEEEEECC-------------EEEEEEEhHHHHHHHhccCCCccCCHHHHhCCC
Confidence 3567889999999999999877 67899999754 79999999998642 22222346789999999
Q ss_pred ceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHh
Q psy6631 507 VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRRE 550 (704)
Q Consensus 507 v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~ 550 (704)
++.+.+++++.++.+.|.. .+...+|+++++..+|.++..++.
T Consensus 67 ~~~v~~~~~l~~~~~~~~~-~~~~~~~Vv~~~~~~Giit~~di~ 109 (111)
T cd04800 67 PITIPPDATVFEALLLMLE-RGIHHLPVVDDGRLVGVISATDLL 109 (111)
T ss_pred CeEECCCCcHHHHHHHHHH-cCCCeeeEeECCEEEEEEEHHHhh
Confidence 9999999999999999954 556678888766667877776643
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa |
| >cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.9e-08 Score=89.32 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=83.9
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc----------------
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS---------------- 492 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~---------------- 492 (704)
+++.++.++++++++.+.+.++ +++.+||+|++ ++++|+|+..|+......
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~Vvd~~------------~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~ 68 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDN-HISGLPVVDDD------------GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGA 68 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHc-CCCCceEECCC------------CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcch
Confidence 5677899999999999999987 78899999876 789999999998642111
Q ss_pred --------cccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHH
Q psy6631 493 --------GIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKR 548 (704)
Q Consensus 493 --------~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~ 548 (704)
.....++.++|.+++.++.+++++.++.+.|.+ .+...+||++++..+|.++..+
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~l~Vvd~g~~~Gvit~~d 131 (135)
T cd04586 69 EELAAAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEE-HRIKRVPVVRGGRLVGIVSRAD 131 (135)
T ss_pred HHHHHHHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHH-cCCCccCEecCCEEEEEEEhHh
Confidence 113467899999999999999999999999954 5555677777555667666655
|
BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.8e-07 Score=83.80 Aligned_cols=106 Identities=13% Similarity=0.135 Sum_probs=85.3
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCC-cccccccccccccccCce
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPS-SSGIYNVYVEDFMVRDVK 508 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~-~~~~~~~~V~dvM~~~v~ 508 (704)
++.++.++++++++.+.+.+. +...+||+|++ ++++|+++..|++... ...+....+.++|.++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~v~d~~------------~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 68 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEE-NVGSVVVVDPD------------ERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLV 68 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHc-CCCEEEEECCC------------CCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCE
Confidence 466789999999999999877 78899999877 7899999999986432 222345678899999999
Q ss_pred EEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 509 YIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 509 tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
++.+++++.++.+.|. ..+...+||+++ +...|.++..++
T Consensus 69 ~v~~~~~~~~~~~~~~-~~~~~~~~Vv~~~g~~~Gilt~~dl 109 (112)
T cd04624 69 TVDPDEPVAEAAKLMR-KNNIRHHLVVDKGGELVGVISIRDL 109 (112)
T ss_pred EECCCCcHHHHHHHHH-HcCccEEEEEcCCCcEEEEEEHHHh
Confidence 9999999999999995 456678888875 555776666653
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-07 Score=107.56 Aligned_cols=116 Identities=9% Similarity=0.042 Sum_probs=95.4
Q ss_pred ccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccccccc
Q psy6631 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVED 501 (704)
Q Consensus 422 ~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~d 501 (704)
++++.|.+++.++++++|++++.+++.++ +++.+||+|++. .+++++|+|+.+|+.... ..+.+|+|
T Consensus 97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~~~-~~s~vpVvd~~~---------~~gkLvGIVt~~DL~~~~---~~~~~V~d 163 (495)
T PTZ00314 97 RFENGFIMDPYVLSPNHTVADVLEIKEKK-GFSSILITVDGK---------VGGKLLGIVTSRDIDFVK---DKSTPVSE 163 (495)
T ss_pred ccccccccCCeecCCCCCHHHHHHHHHHc-CCcEEEEEeCCc---------cCCeEEEEEEHHHHhhcc---cCCCCHHH
Confidence 37788999999999999999999999887 899999998630 126899999999986433 23568999
Q ss_pred cccc--CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh
Q psy6631 502 FMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE 551 (704)
Q Consensus 502 vM~~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~ 551 (704)
+|++ +++++.+++++.|+.++|. ..+.+.+||+|+ +..++.+++.++..
T Consensus 164 iMt~~~~lvtv~~~~sl~eAl~lm~-e~~i~~LPVVd~~g~liGIIT~~DIl~ 215 (495)
T PTZ00314 164 VMTPREKLVVGNTPISLEEANEVLR-ESRKGKLPIVNDNGELVALVSRSDLKK 215 (495)
T ss_pred hhCCcCCceEeCCCCCHHHHHHHHH-HcCCCeEEEEcCCCcEEEEEEehHhhh
Confidence 9998 8999999999999999995 577888899875 55677777777654
|
|
| >cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-07 Score=85.67 Aligned_cols=106 Identities=18% Similarity=0.227 Sum_probs=84.8
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccc-----------ccccc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSG-----------IYNVY 498 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~-----------~~~~~ 498 (704)
++.++.++++++++.+.|.+. +.+.+||++++ ++++|+++..|++...... ....+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~V~~~~------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 68 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREH-RIRHLPVVNED------------GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVP 68 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHc-CcccccEECCC------------CCEEEEEEHHHHHHHhccccccccccccccccCcC
Confidence 466789999999999999987 78899999876 7899999999986432211 13567
Q ss_pred cccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 499 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 499 V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
+.++|.+++.++.+++++.++.+.|. ..+.+.+||+++ +..+|.++..++
T Consensus 69 v~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~Vv~~~~~~~Gvit~~dl 119 (122)
T cd04803 69 VAEVMKTDVLTVTPDTPLREAAEIMV-ENKIGCLPVVDDKGTLVGIITRSDF 119 (122)
T ss_pred HHHhhCCCCeEeCCCCcHHHHHHHHH-HcCCCeEEEEcCCCCEEEEEEHHHh
Confidence 89999999999999999999999995 455667888876 556776666553
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.9e-07 Score=81.04 Aligned_cols=104 Identities=15% Similarity=0.179 Sum_probs=83.7
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCce
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVK 508 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~ 508 (704)
+++..+.++++++++.+.+.++ ++..+||+|++ ++++|+++.+|+..... ...++.++|.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~d~~------------~~~~G~v~~~~l~~~~~---~~~~v~~~~~~~~~ 65 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEY-GISGLPVVDDD------------GKLVGIVTNRDLRFETD---LDKPVSEVMTPENL 65 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHc-CCceEEEEcCC------------CEEEEEEEhhHeeeccc---CCCCHHHhcccCce
Confidence 4567889999999999999877 78899999877 79999999999864322 34678999998888
Q ss_pred EEeC-CCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 509 YIWN-NMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 509 tV~~-d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
.+.+ ++++.++++.|.+ .+.+.+||+++ ++.+|.++..+.
T Consensus 66 ~~~~~~~~l~~~~~~~~~-~~~~~~~Vv~~~~~~~Gvi~~~di 107 (110)
T cd04601 66 LTTVEGTSLEEALELLHE-HKIEKLPVVDDEGKLKGLITVKDI 107 (110)
T ss_pred EEecCCCCHHHHHHHHHH-hCCCeeeEEcCCCCEEEEEEhhhh
Confidence 8888 9999999999954 55667888875 666776666653
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. |
| >cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.2e-07 Score=82.89 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=85.0
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCce
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVK 508 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~ 508 (704)
+++..++++++++++.+.+.+. +.+.+||++++ +++|+++..|++..........++.++|.+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~-------------~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~ 66 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTH-HIHGAPVVDDG-------------KLVGIVTLSDIAHAIARGLELAKVKDVMTKDVI 66 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHc-CCCEEEEeeCC-------------EEEEEEEHHHHHHHHhccccccCHHHHhcCCce
Confidence 3567889999999999999887 78899999754 799999999987654433334678999999999
Q ss_pred EEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 509 YIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 509 tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
++.+++++.|+.+.|. ..+.+.+||+++ ++..|.++..+.
T Consensus 67 ~v~~~~~~~~~~~~~~-~~~~~~~~V~~~~~~~~G~i~~~dl 107 (110)
T cd04588 67 TIDEDEQLYDAIRLMN-KHNVGRLIVTDDEGRPVGIITRTDI 107 (110)
T ss_pred EECCCCCHHHHHHHHH-hcCCCEEEEECCCCCEEEEEEhHHh
Confidence 9999999999999995 456677888876 555676666553
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. |
| >cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-07 Score=84.57 Aligned_cols=105 Identities=10% Similarity=0.065 Sum_probs=83.2
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccc--ccccccccccccCc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSG--IYNVYVEDFMVRDV 507 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~--~~~~~V~dvM~~~v 507 (704)
++..+.++++++++.+.|.+. +...+||+|++ ++++|+++.+|+....... ....++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~V~d~~------------~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 68 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIES-KHGSALVVDRD------------GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPL 68 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhC-CCcEEEEEcCC------------CCEEEEEEHHHHHHHHhcccccccccHHHhccCCc
Confidence 456789999999999999887 78899999877 7899999999987543222 23445889999999
Q ss_pred eEEeCCCCHHHHHHHhHhcCCCceeecccCC---CceEEeehHH
Q psy6631 508 KYIWNNMTYRDLKNLLKENRSLRVFPLVESS---GKFEQMEIKR 548 (704)
Q Consensus 508 ~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~---~~~~~i~~~~ 548 (704)
+++.+++++.++++.|. ..+...+||++++ +.+|.++..+
T Consensus 69 ~~v~~~~~l~~~l~~~~-~~~~~~~~Vvd~~~~~~~~Gvit~~d 111 (115)
T cd04593 69 LTVHPDEPLAHALDRMA-SRGLRQLPVVDRGNPGQVLGLLTREN 111 (115)
T ss_pred eEECCCCCHHHHHHHHH-HcCCceeeEEeCCCCCeEEEEEEhHH
Confidence 99999999999999995 4667778888753 4566555554
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d |
| >TIGR03520 GldE gliding motility-associated protein GldE | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-07 Score=104.94 Aligned_cols=122 Identities=12% Similarity=0.073 Sum_probs=99.4
Q ss_pred cccccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccc
Q psy6631 418 IYNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIY 495 (704)
Q Consensus 418 l~~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~ 495 (704)
+.+++|+|+|++ ++.+++.+++++|+.+.+.++ +++.+||++++ ..+++|+|+.+|++...+. .
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~-~~sR~PV~~~~-----------~d~ivGiv~~kDll~~~~~--~ 253 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIEN-GYSRIPVYKET-----------IDNITGVLYIKDLLPHLNK--K 253 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhC-CCCEEEEEcCC-----------CCceEEEEEHHHHHhHhcc--C
Confidence 456799999996 799999999999999999998 89999999864 1479999999999743222 2
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh-hcCC
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE-RQRR 555 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~-~~~~ 555 (704)
...++++|++ +.+|.+++++.++++.| +.++.+..+|+|+ ++..|.++..|... ++|.
T Consensus 254 ~~~l~~~~~~-~~~Vpe~~~l~~ll~~m-~~~~~~~aiVvDE~G~~~GiVT~eDileeivge 313 (408)
T TIGR03520 254 NFDWQSLLRE-PYFVPENKKLDDLLRDF-QEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGD 313 (408)
T ss_pred CCCHHHHcCC-CeEeCCCCcHHHHHHHH-HhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCC
Confidence 3457888874 78999999999999999 5678888999987 66688888877643 4453
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. |
| >cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.5e-07 Score=83.20 Aligned_cols=105 Identities=13% Similarity=0.120 Sum_probs=83.7
Q ss_pred eEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCC-CcccccccccccccccCceE
Q psy6631 431 VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLP-SSSGIYNVYVEDFMVRDVKY 509 (704)
Q Consensus 431 v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~-~~~~~~~~~V~dvM~~~v~t 509 (704)
..++.++++++++.+.+.+. +...+||+|++ ++++|+++.+|+... ........++.++|.+++.+
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~-~~~~~~v~d~~------------~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~ 70 (113)
T cd04607 4 QLLVSPDASILDALRKIDKN-ALRIVLVVDEN------------GRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPIT 70 (113)
T ss_pred ceEECCCCCHHHHHHHHHhc-CcCEEEEECCC------------CCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEE
Confidence 45689999999999999887 78899999877 789999999998642 22223346789999999999
Q ss_pred EeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 510 IWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 510 V~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
+.+++++.++++.|. ..+...+||+++ ++.+|.++..+.
T Consensus 71 v~~~~~l~~~~~~~~-~~~~~~~~Vv~~~~~~~Gvit~~di 110 (113)
T cd04607 71 AKVGSSREEILALMR-ERSIRHLPILDEEGRVVGLATLDDL 110 (113)
T ss_pred EcCCCCHHHHHHHHH-HCCCCEEEEECCCCCEEEEEEhHHh
Confidence 999999999999995 466777888874 555776666553
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-07 Score=106.18 Aligned_cols=112 Identities=15% Similarity=0.154 Sum_probs=94.6
Q ss_pred ccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccccccc
Q psy6631 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVED 501 (704)
Q Consensus 422 ~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~d 501 (704)
+++|+|.+++.++.++++++++.+.+.++ +++.+||+|++ ++++|+|+.+|+.... ....++.+
T Consensus 88 ~~~dim~~~~v~i~~~~tv~ea~~~m~~~-~~~~lpVvd~~------------g~lvGiVt~~DL~~~~---~~~~~V~d 151 (486)
T PRK05567 88 RSESGVVTDPVTVTPDTTLAEALALMARY-GISGVPVVDEN------------GKLVGIITNRDVRFET---DLSQPVSE 151 (486)
T ss_pred hhhhcccCCCeEeCCCCCHHHHHHHHHHh-CCCEEEEEccC------------CEEEEEEEHHHhhhcc---cCCCcHHH
Confidence 47899999999999999999999999988 89999999977 7999999999986432 23467999
Q ss_pred ccc-cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 502 FMV-RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 502 vM~-~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
+|+ ++++++.+++++.++.+.|. ..+...+||+|+ +..+|.++..++.
T Consensus 152 im~~~~~v~v~~~~sl~eal~~m~-~~~~~~lpVVDe~g~lvGiIT~~DLl 201 (486)
T PRK05567 152 VMTKERLVTVPEGTTLEEALELLH-EHRIEKLPVVDDNGRLKGLITVKDIE 201 (486)
T ss_pred HcCCCCCEEECCCCCHHHHHHHHH-HcCCCEEEEEcCCCcEEEEEEhHHhh
Confidence 999 78999999999999999995 567778999976 4556666666543
|
|
| >cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.1e-07 Score=81.34 Aligned_cols=101 Identities=10% Similarity=0.042 Sum_probs=82.9
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceE
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKY 509 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~t 509 (704)
++.+++++++++++.+.+.++ +...+||+|++ ++++|+++..|++.... .++.++|.+.+..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~-~~~~~~v~d~~------------g~~~Giv~~~dl~~~~~-----~~~~~~~~~~~~~ 63 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDS-DLRALTVVDAD------------GQPLGFVTRREAARASG-----GCCGDHAEPFKVT 63 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhc-CCCEEEEECCC------------CCEEEEEeHHHHHHhcc-----cchhhhcccCCEE
Confidence 567889999999999999877 67899999876 78999999999875321 3478999998899
Q ss_pred EeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 510 IWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 510 V~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
+.+++++.++++.|. ..+.+.+||+++ ++.+|.++..+.
T Consensus 64 ~~~~~~~~~~~~~~~-~~~~~~~~Vv~~~~~~~Gvi~~~~l 103 (106)
T cd04582 64 VSVDDDLRIVLSRMF-AHDMSWLPCVDEDGRYVGEVTQRSI 103 (106)
T ss_pred ECCCCCHHHHHHHHH-HCCCCeeeEECCCCcEEEEEEHHHh
Confidence 999999999999995 467788899876 456777766653
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi |
| >cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-07 Score=86.49 Aligned_cols=105 Identities=18% Similarity=0.115 Sum_probs=82.3
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc---------------ccc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS---------------SGI 494 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~---------------~~~ 494 (704)
++.++.++++++++.+++.+. +.+.+||+|++ ++++|+++..|+..... ...
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~-~~~~~~Vv~~~------------~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~ 68 (128)
T cd04632 2 DVITVREDDSVGKAINVLREH-GISRLPVVDDN------------GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERM 68 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHc-CCCEEEEECCC------------CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhh
Confidence 567889999999999999987 78999999987 78999999988863210 012
Q ss_pred cccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC---CCceEEeehHH
Q psy6631 495 YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES---SGKFEQMEIKR 548 (704)
Q Consensus 495 ~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~---~~~~~~i~~~~ 548 (704)
...++.++|.++++++.+++++.|+++.|.+. +.+.+||++. ++.+|.++..+
T Consensus 69 ~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~-~~~~~~V~~~~~~~~~~Gvit~~d 124 (128)
T cd04632 69 LDLPVYDAMSSPVITASPNDSVRDAVDRMLEN-DDSSVVVVTPDDDTKVVGILTKKD 124 (128)
T ss_pred ccCcHHHHhcCCCceECCCCcHHHHHHHHHhC-CCCeEeEeccCCCCcEEEEEEhHh
Confidence 23578899999999999999999999999653 4567777643 55677666655
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.1e-07 Score=83.42 Aligned_cols=106 Identities=14% Similarity=0.105 Sum_probs=84.5
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCC--CcccccccccccccccCc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLP--SSSGIYNVYVEDFMVRDV 507 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~--~~~~~~~~~V~dvM~~~v 507 (704)
++.++.+++++.++.+.+.+. +...+||+|++ ++++|+++.+|+... ........++.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvd~~------------~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~ 68 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTS-GSRALPVVDDK------------KRLVGIITRYDVLSYALESEELKDAKVREVMNSPV 68 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHc-CCceEeEEcCC------------CCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCc
Confidence 356789999999999999887 78899999876 789999999998753 222234567899999999
Q ss_pred eEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 508 KYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 508 ~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
.++.+++++.|+++.|. ..+...+|++++ ++.+|.++..++
T Consensus 69 ~~v~~~~~l~~~~~~~~-~~~~~~~~Vvd~~g~~~Gvvt~~dl 110 (113)
T cd04615 69 ITIDANDSIAKARWLMS-NNNISRLPVLDDKGKVGGIVTEDDI 110 (113)
T ss_pred eEECCCCcHHHHHHHHH-HcCCCeeeEECCCCeEEEEEEHHHh
Confidence 99999999999999994 455566788875 455776666654
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-07 Score=87.32 Aligned_cols=106 Identities=16% Similarity=0.254 Sum_probs=83.2
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccc--cc------------
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSG--IY------------ 495 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~--~~------------ 495 (704)
++.++.++++++++.+.+.+. +.+.+||+|++ ++++|+++..|+....... ..
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~-~~~~~~V~d~~------------~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 68 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTG-KISGVPVVDNE------------GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLD 68 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHh-CCCccceECCC------------CCEEEEEeHHHHHHHHhccCCcccccccccccccc
Confidence 467889999999999999887 78899999877 7899999999886432111 11
Q ss_pred --------ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 496 --------NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 496 --------~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
..++.++|.+++..+.+++++.++.+.|.+ .+...+||+++++.+|.++..++
T Consensus 69 ~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~-~~~~~~~V~~~~~~iGvit~~dl 129 (132)
T cd04636 69 ESKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSK-KNIKRLPVVDDGKLVGIISRGDI 129 (132)
T ss_pred hHHHHHHcCCCHHHhccCCceEECCCCcHHHHHHHHHH-CCCCeeEEEECCEEEEEEEHHHh
Confidence 127889999999999999999999999954 55667788877666676666653
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.54 E-value=2e-07 Score=83.84 Aligned_cols=104 Identities=16% Similarity=0.256 Sum_probs=82.3
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc----cc---cccccccc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS----GI---YNVYVEDF 502 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~----~~---~~~~V~dv 502 (704)
++.++++++++.++.+.+.++ +...+||+|++ ++++|+++..|+...... .. ...++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~V~d~~------------~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~ 68 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKH-GYSAIPVLDKE------------GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDV 68 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHC-CCceeeeECCC------------CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHH
Confidence 467899999999999999887 78899999876 789999999998643221 11 15679999
Q ss_pred cccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 503 MVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 503 M~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
|.+++.++.+++++.++++.|.+.+ .+||+++ ++.+|.++..+.
T Consensus 69 ~~~~~~~v~~~~~l~~a~~~~~~~~---~~~Vv~~~~~~~Gvit~~di 113 (116)
T cd04643 69 MNTDVPVIIDDADIEEILHLLIDQP---FLPVVDDDGIFIGIITRREI 113 (116)
T ss_pred hcCCCceecCCCCHHHHHHHHhcCC---ceeEEeCCCeEEEEEEHHHh
Confidence 9999999999999999999996533 4677765 556776666653
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.3e-07 Score=83.34 Aligned_cols=106 Identities=14% Similarity=0.115 Sum_probs=83.3
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc-----cc------cccc
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS-----SG------IYNV 497 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~-----~~------~~~~ 497 (704)
+++.+++++++++++.+.+.++ +++.+||+|++ ++++|+++..|++.... .. ....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~d~~------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 67 (122)
T cd04635 1 REPVTCTPDDPVSKVWDLMLES-GFTGLPVVQKA------------GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASP 67 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHc-CCCcccEECCC------------CcEEEEEEcHHHHhhccccccccchhhhhhhccC
Confidence 3567899999999999999877 78899999877 79999999999874311 11 2356
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHH
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKR 548 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~ 548 (704)
++.++|.+++..+.+++++.++.+.|. ..+...+||+++ ++.+|.++..+
T Consensus 68 ~~~~~~~~~~~~v~~~~~l~~~~~~~~-~~~~~~~~Vvd~~g~~~Gvit~~d 118 (122)
T cd04635 68 TVEKIMSTPVYSVTPDDSIATAVELML-EHDIGRLPVVNEKDQLVGIVDRHD 118 (122)
T ss_pred cHHHHhcCCCeeECCCCCHHHHHHHHH-HcCCCeeeEEcCCCcEEEEEEhHH
Confidence 788999999999999999999999995 455666777775 45566555544
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.1e-07 Score=84.60 Aligned_cols=106 Identities=13% Similarity=0.028 Sum_probs=82.6
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccc--c-----------
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIY--N----------- 496 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~--~----------- 496 (704)
++.+++++++++++.+.|.++ +.+.+||+|++ ++++|+++..|++........ .
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~-~~~~i~V~d~~------------~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 68 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKN-NISGLPVVDEK------------GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSE 68 (126)
T ss_pred CeEEECCCccHHHHHHHHHHh-CCCcccEECCC------------CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhh
Confidence 567899999999999999877 78899999877 789999999998754322221 1
Q ss_pred --cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 497 --VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 497 --~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
....+.|.+++.++.+++++.|+.+.|. ..+...+||+++ ++.+|.++..++
T Consensus 69 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~-~~~~~~l~Vvd~~~~~~Giit~~di 123 (126)
T cd04642 69 KFTDSDGVKSRPLITCTPSSTLKEVITKLV-ANKVHRVWVVDEEGKPIGVITLTDI 123 (126)
T ss_pred hcccccccccCCCeEECCCCcHHHHHHHHH-HhCCcEEEEECCCCCEEEEEEHHHH
Confidence 1233578888999999999999999995 456677888876 566777776653
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.52 E-value=2e-07 Score=85.89 Aligned_cols=106 Identities=14% Similarity=0.083 Sum_probs=82.3
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCC------c--cccccccccc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPS------S--SGIYNVYVED 501 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~------~--~~~~~~~V~d 501 (704)
++.++.++++++++++.|.++ +...+||+|++ ++++|+++..|+.... . ..+...++++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~-~~~~~~V~d~~------------~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~ 68 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKH-GVRLLLVVDSD------------DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVAD 68 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHc-CCcEEEEEcCC------------CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHH
Confidence 356789999999999999877 77899999977 7899999999987421 1 1234567999
Q ss_pred ccccCceEE------eCCCCHHHHHHHhHhcCCCceeecccCC--CceEEeehHHH
Q psy6631 502 FMVRDVKYI------WNNMTYRDLKNLLKENRSLRVFPLVESS--GKFEQMEIKRR 549 (704)
Q Consensus 502 vM~~~v~tV------~~d~sl~ea~~~m~~~~rl~Vvpvv~~~--~~~~~i~~~~~ 549 (704)
+|+++...+ .+++++.|+++.|. ..+.+.+||++++ ..+|.++..++
T Consensus 69 im~~~~~~~~~~~~~~~~~~l~~~l~~m~-~~~~~~lpVvd~~~~~~~G~it~~di 123 (126)
T cd04640 69 VMTPKEDLKALDLEELENASVGDVVETLK-ASGRQHALVVDREHHQIRGIISTSDI 123 (126)
T ss_pred hcCchhhhccccHHHhccCcHHHHHHHHH-HCCCceEEEEECCCCEEEEEEeHHHH
Confidence 998776544 37899999999995 5667788888764 55777776664
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.6e-07 Score=81.40 Aligned_cols=104 Identities=11% Similarity=0.111 Sum_probs=83.8
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccc-cccccccccccCce
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGI-YNVYVEDFMVRDVK 508 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~-~~~~V~dvM~~~v~ 508 (704)
++.++.++++++++.+.+.++ +...+||+|+ ++++|+++..|+......+. ...++.++|.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~~~-------------~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 67 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRER-RISSIVVVDD-------------GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLL 67 (111)
T ss_pred CceEECCCCcHHHHHHHHHHc-CCCEEEEeeC-------------CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCce
Confidence 456789999999999999887 6889999975 48999999999875443333 46779999999999
Q ss_pred EEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHH
Q psy6631 509 YIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKR 548 (704)
Q Consensus 509 tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~ 548 (704)
.+.+++++.++++.|. ..+.+.++|+++ +...|.++..+
T Consensus 68 ~~~~~~~l~~~l~~~~-~~~~~~~~Vv~~~~~~~Gvi~~~d 107 (111)
T cd04611 68 TVPADTSLYDARQLMR-EHGIRHLVVVDDDGELLGLLSQTD 107 (111)
T ss_pred EECCCCCHHHHHHHHH-HcCCeEEEEECCCCcEEEEEEhHH
Confidence 9999999999999995 466677888876 45567666554
|
PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB |
| >cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.5e-07 Score=81.86 Aligned_cols=105 Identities=13% Similarity=0.148 Sum_probs=82.5
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCC--c-cccccccccccccc
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPS--S-SGIYNVYVEDFMVR 505 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~--~-~~~~~~~V~dvM~~ 505 (704)
|++.+++++++++++.+.+.+. +.+.+||+|++ +++|+++..|++... . ......++.++|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~-------------~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~ 66 (112)
T cd04802 1 KNVITVDPDTTVYEAANIMTEN-NIGRLIVVDNE-------------KPVGIITERDLVKKVVSRNLKPREVPVGEVMST 66 (112)
T ss_pred CCcEEECCCCCHHHHHHHHHHC-CCCEEEEEECC-------------EEEEEEEHHHHHHHHhhccCCcccCCHHHhcCC
Confidence 3567789999999999999887 78899999854 799999999987532 1 12345678999999
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHH
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKR 548 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~ 548 (704)
+++.+.+++++.++++.|.+ .+...+||+++++.+|.++..+
T Consensus 67 ~~~~v~~~~~l~~~~~~~~~-~~~~~~~Vv~~~~~~Gvi~~~d 108 (112)
T cd04802 67 PLITIDPNASLNEAAKLMAK-HGIKRLPVVDDDELVGIVTTTD 108 (112)
T ss_pred CcEEECCCCCHHHHHHHHHH-cCCCeeEEeeCCEEEEEEEhhh
Confidence 99999999999999999954 5565678887655566665554
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.9e-07 Score=82.41 Aligned_cols=105 Identities=13% Similarity=0.204 Sum_probs=81.2
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc---ccccccccccccccC
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS---SGIYNVYVEDFMVRD 506 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~---~~~~~~~V~dvM~~~ 506 (704)
++.++.++++++++.+.+.++ +...++|.+ + ++++|+++..|++.... ..+...++.++|.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~v~~-~------------~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~ 67 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQ-DLGSLVVME-R------------GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPE 67 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHc-CCCeEEEee-C------------CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCC
Confidence 467789999999999999776 566666654 4 58999999999874322 123346799999999
Q ss_pred ceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 507 VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 507 v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
+.++.+++++.++++.|. ..+.+.+||+++++.+|.++..++
T Consensus 68 ~~~v~~~~~l~~a~~~m~-~~~~~~l~Vv~~~~~~Gvvt~~dl 109 (112)
T cd04625 68 PIVASPDDSIDEVRRLMV-ERHLRYLPVLDGGTLLGVISFHDV 109 (112)
T ss_pred CeEECCCCCHHHHHHHHH-HcCCCeeeEEECCEEEEEEEHHHh
Confidence 999999999999999995 455667788876666777776654
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-07 Score=88.85 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=73.3
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccc-c------------
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIY-N------------ 496 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~-~------------ 496 (704)
++.++.++++++++++.|.++ +...+||+|++ ++++|+|+..|++........ .
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~-~~~~~~VvD~~------------g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~ 68 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDE-KQSCVLVVDSD------------DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNT 68 (133)
T ss_pred CceEECCCCCHHHHHHHHHHc-CCCEEEEECCC------------CeEEEEEEHHHHHHHHhhccccccccchhhccccc
Confidence 567899999999999999877 78899999987 799999999998743221111 0
Q ss_pred ccccccc---------ccCceEEeCCCCHHHHHHHhHhcCCCceeecccCC
Q psy6631 497 VYVEDFM---------VRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 538 (704)
Q Consensus 497 ~~V~dvM---------~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~ 538 (704)
..+.++| +++++++.+++++.|+++.|. ..+.+.+||++++
T Consensus 69 ~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~-~~~~~~lPVvd~~ 118 (133)
T cd04592 69 CLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLME-AKGVKQLPVVKRG 118 (133)
T ss_pred ccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHH-HcCCCcCCEecCC
Confidence 1133454 577999999999999999995 4677777887753
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.2e-07 Score=103.68 Aligned_cols=118 Identities=15% Similarity=0.164 Sum_probs=96.6
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccc
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVE 500 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~ 500 (704)
.+.++.|.+++.++.++++++|+++.+.++ +++.+||+|++. ..++++|+|+.+|++... ....+++
T Consensus 80 k~~~~~~~~~~vtl~~~~tv~eal~~m~~~-~~s~lpVvd~~~---------~~~~lvGIVt~rDL~~~~---~~~~~V~ 146 (450)
T TIGR01302 80 KRAENGIISDPVTISPETTVADVLELMERK-GISGIPVVEDGD---------MTGKLVGIITKRDIRFVK---DKGKPVS 146 (450)
T ss_pred ccccCceecCceEeCCCCCHHHHHHHHHHc-CCCEEEEEeCCC---------CCCeEEEEEEHHHHhhhh---cCCCCHH
Confidence 457888999999999999999999999988 899999998650 114899999999996432 2356899
Q ss_pred cccc-cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhh
Q psy6631 501 DFMV-RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREER 552 (704)
Q Consensus 501 dvM~-~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~ 552 (704)
++|+ ++++++.+++++.++.+.|. .++.+.+||+|+ +..+|.++..++...
T Consensus 147 dvm~~~~~~~V~~~~sl~eal~~m~-~~~~~~lpVVDe~G~lvGiVT~~DIl~~ 199 (450)
T TIGR01302 147 EVMTREEVITVPEGIDLEEALKVLH-EHRIEKLPVVDKNGELVGLITMKDIVKR 199 (450)
T ss_pred HhhCCCCCEEECCCCcHHHHHHHHH-HcCCCeEEEEcCCCcEEEEEEhHHhhhc
Confidence 9999 59999999999999999994 577788899886 556777777776543
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.7e-07 Score=81.68 Aligned_cols=105 Identities=9% Similarity=-0.034 Sum_probs=83.7
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc--ccccccccccccccCc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS--SGIYNVYVEDFMVRDV 507 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~--~~~~~~~V~dvM~~~v 507 (704)
++.+++++++++++.+.+.+. +...+||+|++ +++|+++..|++.... ......++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~V~d~~-------------~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~ 67 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREH-GADALLVRDGD-------------PRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPL 67 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHc-CCCEEEEecCC-------------eEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCc
Confidence 466789999999999999877 77889999754 6899999988864321 1234567899999999
Q ss_pred eEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 508 KYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 508 ~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
..+.+++++.++++.|. ..+.+.+||+++++.+|.++..++
T Consensus 68 ~~v~~~~~l~~~~~~~~-~~~~~~~~Vv~~~~~~G~it~~dl 108 (111)
T cd04589 68 ITVDPDDFLFNALLLMT-RHRIHRVVVREGGEVVGVLEQTDL 108 (111)
T ss_pred EEECCCCcHHHHHHHHH-HhCccEEEEeeCCEEEEEEEhHHh
Confidence 99999999999999995 466778888877666776666553
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or |
| >cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.3e-07 Score=81.47 Aligned_cols=105 Identities=20% Similarity=0.263 Sum_probs=83.2
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccc------------cccc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSG------------IYNV 497 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~------------~~~~ 497 (704)
++.++.++++++++.+.+.+. +...+||+|++ +++|+++..|+....... ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~V~d~~-------------~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 67 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKEN-SIRRLPVVDRG-------------KLVGIVTDRDLKLASPSKATTLDIWELYYLLSKI 67 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhC-CcceeeEecCC-------------eEEEEEeHHHHHHhhhcccccccchhhhhhhccc
Confidence 467889999999999999887 67899999854 799999999987543211 1235
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
++.++|.++++++.+++++.++.+.|. ..+.+.+||+++ +..+|.++..++
T Consensus 68 ~~~~~~~~~~~~v~~~~~l~~~~~~~~-~~~~~~~~Vv~~~~~~~Gvvt~~di 119 (122)
T cd04585 68 KVSDIMTRDPITVSPDASVEEAAELML-ERKISGLPVVDDQGRLVGIITESDL 119 (122)
T ss_pred CHHHhccCCCeEeCCCCcHHHHHHHHH-HcCCCceeEECCCCcEEEEEEHHHh
Confidence 788999999999999999999999995 455667788876 566777666654
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i |
| >cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.2e-07 Score=79.09 Aligned_cols=92 Identities=11% Similarity=0.189 Sum_probs=75.3
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCce
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVK 508 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~ 508 (704)
+++.++.++++++++.+.|.++ +.+.+||+|++ ++++|+++..|+.... .+.
T Consensus 1 ~~~~~v~~~~~i~~a~~~~~~~-~~~~~~V~d~~------------~~~~Giv~~~dl~~~~---------------~~~ 52 (96)
T cd04614 1 RNVPTVWEETPLPVAVRIMELA-NVKALPVLDDD------------GKLSGIITERDLIAKS---------------EVV 52 (96)
T ss_pred CCccEeCCCCcHHHHHHHHHHc-CCCeEEEECCC------------CCEEEEEEHHHHhcCC---------------CcE
Confidence 3577899999999999999877 78899999877 7899999999986532 178
Q ss_pred EEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 509 YIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 509 tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
++.+++++.++.+.|. ..+...+||+++ ++.+|.++..+.
T Consensus 53 ~v~~~~~l~~a~~~m~-~~~~~~lpVv~~~~~~~Giit~~di 93 (96)
T cd04614 53 TATKRTTVSECAQKMK-RNRIEQIPIINGNDKLIGLLRDHDL 93 (96)
T ss_pred EecCCCCHHHHHHHHH-HhCCCeeeEECCCCcEEEEEEHHHh
Confidence 9999999999999995 467778888876 555676666553
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.4e-07 Score=83.59 Aligned_cols=108 Identities=18% Similarity=0.211 Sum_probs=84.8
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccc-------------c
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGI-------------Y 495 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~-------------~ 495 (704)
+++.++.+++++.++++.|.+. +...+||+|++ .++++|+|+..|+.....+.. .
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~-~~~~i~V~d~~-----------~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~ 68 (125)
T cd04631 1 KDVVTVPPTTPIMEAAKIMVRN-GFRRLPVVDEG-----------TGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAI 68 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHHc-CcccceeEeCC-----------CCEEEEEEEHHHHHHHhhccchhccccccccchhh
Confidence 3567889999999999999887 78899999863 168999999999864322111 2
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
..++.++|.++++++.+++++.++++.|. ..+.+.++|+++ ++.+|.++..++
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~-~~~~~~~~V~~~~~~~~Gvit~~di 122 (125)
T cd04631 69 NEPVRSIMTRNVITITPDDSIKDAAELML-EKRVGGLPVVDDDGKLVGIVTERDL 122 (125)
T ss_pred hcCHHHHhcCCceEeCCCCcHHHHHHHHH-HcCCceEEEEcCCCcEEEEEEHHHh
Confidence 35788999999999999999999999995 455667888876 566777766653
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.6e-07 Score=80.70 Aligned_cols=106 Identities=20% Similarity=0.212 Sum_probs=83.9
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccc-ccccccccccCc
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIY-NVYVEDFMVRDV 507 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~-~~~V~dvM~~~v 507 (704)
+++.++.++++++++.+.|.+. +.+.+||+|++ +++|+++..|+......... ...+.++|.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~-------------~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~ 66 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGE-RHRGYPVVDDG-------------RLVGIVTLADIRRVPAEGREATVLVGDVMTRDP 66 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHc-CCCcceEeeCC-------------eEEEEEEHHHHHHHHhcCcccccCHHHhccCCC
Confidence 3567899999999999999887 67899999754 79999999998754332221 136789999999
Q ss_pred eEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 508 KYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 508 ~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
.++.+++++.++++.|. ..+...+||.++ +..+|.++..++
T Consensus 67 ~~v~~~~~~~~~~~~~~-~~~~~~~~V~~~~~~~~G~it~~di 108 (111)
T cd04612 67 VTASPDETLRDALKRMA-ERDIGRLPVVDDSGRLVGIVSRSDL 108 (111)
T ss_pred eEECCCCCHHHHHHHHH-hCCCCeeeEEcCCCCEEEEEEHHHh
Confidence 99999999999999995 456667888875 666777766654
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an |
| >cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.3e-07 Score=80.92 Aligned_cols=106 Identities=10% Similarity=0.118 Sum_probs=82.4
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceE
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKY 509 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~t 509 (704)
++.++.++++++++++.+.+. +...+||+|+. .++++++|+++.+|+..... ...+++++|.++..+
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~-~~~~~~V~d~~---------~~~~~~~G~v~~~dl~~~~~---~~~~v~~~~~~~~~~ 69 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKK-GFSGIPVTEDG---------KSGGKLLGIVTSRDIDFLTD---SETPLSEVMTPREVL 69 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHc-CCCceEEeeCC---------CcCCEEEEEEEhHHhhhhhc---cCCCHHHhcCCCceE
Confidence 456789999999999999876 77899999862 00278999999988864322 235689999998888
Q ss_pred EeC--CCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 510 IWN--NMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 510 V~~--d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
+.. ++++.++++.|. ..+.+.+||+++ ++.+|.+++.+.
T Consensus 70 ~~~~~~~~l~~~l~~~~-~~~~~~~pVv~~~~~~~Gvit~~di 111 (114)
T cd04602 70 VVAPTGITLEEANEILR-ESKKGKLPIVNDDGELVALVTRSDL 111 (114)
T ss_pred EECCCCCCHHHHHHHHH-hcCCCceeEECCCCeEEEEEEHHHh
Confidence 877 999999999995 577778888875 556776666653
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos |
| >cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.1e-07 Score=79.87 Aligned_cols=106 Identities=18% Similarity=0.250 Sum_probs=82.7
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCC--Cccc-cccccccccccc
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLP--SSSG-IYNVYVEDFMVR 505 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~--~~~~-~~~~~V~dvM~~ 505 (704)
+++.++.++++++++.+.+.++ +.+.+||+|+ ++++|+++..|++.. .+.. ....++.++|.+
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~v~~~-------------~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 66 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREH-DVGALPVCEN-------------DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTR 66 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHc-CCCEEEEeeC-------------CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccC
Confidence 3567899999999999999887 7889999975 489999999987521 1112 222359999999
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
++.++.+++++.++.+.|. ..+...+||+++ ++.+|.++..++
T Consensus 67 ~~~~v~~~~~~~~~~~~~~-~~~~~~~~V~~~~~~~~G~it~~di 110 (113)
T cd04622 67 GVVTVTEDDDVDEAARLMR-EHQVRRLPVVDDDGRLVGIVSLGDL 110 (113)
T ss_pred CccEECCCCCHHHHHHHHH-HcCCCeeeEECCCCcEEEEEEHHHh
Confidence 9999999999999999994 466667788875 555776666654
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=98.45 E-value=6e-07 Score=79.69 Aligned_cols=103 Identities=16% Similarity=0.188 Sum_probs=82.8
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCce
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVK 508 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~ 508 (704)
+++..+.++.+++++.+.+.++ +...+||+|++ ++++|+++..|++.... ...++.++|.++++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~v~d~~------------~~~~G~v~~~dl~~~~~---~~~~v~~~~~~~~~ 65 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDK-KVDSLLVVDKD------------NKLLGIVSLESLEQAYK---EAKSLEDIMLEDVF 65 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHC-CCceEEEEcCC------------CcEEEEEEHHHHHHHhh---cCCcHhHhhcCCce
Confidence 3567789999999999999887 78899999876 78999999999865332 12468899999999
Q ss_pred EEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHH
Q psy6631 509 YIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKR 548 (704)
Q Consensus 509 tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~ 548 (704)
++++++++.++.+.|. ..+...+|++++ ++.+|.++..+
T Consensus 66 ~v~~~~~~~~~~~~~~-~~~~~~~~vv~~~g~~~Gvit~~~ 105 (109)
T cd04583 66 TVQPDASLRDVLGLVL-KRGPKYVPVVDEDGKLVGLITRSS 105 (109)
T ss_pred EECCCCcHHHHHHHHH-HcCCceeeEECCCCeEEEEEehHH
Confidence 9999999999999995 456667888875 45566666554
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz |
| >cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.9e-07 Score=82.53 Aligned_cols=100 Identities=19% Similarity=0.211 Sum_probs=80.5
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcC-CeeEEEeecCCCCCCCCcccccccccccccccCc
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYD-SIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDV 507 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~-~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v 507 (704)
.+..++.++++++++.+.+.+. +.+.+||+|+. . .++++|+++.+|+...... +|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~~~~----------~~~~~~~G~v~~~dl~~~~~~---------~m~~~~ 61 (105)
T cd04591 2 PLVVLLPEGMTVEDLESLLSTT-SHNGFPVVDST----------EESPRLVGYILRSQLVVALKN---------YIDPSP 61 (105)
T ss_pred CceEEecccccHHHHHHHHHhC-CCCCcceEcCC----------CCCCEEEEEEeHHHHHHHHHH---------hccCCC
Confidence 3567889999999999999887 67889999872 0 1789999999888543221 899999
Q ss_pred eEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 508 KYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 508 ~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
.++++++++.++.+.|. ..+...+||+++++.+|.+++.++
T Consensus 62 ~~v~~~~~l~~~~~~~~-~~~~~~~pVv~~~~~~Gvvt~~dl 102 (105)
T cd04591 62 FTVSPRTSLEKVHQLFR-KLGLRHLLVVDEGRLVGIITRKDL 102 (105)
T ss_pred ceECCCCcHHHHHHHHH-HcCCCEEEEEECCeEEEEEEhhhh
Confidence 99999999999999995 567778888877766777766654
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS |
| >cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.5e-07 Score=81.19 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=83.4
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc--cccccccccccccCc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS--GIYNVYVEDFMVRDV 507 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~--~~~~~~V~dvM~~~v 507 (704)
+..+++++++++++.+.+.+. +.+.+||+|++ ++++|+++..++...... .....++.++|.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~d~~------------~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~ 69 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRK-GLGMTAVVDED------------GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNP 69 (114)
T ss_pred cccccCCCCcHHHHHHHHHhc-CccEEEEEcCC------------CCEEEEechHHHHHHHhccCccccCCHHHhhccCC
Confidence 456689999999999999876 67899999877 789999998887643221 222357999999999
Q ss_pred eEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 508 KYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 508 ~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
.++.+++++.++++.|. ......+||+++ +..+|.++..++
T Consensus 70 ~~v~~~~~~~~~~~~~~-~~~~~~~~Vv~~~~~~iG~it~~di 111 (114)
T cd04604 70 KTIDPDALAAEALELME-ENKITALPVVDDNGRPVGVLHIHDL 111 (114)
T ss_pred eEECCCCcHHHHHHHHH-HcCCCEEEEECCCCCEEEEEEHHHh
Confidence 99999999999999995 466667888874 555776666553
|
These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct |
| >cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.7e-07 Score=82.07 Aligned_cols=105 Identities=20% Similarity=0.222 Sum_probs=83.9
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc-----------cccccc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS-----------GIYNVY 498 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~-----------~~~~~~ 498 (704)
++.+++++++++++.+.+.++ +.+.+||+|++ ++++|+++..|+...... .....+
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~-~~~~~~V~d~~------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 68 (121)
T cd04584 2 DVVTITPTTTIAEALELMREH-KIRHLPVVDEE------------GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMP 68 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHc-CCCcccEECCC------------CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcC
Confidence 467789999999999999877 78899999987 789999999988643210 233467
Q ss_pred cccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHH
Q psy6631 499 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKR 548 (704)
Q Consensus 499 V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~ 548 (704)
+.++|.++++++.+++++.++++.|. ..+...+||++++..+|.++..+
T Consensus 69 v~~~~~~~~~~i~~~~~l~~~~~~~~-~~~~~~~~V~~~~~~~Gvv~~~d 117 (121)
T cd04584 69 VKEIMTKDVITVHPLDTVEEAALLMR-EHRIGCLPVVEDGRLVGIITETD 117 (121)
T ss_pred HHHHhhCCCeEECCCCcHHHHHHHHH-HcCCCeEEEeeCCEEEEEEEHHH
Confidence 89999999999999999999999995 45566778877666677666654
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in |
| >cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.9e-07 Score=82.81 Aligned_cols=108 Identities=11% Similarity=0.032 Sum_probs=82.5
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccc-----------cccc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGI-----------YNVY 498 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~-----------~~~~ 498 (704)
++.++.+++++.++++.+.+. +...+||+|++ .++++|+|+..|++....... ....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~-~~~~~~V~d~~-----------~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 69 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSG-GIHRVAVTEEE-----------SGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLR 69 (123)
T ss_pred CceecCCCCCHHHHHHHHhhC-CcceEEEEeCC-----------CCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhh
Confidence 467789999999999999876 68899999863 157999999999864311110 1122
Q ss_pred cccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 499 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 499 V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
+.++|.+++.++.+++++.++++.|. ..+.+.+||+++ ++.+|.++..+++
T Consensus 70 ~~~~~~~~~~~v~~~~~l~~a~~~m~-~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTSDVISINGDQPLIDALHLMH-NEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred hcccCcCCceEeCCCCCHHHHHHHHH-HcCCceEEEECCCCcEEEEEeHHHhh
Confidence 34678999999999999999999995 477778999976 5567888777654
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea | Back alignment and domain information |
|---|
Probab=98.42 E-value=1e-06 Score=78.33 Aligned_cols=98 Identities=15% Similarity=0.153 Sum_probs=79.9
Q ss_pred EEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceEEe
Q psy6631 432 KYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIW 511 (704)
Q Consensus 432 ~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~tV~ 511 (704)
.++.++++++++++.+.+. +...+||+|+ ++++|+++..|+.... ..++.++|.++..++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~-~~~~~~V~d~-------------~~~~G~v~~~~l~~~~-----~~~~~~~~~~~~~~v~ 64 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIEN-DLLSLPVVDY-------------NKFLGAVYLKDIENAT-----YGDVVDYIVRGIPYVR 64 (104)
T ss_pred eEECCCCCHHHHHHHHHHc-CCcEEEEEEC-------------CEEEEEEEHHHHhhhc-----ccchhhhhhcCCcEEc
Confidence 4578999999999999887 7889999974 4799999998886432 2357889999999999
Q ss_pred CCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 512 NNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 512 ~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
+++++.|+++.|. ..+.+.+||+++++.+|.++..+.
T Consensus 65 ~~~~l~~a~~~~~-~~~~~~~~Vv~~~~~iGvit~~dl 101 (104)
T cd04594 65 LTSTAEEAWEVMM-KNKTRWCPVVDDGKFKGIVTLDSI 101 (104)
T ss_pred CCCCHHHHHHHHH-HcCcceEEEEECCEEEEEEEHHHh
Confidence 9999999999995 466677888887666777776653
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do |
| >cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.2e-07 Score=80.33 Aligned_cols=105 Identities=10% Similarity=0.097 Sum_probs=80.1
Q ss_pred ceEEecCCCCHHHHHHHHHhcCC-ccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc--cccccccccccccC
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRS-LRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS--GIYNVYVEDFMVRD 506 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~-~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~--~~~~~~V~dvM~~~ 506 (704)
++..++++++++++.+.+.++ + ...+||+| + ++++|+++..|++..... .....++.++|.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~-~------------~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~ 67 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQ-GDSSCVLVVE-K------------GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQP 67 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhc-CCCceEEEcC-C------------CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCC
Confidence 456789999999999999876 5 56677776 4 589999999998743222 12346789999999
Q ss_pred ceEEeCC--CCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 507 VKYIWNN--MTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 507 v~tV~~d--~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
++++.++ +++.++++.|. ..+...+||+++ +..+|.+++.+.
T Consensus 68 ~~~v~~~~~~~l~~a~~~~~-~~~~~~~pVvd~~~~~~Gvit~~dl 112 (115)
T cd04620 68 VVTLQESEIQDIFTALSLFR-QHQIRHLPVLDDQGQLIGLVTAESI 112 (115)
T ss_pred cEEEecccccCHHHHHHHHH-HhCCceEEEEcCCCCEEEEEEhHHh
Confidence 9999998 78999999995 466677888875 455676666553
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.4e-08 Score=111.16 Aligned_cols=183 Identities=12% Similarity=0.097 Sum_probs=109.3
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccc------
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGI------ 494 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~------ 494 (704)
.+|+|+|.+++.+++++++++++++.|.++ +.+.+||+|++ ++++|+|+..|+.....+.+
T Consensus 68 ~~V~dim~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVvd~~------------g~l~Givt~~di~~~~~~~~~~~~~~ 134 (546)
T PRK14869 68 PQVRDLEIDKPVTVSPDTSLKEAWNLMDEN-NVKTLPVVDEE------------GKLLGLVSLSDLARAYMDILDPEILS 134 (546)
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHc-CCCEEEEEcCC------------CEEEEEEEHHHHHHHHHhhcchhhhh
Confidence 689999999999999999999999999988 78999999977 79999999999863211100
Q ss_pred -cccc-----------------------------------cccccccC-ceEEeCCCCHHHHHHHhHhcCCCceeecccC
Q psy6631 495 -YNVY-----------------------------------VEDFMVRD-VKYIWNNMTYRDLKNLLKENRSLRVFPLVES 537 (704)
Q Consensus 495 -~~~~-----------------------------------V~dvM~~~-v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~ 537 (704)
...+ +.+.|.++ ++.+....+ ....+. .....++.+.+.
T Consensus 135 ~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d---~~~~ai-~~~~~~lIlt~g 210 (546)
T PRK14869 135 KSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRED---IQLAAI-EAGVRLLIITGG 210 (546)
T ss_pred hcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHH---HHHHHH-HcCCCEEEECCC
Confidence 0011 11123322 222211111 111111 233444444333
Q ss_pred CCceEEeehHHHhhhcCCCcccccccCc-hhhcCCCCCCCCCCCCCCCCCCCCCCccc--CccccCCCchhhhccccccc
Q psy6631 538 SGKFEQMEIKRREERQRRPSRFEVTPAP-DLLRGNPHGVSASSDNIPRTENLDGPQFC--PVFGCQPKKSILKKTNSFSL 614 (704)
Q Consensus 538 ~~~~~~i~~~~~~~~~~~~sr~~v~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~p~~si~k~~~~~~~ 614 (704)
... ++. ...+.+ .+...++..+ |..+. ....+ ...+..++|+ .+.++.|++++.++.+.|..
T Consensus 211 ~~~----~~~-v~~la~-~~~i~ii~t~~dt~~t------~~~l~---~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~ 275 (546)
T PRK14869 211 APV----SED-VLELAK-ENGVTVISTPYDTFTT------ARLIN---QSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLK 275 (546)
T ss_pred CCC----CHH-HHHHHH-hCCCeEEEecccHHHH------HHHhh---cCCCHHHhccCCCcEEECCCCcHHHHHHHHHh
Confidence 111 111 011111 1122233222 11111 00000 1124667786 57888999999999999988
Q ss_pred ccCCCCcCcccCCCCCcchHHHH
Q psy6631 615 KNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 615 ~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.++..+ ||||++|+++|++++
T Consensus 276 ~~~~~~--PVvd~~g~lvGiit~ 296 (546)
T PRK14869 276 SRYRSY--PVVDEDGKVVGVISR 296 (546)
T ss_pred cCCCce--EEEcCCCCEEEEEEH
Confidence 888877 999999999999998
|
|
| >cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.1e-07 Score=79.35 Aligned_cols=106 Identities=13% Similarity=0.173 Sum_probs=81.8
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceE
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKY 509 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~t 509 (704)
++.++.++++++++.+.|.+. +...+||++++ .++++|+++..|+...........++.++|. ++++
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~-~~~~~~v~~~~-----------~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~-~~~~ 68 (111)
T cd04590 2 DIVALDADDTLEEILELIAES-GHSRFPVYDGD-----------LDNIIGVVHVKDLLRALAEGEEDLDLRDLLR-PPLF 68 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhC-CCceEEEECCC-----------CceEEEEEEHHHHHHHHHcCCCcCCHHHHhc-CCee
Confidence 577899999999999999877 67899999753 1589999999998754332222245677664 6899
Q ss_pred EeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 510 IWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 510 V~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
+.+++++.++.+.|. ..+.+.+||+++ ++.+|.++..+.
T Consensus 69 v~~~~~l~~~~~~~~-~~~~~~~~Vv~~~~~~~Gvit~~di 108 (111)
T cd04590 69 VPESTPLDDLLEEMR-KERSHMAIVVDEYGGTAGLVTLEDI 108 (111)
T ss_pred cCCCCcHHHHHHHHH-hcCCcEEEEEECCCCEEEEeEHHHh
Confidence 999999999999995 567788998876 556776666553
|
CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, |
| >cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.3e-06 Score=79.30 Aligned_cols=105 Identities=18% Similarity=0.180 Sum_probs=81.9
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc------------ccccc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS------------GIYNV 497 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~------------~~~~~ 497 (704)
++..+.+++++.++.+.+.++ +...+||+|+ ++++|+++..|+...... .....
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~-~~~~i~V~~~-------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 67 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDH-DISRLPVIEG-------------GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNL 67 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHc-CCCeeEEEEC-------------CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhcc
Confidence 567889999999999999887 7889999984 489999999998643221 11345
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
++.++|.+++.++.+++++.++.+.|.+ .+...+||+++++.+|.++..++
T Consensus 68 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~~~~~~~Vv~~~~~~Gvi~~~dl 118 (121)
T cd04633 68 PVSDIMTRPVITIEPDTSVSDVASLMLE-NNIGGLPVVDDGKLVGIVTRTDI 118 (121)
T ss_pred CHHHHccCCceEECCCCcHHHHHHHHHH-cCCCcccEEECCEEEEEEEHHHh
Confidence 7889999999999999999999999954 44455677666666776666653
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.1e-07 Score=94.74 Aligned_cols=114 Identities=13% Similarity=0.147 Sum_probs=95.3
Q ss_pred ccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCC
Q psy6631 494 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPH 573 (704)
Q Consensus 494 ~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~ 573 (704)
.+..+|+++|++++.++.+|+++.|+++.|. .+++.-.||+|+++.+|.++-.+...... .
T Consensus 169 iPk~~V~~~~s~~~i~v~~d~tl~eaak~f~-~~~i~GaPVvd~dk~vGiit~~dI~~aia------------~------ 229 (294)
T COG2524 169 IPKEKVKNLMSKKLITVRPDDTLREAAKLFY-EKGIRGAPVVDDDKIVGIITLSDIAKAIA------------N------ 229 (294)
T ss_pred cCcchhhhhccCCceEecCCccHHHHHHHHH-HcCccCCceecCCceEEEEEHHHHHHHHH------------c------
Confidence 4567899999999999999999999999995 57888899999888888777776543321 0
Q ss_pred CCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 574 GVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.++-. ...++|. .+++...++.|+.|..+|+..+..++ -|+|+.|+++|++||
T Consensus 230 ------g~~~~---kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRL--lV~ds~gkpvGiITr 283 (294)
T COG2524 230 ------GNLDA---KVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRL--LVTDSNGKPVGIITR 283 (294)
T ss_pred ------CCccc---cHHHHhccCCceEcCchhHHHHHHHHHhcCcceE--EEEccCCcEEEEEeh
Confidence 11111 4678888 89999999999999999999999998 789999999999999
|
|
| >PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.1e-05 Score=88.20 Aligned_cols=186 Identities=17% Similarity=0.185 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHhhhcc---hhHHHHHHHHHHHHHHhhh-hhccccCCCCC
Q psy6631 165 ELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRN---KKMNAFLQKN---RFLYPGIVVLLATSVSFPL-GLGKYMAGDLN 237 (704)
Q Consensus 165 el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~---~~~~~~l~~~---~~l~p~l~gllvg~l~fP~-~~G~~~~g~l~ 237 (704)
.+...+++|+++|+.+.+|.+.+.+...+.-.. .........+ +++-|+++|++++.+.+-. ..+.-... .
T Consensus 4 ~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggll~g~~~~~~~~~~~~~~~--g 81 (418)
T PRK01610 4 RLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGSLVNAATNLSPWRRLLTPALGGLAAGLLLWGWQKFTQQRPH--A 81 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhhcccccchHHHHHHHHHHHHHHHHHHHHHcccccccCC--C
Confidence 456678999999999999999987765422110 0000001122 3455667788887664321 11110000 0
Q ss_pred cHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHH
Q psy6631 238 THDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIG 317 (704)
Q Consensus 238 ~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G 317 (704)
..+.++ ...+. +...+. ....|++.+.++.++|.+.|-=-|+.-+||++|..++
T Consensus 82 ~~~vi~-av~~~---------------------g~~~~~----~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~ 135 (418)
T PRK01610 82 PTDYME-ALQTD---------------------GQFDYA----ASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFA 135 (418)
T ss_pred cHHHHH-HHHcC---------------------CCCCcc----HHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH
Confidence 122222 21110 111111 2468999999999999999999999999999999999
Q ss_pred HHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHH-hCC--chhHHHHHHHHHHHHHHHhhc
Q psy6631 318 EIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEM-TGQ--ITHIIPVMIAVLISNAVAALL 391 (704)
Q Consensus 318 ~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~El-TG~--~~~~lPimia~~is~~va~~l 391 (704)
..+. +. .+--.+..+|+||=++++-+ |++.++..+|. .++ +..+.|+++++++++.+++.+
T Consensus 136 ~~~~---~~----------~~~r~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~~v~~~~ 200 (418)
T PRK01610 136 QRFT---PR----------QEWKLWIACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVALLTTNLL 200 (418)
T ss_pred HHhC---Ch----------HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8764 11 23456889999998888888 89999999997 444 456889999999999999876
|
|
| >cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-06 Score=77.58 Aligned_cols=98 Identities=16% Similarity=0.208 Sum_probs=78.1
Q ss_pred ecCCCCHHHHHHHHHhcCC-----ccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCce
Q psy6631 434 IWNNMTYRDLKNLLKENRS-----LRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVK 508 (704)
Q Consensus 434 v~~~~tl~ea~~~l~~~~~-----~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~ 508 (704)
+.++++++++++.+.++ + ...+||+|++ ++++|+++.+|++... .+.++.++|.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vvd~~------------~~~~G~v~~~~l~~~~----~~~~v~~~~~~~~~ 64 (109)
T cd04606 2 VREDWTVGEALEYLRRN-ADDPETIYYIYVVDEE------------GRLLGVVSLRDLLLAD----PDTPVSDIMDTDVI 64 (109)
T ss_pred ccccCcHHHHHHHHHhc-cCcccceeEEEEECCC------------CCEEEEEEHHHHhcCC----CcchHHHHhCCCCe
Confidence 57899999999999876 4 3679999876 7899999998887532 24578999999999
Q ss_pred EEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 509 YIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 509 tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
.+.+++++.++++.|. ..+...+||+++ ++.+|.++..++
T Consensus 65 ~i~~~~~~~~~~~~~~-~~~~~~~~Vv~~~~~~~Gvit~~dl 105 (109)
T cd04606 65 SVSADDDQEEVARLFE-KYDLLALPVVDEEGRLVGIITVDDV 105 (109)
T ss_pred EEcCCCCHHHHHHHHH-HcCCceeeeECCCCcEEEEEEhHHh
Confidence 9999999999999995 455667888874 555676666554
|
MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=98.33 E-value=2e-06 Score=76.88 Aligned_cols=104 Identities=12% Similarity=0.144 Sum_probs=80.0
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCC--Cccccc-ccccccccccC
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLP--SSSGIY-NVYVEDFMVRD 506 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~--~~~~~~-~~~V~dvM~~~ 506 (704)
++.++.++++++++.+.+.++ +.+.+||+++ ++++|+|+..|++.. ...... ..++.++|.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~V~~~-------------~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~ 67 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREK-RVSCVLVMDG-------------NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPN 67 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHc-CCCeEEEEEC-------------CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCC
Confidence 467789999999999999877 6788999974 479999999998631 111112 25789999999
Q ss_pred ceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHH
Q psy6631 507 VKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKR 548 (704)
Q Consensus 507 v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~ 548 (704)
+.++.+++++.++++.|.+ .+...+||+++ ++.+|.++..+
T Consensus 68 ~~~v~~~~~l~~~~~~~~~-~~~~~l~Vv~~~~~~~Gvvs~~d 109 (113)
T cd04587 68 PVCATSDTPVLEALHLMVQ-GKFRHLPVVDKSGQVVGLLDVTK 109 (113)
T ss_pred CeEEcCCCCHHHHHHHHHH-cCCCcccEECCCCCEEEEEEHHH
Confidence 9999999999999999954 55556677765 55567666554
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai |
| >cd01036 ClC_euk Chloride channel, ClC | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.2e-06 Score=93.82 Aligned_cols=190 Identities=16% Similarity=0.129 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH-HHHH--hhhc-chhHHHHHHHHHHHHH---HhhhhhccccCCCCCcHHHHHHh
Q psy6631 173 GVVCGFGGAGYVWSHRQYVLFMRRNK-KMNA--FLQK-NRFLYPGIVVLLATSV---SFPLGLGKYMAGDLNTHDQLSSL 245 (704)
Q Consensus 173 Gi~~Gl~g~lF~~~~~~~~~~~r~~~-~~~~--~l~~-~~~l~p~l~gllvg~l---~fP~~~G~~~~g~l~~~~~i~~l 245 (704)
|++.|+++.+|.+...+...++...- +.+. +... -+.+.+++.+++.+.+ ..|...|.+ .+++...
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsG-------Ip~v~~~ 73 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRIPGSYLLGYLMWVLWSVVLVLISSGICLYFAPQAAGSG-------IPEVMAY 73 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC-------HHHHHHH
Confidence 56778888888888777665433110 0000 0001 1234445554444433 246555543 3445544
Q ss_pred hhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcC
Q psy6631 246 FSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFP 325 (704)
Q Consensus 246 f~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p 325 (704)
.++.. .++...+ --++.|++.+.++.|+|.+.|--.|+.-+||++|..++.....+.-
T Consensus 74 l~g~~------------------~~~~l~~----~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~ 131 (416)
T cd01036 74 LNGVH------------------LPMYLSI----RTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLG 131 (416)
T ss_pred HcCCc------------------ccccccH----HHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccc
Confidence 43210 0011111 2356899999999999999999999999999999999997643210
Q ss_pred CCccCCC-ccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHhCCc---hhHHHHHHHHHHHHHHHhhc
Q psy6631 326 DGITHGK-FIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMTGQI---THIIPVMIAVLISNAVAALL 391 (704)
Q Consensus 326 ~~~~~~~-~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElTG~~---~~~lPimia~~is~~va~~l 391 (704)
-...... ..+..+--.+...|+||-++++-+ |++.++..+|.+..+ ..+.|.+++++++..+++.+
T Consensus 132 ~~~~~~~~~~~~~~~r~ll~aGaaAGlaAaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~ 202 (416)
T cd01036 132 CHVHLFQLFRNPRDRRDFLVAGAAAGVASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIY 202 (416)
T ss_pred cccchhhhccCHHHHHHHHHHHhhcchhhccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence 0000000 000124456888999999998888 899999999987542 46789999999999998765
|
These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function. |
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1e-06 Score=98.39 Aligned_cols=124 Identities=8% Similarity=0.025 Sum_probs=107.5
Q ss_pred ccccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCC--Cccccc
Q psy6631 418 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLP--SSSGIY 495 (704)
Q Consensus 418 l~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~--~~~~~~ 495 (704)
...-+|.++|+.+++++++..++.++.+.|.+. +.+..-|++++ +.++|+|+++|+... .+....
T Consensus 146 ~~~trv~~~~~~~~~~v~~~~~i~~aa~km~~~-gv~s~v~l~~~------------~~~~GIvT~~dl~~~v~~~g~~~ 212 (610)
T COG2905 146 FILTRVGEVKTLPAVTVSPQASIQDAARKMKDE-GVSSLVVLDDS------------GPLLGIVTRKDLRSRVIADGRSK 212 (610)
T ss_pred HHHHHHHHHhcCCCcccCccCcHHHHHHHHHhc-CCCeEEEEcCC------------CCccceeehHHHHHHHHhcCCCc
Confidence 345679999999999999999999999999998 78888888876 789999999999743 445567
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCC
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRR 555 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~ 555 (704)
..+|.++|+.++.+|.+.+-+.||.-.|. .+|+.-+||.++++.+|.++..|+..+-..
T Consensus 213 ~~~V~evmT~p~~svd~~~~~feAml~m~-r~~I~hl~V~e~gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 213 TQKVSEVMTSPVISVDRGDFLFEAMLMML-RNRIKHLPVTEDGQPLGILTLTDILRLFSQ 271 (610)
T ss_pred ccchhhhhccCceeecCcchHHHHHHHHH-HhCCceeeeecCCeeeEEeeHHHHHHhhCC
Confidence 78999999999999999999999999995 588999999999999998888887655543
|
|
| >cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.7e-06 Score=74.44 Aligned_cols=101 Identities=20% Similarity=0.237 Sum_probs=80.0
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCce
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVK 508 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~ 508 (704)
+++.+++.+.+++++.+.+.+. +...+||+|+ ++++|+++..|++... ....+.++|.+++.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~v~d~-------------~~~~g~v~~~~l~~~~----~~~~~~~~~~~~~~ 63 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKET-GHDGFPVVDN-------------GKVVGIVSARDLLGKD----PDETVEEIMSKDLV 63 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHc-CCCeeeEeEC-------------CEEEEEEEHHHhhccC----ccccHHHhCCCCCe
Confidence 5677899999999999999876 6778999974 4899999999987532 23468899999999
Q ss_pred EEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHH
Q psy6631 509 YIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKR 548 (704)
Q Consensus 509 tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~ 548 (704)
++.+++++.++++.|.+ .+...+||+++ +..+|.++..+
T Consensus 64 ~v~~~~~l~~~~~~~~~-~~~~~~~Vv~~~g~~~Gvi~~~d 103 (107)
T cd04610 64 VAVPEMDIMDAARVMFR-TGISKLPVVDENNNLVGIITNTD 103 (107)
T ss_pred EECCCCCHHHHHHHHHH-hCCCeEeEECCCCeEEEEEEHHH
Confidence 99999999999999954 44556777765 45567665554
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-06 Score=79.18 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=82.3
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc------------ccccc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS------------GIYNV 497 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~------------~~~~~ 497 (704)
++.++.++++++++.+.+.++ +...+||+|+ ++++|+++..|+...... .....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~d~-------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 67 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKH-KFHHLLVVED-------------NELVGVISDRDYLKAISPFLGTAGETEKDLATLNR 67 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhC-CCCEEEEEeC-------------CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHh
Confidence 467789999999999999887 7889999985 479999999998642110 01235
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
++.++|.++++.+.+++++.++++.|.+ .+...+|++++ +..+|.++..+.
T Consensus 68 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~~~~~~~vv~~~~~~~Gvit~~dl 119 (122)
T cd04637 68 RAHQIMTRDPITVSPDTPVDEASKLLLE-NSISCLPVVDENGQLIGIITWKDL 119 (122)
T ss_pred HHHHhhcCCCeeeCCCCcHHHHHHHHHH-cCCCeEeEECCCCCEEEEEEHHHh
Confidence 7899999999999999999999999954 55567788765 566777766654
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.28 E-value=2e-06 Score=75.62 Aligned_cols=105 Identities=20% Similarity=0.217 Sum_probs=82.3
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccc--cccccccccccCc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGI--YNVYVEDFMVRDV 507 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~--~~~~V~dvM~~~v 507 (704)
++.++.++++++++.+.+.++ +...+||++++ ++++|+++..|+........ ....+.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 68 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEH-GISGLPVVDDD------------GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDV 68 (113)
T ss_pred CceEecCCCCHHHHHHHHHhc-CCceEEEECCC------------CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCc
Confidence 466789999999999999887 68899999876 78999999999875433221 1122678999999
Q ss_pred eEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHH
Q psy6631 508 KYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKR 548 (704)
Q Consensus 508 ~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~ 548 (704)
..+.+++++.++.+.|. ..+...++++++ +..+|.++..+
T Consensus 69 ~~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~~~~G~i~~~d 109 (113)
T cd02205 69 VTVSPDTSLEEAAELML-EHGIRRLPVVDDEGRLVGIVTRSD 109 (113)
T ss_pred eecCCCcCHHHHHHHHH-HcCCCEEEEEcCCCcEEEEEEHHH
Confidence 99999999999999995 455677888876 55566666554
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali |
| >cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.8e-06 Score=81.77 Aligned_cols=106 Identities=18% Similarity=0.164 Sum_probs=81.6
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccc---------------
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSG--------------- 493 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~--------------- 493 (704)
+++.++.+++++.++.+.+.++ +...+||+|+ ++++|+++..|++......
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~Vvd~-------------~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~ 66 (143)
T cd04634 1 KNPITCNADDTISDAARLLREN-KISGAPVLDG-------------GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELI 66 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHc-CCCcceEeEC-------------CeEEEEecHHHHHHHHHhccCccccccCCcceee
Confidence 3567899999999999999987 7899999974 4799999998876321110
Q ss_pred -------------------ccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 494 -------------------IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 494 -------------------~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
....++.++|.++++++.+++++.++.+.|.+ .+...+||++++..+|.++..++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~-~~~~~~~Vv~~~~~~Gvvt~~dl 140 (143)
T cd04634 67 ELPLREFINWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVR-HKIKRLPVVEDGRLVGIVTRGDI 140 (143)
T ss_pred eccchheeehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHH-cCCCEEEEEECCEEEEEEEHHHh
Confidence 12456889999999999999999999999954 45556777766555676666553
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.6e-06 Score=74.66 Aligned_cols=103 Identities=14% Similarity=0.120 Sum_probs=78.7
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccc--cccccccccccCc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGI--YNVYVEDFMVRDV 507 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~--~~~~V~dvM~~~v 507 (704)
+..++.++++++++.+.+.++ +...+||+|++ +++|+++..|+........ ...++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~V~~~~-------------~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 67 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREY-GVSQLPVVDDG-------------RVVGSIDESDLLDALIEGKAKFSLPVREVMGEPL 67 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHc-CCceeeEeeCC-------------eeEEEEeHHHHHHHHhccccccCcCHHHHhcCCC
Confidence 456789999999999999987 78899999754 7999999999875432221 2467899999999
Q ss_pred eEEeCCCCHHHHHHHhHhcCCCceeeccc-CCCceEEeehHHH
Q psy6631 508 KYIWNNMTYRDLKNLLKENRSLRVFPLVE-SSGKFEQMEIKRR 549 (704)
Q Consensus 508 ~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~-~~~~~~~i~~~~~ 549 (704)
.++++++++.++.+.|.+ . .. +++++ +++.+|.++..+.
T Consensus 68 ~~v~~~~~l~~~~~~~~~-~-~~-~~vv~~~~~~~Gvvt~~di 107 (110)
T cd04609 68 PTVDPDAPIEELSELLDR-G-NV-AVVVDEGGKFVGIITRADL 107 (110)
T ss_pred ceeCCCCcHHHHHHHHHh-C-Cc-eeEEecCCeEEEEEeHHHh
Confidence 999999999999999965 2 23 45554 3555676666653
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote |
| >cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.5e-06 Score=73.49 Aligned_cols=102 Identities=21% Similarity=0.217 Sum_probs=80.5
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceE
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKY 509 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~t 509 (704)
+..++.++++++++.+.+.+. ++..+||++++ ++++|+++..+++.... ...+.++|.+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~------------~~~~g~v~~~~l~~~~~----~~~~~~~~~~~~~~ 64 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEY-KVSGVPVVKKS------------GELVGIITRKDLLRNPE----EEQLALLMTRDPPT 64 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHc-CCCeEEEEcCC------------CcEEEEEEHHHHHhccc----cchHHHHhcCCCce
Confidence 456788999999999999877 67899999876 78999999888864321 23578889999999
Q ss_pred EeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 510 IWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 510 V~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
+.+++++.++.+.|.+ .+...+||+++++.+|.++..+.
T Consensus 65 v~~~~~l~~~~~~~~~-~~~~~~~Vvd~~~~~G~it~~d~ 103 (106)
T cd04638 65 VSPDDDVKEAAKLMVE-NNIRRVPVVDDGKLVGIVTVADI 103 (106)
T ss_pred ECCCCCHHHHHHHHHH-cCCCEEEEEECCEEEEEEEHHHh
Confidence 9999999999999954 55556777766555676665543
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.1e-07 Score=97.47 Aligned_cols=117 Identities=11% Similarity=0.026 Sum_probs=89.3
Q ss_pred ccccccccccC--ceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCC
Q psy6631 496 NVYVEDFMVRD--VKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNP 572 (704)
Q Consensus 496 ~~~V~dvM~~~--v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~ 572 (704)
..+|+|+|+++ ++++++++++.|+++.|. ......+||+|+ ++.+|.++..++.........
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~-~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~-------------- 260 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELS-RTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGA-------------- 260 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHH-HcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCC--------------
Confidence 57899999998 999999999999999994 455668888875 567888887775432210000
Q ss_pred CCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH---HHHH
Q psy6631 573 HGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR---IRMA 641 (704)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr---~r~a 641 (704)
. +.+..++|. ++..+.|++++.++.+.|...+...+ ||||++|+++|+|++ +|++
T Consensus 261 ----~--------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVvd~~~~lvGvIt~~di~~~~ 319 (321)
T PRK11543 261 ----L--------TTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAA--PVVDENGKLTGAINLQDFYQAG 319 (321)
T ss_pred ----c--------CCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEE--EEEcCCCeEEEEEEHHHHHhcc
Confidence 0 002335555 66678999999999999999999887 999999999999998 5554
|
|
| >cd01033 ClC_like Putative ClC chloride channel | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.8e-05 Score=85.44 Aligned_cols=175 Identities=17% Similarity=0.134 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHhhh---cchhHHHHHHHHHHHHHHh-hhhhccccCCCCCcHHHHHHh
Q psy6631 173 GVVCGFGGAGYVWSHRQYVLFMRRNK---KMNAFLQ---KNRFLYPGIVVLLATSVSF-PLGLGKYMAGDLNTHDQLSSL 245 (704)
Q Consensus 173 Gi~~Gl~g~lF~~~~~~~~~~~r~~~---~~~~~l~---~~~~l~p~l~gllvg~l~f-P~~~G~~~~g~l~~~~~i~~l 245 (704)
|+++|+.+.+|.+..++...++.... +...... ..+++-|.+++++++++.+ +...|.+ -.++.+.
T Consensus 1 G~~~gl~a~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ggl~~~l~~~~~~~~g~g-------i~~v~~~ 73 (388)
T cd01033 1 GVGAGLGGGLLTLLLHGVQHLAFGYSEGSFLTGVAAVSPIRRALSLTVGGLIAGLGWYLLRRKGKK-------LVSIKQA 73 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccccchhhhccCChHHHHHHHHHHHHHHHHHHHHHhccCCC-------cccHHHH
Confidence 68899999999999988776543211 0001111 1345556777888776643 2223332 1223222
Q ss_pred hhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcC
Q psy6631 246 FSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFP 325 (704)
Q Consensus 246 f~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p 325 (704)
.++. ..... .-.+.|++.+.+|.|+|.+.|-=-|+.-+||++|..++..++. +
T Consensus 74 ~~~~---------------------~~~~~----~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~~~~~--~ 126 (388)
T cd01033 74 VRGK---------------------KRMPF----WETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSDWLGL--T 126 (388)
T ss_pred hcCC---------------------CCCCH----HHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHHHhCC--C
Confidence 2211 00111 1234699999999999999999999999999999999887532 1
Q ss_pred CCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHhC---CchhHHHHHHHHHHHHHHHhhc
Q psy6631 326 DGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMTG---QITHIIPVMIAVLISNAVAALL 391 (704)
Q Consensus 326 ~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElTG---~~~~~lPimia~~is~~va~~l 391 (704)
..+--....+|++|=++++-+ |++.++..+|... .+..+.|+++++++|+.+++.+
T Consensus 127 ----------~~~~r~li~~GaaAGlaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~ 186 (388)
T cd01033 127 ----------VADRRLLVACAAGAGLAAVYNVPLAGALFALEILLRTISLRSVVAALATSAIAAAVASLL 186 (388)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence 123446788899998888888 8999999999864 3556889999999999999865
|
Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. |
| >PF00571 CBS: CBS domain CBS domain web page | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.8e-07 Score=70.31 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=48.6
Q ss_pred cccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 423 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 423 V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
|+|+|++++.++++++++.++.+.|.++ +.+.+||+|++ ++++|+|+.+|++
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~V~d~~------------~~~~G~is~~dl~ 52 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKN-GISRLPVVDED------------GKLVGIISRSDLL 52 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHH-TSSEEEEESTT------------SBEEEEEEHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHc-CCcEEEEEecC------------CEEEEEEEHHHHH
Confidence 6899999999999999999999999999 89999999887 8999999988874
|
Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A .... |
| >COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.4e-06 Score=93.62 Aligned_cols=116 Identities=13% Similarity=0.161 Sum_probs=96.6
Q ss_pred ccccccccceEEecCCCCHHHHHHHHHhcCC----ccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccc
Q psy6631 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRS----LRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNV 497 (704)
Q Consensus 422 ~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~----~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~ 497 (704)
+++.+|+.+.+.+++++|++++++.+++..+ ...+.|||.+ ++++|+++.++++... .+.
T Consensus 133 taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~------------~~L~Gvvsl~~Ll~a~----~~~ 196 (451)
T COG2239 133 TAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK------------GKLLGVVSLRDLLTAE----PDE 196 (451)
T ss_pred hhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc------------cceEEEeeHHHHhcCC----cHh
Confidence 5999999999999999999999999996422 3468899988 7999999999997654 366
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcC
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQR 554 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~ 554 (704)
+++++|.+++..|.++++.+|+++.+. ...+..+||+|+ ++.+|.++..+.....+
T Consensus 197 ~i~~im~~~~~~V~~~~dqeevA~~~~-~ydl~a~PVVd~~~~LiG~itiDDiidvi~ 253 (451)
T COG2239 197 LLKDLMEDDVVSVLADDDQEEVARLFE-KYDLLAVPVVDEDNRLIGIITIDDIIDVIE 253 (451)
T ss_pred HHHHHhcccceeecccCCHHHHHHHHH-HhCCeecceECCCCceeeeeeHHHHHHHHH
Confidence 899999999999999999999999995 455669999987 56688777766544443
|
|
| >cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.7e-06 Score=74.79 Aligned_cols=107 Identities=13% Similarity=0.031 Sum_probs=79.0
Q ss_pred cceEEecCCCCHHHHHHHHHhcCC-ccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc-----cccccccccc
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRS-LRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS-----GIYNVYVEDF 502 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~-~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~-----~~~~~~V~dv 502 (704)
+++.++.++++++++.+.+.+. + +..+||+|+ ++++|+++..|+...... ...+.++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Vvd~-------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~ 66 (119)
T cd04598 1 RPAPTVSPDTTVNDVLERFERD-PDLSALAVVDD-------------GRPVGLIMREALMELLSTPYGRALYGKKPVSEV 66 (119)
T ss_pred CCcCccCCCCcHHHHHHHHHhC-CCccEEEEEEC-------------CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHh
Confidence 3566789999999999999876 5 789999985 379999999888632111 1234679999
Q ss_pred cccCceEEeCCCCHHHHHHHhHhcC--CCceeecc-cCCCceEEeehHHH
Q psy6631 503 MVRDVKYIWNNMTYRDLKNLLKENR--SLRVFPLV-ESSGKFEQMEIKRR 549 (704)
Q Consensus 503 M~~~v~tV~~d~sl~ea~~~m~~~~--rl~Vvpvv-~~~~~~~~i~~~~~ 549 (704)
|.+++.++.+++++.++.+.|.+.+ ++...+++ ++++.+|.++..+.
T Consensus 67 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di 116 (119)
T cd04598 67 MDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDL 116 (119)
T ss_pred cCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHH
Confidence 9999999999999999999996532 22333444 44556776666553
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PRK10892 D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.1e-06 Score=93.06 Aligned_cols=114 Identities=8% Similarity=0.004 Sum_probs=86.8
Q ss_pred ccccccccccc--CceEEeCCCCHHHHHHHhHhcCCCceeeccc-CCCceEEeehHHHhhhcCCCcccccccCchhhcCC
Q psy6631 495 YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVE-SSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGN 571 (704)
Q Consensus 495 ~~~~V~dvM~~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~-~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~ 571 (704)
...+|+|+|++ +++++.+++++.|+++.|.+ .+...++|++ +++.+|.+++.+........
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~-~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~--------------- 263 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITR-KNLGMTVICDDNMKIEGIFTDGDLRRVFDMG--------------- 263 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHh-cCCCeEEEEcCCCcEEEEEecHHHHHHHhcC---------------
Confidence 45679999997 89999999999999999954 4456777766 46778888888764321100
Q ss_pred CCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 572 PHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
...+ ..+..++|+ ++.++.|++++.++...|...+..++ ||++ .|+++|+++|
T Consensus 264 --------~~~~--~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVv~-~~~lvGiit~ 317 (326)
T PRK10892 264 --------IDLR--QASIADVMTPGGIRVRPGILAVDALNLMQSRHITSV--LVAD-GDHLLGVLHM 317 (326)
T ss_pred --------CCcc--cCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEE--EEee-CCEEEEEEEh
Confidence 0000 013556777 78889999999999999999999887 9997 5899999998
|
|
| >cd03684 ClC_3_like ClC-3-like chloride channel proteins | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00012 Score=82.98 Aligned_cols=176 Identities=13% Similarity=0.076 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHHHHHHHHHHHHHH---hhhhhccccCCCCCcHHHHHHhhhcC
Q psy6631 173 GVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSVS---FPLGLGKYMAGDLNTHDQLSSLFSNF 249 (704)
Q Consensus 173 Gi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~p~l~gllvg~l~---fP~~~G~~~~g~l~~~~~i~~lf~~~ 249 (704)
|++.|+++.++.+...|....+... . .+ .-+.+.+++++++++.+. .|..-|.+ -.++....++.
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~--~-~~--~~~~~~~~~~~~i~~~l~~~~~p~a~GsG-------Ip~v~~~l~g~ 68 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGY--C-NY--IIYVLLALLFAFIAVLLVKVVAPYAAGSG-------IPEIKTILSGF 68 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhH--H-HH--HHHHHHHHHHHHHHHHHHHhcCccccCCC-------HHHHHHHHcCc
Confidence 6888999999988887765443311 0 00 012233344555555442 35555543 45555444431
Q ss_pred ccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCcc
Q psy6631 250 TWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGIT 329 (704)
Q Consensus 250 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~ 329 (704)
. . ++...+. -.+.|++.+.++.++|.+-|-=-|+.-+||++|..++.++..+-.+
T Consensus 69 ~------~------------~~~~~~~----~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~~~~~~~~--- 123 (445)
T cd03684 69 I------I------------RGFLGKW----TLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRLFPKYRRN--- 123 (445)
T ss_pred c------c------------cccccHH----HHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHHHHHhccC---
Confidence 0 0 0111122 2568999999999999999999999999999999999876532111
Q ss_pred CCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHh-CC--chhHHHHHHHHHHHHHHHhhc
Q psy6631 330 HGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMT-GQ--ITHIIPVMIAVLISNAVAALL 391 (704)
Q Consensus 330 ~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElT-G~--~~~~lPimia~~is~~va~~l 391 (704)
..+--....+|+||=++++-+ |+..++..+|.. .. ...++|.++++++|+.+++.+
T Consensus 124 ------~~~~r~li~~GaaAGlaAaF~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~ 183 (445)
T cd03684 124 ------EAKRREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSL 183 (445)
T ss_pred ------HHHHHHHHHHHHhhhhHHhcCCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHh
Confidence 123345678899998888887 899999999854 43 346789999999999988865
|
This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn |
| >cd03683 ClC_1_like ClC-1-like chloride channel proteins | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.4e-05 Score=84.64 Aligned_cols=190 Identities=14% Similarity=0.089 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHH--hhh-cchhHHHHHHHHHHHHHH---hhhhhccccCCCCCcH
Q psy6631 167 TVFALIGVVCGFGGAGYVWSHRQYVLFMRRNK-KMNA--FLQ-KNRFLYPGIVVLLATSVS---FPLGLGKYMAGDLNTH 239 (704)
Q Consensus 167 ~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~-~~~~--~l~-~~~~l~p~l~gllvg~l~---fP~~~G~~~~g~l~~~ 239 (704)
...+++|++.|+++.+|....++...++...- .... +.. ..+.+.|++++++.+.+. .|..-|.+ -
T Consensus 3 ~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsG-------I 75 (426)
T cd03683 3 LFLALLGILMALISIAMDFAVEKLLNARRWLYSLLTGNSLLQYLVWVAYPVALVLFSALFCKYISPQAVGSG-------I 75 (426)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCC-------H
Confidence 45679999999999999998887765443210 0000 000 112344555555555442 35555543 3
Q ss_pred HHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHH
Q psy6631 240 DQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEI 319 (704)
Q Consensus 240 ~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~ 319 (704)
.++....++.. .++...+ --+..|++.+.++.|+|.+-|-=-|+.-+||++|..++..
T Consensus 76 p~v~~~l~g~~------------------~~~~l~~----r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~ 133 (426)
T cd03683 76 PEMKTILRGVV------------------LPEYLTF----KTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKL 133 (426)
T ss_pred HHHHHHHcCCC------------------ccccccH----HHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhh
Confidence 44544443210 0011112 2256899999999999999999999999999999999987
Q ss_pred HHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHhCC---chhHHHHHHHHHHHHHHHhhc
Q psy6631 320 IFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMTGQ---ITHIIPVMIAVLISNAVAALL 391 (704)
Q Consensus 320 ~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElTG~---~~~~lPimia~~is~~va~~l 391 (704)
.....-.. .+...--.....|+||=++++-+ |+..++..+|.... ...+.|.+++++++..+++.+
T Consensus 134 ~~~~~~~~------~~~~~rr~Li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~~~ 203 (426)
T cd03683 134 TTFFSGIY------ENESRRMEMLAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRLL 203 (426)
T ss_pred cccccccc------cCHHHHHHHHHhHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 64210000 00011224778888888888877 89999999997543 346679999999998877653
|
This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia |
| >PRK11573 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.6e-05 Score=87.31 Aligned_cols=125 Identities=13% Similarity=0.028 Sum_probs=95.5
Q ss_pred cccccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccc-
Q psy6631 418 IYNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGI- 494 (704)
Q Consensus 418 l~~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~- 494 (704)
+.+.+|+|+|++ ++.+++.+++++|+.+.+.++ +++.+||.+++. ..++|+++.+|++.....+.
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~-~~SR~PVy~~~~-----------D~IiGiv~~kDll~~~~~~~~ 251 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHS-PHGRIVLYRDSL-----------DDAISMLRVREAYRLMTEKKE 251 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhC-CCceEEEEcCCC-----------CceEEEEEHHHHHHHhhccCc
Confidence 346789999985 699999999999999999988 899999997651 47999999999974322111
Q ss_pred -cccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH-hhhcCCC
Q psy6631 495 -YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR-EERQRRP 556 (704)
Q Consensus 495 -~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~-~~~~~~~ 556 (704)
....+.++|+ ++..|.+++++.++++.| +.++.+..-|+|+ ++..|.++-.|+ +.++|.+
T Consensus 252 ~~~~~l~~~~r-~~~~Vpe~~~l~~lL~~~-~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei 314 (413)
T PRK11573 252 FTKENMLRAAD-EIYFVPEGTPLSTQLVKF-QRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDF 314 (413)
T ss_pred CCHHHHHhhcc-CCeEeCCCCcHHHHHHHH-HhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCC
Confidence 1123345554 578999999999999999 5677777778877 566787777776 4466655
|
|
| >COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00047 Score=78.05 Aligned_cols=100 Identities=21% Similarity=0.271 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHH
Q psy6631 282 MLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISV 360 (704)
Q Consensus 282 ~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~ 360 (704)
..+|++.+.++.++|.+.|-=-|+.-+||.+|..++..+..- ..+--...+.|+||=+|++.+ |++.
T Consensus 113 ~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~~l~~~------------~~~~r~Ll~~GaAaGlaaaF~aPlag 180 (443)
T COG0038 113 LPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGRLLKLS------------REDRRILLAAGAAAGLAAAFNAPLAG 180 (443)
T ss_pred HHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHhCCC------------HHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 345999999999999999999999999999999999987421 124456788899999999988 8999
Q ss_pred HHHHHHHhCC----chhHHHHHHHHHHHHHHHhhcCC
Q psy6631 361 SVIMFEMTGQ----ITHIIPVMIAVLISNAVAALLQP 393 (704)
Q Consensus 361 ~viv~ElTG~----~~~~lPimia~~is~~va~~l~~ 393 (704)
+++++|.-.. +..+.|+++++++|+.+.+.++.
T Consensus 181 vlF~~E~l~~~~~~~~~l~p~~vaa~va~~v~~~~~~ 217 (443)
T COG0038 181 ALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGLFGG 217 (443)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999997543 46789999999999999997753
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.9e-06 Score=93.80 Aligned_cols=110 Identities=11% Similarity=0.016 Sum_probs=87.5
Q ss_pred ccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCC
Q psy6631 494 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNP 572 (704)
Q Consensus 494 ~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~ 572 (704)
....++.++|.+++.++.+++++.|+++.|. ..+...+||+|+ ++.+|.++++++.... +
T Consensus 86 l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~-~~~~s~l~VVD~~gklvGIVT~rDL~~~~---------~--------- 146 (479)
T PRK07807 86 VAWVKSRDLVFDTPVTLSPDDTVGDALALLP-KRAHGAVVVVDEEGRPVGVVTEADCAGVD---------R--------- 146 (479)
T ss_pred HhhcccccccccCCeEECCCCCHHHHHHHHH-hcCCceEEEECCCCeEEEEEeHHHHhcCc---------c---------
Confidence 3457889999999999999999999999994 466678888875 4567888777752110 0
Q ss_pred CCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 573 HGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
. .+..++|+ .+.+..|++++.++...|...+...+ ||||++|+++|+||+
T Consensus 147 -------~------~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~L--PVVD~~g~lvGIIT~ 197 (479)
T PRK07807 147 -------F------TQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLA--PVVDADGRLVGVLTR 197 (479)
T ss_pred -------C------CCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEE--EEEcCCCeEEEEEEH
Confidence 0 02345566 77888999999999999999988887 999999999999998
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.2e-06 Score=93.03 Aligned_cols=110 Identities=11% Similarity=-0.011 Sum_probs=88.1
Q ss_pred ccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCC
Q psy6631 494 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPH 573 (704)
Q Consensus 494 ~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~ 573 (704)
....++.++|.+++.++.+++++.|+++.|. ..+...++|+|+++.+|.++++++... . .
T Consensus 85 v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~-~~~~~~~vVvD~gklvGIVT~rDL~~~---~------~---------- 144 (475)
T TIGR01303 85 VAFVKSRDLVLDTPITLAPHDTVSDAMALIH-KRAHGAAVVILEDRPVGLVTDSDLLGV---D------R---------- 144 (475)
T ss_pred HhhcchhhccccCCeEECCCCCHHHHHHHHH-hcCCeEEEEEECCEEEEEEEHHHhhcC---C------C----------
Confidence 3467788999999999999999999999995 455678888887777888888875210 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 574 GVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
. .+..++|+ ++.++.|++++.++...|...+..++ ||||++|+++|+||+
T Consensus 145 ------~------~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~L--PVVD~~g~LvGIIT~ 195 (475)
T TIGR01303 145 ------F------TQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVA--PLVDADGTLAGILTR 195 (475)
T ss_pred ------C------CCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEE--EEEcCCCeEEEEEEH
Confidence 0 02445566 77888999999999999999888887 999999999999998
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK03655 putative ion channel protein; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.001 Score=74.73 Aligned_cols=180 Identities=13% Similarity=0.094 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHhhhc-ch--hHHHHHHHHHHHHHH--hhhhhccccCCCCC
Q psy6631 164 QELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKK-MNAFLQK-NR--FLYPGIVVLLATSVS--FPLGLGKYMAGDLN 237 (704)
Q Consensus 164 ~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~-~~~~l~~-~~--~l~p~l~gllvg~l~--fP~~~G~~~~g~l~ 237 (704)
.-+...+++|+++|+++.+|.++..+...++..... ....... ++ ++-+.++|+++|.+. +| +. +| +
T Consensus 11 ~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gGllvgll~~~~~---~~--~G--~ 83 (414)
T PRK03655 11 LLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPLWIIGMLTLTGIAVGLVIRFSP---GH--AG--P 83 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccchHHHHHHHHHHHHHHHHHHHcC---CC--CC--C
Confidence 345678999999999999999999887755432110 0000011 11 233556777777653 22 11 11 1
Q ss_pred cHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHH
Q psy6631 238 THDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIG 317 (704)
Q Consensus 238 ~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G 317 (704)
+.++. .+.+ + .. . . -....|++.+.++.++|.+-|-=-|+.-+||++|..+|
T Consensus 84 -~~~~~-~~~~-----~-----------~~----~--~----~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~ 135 (414)
T PRK03655 84 -DPATE-PLIG-----A-----------PV----P--P----SALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIG 135 (414)
T ss_pred -hHHHH-HHhc-----C-----------CC----C--c----cHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHH
Confidence 12221 1111 0 00 0 0 23467888999999999999999999999999999999
Q ss_pred HHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHH-hCCchh------HHHHHHHHHHHHHHHh
Q psy6631 318 EIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEM-TGQITH------IIPVMIAVLISNAVAA 389 (704)
Q Consensus 318 ~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~El-TG~~~~------~lPimia~~is~~va~ 389 (704)
..+. +. .+.-...+.|+||=++++-+ |++.++..+|. .+++.. +.|+ ++++++..++.
T Consensus 136 r~~~---~~----------~~~~~l~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~~~~~~~~v-~aa~~a~~v~~ 201 (414)
T PRK03655 136 ARLL---PR----------VNRMDWTILASAGTIGALFGTPVAAALIFSQTLNGSNEVPLWDRLFAPL-MAAAAGALTTG 201 (414)
T ss_pred HHhc---cC----------CChhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHH
Confidence 7651 11 12234566788886777777 89999999995 665542 4444 45555777666
Q ss_pred hcC
Q psy6631 390 LLQ 392 (704)
Q Consensus 390 ~l~ 392 (704)
.+.
T Consensus 202 ~~~ 204 (414)
T PRK03655 202 LFF 204 (414)
T ss_pred HhC
Confidence 543
|
|
| >cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.5e-05 Score=70.81 Aligned_cols=88 Identities=15% Similarity=0.144 Sum_probs=69.8
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIP 583 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~ 583 (704)
.+.++++++++.|+.+.| ..++...+||+++ ++.+|.++..+......
T Consensus 2 ~~~~v~~~~~l~~a~~~~-~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~----------------------------- 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNAL-VENGIRSAPLWDSRKQQFVGMLTITDFILILR----------------------------- 51 (98)
T ss_pred eEEEECCCCcHHHHHHHH-HHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-----------------------------
Confidence 368899999999999999 4566778888875 34566666655322110
Q ss_pred CCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCC-CCcchHHHH
Q psy6631 584 RTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPY-TTVTGAESR 637 (704)
Q Consensus 584 ~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~-g~l~G~vtr 637 (704)
+.+++|++++.++...|...+..++ ||++++ |+++|++|+
T Consensus 52 ------------~~~v~~~~~l~~a~~~m~~~~~~~l--pVvd~~~~~~~giit~ 92 (98)
T cd04618 52 ------------LVSIHPERSLFDAALLLLKNKIHRL--PVIDPSTGTGLYILTS 92 (98)
T ss_pred ------------eEEeCCCCcHHHHHHHHHHCCCCEe--eEEECCCCCceEEeeh
Confidence 3457899999999999999999998 999998 999999987
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.3e-05 Score=70.32 Aligned_cols=110 Identities=13% Similarity=0.136 Sum_probs=76.8
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccc--cccCchhhcCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFE--VTPAPDLLRGNPHGVSASSDN 581 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~--v~~~~~~l~~~~~~~~~~~~~ 581 (704)
+++.++.+++++.|+.+.|. ..+...+||+++ ++.+|.++.+++....... +.+ ..+..+..
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~-~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~-~~~~~~~~~~~~~------------- 65 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLV-ERRVSALPIVDENGKVVDVYSRFDVINLAKEG-AYNNLDLTVGEAL------------- 65 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHH-HcCCCeeeEECCCCeEEEEEeHHHHHHHHhcC-ccccccCCHHHHH-------------
Confidence 35789999999999999994 456677888864 5678888888765432110 000 00000000
Q ss_pred CCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 582 IPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 582 ~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.....|. ++..+.|++++.++...|...+.+.+ ||+|++|+++|++|+
T Consensus 66 ------~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l--~Vvd~~~~~~Givt~ 114 (120)
T cd04641 66 ------ERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRL--VVVDENKRVEGIISL 114 (120)
T ss_pred ------hhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEE--EEECCCCCEEEEEEH
Confidence 0112233 56788999999999999999888887 999999999999987
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.3e-05 Score=70.70 Aligned_cols=104 Identities=11% Similarity=0.088 Sum_probs=75.3
Q ss_pred ceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCCC
Q psy6631 507 VKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPRT 585 (704)
Q Consensus 507 v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~~ 585 (704)
+.++.+++++.|+.+.|. ..+...++|+++ ++.+|.++..+.......... . + +
T Consensus 3 ~~~v~~~~~l~~a~~~~~-~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~-----------~-------~----~-- 57 (114)
T cd04619 3 LAKIDVNATLQRAAKILG-EPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGG-----------P-------G----C-- 57 (114)
T ss_pred eEEECCCCcHHHHHHHHH-hcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCC-----------C-------c----c--
Confidence 678999999999999994 466778898865 566787777765432210000 0 0 0
Q ss_pred CCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 586 ENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 586 ~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+.+..+++. .+..+.|++++.++++.|...+...+ ||+|++|+++|++++
T Consensus 58 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVvd~~~~~~Gvi~~ 108 (114)
T cd04619 58 TAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNI--PVVDENARPLGVLNA 108 (114)
T ss_pred cCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeE--EEECCCCcEEEEEEh
Confidence 002333444 56678999999999999999999887 999999999999987
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=97.73 E-value=1.2e-05 Score=76.53 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=77.1
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCC
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGV 575 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~ 575 (704)
..+.+++|++++..++||+++.+++++| +......+||.+++..+|++++.+.......- .+-+..
T Consensus 64 ~ita~~iM~spvv~v~pdDsi~~vv~lM-~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~--------~e~i~~----- 129 (187)
T COG3620 64 RITAKTIMHSPVVSVSPDDSISDVVNLM-RDKGISQLPVIEEDKVVGSITENDIVRALLEG--------MESIRS----- 129 (187)
T ss_pred eEeHhhhccCCeeEECchhhHHHHHHHH-HHcCCccCceeeCCeeeeeecHHHHHHHHhcc--------ccchhh-----
Confidence 3566788999999999999999999999 56777789999998889999988865433110 011111
Q ss_pred CCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 576 SASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+.++|. +.-+..|+.++.-+-.+ +++... =.|...|+++|+||+
T Consensus 130 -----------~~vr~vM~e~fP~Vs~~~~l~vI~~L--L~~~~A---VlV~e~G~~vGIITk 176 (187)
T COG3620 130 -----------LRVREVMGEPFPTVSPDESLNVISQL--LEEHPA---VLVVENGKVVGIITK 176 (187)
T ss_pred -----------hhHHHHhcCCCCcCCCCCCHHHHHHH--HhhCCe---EEEEeCCceEEEEeH
Confidence 03455666 44466788877766222 222222 234588999999998
|
|
| >cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=97.73 E-value=2.4e-05 Score=71.28 Aligned_cols=54 Identities=22% Similarity=0.244 Sum_probs=49.6
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
.+|+|+|.+++.++.+++++.++++.|.++ ++..+||+|++ ++++|+|+..|+.
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~-~~~~lpVvd~~------------~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEH-NIRTLPVVDDD------------GTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHc-CCCEEEEECCC------------CeEEEEEEHHHhh
Confidence 789999999999999999999999999987 78999999987 7999999988774
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00014 Score=81.94 Aligned_cols=123 Identities=14% Similarity=0.117 Sum_probs=92.8
Q ss_pred cccccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccc
Q psy6631 418 IYNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIY 495 (704)
Q Consensus 418 l~~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~ 495 (704)
+.+.+|+++|++ ++.+++.+.+++++.+.+.++ +++.+||.+++ ...++|+++.+|++........
T Consensus 203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~-~~SR~PV~~~~-----------~D~iiGiv~~Kdll~~~~~~~~ 270 (429)
T COG1253 203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILES-GHSRIPVYDGD-----------LDNIIGIVHVKDLLRALLDGQS 270 (429)
T ss_pred cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhC-CCCeeeEEcCC-----------CCcEEEEEEHHHHHHHHhcCcc
Confidence 456789999985 688999999999999999998 79999999933 2579999999999855332221
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH-hhhcC
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR-EERQR 554 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~-~~~~~ 554 (704)
.......+. ++..|.+.+++.++++.| +.++.+..-|+|+ +...|.++..|+ +..+|
T Consensus 271 ~~~~~~~~~-~~~~Vpet~~~~~lL~~~-r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 271 DLDLRVLVR-PPLFVPETLSLSDLLEEF-REERTHMAIVVDEYGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred ccchhhccc-CCeEecCCCcHHHHHHHH-HHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhC
Confidence 111112222 789999999999999999 5577777778877 566677776665 34555
|
|
| >cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.61 E-value=5.1e-05 Score=69.34 Aligned_cols=114 Identities=13% Similarity=0.093 Sum_probs=76.8
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhc-CCCcccccccCchhhcCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQ-RRPSRFEVTPAPDLLRGNPHGVSASSDNI 582 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~-~~~sr~~v~~~~~~l~~~~~~~~~~~~~~ 582 (704)
++.++.+++++.++++.|. ..+...+||+++ ++.+|.++..++.... .......... ...+ .
T Consensus 2 ~~~~v~~~~~i~~a~~~~~-~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~--~~~~------------~ 66 (123)
T cd04627 2 PFIPVPSTASLFQAIEILG-SGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLD--PLYP------------I 66 (123)
T ss_pred CceecCCCCCHHHHHHHHh-hCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchh--hhhh------------h
Confidence 4678999999999999994 455667888876 3557888877754321 1100000000 0000 0
Q ss_pred CCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH--HH
Q psy6631 583 PRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR--IR 639 (704)
Q Consensus 583 ~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr--~r 639 (704)
+. ...+.+. ++..+.|++++.++...|...+.+.+ ||+|++|+++|+||+ +|
T Consensus 67 ~~---~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 67 PL---RDLTIGTSDVISINGDQPLIDALHLMHNEGISSV--AVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred hh---hhcccCcCCceEeCCCCCHHHHHHHHHHcCCceE--EEECCCCcEEEEEeHHHhh
Confidence 00 1112334 66678999999999999999999887 999999999999988 65
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR00393 kpsF KpsF/GutQ family protein | Back alignment and domain information |
|---|
Probab=97.60 E-value=3.1e-05 Score=81.34 Aligned_cols=111 Identities=10% Similarity=0.019 Sum_probs=83.5
Q ss_pred ccccccccccC-ceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCC
Q psy6631 496 NVYVEDFMVRD-VKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPH 573 (704)
Q Consensus 496 ~~~V~dvM~~~-v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~ 573 (704)
..+|+|+|+++ ++++.+++++.++.+.|. ..+...++|+|+ ++.+|.++..++....... +
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~-~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~-~--------------- 216 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMS-EKRLGSAIVCDENNQLVGVFTDGDLRRALLGG-G--------------- 216 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHh-hcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcC-C---------------
Confidence 36899999999 999999999999999994 456678888875 5668888877754321100 0
Q ss_pred CCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHH
Q psy6631 574 GVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAE 635 (704)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~v 635 (704)
. + ..+..++|. ++..+.+++++.++...|...+...+ ||+|++|+++|+|
T Consensus 217 ---~-----~--~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVvd~~g~l~GvI 267 (268)
T TIGR00393 217 ---S-----L--KSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSL--VVVDDHNKVLGVL 267 (268)
T ss_pred ---c-----c--cCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEE--EEECCCCeEEEEE
Confidence 0 0 002334455 56677899999999999999888887 9999999999987
|
This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli. |
| >TIGR00400 mgtE Mg2+ transporter (mgtE) | Back alignment and domain information |
|---|
Probab=97.60 E-value=1.7e-05 Score=89.87 Aligned_cols=97 Identities=11% Similarity=0.082 Sum_probs=79.8
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccc
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVE 500 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~ 500 (704)
.+++++|++++.++.++++++|+.+.|+++ ++..+||||++ ++++|+|+.+|++....++ ..+
T Consensus 195 ~~v~~im~~~~~~v~~~~~~~eal~~m~~~-~~~~lpVVD~~------------g~lvGiIt~~Dil~~l~~~----~~e 257 (449)
T TIGR00400 195 EILSSIMRSSVFSIVGVNDQEEVARLIQKY-DFLAVPVVDNE------------GRLVGIVTVDDIIDVIQSE----ATE 257 (449)
T ss_pred CcHHHHhCCCCeeECCCCCHHHHHHHHHHc-CCCEEeEEcCC------------CeEEEEEEHHHHHHHHHhh----hHH
Confidence 369999999999999999999999999988 78999999987 7999999999997544322 237
Q ss_pred cccccCceEEeCCCCHHHHHHHhHhcCCCceeecc
Q psy6631 501 DFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLV 535 (704)
Q Consensus 501 dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv 535 (704)
|+|+....+..+++.+.++...|. .+|.+.+++.
T Consensus 258 d~~~~~gv~~~~~~~l~~~~~~~~-~~R~~wL~v~ 291 (449)
T TIGR00400 258 DFYMIAAVKPLDDSYFDTSILVMA-KNRIIWLLVL 291 (449)
T ss_pred HHHHhcCCCCCcchhhhchHHHHH-HhccchHHHH
Confidence 888877666556788888888884 5888888775
|
This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer. |
| >cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=97.59 E-value=7.1e-05 Score=69.13 Aligned_cols=105 Identities=10% Similarity=0.122 Sum_probs=72.4
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIP 583 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~ 583 (704)
+++.++.+++++.++++.|. ..+...+||+++ ++.+|.++..++...... .. .+ +
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~-~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~--------------~~-----~~----~ 57 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILK-EKGFDQLPVVDESGKILGMVTLGNLLSSLSS--------------GK-----VQ----P 57 (124)
T ss_pred CCCEEECCCCCHHHHHHHHH-HcCCCEEEEEcCCCCEEEEEEHHHHHHHHHH--------------hc-----cC----C
Confidence 35788999999999999994 456668888875 566787777764322100 00 00 0
Q ss_pred CCCCCCCCccc-CccccCCCchhhhccccccc---------ccCCCCcCcccCCCCCcchHHHH
Q psy6631 584 RTENLDGPQFC-PVFGCQPKKSILKKTNSFSL---------KNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 584 ~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~---------~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..++|. ++.++.|++++.+++..+.. ...+++ ||++++|+++|+||+
T Consensus 58 --~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~Givt~ 117 (124)
T cd04608 58 --SDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAA--IGKEKQEKPIGIVTK 117 (124)
T ss_pred --CCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccc--cccccccceEEEEeh
Confidence 014566777 78889999999988774432 133443 899999999999998
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten |
| >cd01034 EriC_like ClC chloride channel family | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0026 Score=70.94 Aligned_cols=99 Identities=19% Similarity=0.146 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHH
Q psy6631 282 MLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISV 360 (704)
Q Consensus 282 ~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~ 360 (704)
...|++.+.+|.++|.+-|-=-|+.-+||++|..++..+.... ..+--.....|+||=++++.+ |+..
T Consensus 80 ~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~~~~~~~-----------~~~~r~li~~GaaAGlaa~F~aPlaG 148 (390)
T cd01034 80 AVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGRRLPKWG-----------GLSERGLILAGGAAGLAAAFNTPLAG 148 (390)
T ss_pred HHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHHHcccCc-----------hHHHHHHHHHHHHHhHHHHhCCcchh
Confidence 5689999999999999999999999999999999998764311 123456888899998888888 8999
Q ss_pred HHHHHHHhCC---chhHHHHHHHHHHHHHHHhhc
Q psy6631 361 SVIMFEMTGQ---ITHIIPVMIAVLISNAVAALL 391 (704)
Q Consensus 361 ~viv~ElTG~---~~~~lPimia~~is~~va~~l 391 (704)
++..+|.... .....|++++++++.+++..+
T Consensus 149 ~lF~~E~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 182 (390)
T cd01034 149 IVFAIEELSRDFELRFSGLVLLAVIAAGLVSLAV 182 (390)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987653 346778889999988887653
|
These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. |
| >cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.53 E-value=9.3e-05 Score=65.13 Aligned_cols=89 Identities=9% Similarity=0.223 Sum_probs=69.8
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIP 583 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~ 583 (704)
++++++.+++++.++.+.| ...+...+||+|+ ++.+|.++..++....
T Consensus 1 ~~~~~v~~~~~i~~a~~~~-~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~------------------------------ 49 (96)
T cd04614 1 RNVPTVWEETPLPVAVRIM-ELANVKALPVLDDDGKLSGIITERDLIAKS------------------------------ 49 (96)
T ss_pred CCccEeCCCCcHHHHHHHH-HHcCCCeEEEECCCCCEEEEEEHHHHhcCC------------------------------
Confidence 3578899999999999999 4566778898875 4557766655532210
Q ss_pred CCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 584 RTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 584 ~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.++.+.|++++.++...|...+...+ ||+++.|+++|++++
T Consensus 50 -----------~~~~v~~~~~l~~a~~~m~~~~~~~l--pVv~~~~~~~Giit~ 90 (96)
T cd04614 50 -----------EVVTATKRTTVSECAQKMKRNRIEQI--PIINGNDKLIGLLRD 90 (96)
T ss_pred -----------CcEEecCCCCHHHHHHHHHHhCCCee--eEECCCCcEEEEEEH
Confidence 04566889999999999998888877 999999999999987
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.52 E-value=3.3e-05 Score=88.26 Aligned_cols=109 Identities=8% Similarity=0.043 Sum_probs=84.0
Q ss_pred cccccccc---cCceEEeCCCCHHHHHHHhHhcCCCceeecccC----CCceEEeehHHHhhhcCCCcccccccCchhhc
Q psy6631 497 VYVEDFMV---RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES----SGKFEQMEIKRREERQRRPSRFEVTPAPDLLR 569 (704)
Q Consensus 497 ~~V~dvM~---~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~----~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~ 569 (704)
..|+++|. .+.++++|++++.|+++.|. ..+...+||+|+ ++.+|.++++++.... . ..
T Consensus 94 ~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~-~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~---------~---~~- 159 (502)
T PRK07107 94 RRVKNYKAGFVVSDSNLTPDNTLADVLDLKE-KTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR---------M---SL- 159 (502)
T ss_pred HHHHHHhcCCcCCCCEeCCCCcHHHHHHHHH-hcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc---------c---CC-
Confidence 45777776 45679999999999999995 566778899885 4678888888853210 0 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccc---CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 570 GNPHGVSASSDNIPRTENLDGPQFC---PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+.+..++|+ ++.++.|+.++.++...|...+...+ ||||++++++|+||+
T Consensus 160 ----------------~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~L--PVVD~~g~LvGIIT~ 212 (502)
T PRK07107 160 ----------------DTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTL--PIVDKNGNLVYLVFR 212 (502)
T ss_pred ----------------CCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEE--EEEcCCCeEEEEEEh
Confidence 013445555 56778999999999999999999887 999999999999999
|
|
| >COG0517 FOG: CBS domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=8e-05 Score=66.80 Aligned_cols=109 Identities=14% Similarity=0.155 Sum_probs=82.0
Q ss_pred ccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCC
Q psy6631 500 EDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASS 579 (704)
Q Consensus 500 ~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~ 579 (704)
.+.|.++++++.++.++.++.+.|. ..+...+|+.+.++.+|.++..+............
T Consensus 2 ~~~~~~~~~~v~~~~~~~~a~~~m~-~~~~~~~~v~~~~~l~Giit~~di~~~~~~~~~~~------------------- 61 (117)
T COG0517 2 KDIMTKDVITVKPDTSVRDALLLMS-ENGVSAVPVVDDGKLVGIITERDILRALAAGGKRL------------------- 61 (117)
T ss_pred cccccCCCEEECCCCcHHHHHHHHH-HcCCCEEEEeeCCEEEEEEEHHHHHHHHhccCCcc-------------------
Confidence 3456688999999999999999995 45677888888766778777777544331110000
Q ss_pred CCCCCCCCCCCCccc-CccccCCCchhhhccccccc-ccCCCCcCcccCCCC-CcchHHHH
Q psy6631 580 DNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSL-KNFSPMLTPNVTPYT-TVTGAESR 637 (704)
Q Consensus 580 ~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~-~~~~~~~~Pvv~~~g-~l~G~vtr 637 (704)
.+...+|+ ++.+..|+.++.++...|.. .+..++ ||+++++ +++|++++
T Consensus 62 -------~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~l--pVv~~~~~~lvGivt~ 113 (117)
T COG0517 62 -------LPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRL--PVVDDDGGKLVGIITL 113 (117)
T ss_pred -------ccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeE--EEEECCCCeEEEEEEH
Confidence 02445666 77888899999999999998 588887 9999996 99999986
|
|
| >cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.50 E-value=8.4e-05 Score=66.74 Aligned_cols=105 Identities=11% Similarity=0.097 Sum_probs=70.5
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPRT 585 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~~ 585 (704)
++.++.+++++.++.+.|...+....+++.++++.+|.++..+........ ... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~--~~~------------------~----- 56 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTAIG--KDL------------------S----- 56 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHHhcC--CCc------------------c-----
Confidence 467899999999999999543325567777766678888777754322100 000 0
Q ss_pred CCCCCCccc-CccccCCC--chhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 586 ENLDGPQFC-PVFGCQPK--KSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 586 ~~~~~~~~~-~v~~~~p~--~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+.+..+.|. ++..+.|+ .++.++...|...+...+ ||+|++|+++|++||
T Consensus 57 ~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~--pVvd~~~~~~Gvit~ 109 (115)
T cd04620 57 DLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHL--PVLDDQGQLIGLVTA 109 (115)
T ss_pred ccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceE--EEEcCCCCEEEEEEh
Confidence 001223333 34445555 678888888888887776 999999999999998
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >PRK15094 magnesium/cobalt efflux protein CorC; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=8.7e-05 Score=79.40 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=82.3
Q ss_pred ccccccccccc--CceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhcCCCcccccccCchhhcC
Q psy6631 495 YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRG 570 (704)
Q Consensus 495 ~~~~V~dvM~~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~ 570 (704)
.+.+|+++|++ ++.++.+++++.|+.+.+.. .+...+||+++ +..+|.+..+++........+
T Consensus 65 ~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~-~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~------------ 131 (292)
T PRK15094 65 ADQRVRDIMIPRSQMITLKRNQTLDECLDVIIE-SAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE------------ 131 (292)
T ss_pred CCCEEeEEccchHHEEEEeCCCCHHHHHHHHHh-cCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCC------------
Confidence 34589999997 68999999999999999954 44556777764 356777776665421100000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 571 NPHGVSASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
. ....++|.+++...+.+++.++...|...+.+.+ ||||.||.++|+||+
T Consensus 132 ----------~-----~~l~~l~r~~~~V~e~~~l~~~L~~m~~~~~~~a--~VvDe~G~viGiVTl 181 (292)
T PRK15094 132 ----------A-----FSMDKVLRQAVVVPESKRVDRMLKEFRSQRYHMA--IVIDEFGGVSGLVTI 181 (292)
T ss_pred ----------c-----CCHHHHcCCCcCcCCCCcHHHHHHHHHhcCCEEE--EEEeCCCCEEEEeEH
Confidence 0 0123445555678889999999999998888766 999999999999998
|
|
| >cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00016 Score=65.69 Aligned_cols=115 Identities=17% Similarity=0.225 Sum_probs=78.0
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIP 583 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~ 583 (704)
+++.++.+++++.|+.+.|.+ .+...+||+++ ++.+|.++..++.............. .+. ...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~-~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~---~~~----------~~~- 66 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRR-HRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRG---RLR----------GRD- 66 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHH-cCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhh---hhh----------ccc-
Confidence 568899999999999999954 45556787765 56688888777644322111110000 000 000
Q ss_pred CCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 584 RTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 584 ~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
...+..++|. .+..+.|++++.++...|...+...+ ||+|++|+++|++++
T Consensus 67 -~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~Vv~~~g~~~Gvit~ 118 (124)
T cd04600 67 -KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHV--PVVDEDRRLVGIVTQ 118 (124)
T ss_pred -ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCce--eEEcCCCCEEEEEEh
Confidence 0012344454 66778999999999999988888877 999999999999987
|
These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00018 Score=64.61 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=49.8
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLL 488 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~ 488 (704)
.+++++|..++.++.+++++.++++.|.++ +...+||+|++ ++++|+|+..|+++
T Consensus 56 ~~v~~~~~~~~~~v~~~~~l~~al~~m~~~-~~~~lpVvd~~------------~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIVPVPIVYCDSKVTDLLRIFRET-EPPVVAVVDKE------------GKLVGTIYERELLR 110 (111)
T ss_pred cChhheeecCCcEECCCCcHHHHHHHHHHc-CCCeEEEEcCC------------CeEEEEEEhHHhhc
Confidence 358899999999999999999999999998 78999999977 78999999999864
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00012 Score=66.46 Aligned_cols=103 Identities=13% Similarity=0.110 Sum_probs=73.6
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhc-CCCcccccccCchhhcCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQ-RRPSRFEVTPAPDLLRGNPHGVSASSDNIP 583 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~-~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~ 583 (704)
++.++.+++++.++.+.|. ..+...++|+++ ++.+|.++..++.... +.. ..+ .
T Consensus 2 ~~~~~~~~~~~~~a~~~~~-~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~-~~~--------------------~-- 57 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLF-LEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA-DLQ--------------------K-- 57 (118)
T ss_pred CCEEECCCCCHHHHHHHHH-HcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC-Ccc--------------------C--
Confidence 4678999999999999994 456678888876 5568878777644322 100 000 0
Q ss_pred CCCCCCCCccc---CccccCCCchhhhcccccccccCCCCcCcccCCC---CCcchHHHH
Q psy6631 584 RTENLDGPQFC---PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPY---TTVTGAESR 637 (704)
Q Consensus 584 ~~~~~~~~~~~---~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~---g~l~G~vtr 637 (704)
....++|. .+.++.|++++..+...|...++..+ ||||++ |+++|++|+
T Consensus 58 ---~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l--pVvd~~~~~~~l~Gvit~ 112 (118)
T cd04617 58 ---VPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSL--PVVEKVDEGLEVIGRITK 112 (118)
T ss_pred ---CCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEe--eEEeCCCccceEEEEEEh
Confidence 01122332 45678999999999999999888877 999998 799999987
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00011 Score=66.04 Aligned_cols=103 Identities=15% Similarity=0.150 Sum_probs=73.5
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhc-CCCcccccccCchhhcCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQ-RRPSRFEVTPAPDLLRGNPHGVSASSDNI 582 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~-~~~sr~~v~~~~~~l~~~~~~~~~~~~~~ 582 (704)
++.++.+++++.++.+.|. ..+...++|+++ ++.+|.++..++.... ... .. + ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~-~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~-------------~~------~-~~~ 60 (114)
T cd04630 2 NVVTIDGLATVAEALQLMK-EHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEG-------------RD------P-DRV 60 (114)
T ss_pred CcEEECCCCcHHHHHHHHH-HcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCC-------------CC------C-Ccc
Confidence 5788999999999999994 455667888775 4668888877754421 100 00 0 000
Q ss_pred CCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 583 PRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 583 ~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+..++|. ++..+.|++++.++...|...+...+ ||+|+ |+++|++++
T Consensus 61 -----~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~--~Vvd~-~~~~Gvi~~ 108 (114)
T cd04630 61 -----NVYEIMTKPLISVSPDMDIKYCARLMERTNIRRA--PVVEN-NELIGIISL 108 (114)
T ss_pred -----CHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEe--eEeeC-CEEEEEEEH
Confidence 1223343 56788999999999999988787776 99998 999999987
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >KOG2550|consensus | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00015 Score=78.51 Aligned_cols=107 Identities=13% Similarity=0.095 Sum_probs=83.0
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCce
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVK 508 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~ 508 (704)
.+++++.|+.|+.++++...++ +..++||.++.. -+.+|+|+|+.+|+-.. +.....+.|+|+++..
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~-gF~g~pvTe~g~---------~~~KLvG~vtsrdi~f~---~~~~~~~~~vmt~~~~ 182 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKH-GFSGIPVTEDGK---------RGSKLVGIITSRDIQFL---EDNSLLVSDVMTKNPV 182 (503)
T ss_pred cCCcccCCcccchhhhhhcccc-cccccccccCCc---------ccceeEEEEehhhhhhh---hcccchhhhhcccccc
Confidence 4678899999999999999888 899999997651 34689999999998544 4566789999999999
Q ss_pred EEeCCCCHHHHHHHhHh--cCCCceeecccCCCceEEeehHHHh
Q psy6631 509 YIWNNMTYRDLKNLLKE--NRSLRVFPLVESSGKFEQMEIKRRE 550 (704)
Q Consensus 509 tV~~d~sl~ea~~~m~~--~~rl~Vvpvv~~~~~~~~i~~~~~~ 550 (704)
+...+.+++|+-+.+.+ ..++||++. ++..+-.+.+.|++
T Consensus 183 ~~~~gi~l~~~neiL~~~kkGkl~iv~~--~gelva~~~rtDl~ 224 (503)
T KOG2550|consen 183 TGAQGITLKEANEILKKIKKGKLPVVDD--KGELVAMLSRTDLM 224 (503)
T ss_pred cccccccHHHHHHHHHhhhcCCcceecc--CCceeeeeehhhhh
Confidence 99999999999999965 444444332 24445555565554
|
|
| >cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00018 Score=64.57 Aligned_cols=104 Identities=11% Similarity=0.098 Sum_probs=72.9
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIP 583 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~ 583 (704)
+++.++++++++.++.+.|...+....++|+++ ++.+|.++..++....... .. . .
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~--~~-------------~--~------ 57 (114)
T cd04801 1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQ--WA-------------Q--T------ 57 (114)
T ss_pred CCcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhh--cc-------------c--c------
Confidence 357889999999999999843323677888876 5667888777754322100 00 0 0
Q ss_pred CCCCCCCCccc---CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 584 RTENLDGPQFC---PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 584 ~~~~~~~~~~~---~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+..++|. .+..+.|++++.++...|...+...+ ||+|++|+++|++++
T Consensus 58 ----~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l--~Vv~~~~~~~Gvl~~ 108 (114)
T cd04801 58 ----TVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDEL--AVVEDSGQVIGLITE 108 (114)
T ss_pred ----chhhhhcccccceEECCCCcHHHHHHHHHHCCCCee--EEEcCCCcEEEEEec
Confidence 1122222 24567889999999999988888776 999999999999976
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00019 Score=65.85 Aligned_cols=117 Identities=11% Similarity=0.123 Sum_probs=76.4
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPR 584 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~ 584 (704)
++.++.+++++.++.+.|. ..+...+|++++ ++.+|.++..++........ .....+....... ..+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~-~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~--~~~~~~~~~~~~~------~~~~-- 70 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMR-KNNISGLPVVDEKGKLIGNISASDLKGLLLSPD--DLLLYRTITFKEL------SEKF-- 70 (126)
T ss_pred CeEEECCCccHHHHHHHHH-HhCCCcccEECCCCcEEEEEEHHHhhhhhcCcc--hhhcccchhhhhh------hhhc--
Confidence 5788999999999999994 455667787765 56688888887654331110 0000000000000 0000
Q ss_pred CCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 585 TENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 585 ~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
....+.+. ++..+.|++++.++...|...+.+.+ ||+|++|+++|++|+
T Consensus 71 --~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l--~Vvd~~~~~~Giit~ 120 (126)
T cd04642 71 --TDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRV--WVVDEEGKPIGVITL 120 (126)
T ss_pred --ccccccccCCCeEECCCCcHHHHHHHHHHhCCcEE--EEECCCCCEEEEEEH
Confidence 01122343 67788999999999999988888776 999999999999987
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00019 Score=64.03 Aligned_cols=105 Identities=11% Similarity=0.099 Sum_probs=72.5
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPRT 585 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~~ 585 (704)
++.++++++++.++.+.|.+ .....++|+++++.+|.++..+.....-...+.+ .+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~-~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~-------------------~~---- 57 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMRE-KRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDP-------------------ES---- 57 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHH-cCCCeEEEEECCEEEEEEEhHHHHHHHHhcCCCc-------------------Cc----
Confidence 57889999999999999954 3455677777666688888777542110000000 00
Q ss_pred CCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 586 ENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 586 ~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.+..+++. ++..+.|++++.++.+.|...+...+ ||++++|+++|++++
T Consensus 58 -~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l--~Vv~~~~~~~Gvvs~ 107 (113)
T cd04587 58 -TLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHL--PVVDKSGQVVGLLDV 107 (113)
T ss_pred -CCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcc--cEECCCCCEEEEEEH
Confidence 01223333 45567889999999999988888776 999999999999986
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai |
| >cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00018 Score=64.55 Aligned_cols=107 Identities=13% Similarity=0.091 Sum_probs=71.9
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPR 584 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~ 584 (704)
++.++++++++.++.+.|. ..+...+||+++ ++.+|.++.++...........+.. .+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~-~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~----~~~~-------------- 62 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLT-KHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLE----RLVD-------------- 62 (116)
T ss_pred CcEEECCCCcHHHHHHHHH-HCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHH----HHhC--------------
Confidence 4788999999999999995 455667888875 5678888887764432111000000 0000
Q ss_pred CCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 585 TENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 585 ~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.+..++|. .+..+.|++++.++.+.|...+. +||+|++|+++|++|+
T Consensus 63 --~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~----~~Vv~~~~~~~Gvit~ 110 (116)
T cd04643 63 --LKVIDVMNTDVPVIIDDADIEEILHLLIDQPF----LPVVDDDGIFIGIITR 110 (116)
T ss_pred --CcHHHHhcCCCceecCCCCHHHHHHHHhcCCc----eeEEeCCCeEEEEEEH
Confidence 02233444 55667889999999888876543 3999999999999987
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >KOG1764|consensus | Back alignment and domain information |
|---|
Probab=97.30 E-value=7.8e-05 Score=82.49 Aligned_cols=176 Identities=13% Similarity=0.118 Sum_probs=120.1
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc--------cccccccccc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS--------SGIYNVYVED 501 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~--------~~~~~~~V~d 501 (704)
+..++.+..++-++...+.++ +++..||.|.+ .+.++.+++++-++.... ......++.|
T Consensus 163 ~~~~i~p~~s~l~~~~~l~~~-~~~rvpv~d~~-----------~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~d 230 (381)
T KOG1764|consen 163 PFVSISPESSLLDAVLLLIKS-RIHRVPVIDPE-----------TGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSD 230 (381)
T ss_pred CceeecCcHHHHHHHHHHHhC-Cccceeeeccc-----------ccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHH
Confidence 338899999999999999988 89999999944 257888888877763211 1112223322
Q ss_pred c---cccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCC
Q psy6631 502 F---MVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSA 577 (704)
Q Consensus 502 v---M~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~ 577 (704)
. +..++..+..++++.++.+.| ..+++--+|++|+ ++.++.++..|...+..... ..-..-. .++.
T Consensus 231 l~ig~~~~i~~i~~~~~v~~al~~m-~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~-~~~~~~~-~l~~------- 300 (381)
T KOG1764|consen 231 LGIGTWSNIASISEDTPVIEALKIM-SERRISALPVVDENGKKVGNYSRFDVIHLAREGT-YNNLDLS-CLSE------- 300 (381)
T ss_pred hCcchhhhheeecCCCcHHHHHHHH-HhcCcCcceEEcCCCceecceehhhhhhhhhcCc-cCccchh-HHHH-------
Confidence 2 223578899999999999999 4688888899886 44466666666554432111 0000000 0000
Q ss_pred CCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 578 SSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 578 ~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
......... ++++|+|..++.++.+.+.....+++ .|||+.|+++|+|+-
T Consensus 301 --------~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl--~VVd~~~~l~GvvSL 351 (381)
T KOG1764|consen 301 --------ALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRL--WVVDEDGVLVGVISL 351 (381)
T ss_pred --------HhhhcccccCccEEEeecchHHHHHHHHHhcCceEE--EEEcCCCcEEEEeeH
Confidence 001111112 58999999999999999999999998 999999999999986
|
|
| >cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00019 Score=63.94 Aligned_cols=105 Identities=19% Similarity=0.272 Sum_probs=74.5
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIP 583 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~ 583 (704)
|+++++.+++++.++.+.|.+ .....+|+.++ ++.+|.+++.++..........+ .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~--------------------~-- 57 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAH-SPENNFPVVDDDGRLVGIVSLDDIREILFDPSLYD--------------------L-- 57 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHh-CCCcceeEECCCCCEEEEEEHHHHHHHHhcccccc--------------------c--
Confidence 467889999999999999953 44556788776 45678788777654221100000 0
Q ss_pred CCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCC-CCCcchHHHH
Q psy6631 584 RTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTP-YTTVTGAESR 637 (704)
Q Consensus 584 ~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~-~g~l~G~vtr 637 (704)
.+..+++. .+..+.|++++.++.+.|...+...+ ||+++ +|+++|++++
T Consensus 58 ---~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~Vv~~~~~~~~Gvvt~ 108 (114)
T cd04613 58 ---VVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQL--PVVDDDPGKLLGILSR 108 (114)
T ss_pred ---EEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEe--eEEeCCCCEEEEEEEh
Confidence 02233343 56777899999999999988888776 99998 8999999987
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a |
| >cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00024 Score=63.35 Aligned_cols=105 Identities=16% Similarity=0.188 Sum_probs=73.5
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHh-hhcCCCcccccccCchhhcCCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRRE-ERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIP 583 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~-~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~ 583 (704)
+++.++.+++++.|+.+.|.+ .....++|+++++.+|.++..+.. ..... . . .+ ..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~--------------~----~-~~-~~-- 57 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMRE-HDVGALPVCENDRLVGIVTDRDIVVRAVAE--------------G----R-DP-DT-- 57 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHH-cCCCEEEEeeCCEEEEEEEhHHHHHHHhhc--------------c----C-Cc-cc--
Confidence 357889999999999999954 445678888776667877776643 11100 0 0 00 00
Q ss_pred CCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 584 RTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 584 ~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.+..++|. .+..+.+++++.++.+.|...+...+ ||++++|+++|++++
T Consensus 58 ---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~V~~~~~~~~G~it~ 107 (113)
T cd04622 58 ---TTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRL--PVVDDDGRLVGIVSL 107 (113)
T ss_pred ---CCHHHhccCCccEECCCCCHHHHHHHHHHcCCCee--eEECCCCcEEEEEEH
Confidence 01333443 56667889999999998988777776 999999999999987
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0003 Score=63.18 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=73.3
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPR 584 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~ 584 (704)
++.++.+++++.++.+.|.+ .+...++|.++ ++.+|.++.+++........... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~-~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~--------------------~--- 57 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIE-SKHGSALVVDRDGGVVGIITLPDLLRALEADEAGE--------------------P--- 57 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHh-CCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccccc--------------------c---
Confidence 46789999999999999953 55667788775 56688787777543221100000 0
Q ss_pred CCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCC--CCcchHHHH
Q psy6631 585 TENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPY--TTVTGAESR 637 (704)
Q Consensus 585 ~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~--g~l~G~vtr 637 (704)
....+.|. .+..+.+++++.++...|...+...+ ||+|++ |+++|++++
T Consensus 58 --~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~--~Vvd~~~~~~~~Gvit~ 109 (115)
T cd04593 58 --SAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQL--PVVDRGNPGQVLGLLTR 109 (115)
T ss_pred --ccHHHhccCCceEECCCCCHHHHHHHHHHcCCcee--eEEeCCCCCeEEEEEEh
Confidence 01222333 56677899999999999988888776 999998 899999987
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d |
| >PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0016 Score=71.61 Aligned_cols=99 Identities=22% Similarity=0.277 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcc-hHHHHHHHHHHHHHHhhh-hh
Q psy6631 281 FMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPII-PGGYATVGAAAFSGAVTH-TI 358 (704)
Q Consensus 281 ~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~-p~~yAlvGmaAf~aav~~-~i 358 (704)
-.+.|++.+.++.++|.+-|-=-|+.-+||++|..++..+..- ..+ --.+...|++|-++++-+ |+
T Consensus 40 ~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~~~~~~------------~~~~~r~l~~~g~aAglaa~F~aPl 107 (355)
T PF00654_consen 40 TLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGRRFRLS------------RNETRRLLLAAGAAAGLAAAFNAPL 107 (355)
T ss_dssp HHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHHHTT--------------CHHHHHHHHHHHHHHHHHHHHT-HH
T ss_pred HHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHHhhccc------------chHHHhHHHHHHHHHHHHHHhcCCc
Confidence 3578999999999999999999999999999999999875321 112 334899999999999888 89
Q ss_pred HHHHHHHHHhC---CchhHHHHHHHHHHHHHHHhhc
Q psy6631 359 SVSVIMFEMTG---QITHIIPVMIAVLISNAVAALL 391 (704)
Q Consensus 359 s~~viv~ElTG---~~~~~lPimia~~is~~va~~l 391 (704)
..++..+|... +...++|.++++++++.+.+.+
T Consensus 108 aG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~ 143 (355)
T PF00654_consen 108 AGVLFALEELSRDFSVRLLLPALVASIVATLVSRLL 143 (355)
T ss_dssp HHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred ccceehhheeeccccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999865 4678999999999999999987
|
; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A .... |
| >TIGR03520 GldE gliding motility-associated protein GldE | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00027 Score=79.12 Aligned_cols=111 Identities=13% Similarity=0.040 Sum_probs=81.6
Q ss_pred ccccccccccc--CceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhcCCCcccccccCchhhcC
Q psy6631 495 YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRG 570 (704)
Q Consensus 495 ~~~~V~dvM~~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~ 570 (704)
.+.+|+|+|++ ++.+++.+++++|+.+.+.+ .+..-+||.++ ++.+|.+..+|....... .
T Consensus 189 ~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~-~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~-------~------- 253 (408)
T TIGR03520 189 GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIE-NGYSRIPVYKETIDNITGVLYIKDLLPHLNK-------K------- 253 (408)
T ss_pred CCCEeeeeCCchHhEEEEECCCCHHHHHHHHHh-CCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-------C-------
Confidence 34589999996 78999999999999999965 44445666654 466787777765321110 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 571 NPHGVSASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+ ....+++.+++...+.+++.+..+.|...+.+.. +|||+||.++|+||.
T Consensus 254 ----------~-----~~l~~~~~~~~~Vpe~~~l~~ll~~m~~~~~~~a--iVvDE~G~~~GiVT~ 303 (408)
T TIGR03520 254 ----------N-----FDWQSLLREPYFVPENKKLDDLLRDFQEKKNHLA--IVVDEYGGTSGLVTL 303 (408)
T ss_pred ----------C-----CCHHHHcCCCeEeCCCCcHHHHHHHHHhcCceEE--EEEcCCCCEEEEEEH
Confidence 0 0123445566778889999999888988777655 999999999999998
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. |
| >cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00036 Score=62.80 Aligned_cols=114 Identities=12% Similarity=0.110 Sum_probs=76.0
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPRT 585 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~~ 585 (704)
++.++++++++.++.+.|.. .+...+||+++++.+|.++..+.........+.. ...+... .. .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~-~~~~~~~V~d~~~~~G~i~~~~l~~~~~~~~~~~--~~~~~~~-----------~~--~ 65 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKE-NSIRRLPVVDRGKLVGIVTDRDLKLASPSKATTL--DIWELYY-----------LL--S 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHh-CCcceeeEecCCeEEEEEeHHHHHHhhhcccccc--cchhhhh-----------hh--c
Confidence 57789999999999999954 4556788887766688888777654321110000 0000000 00 0
Q ss_pred CCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 586 ENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 586 ~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.....++|. .+..+.+++++.++.+.|...+...+ ||++++|+++|++++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~--~Vv~~~~~~~Gvvt~ 116 (122)
T cd04585 66 KIKVSDIMTRDPITVSPDASVEEAAELMLERKISGL--PVVDDQGRLVGIITE 116 (122)
T ss_pred ccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCce--eEECCCCcEEEEEEH
Confidence 002233444 56678899999999999988888776 999999999999987
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i |
| >cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00029 Score=62.72 Aligned_cols=102 Identities=10% Similarity=0.048 Sum_probs=72.8
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIP 583 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~ 583 (704)
++.++.+++++.++.+.|. ..+...++++++ ++.+|.++..++........ .+ .
T Consensus 2 ~~~~i~~~~~i~~a~~~~~-~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~-~~-~--------------------- 57 (111)
T cd04590 2 DIVALDADDTLEEILELIA-ESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE-ED-L--------------------- 57 (111)
T ss_pred ceEEEcCCCCHHHHHHHHh-hCCCceEEEECCCCceEEEEEEHHHHHHHHHcCC-Cc-C---------------------
Confidence 5788999999999999995 455667888765 45688888777554321100 00 0
Q ss_pred CCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 584 RTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 584 ~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.....+.++..+.++.++.++...|...+...+ ||+|+.|+++|++|+
T Consensus 58 ----~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~--~Vv~~~~~~~Gvit~ 105 (111)
T cd04590 58 ----DLRDLLRPPLFVPESTPLDDLLEEMRKERSHMA--IVVDEYGGTAGLVTL 105 (111)
T ss_pred ----CHHHHhcCCeecCCCCcHHHHHHHHHhcCCcEE--EEEECCCCEEEEeEH
Confidence 011122244556889999999899998888776 999999999999987
|
CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, |
| >PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00039 Score=80.77 Aligned_cols=103 Identities=14% Similarity=0.205 Sum_probs=76.6
Q ss_pred ccccccccc-cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc------
Q psy6631 420 NVYVEDFMV-RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS------ 492 (704)
Q Consensus 420 ~~~V~diM~-~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~------ 492 (704)
..+|+++|+ +++.+++++++++++.+.|.++ +++.+||||++ ++++|+|++.|++.....
T Consensus 245 ~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~-~~~~~PVvd~~------------g~lvGiit~~dl~~~~~~~~iLVD 311 (546)
T PRK14869 245 SIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKS-RYRSYPVVDED------------GKVVGVISRYHLLSPVRKKVILVD 311 (546)
T ss_pred CCCHHHhccCCCcEEECCCCcHHHHHHHHHhc-CCCceEEEcCC------------CCEEEEEEHHHhhccccCceEEEc
Confidence 467999999 8999999999999999999988 78999999987 799999999999743211
Q ss_pred -------------c-----ccccccccccccCceEEe---CCCCHHHHHHHhHhcCCCceeeccc
Q psy6631 493 -------------G-----IYNVYVEDFMVRDVKYIW---NNMTYRDLKNLLKENRSLRVFPLVE 536 (704)
Q Consensus 493 -------------~-----~~~~~V~dvM~~~v~tV~---~d~sl~ea~~~m~~~~rl~Vvpvv~ 536 (704)
. .+..+++++|++++..+. ...+...+.+.|. ..+.+..|+..
T Consensus 312 ~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~-~~~i~~~~~ia 375 (546)
T PRK14869 312 HNEKSQAVEGIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYR-ENGIEPSPEIA 375 (546)
T ss_pred CccccccccchhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHH-HcCCCCCHHHH
Confidence 0 123467788988876552 2444456777774 45555555553
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00029 Score=80.76 Aligned_cols=105 Identities=11% Similarity=0.025 Sum_probs=80.9
Q ss_pred ccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC----CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCC
Q psy6631 500 EDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES----SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGV 575 (704)
Q Consensus 500 ~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~----~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~ 575 (704)
+.-|.+++.++++|+++.|+.+.| ...+...+||+|+ ++.+|.++.+++.... . .
T Consensus 103 ~~gmi~dpvtV~pd~tV~dA~~lm-~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---------~----------~- 161 (505)
T PLN02274 103 RVGFVSDPVVKSPSSTISSLDELK-ASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---------D----------R- 161 (505)
T ss_pred cccccCCCeeeCCCCcHHHHHHHH-HhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---------c----------c-
Confidence 444889999999999999999999 4566778888876 4567877777753211 0 0
Q ss_pred CCCCCCCCCCCCCCCCccc-C--ccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 576 SASSDNIPRTENLDGPQFC-P--VFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~-~--v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+.+..++|+ . +.+..|+.++.++...|...+...+ ||||++++++|+|||
T Consensus 162 ----------~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~L--PVVD~~g~LvGvITr 214 (505)
T PLN02274 162 ----------ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKL--PLVNEDGELVDLVTR 214 (505)
T ss_pred ----------CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEE--EEEcCCCeEEEEEEH
Confidence 012445555 3 6688999999999999998888887 999999999999999
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0002 Score=82.01 Aligned_cols=107 Identities=9% Similarity=0.039 Sum_probs=82.1
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC----CCceEEeehHHHhhhcCCCcccccccCchhhcCCCC
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES----SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPH 573 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~----~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~ 573 (704)
..++.|.+++.++++++++.|+.++|. ..+...+||+++ ++.+|.++.+++..... .
T Consensus 97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~-~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~--------~---------- 157 (495)
T PTZ00314 97 RFENGFIMDPYVLSPNHTVADVLEIKE-KKGFSSILITVDGKVGGKLLGIVTSRDIDFVKD--------K---------- 157 (495)
T ss_pred ccccccccCCeecCCCCCHHHHHHHHH-HcCCcEEEEEeCCccCCeEEEEEEHHHHhhccc--------C----------
Confidence 456789999999999999999999994 466778888876 45678777777541100 0
Q ss_pred CCCCCCCCCCCCCCCCCCccc---CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 574 GVSASSDNIPRTENLDGPQFC---PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~---~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..++|+ ++.+..|+.++.++.+.|...+...+ ||||++++++|+|||
T Consensus 158 ------------~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~L--PVVd~~g~liGIIT~ 210 (495)
T PTZ00314 158 ------------STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKL--PIVNDNGELVALVSR 210 (495)
T ss_pred ------------CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeE--EEEcCCCcEEEEEEe
Confidence 002334454 46777899999999999999888887 999999999999998
|
|
| >COG4109 Predicted transcriptional regulator containing CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00023 Score=75.75 Aligned_cols=118 Identities=21% Similarity=0.293 Sum_probs=85.9
Q ss_pred ccccccccc--cCceEEeCCCCHHHHHHHhHhcCCCceeecccCC-CceEEeehHHHhhhcCCCcccccccCchhhcCCC
Q psy6631 496 NVYVEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS-GKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNP 572 (704)
Q Consensus 496 ~~~V~dvM~--~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~-~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~ 572 (704)
-.+|+|+|+ .+.-++.++++++|-.++-. ..+...+||++.. ..+| ++..-|.+.+.|
T Consensus 187 I~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~-kt~~sRfPVvn~~~kvvG------------------vVt~rDv~~~~~ 247 (432)
T COG4109 187 IITVEDIMTPLEDTSYLRETDTVEDWLDLVE-KTGHSRFPVVNRSMKVVG------------------VVTMRDVLDKKP 247 (432)
T ss_pred eeeHHHhccccccceeccccccHHHHHHHHH-HcCCCccceecccceEEE------------------EEEehhhhcCCC
Confidence 468899999 77888999999999888874 4455578888864 3344 334344444422
Q ss_pred CCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH--HHHHHHHHhc
Q psy6631 573 HGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR--IRMAFEAIFH 647 (704)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr--~r~a~e~~~~ 647 (704)
. .+...+|+ -+++..|.+++..+-.-|---++.-+ ||+|+..+++||||| +=++..-+.|
T Consensus 248 ~-------------t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~--PVv~~n~~llGiitR~dvlk~lq~~q~ 310 (432)
T COG4109 248 S-------------TTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEML--PVVDSNNTLLGIITRQDVLKSLQMIQR 310 (432)
T ss_pred C-------------ccHHHHhccCCeeecccchHHHHHHHHHhccceee--eEEcCCceEEEEEEHHHHHHHHHHhcc
Confidence 1 14677899 69999999999998666666666544 999999999999999 5555555554
|
|
| >cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00057 Score=60.25 Aligned_cols=97 Identities=10% Similarity=0.088 Sum_probs=70.7
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPR 584 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~ 584 (704)
+++++++++++.++.+.|. ..+...++++++ ++.+|.++..++......
T Consensus 2 ~~~~v~~~~~~~~a~~~~~-~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~~----------------------------- 51 (106)
T cd04582 2 EPITVRPDDPLSDALGLMD-DSDLRALTVVDADGQPLGFVTRREAARASGG----------------------------- 51 (106)
T ss_pred CCcEecCCCcHHHHHHHHH-hcCCCEEEEECCCCCEEEEEeHHHHHHhccc-----------------------------
Confidence 5788999999999999994 455667888874 566887877765432100
Q ss_pred CCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 585 TENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 585 ~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
...+.+. .+..+.+++++..+...|...+...+ ||+|++|+++|++++
T Consensus 52 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Vv~~~~~~~Gvi~~ 100 (106)
T cd04582 52 ---CCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWL--PCVDEDGRYVGEVTQ 100 (106)
T ss_pred ---chhhhcccCCEEECCCCCHHHHHHHHHHCCCCee--eEECCCCcEEEEEEH
Confidence 0111222 33456888998888888888888776 999999999999987
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00031 Score=79.68 Aligned_cols=107 Identities=13% Similarity=0.133 Sum_probs=82.0
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCC----CceEEeehHHHhhhcCCCcccccccCchhhcCCCC
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS----GKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPH 573 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~----~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~ 573 (704)
..++.|.+++.++.+++++.|+.+.|. ..+...+||+|++ +.+|.++.+++..... + .
T Consensus 81 ~~~~~~~~~~vtl~~~~tv~eal~~m~-~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~--------~------~--- 142 (450)
T TIGR01302 81 RAENGIISDPVTISPETTVADVLELME-RKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD--------K------G--- 142 (450)
T ss_pred cccCceecCceEeCCCCCHHHHHHHHH-HcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc--------C------C---
Confidence 456778899999999999999999995 4566678888764 5678777776532110 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCccc--CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 574 GVSASSDNIPRTENLDGPQFC--PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~--~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.+..++|. ++..+.+++++.++...|...+.+.+ ||||++|+++|+||+
T Consensus 143 -------------~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~l--pVVDe~G~lvGiVT~ 193 (450)
T TIGR01302 143 -------------KPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKL--PVVDKNGELVGLITM 193 (450)
T ss_pred -------------CCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeE--EEEcCCCcEEEEEEh
Confidence 02233443 56778899999999999998888876 999999999999998
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0004 Score=61.65 Aligned_cols=101 Identities=16% Similarity=0.208 Sum_probs=72.2
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIP 583 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~ 583 (704)
+++.++.+++++.++.+.|. ..+...++|.++ ++.+|.++.+++........+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~----~-------------------- 56 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMI-EENINHLPVVDEDGRLVGIVTSWDISKAVARDKK----S-------------------- 56 (110)
T ss_pred CCCEEECCCCCHHHHHHHHH-hCCCceEEEECCCCcEEEEEeHHHHHHHHhhCcc----C--------------------
Confidence 56789999999999999994 355667888776 566888887775432211100 0
Q ss_pred CCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 584 RTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 584 ~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+.+. ++..+.+++++.++...|...+...+ ||++++|+++|++++
T Consensus 57 -----~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~--~Vv~~~~~~~G~v~~ 104 (110)
T cd04605 57 -----VEDIMTRNVITATPDEPIDVAARKMERHNISAL--PVVDAENRVIGIITS 104 (110)
T ss_pred -----HHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEE--eEECCCCcEEEEEEH
Confidence 111122 45567888899999888887776666 999999999999988
|
Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00034 Score=63.69 Aligned_cols=116 Identities=12% Similarity=0.113 Sum_probs=76.6
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNI 582 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~ 582 (704)
+++.++.+++++.|+.+.|.+ .+...+||+++ ++.+|.+++.++........+.+..+.. . ....
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~-~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~-----------~-~~~~ 67 (125)
T cd04631 1 KDVVTVPPTTPIMEAAKIMVR-NGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTG-----------N-GLEA 67 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHH-cCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhcccccc-----------c-cchh
Confidence 357889999999999999954 45557788766 5668888888875433222111111100 0 0000
Q ss_pred CCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 583 PRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 583 ~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.. .+..+++. .+..+.+++++.++...|...+...+ ||++++|+++|+|++
T Consensus 68 ~~--~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~--~V~~~~~~~~Gvit~ 119 (125)
T cd04631 68 IN--EPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGL--PVVDDDGKLVGIVTE 119 (125)
T ss_pred hh--cCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceE--EEEcCCCcEEEEEEH
Confidence 00 02223333 56778899999999888888777766 999999999999987
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR01137 cysta_beta cystathionine beta-synthase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00032 Score=79.54 Aligned_cols=113 Identities=11% Similarity=0.102 Sum_probs=78.9
Q ss_pred ccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCC
Q psy6631 494 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNP 572 (704)
Q Consensus 494 ~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~ 572 (704)
....+|+++|.+++.++.+++++.|+.+.|. ..+...+||+|+ ++.+|.++..++........
T Consensus 332 l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~-~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~--------------- 395 (454)
T TIGR01137 332 LKNATVKDLHLPAPVTVHPTETVGDAIEILR-EYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK--------------- 395 (454)
T ss_pred hccCCHHHhCcCCCeEECCCCcHHHHHHHHH-HcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccC---------------
Confidence 4457899999999999999999999999995 355667888875 45678887777543221000
Q ss_pred CCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 573 HGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.+. ..+..++|. ++..+.|++++.++...|...+. |+|+++|+++|+||+
T Consensus 396 ----~~~------~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~-----~vV~~~g~liGvvt~ 446 (454)
T TIGR01137 396 ----ANP------DDAVSKVMSKKFIQIGEGEKLSDLSKFLEKNSS-----AIVTEEGKPIGVVTK 446 (454)
T ss_pred ----CCc------CCCHHHhcCCCCeEECCcCcHHHHHHHHHHCCe-----eEEEECCEEEEEEEH
Confidence 000 002233444 45567888888888877765443 778888999999998
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. |
| >cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0005 Score=61.06 Aligned_cols=103 Identities=12% Similarity=0.126 Sum_probs=71.5
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPR 584 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~ 584 (704)
+++.++++++++.|+.+.|.+ .+...+++.++++.+|.+...++...... +.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~G~v~~~~l~~~~~~--~~~~~---------------------- 55 (110)
T cd04588 1 KPLITLNPNATLREAARLFNT-HHIHGAPVVDDGKLVGIVTLSDIAHAIAR--GLELA---------------------- 55 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHH-cCCCEEEEeeCCEEEEEEEHHHHHHHHhc--ccccc----------------------
Confidence 357889999999999999954 45667888776555777776664332110 00000
Q ss_pred CCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 585 TENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 585 ~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+..+.+. ++..+.++.++.++...|...+...+ ||++++|++.|++++
T Consensus 56 ---~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~V~~~~~~~~G~i~~ 104 (110)
T cd04588 56 ---KVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRL--IVTDDEGRPVGIITR 104 (110)
T ss_pred ---CHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEE--EEECCCCCEEEEEEh
Confidence 1222333 55667889999998888887777766 999999999999987
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. |
| >cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00084 Score=60.09 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=49.0
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
.+++++|.++..++.+++++.++++.|.++ +.+.+||+|++ ++++|+|+.+|++
T Consensus 58 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~Vv~~~------------~~~~Gvit~~di~ 111 (113)
T cd04607 58 DPVSEVMNRNPITAKVGSSREEILALMRER-SIRHLPILDEE------------GRVVGLATLDDLL 111 (113)
T ss_pred CCHHHhhcCCCEEEcCCCCHHHHHHHHHHC-CCCEEEEECCC------------CCEEEEEEhHHhc
Confidence 468899999999999999999999999988 78999999876 7899999998885
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00061 Score=60.36 Aligned_cols=104 Identities=15% Similarity=0.210 Sum_probs=72.4
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPR 584 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~ 584 (704)
+++.++.+++++.++.+.|.+ .....+|++++++.+|.++..++....... +.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~-~~~~~---------------------- 56 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFG-ERHRGYPVVDDGRLVGIVTLADIRRVPAEG-REATV---------------------- 56 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHH-cCCCcceEeeCCeEEEEEEHHHHHHHHhcC-ccccc----------------------
Confidence 357789999999999999954 345677887776667877777754322110 00000
Q ss_pred CCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 585 TENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 585 ~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
...+.+. ++..+.+++++.++.+.|...+...+ ||++++|+++|++++
T Consensus 57 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~V~~~~~~~~G~it~ 105 (111)
T cd04612 57 ---LVGDVMTRDPVTASPDETLRDALKRMAERDIGRL--PVVDDSGRLVGIVSR 105 (111)
T ss_pred ---CHHHhccCCCeEECCCCCHHHHHHHHHhCCCCee--eEEcCCCCEEEEEEH
Confidence 1122233 55667888998888888888777766 999999999999986
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an |
| >cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0005 Score=61.15 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=72.7
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPR 584 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~ 584 (704)
+++.++++++++.++.+.|.+ .+...+||+++++.+|.++..++....-..+.. . .
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~-~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~---~-----------------~--- 56 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTE-HRVSSLLVVDDGRLVGIVTDRDLRNRVVAEGLD---P-----------------D--- 56 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHH-cCCCeEEEEECCEEEEEEEhHHHHHHHhccCCC---c-----------------c---
Confidence 357889999999999999954 445567887776668888877754321000000 0 0
Q ss_pred CCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 585 TENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 585 ~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.+..+++. .+..+.|++++.++...|...+...+ ||+++ |+++|++++
T Consensus 57 --~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~--~Vv~~-~~~~Giit~ 105 (111)
T cd04800 57 --TPVSEVMTAPPITIPPDATVFEALLLMLERGIHHL--PVVDD-GRLVGVISA 105 (111)
T ss_pred --CCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCee--eEeEC-CEEEEEEEH
Confidence 01223333 55567899999999999998888776 99988 999999987
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa |
| >cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00066 Score=60.24 Aligned_cols=104 Identities=12% Similarity=0.138 Sum_probs=71.5
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPR 584 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~ 584 (704)
++.++.+++++.++.+.|. ..+...+||.++ ++.+|.+..++.........+. ..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~-~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~-------------------~~---- 57 (113)
T cd04623 2 DVITVRPDATVAEAAKLMA-EKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGAS-------------------AL---- 57 (113)
T ss_pred CCEEECCCCcHHHHHHHHH-HcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCC-------------------cc----
Confidence 5678999999999999994 455667888865 5667877777754322110000 00
Q ss_pred CCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 585 TENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 585 ~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..++|. ++..+.++.++.++...|...+...+ ||+++ |+++|++++
T Consensus 58 -~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~--~Vv~~-~~~~Gvit~ 107 (113)
T cd04623 58 -DTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHL--PVVDG-GKLVGIVSI 107 (113)
T ss_pred -ccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEe--EEEeC-CEEEEEEEH
Confidence 002333443 56667888888888888887777766 99998 999999987
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00067 Score=61.11 Aligned_cols=111 Identities=10% Similarity=0.017 Sum_probs=72.8
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPR 584 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~ 584 (704)
++++++.+++++.++.+.|...++...++++++++.+|.++..++.......-.. +....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~~~~~~~~~------~~~~~-------------- 60 (119)
T cd04598 1 RPAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALMELLSTPYGR------ALYGK-------------- 60 (119)
T ss_pred CCcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHHHHhchhhH------HHHcC--------------
Confidence 3577899999999999999543336678888776667878777654322110000 00000
Q ss_pred CCCCCCCccc-CccccCCCchhhhcccccccccCCCCc-CcccCCCCCcchHHHH
Q psy6631 585 TENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPML-TPNVTPYTTVTGAESR 637 (704)
Q Consensus 585 ~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~-~Pvv~~~g~l~G~vtr 637 (704)
.+..+.|. ++..+.|+.++.++.+.|...+..++. .|+|+++|+++|++++
T Consensus 61 --~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~ 113 (119)
T cd04598 61 --KPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTV 113 (119)
T ss_pred --CcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEH
Confidence 02334444 566778899988888888776643221 2799999999999987
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00058 Score=76.94 Aligned_cols=113 Identities=12% Similarity=0.075 Sum_probs=88.9
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCC
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVS 576 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~ 576 (704)
.+|.++|+.+.++++|+.++.+|++.|...+---++-+.+++...|++++++....+ +-+ .+
T Consensus 149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v-------~~~------g~----- 210 (610)
T COG2905 149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRV-------IAD------GR----- 210 (610)
T ss_pred HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHH-------Hhc------CC-----
Confidence 678999999999999999999999999652222356666777778888888865543 111 10
Q ss_pred CCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 577 ASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
++.+++.++|+ +|....+.+.+..||..|+-....|+ +|+.+|+++|++|-
T Consensus 211 -------~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl---~V~e~gq~~Gilt~ 262 (610)
T COG2905 211 -------SKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHL---PVTEDGQPLGILTL 262 (610)
T ss_pred -------CcccchhhhhccCceeecCcchHHHHHHHHHHhCCcee---eeecCCeeeEEeeH
Confidence 01236888999 99999999999999999999999997 56677999999987
|
|
| >cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00059 Score=60.77 Aligned_cols=103 Identities=9% Similarity=0.057 Sum_probs=71.5
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPRT 585 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~~ 585 (704)
+++++++++++.|+.+.|.+ .+...++++++++.+|.++..++..........+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~-~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~------------------------- 55 (111)
T cd04589 2 PPLIVDASTSIRDAARLMRE-HGADALLVRDGDPRLGIVTRTDLLDAVLLDGLPS------------------------- 55 (111)
T ss_pred CCEEECCCCcHHHHHHHHHH-cCCCEEEEecCCeEEEEEEHHHHHHHHHcCCCCC-------------------------
Confidence 46789999999999999954 4555678777666678787776543221000000
Q ss_pred CCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 586 ENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 586 ~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+.+..+.|. .+..+.|++++.++...|...+...+ ||+++ |+++|++++
T Consensus 56 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~--~Vv~~-~~~~G~it~ 105 (111)
T cd04589 56 STPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRV--VVREG-GEVVGVLEQ 105 (111)
T ss_pred CCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEE--EEeeC-CEEEEEEEh
Confidence 001223444 56677899999999888988888766 99886 899999987
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00028 Score=80.84 Aligned_cols=107 Identities=9% Similarity=0.047 Sum_probs=82.6
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCC
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVS 576 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~ 576 (704)
.++++|.+++.++.+++++.|+.+.|. ..+...+||+++ ++.+|.++.+++.... . .
T Consensus 88 ~~~dim~~~~v~i~~~~tv~ea~~~m~-~~~~~~lpVvd~~g~lvGiVt~~DL~~~~---------~------~------ 145 (486)
T PRK05567 88 RSESGVVTDPVTVTPDTTLAEALALMA-RYGISGVPVVDENGKLVGIITNRDVRFET---------D------L------ 145 (486)
T ss_pred hhhhcccCCCeEeCCCCCHHHHHHHHH-HhCCCEEEEEccCCEEEEEEEHHHhhhcc---------c------C------
Confidence 568899999999999999999999995 456668888875 5567877777653210 0 0
Q ss_pred CCCCCCCCCCCCCCCccc--CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 577 ASSDNIPRTENLDGPQFC--PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~--~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..++|. ++.++.+++++.++...|...+...+ ||+|++|+++|++|+
T Consensus 146 ---------~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~l--pVVDe~g~lvGiIT~ 197 (486)
T PRK05567 146 ---------SQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKL--PVVDDNGRLKGLITV 197 (486)
T ss_pred ---------CCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEE--EEEcCCCcEEEEEEh
Confidence 002334443 67788999999999999988888776 999999999999998
|
|
| >COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0013 Score=70.99 Aligned_cols=126 Identities=14% Similarity=0.087 Sum_probs=95.3
Q ss_pred cccccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccc
Q psy6631 418 IYNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIY 495 (704)
Q Consensus 418 l~~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~ 495 (704)
+++++|+|+|.+ ++..+..|++.++.++.+..+ .|+.+||-.++. ...+|+++.+|+++...++..
T Consensus 197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s-~HtRiplyr~~~-----------DnIiGvlh~r~llr~l~e~~~ 264 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHS-PHTRIPLYRDDL-----------DNIIGVLHVRDLLRLLNEKNE 264 (423)
T ss_pred cccceeeeeeccccceeeecCCCCHHHHHHHHhhC-CCCceeeecCCh-----------hHhhhhhhHHHHHHHhhccCc
Confidence 568999999984 588899999999999999988 799999997663 359999999999876554443
Q ss_pred ccccccccc--cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH-hhhcCCCc
Q psy6631 496 NVYVEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR-EERQRRPS 557 (704)
Q Consensus 496 ~~~V~dvM~--~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~-~~~~~~~s 557 (704)
.+-.|+++ .++..|...+++.+-+..|.+ ++..+--|+|+ +...|-++..|. +..+|-..
T Consensus 265 -~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~-~k~hialVVDEYG~i~GLVTLEDIlEEIVGdft 328 (423)
T COG4536 265 -FTKEDILRAADEPYFVPEGTPLSDQLVAFQR-NKKHIALVVDEYGDIQGLVTLEDILEEIVGDFT 328 (423)
T ss_pred -ccHhHHHHHhcCCeecCCCCcHHHHHHHHHH-hcceEEEEEeccCcEEeeeeHHHHHHHHhcccc
Confidence 44456663 568889999999999999954 55555667776 555565555554 45666554
|
|
| >cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0008 Score=59.09 Aligned_cols=97 Identities=14% Similarity=0.173 Sum_probs=69.4
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPRT 585 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~~ 585 (704)
++.++.+++++.++.+.|.+ .....+||+++++.+|.++..+...... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~V~d~~~~~Giv~~~~l~~~~~---~~-------------------------- 51 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEK-HRIGGLPVVEDGKLVGIITSRDVRRAHP---NR-------------------------- 51 (105)
T ss_pred CCEEECCCCcHHHHHHHHHH-cCCCEEEEEECCEEEEEEehHHhhcccc---cC--------------------------
Confidence 56789999999999999954 4455677777666677777665432110 00
Q ss_pred CCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 586 ENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 586 ~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
...+++. .+..+.+++++.++.+.|...+...+ ||+|+ |+++|++|+
T Consensus 52 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~--~Vv~~-~~~~G~it~ 99 (105)
T cd04599 52 --LVADAMTREVVTISPEASLLEAKRLMEEKKIERL--PVLRE-RKLVGIITK 99 (105)
T ss_pred --CHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEe--eEEEC-CEEEEEEEH
Confidence 0112222 55667889999999999998888877 99998 999999987
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00056 Score=61.83 Aligned_cols=113 Identities=14% Similarity=0.153 Sum_probs=74.7
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPRT 585 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~~ 585 (704)
++.++.+++++.|+.+.|.+ .+...++|+++++.+|.++..++..........+-.. ..+. ...
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~-~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~~~~---~~~~----------~~~-- 65 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLD-HDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVRDR---HQER----------RIR-- 65 (121)
T ss_pred CCEEECCCCcHHHHHHHHHH-cCCCeeEEEECCEEEEEEchHHHHHhhhhhhhcccch---hhhh----------hhh--
Confidence 57789999999999999854 5566788887766688787776543221100000000 0000 000
Q ss_pred CCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 586 ENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 586 ~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..+.|. +...+.|++++.++.+.|...+...+ ||+|. |+++|++++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~--~Vv~~-~~~~Gvi~~ 115 (121)
T cd04633 66 NLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGL--PVVDD-GKLVGIVTR 115 (121)
T ss_pred ccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcc--cEEEC-CEEEEEEEH
Confidence 002223343 66778999999999999988888877 99998 999999987
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0012 Score=58.58 Aligned_cols=54 Identities=11% Similarity=0.214 Sum_probs=48.9
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
..++++|.+++.++.++++++++.+.|.++ +...+||++++ ++++|+++..|++
T Consensus 53 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~Vv~~~------------~~~~G~it~~di~ 106 (108)
T cd04596 53 TTIEKVMTKNPITVNPKTSVASVAHMMIWE-GIEMLPVVDDN------------KKLLGIISRQDVL 106 (108)
T ss_pred ccHHHHhcCCCeEECCCCCHHHHHHHHHHc-CCCeeeEEcCC------------CCEEEEEEHHHhh
Confidence 468999999999999999999999999988 78999999876 7899999988875
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0017 Score=57.73 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=47.8
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLL 488 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~ 488 (704)
.+++++|.+++.++.++++++++++.|.++ +...+||++ + ++++|+++.+|++.
T Consensus 58 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~-~~~~l~Vv~-~------------~~~~Gvvt~~dl~~ 111 (112)
T cd04625 58 TTVRAIMNPEPIVASPDDSIDEVRRLMVER-HLRYLPVLD-G------------GTLLGVISFHDVAK 111 (112)
T ss_pred CCHHHHhCCCCeEECCCCCHHHHHHHHHHc-CCCeeeEEE-C------------CEEEEEEEHHHhhc
Confidence 469999999999999999999999999988 788899998 4 58999999988853
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0019 Score=58.39 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=50.1
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLL 488 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~ 488 (704)
..++.++|.+++..+.++++++++.+.|.++ +.+.+||+|++ ++++|+++..|++.
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~Vvd~~------------g~~~Gvit~~dl~~ 121 (122)
T cd04635 66 SPTVEKIMSTPVYSVTPDDSIATAVELMLEH-DIGRLPVVNEK------------DQLVGIVDRHDVLK 121 (122)
T ss_pred cCcHHHHhcCCCeeECCCCCHHHHHHHHHHc-CCCeeeEEcCC------------CcEEEEEEhHHhhc
Confidence 4668899999999999999999999999988 78899999877 78999999988853
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0022 Score=56.60 Aligned_cols=54 Identities=20% Similarity=0.277 Sum_probs=48.6
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
..++++|.++..+++++++++++.+.+.++ +...+||++++ ++++|+++.+|++
T Consensus 54 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~vv~~~------------g~~~Gvit~~~l~ 107 (109)
T cd04583 54 KSLEDIMLEDVFTVQPDASLRDVLGLVLKR-GPKYVPVVDED------------GKLVGLITRSSLV 107 (109)
T ss_pred CcHhHhhcCCceEECCCCcHHHHHHHHHHc-CCceeeEECCC------------CeEEEEEehHHhh
Confidence 358899999999999999999999999987 78899999977 7899999998875
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz |
| >cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0021 Score=56.54 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=48.3
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
..++++|.+++.++.++++++++++.+.++ +...+||++++ ++++|+|+..|++
T Consensus 52 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~Vv~~~------------g~~~Gvi~~~di~ 105 (107)
T cd04610 52 ETVEEIMSKDLVVAVPEMDIMDAARVMFRT-GISKLPVVDEN------------NNLVGIITNTDVI 105 (107)
T ss_pred ccHHHhCCCCCeEECCCCCHHHHHHHHHHh-CCCeEeEECCC------------CeEEEEEEHHHhh
Confidence 458899999999999999999999999987 67899999977 7899999988875
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0017 Score=56.64 Aligned_cols=104 Identities=14% Similarity=0.137 Sum_probs=70.9
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPR 584 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~ 584 (704)
++.++.+++++.++.+.|.. .+...++++++ ++.+|.++..++..........+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~---------------------- 58 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLE-HGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLV---------------------- 58 (113)
T ss_pred CceEecCCCCHHHHHHHHHh-cCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCccc----------------------
Confidence 46789999999999999954 45667888876 5667777766654322111110000
Q ss_pred CCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 585 TENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 585 ~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
...+.+. ++..+.+++++.++.+.|...+...+ ||+|++|+++|++++
T Consensus 59 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~V~~~~~~~~G~i~~ 107 (113)
T cd02205 59 ---TVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRL--PVVDDEGRLVGIVTR 107 (113)
T ss_pred ---cHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEE--EEEcCCCcEEEEEEH
Confidence 0111222 45566788999999888887777766 999999999999987
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali |
| >cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0021 Score=57.28 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=49.0
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
..++.++|.+++.++.+++++.++++.+.++ +...+||+|++ ++++|+++..|++
T Consensus 57 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~Vvd~~------------g~~~Gvvt~~dl~ 111 (113)
T cd04615 57 DAKVREVMNSPVITIDANDSIAKARWLMSNN-NISRLPVLDDK------------GKVGGIVTEDDIL 111 (113)
T ss_pred CCcHHHhccCCceEECCCCcHHHHHHHHHHc-CCCeeeEECCC------------CeEEEEEEHHHhh
Confidence 4568899999999999999999999999987 67889999877 7999999988874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0019 Score=58.03 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=47.4
Q ss_pred cccccccccceEEecC--CCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWN--NMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~--~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
..++++|.++...+.. +++++++++.|.++ +...+||||++ ++++|+|+++|++
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~pVv~~~------------~~~~Gvit~~di~ 112 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLEEANEILRES-KKGKLPIVNDD------------GELVALVTRSDLK 112 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHHHHHHHHHhc-CCCceeEECCC------------CeEEEEEEHHHhh
Confidence 3588999988888866 99999999999998 78899999877 7899999998875
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0046 Score=69.13 Aligned_cols=112 Identities=8% Similarity=-0.008 Sum_probs=85.5
Q ss_pred cccccccccce---EEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccc
Q psy6631 421 VYVEDFMVRDV---KYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNV 497 (704)
Q Consensus 421 ~~V~diM~~~v---~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~ 497 (704)
+++.++|.+.. ....++.+..++++.+... +.....|+|++ ++++|.++.+++....+. ..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------------~~~~g~~~~~~~~~~~~~---~~ 337 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDE-DREYGYVIERG------------NKFVGAVSIDSLKTALTQ---QQ 337 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhc-CCceEEEEcCC------------CcEEEEEeHHHHHhhhhc---CC
Confidence 45677775432 2234677899999999988 78999999988 899999999888644332 23
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
.+.+.|.+++.++.+++++.|++..+.. ...+ +||+|+ ++.+|.+++..+.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~v~~~~~~~~g~~~~~~~~ 389 (400)
T PRK10070 338 GLDAALIDAPLAVDAQTPLSELLSHVGQ-APCA-VPVVDEDQQYVGIISKGMLL 389 (400)
T ss_pred chhhhhccCCceeCCCCCHHHHHHHHHh-CCCc-EEEECCCCcEEEEEEHHHHH
Confidence 5788888889999999999999999965 5555 788875 6667777776654
|
|
| >cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0026 Score=56.53 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=48.6
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
...+.++|.+++.++.+++++.+++++|.++ +.+.+||++ + ++++|+|+..|++
T Consensus 55 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~V~~-~------------~~~~Gvvt~~di~ 108 (110)
T cd04595 55 HAPVKDYMSTDVVTVPPDTPLSEVQELMVEH-DIGRVPVVE-D------------GRLVGIVTRTDLL 108 (110)
T ss_pred cCcHHHHhcCCCEEECCCCcHHHHHHHHHHc-CCCeeEEEe-C------------CEEEEEEEhHHhh
Confidence 4568899999999999999999999999988 788999998 5 6899999998875
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PF00571 CBS: CBS domain CBS domain web page | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0026 Score=50.11 Aligned_cols=51 Identities=10% Similarity=0.154 Sum_probs=42.5
Q ss_pred cccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 499 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 499 V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
|+|+|+++++++++++++.|+.+.|. ..+...+||+++ ++.+|.++..++.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~-~~~~~~~~V~d~~~~~~G~is~~dl~ 52 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMR-KNGISRLPVVDEDGKLVGIISRSDLL 52 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHH-HHTSSEEEEESTTSBEEEEEEHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHH-HcCCcEEEEEecCCEEEEEEEHHHHH
Confidence 57899999999999999999999995 466778999965 5667888777754
|
Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A .... |
| >cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0024 Score=56.76 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=49.5
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLL 488 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~ 488 (704)
+.+++++|.++...+.+++++.++.+.+.++ +...+||+|++ ++++|+|+..|++.
T Consensus 52 ~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~Vv~~~------------~~~~Gvit~~dll~ 107 (109)
T cd04606 52 DTPVSDIMDTDVISVSADDDQEEVARLFEKY-DLLALPVVDEE------------GRLVGIITVDDVID 107 (109)
T ss_pred cchHHHHhCCCCeEEcCCCCHHHHHHHHHHc-CCceeeeECCC------------CcEEEEEEhHHhhh
Confidence 3568899999999999999999999999988 77889999876 78999999998853
|
MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0033 Score=55.88 Aligned_cols=55 Identities=16% Similarity=0.260 Sum_probs=48.2
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLL 488 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~ 488 (704)
..+++++|.+++..+.++++++++++.+.++ +...+||+|++ +++|+|++.|++.
T Consensus 57 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~Vv~~~-------------~~~Gvi~~~di~~ 111 (112)
T cd04802 57 EVPVGEVMSTPLITIDPNASLNEAAKLMAKH-GIKRLPVVDDD-------------ELVGIVTTTDIVM 111 (112)
T ss_pred cCCHHHhcCCCcEEECCCCCHHHHHHHHHHc-CCCeeEEeeCC-------------EEEEEEEhhhhhc
Confidence 3568899999999999999999999999988 77889999754 7999999998853
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0022 Score=57.01 Aligned_cols=53 Identities=19% Similarity=0.166 Sum_probs=48.1
Q ss_pred ccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 422 ~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
.+.++|.+++.++.++++++++.+.|.++ +...+||++++ ++++|+++..|+.
T Consensus 57 ~v~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~Vv~~~------------~~~~G~it~~dl~ 109 (111)
T cd04639 57 PVRGVMRRDFPTVSPSATLDAVLRLMQQG-GAPAVPVVDGS------------GRLVGLVTLENVG 109 (111)
T ss_pred cHHHHhcCCCcEECCCCcHHHHHHHHHhc-CCceeeEEcCC------------CCEEEEEEHHHhh
Confidence 58899999999999999999999999987 78899999876 6899999998874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0033 Score=55.63 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=49.3
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLL 488 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~ 488 (704)
..+++++|.+++.++.+++++.++++.+.+. +...+||+|++ ++++|+|+..|++.
T Consensus 55 ~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~Vv~~~------------~~~~Gvi~~~di~~ 110 (111)
T cd04611 55 QTPVGEVMSSPLLTVPADTSLYDARQLMREH-GIRHLVVVDDD------------GELLGLLSQTDLLQ 110 (111)
T ss_pred CcCHHHhcCCCceEECCCCCHHHHHHHHHHc-CCeEEEEECCC------------CcEEEEEEhHHhhc
Confidence 4568999999999999999999999999987 67889999976 78999999988853
|
PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB |
| >cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0019 Score=57.04 Aligned_cols=102 Identities=12% Similarity=0.049 Sum_probs=65.7
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPRT 585 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~~ 585 (704)
++.++.+++++.|+.+.|.+ .....+||+++++.+|.++..++...........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~-~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~------------------------- 55 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMRE-YGVSQLPVVDDGRVVGSIDESDLLDALIEGKAKF------------------------- 55 (110)
T ss_pred CcEEECCCCcHHHHHHHHHH-cCCceeeEeeCCeeEEEEeHHHHHHHHhcccccc-------------------------
Confidence 46789999999999999954 4456778777666678777776544321100000
Q ss_pred CCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 586 ENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 586 ~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+.+..+.+. .+....+++++.++...|.. . ..+ |||+++|+++|++++
T Consensus 56 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~--~vv~~~~~~~Gvvt~ 104 (110)
T cd04609 56 SLPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVA--VVVDEGGKFVGIITR 104 (110)
T ss_pred CcCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-Cce--eEEecCCeEEEEEeH
Confidence 001222333 34456777877777777766 2 233 899999999999987
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote |
| >cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0024 Score=56.77 Aligned_cols=54 Identities=24% Similarity=0.255 Sum_probs=48.5
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
.++.++|.++..++.++++++++++.+.++ +...+||++++ ++++|+|+..|++
T Consensus 59 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~Vv~~~------------~~~iG~it~~di~ 112 (114)
T cd04604 59 LPVADVMTRNPKTIDPDALAAEALELMEEN-KITALPVVDDN------------GRPVGVLHIHDLL 112 (114)
T ss_pred CCHHHhhccCCeEECCCCcHHHHHHHHHHc-CCCEEEEECCC------------CCEEEEEEHHHhh
Confidence 359999999999999999999999999987 77899999876 7899999998875
|
These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct |
| >cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0027 Score=57.40 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=49.5
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
..++.++|.+++.++.+++++.++++.|.++ +...+||+|++ ++++|+++..|++
T Consensus 66 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~Vv~~~------------~~~~Gvit~~dl~ 120 (122)
T cd04803 66 DVPVAEVMKTDVLTVTPDTPLREAAEIMVEN-KIGCLPVVDDK------------GTLVGIITRSDFL 120 (122)
T ss_pred CcCHHHhhCCCCeEeCCCCcHHHHHHHHHHc-CCCeEEEEcCC------------CCEEEEEEHHHhh
Confidence 5679999999999999999999999999987 77889999876 6899999998874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0033 Score=55.53 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=47.5
Q ss_pred ccccccccccceEEecC-CCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWN-NMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~-~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
...+.++|.+++.++.+ ++++.++++.+.++ +...+||+|++ ++++|+|+..|++
T Consensus 53 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~Vv~~~------------~~~~Gvi~~~dil 108 (110)
T cd04601 53 DKPVSEVMTPENLLTTVEGTSLEEALELLHEH-KIEKLPVVDDE------------GKLKGLITVKDIE 108 (110)
T ss_pred CCCHHHhcccCceEEecCCCCHHHHHHHHHHh-CCCeeeEEcCC------------CCEEEEEEhhhhh
Confidence 35688999887777777 99999999999998 78899999876 6899999999885
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. |
| >cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0027 Score=58.90 Aligned_cols=55 Identities=20% Similarity=0.255 Sum_probs=49.3
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLL 488 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~ 488 (704)
..+++++|.+++..+.+++++.++++.|.+. +.+.+||+| + ++++|+|++.|++.
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~l~Vvd-~------------g~~~Gvit~~di~~ 134 (135)
T cd04586 80 GRKVADVMTRPVVTVGEDTPLAEVAELMEEH-RIKRVPVVR-G------------GRLVGIVSRADLLR 134 (135)
T ss_pred CCCHHHHhCCCceEeCCCCcHHHHHHHHHHc-CCCccCEec-C------------CEEEEEEEhHhhhc
Confidence 3569999999999999999999999999998 788999998 6 78999999998853
|
BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0077 Score=66.49 Aligned_cols=106 Identities=9% Similarity=0.065 Sum_probs=80.7
Q ss_pred cccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccC
Q psy6631 427 MVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRD 506 (704)
Q Consensus 427 M~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~ 506 (704)
|........++.+..++.+.+... +.....|+|++ +++.|.++.+++...... ...+.+.|.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------------~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~ 311 (363)
T TIGR01186 248 MNTGPITKTADKGPRSALQLMRDE-RVDSLYVVDRQ------------NKLVGVVDVESIKQARKK---AQGLQDVLIDD 311 (363)
T ss_pred ccccceeecCCCCHHHHHHHHHhc-CCceEEEEcCC------------CCEEEEEeHHHHHHHhhc---CCchhhhhccC
Confidence 444444566788899999999877 67788899877 789999998877533222 23578889999
Q ss_pred ceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 507 VKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 507 v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
++++.+|+++.|++..|. ....+ +||+|+ ++.+|.+++..+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~-~~~~~-~~v~~~~~~~~g~i~~~~~~ 354 (363)
T TIGR01186 312 IYTVDAGTLLRETVRKVL-KAGIK-VPVVDEDQRLVGIVTRGSLV 354 (363)
T ss_pred CceECCCCcHHHHHHHHH-hCCCC-EEEECCCCcEEEEEEHHHHH
Confidence 999999999999999995 45566 888875 5667777776643
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0043 Score=58.15 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=48.1
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
..+++++|.+++..+.+++++.++.+.+.++ +...+||++++ +++|+|+..|++
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~l~Vv~~~-------------~~~Gvit~~di~ 133 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEA-NISGLPVVDND-------------NIVGVITKTDIC 133 (135)
T ss_pred cccHHHhcCCCCeEECCCCCHHHHHHHHHHc-CCCEEEEEeCC-------------EEEEEEEHHHHh
Confidence 4579999999999999999999999999988 78899999754 799999998875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0046 Score=56.65 Aligned_cols=57 Identities=23% Similarity=0.123 Sum_probs=48.5
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
...+.++|.+++.++.+++++.++++.|.++ +...+||++++ ++++++|+|+..|++
T Consensus 70 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~-~~~~~~V~~~~----------~~~~~~Gvit~~di~ 126 (128)
T cd04632 70 DLPVYDAMSSPVITASPNDSVRDAVDRMLEN-DDSSVVVVTPD----------DDTKVVGILTKKDVL 126 (128)
T ss_pred cCcHHHHhcCCCceECCCCcHHHHHHHHHhC-CCCeEeEeccC----------CCCcEEEEEEhHhhh
Confidence 3568899999999999999999999999988 67889998642 227899999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0059 Score=54.26 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=47.4
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
..++++|.+++.++.+++++.++++.|.++ +...+||++++ +++|+|+..|++
T Consensus 57 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~Vv~~~-------------~~~G~it~~di~ 109 (111)
T cd04626 57 KKVFNIVSQDVFYVNEEDTIDEALDIMREK-QIGRLPVVDDN-------------KLIGVVRTKDIL 109 (111)
T ss_pred CcHHHHhcCCcEEEcCCCcHHHHHHHHHHc-CCCeeeEeECC-------------EEEEEEEhHHhc
Confidence 358899999999999999999999999998 78899999754 799999999885
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0052 Score=54.28 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=46.0
Q ss_pred ccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 422 ~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
.+.++|.++..++.++++++++++.|.++ +...+||+| + ++++|+++..|+.
T Consensus 51 ~~~~~~~~~~~~v~~~~~l~~a~~~~~~~-~~~~~~Vv~-~------------~~~iGvit~~dl~ 102 (104)
T cd04594 51 DVVDYIVRGIPYVRLTSTAEEAWEVMMKN-KTRWCPVVD-D------------GKFKGIVTLDSIL 102 (104)
T ss_pred chhhhhhcCCcEEcCCCCHHHHHHHHHHc-CcceEEEEE-C------------CEEEEEEEHHHhh
Confidence 36778988899999999999999999988 788899997 4 5899999998875
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do |
| >KOG1764|consensus | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.022 Score=63.26 Aligned_cols=107 Identities=10% Similarity=0.139 Sum_probs=81.5
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccc---cc-cccc---
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYN---VY-VEDF--- 502 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~---~~-V~dv--- 502 (704)
++.++..++++.+++++|.+. +.+++||||+. ++.+|.++..|+.....+..+. .. ++..
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~-~is~lpvV~~~------------g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~ 304 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSER-RISALPVVDEN------------GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSH 304 (381)
T ss_pred hheeecCCCcHHHHHHHHHhc-CcCcceEEcCC------------CceecceehhhhhhhhhcCccCccchhHHHHHhhh
Confidence 688899999999999999998 89999999987 6779999999998554433222 11 2111
Q ss_pred ---cccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 503 ---MVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 503 ---M~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
-...+.+.++++++.++.+.|. .++..-+-|+|+ +..+|.++..+..
T Consensus 305 ~~~~~~~vvtc~~~ssL~~vi~~lv-~~~vHRl~VVd~~~~l~GvvSLsDil 355 (381)
T KOG1764|consen 305 RPIRFEGVVTCRPTSTLAEVIDKLV-AHRVHRLWVVDEDGVLVGVISLSDIL 355 (381)
T ss_pred cccccCccEEEeecchHHHHHHHHH-hcCceEEEEEcCCCcEEEEeeHHHHH
Confidence 1234789999999999999995 466777777776 5667777777653
|
|
| >cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.005 Score=55.74 Aligned_cols=54 Identities=24% Similarity=0.294 Sum_probs=48.5
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
.+++++|.+++.++.+++++.++++.+.++ +...+||+|++ ++++|+++..|++
T Consensus 67 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~vv~~~------------~~~~Gvit~~dll 120 (122)
T cd04637 67 RRAHQIMTRDPITVSPDTPVDEASKLLLEN-SISCLPVVDEN------------GQLIGIITWKDLL 120 (122)
T ss_pred hHHHHhhcCCCeeeCCCCcHHHHHHHHHHc-CCCeEeEECCC------------CCEEEEEEHHHhh
Confidence 468899999999999999999999999987 77889999876 6899999988875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0097 Score=56.00 Aligned_cols=114 Identities=11% Similarity=0.095 Sum_probs=70.8
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCC-
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIP- 583 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~- 583 (704)
++.++.+++++.|+++.|. ..+...+||+|+ ++.+|.++..++..........+....-+.+.. ......
T Consensus 2 ~~~~v~~~~~l~ea~~~m~-~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~ 73 (133)
T cd04592 2 KYIKVSPTTTLKEALNLML-DEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQT-------NTCLVSS 73 (133)
T ss_pred CceEECCCCCHHHHHHHHH-HcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhccc-------ccccHHH
Confidence 5789999999999999994 455678898876 566888988886553321111100000000000 000000
Q ss_pred -CCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCC
Q psy6631 584 -RTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYT 629 (704)
Q Consensus 584 -~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g 629 (704)
.....+.++|+ ++.++.|++++.++...|...++..+ ||+|+.+
T Consensus 74 i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~l--PVvd~~~ 119 (133)
T cd04592 74 VCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQL--PVVKRGV 119 (133)
T ss_pred HhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcC--CEecCCc
Confidence 00001122344 67889999999999999999999887 9998764
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually |
| >cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0053 Score=54.68 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=47.5
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
..++.++|.+++.++.+++++.++.+.|.++ +...+||+|+ ++++|+|+.+|++
T Consensus 59 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~Vv~~-------------~~~~Gvit~~di~ 112 (114)
T cd04629 59 VATVRDIMTTEVLTVSPDDSIVDLAQLMLKA-KPKRYPVVDD-------------GKLVGQISRRDVL 112 (114)
T ss_pred CccHHHHhccCceEECCCCcHHHHHHHHHHh-CCCccCEEEC-------------CEEEEEEEHHHHh
Confidence 3468899999999999999999999999998 6788999975 4799999998875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0076 Score=53.54 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=48.1
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
..+.++|.+++..+.+++++.++++.+.++ +....||++++ ++++|+++..|++
T Consensus 57 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~Vv~~~------------g~~~Gilt~~dl~ 110 (112)
T cd04624 57 TPVSEIMTRDLVTVDPDEPVAEAAKLMRKN-NIRHHLVVDKG------------GELVGVISIRDLV 110 (112)
T ss_pred cCHHHhccCCCEEECCCCcHHHHHHHHHHc-CccEEEEEcCC------------CcEEEEEEHHHhc
Confidence 358899999999999999999999999987 67889999876 7899999998875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0079 Score=55.54 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=47.3
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
.++.++|.+++.++.+++++.++++.|.+. +.+.+||+|+ ++++|+++..|++
T Consensus 78 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~V~~~-------------~~~iGvit~~dl~ 130 (132)
T cd04636 78 KKVEEIMTKKVITVDEDTTIEDVARIMSKK-NIKRLPVVDD-------------GKLVGIISRGDII 130 (132)
T ss_pred CCHHHhccCCceEECCCCcHHHHHHHHHHC-CCCeeEEEEC-------------CEEEEEEEHHHhh
Confidence 368899999999999999999999999988 7889999975 4899999998875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0071 Score=54.42 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=48.2
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLL 488 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~ 488 (704)
..+++++|.+++.++.++++++++++.|.++ +...+||++++ +++|+++.+|++.
T Consensus 66 ~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~-~~~~~~V~~~~-------------~~~Gvv~~~di~~ 120 (121)
T cd04584 66 KMPVKEIMTKDVITVHPLDTVEEAALLMREH-RIGCLPVVEDG-------------RLVGIITETDLLR 120 (121)
T ss_pred CcCHHHHhhCCCeEECCCCcHHHHHHHHHHc-CCCeEEEeeCC-------------EEEEEEEHHHhhc
Confidence 4568999999999999999999999999988 78899999754 7999999888753
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in |
| >COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0054 Score=69.16 Aligned_cols=124 Identities=13% Similarity=0.150 Sum_probs=86.1
Q ss_pred ccccccccccccCceEEeCCCCHHHHHHHhHh----cCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhh
Q psy6631 494 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKE----NRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLL 568 (704)
Q Consensus 494 ~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~----~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l 568 (704)
....+++..|+++..++.++.|+.++...+.+ .++...+-|+|. ++.+|.++.++ .+
T Consensus 129 y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~------------------Ll 190 (451)
T COG2239 129 YPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRD------------------LL 190 (451)
T ss_pred CChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHH------------------Hh
Confidence 34568899999999999999999999999964 344556666665 44566555554 22
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH-------HHH
Q psy6631 569 RGNPHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR-------IRM 640 (704)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr-------~r~ 640 (704)
..+| ..+..++|. .+....|++....+-..|.-.++-.+ ||||+.++++|++|- -..
T Consensus 191 ~a~~-------------~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~--PVVd~~~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 191 TAEP-------------DELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAV--PVVDEDNRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred cCCc-------------HhHHHHHhcccceeecccCCHHHHHHHHHHhCCeec--ceECCCCceeeeeeHHHHHHHHHHH
Confidence 1111 012344555 55666777777666666666666554 999999999999997 556
Q ss_pred HHHHHhcccc
Q psy6631 641 AFEAIFHKSA 650 (704)
Q Consensus 641 a~e~~~~~~~ 650 (704)
|=||+.|-..
T Consensus 256 a~eDi~~~~G 265 (451)
T COG2239 256 ATEDILRMAG 265 (451)
T ss_pred HHHHHHHhcC
Confidence 7778888555
|
|
| >PRK11573 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.047 Score=61.43 Aligned_cols=115 Identities=12% Similarity=0.077 Sum_probs=74.9
Q ss_pred ccccccccccc--CceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhcCCCcccccccCchhhcC
Q psy6631 495 YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRG 570 (704)
Q Consensus 495 ~~~~V~dvM~~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~ 570 (704)
.+.+|+|+|++ ++..++.++++.|+.+.+.+ .+..-+||.++ ++.+|.+.-+|.........+.+.
T Consensus 185 ~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~-~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~~~~--------- 254 (413)
T PRK11573 185 EKVTVDDIMVPRNEIVGIDINDDWKSILRQLTH-SPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTK--------- 254 (413)
T ss_pred CCCChhhcCCccceEEEEECCCCHHHHHHHHHh-CCCceEEEEcCCCCceEEEEEHHHHHHHhhccCcCCH---------
Confidence 34589999984 57889999999999999964 33334455433 556777766665322110000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 571 NPHGVSASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+ ...+.+.+++...+.+++.+..+.|.-...+-. -|||.||...|+||.
T Consensus 255 --------------~--~l~~~~r~~~~Vpe~~~l~~lL~~~~~~~~~~A--iVvDEyG~~~GiVTl 303 (413)
T PRK11573 255 --------------E--NMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVG--LVVDEYGDIQGLVTV 303 (413)
T ss_pred --------------H--HHHhhccCCeEeCCCCcHHHHHHHHHhcCCeEE--EEEecCCCeEEEeeH
Confidence 0 111233356667788899998888887666543 689999999999997
|
|
| >COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0055 Score=62.35 Aligned_cols=115 Identities=11% Similarity=0.080 Sum_probs=84.4
Q ss_pred ccccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccc
Q psy6631 419 YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYN 496 (704)
Q Consensus 419 ~~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~ 496 (704)
..++|+|+|.+ ..++++.+.++.+.++.+.++ .|+.|||+.++. ..+.|++..+|++..-......
T Consensus 65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iies-aHSRfPVi~edk-----------D~v~GIL~AKDLL~~~~~~~~~ 132 (293)
T COG4535 65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIES-AHSRFPVISEDK-----------DHVEGILLAKDLLPFMRSDAEP 132 (293)
T ss_pred HHhhHhhhcccHHHheeccccCCHHHHHHHHHHh-ccccCCcccCCc-----------hhhhhhhhHHHHHHHhcCCccc
Confidence 45789999985 478899999999999999998 899999997652 4799999999998643333233
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-C--CceEEeehH
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-S--GKFEQMEIK 547 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~--~~~~~i~~~ 547 (704)
-.++++.+ +...|.+.-.+.-.++-+ +.+|-...-|+|+ + ..+.+++|.
T Consensus 133 F~i~~lLR-Pav~VPESKrvd~lLkeF-R~~RnHMAIViDEfGgVsGLVTIEDi 184 (293)
T COG4535 133 FDIKELLR-PAVVVPESKRVDRLLKEF-RSQRNHMAIVIDEFGGVSGLVTIEDI 184 (293)
T ss_pred ccHHHhcc-cceecccchhHHHHHHHH-HhhcCceEEEEeccCCeeeeEEHHHH
Confidence 33444444 466778877788788887 5667767777776 2 335555554
|
|
| >cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0046 Score=56.72 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=45.3
Q ss_pred ccccccccccceEEe------cCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 420 NVYVEDFMVRDVKYI------WNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 420 ~~~V~diM~~~v~~v------~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
..+++++|+++...+ .+++++.++++.|.++ +.+.+||+|++ +++++|+|+..|++
T Consensus 63 ~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~-~~~~lpVvd~~-----------~~~~~G~it~~di~ 124 (126)
T cd04640 63 ELTVADVMTPKEDLKALDLEELENASVGDVVETLKAS-GRQHALVVDRE-----------HHQIRGIISTSDIA 124 (126)
T ss_pred heEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHC-CCceEEEEECC-----------CCEEEEEEeHHHHh
Confidence 456899998765443 3689999999999988 78899999863 15899999998875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.014 Score=51.93 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=43.5
Q ss_pred ccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 426 FMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 426 iM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
+|.+++.++++++++.++.+.|.++ +...+||++ + ++++|+|+++|+.
T Consensus 56 ~m~~~~~~v~~~~~l~~~~~~~~~~-~~~~~pVv~-~------------~~~~Gvvt~~dl~ 103 (105)
T cd04591 56 YIDPSPFTVSPRTSLEKVHQLFRKL-GLRHLLVVD-E------------GRLVGIITRKDLL 103 (105)
T ss_pred hccCCCceECCCCcHHHHHHHHHHc-CCCEEEEEE-C------------CeEEEEEEhhhhh
Confidence 8989999999999999999999988 789999995 4 5899999999885
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS |
| >cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.024 Score=49.92 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=45.5
Q ss_pred ccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 422 ~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
.++++|.+++.++.++++++++.+.+.++ +...+||+|+ ++++|+++..|++
T Consensus 53 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~Vvd~-------------~~~~G~it~~d~~ 104 (106)
T cd04638 53 QLALLMTRDPPTVSPDDDVKEAAKLMVEN-NIRRVPVVDD-------------GKLVGIVTVADIV 104 (106)
T ss_pred hHHHHhcCCCceECCCCCHHHHHHHHHHc-CCCEEEEEEC-------------CEEEEEEEHHHhh
Confidence 46788988999999999999999999988 7789999984 4799999988874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >KOG0474|consensus | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.0091 Score=68.12 Aligned_cols=138 Identities=14% Similarity=0.057 Sum_probs=84.0
Q ss_pred ccccccccccccCceEEeCCCCHHHHHHHhHh--cCCCceeecccCC---CceEEeehHHHhhhc-------CCCccccc
Q psy6631 494 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKE--NRSLRVFPLVESS---GKFEQMEIKRREERQ-------RRPSRFEV 561 (704)
Q Consensus 494 ~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~--~~rl~Vvpvv~~~---~~~~~i~~~~~~~~~-------~~~sr~~v 561 (704)
..+.+++|+|++++.+++.-+.+..+.+.+.. .+..||++-.+.+ +..+-+-|+++..+. .++++.+.
T Consensus 579 mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~ 658 (762)
T KOG0474|consen 579 MRNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDL 658 (762)
T ss_pred hhhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCc
Confidence 35678999999999999999999999999965 4445555444432 222333333332211 11111111
Q ss_pred ccCchhhcCCCCCC---C-CCCCC--CCCC-C---CCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCC
Q psy6631 562 TPAPDLLRGNPHGV---S-ASSDN--IPRT-E---NLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTT 630 (704)
Q Consensus 562 ~~~~~~l~~~~~~~---~-~~~~~--~~~~-~---~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~ 630 (704)
.. .+.+.-++ | ++.++ +..+ . -+....|+ .+.+..+.+|+.|+-.+|...+++|+ -||++..+
T Consensus 659 ~~----~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhL--lVv~~~~~ 732 (762)
T KOG0474|consen 659 PV----RRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHL--LVVPKTNR 732 (762)
T ss_pred ch----hhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeE--EEecCCCc
Confidence 11 11110000 0 00010 1100 0 12334555 88899999999999999999999998 79999999
Q ss_pred cchHHHH
Q psy6631 631 VTGAESR 637 (704)
Q Consensus 631 l~G~vtr 637 (704)
++|++||
T Consensus 733 ~~gilTR 739 (762)
T KOG0474|consen 733 VVGILTR 739 (762)
T ss_pred eeEEEeh
Confidence 9999999
|
|
| >COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.0089 Score=64.68 Aligned_cols=145 Identities=11% Similarity=0.065 Sum_probs=82.5
Q ss_pred HHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccc--cCceEEeCCCCHHH
Q psy6631 441 RDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMV--RDVKYIWNNMTYRD 518 (704)
Q Consensus 441 ~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~--~~v~tV~~d~sl~e 518 (704)
+|+.-+.... ++..|+...+ + ..|.|++..+ +.+|+|+|+ .++..+.-|++.++
T Consensus 168 EElR~~v~~~--~~e~~~~~~~----------r-dmL~gvLDLe-----------~~tV~DIMvpR~~i~~id~d~~~e~ 223 (423)
T COG4536 168 EELRTAVNES--GSEGSVNKID----------R-DMLLGVLDLE-----------NLTVSDIMVPRNEIIGIDIDDPWEE 223 (423)
T ss_pred HHHHHHHHHh--hccccccccc----------H-HHHhcccccc-----------cceeeeeeccccceeeecCCCCHHH
Confidence 4555555544 5667776533 1 3578877543 459999997 45788999999999
Q ss_pred HHHHhHh--cCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCCCCCCCCCcccCc
Q psy6631 519 LKNLLKE--NRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPRTENLDGPQFCPV 596 (704)
Q Consensus 519 a~~~m~~--~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 596 (704)
+.+.+.. ..|+|++-..- ++.+|.+--++..+......-+. + ....+.-.++
T Consensus 224 iv~ql~~s~HtRiplyr~~~-DnIiGvlh~r~llr~l~e~~~~~------------------------k-~d~~~~a~ep 277 (423)
T COG4536 224 IVRQLLHSPHTRIPLYRDDL-DNIIGVLHVRDLLRLLNEKNEFT------------------------K-EDILRAADEP 277 (423)
T ss_pred HHHHHhhCCCCceeeecCCh-hHhhhhhhHHHHHHHhhccCccc------------------------H-hHHHHHhcCC
Confidence 9988866 56665554432 22445333333222221110000 0 0111111244
Q ss_pred cccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 597 FGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 597 ~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
|-....+++..-.+.|....-+-- -|||.||.+.|+||-
T Consensus 278 yFVPe~Tpl~~QL~~F~~~k~hia--lVVDEYG~i~GLVTL 316 (423)
T COG4536 278 YFVPEGTPLSDQLVAFQRNKKHIA--LVVDEYGDIQGLVTL 316 (423)
T ss_pred eecCCCCcHHHHHHHHHHhcceEE--EEEeccCcEEeeeeH
Confidence 555555666656566655222211 499999999999997
|
|
| >smart00116 CBS Domain in cystathionine beta-synthase and other proteins | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.027 Score=41.16 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=38.0
Q ss_pred eEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 431 VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 431 v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
+.++.+++++.++.+.+.++ +...+||++++ ++++|+++..++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~------------~~~~g~i~~~~l~ 45 (49)
T smart00116 2 VVTVSPDTTLEEALELLREH-GIRRLPVVDEE------------GRLVGIVTRRDII 45 (49)
T ss_pred ceEecCCCcHHHHHHHHHHh-CCCcccEECCC------------CeEEEEEEHHHHH
Confidence 46789999999999999987 78999999876 6899999877763
|
Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. |
| >cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.042 Score=51.75 Aligned_cols=54 Identities=20% Similarity=0.300 Sum_probs=47.5
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
...+.++|.+++.++.+++++.++.+.|.++ +...+||++++ +++|+++..|++
T Consensus 88 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~-~~~~~~Vv~~~-------------~~~Gvvt~~dl~ 141 (143)
T cd04634 88 KMKVRDIMTKKVITISPDASIEDAAELMVRH-KIKRLPVVEDG-------------RLVGIVTRGDII 141 (143)
T ss_pred cCCHHHHcCCCCeEECCCCcHHHHHHHHHHc-CCCEEEEEECC-------------EEEEEEEHHHhh
Confidence 4568899999999999999999999999988 78889999754 799999988875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.036 Score=62.61 Aligned_cols=113 Identities=16% Similarity=0.068 Sum_probs=75.2
Q ss_pred ccccccccccc--CceEEeCCCCHHHHHHHhHh--cCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcC
Q psy6631 495 YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKE--NRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRG 570 (704)
Q Consensus 495 ~~~~V~dvM~~--~v~tV~~d~sl~ea~~~m~~--~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~ 570 (704)
.+.+|+++|++ ++..+..+++++++.+.+.+ ..|.||+. .+.+..+|.+.-+++....
T Consensus 204 ~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~-~~~D~iiGiv~~Kdll~~~----------------- 265 (429)
T COG1253 204 DDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYD-GDLDNIIGIVHVKDLLRAL----------------- 265 (429)
T ss_pred CCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEc-CCCCcEEEEEEHHHHHHHH-----------------
Confidence 45689999984 57778889999999999965 45666666 3335667766555543322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 571 NPHGVSASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
...+. .. .......+++...+.+++.++...|....-+-. -|+|.||...|+||.
T Consensus 266 -~~~~~--~~-------~~~~~~~~~~~Vpet~~~~~lL~~~r~~~~hmA--iVvDEyG~~~GlVTl 320 (429)
T COG1253 266 -LDGQS--DL-------DLRVLVRPPLFVPETLSLSDLLEEFREERTHMA--IVVDEYGGVEGLVTL 320 (429)
T ss_pred -hcCcc--cc-------chhhcccCCeEecCCCcHHHHHHHHHHhCCeEE--EEEEcCCCeEEEeEH
Confidence 11110 00 001111256666788999999888887666543 699999999999997
|
|
| >cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.14 Score=46.46 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=42.7
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
.+|.|+|.+++.++.+++++.++++.|. ..+...+||+++ ++.+|.++..++
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~-~~~~~~lpVvd~~~~l~Givt~~dl 110 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMH-EHNIRTLPVVDDDGTPAGIITLLDL 110 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHH-HcCCCEEEEECCCCeEEEEEEHHHh
Confidence 5689999999999999999999999994 466778999976 455777776654
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >KOG2550|consensus | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.16 Score=55.63 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=51.7
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS 491 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~ 491 (704)
..-+.|+|+++.++.+.+.+++++-++|+++ +.--+||||++ +++|-+|++.|+.++.+
T Consensus 170 ~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~-kkGkl~iv~~~------------gelva~~~rtDl~k~~~ 228 (503)
T KOG2550|consen 170 SLLVSDVMTKNPVTGAQGITLKEANEILKKI-KKGKLPVVDDK------------GELVAMLSRTDLMKNRD 228 (503)
T ss_pred cchhhhhcccccccccccccHHHHHHHHHhh-hcCCcceeccC------------CceeeeeehhhhhhhcC
Confidence 3458999999999999999999999999998 56679999988 89999999999976543
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.21 Score=55.30 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=46.3
Q ss_pred ccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCC
Q psy6631 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLL 488 (704)
Q Consensus 422 ~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~ 488 (704)
.+++.|.+++.++.+++++++++..+.++ .+. +||||++ ++++|+|++.+++.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~~~~------------~~~~g~i~~~~~~~ 355 (363)
T TIGR01186 303 GLQDVLIDDIYTVDAGTLLRETVRKVLKA-GIK-VPVVDED------------QRLVGIVTRGSLVD 355 (363)
T ss_pred chhhhhccCCceECCCCcHHHHHHHHHhC-CCC-EEEECCC------------CcEEEEEEHHHHHH
Confidence 47788888889999999999999999987 566 9999988 89999999887753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=85.45 E-value=0.61 Score=52.33 Aligned_cols=53 Identities=8% Similarity=0.023 Sum_probs=45.3
Q ss_pred ccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCC
Q psy6631 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLL 488 (704)
Q Consensus 422 ~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~ 488 (704)
.+++.|.++..++.+++++++++..+.++ . ..+||||++ ++++|+|++.+++.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~------------~~~~g~~~~~~~~~ 390 (400)
T PRK10070 338 GLDAALIDAPLAVDAQTPLSELLSHVGQA-P-CAVPVVDED------------QQYVGIISKGMLLR 390 (400)
T ss_pred chhhhhccCCceeCCCCCHHHHHHHHHhC-C-CcEEEECCC------------CcEEEEEEHHHHHH
Confidence 47777888889999999999999999876 4 449999987 89999999888754
|
|
| >smart00116 CBS Domain in cystathionine beta-synthase and other proteins | Back alignment and domain information |
|---|
Probab=83.69 E-value=0.3 Score=35.31 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=31.8
Q ss_pred cccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 597 FGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 597 ~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+.|..++.++.+.|.....+.+ |+++++++++|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~g~i~~ 41 (49)
T smart00116 3 VTVSPDTTLEEALELLREHGIRRL--PVVDEEGRLVGIVTR 41 (49)
T ss_pred eEecCCCcHHHHHHHHHHhCCCcc--cEECCCCeEEEEEEH
Confidence 345677888888888877777776 999999999999987
|
Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. |
| >KOG0475|consensus | Back alignment and domain information |
|---|
Probab=82.08 E-value=2.3 Score=49.43 Aligned_cols=134 Identities=11% Similarity=0.007 Sum_probs=78.2
Q ss_pred ccccccccC--ceEEeCC-CCHHHHHHHhHh--cCCCceeecccCCCceEEeehHHHhh-hcCCCcccccccCchhhcCC
Q psy6631 498 YVEDFMVRD--VKYIWNN-MTYRDLKNLLKE--NRSLRVFPLVESSGKFEQMEIKRREE-RQRRPSRFEVTPAPDLLRGN 571 (704)
Q Consensus 498 ~V~dvM~~~--v~tV~~d-~sl~ea~~~m~~--~~rl~Vvpvv~~~~~~~~i~~~~~~~-~~~~~sr~~v~~~~~~l~~~ 571 (704)
++.+.|..+ ..++..+ ++++|+..+|.. ....||+-..|++..+|-+.++++.- .....+.++-...-+..-..
T Consensus 547 ~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~ 626 (696)
T KOG0475|consen 547 PVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFND 626 (696)
T ss_pred hhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCC
Confidence 343444433 4556665 899999999965 34455555556677788888665532 11111111111111111111
Q ss_pred CCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 572 PHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+.+...+..+.+ -.-.++++ .+++.+-++|..-..+.|...++++. .|++.|++.|+||.
T Consensus 627 ~~~~~~~~~~~~---~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~---~v~~~G~l~Giitk 687 (696)
T KOG0475|consen 627 PSPSAVAGIPSR---LDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQI---LVTKNGILLGIITK 687 (696)
T ss_pred CCccccCCCCCC---cCceeeccCCcccccccCcHHHHHHHHHhhCceEE---EEccCCeeEeeeeh
Confidence 101001111111 12446676 88888888999889999998898885 89999999999987
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.86 E-value=2.6 Score=45.61 Aligned_cols=107 Identities=11% Similarity=0.000 Sum_probs=68.5
Q ss_pred cccccccccccc--eEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccc
Q psy6631 419 YNVYVEDFMVRD--VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYN 496 (704)
Q Consensus 419 ~~~~V~diM~~~--v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~ 496 (704)
.-++++++|.+. ...-.+...-..+.+.+.+. ....+-+++.. ++.+|++...+....
T Consensus 272 ~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~------------~~~~g~v~~~~~~~~------- 331 (386)
T COG4175 272 RVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDE-GREYGYAVDRG------------NKFVGVVSIDSLVKA------- 331 (386)
T ss_pred heeeHHHhhcccccccccccccccchhhhhhhhc-cchhhHHHhcc------------CceeeEEeccchhcc-------
Confidence 346788888742 11112223333556666655 44445555544 679999987776432
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhh
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREE 551 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~ 551 (704)
.+.+++.++.+|+++.+...... ....|+.-+.|+++.+|.+++.....
T Consensus 332 -----~~~~~~~~v~~d~~~~~~~~~~~-~~~~p~aVvde~~r~vG~i~~~~vl~ 380 (386)
T COG4175 332 -----ALIDDVLTVDADTPLSEILARIR-QAPCPVAVVDEDGRYVGIISRGELLE 380 (386)
T ss_pred -----cccccccccCccchHHHHHHHHh-cCCCceeEEcCCCcEEEEecHHHHHH
Confidence 46677899999999999998884 45555555555677788887776544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 704 | ||||
| 3org_A | 632 | Crystal Structure Of A Eukaryotic Clc Transporter L | 2e-32 |
| >pdb|3ORG|A Chain A, Crystal Structure Of A Eukaryotic Clc Transporter Length = 632 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632 | Back alignment and structure |
|---|
Score = 323 bits (829), Expect = e-101
Identities = 99/362 (27%), Positives = 180/362 (49%), Gaps = 44/362 (12%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVL+SIE ++ ++ +W+G +A+ GA V+ Y + AF TNF
Sbjct: 177 GVLYSIETIASFYLVQAFWKGVLSALSGAIVYE----LLYTTPLVEAFEGTNFDA-SDVS 231
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
+ ++A++G + G GA ++ R R+ + NR+ G+V L A+++
Sbjct: 232 RTQTLLYAILGALMGVLGALFIRCVRSIYELRMRH-----YPGTNRYFLVGVVALFASAL 286
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFM 282
+P L L+ ++ LF + + + L
Sbjct: 287 QYPFRLFA-----LDPRATINDLFKAVPLYQT----------------DHFGWTELILMP 325
Query: 283 LYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGY 342
+ +I ++ +P+P+G F+P F IGA FGR+ GE++ + F + I PG Y
Sbjct: 326 IIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGNAIV---------PGSY 376
Query: 343 ATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSIILI 402
A VGAAAF+ VT +S +VI+FE+TGQI H++PV+I+VL++ V SLY++++L+
Sbjct: 377 AVVGAAAFTAGVTRALSCAVIIFEVTGQIRHLVPVLISVLLAVIVGNAFNRSLYETLVLM 436
Query: 403 KKLPYLPDLLPSSSGIYNVYVEDFM--VRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE 460
K LPY+P L S + + M + +++ + + +K +L++ + VFP+++
Sbjct: 437 KHLPYMPILRRDRS--PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVID 494
Query: 461 SS 462
++
Sbjct: 495 AN 496
|
| >3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 1e-14
Identities = 34/173 (19%), Positives = 75/173 (43%), Gaps = 7/173 (4%)
Query: 463 VAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFM--VRDVKYIWNNMTYRDLK 520
V SLY++++L+K LPY+P L S + + M + +++ + + +K
Sbjct: 421 VGNAFNRSLYETLVLMKHLPYMPILRRDRS--PEMTAREIMHPIEGEPHLFPDSEPQHIK 478
Query: 521 NLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSD 580
+L++ + VFP+++++G I R+E R E P P + A+
Sbjct: 479 GILEKFPNRLVFPVIDANGYLLGA-ISRKEIVDRLQHVLEDVPEPIAGHRTLVLLDAADL 537
Query: 581 NIPRTENLDG-PQFCPVFGCQPKKSILKKTNSFSL-KNFSPMLTPNVTPYTTV 631
+ +D P + ++L+ T+S + + SP++ + + +
Sbjct: 538 SENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQL 590
|
| >1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ... Length = 465 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 8e-25
Identities = 49/300 (16%), Positives = 94/300 (31%), Gaps = 48/300 (16%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
G+LF IE + R G + ++ F +E + +
Sbjct: 196 GILFIIEE--MRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGKLSD-----AP 248
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
L ++ ++G++ G G + + +++ L G + L
Sbjct: 249 LNTLWLYLILGIIFGIFGPIFNKW---VLGMQDLLHRVHGGNITKWVLMGGAIGGL---- 301
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFM 282
GL ++A T G + T L
Sbjct: 302 ---CGLLGFVAPA--------------TSGGGFNLIPI-------ATAGNFSMGMLVFIF 337
Query: 283 LYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGY 342
+ I +++ + P G F P+ +G G G + FP + G +
Sbjct: 338 VARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQ--------YHLEAGTF 389
Query: 343 ATVGAAAFSGAVTHT-ISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQP-SLYDSII 400
A G A A ++ +++ EMT I+P++I L + +A LY +I+
Sbjct: 390 AIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAIL 449
|
| >3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A Length = 466 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 1e-24
Identities = 39/300 (13%), Positives = 90/300 (30%), Gaps = 51/300 (17%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GV E ++ R+ + + + G + ++ + + +
Sbjct: 191 GVALIGEE--MHPRFRSQTLAYHSLLFGCVMATIILRMIRGQSAIISLTEFKR-----VP 243
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
L +F ++G++ G G + + ++ K + G ++ + S+
Sbjct: 244 LDSLWMFIILGILFGVMGYTFNRG---LFKVLDWFDRLPPLATKWKGFLLGSIIGI-LSL 299
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFM 282
+ + F+ F +L
Sbjct: 300 FPLPLTD-------GGDNAVLWAFN------SQSH-----------------FSTLILVF 329
Query: 283 LYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGY 342
++ ++I G F P+ I + + L FP P
Sbjct: 330 CGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQ--------IPEPAVM 381
Query: 343 ATVGAAAFSGAVTHT-ISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQP-SLYDSII 400
A G A A ++ ++ EMT I+P+++ L+++ VA L +Y ++
Sbjct: 382 AIAGMGALVAATVRAPLTAILLTIEMTDNYFVILPLLVTCLVASVVAEALGGKPIYTVLL 441
|
| >2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 Length = 250 | Back alignment and structure |
|---|
Score = 88.2 bits (217), Expect = 1e-19
Identities = 47/225 (20%), Positives = 83/225 (36%), Gaps = 20/225 (8%)
Query: 485 PDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQM 544
P+L SS+ YN+ V D MVRDV I + TY DL ++L++ + L+ FP V++ +
Sbjct: 1 PELSWSSANKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTK-LKFFPFVDTPDTNTLL 59
Query: 545 EIKRREE------RQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPRTENLDGPQFCPVFG 598
R E R+ R + A + +G + +S + G
Sbjct: 60 GSIDRTEVEGLLQRRISAYRRQPAAAAEADEEGRNGETGASFTGEAESSFAYIDQEDAEG 119
Query: 599 CQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESRIRMAFEAIFHKSATLQDANPD 658
Q + K + + SP+ T + + + + + F + TL++
Sbjct: 120 QQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEEMLTLEEIYRW 179
Query: 659 PESGREALLSDHCGQTNTSNVRIVPPSPGPFKKVQLGTGMKLLKI 703
+ + ++ N PF QL G L K
Sbjct: 180 EQREKNVVV----------NFETCRIDQSPF---QLVEGTSLQKT 211
|
| >2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 Length = 250 | Back alignment and structure |
|---|
Score = 80.5 bits (197), Expect = 4e-17
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 409 PDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQ 468
P+L SS+ YN+ V D MVRDV I + TY DL ++L++ + L+ FP V++ L
Sbjct: 1 PELSWSSANKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTK-LKFFPFVDTPDTNTLL 59
Query: 469 PSL 471
S+
Sbjct: 60 GSI 62
|
| >2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 2e-08
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 409 PDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 462
P +L + G ++V VE FM + + + ++ ++ + +PLVES+
Sbjct: 1 PRILGRNIGSHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTD-VTEYPLVEST 53
|
| >2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 2e-08
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 485 PDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 538
P +L + G ++V VE FM + + + ++ ++ + +PLVES+
Sbjct: 1 PRILGRNIGSHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTD-VTEYPLVEST 53
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 6e-07
Identities = 86/636 (13%), Positives = 175/636 (27%), Gaps = 230/636 (36%)
Query: 12 SSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTVCCSAL-KSPQCISPSE 70
L N+ + E+++ + T +++ L Q +
Sbjct: 85 EVLRINYKFLMSPIKTEQRQ-----PSMMTRMYIE---------QRDRLYNDNQVFAKYN 130
Query: 71 ITGEDSLTKIEKF-----PEGRAPLVVYEFL---KGALYKGVLFSIEVTTVY-FAIRNYW 121
++ K+ + P +++ L K + V S +V F I +W
Sbjct: 131 VSRLQPYLKLRQALLELRPAKN--VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--FW 186
Query: 122 RGFFTAVCGATVFRLLAVWFYN---EETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGF 178
TV +L Y T R+ +N + EL
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--------- 237
Query: 179 GGAGYVWSHRQYV---LFMR--RNKK-MNAFLQKNRFLYPGIVVLLAT---SVSFPLGLG 229
+ Y L + +N K NAF + +LL T V+ L
Sbjct: 238 ------LKSKPYENCLLVLLNVQNAKAWNAFNLSCK-------ILLTTRFKQVTDFLSAA 284
Query: 230 KYMAGDLN------THDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFML 283
L+ T D++ SL + + ++ L
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCR----PQD---LPR-----------EVL--- 323
Query: 284 YTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYA 343
+T P ++ +I E +R DG+ +
Sbjct: 324 ---------TTNP---------RRLS-----IIAE--SIR--DGLATWDN--------WK 348
Query: 344 TVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSIILIK 403
V +T I S+ +L+P+ Y +
Sbjct: 349 HVNCD----KLTTIIESSL--------------------------NVLEPAEYRK--MFD 376
Query: 404 KLPYLPDLLPSSSGIYNVYV-EDFMVRDVKYIWNNMTYRDLKNLLKE--NRSL------- 453
+L P + ++ + IW ++ D+ ++ + SL
Sbjct: 377 RLSVFPP---------SAHIPTILLSL----IWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 454 RVFPL----VESSVAALLQPSLYDSII----LIKKLPYLPDLLPSSSGIY---------- 495
+ +E V + +L+ SI+ + K DL+P Y
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS-DDLIPPYLDQYFYSHIGHHLK 482
Query: 496 ------------NVYVE-DFM---VRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSG 539
V+++ F+ +R WN + N L++ + + + + ++
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG--SILNTLQQLKFYKPY-ICDNDP 539
Query: 540 KFEQM--EIKRREERQRRPSRFEVTPAPDLLRGNPH 573
K+E++ I F +L+ +
Sbjct: 540 KYERLVNAIL----------DFLPKIEENLICS-KY 564
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 3e-06
Identities = 66/450 (14%), Positives = 130/450 (28%), Gaps = 150/450 (33%)
Query: 133 VFRLLAVWF---YNEETMRAFFPTNFTMDFPF----------DPQELTVFALIGVVCGFG 179
RL W EE ++ F +++ F P +T
Sbjct: 64 TLRLF--WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM---------- 111
Query: 180 GAGYV------WSHRQYV--LFMRRNKKMNAFLQKNRFLY-----PGIVV--LLATSVSF 224
Y+ ++ Q + R + L++ L +++ +L
Sbjct: 112 ---YIEQRDRLYNDNQVFAKYNVSRLQPYLK-LRQA--LLELRPAKNVLIDGVL------ 159
Query: 225 PLGLGK-YMAGD-LNTHDQLSSLFSNFTW-TKGHFTVEEQEVLKHWTTRNTDVFVSLACF 281
G GK ++A D ++ + W + + VL+
Sbjct: 160 --GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN-SPETVLE---------------- 200
Query: 282 MLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFP------DGITHGKFIA 335
ML ++ I + S +I + + + + + + K
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 336 PIIPGGYATVGAAAFSGA----VTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALL 391
AF+ + +T T V F THI + + L
Sbjct: 261 -------------AFNLSCKILLT-TRFKQVTDFLSAATTTHIS-------LDHHSMTLT 299
Query: 392 QPSLYDSIILIKKLPYLPDLLPSS---------SGIYNVYVEDFMVRDVKYIWNNMTYRD 442
+ +L+K L P LP S I E +RD W+N + +
Sbjct: 300 PDEVKS--LLLKYLDCRPQDLPREVLTTNPRRLSII----AE--SIRDGLATWDNWKHVN 351
Query: 443 LKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYV-ED 501
L ++ESS+ L+P+ Y + +L P + ++
Sbjct: 352 CDKLTT---------IIESSLNV-LEPAEYRK--MFDRLSVFPP---------SAHIPTI 390
Query: 502 FMVRDVKYIWNNMTYRDLKNLLKE--NRSL 529
+ IW ++ D+ ++ + SL
Sbjct: 391 LLSL----IWFDVIKSDVMVVVNKLHKYSL 416
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 2e-05
Identities = 48/386 (12%), Positives = 108/386 (27%), Gaps = 130/386 (33%)
Query: 365 FEMTGQITH----IIPVMIAVLISN----AVAALLQPSL----YDSIIL----IKKLPYL 408
FE G+ + I+ V + N V + + L D II+ + L
Sbjct: 9 FET-GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 409 PDLLPSS-SGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALL 467
L S + +VE+ + + K++ + + E R
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT--------EQR---------------- 103
Query: 468 QPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENR 527
QPS+ + +Y+E RD
Sbjct: 104 QPSM----------------------MTRMYIE---------------QRD--------- 117
Query: 528 SLRVFPLVESSGKFEQMEIKRREE-RQRRPSRFEVTPAPDLLRGNPHG---------VSA 577
L + F + + R + + R + E+ PA ++L G
Sbjct: 118 -----RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI---DGVLGSGKTWVALD 169
Query: 578 SSDNIPRTENLDGPQFCPVFG-CQPKKSILKKTNSFSL---KNFSPMLTPNVTPYTTVTG 633
+ +D F C +++L+ N++ + +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 634 AESRIRMAFEAIFHKSA--TLQDANPDPE-------------SGREALLSDHCGQTNTSN 678
++ +R ++ +++ L + + + + R ++D T++
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 679 VRIVPPSPGPFKKVQLGTGMKLLKIW 704
+ + S + LL +
Sbjct: 289 ISLDHHSMT-LTPDE---VKSLLLKY 310
|
| >3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 20/161 (12%), Positives = 49/161 (30%), Gaps = 11/161 (6%)
Query: 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIK 479
+ +E M+++ + + E + + + LL + D L+
Sbjct: 19 GMNIETLMIKNPPILSKEDRLGSAFKKINEGG-IGRIIVANEKIEGLL--TTRD---LLS 72
Query: 480 KLPYLPDLLPSSSGIY---NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE 536
+ S +Y + D+M + ++N N++ P+V+
Sbjct: 73 TVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRN-FGSLPVVD 131
Query: 537 SSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSA 577
+ K + + RE E+ P + +
Sbjct: 132 INDKPVGI-VTEREFLLLYKDLDEIFPVKVFMSTKVQTIYK 171
|
| >3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 20/143 (13%), Positives = 47/143 (32%), Gaps = 17/143 (11%)
Query: 401 LIKKLPYLPDLLPSSSGIY---NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFP 457
L+ + S +Y + D+M + ++N N++ P
Sbjct: 70 LLSTVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRN-FGSLP 128
Query: 458 LVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYR 517
+V+ + + + + + L ++ P V+ FM V+ I+ +
Sbjct: 129 VVDINDKPVGIVTERE---FLLLYKDLDEIFP---------VKVFMSTKVQTIYKEVRLD 176
Query: 518 DLKNLLKENRSLRVFPLVESSGK 540
L+ R P+++ K
Sbjct: 177 QAVKLMLRRG-FRRLPVIDDDNK 198
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 3e-05
Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 423 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SVAALLQPSLYDSIILIKKL 481
++D++ RDV +D+ + N R P+V + ++ + D I L+
Sbjct: 150 IDDYITRDVIVATPGERLKDVARTMVRNG-FRRLPVVSEGRLVGII--TSTDFIKLLGSD 206
Query: 482 PYLPDLLPSSSG-IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGK 540
+ + I NV +E+ M RDV + + ++ N + P+V+ + +
Sbjct: 207 WAFNHMQTGNVREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTND-IGALPVVDENLR 265
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 16/132 (12%), Positives = 44/132 (33%), Gaps = 15/132 (11%)
Query: 418 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES---------SVAALLQ 468
++ ++ + + ++ T R + EN+ R+ P+V + + ++
Sbjct: 1 MFVRVMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRL-PVVNAGNNKVVGIITSMDIVD 59
Query: 469 PSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRS 528
S + + + + L + N V + M +V + N +
Sbjct: 60 FMGGGSKYNLIREKHERNFLAAI----NEPVREIMEENVITLKENADIDEAIETFLTKN- 114
Query: 529 LRVFPLVESSGK 540
+ P+V +
Sbjct: 115 VGGAPIVNDENQ 126
|
| >2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 7e-05
Identities = 16/123 (13%), Positives = 46/123 (37%), Gaps = 15/123 (12%)
Query: 423 VEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS--VAALLQPSLYDSIILI 478
V+ F++ V ++ +L + P++++S + L+ S+ ++
Sbjct: 13 VKPFLIPADKVAHVQPGNYLDHALLVLTKTG-YSAIPVLDTSYKLHGLI--SMTM---MM 66
Query: 479 KKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 538
+ L + + + VE+ M R++ + + + L+ + + +
Sbjct: 67 DAILGLERI--EFERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPFV---CVENDD 121
Query: 539 GKF 541
G F
Sbjct: 122 GYF 124
|
| >1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 11/120 (9%), Positives = 39/120 (32%), Gaps = 18/120 (15%)
Query: 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKL 481
V+ ++ +D + + T R+ + +++ + + + + ++ + L
Sbjct: 14 KVKKWVTQDFPMVEESATVRECLHRMRQYQ-TNECIVKDRE-------GHFRGVVNKEDL 65
Query: 482 PYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKF 541
L + V + + ++ L E++ P+V+ +
Sbjct: 66 LDLDL---------DSSVFNKVSLPDFFVHEEDNITHALLLFLEHQ-EPYLPVVDEEMRL 115
|
| >1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 16/123 (13%), Positives = 40/123 (32%), Gaps = 15/123 (12%)
Query: 423 VEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS--VAALLQPSLYDSIILI 478
V FM+ V ++ +L + P+++ S + L+ ++
Sbjct: 16 VGQFMIEADKVAHVQVGNNLEHALLVLTKTG-YTAIPVLDPSYRLHGLI--GTNM---IM 69
Query: 479 KKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 538
+ L + + + VE+ M+ D+ + N ++ N + +
Sbjct: 70 NSIFGLERI--EFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGFV---CVENDE 124
Query: 539 GKF 541
F
Sbjct: 125 QVF 127
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 704 | |||
| 3org_A | 632 | CMCLC; transporter, transport protein; 3.50A {Cyan | 100.0 | |
| 3nd0_A | 466 | SLL0855 protein; CLC family CL-/H+ antiporter, CLC | 100.0 | |
| 1ots_A | 465 | Voltage-gated CLC-type chloride channel ERIC; CLC | 100.0 | |
| 4ene_A | 446 | CLC-EC1, H(+)/CL(-) exchange transporter CLCA; mem | 100.0 | |
| 3ddj_A | 296 | CBS domain-containing protein; structural genomics | 99.62 | |
| 3kh5_A | 280 | Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a | 99.6 | |
| 2yzq_A | 282 | Putative uncharacterized protein PH1780; sheet/hel | 99.57 | |
| 2yzq_A | 282 | Putative uncharacterized protein PH1780; sheet/hel | 99.56 | |
| 4esy_A | 170 | CBS domain containing membrane protein; structural | 99.53 | |
| 3org_A | 632 | CMCLC; transporter, transport protein; 3.50A {Cyan | 99.52 | |
| 3ddj_A | 296 | CBS domain-containing protein; structural genomics | 99.49 | |
| 3kh5_A | 280 | Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a | 99.46 | |
| 3t4n_C | 323 | Nuclear protein SNF4; CBS domain, nucleotide bindi | 99.42 | |
| 2v8q_E | 330 | 5'-AMP-activated protein kinase subunit gamma-1; p | 99.39 | |
| 3nqr_A | 127 | Magnesium and cobalt efflux protein CORC; structur | 99.32 | |
| 3oi8_A | 156 | Uncharacterized protein; structural genomics, PSI- | 99.32 | |
| 3gby_A | 128 | Uncharacterized protein CT1051; CBS domain, struct | 99.32 | |
| 3jtf_A | 129 | Magnesium and cobalt efflux protein; CBS domain, C | 99.32 | |
| 2qrd_G | 334 | Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, | 99.32 | |
| 2v8q_E | 330 | 5'-AMP-activated protein kinase subunit gamma-1; p | 99.31 | |
| 3k2v_A | 149 | Putative D-arabinose 5-phosphate isomerase; KPSF-l | 99.31 | |
| 3lfr_A | 136 | Putative metal ION transporter; CBS, AMP, PSI, MCS | 99.3 | |
| 4gqw_A | 152 | CBS domain-containing protein CBSX1, chloroplasti; | 99.3 | |
| 2d4z_A | 250 | Chloride channel protein; CLC chloride channel cyt | 99.3 | |
| 3kpb_A | 122 | Uncharacterized protein MJ0100; CBS domain, S-aden | 99.3 | |
| 3lv9_A | 148 | Putative transporter; CBS domain, PSI, MCSG, struc | 99.3 | |
| 2p9m_A | 138 | Hypothetical protein MJ0922; structural genomics, | 99.3 | |
| 2yzi_A | 138 | Hypothetical protein PH0107; sheet/helix/sheet/she | 99.29 | |
| 3fhm_A | 165 | Uncharacterized protein ATU1752; CBS domain, proka | 99.29 | |
| 1pbj_A | 125 | Hypothetical protein; structural genomics, domain, | 99.28 | |
| 2o16_A | 160 | Acetoin utilization protein ACUB, putative; struct | 99.28 | |
| 2rih_A | 141 | Conserved protein with 2 CBS domains; bateman doma | 99.28 | |
| 2ef7_A | 133 | Hypothetical protein ST2348; CBS-domain, structura | 99.28 | |
| 1y5h_A | 133 | Hypothetical protein RV2626C; CBS domain, unknown | 99.28 | |
| 3hf7_A | 130 | Uncharacterized CBS-domain protein; CSB-domain PAI | 99.28 | |
| 3lqn_A | 150 | CBS domain protein; csgid, structural genomics, un | 99.27 | |
| 3t4n_C | 323 | Nuclear protein SNF4; CBS domain, nucleotide bindi | 99.26 | |
| 3i8n_A | 130 | Uncharacterized protein VP2912; APC64273.1, vibrio | 99.26 | |
| 3sl7_A | 180 | CBS domain-containing protein CBSX2; CBS-PAIR prot | 99.26 | |
| 3fv6_A | 159 | YQZB protein; CBS domain dimer, metabolism regulat | 99.25 | |
| 3lhh_A | 172 | CBS domain protein; structural genomics, PSI-2, pr | 99.24 | |
| 2pfi_A | 164 | Chloride channel protein CLC-Ka; cystathionine bet | 99.24 | |
| 2rc3_A | 135 | CBS domain; in SITU proteolysis, BR, structural ge | 99.24 | |
| 3k6e_A | 156 | CBS domain protein; streptococcus pneumoniae TIGR4 | 99.22 | |
| 2j9l_A | 185 | Chloride channel protein 5; ION channel, ION trans | 99.22 | |
| 1pvm_A | 184 | Conserved hypothetical protein TA0289; structural | 99.22 | |
| 3oco_A | 153 | Hemolysin-like protein containing CBS domains; str | 99.22 | |
| 2emq_A | 157 | Hypothetical conserved protein; CBS domains, NPPSF | 99.21 | |
| 2qrd_G | 334 | Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, | 99.21 | |
| 1o50_A | 157 | CBS domain-containing predicted protein TM0935; CB | 99.21 | |
| 1yav_A | 159 | Hypothetical protein BSU14130; cystathionine beta | 99.2 | |
| 3ctu_A | 156 | CBS domain protein; structural genomics, PSI-2, pr | 99.18 | |
| 1vr9_A | 213 | CBS domain protein/ACT domain protein; structural | 99.17 | |
| 3kxr_A | 205 | Magnesium transporter, putative; cystathionine bet | 99.16 | |
| 4fry_A | 157 | Putative signal-transduction protein with CBS DOM; | 99.14 | |
| 2d4z_A | 250 | Chloride channel protein; CLC chloride channel cyt | 99.13 | |
| 2uv4_A | 152 | 5'-AMP-activated protein kinase subunit gamma-1; t | 99.09 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 99.08 | |
| 2nyc_A | 144 | Nuclear protein SNF4; bateman2 domain, AMP kinase, | 99.07 | |
| 3l2b_A | 245 | Probable manganase-dependent inorganic pyrophospha | 99.03 | |
| 3ocm_A | 173 | Putative membrane protein; structural genomics, PS | 99.03 | |
| 2oux_A | 286 | Magnesium transporter; 10001B, structural genomics | 98.98 | |
| 2yvy_A | 278 | MGTE, Mg2+ transporter MGTE; membrane protein, tra | 98.96 | |
| 2zy9_A | 473 | Mg2+ transporter MGTE; membrane protien, metal tra | 98.85 | |
| 4esy_A | 170 | CBS domain containing membrane protein; structural | 98.85 | |
| 3gby_A | 128 | Uncharacterized protein CT1051; CBS domain, struct | 98.85 | |
| 3lv9_A | 148 | Putative transporter; CBS domain, PSI, MCSG, struc | 98.83 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 98.82 | |
| 3lhh_A | 172 | CBS domain protein; structural genomics, PSI-2, pr | 98.8 | |
| 3jtf_A | 129 | Magnesium and cobalt efflux protein; CBS domain, C | 98.79 | |
| 3hf7_A | 130 | Uncharacterized CBS-domain protein; CSB-domain PAI | 98.77 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 98.76 | |
| 3nqr_A | 127 | Magnesium and cobalt efflux protein CORC; structur | 98.72 | |
| 2ef7_A | 133 | Hypothetical protein ST2348; CBS-domain, structura | 98.72 | |
| 3lfr_A | 136 | Putative metal ION transporter; CBS, AMP, PSI, MCS | 98.7 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 98.7 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 98.67 | |
| 4gqw_A | 152 | CBS domain-containing protein CBSX1, chloroplasti; | 98.67 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 98.66 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 98.66 | |
| 3i8n_A | 130 | Uncharacterized protein VP2912; APC64273.1, vibrio | 98.65 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 98.64 | |
| 3k6e_A | 156 | CBS domain protein; streptococcus pneumoniae TIGR4 | 98.62 | |
| 3kpb_A | 122 | Uncharacterized protein MJ0100; CBS domain, S-aden | 98.62 | |
| 1ots_A | 465 | Voltage-gated CLC-type chloride channel ERIC; CLC | 98.62 | |
| 3kxr_A | 205 | Magnesium transporter, putative; cystathionine bet | 98.62 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 98.62 | |
| 3oi8_A | 156 | Uncharacterized protein; structural genomics, PSI- | 98.62 | |
| 2rih_A | 141 | Conserved protein with 2 CBS domains; bateman doma | 98.6 | |
| 3lqn_A | 150 | CBS domain protein; csgid, structural genomics, un | 98.59 | |
| 3fv6_A | 159 | YQZB protein; CBS domain dimer, metabolism regulat | 98.59 | |
| 1o50_A | 157 | CBS domain-containing predicted protein TM0935; CB | 98.56 | |
| 3nd0_A | 466 | SLL0855 protein; CLC family CL-/H+ antiporter, CLC | 98.55 | |
| 1pbj_A | 125 | Hypothetical protein; structural genomics, domain, | 98.55 | |
| 2p9m_A | 138 | Hypothetical protein MJ0922; structural genomics, | 98.54 | |
| 2o16_A | 160 | Acetoin utilization protein ACUB, putative; struct | 98.53 | |
| 2rc3_A | 135 | CBS domain; in SITU proteolysis, BR, structural ge | 98.53 | |
| 3fhm_A | 165 | Uncharacterized protein ATU1752; CBS domain, proka | 98.52 | |
| 1pvm_A | 184 | Conserved hypothetical protein TA0289; structural | 98.52 | |
| 3ctu_A | 156 | CBS domain protein; structural genomics, PSI-2, pr | 98.52 | |
| 2emq_A | 157 | Hypothetical conserved protein; CBS domains, NPPSF | 98.52 | |
| 3sl7_A | 180 | CBS domain-containing protein CBSX2; CBS-PAIR prot | 98.51 | |
| 3oco_A | 153 | Hemolysin-like protein containing CBS domains; str | 98.51 | |
| 4fry_A | 157 | Putative signal-transduction protein with CBS DOM; | 98.49 | |
| 3ghd_A | 70 | A cystathionine beta-synthase domain protein FUSE | 98.48 | |
| 1yav_A | 159 | Hypothetical protein BSU14130; cystathionine beta | 98.48 | |
| 3k2v_A | 149 | Putative D-arabinose 5-phosphate isomerase; KPSF-l | 98.46 | |
| 2yzi_A | 138 | Hypothetical protein PH0107; sheet/helix/sheet/she | 98.41 | |
| 1vr9_A | 213 | CBS domain protein/ACT domain protein; structural | 98.4 | |
| 4ene_A | 446 | CLC-EC1, H(+)/CL(-) exchange transporter CLCA; mem | 98.4 | |
| 1y5h_A | 133 | Hypothetical protein RV2626C; CBS domain, unknown | 98.39 | |
| 2pfi_A | 164 | Chloride channel protein CLC-Ka; cystathionine bet | 98.39 | |
| 3ocm_A | 173 | Putative membrane protein; structural genomics, PS | 98.39 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 98.38 | |
| 3l2b_A | 245 | Probable manganase-dependent inorganic pyrophospha | 98.33 | |
| 2nyc_A | 144 | Nuclear protein SNF4; bateman2 domain, AMP kinase, | 98.3 | |
| 2oux_A | 286 | Magnesium transporter; 10001B, structural genomics | 98.29 | |
| 2yvy_A | 278 | MGTE, Mg2+ transporter MGTE; membrane protein, tra | 98.28 | |
| 2uv4_A | 152 | 5'-AMP-activated protein kinase subunit gamma-1; t | 98.25 | |
| 2j9l_A | 185 | Chloride channel protein 5; ION channel, ION trans | 98.24 | |
| 3fio_A | 70 | A cystathionine beta-synthase domain protein fused | 98.16 | |
| 2zy9_A | 473 | Mg2+ transporter MGTE; membrane protien, metal tra | 98.04 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 98.0 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 97.81 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 97.74 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 97.71 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 97.7 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 97.65 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 97.46 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 97.43 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 97.17 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 96.82 | |
| 3ghd_A | 70 | A cystathionine beta-synthase domain protein FUSE | 96.69 | |
| 3fio_A | 70 | A cystathionine beta-synthase domain protein fused | 93.97 |
| >3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-68 Score=622.57 Aligned_cols=455 Identities=25% Similarity=0.410 Sum_probs=353.9
Q ss_pred hhhhccccceE--Eeeeeehh-------------hhhhhhcccccc--cccCCCcccccccccccccCCCCCcccchhhh
Q psy6631 33 LKHWTTRNTDV--FVSLACFM-------------LYTVCCSALKSP--QCISPSEITGEDSLTKIEKFPEGRAPLVVYEF 95 (704)
Q Consensus 33 ~~~~~~~~~~i--~~~~~~~~-------------h~~~~~a~~~~~--~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaA 95 (704)
+++++..|+.+ +++.++++ |+|+++|+.+++ ++. ... .+.-.++..+ .||+|||+||
T Consensus 96 ~~~~~~~~~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~~~~f~---~~~-~~~~~~r~ll--~aGaaAG~aa 169 (632)
T 3org_A 96 MRSALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRLGVFK---ELC-TDRALRLQTL--AAACAVGLAS 169 (632)
T ss_dssp HGGGGSHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTTSHHHH---HHH-HSHHHHHHHH--HHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHhhhhhhc---ccc-CCHHHHHHHH--HHHHHHHHHH
Confidence 56778888887 55555555 999999998877 442 111 1111122222 2699999999
Q ss_pred hhcccccccccceeeeccccchHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHH
Q psy6631 96 LKGALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVV 175 (704)
Q Consensus 96 aF~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~ 175 (704)
+|||||||++|++||++++|+.+++|++++||++|+++++.+.. ..+...+|..+|..+.+|+..|+ +|+++|++
T Consensus 170 aF~aPlaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l-~~~~lGi~ 244 (632)
T 3org_A 170 SFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELLYT----TPLVEAFEGTNFDASDVSRTQTL-LYAILGAL 244 (632)
T ss_dssp HHTCHHHHHHHHHHHTCSEEETTHHHHHHHHHHHHHHHTTC----------------------CCCCSCTH-HHHHHHHH
T ss_pred HhCCccHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc----CccccccccccccccCCCcHHHH-HHHHHHHH
Confidence 99999999999999999999999999999999999999987643 22222356555554567788899 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHHHHHHHHHHHHHHhhhhhccccCCCCCcHHHHHHhhhcCccCCCC
Q psy6631 176 CGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSVSFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGH 255 (704)
Q Consensus 176 ~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~p~l~gllvg~l~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~ 255 (704)
||++|++|+++++++..+ | .+++++.+++++++++++++++++||.+.|.+ ++++.+..+|++++|.+..
T Consensus 245 ~Gl~g~~f~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~l~~p~~~g~~-----~~~~~i~~l~~~~~~~~~~ 314 (632)
T 3org_A 245 MGVLGALFIRCVRSIYEL-R----MRHYPGTNRYFLVGVVALFASALQYPFRLFAL-----DPRATINDLFKAVPLYQTD 314 (632)
T ss_dssp HHHHHHHHHHHHHHHHHH-H----HHSSTTCCTHHHHHHHHHHHHHHTTTC-----------CHHHHHHHHSCC------
T ss_pred HHHHHHHHHHHHHHHHHH-H----HHhhcchhHHHHHHHHHHHHHHHHHHHHhcCC-----cHHHHHHHHHcCCcccccc
Confidence 999999999999887644 1 23445667899999999999988999886653 4578999999887654311
Q ss_pred cchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccC
Q psy6631 256 FTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIA 335 (704)
Q Consensus 256 ~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~ 335 (704)
...+..|++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.++|.+
T Consensus 315 ----------------~~~~~~l~~~~~~k~~~t~~s~g~g~pGGif~P~l~iGA~~G~~~g~~~~~~~p~~-------- 370 (632)
T 3org_A 315 ----------------HFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGNA-------- 370 (632)
T ss_dssp --------------------CCSSHHHHHHHHHHHHHTTSSSBCBCHHHHHHHHHHHHHHHHHHHHHHHCTT--------
T ss_pred ----------------chhHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHhCCcc--------
Confidence 11122456788999999999999999999999999999999999999999999863
Q ss_pred CcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhcCCChHHHHHHHhcCCCCCCCCCCC
Q psy6631 336 PIIPGGYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSIILIKKLPYLPDLLPSS 415 (704)
Q Consensus 336 ~~~p~~yAlvGmaAf~aav~~~is~~viv~ElTG~~~~~lPimia~~is~~va~~l~~siy~~~l~~r~~p~l~~~~~~~ 415 (704)
.+|+.||++||||++||++|++++++|++||||++++++|+|+++++||++++.+++|+|+.+++.|++|++++..+.
T Consensus 371 -~~p~~~a~vGmaa~~~~v~~ap~t~vi~~E~tg~~~~~lpl~ia~~~a~~v~~~~~~~iY~~~~~~k~lp~l~~~~~~- 448 (632)
T 3org_A 371 -IVPGSYAVVGAAAFTAGVTRALSCAVIIFEVTGQIRHLVPVLISVLLAVIVGNAFNRSLYETLVLMKHLPYMPILRRD- 448 (632)
T ss_dssp -SCHHHHHHHHHHHHHHHHSCCTTHHHHHHHHTCCCSCSHHHHHHHHHHHHHHHHHCCCHHHHHHHHTTCCEEEEECTT-
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCcccccccc-
Confidence 479999999999999999996555679999999999999999999999999999999999999999999998765332
Q ss_pred ccccccccccccc--cceEEecCCCCHHHHHHHHH-hcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc
Q psy6631 416 SGIYNVYVEDFMV--RDVKYIWNNMTYRDLKNLLK-ENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS 492 (704)
Q Consensus 416 ~~l~~~~V~diM~--~~v~~v~~~~tl~ea~~~l~-~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~ 492 (704)
..++++|+|+|+ +++.+++++++++|+.+.++ ++ +++++||||++ ++++|+|+++|++.....
T Consensus 449 -~~~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~-~~~~~PVvd~~------------~~lvGiVt~~DL~~~l~~ 514 (632)
T 3org_A 449 -RSPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFP-NRLVFPVIDAN------------GYLLGAISRKEIVDRLQH 514 (632)
T ss_dssp -CCTTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHST-TCCEECBBCTT------------CBBCCEESHHHHTTTTTT
T ss_pred -ccccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcC-CcceEEEEecC------------CeEEEEEEHHHHHHHHHH
Confidence 237899999999 89999999999999999999 67 89999999977 799999999999754321
Q ss_pred c-------------------------------------------------ccccccccccccCceEEeCCCCHHHHHHHh
Q psy6631 493 G-------------------------------------------------IYNVYVEDFMVRDVKYIWNNMTYRDLKNLL 523 (704)
Q Consensus 493 ~-------------------------------------------------~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m 523 (704)
. ....+|+|+|++++.++++|+++.|+++.|
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M 594 (632)
T 3org_A 515 VLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLF 594 (632)
T ss_dssp C-------------------------------------------------------CCSCCCCCCEEETTCBHHHHHHHH
T ss_pred HhhhcccccccccceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHH
Confidence 1 001148899999999999999999999999
Q ss_pred HhcCCCceeecccCCCceEEeehHHH
Q psy6631 524 KENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 524 ~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
. .++.+.+||+|+++.+|.+++.|+
T Consensus 595 ~-~~~i~~lpVve~G~lvGIVT~~Dl 619 (632)
T 3org_A 595 V-MLMPSMIYVTERGKLVGIVEREDV 619 (632)
T ss_dssp H-HTCCSEEEEEETTEEEEEEEGGGT
T ss_pred H-hcCCCEEEEEECCEEEEEEehhhH
Confidence 5 577888999977766676666653
|
| >3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-46 Score=418.31 Aligned_cols=290 Identities=14% Similarity=0.161 Sum_probs=240.7
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeecccc--chHHHHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYF--AIRNYWRGFFTAVC 129 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~--~~~~~~~~f~aav~ 129 (704)
|+|+++++.+++++. .. +++ ++.-+ .||+|||+||+|||||||++|++||+.++| +.+.++|+++||++
T Consensus 149 qiGa~ig~~l~~~~~----~~-~~~--~r~ll--~aGaAAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~ 219 (466)
T 3nd0_A 149 QMGGSIGQMTGGWFK----AT-QEN--QRILI--AVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTLAYHSLLFGCVM 219 (466)
T ss_dssp HHHHHHHHHHHHHTT----CC-HHH--HHHHH--HHHHHHHHHHHHTCHHHHHHHHHSSSCCCCSSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC----CC-hhH--HHHHH--HHHHHHHHHHHhCCchHHHHHHHHhhhccccHHHHHHHHHHHHHHH
Confidence 999999999999874 11 111 11112 369999999999999999999999999888 45778899999999
Q ss_pred HHHHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchh
Q psy6631 130 GATVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRF 209 (704)
Q Consensus 130 a~~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~ 209 (704)
|+++++.+. +.++ .|..+. ...++..|+++++++|++||++|.+|++.+.+..+++++ +.+.+++
T Consensus 220 a~~v~~~~~----g~~~---~f~~~~--~~~~~~~~l~~~illGi~~Gl~g~lf~~~~~~~~~~~~~------~~~~~~~ 284 (466)
T 3nd0_A 220 ATIILRMIR----GQSA---IISLTE--FKRVPLDSLWMFIILGILFGVMGYTFNRGLFKVLDWFDR------LPPLATK 284 (466)
T ss_dssp HHHHHHHHT----CSSC---SSCCTT--CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------CCHHHHH
T ss_pred HHHHHHHHc----CCCC---ceecCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cccccHH
Confidence 999999873 2343 455432 113578899999999999999999999999887655442 1224578
Q ss_pred HHHHHHHHHHHHH--HhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHH
Q psy6631 210 LYPGIVVLLATSV--SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYI 287 (704)
Q Consensus 210 l~p~l~gllvg~l--~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~ 287 (704)
+++++++++++++ .+|..+|. +++.+++++++ +..+..|++++++|++
T Consensus 285 ~~~~l~g~~~g~l~~~~p~~~G~-------G~~~i~~~~~~-----------------------~~~~~~L~~~~~~K~~ 334 (466)
T 3nd0_A 285 WKGFLLGSIIGILSLFPLPLTDG-------GDNAVLWAFNS-----------------------QSHFSTLILVFCGRFL 334 (466)
T ss_dssp HHHHHHHHHHHHHTTSSSSCSSS-------SHHHHHHHTTS-----------------------CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-------cHHHHHHHHcC-----------------------CccHHHHHHHHHHHHH
Confidence 8899999999987 46776665 37888877753 1235577888999999
Q ss_pred HHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHH
Q psy6631 288 FSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFE 366 (704)
Q Consensus 288 ~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~E 366 (704)
+|++|+|+|+|||+|+|+|++||++|+++|.+++.++|.. ..+|+.||++||+|++++++| |+|+++|++|
T Consensus 335 ~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~--------~~~~~~~a~vGmaa~~a~v~~aPlt~ivlv~E 406 (466)
T 3nd0_A 335 LTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQ--------IPEPAVMAIAGMGALVAATVRAPLTAILLTIE 406 (466)
T ss_dssp HHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHHHCTTT--------CSSTHHHHHHTTSHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCceehHHHHHHHHHHHHHHHHHHHhCCcc--------ccCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999863 368999999999999999999 8999999999
Q ss_pred HhCCchhHHHHHHHHHHHHHHHhhcC-CChHHHHHHHh
Q psy6631 367 MTGQITHIIPVMIAVLISNAVAALLQ-PSLYDSIILIK 403 (704)
Q Consensus 367 lTG~~~~~lPimia~~is~~va~~l~-~siy~~~l~~r 403 (704)
|||++++++|+|+++++||++++.++ +|+||.++++-
T Consensus 407 ltg~~~~~lpl~ia~~iA~~v~~~~~~~~iY~~~l~r~ 444 (466)
T 3nd0_A 407 MTDNYFVILPLLVTCLVASVVAEALGGKPIYTVLLERT 444 (466)
T ss_dssp TTCCCTTHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHH
T ss_pred HHCChHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999999999985 79999998865
|
| >1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-46 Score=416.71 Aligned_cols=294 Identities=16% Similarity=0.196 Sum_probs=240.8
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeeccccchHH--HHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYFAIRN--YWRGFFTAVC 129 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~~~~~--~~~~f~aav~ 129 (704)
|+|+++++.+++++. .. +.-.++..+ .||+|||+||+|||||||++|++||+.++|+.+. ++++++||++
T Consensus 153 qiGa~ig~~l~~~~~----l~--~~~~~r~li--~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~ 224 (465)
T 1ots_A 153 QIGGNIGRMVLDIFR----LK--GDEARHTLL--ATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIM 224 (465)
T ss_dssp HHHHHHHHHHHHHTT----CC--SHHHHHHHH--HHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc----cC--CHHHHHHHH--HHHHHHHHHHHHCCchHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 999999999998773 11 111111112 2589999999999999999999999999998766 9999999999
Q ss_pred HHHHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchh
Q psy6631 130 GATVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRF 209 (704)
Q Consensus 130 a~~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~ 209 (704)
|+++++.+. +.++ .|..+.. ..++..++++++++|++||++|.+|++.+.+..+++++.+ +.-..+++
T Consensus 225 a~~v~~~~~----G~~~---~f~~~~~--~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~---~~~~~~~~ 292 (465)
T 1ots_A 225 STIMYRIFN----HEVA---LIDVGKL--SDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVH---GGNITKWV 292 (465)
T ss_dssp HHHHHHHHS----CSCC---SSCCCCC--CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHH
T ss_pred HHHHHHHHc----CCCc---eeecCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCchhHH
Confidence 999999863 2333 4543321 1245789999999999999999999999988876554321 11112345
Q ss_pred HHHHHHHHHHHHH--HhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHH
Q psy6631 210 LYPGIVVLLATSV--SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYI 287 (704)
Q Consensus 210 l~p~l~gllvg~l--~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~ 287 (704)
+++++++++++++ .+|..+|.+ ++.++.+|++ +..+..++.++++|++
T Consensus 293 ~~~~i~gl~~g~l~~~~P~~lG~G-------~~~i~~~~~~-----------------------~~~~~~l~~~~~~K~~ 342 (465)
T 1ots_A 293 LMGGAIGGLCGLLGFVAPATSGGG-------FNLIPIATAG-----------------------NFSMGMLVFIFVARVI 342 (465)
T ss_dssp HHHHHHHHHHHHHHHHCGGGSSCS-------TTHHHHHHHT-----------------------CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhcCCh-------HHHHHHHHcC-----------------------CchHHHHHHHHHHHHH
Confidence 8999999999976 468777653 6778877753 1234567788999999
Q ss_pred HHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHH
Q psy6631 288 FSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFE 366 (704)
Q Consensus 288 ~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~E 366 (704)
+|++|+|+|+|||+|+|+|++||++|+++|.+++.++|+. ..+|+.||++||+|++++++| |+|+++|++|
T Consensus 343 ~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~--------~~~~~~~alvGmaa~~a~v~raPlt~ivlv~E 414 (465)
T 1ots_A 343 TTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY--------HLEAGTFAIAGMGALLAASIRAPLTGIILVLE 414 (465)
T ss_dssp HHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHHHCGGG--------TCCHHHHHHHHHTHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHHHHCCcc--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999863 368999999999999999999 8999999999
Q ss_pred HhCCchhHHHHHHHHHHHHHHHhhcC-CChHHHHHHHh
Q psy6631 367 MTGQITHIIPVMIAVLISNAVAALLQ-PSLYDSIILIK 403 (704)
Q Consensus 367 lTG~~~~~lPimia~~is~~va~~l~-~siy~~~l~~r 403 (704)
|||++++++|+|+++++||++++.++ +|+|+.|++++
T Consensus 415 ltg~~~~llpl~ia~~iA~~v~~~~~~~~iY~~~l~~~ 452 (465)
T 1ots_A 415 MTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILART 452 (465)
T ss_dssp HHCCGGGHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999999999985 79999999876
|
| >4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=411.14 Aligned_cols=294 Identities=16% Similarity=0.198 Sum_probs=234.4
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeeccccch--HHHHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYFAI--RNYWRGFFTAVC 129 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~~~--~~~~~~f~aav~ 129 (704)
|+|+++++.+++++. .. ++-+|..-+ .||+|||+||+|||||||++|++||+.++|++ ++++|+++||++
T Consensus 138 qiGa~ig~~~~~~~~----~~--~~~~r~~ll--~aGaaAG~aaaF~aPlaGvlFalE~l~~~~~~~~~~~~~~~~as~~ 209 (446)
T 4ene_A 138 QIGGNIGRMVLDIFR----LK--GDEARHTLL--ATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIM 209 (446)
T ss_dssp HHHHHHHHHHHHHTT----CC--SHHHHHHHH--HHHHHHHHHHHHTCHHHHHHHHHHTTSCSSSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC----CC--HHHHHHHHH--HHHHHHHHHHHhCCcchHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 999999999998774 11 111111112 36999999999999999999999999988877 789999999999
Q ss_pred HHHHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchh
Q psy6631 130 GATVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRF 209 (704)
Q Consensus 130 a~~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~ 209 (704)
|+++++.+. +.++ .|..+.. ..++..++++++++|++||++|.+|++.+.+..+++++.+ +....+++
T Consensus 210 a~~v~~~~~----g~~~---~~~~~~~--~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~---~~~~~~~~ 277 (446)
T 4ene_A 210 STIMYRIFN----HEVA---LIDVGKL--SDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVH---GGNITKWV 277 (446)
T ss_dssp HHHHHHHTT----TTCC---SCCCCCC--CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHH
T ss_pred HHHHHHHHc----CCCc---eeecCCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccchhHHH
Confidence 999999863 2343 4543311 1246789999999999999999999999988776554321 11111122
Q ss_pred HHHHHHHHHHHHH--HhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHH
Q psy6631 210 LYPGIVVLLATSV--SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYI 287 (704)
Q Consensus 210 l~p~l~gllvg~l--~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~ 287 (704)
+.+.+++++++++ .+|..+|.+ ++.+++++++ +..+..|++++++|++
T Consensus 278 ~~~~l~g~~~g~l~~~~p~~~G~G-------~~~i~~~~~~-----------------------~~~~~~L~~~~~~K~~ 327 (446)
T 4ene_A 278 LMGGAIGGLCGLLGFVAPATSGGG-------FNLIPIATAG-----------------------NFSMGMLVFIFVARVI 327 (446)
T ss_dssp HHHHHHHHHHHHHHHHCGGGSSCC-------STHHHHHHTT-----------------------CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhcCCc-------HHHHHHHHcC-----------------------CchHHHHHHHHHHHHH
Confidence 3334566677765 568777653 6677766642 1234567788999999
Q ss_pred HHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHH
Q psy6631 288 FSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFE 366 (704)
Q Consensus 288 ~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~E 366 (704)
+|++|+|+|+|||+|+|+|++||++|+++|.+++.++|.. ..+|+.||++||+|++++++| |+|+++|++|
T Consensus 328 ~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~--------~~~~~~~a~vGmaa~~a~~~~aPlt~~vl~~E 399 (446)
T 4ene_A 328 TTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY--------HLEAGTFAIAGMGALLAASIRAPLTGIILVLE 399 (446)
T ss_dssp HHHHHHTTTCSSBSHHHHHHHHHHHHHHHHHHHHHHCGGG--------TCCHHHHHHHHHTHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHccCCCcchhHHHHHHHHHHHHHHHHHHHHhCCcc--------ccCHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 9999999999999999999999999999999999998863 368999999999999999998 8999999999
Q ss_pred HhCCchhHHHHHHHHHHHHHHHhhcC-CChHHHHHHHh
Q psy6631 367 MTGQITHIIPVMIAVLISNAVAALLQ-PSLYDSIILIK 403 (704)
Q Consensus 367 lTG~~~~~lPimia~~is~~va~~l~-~siy~~~l~~r 403 (704)
|||++++++|+|+++++||++++.++ +|+||.++++-
T Consensus 400 ltg~~~~~lpl~ia~~ia~~v~~~~~~~~iY~~~l~r~ 437 (446)
T 4ene_A 400 MTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILART 437 (446)
T ss_dssp HHCCGGGHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHCChhHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999999999995 79999988764
|
| >3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-16 Score=167.27 Aligned_cols=183 Identities=12% Similarity=0.141 Sum_probs=148.0
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccccc
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYV 499 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V 499 (704)
..+|+|+|++++.++.+++++.++++.|.++ +++.+||+|++ ++++|+++.+|++..........+|
T Consensus 92 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~-~~~~lpVvd~~------------~~lvGivt~~dl~~~~~~~~~~~~v 158 (296)
T 3ddj_A 92 TTPIIDYMTPNPVTVYNTSDEFTAINIMVTR-NFGSLPVVDIN------------DKPVGIVTEREFLLLYKDLDEIFPV 158 (296)
T ss_dssp TSBGGGTSEESCCCEETTSCHHHHHHHHHHH-TCSEEEEECTT------------SCEEEEEEHHHHGGGGGGSCCCCBH
T ss_pred cccHHHhccCCCEEEcCCCCHHHHHHHHHHc-CCCEEEEEcCC------------CcEEEEEeHHHHHHhhhcccccccH
Confidence 4579999999999999999999999999998 89999999877 7899999999998765555566799
Q ss_pred ccccccCceEEeCCCCHHHHHHHhHhcCCCceeeccc-CCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCC
Q psy6631 500 EDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE-SSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSAS 578 (704)
Q Consensus 500 ~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~-~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~ 578 (704)
+++|++++.++.+++++.++.+.|.+ .+...+||+| +++.+|.++..++..... ...+-+.. +...
T Consensus 159 ~~~m~~~~~~v~~~~~l~~~~~~m~~-~~~~~~~Vvd~~~~~~Givt~~dl~~~~~--~~~~~~~~-~~~~--------- 225 (296)
T 3ddj_A 159 KVFMSTKVQTIYKEVRLDQAVKLMLR-RGFRRLPVIDDDNKVVGIVTVVNAIKQLA--KAVDKLDP-DYFY--------- 225 (296)
T ss_dssp HHHSBCSCCCEETTSBHHHHHHHHHH-HTCSEEEEECTTSCEEEEEEHHHHHHHHH--HHHHHTCT-HHHH---------
T ss_pred HHhhcCCCeEECCCCCHHHHHHHHHH-cCCCEEEEEcCCCEEEEEEEHHHHHHHHH--HHHhhcCh-hhhc---------
Confidence 99999999999999999999999954 5677888888 467788888887654332 00000000 0000
Q ss_pred CCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 579 SDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 579 ~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..++|. ++.++.|++++.++...|...+++++ ||||++|+++|+||+
T Consensus 226 -------~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l--~Vvd~~g~~~Giit~ 276 (296)
T 3ddj_A 226 -------GKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSL--LILNKDNTIRGIITE 276 (296)
T ss_dssp -------TCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEE--EEECTTSCEEEEEEH
T ss_pred -------CcCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEE--EEECCCCeEEEEEcH
Confidence 013556676 88899999999999999999998887 999999999999999
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-16 Score=165.28 Aligned_cols=188 Identities=13% Similarity=0.117 Sum_probs=147.7
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccc-ccccc
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSG-IYNVY 498 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~-~~~~~ 498 (704)
..+|+|+|++++.++.+++++.++.+.|.++ +++.+||+|++ ++++|+++.+|++...... ....+
T Consensus 83 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~-~~~~~~Vvd~~------------~~~~Givt~~dl~~~~~~~~~~~~~ 149 (280)
T 3kh5_A 83 NEPVREIMEENVITLKENADIDEAIETFLTK-NVGGAPIVNDE------------NQLISLITERDVIRALLDKIDENEV 149 (280)
T ss_dssp TSBGGGTSBCSCCCEETTCBHHHHHHHHHHT-TCSEEEEECTT------------CBEEEEEEHHHHHHHHGGGSCTTCB
T ss_pred hhhHHHhcCCCCEEECCCCCHHHHHHHHHhC-CCCEEEEEcCC------------CEEEEEEEHHHHHHHHhhcCCCCCC
Confidence 4579999999999999999999999999998 89999999877 7899999999997543322 23458
Q ss_pred cccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCC
Q psy6631 499 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSAS 578 (704)
Q Consensus 499 V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~ 578 (704)
++++|++++.++.+++++.++.+.|.+ .+...+||+++++.+|.++..+...........+-.. .. .
T Consensus 150 v~~~m~~~~~~v~~~~~l~~~~~~~~~-~~~~~~~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~------~~--~---- 216 (280)
T 3kh5_A 150 IDDYITRDVIVATPGERLKDVARTMVR-NGFRRLPVVSEGRLVGIITSTDFIKLLGSDWAFNHMQ------TG--N---- 216 (280)
T ss_dssp SGGGCBCSCCCBCTTCBHHHHHHHHHH-HTCSEEEEEETTEEEEEEEHHHHHHHHTSHHHHHHHH------SC--C----
T ss_pred HHHHhCCCCeEECCCCcHHHHHHHHHH-cCCCEEEEEECCEEEEEEEHHHHHHHHhhhhhhhhhc------cc--c----
Confidence 999999999999999999999999954 5667788887778899999988765443221111000 00 0
Q ss_pred CCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 579 SDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 579 ~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..... ..+..++|+ ++.++.|++++.++...|...+++++ ||+|++|+++|+||+
T Consensus 217 ~~~~~--~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l--~Vvd~~g~~~Givt~ 272 (280)
T 3kh5_A 217 VREIT--NVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGAL--PVVDENLRIKGIITE 272 (280)
T ss_dssp THHHH--HCBHHHHSBSSCCCBCTTCBHHHHHHHHHHHTCCEE--EEECTTCBEEEEEEH
T ss_pred hhhhh--CCcHHHHhcCCCEEECCCCCHHHHHHHHHHCCCCEE--EEECCCCeEEEEEeH
Confidence 00000 013556676 88899999999999999999999887 999999999999987
|
| >2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-15 Score=157.06 Aligned_cols=201 Identities=13% Similarity=0.127 Sum_probs=142.4
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCC-CCc--ccccc
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLL-PSS--SGIYN 496 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~-~~~--~~~~~ 496 (704)
+.+++++|.+++.++.+++++.++.+.|.++ +.+.+||+|++ ++++|+++..|++. ... .....
T Consensus 59 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-~~~~~~Vvd~~------------~~~~Giit~~di~~~~~~~~~~~~~ 125 (282)
T 2yzq_A 59 EEQLAMLVKRDVPVVKENDTLKKAAKLMLEY-DYRRVVVVDSK------------GKPVGILTVGDIIRRYFAKSEKYKG 125 (282)
T ss_dssp -----CCCBSCCCEEETTSBHHHHHHHHHHH-TCSEEEEECTT------------SCEEEEEEHHHHHHHTTTTCSGGGG
T ss_pred cCCHHHHcCCCCcEECCCCcHHHHHHHHHHc-CCCEEEEEcCC------------CEEEEEEEHHHHHHHHHhccCCccc
Confidence 5689999999999999999999999999998 78999999977 78999999999976 433 23346
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhc---CCCccccc--ccCchhh-c
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQ---RRPSRFEV--TPAPDLL-R 569 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~---~~~sr~~v--~~~~~~l-~ 569 (704)
.+++++|++++.++.+++++.|+.+.|. .++...+||+|+ ++.+|.++..++.... ....+.++ .+....+ .
T Consensus 126 ~~v~~~m~~~~~~v~~~~~l~~~~~~~~-~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (282)
T 2yzq_A 126 VEIEPYYQRYVSIVWEGTPLKAALKALL-LSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILE 204 (282)
T ss_dssp CBSTTTSBSCCCCEETTSBHHHHHHHHH-TCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC------------------
T ss_pred CcHHHHhCCCCEEECCCCCHHHHHHHHH-HcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcc
Confidence 7899999999999999999999999995 566778899874 6678888888765221 00000000 0000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 570 GNPHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+... ...........+..++|+ ++.+++|++++.++...|...+++++ ||||++|+++|+||+
T Consensus 205 ~~~~~~-~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVvd~~~~lvGiit~ 270 (282)
T 2yzq_A 205 SHPTLL-FEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQL--PVIRGEGDLIGLIRD 270 (282)
T ss_dssp ---------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEE--EEEETTTEEEEEEEH
T ss_pred cchHHH-HhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCccee--EEECCCCCEEEEEeH
Confidence 000000 000000001125678888 89999999999999999999999987 999999999999997
|
| >2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.3e-15 Score=154.62 Aligned_cols=172 Identities=17% Similarity=0.129 Sum_probs=123.8
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccc
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVE 500 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~ 500 (704)
|+|+|+|++++.++.++++++++.+.|.++ +++.+||+|++ ++++|+++..|++... .+.+|+
T Consensus 1 m~v~~im~~~~~~v~~~~~~~~a~~~~~~~-~~~~~pV~d~~------------~~~~Giv~~~dl~~~~----~~~~v~ 63 (282)
T 2yzq_A 1 MRVKTIMTQNPVTITLPATRNYALELFKKY-KVRSFPVVNKE------------GKLVGIISVKRILVNP----DEEQLA 63 (282)
T ss_dssp CBHHHHSEESCCCEESSCC-------------CCEEEEECTT------------CCEEEEEESSCC--------------
T ss_pred CchHHhccCCCeEECCCCcHHHHHHHHHHc-CCCeEEEEcCC------------CcEEEEEEHHHHHhhh----ccCCHH
Confidence 579999999999999999999999999988 79999999866 7899999999997543 256899
Q ss_pred cccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh-hcCCCcccccccCchhhcCCCCCCCCC
Q psy6631 501 DFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE-RQRRPSRFEVTPAPDLLRGNPHGVSAS 578 (704)
Q Consensus 501 dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~-~~~~~sr~~v~~~~~~l~~~~~~~~~~ 578 (704)
++|.+++.++.+++++.|+++.|.+ .+...+||+|+ ++.+|.++..+... ...... ...
T Consensus 64 ~~m~~~~~~v~~~~~l~~a~~~m~~-~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~---------~~~--------- 124 (282)
T 2yzq_A 64 MLVKRDVPVVKENDTLKKAAKLMLE-YDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSE---------KYK--------- 124 (282)
T ss_dssp CCCBSCCCEEETTSBHHHHHHHHHH-HTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCS---------GGG---------
T ss_pred HHcCCCCcEECCCCcHHHHHHHHHH-cCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccC---------Ccc---------
Confidence 9999999999999999999999964 55667888876 56788888887654 332110 000
Q ss_pred CCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 579 SDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 579 ~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..++|. +++.+.+++++.++...|...+++++ ||+|++|+++|++++
T Consensus 125 -------~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l--~Vvd~~~~~~Giit~ 175 (282)
T 2yzq_A 125 -------GVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMAL--PVVDSEGNLVGIVDE 175 (282)
T ss_dssp -------GCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEE--EEECTTSCEEEEEEG
T ss_pred -------cCcHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEE--EEEcCCCeEEEEEEH
Confidence 013456676 78899999999999999998888876 999999999999997
|
| >4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.1e-15 Score=140.99 Aligned_cols=118 Identities=13% Similarity=0.122 Sum_probs=101.4
Q ss_pred ccccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc-----
Q psy6631 418 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS----- 492 (704)
Q Consensus 418 l~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~----- 492 (704)
+.+++|+|+|+++++++.+++|+.++.+.|.++ +++++||+|++ ++++|+|+..|++.....
T Consensus 15 l~~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~-~~~~~pVvd~~------------g~lvGiit~~Dll~~~~~~~~~~ 81 (170)
T 4esy_A 15 IRQVPIRDILTSPVVTVREDDTLDAVAKTMLEH-QIGCAPVVDQN------------GHLVGIITESDFLRGSIPFWIYE 81 (170)
T ss_dssp HHTSBGGGGCCSCCCCEETTSBHHHHHHHHHHT-TCSEEEEECTT------------SCEEEEEEGGGGGGGTCCTTHHH
T ss_pred HcCCCHHHhcCCCCcEECCcCcHHHHHHHHHHc-CCeEEEEEcCC------------ccEEEEEEHHHHHHHHhhccccc
Confidence 457889999999999999999999999999998 89999999987 899999999999754221
Q ss_pred -------------------cccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 493 -------------------GIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 493 -------------------~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
.....+|+++|++++.++++++++.+++++|. ..++..+||+|+++.+|.+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~-~~~~~~lpVvd~g~lvGivt~~Di 156 (170)
T 4esy_A 82 ASEILSRAIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMR-RHGIHRIPVVQDGVPVGIVTRRDL 156 (170)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHH-HTTCSEEEEEETTEEEEEEEHHHH
T ss_pred hhhhhhhccchhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHH-HcCCcEEEEEECCEEEEEEEHHHH
Confidence 12346899999999999999999999999995 577888999988777777777664
|
| >3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.7e-14 Score=163.86 Aligned_cols=194 Identities=13% Similarity=0.009 Sum_probs=129.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHhhhc-chhHHHHHHHHHHHHHH---hhhhhccccCCCC
Q psy6631 162 DPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRN-KKMNAFLQK-NRFLYPGIVVLLATSVS---FPLGLGKYMAGDL 236 (704)
Q Consensus 162 ~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~-~~~~~~l~~-~~~l~p~l~gllvg~l~---fP~~~G~~~~g~l 236 (704)
....+.+.+++|++.|+++.+|.+.+.+...+++.. ......... .+++.|++++++.+.+. .|..-|.+
T Consensus 7 ~~r~~~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsG----- 81 (632)
T 3org_A 7 LLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISRLAGRFAGYILYVVSGVALCLLSTFWCAVLSTEAEGSG----- 81 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGCBCS-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCC-----
Confidence 345677788999999999999999988776543211 000001111 12345666666666543 36655554
Q ss_pred CcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHH
Q psy6631 237 NTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMI 316 (704)
Q Consensus 237 ~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~ 316 (704)
..++...+++. . ..+. ....+ -.++.|++.+.+|.|+|.+.|-=-|+.-+||++|..+
T Consensus 82 --Ip~v~~~l~g~---------~-~~~~------~~~~~----~~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~ 139 (632)
T 3org_A 82 --LPQMKSILSGF---------Y-DKMR------SALEL----RVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQF 139 (632)
T ss_dssp --HHHHHHHTTTT---------H-HHHG------GGGSH----HHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHhCc---------c-cccc------ccccH----HHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHH
Confidence 45555444331 0 0000 00111 2357899999999999999999999999999999987
Q ss_pred HH--HHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHhCC-c--hhHHHHHHHHHHHHHHHhh
Q psy6631 317 GE--IIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMTGQ-I--THIIPVMIAVLISNAVAAL 390 (704)
Q Consensus 317 G~--~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElTG~-~--~~~lPimia~~is~~va~~ 390 (704)
+. .+...+.+ ..+--.+...|+||=+|++-+ |+..++..+|.... + ..++|.++++++|..+.+.
T Consensus 140 ~~~~~f~~~~~~---------~~~~r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~ 210 (632)
T 3org_A 140 YRLGVFKELCTD---------RALRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYEL 210 (632)
T ss_dssp TTSHHHHHHHHS---------HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhhccccCC---------HHHHHHHHHHHHHHHHHHHhCCccHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 77 55432211 112346788999998888888 89999999998764 2 4568999999999888775
Q ss_pred c
Q psy6631 391 L 391 (704)
Q Consensus 391 l 391 (704)
+
T Consensus 211 ~ 211 (632)
T 3org_A 211 L 211 (632)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-15 Score=155.51 Aligned_cols=180 Identities=11% Similarity=0.062 Sum_probs=144.3
Q ss_pred cccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc------
Q psy6631 419 YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS------ 492 (704)
Q Consensus 419 ~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~------ 492 (704)
...+|+|+|++++.++.+++++.+|++.|.++ +.+.+||+| + +++|+++..|++.....
T Consensus 18 ~~~~V~dim~~~~~~v~~~~~v~~a~~~m~~~-~~~~~~V~d-~-------------~l~GivT~~Di~~~~~~~~~~~~ 82 (296)
T 3ddj_A 18 QGMNIETLMIKNPPILSKEDRLGSAFKKINEG-GIGRIIVAN-E-------------KIEGLLTTRDLLSTVESYCKDSC 82 (296)
T ss_dssp CCSSGGGTCEESCCEECTTSBHHHHHHHTTGG-GCCEEEEES-S-------------SEEEEEEHHHHHGGGTTCC---C
T ss_pred cccCHHHhccCCCcEECCCccHHHHHHHHHHC-CCceEEEEC-C-------------eEEEEEeHHHHHHHhcccccccc
Confidence 36789999999999999999999999999998 899999998 5 69999999999755321
Q ss_pred ------cccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCc
Q psy6631 493 ------GIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAP 565 (704)
Q Consensus 493 ------~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~ 565 (704)
.....+|+++|++++.++.+++++.|+++.|.+ .+...+||+|+ ++.+|.++..+.........
T Consensus 83 ~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~-~~~~~lpVvd~~~~lvGivt~~dl~~~~~~~~-------- 153 (296)
T 3ddj_A 83 SQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVT-RNFGSLPVVDINDKPVGIVTEREFLLLYKDLD-------- 153 (296)
T ss_dssp CHHHHHHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHH-HTCSEEEEECTTSCEEEEEEHHHHGGGGGGSC--------
T ss_pred cchhhHHHhcccHHHhccCCCEEEcCCCCHHHHHHHHHH-cCCCEEEEEcCCCcEEEEEeHHHHHHhhhccc--------
Confidence 123578999999999999999999999999954 56778888865 56688888777544321000
Q ss_pred hhhcCCCCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH--HHHHH
Q psy6631 566 DLLRGNPHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR--IRMAF 642 (704)
Q Consensus 566 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr--~r~a~ 642 (704)
. ..+..++|. ++.++.|++++.++...|...+++.+ ||+|++|+++|++|+ +..++
T Consensus 154 -----------------~--~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~--~Vvd~~~~~~Givt~~dl~~~~ 212 (296)
T 3ddj_A 154 -----------------E--IFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRL--PVIDDDNKVVGIVTVVNAIKQL 212 (296)
T ss_dssp -----------------C--CCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEE--EEECTTSCEEEEEEHHHHHHHH
T ss_pred -----------------c--cccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEE--EEEcCCCEEEEEEEHHHHHHHH
Confidence 0 013455665 77888999999999999998888887 999999999999998 44444
Q ss_pred H
Q psy6631 643 E 643 (704)
Q Consensus 643 e 643 (704)
.
T Consensus 213 ~ 213 (296)
T 3ddj_A 213 A 213 (296)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-14 Score=149.40 Aligned_cols=173 Identities=12% Similarity=0.128 Sum_probs=137.0
Q ss_pred ccc-cccccceEEecCCCCHHHHHHHHHhcCCccEEEeecC-ccccccCCCCcCCeeEEEeecCCCCCCCCcc-------
Q psy6631 422 YVE-DFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SVAALLQPSLYDSIILIKKLPYLPDLLPSSS------- 492 (704)
Q Consensus 422 ~V~-diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~-~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~------- 492 (704)
+|. ++|+++++++.+++++.+|++.|.++ +.+.+||+|+ + ++++|+++.+|++.....
T Consensus 4 ~v~~~i~~~~~~~v~~~~sl~~a~~~m~~~-~~~~lpV~d~~~------------~~~~Givt~~di~~~~~~~~~~~~~ 70 (280)
T 3kh5_A 4 RVMKIAQNKKIVTVYPTTTIRKALMTMNEN-KYRRLPVVNAGN------------NKVVGIITSMDIVDFMGGGSKYNLI 70 (280)
T ss_dssp BGGGTSCCSCCCCBCTTSBHHHHHHHHHHH-CCCEEEEECTTT------------CBEEEEEEHHHHHHHTTTSGGGHHH
T ss_pred hHHHHhcCCCcEEECCCCcHHHHHHHHHhC-CCcEeeEEECCC------------CeEEEEEEHHHHHHHhcccchhhhh
Confidence 344 45778999999999999999999998 8999999986 4 789999999999743211
Q ss_pred ---------cccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccc
Q psy6631 493 ---------GIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVT 562 (704)
Q Consensus 493 ---------~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~ 562 (704)
...+.+|+++|++++.++.+++++.|+++.|. ..+...+||+|+ ++.+|.++..+........
T Consensus 71 ~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~-~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~------ 143 (280)
T 3kh5_A 71 REKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFL-TKNVGGAPIVNDENQLISLITERDVIRALLDK------ 143 (280)
T ss_dssp HTTSTTCHHHHTTSBGGGTSBCSCCCEETTCBHHHHHHHHH-HTTCSEEEEECTTCBEEEEEEHHHHHHHHGGG------
T ss_pred hhccccchhHHhhhhHHHhcCCCCEEECCCCCHHHHHHHHH-hCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhc------
Confidence 11246899999999999999999999999995 466778888875 5668888888765432100
Q ss_pred cCchhhcCCCCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 563 PAPDLLRGNPHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 563 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.. . ..+..++|. ++..+.|++++.++...|...+++.+ ||+ ++|+++|++|+
T Consensus 144 -----~~----~-----------~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~--~Vv-~~~~~~Givt~ 196 (280)
T 3kh5_A 144 -----ID----E-----------NEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRL--PVV-SEGRLVGIITS 196 (280)
T ss_dssp -----SC----T-----------TCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEE--EEE-ETTEEEEEEEH
T ss_pred -----CC----C-----------CCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEE--EEE-ECCEEEEEEEH
Confidence 00 0 013556675 78889999999999999998888887 999 78999999998
|
| >3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-14 Score=153.15 Aligned_cols=188 Identities=11% Similarity=0.048 Sum_probs=137.0
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc-----cccc
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS-----SGIY 495 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~-----~~~~ 495 (704)
+++.++|.++++++.+++++.++++.|.++ +.+.+||+|++. ..+..+++|+++.+|++.... ....
T Consensus 114 ~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~-~~~~lpVvd~~~-------~~~~~~l~Givt~~di~~~l~~~~~~~~~~ 185 (323)
T 3t4n_C 114 ERALGVDQLDTASIHPSRPLFEACLKMLES-RSGRIPLIDQDE-------ETHREIVVSVLTQYRILKFVALNCRETHFL 185 (323)
T ss_dssp HHHTTC----CCCBCTTSBHHHHHHHHHHH-TCSEEEEEEECT-------TTCCEEEEEEEEHHHHHHHHHHHCGGGGGC
T ss_pred HHHhCCCCCCceEeCCCCcHHHHHHHHHhC-CeeEEEEEecCC-------CCCccceEEEecHHHHHHHHHhcCCchhhh
Confidence 456777889999999999999999999998 899999998760 000114999999999974321 2334
Q ss_pred ccccccc---cccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCc-ccccccCchhhcC
Q psy6631 496 NVYVEDF---MVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPS-RFEVTPAPDLLRG 570 (704)
Q Consensus 496 ~~~V~dv---M~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~s-r~~v~~~~~~l~~ 570 (704)
..+|+++ |++++.++.+++++.|+.+.|. ..+...+||+|+ ++.+|.++..++........ ...-.+..+++..
T Consensus 186 ~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~-~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~~ 264 (323)
T 3t4n_C 186 KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLT-QGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR 264 (323)
T ss_dssp CSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHH-HHTCSEEEEECTTCBEEEEEETTHHHHHHHTTHHHHTTSBHHHHGGG
T ss_pred hCcHHHcCCCCCCCcEEECCCCcHHHHHHHHH-HcCCCEEEEECCCCeEEEEEeHHHHHHHHhhchhhhccCCHHHHHhh
Confidence 5689999 9999999999999999999995 466778899875 56788888888755432111 0001111122221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 571 NPHGVSASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.+ .-..+++++.|++++.++...|...+++++ ||||++|+++|+||+
T Consensus 265 ~~------------------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l--~Vvd~~~~l~Giit~ 311 (323)
T 3t4n_C 265 RS------------------DDFEGVYTCTKNDKLSTIMDNIRKARVHRF--FVVDDVGRLVGVLTL 311 (323)
T ss_dssp SC------------------TTCCCCEEECTTCBHHHHHHHHHHSCCCEE--EEECTTSBEEEEEEH
T ss_pred cc------------------ccCCCCEEECCCCCHHHHHHHHHHhCCCEE--EEECCCCcEEEEEEH
Confidence 00 001257899999999999999999999887 999999999999998
|
| >2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* | Back alignment and structure |
|---|
Probab=99.39 E-value=5.1e-14 Score=149.59 Aligned_cols=180 Identities=11% Similarity=0.072 Sum_probs=134.3
Q ss_pred cccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecC-ccccccCCCCcCCeeEEEeecCCCCCCCCc--------cc
Q psy6631 423 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SVAALLQPSLYDSIILIKKLPYLPDLLPSS--------SG 493 (704)
Q Consensus 423 V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~-~~~~~~~p~~~~~~~LvG~Is~~dll~~~~--------~~ 493 (704)
++++|.+++.++.+++++.++++.|.++ +.+.+||+|+ + ++++|+|+..|++.... ..
T Consensus 120 ~~~im~~~~~~v~~~~~~~~a~~~~~~~-~~~~~~Vvd~~~------------~~~~Givt~~dl~~~~~~~~~~~~~~~ 186 (330)
T 2v8q_E 120 YLQDSFKPLVCISPNASLFDAVSSLIRN-KIHRLPVIDPES------------GNTLYILTHKRILKFLKLFITEFPKPE 186 (330)
T ss_dssp HSSSSCCCCCCBCTTSBHHHHHHHHHHH-TCSCEEEECTTT------------CCEEEEECHHHHHHHHHHHSCSSSCCG
T ss_pred HhhcccCCceEeCCCCCHHHHHHHHHHC-CCCeEEEEeCCC------------CcEEEEEcHHHHHHHHHHHhhccCchh
Confidence 5688999999999999999999999998 7899999987 5 78999999999874321 11
Q ss_pred ccccccccc--cc-cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccc-cccCchhh
Q psy6631 494 IYNVYVEDF--MV-RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFE-VTPAPDLL 568 (704)
Q Consensus 494 ~~~~~V~dv--M~-~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~-v~~~~~~l 568 (704)
....+++++ |+ +++.++.+++++.|+.+.|.+ .+...+||+|+ ++.+|.++..++........... -.+..+.+
T Consensus 187 ~~~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~-~~~~~~~Vvd~~~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~ 265 (330)
T 2v8q_E 187 FMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQ-HRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKAL 265 (330)
T ss_dssp GGGSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHH-HCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHG
T ss_pred hhcCCHHHhcccCcCCceEECCCCCHHHHHHHHHH-cCCCeEEEECCCCcEEEEEEHHHHHHHHhccccccccCcHHHHH
Confidence 123456665 65 789999999999999999954 56778899874 56678777776543321110000 00000111
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 569 RGNPHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+. ...|+ ++.++.|++++.++...|...+++++ ||||++|+++|+||+
T Consensus 266 ~~-------------------~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l--~Vvd~~g~l~Giit~ 314 (330)
T 2v8q_E 266 QH-------------------RSHYFEGVLKCYLHETLEAIINRLVEAEVHRL--VVVDEHDVVKGIVSL 314 (330)
T ss_dssp GG-------------------CCSCCCSCCEECTTSBHHHHHHHHHHHTCSEE--EEECTTSBEEEEEEH
T ss_pred hc-------------------cccccCCCeEECCCCcHHHHHHHHHHCCCcEE--EEEcCCCcEEEEEeH
Confidence 10 11234 78899999999999999999999887 999999999999998
|
| >3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-12 Score=117.47 Aligned_cols=117 Identities=11% Similarity=0.089 Sum_probs=98.8
Q ss_pred ccccccccccc--eEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccc
Q psy6631 420 NVYVEDFMVRD--VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNV 497 (704)
Q Consensus 420 ~~~V~diM~~~--v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~ 497 (704)
+++|+|+|+++ +.++.++++++++.+.|.++ +++.+||+|++ .++++|+|+.+|++..........
T Consensus 2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~-~~~~~pVvd~~-----------~~~~vGivt~~dl~~~~~~~~~~~ 69 (127)
T 3nqr_A 2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIES-AHSRFPVISED-----------KDHIEGILMAKDLLPFMRSDAEAF 69 (127)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHH-CCSEEEEESSS-----------TTCEEEEEEGGGGGGGGSTTCCCC
T ss_pred CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhC-CCCEEEEEcCC-----------CCcEEEEEEHHHHHHHHhccCCCC
Confidence 46899999954 99999999999999999998 89999999864 158999999999987654445678
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
+++++|++ +.++++++++.++++.|. ..+.+.+||+|+ ++.+|.++..++.
T Consensus 70 ~v~~~m~~-~~~v~~~~~l~~a~~~m~-~~~~~~lpVvd~~g~~~Giit~~dll 121 (127)
T 3nqr_A 70 SMDKVLRT-AVVVPESKRVDRMLKEFR-SQRYHMAIVIDEFGGVSGLVTIEDIL 121 (127)
T ss_dssp CHHHHCBC-CCEEETTCBHHHHHHHHH-HTTCCEEEEECTTSCEEEEEEHHHHH
T ss_pred CHHHHcCC-CeEECCCCcHHHHHHHHH-hcCCeEEEEEeCCCCEEEEEEHHHHH
Confidence 89999965 789999999999999995 577888999975 6778888887754
|
| >3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-12 Score=121.45 Aligned_cols=117 Identities=9% Similarity=0.105 Sum_probs=99.2
Q ss_pred cccccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccc
Q psy6631 418 IYNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIY 495 (704)
Q Consensus 418 l~~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~ 495 (704)
+..++|+|+|++ ++.+++++++++++++.|.++ +++.+||+|++ +++++|+|+.+|++...... .
T Consensus 35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~-~~~~~pVvd~~-----------~~~lvGivt~~dl~~~~~~~-~ 101 (156)
T 3oi8_A 35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDT-AHSRFPVIGED-----------KDEVLGILHAKDLLKYMFNP-E 101 (156)
T ss_dssp HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHH-CCSEEEEESSS-----------TTCEEEEEEGGGGGGGSSCG-G
T ss_pred cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHC-CCCEEEEEcCC-----------CCcEEEEEEHHHHHHHHHcC-C
Confidence 346789999997 799999999999999999998 89999999875 13899999999998764433 5
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
..+|+++|++ +.++++++++.++++.|. ..+.+.+||+|+ ++.+|.++..++
T Consensus 102 ~~~v~~im~~-~~~v~~~~~l~~a~~~m~-~~~~~~~~Vvd~~g~~~Givt~~Di 154 (156)
T 3oi8_A 102 QFHLKSILRP-AVFVPEGKSLTALLKEFR-EQRNHMAIVIDEYGGTSGLVTFEDI 154 (156)
T ss_dssp GCCHHHHCBC-CCEEETTSBHHHHHHHHH-HTTCCEEEEECTTSSEEEEEEHHHH
T ss_pred cccHHHHcCC-CEEECCCCCHHHHHHHHH-hcCCeEEEEECCCCCEEEEEEHHHh
Confidence 7789999976 899999999999999995 577889999975 567888777764
|
| >3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-12 Score=119.41 Aligned_cols=117 Identities=11% Similarity=-0.027 Sum_probs=101.1
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccc-cc
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYN-VY 498 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~-~~ 498 (704)
+++|+|+|.+++.++.++++++++.+.|.++ +.+.+||+|++ +++|+|+.+|++......... .+
T Consensus 4 s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~-~~~~~~Vvd~~-------------~~~Givt~~dl~~~~~~~~~~~~~ 69 (128)
T 3gby_A 4 SVTFSYLAETDYPVFTLGGSTADAARRLAAS-GCACAPVLDGE-------------RYLGMVHLSRLLEGRKGWPTVKEK 69 (128)
T ss_dssp TCBGGGGCBCCSCCEETTSBHHHHHHHHHHH-TCSEEEEEETT-------------EEEEEEEHHHHHTTCSSSCCTTCB
T ss_pred ceEHHHhhcCCcceECCCCCHHHHHHHHHHC-CCcEEEEEECC-------------EEEEEEEHHHHHHHHhhCCcccCc
Confidence 5889999999999999999999999999998 89999999854 899999999998765544333 78
Q ss_pred cccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh
Q psy6631 499 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE 551 (704)
Q Consensus 499 V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~ 551 (704)
++++|++++.++++++++.|+++.|. ..+.+.+||+|+ ++.+|.++..++..
T Consensus 70 v~~~m~~~~~~v~~~~~l~~~~~~~~-~~~~~~lpVvd~~g~~~Giit~~dll~ 122 (128)
T 3gby_A 70 LGEELLETVRSYRPGEQLFDNLISVA-AAKCSVVPLADEDGRYEGVVSRKRILG 122 (128)
T ss_dssp CCGGGCBCCCCBCTTSBGGGSHHHHH-HCSSSEEEEECTTCBEEEEEEHHHHHH
T ss_pred HHHHccCCCcEECCCCCHHHHHHHHH-hCCCcEEEEECCCCCEEEEEEHHHHHH
Confidence 99999999999999999999999995 467788999974 66788888887644
|
| >3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.7e-12 Score=116.16 Aligned_cols=116 Identities=14% Similarity=0.062 Sum_probs=98.7
Q ss_pred ccccccccc--cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccc
Q psy6631 420 NVYVEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNV 497 (704)
Q Consensus 420 ~~~V~diM~--~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~ 497 (704)
.++|+|+|+ +++.++.++++++++.+.|.++ +++.+||+|++ .++++|+|+.+|++.... ....
T Consensus 4 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~-~~~~~pVvd~~-----------~~~~~Givt~~dl~~~~~--~~~~ 69 (129)
T 3jtf_A 4 ERTVADIMVPRSRMDLLDISQPLPQLLATIIET-AHSRFPVYEDD-----------RDNIIGILLAKDLLRYML--EPAL 69 (129)
T ss_dssp CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHS-CCSEEEEESSS-----------TTCEEEEEEGGGGGGGGT--CTTS
T ss_pred CCCHHHhCccHHHeEEECCCCCHHHHHHHHHHc-CCCEEEEEcCC-----------CCcEEEEEEHHHHHhHhc--cCCc
Confidence 578999999 7789999999999999999998 89999999863 158999999999986543 2356
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE 551 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~ 551 (704)
+++++|++ +.++.+++++.++++.|. ..+.+.+||+|+ ++.+|.++..++..
T Consensus 70 ~v~~~m~~-~~~v~~~~~l~~~~~~m~-~~~~~~~pVvd~~g~~~Giit~~Dil~ 122 (129)
T 3jtf_A 70 DIRSLVRP-AVFIPEVKRLNVLLREFR-ASRNHLAIVIDEHGGISGLVTMEDVLE 122 (129)
T ss_dssp CGGGGCBC-CCEEETTCBHHHHHHHHH-TSSCCEEEEECC-CCEEEEEEHHHHHH
T ss_pred CHHHHhCC-CeEeCCCCcHHHHHHHHH-hcCCeEEEEEeCCCCEEEEEEHHHHHH
Confidence 79999965 889999999999999995 577889999986 67788888887643
|
| >2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-13 Score=144.92 Aligned_cols=185 Identities=13% Similarity=0.079 Sum_probs=134.5
Q ss_pred ccccccce--EEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc-----ccccc
Q psy6631 424 EDFMVRDV--KYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS-----SGIYN 496 (704)
Q Consensus 424 ~diM~~~v--~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~-----~~~~~ 496 (704)
+++|.+++ .++.+++++.++++.|.++ +.+.+||+|++.. .+...++|+|+..|++.... .....
T Consensus 110 ~~im~~~~~~~~v~~~~~~~~a~~~~~~~-~~~~~~Vvd~~~~-------~~~~~~~Givt~~dl~~~~~~~~~~~~~~~ 181 (334)
T 2qrd_G 110 RKIGAIPPETIYVHPMHSLMDACLAMSKS-RARRIPLIDVDGE-------TGSEMIVSVLTQYRILKFISMNCKETAMLR 181 (334)
T ss_dssp HHHTCSCSSCCCBCTTSBHHHHHHHHHHS-CCSEEEEEEEETT-------TTEEEEEEEEEHHHHHHHHHHHCGGGGGCC
T ss_pred HhhccCCCceeeeCCCCcHHHHHHHHHHC-CceEEEEEeCCCC-------cCccceEEEeeHHHHHHHHHhhccchhhhh
Confidence 35677766 8999999999999999998 7899999986500 01123999999999874321 11234
Q ss_pred ccccc---ccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCc-ccccccCchhhcCC
Q psy6631 497 VYVED---FMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPS-RFEVTPAPDLLRGN 571 (704)
Q Consensus 497 ~~V~d---vM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~s-r~~v~~~~~~l~~~ 571 (704)
.+|++ +|++++.++++++++.|+.+.|.+ .+...+||+|+ ++.+|.++..++........ +..-.+..+++...
T Consensus 182 ~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~-~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~~~ 260 (334)
T 2qrd_G 182 VPLNQMTIGTWSNLATASMETKVYDVIKMLAE-KNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKR 260 (334)
T ss_dssp CBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHH-HTCSEEEEECTTCBEEEEEETHHHHHHHTTSCGGGGGSBHHHHHTTC
T ss_pred CcHHHhCCcccCCceEECCCCcHHHHHHHHHH-cCCcEEEEEcCCCcEEEEEEHHHHHHHhhccccccccCcHHHHHhcc
Confidence 67888 599999999999999999999954 55677888885 57789999888765432211 00001111121110
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 572 PHGVSASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+ ..++.++.|++++.++...|...+++++ ||||++|+++|+||+
T Consensus 261 -----------------~~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~l--~Vvd~~g~l~Giit~ 306 (334)
T 2qrd_G 261 -----------------PAN-FDGVHTCRATDRLDGIFDAIKHSRVHRL--FVVDENLKLEGILSL 306 (334)
T ss_dssp -----------------CTT-CCCCCEECTTCBHHHHHHHHHHSCCCEE--EEECTTCBEEEEEEH
T ss_pred -----------------ccc-CCCCEEECCCCcHHHHHHHHHHcCCCEE--EEECCCCeEEEEEeH
Confidence 000 0367889999999999999999988887 999999999999998
|
| >2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.1e-13 Score=144.88 Aligned_cols=185 Identities=14% Similarity=0.105 Sum_probs=136.4
Q ss_pred cccccccccc--ccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc---
Q psy6631 418 IYNVYVEDFM--VRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS--- 492 (704)
Q Consensus 418 l~~~~V~diM--~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~--- 492 (704)
+...+|+|+| ++++.++++++++.++++.|.++ +++.+||+|++ .++++|+++.+|++.....
T Consensus 32 l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~-~~~~~pV~d~~-----------~~~~vGivt~~Dll~~l~~~~~ 99 (330)
T 2v8q_E 32 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTN-GVRAAPLWDSK-----------KQSFVGMLTITDFINILHRYYK 99 (330)
T ss_dssp HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHH-TCSEEEEEETT-----------TTEEEEEEEHHHHHHHHHHHHH
T ss_pred HHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHc-CCcEEEEEeCC-----------CCeEEEEEEHHHHHHHHHHHHh
Confidence 4567899999 88999999999999999999998 89999999865 1589999999998632100
Q ss_pred -------c-------ccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeeccc--CCCceEEeehHHHhhhcC-C
Q psy6631 493 -------G-------IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE--SSGKFEQMEIKRREERQR-R 555 (704)
Q Consensus 493 -------~-------~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~--~~~~~~~i~~~~~~~~~~-~ 555 (704)
. ....+++++|++++.++.+++++.|+++.|.+ .+...+||+| +++.+|.++..++..... .
T Consensus 100 ~~~~~~~~l~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~-~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~ 178 (330)
T 2v8q_E 100 SALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIR-NKIHRLPVIDPESGNTLYILTHKRILKFLKLF 178 (330)
T ss_dssp HHTTTCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHH-HTCSCEEEECTTTCCEEEEECHHHHHHHHHHH
T ss_pred ccccchhHHhhccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHH-CCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHH
Confidence 0 01123467899999999999999999999954 5566688887 466788888887654321 0
Q ss_pred CcccccccCchhhcCCCCCCCCCCCCCCCCCCCCCC--cc--cCccccCCCchhhhcccccccccCCCCcCcccCCCCCc
Q psy6631 556 PSRFEVTPAPDLLRGNPHGVSASSDNIPRTENLDGP--QF--CPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTV 631 (704)
Q Consensus 556 ~sr~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~--~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l 631 (704)
.... +..+.... ...+ +| .++..+.|++++.++...|...+++++ ||+|++|++
T Consensus 179 ~~~~---~~~~~~~~-----------------~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~--~Vvd~~~~l 236 (330)
T 2v8q_E 179 ITEF---PKPEFMSK-----------------SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSAL--PVVDEKGRV 236 (330)
T ss_dssp SCSS---SCCGGGGS-----------------BHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEE--EEECTTSBE
T ss_pred hhcc---CchhhhcC-----------------CHHHhcccCcCCceEECCCCCHHHHHHHHHHcCCCeE--EEECCCCcE
Confidence 0000 00001100 0111 12 467788999999999999988888877 999999999
Q ss_pred chHHHH
Q psy6631 632 TGAESR 637 (704)
Q Consensus 632 ~G~vtr 637 (704)
+|++++
T Consensus 237 ~Giit~ 242 (330)
T 2v8q_E 237 VDIYSK 242 (330)
T ss_dssp EEEEEG
T ss_pred EEEEEH
Confidence 999998
|
| >3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-12 Score=122.80 Aligned_cols=115 Identities=14% Similarity=0.126 Sum_probs=99.3
Q ss_pred ccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc--ccccc
Q psy6631 421 VYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS--SGIYN 496 (704)
Q Consensus 421 ~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~--~~~~~ 496 (704)
++|+|+|++ ++.++.+++++.++++.|.++ +.+.+||+|++ ++++|+|+..|++.... .....
T Consensus 28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~-~~~~~~Vvd~~------------~~~~Givt~~dl~~~~~~~~~~~~ 94 (149)
T 3k2v_A 28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRK-NLGMTAICDDD------------MNIIGIFTDGDLRRVFDTGVDMRD 94 (149)
T ss_dssp SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHH-TSSEEEEECTT------------CBEEEEEEHHHHHHHHCSSSCCTT
T ss_pred cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhC-CCcEEEEECCC------------CcEEEEecHHHHHHHHhcCCCccc
Confidence 689999999 999999999999999999998 89999999977 79999999999975422 23357
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
.+|+++|++++.++++++++.++++.|. ..+...+||+|+++.+|.++..++
T Consensus 95 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~-~~~~~~lpVvd~~~~~Giit~~di 146 (149)
T 3k2v_A 95 ASIADVMTRGGIRIRPGTLAVDALNLMQ-SRHITCVLVADGDHLLGVVHMHDL 146 (149)
T ss_dssp CBHHHHSEESCCEECTTCBHHHHHHHHH-HHTCSEEEEEETTEEEEEEEHHHH
T ss_pred CcHHHHcCCCCeEECCCCCHHHHHHHHH-HcCCCEEEEecCCEEEEEEEHHHh
Confidence 8999999999999999999999999995 466778999987766777776664
|
| >3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.6e-12 Score=117.38 Aligned_cols=117 Identities=13% Similarity=0.082 Sum_probs=98.5
Q ss_pred ccccccccc--cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc-ccccc
Q psy6631 420 NVYVEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS-SGIYN 496 (704)
Q Consensus 420 ~~~V~diM~--~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~-~~~~~ 496 (704)
+++|+|+|+ +++.++.++++++++++.|.++ +++.+||+|++ .++++|+|+.+|++.... .....
T Consensus 2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~-~~~~~pVvd~~-----------~~~~vGivt~~dl~~~~~~~~~~~ 69 (136)
T 3lfr_A 2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDA-AHSRYPVIGES-----------HDDVLGVLLAKDLLPLILKADGDS 69 (136)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHH-CCSEEEEESSS-----------TTCEEEEEEGGGGGGGGGSSSGGG
T ss_pred CCChHhccccHHHEEEEcCCCCHHHHHHHHHhC-CCCEEEEEcCC-----------CCcEEEEEEHHHHHHHHHhccCCC
Confidence 468999999 6789999999999999999998 89999999864 148999999999986543 34457
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
.+|+++|++ +.++.+++++.++++.|. ..+.+.+||+|+ ++.+|.++..++.
T Consensus 70 ~~v~~~m~~-~~~v~~~~~l~~~~~~m~-~~~~~~~~Vvd~~g~lvGiit~~Dil 122 (136)
T 3lfr_A 70 DDVKKLLRP-ATFVPESKRLNVLLREFR-ANHNHMAIVIDEYGGVAGLVTIEDVL 122 (136)
T ss_dssp CCGGGTCBC-CCEEETTCBHHHHHHHHH-HHTCCEEEEECTTSCEEEEEEHHHHH
T ss_pred cCHHHHcCC-CeEECCCCcHHHHHHHHH-hcCCeEEEEEeCCCCEEEEEEHHHHH
Confidence 789999976 899999999999999995 466788999875 5678888777754
|
| >4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.8e-12 Score=119.69 Aligned_cols=119 Identities=20% Similarity=0.229 Sum_probs=99.8
Q ss_pred cccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc------
Q psy6631 420 NVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS------ 491 (704)
Q Consensus 420 ~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~------ 491 (704)
.++|+|+|++ ++.++.+++++.++.+.|.++ +++.+||+|++ ++++|+|+..|++....
T Consensus 4 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~-~~~~~~Vvd~~------------~~~~G~vt~~dl~~~~~~~~~~~ 70 (152)
T 4gqw_A 4 VYTVGEFMTKKEDLHVVKPTTTVDEALELLVEN-RITGFPVIDED------------WKLVGLVSDYDLLALDSGDSTWK 70 (152)
T ss_dssp CSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHT-TCSEEEEECTT------------CBEEEEEEHHHHTTCC----CCH
T ss_pred eEEhhhccCCCCCCeEECCCCcHHHHHHHHHHc-CCceEEEEeCC------------CeEEEEEEHHHHHHhhcccCccc
Confidence 5789999998 899999999999999999998 89999999977 79999999999975422
Q ss_pred ---------ccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhh
Q psy6631 492 ---------SGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREER 552 (704)
Q Consensus 492 ---------~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~ 552 (704)
......+|.++|++++.++.+++++.++++.|. ..+...+||+++ ++.+|.++..++...
T Consensus 71 ~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~-~~~~~~l~Vvd~~g~~~Giit~~dil~~ 140 (152)
T 4gqw_A 71 TFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILL-ETKYRRLPVVDSDGKLVGIITRGNVVRA 140 (152)
T ss_dssp HHHHHHTC-----CCBHHHHSEESCCCEESSSBHHHHHHHHH-HSSCCEEEEECTTSBEEEEEEHHHHHHH
T ss_pred chHHHHHHHHHhccccHHHhcCCCceEECCCCcHHHHHHHHH-HCCCCEEEEECCCCcEEEEEEHHHHHHH
Confidence 123457899999999999999999999999995 466778899984 677888888876543
|
| >2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-12 Score=134.94 Aligned_cols=128 Identities=23% Similarity=0.228 Sum_probs=103.0
Q ss_pred CCCCccccccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCC-
Q psy6631 412 LPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPS- 490 (704)
Q Consensus 412 ~~~~~~l~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~- 490 (704)
+++....++++|+|+|+++++++.+++++.++.++|.++ ++++|||||++ ++++++|+|++.|++...
T Consensus 4 ~~~~~~~~~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~-~~~~~PVVd~~----------~~~~LvGiIt~~dl~~~l~ 72 (250)
T 2d4z_A 4 SWSSANKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQT-KLKFFPFVDTP----------DTNTLLGSIDRTEVEGLLQ 72 (250)
T ss_dssp CCCCCCCSSCBTTSSSBSSCCCEETTCBHHHHHHHHHHC-CCSEEEEESCT----------TTCBEEEEEEHHHHHHHHH
T ss_pred CCCCcccCCCChHHhcCCCCeEECCCCCHHHHHHHHHhc-CCCEEEEEecC----------CCCeEEEEEEHHHHHHHHH
Confidence 344456778999999999999999999999999999998 89999999875 336899999999986210
Q ss_pred -------c---c--------------------------------------------------------------------
Q psy6631 491 -------S---S-------------------------------------------------------------------- 492 (704)
Q Consensus 491 -------~---~-------------------------------------------------------------------- 492 (704)
. .
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 152 (250)
T 2d4z_A 73 RRISAYRRQPAAAAEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGI 152 (250)
T ss_dssp HHHHTTSSSCCCCCCBCCC-------------------------------------------------------------
T ss_pred HhhhhhhhhhhhhhcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccc
Confidence 0 0
Q ss_pred -----------------------------ccccccc--c-cccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCc
Q psy6631 493 -----------------------------GIYNVYV--E-DFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGK 540 (704)
Q Consensus 493 -----------------------------~~~~~~V--~-dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~ 540 (704)
.....+| + .+|++.+.+|.+++++.++.++|. ..++..+||++.++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~-~lglr~l~V~~~GrL 231 (250)
T 2d4z_A 153 YQKKQKGTGQVASRFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFS-LLGLDRAYVTSMGKL 231 (250)
T ss_dssp --------------CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHH-HHTCSEEEEEETTEE
T ss_pred cccccccccccCcccccccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHH-HhCCeEEEEEECCEE
Confidence 0011233 2 479999999999999999999994 577788889988888
Q ss_pred eEEeehHHHhh
Q psy6631 541 FEQMEIKRREE 551 (704)
Q Consensus 541 ~~~i~~~~~~~ 551 (704)
+|.++++++.+
T Consensus 232 VGIVTrkDl~k 242 (250)
T 2d4z_A 232 VGVVALAEIQA 242 (250)
T ss_dssp EEEEEHHHHHH
T ss_pred EEEEEHHHHHH
Confidence 99998888754
|
| >3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-12 Score=118.08 Aligned_cols=116 Identities=11% Similarity=0.159 Sum_probs=98.8
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccc
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVE 500 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~ 500 (704)
++|+|+|++++.++.++++++++.+.|.++ +.+.+||+|++ ++++|+|+..|++...... ..+++
T Consensus 1 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~-~~~~~~Vvd~~------------~~~~G~vt~~dl~~~~~~~--~~~v~ 65 (122)
T 3kpb_A 1 TLVKDILSKPPITAHSNISIMEAAKILIKH-NINHLPIVDEH------------GKLVGIITSWDIAKALAQN--KKTIE 65 (122)
T ss_dssp CBHHHHCCSCCCCEETTSBHHHHHHHHHHH-TCSCEEEECTT------------SBEEEEECHHHHHHHHHTT--CCBGG
T ss_pred CchHHhhCCCCEEeCCCCcHHHHHHHHHHc-CCCeEEEECCC------------CCEEEEEEHHHHHHHHHhc--ccCHH
Confidence 369999999999999999999999999998 78999999977 7999999999997542222 23899
Q ss_pred cccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhh
Q psy6631 501 DFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREER 552 (704)
Q Consensus 501 dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~ 552 (704)
++|.+++.++.+++++.++++.|. ..+...+||+|+ ++.+|.++..++...
T Consensus 66 ~~~~~~~~~v~~~~~l~~~~~~~~-~~~~~~l~Vvd~~g~~~Givt~~dl~~~ 117 (122)
T 3kpb_A 66 EIMTRNVITAHEDEPVDHVAIKMS-KYNISGVPVVDDYRRVVGIVTSEDISRL 117 (122)
T ss_dssp GTSBSSCCCEETTSBHHHHHHHHH-HHTCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred HHhcCCCeEECCCCCHHHHHHHHH-HhCCCeEEEECCCCCEEEEEeHHHHHHH
Confidence 999999999999999999999995 456778899887 677888888876543
|
| >3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-12 Score=121.58 Aligned_cols=120 Identities=17% Similarity=0.253 Sum_probs=101.1
Q ss_pred ccccccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccc
Q psy6631 417 GIYNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGI 494 (704)
Q Consensus 417 ~l~~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~ 494 (704)
.+..++|+|+|++ ++.++.++++++++++.|.++ +++.+||+|++ .++++|+|+.+|++.......
T Consensus 19 ~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~-~~~~~pVvd~~-----------~~~lvGivt~~dl~~~~~~~~ 86 (148)
T 3lv9_A 19 EFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEE-GVTRYPVCRKN-----------KDDILGFVHIRDLYNQKINEN 86 (148)
T ss_dssp GGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHS-CCSEEEEESSS-----------TTSEEEEEEHHHHHHHHHHHS
T ss_pred ccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHC-CCCEEEEEcCC-----------CCcEEEEEEHHHHHHHHhcCC
Confidence 3567899999998 999999999999999999998 89999999864 148999999999975432222
Q ss_pred cccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh
Q psy6631 495 YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE 551 (704)
Q Consensus 495 ~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~ 551 (704)
..+|+++| +++.++++++++.++++.|. ..+.+.+||+|+ ++.+|.++..++..
T Consensus 87 -~~~v~~~m-~~~~~v~~~~~l~~~~~~m~-~~~~~~l~Vvd~~g~~~Giit~~dil~ 141 (148)
T 3lv9_A 87 -KIELEEIL-RDIIYISENLTIDKALERIR-KEKLQLAIVVDEYGGTSGVVTIEDILE 141 (148)
T ss_dssp -CCCGGGTC-BCCEEEETTSBHHHHHHHHH-HHTCSEEEEECTTSSEEEEEEHHHHHH
T ss_pred -CccHHHhc-CCCeEECCCCCHHHHHHHHH-hcCCeEEEEEeCCCCEEEEEEHHHHHH
Confidence 67899999 88999999999999999995 467788999986 67788888887643
|
| >2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-12 Score=117.73 Aligned_cols=120 Identities=12% Similarity=0.115 Sum_probs=101.5
Q ss_pred ccccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCC-CCCC-ccccc
Q psy6631 418 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPD-LLPS-SSGIY 495 (704)
Q Consensus 418 l~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dl-l~~~-~~~~~ 495 (704)
+.+++|+|+|++++.++.++++++++.+.|.++ +.+.+||+|++ ++++|+|+..|+ .... .....
T Consensus 5 l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~-~~~~~~Vvd~~------------~~~~Givt~~dl~~~~~~~~~~~ 71 (138)
T 2p9m_A 5 LKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKY-KISSLPVIDDE------------NKVIGIVTTTDIGYNLIRDKYTL 71 (138)
T ss_dssp CTTCBGGGTSBCSCCCEETTSBHHHHHHHHHHH-TCCEEEEECTT------------CBEEEEEEHHHHHHHHTTTCCCS
T ss_pred cccCCHHHhhcCCceEECCCCcHHHHHHHHHHC-CCcEEEEECCC------------CeEEEEEEHHHHHHHHHhhcccC
Confidence 457899999999999999999999999999988 78999999877 789999999998 6432 23345
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCC-----Cceeeccc-CCCceEEeehHHHhh
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRS-----LRVFPLVE-SSGKFEQMEIKRREE 551 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~r-----l~Vvpvv~-~~~~~~~i~~~~~~~ 551 (704)
..+++++|.+++.++++++++.|+++.|. ..+ ...+||+| +++.+|.++..++..
T Consensus 72 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~-~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~ 132 (138)
T 2p9m_A 72 ETTIGDVMTKDVITIHEDASILEAIKKMD-ISGKKEEIINQLPVVDKNNKLVGIISDGDIIR 132 (138)
T ss_dssp SCBHHHHSCSSCCCEETTSBHHHHHHHHT-CC-----CCCEEEEECTTSBEEEEEEHHHHHH
T ss_pred CcCHHHHhCCCcEEECCCCCHHHHHHHHH-hcCCccccccEEEEECCCCeEEEEEEHHHHHH
Confidence 67899999999999999999999999994 456 77899998 566788888877643
|
| >2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=5.5e-12 Score=116.36 Aligned_cols=119 Identities=11% Similarity=0.114 Sum_probs=99.7
Q ss_pred ccccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC-CC-Cccccc
Q psy6631 418 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL-LP-SSSGIY 495 (704)
Q Consensus 418 l~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll-~~-~~~~~~ 495 (704)
+..++|+|+|++++.+++++++++++.+.|.++ +.+.+||+|++ ++++|+|+..|++ .. ......
T Consensus 4 l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~-~~~~~~Vvd~~------------~~~~Givt~~dl~~~~~~~~~~~ 70 (138)
T 2yzi_A 4 DMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEF-DVGSLVVINDD------------GNVVGFFTKSDIIRRVIVPGLPY 70 (138)
T ss_dssp CTTSBGGGTCBCCCCEECTTSBHHHHHHHHHHH-TCSEEEEECTT------------SCEEEEEEHHHHHHHTTTTCCCT
T ss_pred hhhhhHHHHhcCCCeEECCCCcHHHHHHHHHHc-CCCEEEEEcCC------------CcEEEEEeHHHHHHHHHhcCCcc
Confidence 346889999999999999999999999999998 79999999876 7899999999995 22 222345
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeeccc-CCCceEEeehHHHhh
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE-SSGKFEQMEIKRREE 551 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~-~~~~~~~i~~~~~~~ 551 (704)
..+|.++|++++.++++++++.++++.|.+ .+.+.+ |++ +++.+|.++..++..
T Consensus 71 ~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~-~~~~~l-Vvd~~g~~~Giit~~dil~ 125 (138)
T 2yzi_A 71 DIPVERIMTRNLITANVNTPLGEVLRKMAE-HRIKHI-LIEEEGKIVGIFTLSDLLE 125 (138)
T ss_dssp TSBGGGTCBCSCCEEETTSBHHHHHHHHHH-HTCSEE-EEEETTEEEEEEEHHHHHH
T ss_pred cCCHHHHhhCCCeEECCCCcHHHHHHHHHh-cCCCEE-EECCCCCEEEEEEHHHHHH
Confidence 678999999999999999999999999964 456666 776 566788888877654
|
| >3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-12 Score=124.30 Aligned_cols=124 Identities=13% Similarity=0.132 Sum_probs=105.2
Q ss_pred cccccccccccccc---ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc
Q psy6631 416 SGIYNVYVEDFMVR---DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS 492 (704)
Q Consensus 416 ~~l~~~~V~diM~~---~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~ 492 (704)
..+..++|+|+|++ ++.++.++++++++++.|.++ +.+.+||+|++ ++++|+|+..|++.....
T Consensus 19 ~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~-~~~~~~Vvd~~------------~~~~Givt~~dl~~~~~~ 85 (165)
T 3fhm_A 19 FQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAH-KIGAVVVTDAD------------GVVLGIFTERDLVKAVAG 85 (165)
T ss_dssp CSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHH-TCSEEEEECTT------------SCEEEEEEHHHHHHHHHH
T ss_pred HhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHc-CCCEEEEEcCC------------CeEEEEEEHHHHHHHHHh
Confidence 45678999999995 799999999999999999998 89999999977 799999999999754221
Q ss_pred ---cccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhc
Q psy6631 493 ---GIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQ 553 (704)
Q Consensus 493 ---~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~ 553 (704)
.....+|+++|.+++.++++++++.|+++.|.+ .+...+||+|+++.+|.++..++....
T Consensus 86 ~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~-~~~~~lpVvd~g~~~Giit~~dil~~~ 148 (165)
T 3fhm_A 86 QGAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTG-GRFRHVPVEENGRLAGIISIGDVVKAR 148 (165)
T ss_dssp HGGGGGTSBGGGTSBSSCCCBCTTCBHHHHHHHHHH-HTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred cCCccccCCHHHHhcCCCeEECCCCcHHHHHHHHHH-cCCCEEEEEECCEEEEEEEHHHHHHHH
Confidence 345689999999999999999999999999954 567788998887778888888765433
|
| >1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-12 Score=117.63 Aligned_cols=116 Identities=18% Similarity=0.112 Sum_probs=98.0
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc--cccccc
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS--GIYNVY 498 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~--~~~~~~ 498 (704)
|+|+|+|++++.+++++++++++.+.|.++ +.+.+||+| + ++++|+|+..|++..... .....+
T Consensus 1 m~v~~~m~~~~~~v~~~~~~~~a~~~~~~~-~~~~~~Vvd-~------------~~~~G~it~~dl~~~~~~~~~~~~~~ 66 (125)
T 1pbj_A 1 MRVEDVMVTDVDTIDITASLEDVLRNYVEN-AKGSSVVVK-E------------GVRVGIVTTWDVLEAIAEGDDLAEVK 66 (125)
T ss_dssp -CHHHHCBCSCCEEETTCBHHHHHHHHHHH-CCCEEEEEE-T------------TEEEEEEEHHHHHHHHHHTCCTTTSB
T ss_pred CCHHHhcCCCceEECCCCcHHHHHHHHHHc-CCCEEEEEe-C------------CeeEEEEeHHHHHHHHhcCCcccccC
Confidence 579999999999999999999999999998 789999999 6 689999999998743221 224678
Q ss_pred cccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhh
Q psy6631 499 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREE 551 (704)
Q Consensus 499 V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~ 551 (704)
|+++|.+++.++.+++++.|+.+.|.+ .+...+||+|+++.+|.++..++..
T Consensus 67 v~~~m~~~~~~v~~~~~l~~~~~~~~~-~~~~~l~Vvd~~~~~Gvit~~dl~~ 118 (125)
T 1pbj_A 67 VWEVMERDLVTISPRATIKEAAEKMVK-NVVWRLLVEEDDEIIGVISATDILR 118 (125)
T ss_dssp HHHHCBCGGGEECTTSCHHHHHHHHHH-HTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCCeEECCCCCHHHHHHHHHh-cCCcEEEEEECCEEEEEEEHHHHHH
Confidence 999999999999999999999999954 5677888888766788888877644
|
| >2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-12 Score=123.68 Aligned_cols=118 Identities=17% Similarity=0.206 Sum_probs=100.1
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCC---------
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPS--------- 490 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~--------- 490 (704)
.++|+|+|++++.++.+++++.++++.|.++ +.+.+||+|++ ++++|+|+..|++...
T Consensus 4 ~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~-~~~~~pVvd~~------------~~lvGivt~~dl~~~~~~~~~~~~~ 70 (160)
T 2o16_A 4 MIKVEDMMTRHPHTLLRTHTLNDAKHLMEAL-DIRHVPIVDAN------------KKLLGIVSQRDLLAAQESSLQRSAQ 70 (160)
T ss_dssp CCBGGGTSEESCCCBCTTSBHHHHHHHHHHH-TCSEEEEECTT------------CBEEEEEEHHHHHHHHHHHCC----
T ss_pred cCcHHHHhcCCCeEECCCCcHHHHHHHHHHc-CCCEEEEEcCC------------CcEEEEEeHHHHHHHHHHhhccccc
Confidence 5789999999999999999999999999998 79999999976 7899999999996432
Q ss_pred -cccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhh
Q psy6631 491 -SSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREE 551 (704)
Q Consensus 491 -~~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~ 551 (704)
.......+|.++|++++.++++++++.++++.|.+ .+...+||+|+++.+|.++..++..
T Consensus 71 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~-~~~~~lpVvd~g~lvGiit~~dil~ 131 (160)
T 2o16_A 71 GDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQK-HKIGCLPVVAKDVLVGIITDSDFVT 131 (160)
T ss_dssp -----CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHH-TTCSCEEEEETTEEEEEECHHHHHH
T ss_pred ccchhcccCHHHHhcCCCeEECCCCCHHHHHHHHHH-hCCCEEEEEECCEEEEEEEHHHHHH
Confidence 12245678999999999999999999999999954 5677788888877788888888654
|
| >2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.9e-12 Score=118.08 Aligned_cols=116 Identities=9% Similarity=0.023 Sum_probs=97.8
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCe--eEEEeecCCCCCCCCc-ccccc
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSI--ILIKKLPYLPDLLPSS-SGIYN 496 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~--~LvG~Is~~dll~~~~-~~~~~ 496 (704)
.++|+|+|++++.++.++++++++++.|.++ +.+.+||+|++ + +++|+|+..|++.... .....
T Consensus 4 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~-~~~~~~Vvd~~------------~~~~~~Givt~~dl~~~~~~~~~~~ 70 (141)
T 2rih_A 4 AIRTSELLKRPPVSLPETATIREVATELAKN-RVGLAVLTARD------------NPKRPVAVVSERDILRAVAQRLDLD 70 (141)
T ss_dssp -CBGGGGCCSCCEEEETTCBHHHHHHHHHHH-TCSEEEEEETT------------EEEEEEEEEEHHHHHHHHHTTCCTT
T ss_pred ceEHHHHhcCCCeEeCCCCcHHHHHHHHHHc-CCCEEEEEcCC------------CcceeEEEEEHHHHHHHHhcCCCCC
Confidence 4789999999999999999999999999998 78999999987 7 9999999999975321 12346
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
.+++++|.+++.+++++ ++.++++.|.+ .+...+||+|+ ++.+|.++..++.
T Consensus 71 ~~v~~~m~~~~~~v~~~-~l~~a~~~m~~-~~~~~l~Vvd~~g~~~Giit~~dll 123 (141)
T 2rih_A 71 GPAMPIANSPITVLDTD-PVHVAAEKMRR-HNIRHVVVVNKNGELVGVLSIRDLC 123 (141)
T ss_dssp SBSGGGCBCCCEEETTS-BHHHHHHHHHH-HTCSEEEEECTTSCEEEEEEHHHHH
T ss_pred CCHHHHcCCCCeEEcCC-CHHHHHHHHHH-cCCeEEEEEcCCCcEEEEEEHHHHH
Confidence 78999999999999999 99999999954 56777888874 6677888777753
|
| >2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.2e-12 Score=117.19 Aligned_cols=118 Identities=13% Similarity=0.188 Sum_probs=99.6
Q ss_pred cccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc-cccccc
Q psy6631 419 YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS-SGIYNV 497 (704)
Q Consensus 419 ~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~-~~~~~~ 497 (704)
..++|+|+|.+++.++.++++++++.+.|.++ +.+.+||+| + ++++|+|+..|++.... ......
T Consensus 2 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~-~~~~~~Vvd-~------------~~~~Givt~~dl~~~~~~~~~~~~ 67 (133)
T 2ef7_A 2 EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEK-NIGSVIVVD-G------------NKPVGIITERDIVKAIGKGKSLET 67 (133)
T ss_dssp CCCBGGGTSBCSCCEEETTCBHHHHHHHHHHH-TCSEEEEEE-T------------TEEEEEEEHHHHHHHHHTTCCTTC
T ss_pred CcccHHHhccCCCEEECCCCcHHHHHHHHHhc-CCCEEEEEE-C------------CEEEEEEcHHHHHHHHhcCCCccc
Confidence 46789999999999999999999999999988 799999999 6 68999999999964322 223457
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE 551 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~ 551 (704)
+|+++|++++.++++++++.++++.|.+ .+.+.+||+|+ ++.+|.++..++..
T Consensus 68 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~-~~~~~l~Vvd~~g~~~Giit~~dll~ 121 (133)
T 2ef7_A 68 KAEEFMTASLITIREDSPITGALALMRQ-FNIRHLPVVDDKGNLKGIISIRDITR 121 (133)
T ss_dssp BGGGTSEECCCCEETTSBHHHHHHHHHH-HTCSEEEEECTTSCEEEEEEHHHHHH
T ss_pred CHHHHcCCCCEEECCCCCHHHHHHHHHH-cCCCEEEEECCCCeEEEEEEHHHHHH
Confidence 8999999999999999999999999954 56778888874 66788888877643
|
| >1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-12 Score=118.39 Aligned_cols=119 Identities=12% Similarity=0.141 Sum_probs=99.3
Q ss_pred cccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC-CCCcc--ccc
Q psy6631 419 YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL-LPSSS--GIY 495 (704)
Q Consensus 419 ~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll-~~~~~--~~~ 495 (704)
..++|+|+|++++.++.++++++++.+.|.++ +.+.+||+|++ ++++|+|+..|++ ..... ...
T Consensus 6 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~-~~~~~~Vvd~~------------~~~~Givt~~dl~~~~~~~~~~~~ 72 (133)
T 1y5h_A 6 TMTTARDIMNAGVTCVGEHETLTAAAQYMREH-DIGALPICGDD------------DRLHGMLTDRDIVIKGLAAGLDPN 72 (133)
T ss_dssp --CCHHHHSEETCCCEETTSBHHHHHHHHHHH-TCSEEEEECGG------------GBEEEEEEHHHHHHTTGGGTCCTT
T ss_pred hhcCHHHHhcCCceEeCCCCCHHHHHHHHHHh-CCCeEEEECCC------------CeEEEEEeHHHHHHHHHhcCCCcc
Confidence 35689999999999999999999999999988 78999999876 7999999999997 33222 224
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhh
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREE 551 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~ 551 (704)
..+++++|.+++.++++++++.|+++.|.+ .+...+||+++++.+|.++..++..
T Consensus 73 ~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~-~~~~~l~Vvd~g~~~Giit~~dil~ 127 (133)
T 1y5h_A 73 TATAGELARDSIYYVDANASIQEMLNVMEE-HQVRRVPVISEHRLVGIVTEADIAR 127 (133)
T ss_dssp TSBHHHHHTTCCCCEETTCCHHHHHHHHHH-HTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred ccCHHHHhcCCCEEECCCCCHHHHHHHHHH-cCCCEEEEEECCEEEEEEEHHHHHH
Confidence 678999999999999999999999999954 5677888888766788887777543
|
| >3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-12 Score=119.32 Aligned_cols=116 Identities=12% Similarity=0.031 Sum_probs=96.5
Q ss_pred cccccccc--cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc--cccc
Q psy6631 421 VYVEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS--GIYN 496 (704)
Q Consensus 421 ~~V~diM~--~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~--~~~~ 496 (704)
++|+|+|+ +++.++.++++++++++.|.++ +++.+||++++ .++++|+|+.+|++..... ....
T Consensus 2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~-~~~~~pVv~~~-----------~~~lvGivt~~dl~~~~~~~~~~~~ 69 (130)
T 3hf7_A 2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHS-PHGRIVLYRDS-----------LDDAISMLRVREAYRLMTEKKEFTK 69 (130)
T ss_dssp CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTC-SSSEEEEESSS-----------GGGEEEEEEHHHHHHHHTSSSCCCH
T ss_pred cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHC-CCCeEEEEcCC-----------CCcEEEEEEHHHHHHHHhccCccch
Confidence 67999997 4789999999999999999998 89999999752 1689999999999754332 2345
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
.+|+++| +++.++.+++++.|+++.|. .++.+.+||+|+ ++.+|.++..++.
T Consensus 70 ~~v~~~m-~~~~~v~~~~~l~~~~~~m~-~~~~~~~~Vvd~~g~lvGiit~~Dil 122 (130)
T 3hf7_A 70 EIMLRAA-DEIYFVPEGTPLSTQLVKFQ-RNKKKVGLVVDEYGDIQGLVTVEDIL 122 (130)
T ss_dssp HHHHHHS-BCCCEEETTCBHHHHHHHHH-HHCCCEEEEECTTSCEEEEEEHHHHH
T ss_pred hhHHHhc-cCCeEeCCCCcHHHHHHHHH-hcCCeEEEEEcCCCCEEEEeeHHHHH
Confidence 6899999 67899999999999999995 466778999875 6778888888764
|
| >3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.5e-12 Score=119.58 Aligned_cols=120 Identities=11% Similarity=0.087 Sum_probs=100.7
Q ss_pred ccccccccccccc--cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc--
Q psy6631 416 SGIYNVYVEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS-- 491 (704)
Q Consensus 416 ~~l~~~~V~diM~--~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~-- 491 (704)
..+..++|+|+|+ +++.++.+++++.++.+.|.++ +++.+||+|++ ++++|+|+..|++....
T Consensus 10 ~~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~-~~~~~pVvd~~------------~~~~Givt~~dl~~~~~~~ 76 (150)
T 3lqn_A 10 DEFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKS-GYSAIPVLDPM------------YKLHGLISTAMILDGILGL 76 (150)
T ss_dssp HHHHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHH-TCSEEEEECTT------------CBEEEEEEHHHHHHHTBCS
T ss_pred HhhhcCChhhcccCCCceEEECCCCcHHHHHHHHHHc-CCcEEEEECCC------------CCEEEEEEHHHHHHHHHhh
Confidence 4567899999999 5699999999999999999998 89999999977 79999999999974321
Q ss_pred -----ccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeeccc-CCCceEEeehHHHhh
Q psy6631 492 -----SGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE-SSGKFEQMEIKRREE 551 (704)
Q Consensus 492 -----~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~-~~~~~~~i~~~~~~~ 551 (704)
......+|+++|++++.++++++++.++++.|.+. +. +||+| +++.+|.++..++..
T Consensus 77 ~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~-~~--l~Vvd~~g~~~Giit~~dil~ 139 (150)
T 3lqn_A 77 ERIEFERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDH-PF--ICAVNEDGYFEGILTRRAILK 139 (150)
T ss_dssp SSBCGGGGGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHC-SE--EEEECTTCBEEEEEEHHHHHH
T ss_pred cccchhHHhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhC-CE--EEEECCCCcEEEEEEHHHHHH
Confidence 23456899999999999999999999999999653 33 88888 466788888877644
|
| >3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C | Back alignment and structure |
|---|
Probab=99.26 E-value=5.6e-13 Score=141.00 Aligned_cols=188 Identities=12% Similarity=0.021 Sum_probs=135.2
Q ss_pred ccccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCC------
Q psy6631 419 YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPS------ 490 (704)
Q Consensus 419 ~~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~------ 490 (704)
...+|.|+|.+ +++.+..++++.+|++.|.++ +++.+||+|++ .++++|+++..|+....
T Consensus 28 ~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~-~~~~~pV~d~~-----------~~~lvGilt~~Dl~~~l~~~~~~ 95 (323)
T 3t4n_C 28 NSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQN-SIVSAPLWDSK-----------TSRFAGLLTTTDFINVIQYYFSN 95 (323)
T ss_dssp HHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHT-TCSCEEEEETT-----------TTEEEEEECHHHHHHHHHHHHHC
T ss_pred HhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHc-CCceEEEEeCC-----------CCeEEEEEEHHHHHHHHHHHHcC
Confidence 45779999975 577899999999999999998 89999999865 14899999988886321
Q ss_pred -c-----cccccc------ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCC------ceEEeehHHHhhh
Q psy6631 491 -S-----SGIYNV------YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSG------KFEQMEIKRREER 552 (704)
Q Consensus 491 -~-----~~~~~~------~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~------~~~~i~~~~~~~~ 552 (704)
. ...... .+.++|.+++.++.+++++.|+++.|.+ ++...+||+++++ .+|.++..+....
T Consensus 96 ~~~~~~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~-~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~ 174 (323)
T 3t4n_C 96 PDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLE-SRSGRIPLIDQDEETHREIVVSVLTQYRILKF 174 (323)
T ss_dssp GGGGGGGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHH-HTCSEEEEEEECTTTCCEEEEEEEEHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHh-CCeeEEEEEecCCCCCccceEEEecHHHHHHH
Confidence 0 000112 3345668999999999999999999954 5666888887643 6888888887543
Q ss_pred cCCCcccccccCchhhcCCCCCCCCCCCCCCCCCCCCCCc---cc-CccccCCCchhhhcccccccccCCCCcCcccCCC
Q psy6631 553 QRRPSRFEVTPAPDLLRGNPHGVSASSDNIPRTENLDGPQ---FC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPY 628 (704)
Q Consensus 553 ~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~ 628 (704)
.....+. .+... .+..++ |+ ++.++.|++++.++...|...+++.+ ||||++
T Consensus 175 l~~~~~~-----~~~~~-----------------~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~--pVvd~~ 230 (323)
T 3t4n_C 175 VALNCRE-----THFLK-----------------IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSV--PIIDEN 230 (323)
T ss_dssp HHHHCGG-----GGGCC-----------------SBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEE--EEECTT
T ss_pred HHhcCCc-----hhhhh-----------------CcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEE--EEECCC
Confidence 2110000 00000 123444 64 78899999999999999998888887 999999
Q ss_pred CCcchHHHH--HHHHHH
Q psy6631 629 TTVTGAESR--IRMAFE 643 (704)
Q Consensus 629 g~l~G~vtr--~r~a~e 643 (704)
|+++|++|+ +..++.
T Consensus 231 ~~~~Giit~~dl~~~~~ 247 (323)
T 3t4n_C 231 GYLINVYEAYDVLGLIK 247 (323)
T ss_dssp CBEEEEEETTHHHHHHH
T ss_pred CeEEEEEeHHHHHHHHh
Confidence 999999999 444443
|
| >3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-12 Score=119.72 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=96.7
Q ss_pred cccccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccc
Q psy6631 418 IYNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIY 495 (704)
Q Consensus 418 l~~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~ 495 (704)
+..++|+|+|++ ++.++.++++++++.+.|.++ +++.+||+|++ .++++|+|+.+|++........
T Consensus 3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~-~~~~~pVvd~~-----------~~~~~Givt~~dl~~~~~~~~~ 70 (130)
T 3i8n_A 3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDT-PFSRPLVYSEQ-----------KDNIIGFVHRLELFKMQQSGSG 70 (130)
T ss_dssp ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTC-SCSCCEEESSS-----------TTCEEEECCHHHHHHHHHTTTT
T ss_pred cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhC-CCCEEEEEeCC-----------CCcEEEEEEHHHHHHHHhcCCC
Confidence 456889999994 567899999999999999988 89999999853 1589999999999865444445
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
..+|+++|+ ++.++.+++++.++++.|. ..+.+.+||+|+ ++.+|.++..++.
T Consensus 71 ~~~v~~~m~-~~~~v~~~~~l~~~~~~m~-~~~~~~~~Vvd~~g~~vGivt~~dil 124 (130)
T 3i8n_A 71 QKQLGAVMR-PIQVVLNNTALPKVFDQMM-THRLQLALVVDEYGTVLGLVTLEDIF 124 (130)
T ss_dssp TSBHHHHSE-ECCEEETTSCHHHHHHHHH-HHTCCEEEEECTTSCEEEEEEHHHHH
T ss_pred cCCHHHHhc-CCcCcCCCCcHHHHHHHHH-HcCCeEEEEEcCCCCEEEEEEHHHHH
Confidence 778999995 6899999999999999995 467788999875 6778888888764
|
| >3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.6e-12 Score=121.96 Aligned_cols=118 Identities=19% Similarity=0.256 Sum_probs=100.4
Q ss_pred cccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc------
Q psy6631 420 NVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS------ 491 (704)
Q Consensus 420 ~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~------ 491 (704)
.++|+|+|++ ++.++.+++++.++++.|.++ +++.+||+|++ ++++|+|+..|++....
T Consensus 3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~-~~~~~pVvd~~------------~~~~Givt~~dl~~~~~~~~~~~ 69 (180)
T 3sl7_A 3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEK-KVTGLPVIDDN------------WTLVGVVSDYDLLALDSISGRSQ 69 (180)
T ss_dssp CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHH-TCSEEEEECTT------------CBEEEEEEHHHHTCC--------
T ss_pred ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHc-CCCeEEEECCC------------CeEEEEEEHHHHHhhhhhccccC
Confidence 4789999998 899999999999999999998 89999999977 79999999999975311
Q ss_pred -----------------------ccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeeccc-CCCceEEeehH
Q psy6631 492 -----------------------SGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE-SSGKFEQMEIK 547 (704)
Q Consensus 492 -----------------------~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~-~~~~~~~i~~~ 547 (704)
......+|+++|++++.++++++++.++++.| ...+...+||++ +++.+|.++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m-~~~~~~~lpVvd~~g~~vGiit~~ 148 (180)
T 3sl7_A 70 NDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLL-LETKFRRLPVVDADGKLIGILTRG 148 (180)
T ss_dssp -----------CCCSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHH-TTSTTCEEEEECTTCBEEEEEEHH
T ss_pred CcccccccccchhhhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHH-HHcCCCEEEEECCCCeEEEEEEHH
Confidence 12345789999999999999999999999999 457788899998 46778888887
Q ss_pred HHhh
Q psy6631 548 RREE 551 (704)
Q Consensus 548 ~~~~ 551 (704)
++..
T Consensus 149 dil~ 152 (180)
T 3sl7_A 149 NVVR 152 (180)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5e-12 Score=120.22 Aligned_cols=120 Identities=14% Similarity=0.176 Sum_probs=100.8
Q ss_pred cccccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCC--Ccccc
Q psy6631 417 GIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLP--SSSGI 494 (704)
Q Consensus 417 ~l~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~--~~~~~ 494 (704)
.+..++|+|+|++. +++.+++++.++.+.|.++ +.+.+||+|++ ++++|+|+..|++.. .....
T Consensus 13 ~l~~~~v~~im~~~-~~v~~~~~~~~a~~~m~~~-~~~~~~Vvd~~------------~~~~Givt~~dl~~~~~~~~~~ 78 (159)
T 3fv6_A 13 KLKKLQVKDFQSIP-VVIHENVSVYDAICTMFLE-DVGTLFVVDRD------------AVLVGVLSRKDLLRASIGQQEL 78 (159)
T ss_dssp HHTTCBGGGSCBCC-CEEETTSBHHHHHHHHHHH-TCSEEEEECTT------------SCEEEEEEHHHHHHHHTSCSCT
T ss_pred HHhhCCHHHHcCCC-EEECCCCcHHHHHHHHHHC-CCCEEEEEcCC------------CcEEEEEeHHHHHHHhhccCcc
Confidence 34578999999984 5999999999999999998 79999999977 789999999999753 23344
Q ss_pred ccccccccccc--CceEEeCCCCHHHHHHHhHhcCCCceeecccCC----CceEEeehHHHhh
Q psy6631 495 YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS----GKFEQMEIKRREE 551 (704)
Q Consensus 495 ~~~~V~dvM~~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~----~~~~~i~~~~~~~ 551 (704)
...+|+++|++ ++.++++++++.++++.|. ..+...+||+|++ +.+|.++..++..
T Consensus 79 ~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~-~~~~~~lpVvd~~g~~~~~vGiit~~dil~ 140 (159)
T 3fv6_A 79 TSVPVHIIMTRMPNITVCRREDYVMDIAKHLI-EKQIDALPVIKDTDKGFEVIGRVTKTNMTK 140 (159)
T ss_dssp TTCBGGGTSEETTSCCCBCTTSBHHHHHHHHH-HHTCSEEEEEEECSSSEEEEEEEEHHHHHH
T ss_pred cCcCHHHHHcCCCCcEEECCCCCHHHHHHHHH-HcCCcEEEEEeCCCcceeEEEEEEHHHHHH
Confidence 66799999998 9999999999999999995 4667788998875 5678777777543
|
| >3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.24 E-value=6e-12 Score=121.57 Aligned_cols=119 Identities=11% Similarity=0.173 Sum_probs=97.9
Q ss_pred ccccccccccc--cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccc
Q psy6631 418 IYNVYVEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIY 495 (704)
Q Consensus 418 l~~~~V~diM~--~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~ 495 (704)
+..++|+|+|+ +++.++++++++.++++.|.++ +++.+||+|++ .++++|+|+..|++...... .
T Consensus 39 l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~-~~~~~pVvd~~-----------~~~lvGivt~~dl~~~~~~~-~ 105 (172)
T 3lhh_A 39 LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQS-PHSRFPVCRNN-----------VDDMVGIISAKQLLSESIAG-E 105 (172)
T ss_dssp ----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTC-CCSEEEEESSS-----------TTSEEEEEEHHHHHHHHHTT-C
T ss_pred cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhC-CCCEEEEEeCC-----------CCeEEEEEEHHHHHHHHhhc-C
Confidence 45689999999 7899999999999999999998 89999999853 15799999999997543322 2
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE 551 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~ 551 (704)
..+|+++| +++.++.+++++.++++.|. ..+.+.+||+|+ ++.+|.++..++..
T Consensus 106 ~~~v~~im-~~~~~v~~~~~l~~a~~~m~-~~~~~~~pVvd~~g~lvGiit~~Dil~ 160 (172)
T 3lhh_A 106 RLELVDLV-KNCNFVPNSLSGMELLEHFR-TTGSQMVFVVDEYGDLKGLVTLQDMMD 160 (172)
T ss_dssp CCCGGGGC-BCCEEEETTCCHHHHHHHHH-HHTCSEEEEECTTSCEEEEEEHHHHHH
T ss_pred cccHHHHh-cCCeEeCCCCCHHHHHHHHH-HcCCeEEEEEeCCCCEEEEeeHHHHHH
Confidence 67899999 89999999999999999995 466788999986 67788888887643
|
| >2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.2e-12 Score=121.17 Aligned_cols=122 Identities=16% Similarity=0.234 Sum_probs=100.1
Q ss_pred ccccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccc----
Q psy6631 418 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSG---- 493 (704)
Q Consensus 418 l~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~---- 493 (704)
...++|+|+|++++.++.+++++.++.+.|.++ +.+.+||+|++ ++++++|+|+..|++......
T Consensus 10 ~~~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~-~~~~~pVvd~~----------~~~~~~Givt~~dl~~~~~~~~~~~ 78 (164)
T 2pfi_A 10 SHHVRVEHFMNHSITTLAKDTPLEEVVKVVTST-DVTEYPLVEST----------ESQILVGIVQRAQLVQALQAEPPSR 78 (164)
T ss_dssp CCSCBHHHHCBCCCCCEETTCBHHHHHHHHHTC-CCSEEEEESCT----------TTCBEEEEEEHHHHHHHHHC-----
T ss_pred ccCCCHHHHcCCCCeEECCCCcHHHHHHHHHhC-CCCceeEEecC----------CCCEEEEEEEHHHHHHHHHhhcccc
Confidence 346889999999999999999999999999988 89999999861 127899999999986432111
Q ss_pred --ccccccccccccC------ceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhh
Q psy6631 494 --IYNVYVEDFMVRD------VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREE 551 (704)
Q Consensus 494 --~~~~~V~dvM~~~------v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~ 551 (704)
....++.++|.++ +.++++++++.|+++.|. ..+...+||+|+++.+|.++..++..
T Consensus 79 ~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~-~~~~~~lpVvd~g~l~Giit~~dil~ 143 (164)
T 2pfi_A 79 APGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFK-LLNLQSLFVTSRGRAVGCVSWVEMKK 143 (164)
T ss_dssp --CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHH-HTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CCcccchhhhhhcccccccCCceEECCCCcHHHHHHHHH-HhCCCEEEEEECCEEEEEEEHHHHHH
Confidence 1346799999987 789999999999999995 46777899998777788888877643
|
| >2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=6.2e-12 Score=115.72 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=98.6
Q ss_pred cccccccc---cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCC-CCc--ccc
Q psy6631 421 VYVEDFMV---RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLL-PSS--SGI 494 (704)
Q Consensus 421 ~~V~diM~---~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~-~~~--~~~ 494 (704)
++|+|+|+ +++.++++++++.++++.|.++ +.+.+||+| + ++++|+|+..|++. ... ...
T Consensus 6 ~~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~-~~~~~~Vvd-~------------~~~~Givt~~dl~~~~~~~~~~~ 71 (135)
T 2rc3_A 6 KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAAD-NIGALLVMK-D------------EKLVGILTERDFSRKSYLLDKPV 71 (135)
T ss_dssp CBHHHHHHHHCCCCCEECTTSBHHHHHHHHHHH-TCSEEEEEE-T------------TEEEEEEEHHHHHHHGGGSSSCG
T ss_pred eeHHHHHhcCCCCcEEECCCCcHHHHHHHHHhc-CCCEEEEEE-C------------CEEEEEEehHHHHHHHHHcCCCc
Confidence 38999999 8999999999999999999998 799999998 6 68999999999973 222 234
Q ss_pred cccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhh
Q psy6631 495 YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREE 551 (704)
Q Consensus 495 ~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~ 551 (704)
...+|+++|++++.++++++++.++++.|.+ .+...+||+|+++.+|.++..++..
T Consensus 72 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~-~~~~~lpVvd~g~~~Giit~~dll~ 127 (135)
T 2rc3_A 72 KDTQVKEIMTRQVAYVDLNNTNEDCMALITE-MRVRHLPVLDDGKVIGLLSIGDLVK 127 (135)
T ss_dssp GGSBGGGTSBCSCCCBCTTCBHHHHHHHHHH-HTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred ccCCHHHhccCCCeEECCCCcHHHHHHHHHH-hCCCEEEEEeCCEEEEEEEHHHHHH
Confidence 6789999999999999999999999999954 5667788888666788888877644
|
| >3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.22 E-value=8.9e-12 Score=118.97 Aligned_cols=113 Identities=12% Similarity=0.129 Sum_probs=93.7
Q ss_pred ccccccc--cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCC------ccc
Q psy6631 422 YVEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPS------SSG 493 (704)
Q Consensus 422 ~V~diM~--~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~------~~~ 493 (704)
+++++|+ +++.++.+++|+++|+++|.++ +++++||+|++ ++++|+|+.+|++... ...
T Consensus 16 ~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~-~~s~~pVvd~~------------~~lvGiit~~Di~~~~~~~~~~~~~ 82 (156)
T 3k6e_A 16 QEETFLTPAKNLAVLIDTHNADHATLLLSQM-TYTRVPVVTDE------------KQFVGTIGLRDIMAYQMEHDLSQEI 82 (156)
T ss_dssp TGGGGEEETTSSCCEETTSBHHHHHHHHTTS-SSSEEEEECC-------------CBEEEEEEHHHHHHHHHHHTCCHHH
T ss_pred cHHHhCcchhHeEEECCcCCHHHHHHHHHHc-CCcEEEEEcCC------------CcEEEEEEecchhhhhhhccccccc
Confidence 5899998 4799999999999999999998 89999999877 7899999999986431 223
Q ss_pred ccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 494 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 494 ~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
....+|+++|++++.++++++++.++++.|.+ + +++||+|+ ++.+|.++..++.
T Consensus 83 ~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~-~--~~lpVVd~~g~l~GiiT~~Dil 137 (156)
T 3k6e_A 83 MADTDIVHMTKTDVAVVSPDFTITEVLHKLVD-E--SFLPVVDAEGIFQGIITRKSIL 137 (156)
T ss_dssp HTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTT-S--SEEEEECTTSBEEEEEEHHHHH
T ss_pred ccccCHHHhhcCCceecccccHHHHHHHHHHH-c--CCeEEEecCCEEEEEEEHHHHH
Confidence 35678999999999999999999999999943 2 35899876 5667777777754
|
| >2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.7e-12 Score=123.33 Aligned_cols=122 Identities=11% Similarity=0.090 Sum_probs=99.8
Q ss_pred ccccccccccccccc----eEEe--cCCCCHHHHHHHHHhcCCccEEEee--cCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 416 SGIYNVYVEDFMVRD----VKYI--WNNMTYRDLKNLLKENRSLRVFPLV--ESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 416 ~~l~~~~V~diM~~~----v~~v--~~~~tl~ea~~~l~~~~~~~~~PVV--d~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
+.+..++|+|+|+++ +.++ .+++++.++.+.|.++ +++.+||+ |++ ++++|+|+..|++
T Consensus 6 ~~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~-~~~~~pVv~~d~~------------~~lvGiit~~dl~ 72 (185)
T 2j9l_A 6 EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISET-TYSGFPVVVSRES------------QRLVGFVLRRDLI 72 (185)
T ss_dssp ---CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHC-CCSEEEEESCTTT------------CBEEEEEEHHHHH
T ss_pred hhhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhc-CCCceeEEEECCC------------CeEEEEEEHHHHH
Confidence 345678999999987 7888 9999999999999998 89999999 555 7999999999986
Q ss_pred CCCc--------------------------ccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCce
Q psy6631 488 LPSS--------------------------SGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKF 541 (704)
Q Consensus 488 ~~~~--------------------------~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~ 541 (704)
.... ......+|+++|++++.++++++++.++++.|.+ .+.+.+||+++++.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~-~~~~~l~Vvd~g~~v 151 (185)
T 2j9l_A 73 ISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRK-LGLRQCLVTHNGRLL 151 (185)
T ss_dssp HHHHHHHTSCSCCCTTCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHH-HTCSEEEEEETTEEE
T ss_pred HHHHhhcccCCCccccceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHh-CCCcEEEEEECCEEE
Confidence 4311 1134578999999999999999999999999954 567788888877778
Q ss_pred EEeehHHHhh
Q psy6631 542 EQMEIKRREE 551 (704)
Q Consensus 542 ~~i~~~~~~~ 551 (704)
|.++..++..
T Consensus 152 Giit~~dll~ 161 (185)
T 2j9l_A 152 GIITKKDVLK 161 (185)
T ss_dssp EEEEHHHHHH
T ss_pred EEEEHHHHHH
Confidence 8888877654
|
| >1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-11 Score=120.21 Aligned_cols=119 Identities=15% Similarity=0.089 Sum_probs=102.3
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc---ccccc
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS---SGIYN 496 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~---~~~~~ 496 (704)
.++|+|+|++++.++.+++++++++++|.++ +.+.+||+|++ ++++|+|+.+|++.... .....
T Consensus 8 ~~~v~~im~~~~~~v~~~~~l~ea~~~~~~~-~~~~~pVvd~~------------g~~vGivt~~dl~~~~~~~~~~~~~ 74 (184)
T 1pvm_A 8 FMRVEKIMNSNFKTVNWNTTVFDAVKIMNEN-HLYGLVVKDDN------------GNDVGLLSERSIIKRFIPRNKKPDE 74 (184)
T ss_dssp CCBGGGTSBTTCCEEETTCBHHHHHHHHHHH-TCCEEEEECTT------------SCEEEEEEHHHHHHHTGGGCCCGGG
T ss_pred ccCHHHhcCCCCeEECCCCcHHHHHHHHHHc-CCCEEEEEcCC------------CcEEEEEeHHHHHHHHhhcccCccc
Confidence 4789999999999999999999999999998 79999999876 78999999999975432 23456
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhh
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREER 552 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~ 552 (704)
.+++++|++++.++.+++++.++++.|.+ .+...+||+|+ ++.+|.++..++...
T Consensus 75 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~-~~~~~lpVvd~~g~~~Givt~~dll~~ 130 (184)
T 1pvm_A 75 VPIRLVMRKPIPKVKSDYDVKDVAAYLSE-NGLERCAVVDDPGRVVGIVTLTDLSRY 130 (184)
T ss_dssp SBGGGTSBSSCCEEETTCBHHHHHHHHHH-HTCSEEEEECTTCCEEEEEEHHHHTTT
T ss_pred CCHHHHhCCCCcEECCCCCHHHHHHHHHH-cCCcEEEEEcCCCeEEEEEEHHHHHHH
Confidence 78999999999999999999999999954 56778899887 677888888886543
|
| >3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.22 E-value=5e-12 Score=119.43 Aligned_cols=118 Identities=16% Similarity=0.145 Sum_probs=98.9
Q ss_pred ccccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEee-cCccccccCCCCcCCeeEEEeecCCCCCCCCccccc
Q psy6631 419 YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLV-ESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIY 495 (704)
Q Consensus 419 ~~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVV-d~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~ 495 (704)
..++|+|+|++ ++.++.+++++.++.+.|.++ +++.+||+ |++ .++++|+|+..|++...... .
T Consensus 18 ~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~-~~~~~pVv~d~~-----------~~~lvGivt~~dl~~~~~~~-~ 84 (153)
T 3oco_A 18 NDKVASDVMVDRTSMSVVDVDETIADALLLYLEE-QYSRFPVTADND-----------KDKIIGYAYNYDIVRQARID-D 84 (153)
T ss_dssp HHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHH-CCSEEEEEETTE-----------EEEEEEEEEHHHHHHHHHHH-T
T ss_pred CCCEeeeEecchhheEEEcCCCCHHHHHHHHHhC-CCCEEEEEECCC-----------CCcEEEEEEHHHHHhHHhcC-C
Confidence 45789999996 899999999999999999998 89999999 542 27999999999997542222 2
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE 551 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~ 551 (704)
..+|+++| +++.++.+++++.++++.|. ..+.+.+||+++ ++.+|.++..++..
T Consensus 85 ~~~v~~~m-~~~~~v~~~~~l~~~~~~m~-~~~~~~lpVvd~~g~~vGivt~~dil~ 139 (153)
T 3oco_A 85 KAKISTIM-RDIVSVPENMKVPDVMEEMS-AHRVPMAIVIDEYGGTSGIITDKDVYE 139 (153)
T ss_dssp TSBGGGTC-BCCEEEETTSBHHHHHHHHH-HTTCSCEEEECTTSCEEEEECHHHHHH
T ss_pred CCcHHHHh-CCCeEECCCCCHHHHHHHHH-HcCCcEEEEEeCCCCEEEEeeHHHHHH
Confidence 67899999 89999999999999999995 567788999986 67788888887643
|
| >2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-11 Score=116.12 Aligned_cols=119 Identities=10% Similarity=0.086 Sum_probs=98.3
Q ss_pred ccccccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc--
Q psy6631 417 GIYNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS-- 492 (704)
Q Consensus 417 ~l~~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~-- 492 (704)
.+..++|+|+|.+ ++.++.+++++.++.+.|.++ +.+.+||+|++ ++++|+|+..|++.....
T Consensus 7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~-~~~~~pVvd~~------------~~~~Givt~~dl~~~~~~~~ 73 (157)
T 2emq_A 7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKT-GYSAIPVLDTS------------YKLHGLISMTMMMDAILGLE 73 (157)
T ss_dssp ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHS-SSSEEEEECTT------------CCEEEEEEHHHHHHHSBCSS
T ss_pred hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHC-CceEEEEEcCC------------CCEEEEeeHHHHHHHHhccc
Confidence 3457899999997 899999999999999999998 89999999977 789999999999743321
Q ss_pred -----cccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh
Q psy6631 493 -----GIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE 551 (704)
Q Consensus 493 -----~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~ 551 (704)
.....+|+++|.+++.++++++++.++++.|.+. +. +||+++ ++.+|.++..++..
T Consensus 74 ~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-~~--l~Vvd~~g~~~Giit~~dil~ 135 (157)
T 2emq_A 74 RIEFERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNH-PF--VCVENDDGYFAGIFTRREVLK 135 (157)
T ss_dssp SBCGGGGGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHS-SE--EEEECSSSSEEEEEEHHHHHH
T ss_pred ccchHHhcCCcHHHHhCCCCceecCCCcHHHHHHHHhhC-CE--EEEEcCCCeEEEEEEHHHHHH
Confidence 2356789999999999999999999999999653 33 888885 66788888877644
|
| >2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-12 Score=137.10 Aligned_cols=183 Identities=13% Similarity=0.041 Sum_probs=134.1
Q ss_pred cccccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc----
Q psy6631 418 IYNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS---- 491 (704)
Q Consensus 418 l~~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~---- 491 (704)
+...+|+|+|++ +++++++++|+.++++.|.++ +++.+||+|++ .++++|+|+.+|++....
T Consensus 19 l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~-~~~~~pV~d~~-----------~~~~vGiv~~~Dl~~~~~~~~~ 86 (334)
T 2qrd_G 19 IRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLN-NIVSAPLWDSE-----------ANKFAGLLTMADFVNVIKYYYQ 86 (334)
T ss_dssp HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHH-TCSCEEEEETT-----------TTEEEEEECHHHHHHHHHHHHH
T ss_pred HhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHc-CCeEEEEEeCC-----------CCeEEEEEEHHHHHHHHHHHhh
Confidence 345789999975 578899999999999999998 89999999864 158999999999874210
Q ss_pred ----cc----cccccc-------ccccccCc--eEEeCCCCHHHHHHHhHhcCCCceeecccCC--C----ceEEeehHH
Q psy6631 492 ----SG----IYNVYV-------EDFMVRDV--KYIWNNMTYRDLKNLLKENRSLRVFPLVESS--G----KFEQMEIKR 548 (704)
Q Consensus 492 ----~~----~~~~~V-------~dvM~~~v--~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~--~----~~~~i~~~~ 548 (704)
.. ....++ +++|.+++ .++.+++++.++.+.|.+ .+...+||+++. . .+|.++..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~-~~~~~~~Vvd~~~~~~~~~~~Givt~~d 165 (334)
T 2qrd_G 87 SSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSK-SRARRIPLIDVDGETGSEMIVSVLTQYR 165 (334)
T ss_dssp HCSCGGGGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHH-SCCSEEEEEEEETTTTEEEEEEEEEHHH
T ss_pred ccCCccHHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHH-CCceEEEEEeCCCCcCccceEEEeeHHH
Confidence 00 002222 34577777 999999999999999954 567788888752 3 688888888
Q ss_pred HhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCCCCCCCCC---ccc-CccccCCCchhhhcccccccccCCCCcCcc
Q psy6631 549 REERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPRTENLDGP---QFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPN 624 (704)
Q Consensus 549 ~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pv 624 (704)
+....... . ...+... .+..+ +|. ++..+.|++++.++...|...+++.+ ||
T Consensus 166 l~~~~~~~----~-~~~~~~~-----------------~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~--~V 221 (334)
T 2qrd_G 166 ILKFISMN----C-KETAMLR-----------------VPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAV--PI 221 (334)
T ss_dssp HHHHHHHH----C-GGGGGCC-----------------CBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEE--EE
T ss_pred HHHHHHhh----c-cchhhhh-----------------CcHHHhCCcccCCceEECCCCcHHHHHHHHHHcCCcEE--EE
Confidence 65432100 0 0000000 01223 465 78889999999999999988888876 99
Q ss_pred cCCCCCcchHHHH
Q psy6631 625 VTPYTTVTGAESR 637 (704)
Q Consensus 625 v~~~g~l~G~vtr 637 (704)
+|++|+++|++|+
T Consensus 222 vd~~~~~~Giit~ 234 (334)
T 2qrd_G 222 VNSEGTLLNVYES 234 (334)
T ss_dssp ECTTCBEEEEEET
T ss_pred EcCCCcEEEEEEH
Confidence 9999999999998
|
| >1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=7.5e-12 Score=118.63 Aligned_cols=120 Identities=9% Similarity=0.137 Sum_probs=100.5
Q ss_pred ccccccccccccccceEEecCCCCHHHHHHHHHhcCCccE-EEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc---
Q psy6631 416 SGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRV-FPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS--- 491 (704)
Q Consensus 416 ~~l~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~-~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~--- 491 (704)
.....++|+|+|++++.++.+++++.++++.|.++ +.+. +||+|++ +++|+|+..|++....
T Consensus 11 ~~~~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~-~~~~~~~Vvd~~-------------~~vGivt~~dl~~~~~~~~ 76 (157)
T 1o50_A 11 HHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILED-PVTRTVYVARDN-------------KLVGMIPVMHLLKVSGFHF 76 (157)
T ss_dssp TTCBHHHHTTSSCCCCEEECTTCBHHHHHHHHHHS-TTCCEEEEEETT-------------EEEEEEEHHHHHHHHHHHH
T ss_pred hhhccccHhhcccCCCceECCCCCHHHHHHHHHhC-CCCccEEEEECC-------------EEEEEEEHHHHHHHHhhhH
Confidence 34557899999999999999999999999999998 7899 9999854 7999999999874310
Q ss_pred --------------ccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeeccc-CCCceEEeehHHHhh
Q psy6631 492 --------------SGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE-SSGKFEQMEIKRREE 551 (704)
Q Consensus 492 --------------~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~-~~~~~~~i~~~~~~~ 551 (704)
......+|+++|++ ++++++++++.++++.|.+ .+.+.+||+| +++.+|.++..++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~-~~~~~lpVvd~~g~~vGiit~~dll~ 149 (157)
T 1o50_A 77 FGFIPKEELIRSSMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMID-NNIQEMPVVDEKGEIVGDLNSLEILL 149 (157)
T ss_dssp HCCCC-------CCCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHH-HTCSEEEEECTTSCEEEEEEHHHHHH
T ss_pred HhhhccHHHHHHHHHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHH-CCCcEEEEEcCCCEEEEEEEHHHHHH
Confidence 23456789999999 9999999999999999954 5677889988 567788888877644
|
| >1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=9.2e-12 Score=118.10 Aligned_cols=118 Identities=11% Similarity=0.054 Sum_probs=99.2
Q ss_pred cccccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc---
Q psy6631 418 IYNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS--- 492 (704)
Q Consensus 418 l~~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~--- 492 (704)
+..++|+|+|.+ ++.++.+++++.++++.|.++ +.+.+||+|++ ++++|+|+..|++.....
T Consensus 11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~-~~~~~pVvd~~------------~~lvGivt~~dl~~~~~~~~~ 77 (159)
T 1yav_A 11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKT-GYTAIPVLDPS------------YRLHGLIGTNMIMNSIFGLER 77 (159)
T ss_dssp CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHH-CCSEEEEECTT------------CBEEEEEEHHHHHHHHBCSSS
T ss_pred HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhC-CCcEEEEECCC------------CCEEEEeEHHHHHHHhhhhcc
Confidence 446899999998 899999999999999999998 89999999977 799999999998743221
Q ss_pred ----cccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh
Q psy6631 493 ----GIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE 551 (704)
Q Consensus 493 ----~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~ 551 (704)
.....+|+++|.+++.++++++++.++++.|.+ .+ ++||+|+ ++.+|.++..++..
T Consensus 78 ~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~-~~--~lpVvd~~g~~vGiit~~dil~ 138 (159)
T 1yav_A 78 IEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVIN-NG--FVCVENDEQVFEGIFTRRVVLK 138 (159)
T ss_dssp BCGGGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTT-CS--EEEEECTTCBEEEEEEHHHHHH
T ss_pred cchhhhccCCHHHhcCCCCceEcCCCCHHHHHHHHHh-CC--EEEEEeCCCeEEEEEEHHHHHH
Confidence 135678999999999999999999999999953 33 3899884 67788888887654
|
| >1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=8.3e-11 Score=117.88 Aligned_cols=113 Identities=9% Similarity=0.005 Sum_probs=99.5
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccc
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVE 500 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~ 500 (704)
.+++++|.+++.++.+++|++|++++|.++ +.+++||+|++ ++++|+|+..|+..... ..+|+
T Consensus 13 ~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~-~~~~~pVvd~~------------~~l~Givt~~dl~~~~~----~~~v~ 75 (213)
T 1vr9_A 13 MKVKKWVTQDFPMVEESATVRECLHRMRQY-QTNECIVKDRE------------GHFRGVVNKEDLLDLDL----DSSVF 75 (213)
T ss_dssp CBGGGGCBSCSCEEETTCBHHHHHHHHHHT-TSSEEEEECTT------------SBEEEEEEGGGGTTSCT----TSBSG
T ss_pred cCHHHhhcCCCeEECCCCcHHHHHHHHHHC-CCCEEEEEcCC------------CEEEEEEEHHHHHhhcC----CCcHH
Confidence 569999999999999999999999999998 89999999876 78999999999976543 46899
Q ss_pred cccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh
Q psy6631 501 DFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE 551 (704)
Q Consensus 501 dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~ 551 (704)
++|++++.++++++++.|+++.|. ..+...+||+|+ ++.+|.++..++..
T Consensus 76 ~im~~~~~~v~~~~~l~~a~~~m~-~~~~~~lpVvd~~g~lvGiit~~Dil~ 126 (213)
T 1vr9_A 76 NKVSLPDFFVHEEDNITHALLLFL-EHQEPYLPVVDEEMRLKGAVSLHDFLE 126 (213)
T ss_dssp GGCBCTTCCEETTSBHHHHHHHHH-HCCCSEEEEECTTCBEEEEEEHHHHHH
T ss_pred HHccCCCEEECCCCcHHHHHHHHH-HhCCCEEEEEcCCCEEEEEEEHHHHHH
Confidence 999999999999999999999995 467778999986 66788888887654
|
| >3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.8e-11 Score=117.69 Aligned_cols=117 Identities=7% Similarity=0.077 Sum_probs=99.9
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcC--CccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccc
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENR--SLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNV 497 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~--~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~ 497 (704)
..+|+++|+++++++++++|++++++.++++. +...+||+|++ ++++|+|+.+|++... ...
T Consensus 53 ~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~------------~~lvGivt~~dll~~~----~~~ 116 (205)
T 3kxr_A 53 ENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEA------------DKYLGTVRRYDIFKHE----PHE 116 (205)
T ss_dssp TTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTT------------CBEEEEEEHHHHTTSC----TTS
T ss_pred cchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCC------------CeEEEEEEHHHHHhCC----Ccc
Confidence 35799999999999999999999999999731 46889999977 7999999999997643 356
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhc
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQ 553 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~ 553 (704)
+|+++|++++.++++++++.++++.| ...++..+||+|+ ++.+|.++..++....
T Consensus 117 ~v~~im~~~~~~v~~~~~l~~a~~~m-~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i 172 (205)
T 3kxr_A 117 PLISLLSEDSRALTANTTLLDAAEAI-EHSREIELPVIDDAGELIGRVTLRAATALV 172 (205)
T ss_dssp BGGGGCCSSCCCEETTSCHHHHHHHH-HTSSCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred hHHHHhcCCCeEECCCCCHHHHHHHH-HhcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence 89999999999999999999999999 4677889999986 6678888888765433
|
| >4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.7e-11 Score=115.88 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=98.4
Q ss_pred cccccccc------cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc---
Q psy6631 421 VYVEDFMV------RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS--- 491 (704)
Q Consensus 421 ~~V~diM~------~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~--- 491 (704)
.+|+|+|+ +++.++.++++++++++.|.++ +++.+||+| + ++++|+|+..|++....
T Consensus 7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~-~~~~~~V~~-~------------~~~~Givt~~dl~~~~~~~~ 72 (157)
T 4fry_A 7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEK-GIGALLVVD-G------------DDIAGIVTERDYARKVVLQE 72 (157)
T ss_dssp CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHH-TCSEEEEES-S------------SSEEEEEEHHHHHHHSGGGT
T ss_pred HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHc-CCCEEEEee-C------------CEEEEEEEHHHHHHHHHhcc
Confidence 56999999 5679999999999999999998 799999965 4 68999999999975422
Q ss_pred ccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhc
Q psy6631 492 SGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQ 553 (704)
Q Consensus 492 ~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~ 553 (704)
......+|+++|++++.++++++++.|+++.|.+ .+...+||+|+++.+|.++..++....
T Consensus 73 ~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~-~~~~~lpVvd~g~~~Giit~~dil~~l 133 (157)
T 4fry_A 73 RSSKATRVEEIMTAKVRYVEPSQSTDECMALMTE-HRMRHLPVLDGGKLIGLISIGDLVKSV 133 (157)
T ss_dssp CCSSSCBHHHHSBSSCCCBCTTSBHHHHHHHHHH-HTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred CCccccCHHHHcCCCCcEECCCCcHHHHHHHHHH-cCCCEEEEEECCEEEEEEEHHHHHHHH
Confidence 1235789999999999999999999999999954 566678888877778888888875543
|
| >2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=6.4e-12 Score=129.61 Aligned_cols=151 Identities=21% Similarity=0.228 Sum_probs=99.0
Q ss_pred ccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC---CCceEEeehHHHhhhcC----CCc-------
Q psy6631 492 SGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES---SGKFEQMEIKRREERQR----RPS------- 557 (704)
Q Consensus 492 ~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~---~~~~~~i~~~~~~~~~~----~~s------- 557 (704)
......+|+|+|++++.++++++++.|++++|. ..+..-+||+|+ +..+|.+++.++..... ...
T Consensus 8 ~~~~~~~v~diMt~~vvtv~~~~tv~~~~~lm~-~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~ 86 (250)
T 2d4z_A 8 ANKYNIQVGDIMVRDVTSIASTSTYGDLLHVLR-QTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAA 86 (250)
T ss_dssp CCCSSCBTTSSSBSSCCCEETTCBHHHHHHHHH-HCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCC
T ss_pred cccCCCChHHhcCCCCeEECCCCCHHHHHHHHH-hcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhh
Confidence 345678999999999999999999999999995 466788999986 35799999999864221 111
Q ss_pred --------cccccc----CchhhcCCC----------C--C-----C----------------------------C---C
Q psy6631 558 --------RFEVTP----APDLLRGNP----------H--G-----V----------------------------S---A 577 (704)
Q Consensus 558 --------r~~v~~----~~~~l~~~~----------~--~-----~----------------------------~---~ 577 (704)
|+++.+ +++.+.-.. . . + + .
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (250)
T 2d4z_A 87 EADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASR 166 (250)
T ss_dssp CBCCC---------------------------------------------------------------------------
T ss_pred cccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcc
Confidence 111111 011100000 0 0 0 0 0
Q ss_pred CCCCCCC----------CCCCC---CCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH--HHHH
Q psy6631 578 SSDNIPR----------TENLD---GPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR--IRMA 641 (704)
Q Consensus 578 ~~~~~~~----------~~~~~---~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr--~r~a 641 (704)
...++.+ ...+. ..+|. .+++++|++|++|++.+|..++++++ ||++ .|+|+||||| ++.|
T Consensus 167 ~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l--~V~~-~GrLVGIVTrkDl~ka 243 (250)
T 2d4z_A 167 FEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRA--YVTS-MGKLVGVVALAEIQAA 243 (250)
T ss_dssp CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEE--EEEE-TTEEEEEEEHHHHHHH
T ss_pred cccccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEE--EEEE-CCEEEEEEEHHHHHHH
Confidence 0000000 00122 23455 99999999999999999999999998 8775 7999999999 9999
Q ss_pred HHHHh
Q psy6631 642 FEAIF 646 (704)
Q Consensus 642 ~e~~~ 646 (704)
+++.+
T Consensus 244 i~~~~ 248 (250)
T 2d4z_A 244 IEGSY 248 (250)
T ss_dssp HHC--
T ss_pred HHHHh
Confidence 98654
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=9.4e-11 Score=133.36 Aligned_cols=141 Identities=7% Similarity=0.003 Sum_probs=109.4
Q ss_pred hHHHHHHHhcCCCCCCCCCCCccccccccccccccceEEecCC-CCHHHHHHHHHhcCCccEEEeec-CccccccCCCCc
Q psy6631 395 LYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNN-MTYRDLKNLLKENRSLRVFPLVE-SSVAALLQPSLY 472 (704)
Q Consensus 395 iy~~~l~~r~~p~l~~~~~~~~~l~~~~V~diM~~~v~~v~~~-~tl~ea~~~l~~~~~~~~~PVVd-~~~~~~~~p~~~ 472 (704)
.++..+..+++..... .....+...+|+|+|+++++++.++ ++++|++++|.++ +++.+||+| ++
T Consensus 360 ~~~~~l~~rg~~~~~~--~~~~~l~~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~-~~~~lpVvd~~~---------- 426 (527)
T 3pc3_A 360 VSDNWMEARNFKEPVN--EHGHWWWSLAIAELELPAPPVILKSDATVGEAIALMKKH-RVDQLPVVDQDD---------- 426 (527)
T ss_dssp TSHHHHHHTTSSCCCC--TTCCTTTTSBGGGGCCCCCSCCEETTCBHHHHHHHHHHH-TCSEEEEECTTT----------
T ss_pred hcHHHHHhcCCccccc--cccccccCCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHc-CCCeEEEEECCC----------
Confidence 3455666666543221 2233466789999999999999999 9999999999998 899999999 55
Q ss_pred CCeeEEEeecCCCCCCCCc--ccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-----CCceEEee
Q psy6631 473 DSIILIKKLPYLPDLLPSS--SGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-----SGKFEQME 545 (704)
Q Consensus 473 ~~~~LvG~Is~~dll~~~~--~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-----~~~~~~i~ 545 (704)
++++|+|+.+|++.... ......+|+++|+++++++.+++++.|+++.|.+ .+ ++||+|+ ++.+|.++
T Consensus 427 --g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im~~~~~~v~~~~~l~~a~~~m~~-~~--~~pVVd~~~~~~g~lvGIVT 501 (527)
T 3pc3_A 427 --GSVLGVVGQETLITQIVSMNRQQSDPAIKALNKRVIRLNESEILGKLARVLEV-DP--SVLILGKNPAGKVELKALAT 501 (527)
T ss_dssp --CCEEEEEEHHHHHHHHHHHCCCTTSBGGGGEETTCCEEETTSBHHHHHHHHTT-CS--EEEEEEECSSSCEEEEEEEE
T ss_pred --CEEEEEEEHHHHHHHHHhccCcCCCcHHHHhcCCCeEECCCCcHHHHHHHHhh-CC--EEEEEeCCcccCCeEEEEEE
Confidence 78999999999974322 2345678999999999999999999999999943 33 4688876 55677777
Q ss_pred hHHHhhhc
Q psy6631 546 IKRREERQ 553 (704)
Q Consensus 546 ~~~~~~~~ 553 (704)
..|+....
T Consensus 502 ~~Dll~~l 509 (527)
T 3pc3_A 502 KLDVTTFI 509 (527)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77765433
|
| >2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A | Back alignment and structure |
|---|
Probab=99.07 E-value=6.9e-11 Score=109.27 Aligned_cols=118 Identities=12% Similarity=0.132 Sum_probs=95.8
Q ss_pred cccccc---ccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc---c
Q psy6631 420 NVYVED---FMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS---G 493 (704)
Q Consensus 420 ~~~V~d---iM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~---~ 493 (704)
+.+++| +|.+++.++.+++++.++++.|.++ +.+.+||+|++ ++++|+|+..|++..... .
T Consensus 7 ~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~-~~~~~~Vvd~~------------~~~~Givt~~dl~~~~~~~~~~ 73 (144)
T 2nyc_A 7 KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQG-RVSSVPIIDEN------------GYLINVYEAYDVLGLIKGGIYN 73 (144)
T ss_dssp GSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHH-TCSEEEEECTT------------CBEEEEEEHHHHHHHHHTC---
T ss_pred hcchhhcCCCCCCCceEECCCCcHHHHHHHHHHc-CcceeeEEcCC------------CcEEEEEcHHHHHHHhcccccc
Confidence 456888 8989999999999999999999998 79999999977 789999999999753222 2
Q ss_pred cccccccccccc------CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh
Q psy6631 494 IYNVYVEDFMVR------DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE 551 (704)
Q Consensus 494 ~~~~~V~dvM~~------~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~ 551 (704)
....+|.++|.+ ++.++++++++.++++.|. ..+...+||+|+ ++.+|.++..++..
T Consensus 74 ~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~-~~~~~~l~Vvd~~g~~~Giit~~dil~ 137 (144)
T 2nyc_A 74 DLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIR-KARVHRFFVVDDVGRLVGVLTLSDILK 137 (144)
T ss_dssp -CCSBHHHHHHHCC------CEECTTSBHHHHHHHHH-HHTCSEEEEECTTSBEEEEEEHHHHHH
T ss_pred cCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHH-HCCCCEEEEECCCCCEEEEEEHHHHHH
Confidence 346789999986 6899999999999999995 456778888875 66788888877643
|
| >3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=9.1e-11 Score=119.57 Aligned_cols=116 Identities=11% Similarity=0.173 Sum_probs=93.5
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc-------
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS------- 492 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~------- 492 (704)
..+|+|+|++++.++.+++++.++++.|.++ +++.+||+|++ ++++|+|+..|++.....
T Consensus 6 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~-~~~~lpVvd~~------------~~l~Giit~~di~~~~~~~~~~~~~ 72 (245)
T 3l2b_A 6 KLKVEDLEMDKIAPLAPEVSLKMAWNIMRDK-NLKSIPVADGN------------NHLLGMLSTSNITATYMDIWDSNIL 72 (245)
T ss_dssp CCBGGGSCCBCCCCBCTTCBHHHHHHHHHHT-TCSEEEEECTT------------CBEEEEEEHHHHHHHHHCCCCTTHH
T ss_pred cCcHHHhcCCCCcEECCCCcHHHHHHHHHHc-CCCEEEEEcCC------------CEEEEEEEHHHHHHHHHHhhhhhhh
Confidence 4679999999999999999999999999998 89999999987 789999998888632100
Q ss_pred --------------------------------------------------------------------------------
Q psy6631 493 -------------------------------------------------------------------------------- 492 (704)
Q Consensus 493 -------------------------------------------------------------------------------- 492 (704)
T Consensus 73 ~~~~~~~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~ 152 (245)
T 3l2b_A 73 AKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTP 152 (245)
T ss_dssp HHTTCCHHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCC
T ss_pred hhccCCHHHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCC
Confidence
Q ss_pred ----------------------------cccccccccccc-cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceE
Q psy6631 493 ----------------------------GIYNVYVEDFMV-RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFE 542 (704)
Q Consensus 493 ----------------------------~~~~~~V~dvM~-~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~ 542 (704)
.....+|+|+|+ +++.++++++++.|+.+.|. ..+...+||+|+ ++.+|
T Consensus 153 ~~~v~~~a~~~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~-~~~~~~~pVvd~~~~~~G 231 (245)
T 3l2b_A 153 SKEIIELAKKNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMS-ETRYSNYPVIDENNKVVG 231 (245)
T ss_dssp CHHHHHHHHHHTCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHH-HHCCSEEEEECTTCBEEE
T ss_pred CHHHHHHHHHcCCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHH-hcCCceEEEEcCCCeEEE
Confidence 011357899999 99999999999999999995 466778899975 55566
Q ss_pred EeehHHH
Q psy6631 543 QMEIKRR 549 (704)
Q Consensus 543 ~i~~~~~ 549 (704)
.++.+++
T Consensus 232 iit~~dl 238 (245)
T 3l2b_A 232 SIARFHL 238 (245)
T ss_dssp EEECC--
T ss_pred EEEHHHh
Confidence 6655553
|
| >3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-10 Score=112.90 Aligned_cols=117 Identities=12% Similarity=0.042 Sum_probs=95.4
Q ss_pred cccccccccc--cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccc
Q psy6631 419 YNVYVEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYN 496 (704)
Q Consensus 419 ~~~~V~diM~--~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~ 496 (704)
..++|+|+|+ +++.++.++++++++++.|.++ +++.+||+|++ .++++|+|+.+|++...... ..
T Consensus 34 ~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~-~~~~~pVvd~~-----------~~~lvGivt~~Dl~~~~~~~-~~ 100 (173)
T 3ocm_A 34 AERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAA-PHSFFPVCRGS-----------LDEVVGIGRAKDLVADLITE-GR 100 (173)
T ss_dssp TTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHS-SCSEEEEESSS-----------TTSEEEEEEHHHHHHHHHHH-SS
T ss_pred CCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhC-CCCEEEEEeCC-----------CCCEEEEEEHHHHHHHHhcC-Cc
Confidence 4678999997 4689999999999999999998 89999999753 15899999999997543211 24
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE 551 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~ 551 (704)
.+++ |.++++++.+++++.++++.|. ..+.+.+||+|+ ++.+|.++..++..
T Consensus 101 ~~v~--~~~~~~~v~~~~~l~~al~~m~-~~~~~~~~Vvde~g~lvGiIT~~Dil~ 153 (173)
T 3ocm_A 101 VRRN--RLRDPIIVHESIGILRLMDTLK-RSRGQLVLVADEFGAIEGLVTPIDVFE 153 (173)
T ss_dssp CCGG--GSBCCCEECGGGCHHHHHHHHH-HSTTCCEEEECTTCCEEEEECHHHHHH
T ss_pred chhH--hcCCCeEECCCCcHHHHHHHHH-HcCCeEEEEEeCCCCEEEEEeHHHHHH
Confidence 5677 5678999999999999999995 466788999875 67788888887653
|
| >2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=4.6e-10 Score=117.73 Aligned_cols=116 Identities=11% Similarity=0.140 Sum_probs=99.5
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcC----CccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccc
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENR----SLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIY 495 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~----~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~ 495 (704)
..+|+++|+++++++.+++|++++.+.++++. +++.+||||++ ++++|+|+.+|++... .
T Consensus 136 ~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~------------~~lvGivt~~dll~~~----~ 199 (286)
T 2oux_A 136 DETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE------------NHLVGVISLRDLIVND----D 199 (286)
T ss_dssp TTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT------------CBEEEEEEHHHHTTSC----T
T ss_pred hHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCC------------CeEEEEEEHHHHHcCC----C
Confidence 46799999999999999999999999999862 46789999977 7999999999997653 3
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhh
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREER 552 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~ 552 (704)
..+|+++|++++.++++++++.++++.|. ..+...+||+|+ ++.+|.++..++...
T Consensus 200 ~~~v~~im~~~~~~v~~~~~l~ea~~~m~-~~~~~~lpVVd~~g~lvGiIT~~Dil~~ 256 (286)
T 2oux_A 200 DTLIADILNERVISVHVGDDQEDVAQTIR-DYDFLAVPVTDYDDHLLGIVTVDDIIDV 256 (286)
T ss_dssp TSBHHHHSBSCCCCEETTSBHHHHHHHHH-HHTCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred CCcHHHHcCCCCeeecCCCCHHHHHHHHH-HcCCcEEEEEcCCCeEEEEEEHHHHHHH
Confidence 56899999999999999999999999995 466778899985 667888888876543
|
| >2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A | Back alignment and structure |
|---|
Probab=98.96 E-value=7.8e-10 Score=115.30 Aligned_cols=117 Identities=13% Similarity=0.186 Sum_probs=99.7
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcC----CccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccc
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENR----SLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIY 495 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~----~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~ 495 (704)
..+|+++|+++++++.++++++++++.++++. +...+||+|++ ++++|+|+.+|++... .
T Consensus 134 ~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~------------~~lvGivt~~dll~~~----~ 197 (278)
T 2yvy_A 134 EDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK------------GRLKGVLSLRDLIVAD----P 197 (278)
T ss_dssp TTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTT------------CBEEEEEEHHHHHHSC----T
T ss_pred cchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCC------------CCEEEEEEHHHHhcCC----C
Confidence 35699999999999999999999999999862 46889999977 7899999999987542 4
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhc
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQ 553 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~ 553 (704)
..+|+++|++++.++++++++.++++.|. ..+...+||+|+ ++.+|.++..++....
T Consensus 198 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~-~~~~~~lpVvd~~g~lvGivT~~Dil~~i 255 (278)
T 2yvy_A 198 RTRVAEIMNPKVVYVRTDTDQEEVARLMA-DYDFTVLPVVDEEGRLVGIVTVDDVLDVL 255 (278)
T ss_dssp TCBSTTTSBSSCCCEETTSBHHHHHHHHH-HHTCSEEEEECTTSBEEEEEEHHHHHHHC
T ss_pred CCcHHHHhCCCCeEEeCCCCHHHHHHHHH-hcCCCEEEEEeCCCeEEEEEEHHHHHHHH
Confidence 57899999999999999999999999995 456778999985 6778888888876544
|
| >2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A | Back alignment and structure |
|---|
Probab=98.85 E-value=2.5e-09 Score=119.97 Aligned_cols=117 Identities=13% Similarity=0.186 Sum_probs=99.9
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcC----CccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccc
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENR----SLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIY 495 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~----~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~ 495 (704)
..+|+++|+++++++++++|++++.+.++++. +...+||+|++ ++++|+|+.+|++... .
T Consensus 154 ~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~------------~~lvGiVt~~Dll~~~----~ 217 (473)
T 2zy9_A 154 EDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK------------GRLKGVLSLRDLIVAD----P 217 (473)
T ss_dssp TTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT------------SBEEEEEEHHHHHHSC----T
T ss_pred CCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC------------CcEEEEEEHHHHhcCC----C
Confidence 45799999999999999999999999999851 35789999977 7899999999997542 4
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhc
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQ 553 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~ 553 (704)
+.+|+++|++++.++++++++.|+++.|. ..+...+||+|+ ++.+|.++..|.....
T Consensus 218 ~~~v~dim~~~~~~v~~~~~l~ea~~~m~-~~~~~~lpVVDe~g~lvGiIT~~Dil~~i 275 (473)
T 2zy9_A 218 RTRVAEIMNPKVVYVRTDTDQEEVARLMA-DYDFTVLPVVDEEGRLVGIVTVDDVLDVL 275 (473)
T ss_dssp TSBGGGTSBSSCCCEESSSBHHHHHHHHH-HHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred CCcHHHHhCCCCeEEeCCCcHHHHHHHHH-hcCCcEEEEEcCCCEEEEEEehHhhHHHH
Confidence 56899999999999999999999999995 466778999985 6778999988875543
|
| >4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=98.85 E-value=9.2e-11 Score=112.77 Aligned_cols=134 Identities=12% Similarity=0.122 Sum_probs=93.2
Q ss_pred cccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCC
Q psy6631 495 YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPH 573 (704)
Q Consensus 495 ~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~ 573 (704)
...+|+|+|++++.++++++++.|+++.|. .++...+||+|+ ++.+|.+++++...........+.. +.+.....
T Consensus 16 ~~~~V~diM~~~v~~v~~~~tl~~a~~~m~-~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~---~~~~~~~~ 91 (170)
T 4esy_A 16 RQVPIRDILTSPVVTVREDDTLDAVAKTML-EHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEAS---EILSRAIP 91 (170)
T ss_dssp HTSBGGGGCCSCCCCEETTSBHHHHHHHHH-HTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHH---HHHTTTSC
T ss_pred cCCCHHHhcCCCCcEECCcCcHHHHHHHHH-HcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchh---hhhhhccc
Confidence 357899999999999999999999999995 577788999875 5678888888764432211110000 00000000
Q ss_pred CCCC--CCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 574 GVSA--SSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 574 ~~~~--~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.... ..... ...+..++|+ ++.+++|++++.++.+.|...+++++ ||+| +|+++|+||+
T Consensus 92 ~~~~~~~~~~~--~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~l--pVvd-~g~lvGivt~ 153 (170)
T 4esy_A 92 APEVEHLFETG--RKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRI--PVVQ-DGVPVGIVTR 153 (170)
T ss_dssp HHHHHHHHHHH--TTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEE--EEEE-TTEEEEEEEH
T ss_pred hhhHHhhhccc--cccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEE--EEEE-CCEEEEEEEH
Confidence 0000 00000 0114667888 99999999999999999999999997 9998 5999999998
|
| >3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.9e-09 Score=98.23 Aligned_cols=114 Identities=14% Similarity=0.099 Sum_probs=90.6
Q ss_pred cccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCC
Q psy6631 495 YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHG 574 (704)
Q Consensus 495 ~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~ 574 (704)
...+|+++|+++++++++++++.|+++.|.+ .+...+||+|+++.+|.+++.++.......
T Consensus 3 ~s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~-~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~------------------ 63 (128)
T 3gby_A 3 ASVTFSYLAETDYPVFTLGGSTADAARRLAA-SGCACAPVLDGERYLGMVHLSRLLEGRKGW------------------ 63 (128)
T ss_dssp TTCBGGGGCBCCSCCEETTSBHHHHHHHHHH-HTCSEEEEEETTEEEEEEEHHHHHTTCSSS------------------
T ss_pred cceEHHHhhcCCcceECCCCCHHHHHHHHHH-CCCcEEEEEECCEEEEEEEHHHHHHHHhhC------------------
Confidence 3578999999999999999999999999954 567788998886668888887754322100
Q ss_pred CCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 575 VSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
. . . ..+..++|. ++..+.|++++.++.+.|...++.++ ||||++|+++|++|+
T Consensus 64 ~-~--~-----~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l--pVvd~~g~~~Giit~ 117 (128)
T 3gby_A 64 P-T--V-----KEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVV--PLADEDGRYEGVVSR 117 (128)
T ss_dssp C-C--T-----TCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEE--EEECTTCBEEEEEEH
T ss_pred C-c--c-----cCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEE--EEECCCCCEEEEEEH
Confidence 0 0 0 013566776 77889999999999999999888876 999999999999998
|
| >3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.8e-10 Score=102.75 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=91.4
Q ss_pred cccccccccccc--CceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhcCCCcccccccCchhhc
Q psy6631 494 IYNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQRRPSRFEVTPAPDLLR 569 (704)
Q Consensus 494 ~~~~~V~dvM~~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~ 569 (704)
....+|+|+|++ ++.++++++++.|+++.|. ..+...+||+++ ++.+|.++.+++........
T Consensus 20 l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~-~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~------------ 86 (148)
T 3lv9_A 20 FEEKKIREIMVPRTDMVCIYESDSEEKILAILK-EEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN------------ 86 (148)
T ss_dssp GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHH-HSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS------------
T ss_pred cCCCCHHHccccHHHeEEECCCCCHHHHHHHHH-HCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC------------
Confidence 356789999998 9999999999999999995 466778899987 56789888888654321000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 570 GNPHGVSASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
. .+..++|.++.++.|++++.++.+.|...+.+.+ ||+|++|+++|+||+
T Consensus 87 ~----------------~~v~~~m~~~~~v~~~~~l~~~~~~m~~~~~~~l--~Vvd~~g~~~Giit~ 136 (148)
T 3lv9_A 87 K----------------IELEEILRDIIYISENLTIDKALERIRKEKLQLA--IVVDEYGGTSGVVTI 136 (148)
T ss_dssp C----------------CCGGGTCBCCEEEETTSBHHHHHHHHHHHTCSEE--EEECTTSSEEEEEEH
T ss_pred C----------------ccHHHhcCCCeEECCCCCHHHHHHHHHhcCCeEE--EEEeCCCCEEEEEEH
Confidence 0 0345556777889999999999999999888887 999999999999998
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3e-09 Score=120.35 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=99.9
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecC--ccccccCCCCcCCeeEEEeecCCCCCCCCcccccccc
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVY 498 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~--~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~ 498 (704)
+++++.|.+++.++.+++|++|+++++.++ +++++||+|+ + ++++|+|+.+|++.. ...+.+
T Consensus 113 ~~~~~~m~~d~v~l~~~~tv~ea~~~m~~~-~~s~~pVvd~g~~------------~~lvGiVt~rDl~~~---~~~~~~ 176 (511)
T 3usb_A 113 KRSESGVISDPFFLTPEHQVYDAEHLMGKY-RISGVPVVNNLDE------------RKLVGIITNRDMRFI---QDYSIK 176 (511)
T ss_dssp HTSSSCSSSSCCCBCTTSBHHHHHHHHHHH-CCSEEEEESCTTT------------CBEEEEEEHHHHTTC---CCSSSB
T ss_pred hccccccccCCEEECCCCCHHHHHHHHHHc-CCcEEEEEecCCC------------CEEEEEEEehHhhhh---ccCCCc
Confidence 457788999999999999999999999999 8999999997 5 799999999999752 345678
Q ss_pred ccccccc-CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhc
Q psy6631 499 VEDFMVR-DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQ 553 (704)
Q Consensus 499 V~dvM~~-~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~ 553 (704)
|+++|++ +++++++++++.|+.+.|. ..+.+.+||+|+ ++.+|.++.+++....
T Consensus 177 V~~vM~~~~~vtv~~~~~l~eal~~m~-~~~i~~lpVVDe~g~l~GiIT~~Dil~~~ 232 (511)
T 3usb_A 177 ISDVMTKEQLITAPVGTTLSEAEKILQ-KYKIEKLPLVDNNGVLQGLITIKDIEKVI 232 (511)
T ss_dssp HHHHCCCCCCCCEETTCCHHHHHHHHH-HHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred HHHhcccCCCEEECCCCCHHHHHHHHH-HcCCCEEEEEeCCCCEeeeccHHHHHHhh
Confidence 9999998 9999999999999999995 567788999985 5668888888775543
|
| >3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.80 E-value=2e-09 Score=103.83 Aligned_cols=112 Identities=11% Similarity=0.011 Sum_probs=89.6
Q ss_pred cccccccccc--cCceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhcCCCcccccccCchhhcC
Q psy6631 495 YNVYVEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRG 570 (704)
Q Consensus 495 ~~~~V~dvM~--~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~ 570 (704)
...+|+|+|+ +++.++++++++.|+++.|. ..+...+||+++ ++.+|.++++++........
T Consensus 40 ~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~-~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~------------- 105 (172)
T 3lhh_A 40 DERTISSLMVPRSDIVFLDLNLPLDANLRTVM-QSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGE------------- 105 (172)
T ss_dssp ---CTTTTSEEGGGCCCEETTSCHHHHHHHHH-TCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTC-------------
T ss_pred CCCCHHHhCccHHHeEEEcCCCCHHHHHHHHH-hCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcC-------------
Confidence 4568999999 78899999999999999995 567788999986 56788888888654321100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 571 NPHGVSASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..++|.++.++.|++++.++...|...+.+.+ ||||++|+++|+||+
T Consensus 106 ---------------~~~v~~im~~~~~v~~~~~l~~a~~~m~~~~~~~~--pVvd~~g~lvGiit~ 155 (172)
T 3lhh_A 106 ---------------RLELVDLVKNCNFVPNSLSGMELLEHFRTTGSQMV--FVVDEYGDLKGLVTL 155 (172)
T ss_dssp ---------------CCCGGGGCBCCEEEETTCCHHHHHHHHHHHTCSEE--EEECTTSCEEEEEEH
T ss_pred ---------------cccHHHHhcCCeEeCCCCCHHHHHHHHHHcCCeEE--EEEeCCCCEEEEeeH
Confidence 01355666778889999999999999999888876 999999999999999
|
| >3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.79 E-value=9.9e-10 Score=100.51 Aligned_cols=111 Identities=13% Similarity=0.004 Sum_probs=86.4
Q ss_pred cccccccccc--cCceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhcCCCcccccccCchhhcC
Q psy6631 495 YNVYVEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRG 570 (704)
Q Consensus 495 ~~~~V~dvM~--~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~ 570 (704)
.+.+|+|+|+ +++.++++++++.|+++.|.+ .+...+||+++ ++.+|.++.+++......
T Consensus 3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~-~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~--------------- 66 (129)
T 3jtf_A 3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIE-TAHSRFPVYEDDRDNIIGILLAKDLLRYMLE--------------- 66 (129)
T ss_dssp -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHH-SCCSEEEEESSSTTCEEEEEEGGGGGGGGTC---------------
T ss_pred CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHH-cCCCEEEEEcCCCCcEEEEEEHHHHHhHhcc---------------
Confidence 3568999999 778999999999999999954 66778899886 466777777664332210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 571 NPHGVSASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
. ..+..++|.++.++.|++++.++.+.|...+.+.+ ||+|++|+++|++|+
T Consensus 67 ---~-----------~~~v~~~m~~~~~v~~~~~l~~~~~~m~~~~~~~~--pVvd~~g~~~Giit~ 117 (129)
T 3jtf_A 67 ---P-----------ALDIRSLVRPAVFIPEVKRLNVLLREFRASRNHLA--IVIDEHGGISGLVTM 117 (129)
T ss_dssp ---T-----------TSCGGGGCBCCCEEETTCBHHHHHHHHHTSSCCEE--EEECC-CCEEEEEEH
T ss_pred ---C-----------CcCHHHHhCCCeEeCCCCcHHHHHHHHHhcCCeEE--EEEeCCCCEEEEEEH
Confidence 0 01345566677888999999999999999888876 999999999999999
|
| >3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-09 Score=100.01 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=87.6
Q ss_pred cccccccc--cCceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhcCCCcccccccCchhhcCCC
Q psy6631 497 VYVEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNP 572 (704)
Q Consensus 497 ~~V~dvM~--~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~ 572 (704)
.+|+|+|+ +++.++++++++.|+++.|. ..+...+||+++ ++.+|.++++++...........
T Consensus 2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~-~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~~~------------ 68 (130)
T 3hf7_A 2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLT-HSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFT------------ 68 (130)
T ss_dssp CBHHHHSEEGGGCCEEETTSCHHHHHHHHH-TCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSCCC------------
T ss_pred cCHHHhCccHHHEEEEcCCCCHHHHHHHHH-HCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCccc------------
Confidence 47899997 46899999999999999995 577788999864 56789888888755432211000
Q ss_pred CCCCCCCCCCCCCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 573 HGVSASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.....++|.++.++.|++++.++...|...+.+.+ ||+|++|+++|++|+
T Consensus 69 -------------~~~v~~~m~~~~~v~~~~~l~~~~~~m~~~~~~~~--~Vvd~~g~lvGiit~ 118 (130)
T 3hf7_A 69 -------------KEIMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVG--LVVDEYGDIQGLVTV 118 (130)
T ss_dssp -------------HHHHHHHSBCCCEEETTCBHHHHHHHHHHHCCCEE--EEECTTSCEEEEEEH
T ss_pred -------------hhhHHHhccCCeEeCCCCcHHHHHHHHHhcCCeEE--EEEcCCCCEEEEeeH
Confidence 00233455667788999999999999999888776 999999999999998
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.5e-09 Score=122.36 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=85.8
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccc
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVE 500 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~ 500 (704)
.+++++|.++++++++++|++|+++++.++ +++++||+|++ ++++|+|+.+|++... ..+.+|+
T Consensus 89 k~~~~~m~~d~v~v~~~~tv~ea~~~m~~~-~~s~~PVvd~~------------~~lvGiVt~rDL~~~~---~~~~~v~ 152 (496)
T 4fxs_A 89 KIFEAGVVTHPVTVRPEQTIADVMELTHYH-GFAGFPVVTEN------------NELVGIITGRDVRFVT---DLTKSVA 152 (496)
T ss_dssp HHCCC--CBCCCCBCSSSBHHHHHHHHTSS-CCCEEEEECSS------------SBEEEEEEHHHHTTCC---CTTSBGG
T ss_pred cccccccccCceEECCCCCHHHHHHHHHHc-CCcEEEEEccC------------CEEEEEEEHHHHhhcc---cCCCcHH
Confidence 357889999999999999999999999998 89999999977 7999999999997432 3567899
Q ss_pred cccc-c-CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 501 DFMV-R-DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 501 dvM~-~-~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
|+|+ + ++.++.+++++.|+.+.| ..++++.+||+|+ ++.+|.++.+++.
T Consensus 153 diM~p~~~~vtv~~~~~l~ea~~~m-~~~~i~~lpVVDe~G~l~GiIT~~DIl 204 (496)
T 4fxs_A 153 AVMTPKERLATVKEGATGAEVQEKM-HKARVEKILVVNDEFQLKGMITAKDFH 204 (496)
T ss_dssp GTSEEGGGCCEEECC----CGGGTC-C---CCCEEEECTTSBCCEEECCC---
T ss_pred HHhcCCCCCEEECCCCCHHHHHHHH-HHcCCCEEEEEcCCCCEEEeehHhHHH
Confidence 9999 5 599999999999999999 5678888999986 4556666655544
|
| >3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.1e-09 Score=96.76 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=86.3
Q ss_pred ccccccccccC--ceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhcCCCcccccccCchhhcCC
Q psy6631 496 NVYVEDFMVRD--VKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGN 571 (704)
Q Consensus 496 ~~~V~dvM~~~--v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~ 571 (704)
+.+|+|+|+++ +.++++++++.|+++.|.+ .+...+||+++ ++.+|.++++++...... .+
T Consensus 2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~-~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~--------------~~ 66 (127)
T 3nqr_A 2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIE-SAHSRFPVISEDKDHIEGILMAKDLLPFMRS--------------DA 66 (127)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHH-HCCSEEEEESSSTTCEEEEEEGGGGGGGGST--------------TC
T ss_pred CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHh-CCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc--------------cC
Confidence 45789999954 9999999999999999954 55667888876 466787777765432210 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 572 PHGVSASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
. +.+..++|.++.++.|++++.++...|...+.+.+ ||+|++|+++|++|+
T Consensus 67 --------~-----~~~v~~~m~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVvd~~g~~~Giit~ 117 (127)
T 3nqr_A 67 --------E-----AFSMDKVLRTAVVVPESKRVDRMLKEFRSQRYHMA--IVIDEFGGVSGLVTI 117 (127)
T ss_dssp --------C-----CCCHHHHCBCCCEEETTCBHHHHHHHHHHTTCCEE--EEECTTSCEEEEEEH
T ss_pred --------C-----CCCHHHHcCCCeEECCCCcHHHHHHHHHhcCCeEE--EEEeCCCCEEEEEEH
Confidence 0 01345666767789999999999999999888887 999999999999998
|
| >2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=3.4e-09 Score=96.79 Aligned_cols=113 Identities=12% Similarity=0.133 Sum_probs=89.5
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCC
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGV 575 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~ 575 (704)
..+|+|+|++++.++.+++++.|+.+.|.+ .+...+||+|+++.+|.++..++........ .
T Consensus 3 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~-~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~~----------------~- 64 (133)
T 2ef7_A 3 EEIVKEYMKTQVISVTKDAKLNDIAKVMTE-KNIGSVIVVDGNKPVGIITERDIVKAIGKGK----------------S- 64 (133)
T ss_dssp CCBGGGTSBCSCCEEETTCBHHHHHHHHHH-HTCSEEEEEETTEEEEEEEHHHHHHHHHTTC----------------C-
T ss_pred cccHHHhccCCCEEECCCCcHHHHHHHHHh-cCCCEEEEEECCEEEEEEcHHHHHHHHhcCC----------------C-
Confidence 468999999999999999999999999954 4566788888666788888887654321100 0
Q ss_pred CCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 576 SASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
. ..+..++|. ++..+.|++++.++...|...+.+++ ||+|++|+++|++|+
T Consensus 65 ----~-----~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l--~Vvd~~g~~~Giit~ 116 (133)
T 2ef7_A 65 ----L-----ETKAEEFMTASLITIREDSPITGALALMRQFNIRHL--PVVDDKGNLKGIISI 116 (133)
T ss_dssp ----T-----TCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEE--EEECTTSCEEEEEEH
T ss_pred ----c-----ccCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEE--EEECCCCeEEEEEEH
Confidence 0 013556675 78889999999999999998888877 999999999999999
|
| >3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.1e-09 Score=97.34 Aligned_cols=113 Identities=14% Similarity=0.113 Sum_probs=87.9
Q ss_pred ccccccccc--cCceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhcCCCcccccccCchhhcCC
Q psy6631 496 NVYVEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGN 571 (704)
Q Consensus 496 ~~~V~dvM~--~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~ 571 (704)
+.+|+|+|+ +++.++++++++.|+++.|.+ .+...+||+++ ++.+|.++.+++....... .
T Consensus 2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~-~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~-------------~- 66 (136)
T 3lfr_A 2 DLQVRDIMVPRSQMISIKATQTPREFLPAVID-AAHSRYPVIGESHDDVLGVLLAKDLLPLILKA-------------D- 66 (136)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHH-HCCSEEEEESSSTTCEEEEEEGGGGGGGGGSS-------------S-
T ss_pred CCChHhccccHHHEEEEcCCCCHHHHHHHHHh-CCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhc-------------c-
Confidence 457999999 678999999999999999954 56678888886 4667877777754322100 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 572 PHGVSASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
. ...+..++|.++.++.|++++.++...|...+.+.+ ||+|++|+++|+||+
T Consensus 67 --~----------~~~~v~~~m~~~~~v~~~~~l~~~~~~m~~~~~~~~--~Vvd~~g~lvGiit~ 118 (136)
T 3lfr_A 67 --G----------DSDDVKKLLRPATFVPESKRLNVLLREFRANHNHMA--IVIDEYGGVAGLVTI 118 (136)
T ss_dssp --G----------GGCCGGGTCBCCCEEETTCBHHHHHHHHHHHTCCEE--EEECTTSCEEEEEEH
T ss_pred --C----------CCcCHHHHcCCCeEECCCCcHHHHHHHHHhcCCeEE--EEEeCCCCEEEEEEH
Confidence 0 001355667778889999999999999999888877 999999999999998
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.4e-09 Score=122.64 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=3.0
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccc
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVE 500 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~ 500 (704)
.+++|+|++++.++.++++++|+++.|.++ +++.+||+|++ ++++|+|+.+|++... ..+.+|+
T Consensus 95 ~~~~~iM~~~~~~v~~~~tv~ea~~~m~~~-~~~~~pVvd~~------------~~lvGivt~~Dl~~~~---~~~~~v~ 158 (494)
T 1vrd_A 95 KKTENGIIYDPITVTPDMTVKEAIDLMAEY-KIGGLPVVDEE------------GRLVGLLTNRDVRFEK---NLSKKIK 158 (494)
T ss_dssp HTC-----------------------------------------------------------------------------
T ss_pred hhHhhcCccCCeEECCCCCHHHHHHHHHHc-CceEEEEEcCC------------CEEEEEEEHHHHHhhc---CCCCcHH
Confidence 357899999999999999999999999988 89999999976 7899999999997532 3467899
Q ss_pred ccccc--CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh
Q psy6631 501 DFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE 551 (704)
Q Consensus 501 dvM~~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~ 551 (704)
++|++ ++.++++++++.|+++.|. ..++..+||+|+ ++.+|.++..++..
T Consensus 159 ~im~~~~~~~~v~~~~~l~ea~~~m~-~~~~~~lpVVd~~g~lvGiIt~~Dll~ 211 (494)
T 1vrd_A 159 DLMTPREKLIVAPPDISLEKAKEILH-QHRIEKLPLVSKDNKLVGLITIKDIMS 211 (494)
T ss_dssp ---------------------------------------------------CHH
T ss_pred HHhCCCCCCeEECCCCCHHHHHHHHH-HcCCcEEEEEcCCCeEEEEEEHHHHHh
Confidence 99998 9999999999999999994 567778888875 45556555555433
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.3e-09 Score=120.80 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=3.5
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccc
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVE 500 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~ 500 (704)
.+++++|.+++.++++++|++|+++++.++ +++.+||+| + ++++|+|+.+|+... ...+.+|+
T Consensus 88 k~~~~~m~~~~v~v~~~~tv~ea~~~m~~~-~~s~~pVvd-~------------g~lvGIVt~rDl~~~---~~~~~~V~ 150 (490)
T 4avf_A 88 KKHETAIVRDPVTVTPSTKIIELLQMAREY-GFSGFPVVE-Q------------GELVGIVTGRDLRVK---PNAGDTVA 150 (490)
T ss_dssp HHCCC---------------------------------------------------------------------------
T ss_pred cccccCcccCceEeCCCCcHHHHHHHHHHh-CCCEEEEEE-C------------CEEEEEEEhHHhhhc---cccCCcHH
Confidence 357899999999999999999999999998 899999999 5 689999999999643 23567899
Q ss_pred cccc-c-CceEEeCCCCHHHHHHHhHhcCCCceeecccCC-CceEEeehHHH
Q psy6631 501 DFMV-R-DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS-GKFEQMEIKRR 549 (704)
Q Consensus 501 dvM~-~-~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~-~~~~~i~~~~~ 549 (704)
++|+ + ++.++.+++++.|+.++| ..++++.+||+|++ +.+|.++.+++
T Consensus 151 ~vMtp~~~~vtv~~~~~l~ea~~~m-~~~~i~~lpVVDe~g~lvGiIT~~Di 201 (490)
T 4avf_A 151 AIMTPKDKLVTAREGTPLEEMKAKL-YENRIEKMLVVDENFYLRGLVTFRDI 201 (490)
T ss_dssp ----------------------------------------------------
T ss_pred HHhccCCCCEEECCCCcHHHHHHHH-HHcCCCEEEEEcCCCcEEEEEehHHh
Confidence 9999 5 699999999999999999 46778889999863 44444444443
|
| >4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.9e-09 Score=99.01 Aligned_cols=128 Identities=13% Similarity=0.144 Sum_probs=92.3
Q ss_pred ccccccccccc--CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCC
Q psy6631 495 YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGN 571 (704)
Q Consensus 495 ~~~~V~dvM~~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~ 571 (704)
...+|+|+|++ +++++.+++++.|+.+.|. ..+...+||+|+ ++.+|.+++.++.............. .++..
T Consensus 3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~-~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~---~~~~~ 78 (152)
T 4gqw_A 3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLV-ENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFN---AVQKL 78 (152)
T ss_dssp CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHH-HTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHH---HHHTC
T ss_pred ceEEhhhccCCCCCCeEECCCCcHHHHHHHHH-HcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchH---HHHHH
Confidence 34689999998 8999999999999999995 466788999986 56789888888754332111111111 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 572 PHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
. ... ...+..++|. ++..+.|++++.++...|...+++.+ ||||++|+++|+||+
T Consensus 79 ~-------~~~--~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l--~Vvd~~g~~~Giit~ 134 (152)
T 4gqw_A 79 L-------SKT--NGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRL--PVVDSDGKLVGIITR 134 (152)
T ss_dssp --------------CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEE--EEECTTSBEEEEEEH
T ss_pred H-------HHh--ccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEE--EEECCCCcEEEEEEH
Confidence 0 000 0114566777 68889999999999999999998887 999999999999998
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.5e-09 Score=121.18 Aligned_cols=167 Identities=11% Similarity=0.085 Sum_probs=85.4
Q ss_pred HHHHHHHHHhCCchhHHHHHHH-------HHHHHHHHhh-----cCC--ChHHHHHHHhcCCCCCCCCCCCccccccccc
Q psy6631 359 SVSVIMFEMTGQITHIIPVMIA-------VLISNAVAAL-----LQP--SLYDSIILIKKLPYLPDLLPSSSGIYNVYVE 424 (704)
Q Consensus 359 s~~viv~ElTG~~~~~lPimia-------~~is~~va~~-----l~~--siy~~~l~~r~~p~l~~~~~~~~~l~~~~V~ 424 (704)
+.+.|.+|||+++.+.+|+|.+ .-++..++.. ++. +.-+..-..+ .-.+++
T Consensus 47 ~~v~l~~eLt~~~~~~iP~vsa~md~~t~~~la~~ia~~gg~gii~~~~t~e~~~~~v~---------------~v~~~~ 111 (514)
T 1jcn_A 47 DEVDLTSALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIGFIHHNCTPEFQANEVR---------------KVKNFE 111 (514)
T ss_dssp GGCBCCEESSSSCEESSCEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHHHHHH---------------HHHTCC
T ss_pred ceeEEEeeccCCeeEeceEEEEehhhhhhhhHHHHHHhcCCeeEEecCCCHHHHHHHHH---------------hhhhhh
Confidence 4466778999999888898876 3344444432 111 1111111111 113688
Q ss_pred cccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccc
Q psy6631 425 DFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMV 504 (704)
Q Consensus 425 diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~ 504 (704)
|+|.+++.++.++++++|++++|.++ +++.+||+|++. .+++++|+|+.+|+.... ......+|+++|+
T Consensus 112 ~im~~~~~~v~~~~tv~ea~~~m~~~-~~~~~pVvd~~~---------~~~~lvGiVt~~Dl~~~~-~~~~~~~v~~vm~ 180 (514)
T 1jcn_A 112 QGFITDPVVLSPSHTVGDVLEAKMRH-GFSGIPITETGT---------MGSKLVGIVTSRDIDFLA-EKDHTTLLSEVMT 180 (514)
T ss_dssp TTSCSSCCCCCC------------------CEESCC-----------------CCEECTTTTC-----------------
T ss_pred hccccCCEEECCCCCHHHHHHHHHhc-CCCEEEEEeCCC---------cCCEEEEEEEHHHHHhhh-hccCCCCHHHHhC
Confidence 99999999999999999999999988 899999998720 027899999999997542 1235678999999
Q ss_pred c--CceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCccccccc
Q psy6631 505 R--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTP 563 (704)
Q Consensus 505 ~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~ 563 (704)
+ +++++++++++.|+.+.|.+ .+...+||+|+++. ++|.++|.+++.
T Consensus 181 ~~~~~~tv~~~~~l~ea~~~m~~-~~~~~lpVVd~~g~-----------lvGiIt~~Dll~ 229 (514)
T 1jcn_A 181 PRIELVVAPAGVTLKEANEILQR-SKKGKLPIVNDCDE-----------LVAIIARTDLKK 229 (514)
T ss_dssp CCBCCCCEETTCCSTTTTTHHHH-HTCSCCCEESSSSC-----------CC----CCCCSS
T ss_pred CCCCCeEECCCCCHHHHHHHHHH-cCCCcccEECCCCe-----------EEEEEEHHHHHH
Confidence 8 99999999999999999964 45556777775332 445555555555
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.4e-08 Score=112.47 Aligned_cols=115 Identities=16% Similarity=0.186 Sum_probs=99.2
Q ss_pred ccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeec--CccccccCCCCcCCeeEEEeecCCCCCCCCccccccccc
Q psy6631 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE--SSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYV 499 (704)
Q Consensus 422 ~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd--~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V 499 (704)
+++|+|.+++.++.++++++++++.+.++ +++.+||+| ++ ++++|+|+.+|++... ..+.+|
T Consensus 91 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~-~~~~~pVvd~~~~------------~~lvGivt~~Dl~~~~---~~~~~v 154 (491)
T 1zfj_A 91 RSENGVIIDPFFLTPEHKVSEAEELMQRY-RISGVPIVETLAN------------RKLVGIITNRDMRFIS---DYNAPI 154 (491)
T ss_dssp HHTTTTSSSCCCBCSSSBHHHHHHHHHHT-TCSEEEEESCTTT------------CBEEEEEEHHHHHHCS---CSSSBT
T ss_pred hHHhcCcCCCeEECCCCcHHHHHHHHHHc-CCCEEEEEEeCCC------------CEEEEEEEHHHHhhhc---cCCCcH
Confidence 46889999999999999999999999998 899999998 55 7899999999997542 246789
Q ss_pred cccccc-CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhc
Q psy6631 500 EDFMVR-DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQ 553 (704)
Q Consensus 500 ~dvM~~-~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~ 553 (704)
+++|++ ++.++++++++.|+++.|. ..+...+||+|+ ++.+|.++..++....
T Consensus 155 ~~im~~~~~~~v~~~~~l~~a~~~m~-~~~~~~lpVVd~~g~lvGivt~~Dil~~~ 209 (491)
T 1zfj_A 155 SEHMTSEHLVTAAVGTDLETAERILH-EHRIEKLPLVDNSGRLSGLITIKDIEKVI 209 (491)
T ss_dssp TTSCCCSCCCCEETTCCHHHHHHHHH-HTTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred HHHcCCCCCEEECCCCCHHHHHHHHH-HcCCCEEEEEcCCCcEEEEEEHHHHHHHH
Confidence 999998 8999999999999999995 577888999985 5678888888876544
|
| >3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.65 E-value=6e-09 Score=95.24 Aligned_cols=113 Identities=15% Similarity=0.061 Sum_probs=85.6
Q ss_pred ccccccccccc--CceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhcCCCcccccccCchhhcC
Q psy6631 495 YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRG 570 (704)
Q Consensus 495 ~~~~V~dvM~~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~ 570 (704)
...+|+|+|++ ++.++++++++.|+++.|. ..+...+||+++ ++.+|.++.+++........
T Consensus 4 ~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~-~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~------------- 69 (130)
T 3i8n_A 4 QDVPVTQVMTPRPVVFRVDATMTINEFLDKHK-DTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGS------------- 69 (130)
T ss_dssp ---CCTTTSCCBCCCCEEETTSBHHHHHHHTT-TCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTT-------------
T ss_pred CcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHH-hCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCC-------------
Confidence 45789999994 5678999999999999994 456677888875 46688888777654321100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 571 NPHGVSASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+ ..+..++|.++.++.|++++.++...|...+.+.+ ||+|++|+++|++|+
T Consensus 70 ------------~--~~~v~~~m~~~~~v~~~~~l~~~~~~m~~~~~~~~--~Vvd~~g~~vGivt~ 120 (130)
T 3i8n_A 70 ------------G--QKQLGAVMRPIQVVLNNTALPKVFDQMMTHRLQLA--LVVDEYGTVLGLVTL 120 (130)
T ss_dssp ------------T--TSBHHHHSEECCEEETTSCHHHHHHHHHHHTCCEE--EEECTTSCEEEEEEH
T ss_pred ------------C--cCCHHHHhcCCcCcCCCCcHHHHHHHHHHcCCeEE--EEEcCCCCEEEEEEH
Confidence 0 01344566667789999999999999999888887 999999999999998
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=3.2e-09 Score=118.25 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=1.5
Q ss_pred cccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccc
Q psy6631 423 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDF 502 (704)
Q Consensus 423 V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dv 502 (704)
-++.|..+++++.|+.|+.|+.+++.++ +++++||+|+. ..+++|+|+|+.+|+... ..+.+|+++
T Consensus 140 ~e~g~i~dPvtl~P~~Tv~da~~l~~~~-~isgvpVvd~g---------~~~~kLvGIvT~RD~rf~----d~~~~V~ev 205 (556)
T 4af0_A 140 YENGFITDPLCLGPDATVGDVLEIKAKF-GFCGVPITETG---------EPDSKLLGIVTGRDVQFQ----DAETPIKSV 205 (556)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred cccCccCCCeEcCCCCCHHHHHHHHHHh-CCCcccccccc---------CcCCEEEEEEeccccccc----ccceEhhhh
Confidence 4556888999999999999999999998 89999999874 123799999999998652 346789999
Q ss_pred cccCceEEeCCCCHHHHHHHhHhcCCCceeecccCC-CceEEeehHH
Q psy6631 503 MVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS-GKFEQMEIKR 548 (704)
Q Consensus 503 M~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~-~~~~~i~~~~ 548 (704)
|+++++++.++.+++|+.++| ...++..+||+|++ +.++.++.+|
T Consensus 206 MT~~lvt~~~~~~leeA~~iL-~~~kieklpVVd~~g~LvGlIT~kD 251 (556)
T 4af0_A 206 MTTEVVTGSSPITLEKANSLL-RETKKGKLPIVDSNGHLVSLVARSD 251 (556)
T ss_dssp -----------------------------------------------
T ss_pred cccceEEecCCCCHHHHHHHH-HHccccceeEEccCCcEEEEEEech
Confidence 999999999999999999999 56788889999864 3344333333
|
| >3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-08 Score=96.78 Aligned_cols=115 Identities=13% Similarity=0.119 Sum_probs=86.9
Q ss_pred cccccccc--cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCC
Q psy6631 497 VYVEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPH 573 (704)
Q Consensus 497 ~~V~dvM~--~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~ 573 (704)
..++++|+ +++.++.+++++.||.+.| ...+...+||+|+ ++.+|.++.++.......... . .+.+.
T Consensus 15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m-~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~----~-~~~~~---- 84 (156)
T 3k6e_A 15 GQEETFLTPAKNLAVLIDTHNADHATLLL-SQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDL----S-QEIMA---- 84 (156)
T ss_dssp TTGGGGEEETTSSCCEETTSBHHHHHHHH-TTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTC----C-HHHHT----
T ss_pred ccHHHhCcchhHeEEECCcCCHHHHHHHH-HHcCCcEEEEEcCCCcEEEEEEecchhhhhhhccc----c-ccccc----
Confidence 57889998 4799999999999999999 4577778899876 567899998886543211000 0 00000
Q ss_pred CCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 574 GVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..++|+ ++.++.|++++.++...|...++ +||||++|+++|+||+
T Consensus 85 ------------~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~----lpVVd~~g~l~GiiT~ 133 (156)
T 3k6e_A 85 ------------DTDIVHMTKTDVAVVSPDFTITEVLHKLVDESF----LPVVDAEGIFQGIITR 133 (156)
T ss_dssp ------------TSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSSE----EEEECTTSBEEEEEEH
T ss_pred ------------ccCHHHhhcCCceecccccHHHHHHHHHHHcCC----eEEEecCCEEEEEEEH
Confidence 114567777 88899999999999999876554 4999999999999999
|
| >3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=8.3e-09 Score=92.62 Aligned_cols=108 Identities=14% Similarity=0.175 Sum_probs=85.7
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCC
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVS 576 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~ 576 (704)
+|+|+|++++.++++++++.|+++.|.+ .+...+||+++ ++.+|.++..++........
T Consensus 2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~-~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~------------------- 61 (122)
T 3kpb_A 2 LVKDILSKPPITAHSNISIMEAAKILIK-HNINHLPIVDEHGKLVGIITSWDIAKALAQNK------------------- 61 (122)
T ss_dssp BHHHHCCSCCCCEETTSBHHHHHHHHHH-HTCSCEEEECTTSBEEEEECHHHHHHHHHTTC-------------------
T ss_pred chHHhhCCCCEEeCCCCcHHHHHHHHHH-cCCCeEEEECCCCCEEEEEEHHHHHHHHHhcc-------------------
Confidence 6899999999999999999999999964 56677888874 66688888777654321100
Q ss_pred CCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 577 ASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.+..++|. ++..+.|++++.++...|...+.+.+ ||+|++|+++|++|+
T Consensus 62 ----------~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l--~Vvd~~g~~~Givt~ 111 (122)
T 3kpb_A 62 ----------KTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGV--PVVDDYRRVVGIVTS 111 (122)
T ss_dssp ----------CBGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEE--EEECTTCBEEEEEEH
T ss_pred ----------cCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeE--EEECCCCCEEEEEeH
Confidence 02344454 67788999999999999998888887 999999999999998
|
| >1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ... | Back alignment and structure |
|---|
Probab=98.62 E-value=9.1e-07 Score=98.98 Aligned_cols=185 Identities=15% Similarity=0.105 Sum_probs=127.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh--hcchh----HHHHHHHHHHHHHH---hhhhhccccC
Q psy6631 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFL--QKNRF----LYPGIVVLLATSVS---FPLGLGKYMA 233 (704)
Q Consensus 163 ~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l--~~~~~----l~p~l~gllvg~l~---fP~~~G~~~~ 233 (704)
..-+...+++|+++|+++.+|.++..+...++... ..... ..++| +.+++++++++.+. .|..-|.+
T Consensus 33 ~~~~~~~~liGv~~Gl~~~~f~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~p~a~GsG-- 108 (465)
T 1ots_A 33 LAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGA--LVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSG-- 108 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhccccccHHHHHHHHHHHHHHHHHHHHHHhCccccCCC--
Confidence 45677789999999999999999988876554321 11110 01122 33444455555442 35544432
Q ss_pred CCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHH
Q psy6631 234 GDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFG 313 (704)
Q Consensus 234 g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G 313 (704)
.+++...+++.. .... .-....|++.+.+|.++|.+.|---|+.-+||++|
T Consensus 109 -----ip~v~~~l~~~~--------------------~~~~----~r~~~~k~~~~~lti~sG~s~GrEGP~vqiGa~ig 159 (465)
T 1ots_A 109 -----IPEIEGALEDQR--------------------PVRW----WRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159 (465)
T ss_dssp -----HHHHHHHHTTCS--------------------CCCH----HHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHH
T ss_pred -----hHHHHHHHhCCC--------------------CCCc----HHHHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHH
Confidence 345544443210 0011 12357899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHh-CCch--h--HHHHHHHHHHHHHH
Q psy6631 314 RMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMT-GQIT--H--IIPVMIAVLISNAV 387 (704)
Q Consensus 314 ~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElT-G~~~--~--~lPimia~~is~~v 387 (704)
..++..+.. .+ ..+--.+...||||=+|++.+ |++.++..+|.. ++++ . ++|.++++++|+.+
T Consensus 160 ~~l~~~~~l-~~----------~~~~r~li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v 228 (465)
T 1ots_A 160 RMVLDIFRL-KG----------DEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIM 228 (465)
T ss_dssp HHHHHHTTC-CS----------HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc-CC----------HHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 999987531 00 123457888999999999988 899999999865 4444 4 88999999999999
Q ss_pred Hhhc
Q psy6631 388 AALL 391 (704)
Q Consensus 388 a~~l 391 (704)
++.+
T Consensus 229 ~~~~ 232 (465)
T 1ots_A 229 YRIF 232 (465)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
|
| >3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-08 Score=100.15 Aligned_cols=109 Identities=6% Similarity=0.040 Sum_probs=88.2
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhc--CCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCC
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKEN--RSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNP 572 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~--~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~ 572 (704)
..+|+++|++++.++++++++.++++.|.+. ++...++|+++ ++.+|.++.+++... .+
T Consensus 53 ~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~------------------~~ 114 (205)
T 3kxr_A 53 ENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH------------------EP 114 (205)
T ss_dssp TTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTS------------------CT
T ss_pred cchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhC------------------CC
Confidence 4589999999999999999999999999652 26778888885 566887777764210 00
Q ss_pred CCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 573 HGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+.+..++|. ++.++.|++++.++.+.|...++..+ ||||++|+++|+||+
T Consensus 115 -------------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVVD~~g~lvGiIT~ 165 (205)
T 3kxr_A 115 -------------HEPLISLLSEDSRALTANTTLLDAAEAIEHSREIEL--PVIDDAGELIGRVTL 165 (205)
T ss_dssp -------------TSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEE--EEECTTSBEEEEEEH
T ss_pred -------------cchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEE--EEEcCCCeEEEEEEH
Confidence 013567776 78899999999999999999888877 999999999999999
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=3.5e-09 Score=119.70 Aligned_cols=120 Identities=9% Similarity=0.089 Sum_probs=3.9
Q ss_pred ccccccc-cccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccc
Q psy6631 420 NVYVEDF-MVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVY 498 (704)
Q Consensus 420 ~~~V~di-M~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~ 498 (704)
.++..++ |++++.++.+++|++|+++++.++ +++.+||+|++. ..++++|+|+.+|++.. ....+.+
T Consensus 95 ~V~~~e~gM~~~~~~v~~~~tv~eal~~m~~~-~~s~~pVvd~~~---------~~g~lvGiVt~~Dl~~~--~~~~~~~ 162 (503)
T 1me8_A 95 AVKNFKAGFVVSDSNVKPDQTFADVLAISQRT-THNTVAVTDDGT---------PHGVLLGLVTQRDYPID--LTQTETK 162 (503)
T ss_dssp HHHTTTC-------------------------------------------------------------------------
T ss_pred hhhhcccCcccCCeEECCCCcHHHHHHHHHHc-CceEEEEEECCC---------cCCeEEEEEEHHHHHhh--hccccCc
Confidence 4455666 999999999999999999999998 899999998530 01589999999999753 3345678
Q ss_pred cccccccC--ceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCccccccc
Q psy6631 499 VEDFMVRD--VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTP 563 (704)
Q Consensus 499 V~dvM~~~--v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~ 563 (704)
|+|+|+++ +.++++++++.|+++.| ..++...+||+|+++. ++|.+++.+++.
T Consensus 163 V~diM~~~~~~~tv~~~~sl~ea~~~m-~~~~i~~lpVVDe~g~-----------lvGiIT~~Dil~ 217 (503)
T 1me8_A 163 VSDMMTPFSKLVTAHQDTKLSEANKII-WEKKLNALPIIDDDQH-----------LRYIVFRKDYDR 217 (503)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHhCCCCCCEEEcCCCcHHHHHHHH-HHcCCCEEEEEcCCCe-----------EEEEEEecHHHH
Confidence 99999988 99999999999999999 4577888899986432 445555555555
|
| >3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.62 E-value=8.4e-09 Score=97.62 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=87.4
Q ss_pred ccccccccccc--CceEEeCCCCHHHHHHHhHhcCCCceeecccCC--CceEEeehHHHhhhcCCCcccccccCchhhcC
Q psy6631 495 YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS--GKFEQMEIKRREERQRRPSRFEVTPAPDLLRG 570 (704)
Q Consensus 495 ~~~~V~dvM~~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~--~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~ 570 (704)
...+|+|+|++ ++.++++++++.|+++.|.+ .+...+||++++ +.+|.++.+++....... .
T Consensus 36 ~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~-~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~------~------- 101 (156)
T 3oi8_A 36 SDLEVRDAMITRSRMNVLKENDSIERITAYVID-TAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP------E------- 101 (156)
T ss_dssp TTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHH-HCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG------G-------
T ss_pred CCCCHhheeeeHHHeEEECCCCCHHHHHHHHHH-CCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC------C-------
Confidence 34689999997 79999999999999999954 556788888763 567877777654322110 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 571 NPHGVSASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..++|.++.++.|++++.++...|...+.+.+ ||||++|+++|+||+
T Consensus 102 ---------------~~~v~~im~~~~~v~~~~~l~~a~~~m~~~~~~~~--~Vvd~~g~~~Givt~ 151 (156)
T 3oi8_A 102 ---------------QFHLKSILRPAVFVPEGKSLTALLKEFREQRNHMA--IVIDEYGGTSGLVTF 151 (156)
T ss_dssp ---------------GCCHHHHCBCCCEEETTSBHHHHHHHHHHTTCCEE--EEECTTSSEEEEEEH
T ss_pred ---------------cccHHHHcCCCEEECCCCCHHHHHHHHHhcCCeEE--EEECCCCCEEEEEEH
Confidence 01345566777888999999999999998888876 999999999999987
|
| >2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-08 Score=93.59 Aligned_cols=112 Identities=10% Similarity=0.061 Sum_probs=88.8
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCC---CceEEeehHHHhhhcCCCcccccccCchhhcCCC
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS---GKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNP 572 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~---~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~ 572 (704)
..+|+|+|++++.++.+++++.|+.+.|.+ .+...+||+|++ +.+|.+++.++........
T Consensus 4 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~-~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~--------------- 67 (141)
T 2rih_A 4 AIRTSELLKRPPVSLPETATIREVATELAK-NRVGLAVLTARDNPKRPVAVVSERDILRAVAQRL--------------- 67 (141)
T ss_dssp -CBGGGGCCSCCEEEETTCBHHHHHHHHHH-HTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTC---------------
T ss_pred ceEHHHHhcCCCeEeCCCCcHHHHHHHHHH-cCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCC---------------
Confidence 468999999999999999999999999954 557788998875 5788888887654321100
Q ss_pred CCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 573 HGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+ . ..+..++|. ++.++.|+ ++.++...|...+.+++ ||+|++|+++|++|+
T Consensus 68 -----~----~--~~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l--~Vvd~~g~~~Giit~ 119 (141)
T 2rih_A 68 -----D----L--DGPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHV--VVVNKNGELVGVLSI 119 (141)
T ss_dssp -----C----T--TSBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEE--EEECTTSCEEEEEEH
T ss_pred -----C----C--CCCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEE--EEEcCCCcEEEEEEH
Confidence 0 0 014566776 78889999 99999999999988887 999999999999998
|
| >3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-08 Score=94.33 Aligned_cols=119 Identities=13% Similarity=0.075 Sum_probs=89.9
Q ss_pred ccccccccccc--cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcC
Q psy6631 494 IYNVYVEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRG 570 (704)
Q Consensus 494 ~~~~~V~dvM~--~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~ 570 (704)
....+|+|+|+ +++.++++++++.|+.+.|. ..+...+||+|+ ++.+|.+++.++..........+...
T Consensus 12 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~-~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~------- 83 (150)
T 3lqn_A 12 FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLV-KSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFER------- 83 (150)
T ss_dssp HHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHH-HHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGG-------
T ss_pred hhcCChhhcccCCCceEEECCCCcHHHHHHHHH-HcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhH-------
Confidence 45679999999 56999999999999999995 466778899974 66789999888765432111110000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 571 NPHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
. ...+..++|. ++.++.|++++.++...|...++ + ||||++|+++|+||+
T Consensus 84 -----------~--~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l--~Vvd~~g~~~Giit~ 134 (150)
T 3lqn_A 84 -----------L--EEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--I--CAVNEDGYFEGILTR 134 (150)
T ss_dssp -----------G--GGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--E--EEECTTCBEEEEEEH
T ss_pred -----------H--hcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--E--EEECCCCcEEEEEEH
Confidence 0 0114566776 78899999999999999987776 3 999999999999999
|
| >3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.2e-08 Score=93.70 Aligned_cols=125 Identities=10% Similarity=0.104 Sum_probs=94.4
Q ss_pred ccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCC
Q psy6631 494 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNP 572 (704)
Q Consensus 494 ~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~ 572 (704)
....+|+|+|++ +.++++++++.|+++.|.+ .+...+||+|+ ++.+|.++..++....-....
T Consensus 14 l~~~~v~~im~~-~~~v~~~~~~~~a~~~m~~-~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-------------- 77 (159)
T 3fv6_A 14 LKKLQVKDFQSI-PVVIHENVSVYDAICTMFL-EDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQE-------------- 77 (159)
T ss_dssp HTTCBGGGSCBC-CCEEETTSBHHHHHHHHHH-HTCSEEEEECTTSCEEEEEEHHHHHHHHTSCSC--------------
T ss_pred HhhCCHHHHcCC-CEEECCCCcHHHHHHHHHH-CCCCEEEEEcCCCcEEEEEeHHHHHHHhhccCc--------------
Confidence 345789999998 4599999999999999954 56778999984 677898888886553210000
Q ss_pred CCCCCCCCCCCCCCCCCCCccc---CccccCCCchhhhcccccccccCCCCcCcccCCCC---CcchHHHH--HHHHHHH
Q psy6631 573 HGVSASSDNIPRTENLDGPQFC---PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYT---TVTGAESR--IRMAFEA 644 (704)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~---~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g---~l~G~vtr--~r~a~e~ 644 (704)
.. ..+..++|. ++.++.|++++.++...|...+++.+ ||||++| +++|+||+ +-.++..
T Consensus 78 ---------~~--~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVvd~~g~~~~~vGiit~~dil~~l~~ 144 (159)
T 3fv6_A 78 ---------LT--SVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDAL--PVIKDTDKGFEVIGRVTKTNMTKILVS 144 (159)
T ss_dssp ---------TT--TCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEE--EEEEECSSSEEEEEEEEHHHHHHHHHH
T ss_pred ---------cc--CcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEE--EEEeCCCcceeEEEEEEHHHHHHHHHH
Confidence 00 013445554 67889999999999999999999887 9999999 99999999 5555666
Q ss_pred Hhc
Q psy6631 645 IFH 647 (704)
Q Consensus 645 ~~~ 647 (704)
+..
T Consensus 145 ~~~ 147 (159)
T 3fv6_A 145 LSE 147 (159)
T ss_dssp HHT
T ss_pred Hhh
Confidence 555
|
| >1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.5e-08 Score=94.18 Aligned_cols=131 Identities=8% Similarity=0.062 Sum_probs=92.4
Q ss_pred ccccccccccccCceEEeCCCCHHHHHHHhHhcCCCce-eecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCC
Q psy6631 494 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRV-FPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNP 572 (704)
Q Consensus 494 ~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~V-vpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~ 572 (704)
....+|+|+|+++++++.+++++.|+++.|.+ .+... +||+|+++.+|.+++.++.......- ...+...+.+...
T Consensus 13 ~~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~-~~~~~~~~Vvd~~~~vGivt~~dl~~~~~~~~-~~~~~~~~~~~~~- 89 (157)
T 1o50_A 13 MKVKDVCKLISLKPTVVEEDTPIEEIVDRILE-DPVTRTVYVARDNKLVGMIPVMHLLKVSGFHF-FGFIPKEELIRSS- 89 (157)
T ss_dssp CBHHHHTTSSCCCCEEECTTCBHHHHHHHHHH-STTCCEEEEEETTEEEEEEEHHHHHHHHHHHH-HCCCC-------C-
T ss_pred hccccHhhcccCCCceECCCCCHHHHHHHHHh-CCCCccEEEEECCEEEEEEEHHHHHHHHhhhH-HhhhccHHHHHHH-
Confidence 45678999999999999999999999999954 56777 88887667789999888754321000 0000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 573 HGVSASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.... ...+..++|.++.++.|++++.++...|...+++.+ ||||++|+++|+|++
T Consensus 90 ------~~~~--~~~~v~~im~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVvd~~g~~vGiit~ 144 (157)
T 1o50_A 90 ------MKRL--IAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEM--PVVDEKGEIVGDLNS 144 (157)
T ss_dssp ------CCCC--SSCBHHHHCBCCCCBCTTSBHHHHHHHHHHHTCSEE--EEECTTSCEEEEEEH
T ss_pred ------HHHH--cCCcHHHHcCCCeEECCCCCHHHHHHHHHHCCCcEE--EEEcCCCEEEEEEEH
Confidence 0000 111355666667889999999999999999888887 999999999999998
|
| >3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A | Back alignment and structure |
|---|
Probab=98.55 E-value=3.1e-06 Score=94.61 Aligned_cols=184 Identities=12% Similarity=0.123 Sum_probs=124.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcc--hhHHHHHHHHH----HHHHH---hhhhhccccC
Q psy6631 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKN--RFLYPGIVVLL----ATSVS---FPLGLGKYMA 233 (704)
Q Consensus 163 ~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~--~~l~p~l~gll----vg~l~---fP~~~G~~~~ 233 (704)
..-+...+++|+++|+++.+|.++..+...++... .......+ .|+.+++.+.+ .+.+. .|..-|.+
T Consensus 29 ~~l~l~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~p~a~GsG-- 104 (466)
T 3nd0_A 29 PRTLVAAIVVGLITGVLGAGFKSAVNNMLQWRSQL--AQILAPIPPLAWLVTALISGGMVALSFWLMKRFAPDTSGSG-- 104 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHSTTSCTHHHHHHHHHHHHHHHHHHHHHTTTCGGGSBCS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCCCC--
Confidence 45677789999999999999999998877654422 11111111 23444432222 22121 24443332
Q ss_pred CCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHH
Q psy6631 234 GDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFG 313 (704)
Q Consensus 234 g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G 313 (704)
.+++...+++.. ..... -.+..|++.+.+|.++|.+-|-=-|+.-+||++|
T Consensus 105 -----Ip~v~~~l~g~~--------------------~~~~~----~~~~~k~~~~~ltig~G~S~GrEGP~vqiGa~ig 155 (466)
T 3nd0_A 105 -----IPQIEGHLEGKL--------------------PLVWQ----RVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIG 155 (466)
T ss_dssp -----HHHHHHHTTSSS--------------------CCCHH----HHHHHHHHHHHHHHHTTCSCCTHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCC--------------------CCchH----HHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHH
Confidence 444544443210 00111 2346799999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHH-hCCc----hhHHHHHHHHHHHHHH
Q psy6631 314 RMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEM-TGQI----THIIPVMIAVLISNAV 387 (704)
Q Consensus 314 ~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~El-TG~~----~~~lPimia~~is~~v 387 (704)
..++..+.. + ..+--.....|+||=++++-+ |+..++..+|. .+++ ..+.|.++++++|+.+
T Consensus 156 ~~l~~~~~~--~----------~~~~r~ll~aGaAAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v 223 (466)
T 3nd0_A 156 QMTGGWFKA--T----------QENQRILIAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTLAYHSLLFGCVMATII 223 (466)
T ss_dssp HHHHHHTTC--C----------HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHSSSCCCCSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC--C----------hhHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHH
Confidence 999987531 0 123457888899998888888 89999999996 4455 2366999999999999
Q ss_pred Hhhc
Q psy6631 388 AALL 391 (704)
Q Consensus 388 a~~l 391 (704)
++.+
T Consensus 224 ~~~~ 227 (466)
T 3nd0_A 224 LRMI 227 (466)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
|
| >1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=7e-09 Score=93.40 Aligned_cols=111 Identities=15% Similarity=0.063 Sum_probs=86.7
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCC
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSA 577 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~ 577 (704)
+|+|+|++++.++++++++.|+.+.|.+ .+...+||+|+++.+|.++..+.........
T Consensus 2 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~-~~~~~~~Vvd~~~~~G~it~~dl~~~~~~~~-------------------- 60 (125)
T 1pbj_A 2 RVEDVMVTDVDTIDITASLEDVLRNYVE-NAKGSSVVVKEGVRVGIVTTWDVLEAIAEGD-------------------- 60 (125)
T ss_dssp CHHHHCBCSCCEEETTCBHHHHHHHHHH-HCCCEEEEEETTEEEEEEEHHHHHHHHHHTC--------------------
T ss_pred CHHHhcCCCceEECCCCcHHHHHHHHHH-cCCCEEEEEeCCeeEEEEeHHHHHHHHhcCC--------------------
Confidence 6889999999999999999999999954 5567788888666788888887654321100
Q ss_pred CCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 578 SSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 578 ~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.. ...+..++|. ++..+.|++++.++...|...+.+.+ ||+|+ |+++|++|+
T Consensus 61 ---~~--~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l--~Vvd~-~~~~Gvit~ 113 (125)
T 1pbj_A 61 ---DL--AEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRL--LVEED-DEIIGVISA 113 (125)
T ss_dssp ---CT--TTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEE--EEEET-TEEEEEEEH
T ss_pred ---cc--cccCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEE--EEEEC-CEEEEEEEH
Confidence 00 0013455665 78889999999999999998888887 99999 999999998
|
| >2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.6e-08 Score=91.34 Aligned_cols=114 Identities=15% Similarity=0.175 Sum_probs=88.3
Q ss_pred cccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH-hhhcCCCcccccccCchhhcCCC
Q psy6631 495 YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR-EERQRRPSRFEVTPAPDLLRGNP 572 (704)
Q Consensus 495 ~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~-~~~~~~~sr~~v~~~~~~l~~~~ 572 (704)
...+|+++|++++.++++++++.|+.+.|.+ ++...+||+|+ ++.+|.++..+. ........
T Consensus 6 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~-~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~--------------- 69 (138)
T 2p9m_A 6 KNIKVKDVMTKNVITAKRHEGVVEAFEKMLK-YKISSLPVIDDENKVIGIVTTTDIGYNLIRDKY--------------- 69 (138)
T ss_dssp TTCBGGGTSBCSCCCEETTSBHHHHHHHHHH-HTCCEEEEECTTCBEEEEEEHHHHHHHHTTTCC---------------
T ss_pred ccCCHHHhhcCCceEECCCCcHHHHHHHHHH-CCCcEEEEECCCCeEEEEEEHHHHHHHHHhhcc---------------
Confidence 3568999999999999999999999999954 55778899974 667888888876 44322100
Q ss_pred CCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhccccccccc-----CCCCcCcccCCCCCcchHHHH
Q psy6631 573 HGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKN-----FSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~-----~~~~~~Pvv~~~g~l~G~vtr 637 (704)
. .+.+..++|. ++..+.|++++.++...|...+ .+.+ ||+|++|+++|++|+
T Consensus 70 ---------~--~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l--~Vvd~~g~~~Giit~ 127 (138)
T 2p9m_A 70 ---------T--LETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQL--PVVDKNNKLVGIISD 127 (138)
T ss_dssp ---------C--SSCBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEE--EEECTTSBEEEEEEH
T ss_pred ---------c--CCcCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEE--EEECCCCeEEEEEEH
Confidence 0 0013445565 7788899999999999999888 7776 999999999999998
|
| >2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-08 Score=96.54 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=89.7
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCC-CcccccccCchhhcCCCC
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRR-PSRFEVTPAPDLLRGNPH 573 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~-~sr~~v~~~~~~l~~~~~ 573 (704)
..+|+|+|++++.++.+++++.|+.+.|. ..+...+||+|+ ++.+|.++..++...... ..+.. .
T Consensus 4 ~~~v~dim~~~~~~v~~~~tl~~a~~~m~-~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~--~---------- 70 (160)
T 2o16_A 4 MIKVEDMMTRHPHTLLRTHTLNDAKHLME-ALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSA--Q---------- 70 (160)
T ss_dssp CCBGGGTSEESCCCBCTTSBHHHHHHHHH-HHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC----------------
T ss_pred cCcHHHHhcCCCeEECCCCcHHHHHHHHH-HcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccc--c----------
Confidence 46899999999999999999999999995 455778899875 667899998887543210 00000 0
Q ss_pred CCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 574 GVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+. ... ...+..++|. ++.++.|++++.++...|...++..+ ||||+ |+++|+||+
T Consensus 71 ~~----~~~--~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVvd~-g~lvGiit~ 126 (160)
T 2o16_A 71 GD----SLA--FETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCL--PVVAK-DVLVGIITD 126 (160)
T ss_dssp -----------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCE--EEEET-TEEEEEECH
T ss_pred cc----chh--cccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEE--EEEEC-CEEEEEEEH
Confidence 00 000 0113556676 78899999999999999999888887 99999 999999999
|
| >2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.9e-08 Score=92.11 Aligned_cols=111 Identities=7% Similarity=-0.024 Sum_probs=87.6
Q ss_pred ccccccc---cCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhh-hcCCCcccccccCchhhcCCCC
Q psy6631 498 YVEDFMV---RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREE-RQRRPSRFEVTPAPDLLRGNPH 573 (704)
Q Consensus 498 ~V~dvM~---~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~-~~~~~sr~~v~~~~~~l~~~~~ 573 (704)
+|+|+|+ +++.++++++++.|+.+.|.+ .+...+||+|+++.+|.+++.++.. ....... .
T Consensus 7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~-~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~~~~--------~------ 71 (135)
T 2rc3_A 7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAA-DNIGALLVMKDEKLVGILTERDFSRKSYLLDKP--------V------ 71 (135)
T ss_dssp BHHHHHHHHCCCCCEECTTSBHHHHHHHHHH-HTCSEEEEEETTEEEEEEEHHHHHHHGGGSSSC--------G------
T ss_pred eHHHHHhcCCCCcEEECCCCcHHHHHHHHHh-cCCCEEEEEECCEEEEEEehHHHHHHHHHcCCC--------c------
Confidence 7899999 899999999999999999954 5567788888667789888888653 2211000 0
Q ss_pred CCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 574 GVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
...+..++|. ++..+.|++++.++...|...+.+.+ ||+| +|+++|++|+
T Consensus 72 -----------~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l--pVvd-~g~~~Giit~ 122 (135)
T 2rc3_A 72 -----------KDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHL--PVLD-DGKVIGLLSI 122 (135)
T ss_dssp -----------GGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEE--EEEE-TTEEEEEEEH
T ss_pred -----------ccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEE--EEEe-CCEEEEEEEH
Confidence 0113556675 78889999999999999999888887 9999 7999999998
|
| >3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.52 E-value=8.4e-09 Score=98.37 Aligned_cols=115 Identities=12% Similarity=0.140 Sum_probs=89.4
Q ss_pred ccccccccccc---CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcC
Q psy6631 495 YNVYVEDFMVR---DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRG 570 (704)
Q Consensus 495 ~~~~V~dvM~~---~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~ 570 (704)
...+|+|+|++ ++.++.+++++.|+.+.|.+ .+...+||+|+ ++.+|.++..++......... +..
T Consensus 22 ~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~-~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-------~~~-- 91 (165)
T 3fhm_A 22 MATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHA-HKIGAVVVTDADGVVLGIFTERDLVKAVAGQGA-------ASL-- 91 (165)
T ss_dssp SSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHH-HTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGG-------GGG--
T ss_pred hhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHH-cCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCC-------ccc--
Confidence 45789999996 79999999999999999954 56778899885 567898888887543210000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 571 NPHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..++|. ++.++.|++++.++...|...+++.+ ||+|+ |+++|+||+
T Consensus 92 ---------------~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVvd~-g~~~Giit~ 141 (165)
T 3fhm_A 92 ---------------QQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHV--PVEEN-GRLAGIISI 141 (165)
T ss_dssp ---------------TSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEE--EEEET-TEEEEEEEH
T ss_pred ---------------cCCHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEE--EEEEC-CEEEEEEEH
Confidence 013556666 78889999999999999999888887 99999 999999998
|
| >1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A | Back alignment and structure |
|---|
Probab=98.52 E-value=3.4e-08 Score=95.95 Aligned_cols=116 Identities=14% Similarity=0.046 Sum_probs=90.2
Q ss_pred cccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCC
Q psy6631 495 YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPH 573 (704)
Q Consensus 495 ~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~ 573 (704)
...+|+|+|+++++++++++++.|+++.|.+ .+...+||+++ ++.+|.++..++........ . ..
T Consensus 7 ~~~~v~~im~~~~~~v~~~~~l~ea~~~~~~-~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~-----~---~~----- 72 (184)
T 1pvm_A 7 MFMRVEKIMNSNFKTVNWNTTVFDAVKIMNE-NHLYGLVVKDDNGNDVGLLSERSIIKRFIPRN-----K---KP----- 72 (184)
T ss_dssp CCCBGGGTSBTTCCEEETTCBHHHHHHHHHH-HTCCEEEEECTTSCEEEEEEHHHHHHHTGGGC-----C---CG-----
T ss_pred cccCHHHhcCCCCeEECCCCcHHHHHHHHHH-cCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcc-----c---Cc-----
Confidence 3468999999999999999999999999964 56778899874 66788888887654321100 0 00
Q ss_pred CCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 574 GVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
...+..++|. ++..+.|++++.++...|...+.+.+ ||+|++|+++|+||+
T Consensus 73 -----------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVvd~~g~~~Givt~ 124 (184)
T 1pvm_A 73 -----------DEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERC--AVVDDPGRVVGIVTL 124 (184)
T ss_dssp -----------GGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEE--EEECTTCCEEEEEEH
T ss_pred -----------ccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEE--EEEcCCCeEEEEEEH
Confidence 0013556666 77888999999999999999888887 999999999999998
|
| >2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.52 E-value=6e-08 Score=91.04 Aligned_cols=118 Identities=11% Similarity=0.079 Sum_probs=89.3
Q ss_pred ccccccccccc--CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCC
Q psy6631 495 YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGN 571 (704)
Q Consensus 495 ~~~~V~dvM~~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~ 571 (704)
...+|+|+|++ ++.++++++++.|+.+.|. ..+...+||+|+ ++.+|.++..++........+.+. +...
T Consensus 9 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~-~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~----~~~~-- 81 (157)
T 2emq_A 9 MQMTVKPFLIPADKVAHVQPGNYLDHALLVLT-KTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEF----ERLE-- 81 (157)
T ss_dssp -CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHH-HSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCG----GGGG--
T ss_pred hhCcHHhhccCCccceEECCCCcHHHHHHHHH-HCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccccch----HHhc--
Confidence 45789999997 8999999999999999995 466778999985 677899998887654322111110 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 572 PHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..++|. ++..+.|++++.++...|...++ + ||||++|+++|+||+
T Consensus 82 --------------~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l--~Vvd~~g~~~Giit~ 130 (157)
T 2emq_A 82 --------------TMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--V--CVENDDGYFAGIFTR 130 (157)
T ss_dssp --------------TCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--E--EEECSSSSEEEEEEH
T ss_pred --------------CCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--E--EEEcCCCeEEEEEEH
Confidence 013556666 78889999999999999988776 3 999999999999999
|
| >3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.51 E-value=9.1e-09 Score=98.71 Aligned_cols=137 Identities=12% Similarity=0.093 Sum_probs=90.9
Q ss_pred cccccccccc--CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcC----CCcccccccCchhh
Q psy6631 496 NVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQR----RPSRFEVTPAPDLL 568 (704)
Q Consensus 496 ~~~V~dvM~~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~----~~sr~~v~~~~~~l 568 (704)
..+|+|+|++ +++++++++++.|+.+.|.+ .+...+||+|+ ++.+|.+++.++..... +.......+ +.-
T Consensus 3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~-~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~--~~~ 79 (180)
T 3sl7_A 3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVE-KKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFP--DVD 79 (180)
T ss_dssp CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHH-HTCSEEEEECTTCBEEEEEEHHHHTCC--------------------
T ss_pred ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHH-cCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccc--ccc
Confidence 3578999998 89999999999999999954 56778999985 56789999888753211 000000000 000
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 569 RGNPHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..-.............+..++|. ++.++.|++++.++...|...+++++ ||||++|+++|+||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVvd~~g~~vGiit~ 147 (180)
T 3sl7_A 80 STWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRL--PVVDADGKLIGILTR 147 (180)
T ss_dssp -CCCSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEE--EEECTTCBEEEEEEH
T ss_pred chhhhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEE--EEECCCCeEEEEEEH
Confidence 00000000000000001124567777 78899999999999999999999887 999999999999999
|
| >3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-08 Score=95.51 Aligned_cols=112 Identities=12% Similarity=0.063 Sum_probs=88.8
Q ss_pred ccccccccccc--CceEEeCCCCHHHHHHHhHhcCCCceeecc-cC--CCceEEeehHHHhhhcCCCcccccccCchhhc
Q psy6631 495 YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLV-ES--SGKFEQMEIKRREERQRRPSRFEVTPAPDLLR 569 (704)
Q Consensus 495 ~~~~V~dvM~~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv-~~--~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~ 569 (704)
...+|+++|++ ++.++++++++.|+++.|.+ .+...+||+ ++ ++.+|.++.+++........
T Consensus 18 ~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~-~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~------------ 84 (153)
T 3oco_A 18 NDKVASDVMVDRTSMSVVDVDETIADALLLYLE-EQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD------------ 84 (153)
T ss_dssp HHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHH-HCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT------------
T ss_pred CCCEeeeEecchhheEEEcCCCCHHHHHHHHHh-CCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC------------
Confidence 45789999996 89999999999999999954 556678888 43 56688888887654321000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 570 GNPHGVSASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
. .+..++|.++.++.|++++.++...|...+.+.+ ||||++|+++|+||+
T Consensus 85 ~----------------~~v~~~m~~~~~v~~~~~l~~~~~~m~~~~~~~l--pVvd~~g~~vGivt~ 134 (153)
T 3oco_A 85 K----------------AKISTIMRDIVSVPENMKVPDVMEEMSAHRVPMA--IVIDEYGGTSGIITD 134 (153)
T ss_dssp T----------------SBGGGTCBCCEEEETTSBHHHHHHHHHHTTCSCE--EEECTTSCEEEEECH
T ss_pred C----------------CcHHHHhCCCeEECCCCCHHHHHHHHHHcCCcEE--EEEeCCCCEEEEeeH
Confidence 0 0344556677889999999999999999888887 999999999999999
|
| >4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.6e-08 Score=95.28 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=87.8
Q ss_pred cccccccc------cCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcC
Q psy6631 497 VYVEDFMV------RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRG 570 (704)
Q Consensus 497 ~~V~dvM~------~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~ 570 (704)
.+|+|+|+ +++.++++++++.|+++.|.+ .+...+||+++++.+|.++..++........+.
T Consensus 7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~-~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~----------- 74 (157)
T 4fry_A 7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAE-KGIGALLVVDGDDIAGIVTERDYARKVVLQERS----------- 74 (157)
T ss_dssp CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHH-HTCSEEEEESSSSEEEEEEHHHHHHHSGGGTCC-----------
T ss_pred HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHH-cCCCEEEEeeCCEEEEEEEHHHHHHHHHhccCC-----------
Confidence 57999999 556999999999999999954 556788887777889999888865432110000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 571 NPHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
. ...+..++|. ++..+.|++++.++...|...+++++ ||+| +|+++|++++
T Consensus 75 -----------~--~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l--pVvd-~g~~~Giit~ 126 (157)
T 4fry_A 75 -----------S--KATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHL--PVLD-GGKLIGLISI 126 (157)
T ss_dssp -----------S--SSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEE--EEEE-TTEEEEEEEH
T ss_pred -----------c--cccCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEE--EEEE-CCEEEEEEEH
Confidence 0 0113556666 78889999999999999999898887 9999 7999999998
|
| >3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.48 E-value=9.2e-08 Score=78.94 Aligned_cols=66 Identities=15% Similarity=0.087 Sum_probs=55.2
Q ss_pred eEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCC-C--cccccccccccccccCc
Q psy6631 431 VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLP-S--SSGIYNVYVEDFMVRDV 507 (704)
Q Consensus 431 v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~-~--~~~~~~~~V~dvM~~~v 507 (704)
++++.+++++.||.++|.++ +.+++||+|++ +++|+++++|+++. . .....+.+|+|+|++++
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~-~i~~~~V~d~~-------------~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~ 67 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRN-KAGSAVVMEGD-------------EILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNP 67 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHT-TCSEEEEEETT-------------EEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECT
T ss_pred CEEECCCCcHHHHHHHHHHc-CCCEEEEEECC-------------EEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCC
Confidence 67899999999999999999 89999999854 89999999999632 2 22345679999999998
Q ss_pred eEE
Q psy6631 508 KYI 510 (704)
Q Consensus 508 ~tV 510 (704)
.+|
T Consensus 68 iTV 70 (70)
T 3ghd_A 68 VKI 70 (70)
T ss_dssp TCC
T ss_pred eEC
Confidence 764
|
| >1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=4.2e-08 Score=92.69 Aligned_cols=118 Identities=11% Similarity=0.063 Sum_probs=89.3
Q ss_pred ccccccccccc--CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCC
Q psy6631 495 YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGN 571 (704)
Q Consensus 495 ~~~~V~dvM~~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~ 571 (704)
...+|+|+|++ ++.++++++++.|+++.|.+ .+...+||+|+ ++.+|.++..++........+.+...
T Consensus 12 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~-~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~-------- 82 (159)
T 1yav_A 12 LEATVGQFMIEADKVAHVQVGNNLEHALLVLTK-TGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEK-------- 82 (159)
T ss_dssp TTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHH-HCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGG--------
T ss_pred hHhhHHHHhCCccceEEECCCCcHHHHHHHHHh-CCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhh--------
Confidence 45789999998 89999999999999999954 56778899975 56789999888765432211110000
Q ss_pred CCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 572 PHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.. ..+..++|. ++..+.|++++.++...|...++ + ||||++|+++|+||+
T Consensus 83 ----------~~--~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l--pVvd~~g~~vGiit~ 133 (159)
T 1yav_A 83 ----------LD--QITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--V--CVENDEQVFEGIFTR 133 (159)
T ss_dssp ----------TT--TSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--E--EEECTTCBEEEEEEH
T ss_pred ----------hc--cCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--E--EEEeCCCeEEEEEEH
Confidence 00 113556676 77888999999999999887766 3 999999999999999
|
| >3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=3.4e-08 Score=92.38 Aligned_cols=113 Identities=9% Similarity=0.022 Sum_probs=89.1
Q ss_pred cccccccccc--CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCC
Q psy6631 496 NVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNP 572 (704)
Q Consensus 496 ~~~V~dvM~~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~ 572 (704)
..+|+|+|++ +++++++++++.|+.+.|.+ .+...+||+|+ ++.+|.++..++.........
T Consensus 27 ~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~-~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-------------- 91 (149)
T 3k2v_A 27 LLRVNDIMHTGDEIPHVGLQATLRDALLEITR-KNLGMTAICDDDMNIIGIFTDGDLRRVFDTGVD-------------- 91 (149)
T ss_dssp TSBGGGTSBCGGGSCEECTTCBHHHHHHHHHH-HTSSEEEEECTTCBEEEEEEHHHHHHHHCSSSC--------------
T ss_pred ccCHHHHhcCCCCCeEECCCCcHHHHHHHHHh-CCCcEEEEECCCCcEEEEecHHHHHHHHhcCCC--------------
Confidence 3589999999 99999999999999999954 56778999985 567888888886553321100
Q ss_pred CCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 573 HGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.. +.+..++|. ++.++.|++++.++...|...+++.+ ||+|+. +++|+||+
T Consensus 92 ---------~~--~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVvd~~-~~~Giit~ 143 (149)
T 3k2v_A 92 ---------MR--DASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCV--LVADGD-HLLGVVHM 143 (149)
T ss_dssp ---------CT--TCBHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEE--EEEETT-EEEEEEEH
T ss_pred ---------cc--cCcHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEE--EEecCC-EEEEEEEH
Confidence 00 113556676 77889999999999999999888887 999987 99999987
|
| >2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=1e-07 Score=87.46 Aligned_cols=113 Identities=4% Similarity=0.000 Sum_probs=88.2
Q ss_pred cccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeeccc-CCCceEEeehHHHh-hhcCCCcccccccCchhhcCCC
Q psy6631 495 YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE-SSGKFEQMEIKRRE-ERQRRPSRFEVTPAPDLLRGNP 572 (704)
Q Consensus 495 ~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~-~~~~~~~i~~~~~~-~~~~~~sr~~v~~~~~~l~~~~ 572 (704)
...+|+|+|++++.++++++++.|+.+.|.+ .+...+||+| +++.+|.++..++. ....... .
T Consensus 5 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~-~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-----~--------- 69 (138)
T 2yzi_A 5 MKAPIKVYMTKKLLGVKPSTSVQEASRLMME-FDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL-----P--------- 69 (138)
T ss_dssp TTSBGGGTCBCCCCEECTTSBHHHHHHHHHH-HTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC-----C---------
T ss_pred hhhhHHHHhcCCCeEECCCCcHHHHHHHHHH-cCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCC-----c---------
Confidence 3568999999999999999999999999954 5577889998 56778888888764 2221100 0
Q ss_pred CCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 573 HGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
...+..++|. ++..+.|++++.++...|...++++ + |||++|+++|++|+
T Consensus 70 ------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~--l-Vvd~~g~~~Giit~ 120 (138)
T 2yzi_A 70 ------------YDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKH--I-LIEEEGKIVGIFTL 120 (138)
T ss_dssp ------------TTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSE--E-EEEETTEEEEEEEH
T ss_pred ------------ccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCE--E-EECCCCCEEEEEEH
Confidence 0113556675 7888999999999999999888866 3 89989999999998
|
| >1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-07 Score=94.87 Aligned_cols=115 Identities=12% Similarity=0.059 Sum_probs=90.3
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCC
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHG 574 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~ 574 (704)
..+++++|.+++.++.+++++.|+.+.|. ..+...+||+|+ ++.+|.++++++.....
T Consensus 12 ~~~~~~~~~~~~~~v~~~~tv~ea~~~m~-~~~~~~~pVvd~~~~l~Givt~~dl~~~~~-------------------- 70 (213)
T 1vr9_A 12 HMKVKKWVTQDFPMVEESATVRECLHRMR-QYQTNECIVKDREGHFRGVVNKEDLLDLDL-------------------- 70 (213)
T ss_dssp -CBGGGGCBSCSCEEETTCBHHHHHHHHH-HTTSSEEEEECTTSBEEEEEEGGGGTTSCT--------------------
T ss_pred ccCHHHhhcCCCeEECCCCcHHHHHHHHH-HCCCCEEEEEcCCCEEEEEEEHHHHHhhcC--------------------
Confidence 45789999999999999999999999995 466778999984 55677776666332110
Q ss_pred CCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH--HHHHHHH
Q psy6631 575 VSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR--IRMAFEA 644 (704)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr--~r~a~e~ 644 (704)
+.+..++|+ ++.++.|++++.++...|...+++++ ||+|++|+++|++|+ +..++..
T Consensus 71 -----------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVvd~~g~lvGiit~~Dil~~~~~ 130 (213)
T 1vr9_A 71 -----------DSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYL--PVVDEEMRLKGAVSLHDFLEALIE 130 (213)
T ss_dssp -----------TSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEE--EEECTTCBEEEEEEHHHHHHHHHH
T ss_pred -----------CCcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEE--EEEcCCCEEEEEEEHHHHHHHHHH
Confidence 013566776 78899999999999999999888887 999999999999998 4444443
|
| >4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ... | Back alignment and structure |
|---|
Probab=98.40 E-value=2.5e-05 Score=86.81 Aligned_cols=185 Identities=15% Similarity=0.124 Sum_probs=124.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcch---hHHHHH----HHHHHHHHH---hhhhhccc
Q psy6631 162 DPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNR---FLYPGI----VVLLATSVS---FPLGLGKY 231 (704)
Q Consensus 162 ~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~---~l~p~l----~gllvg~l~---fP~~~G~~ 231 (704)
...-+...+++|+++|+++.+|.++..+...++... ... ...++ |+.+.+ ++++++.+. .|..-|.+
T Consensus 17 ~~~~~~~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsG 93 (446)
T 4ene_A 17 PLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGA--LVH-TADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSG 93 (446)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-TSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHh-hcccchHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCC
Confidence 356677889999999999999999998887654422 111 11112 222222 223333221 24443432
Q ss_pred cCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHH
Q psy6631 232 MAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAA 311 (704)
Q Consensus 232 ~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~ 311 (704)
.+++...+++. . ....+ -....|++.+.+|.++|.+-|-=-|+.-+||+
T Consensus 94 -------ip~v~~~l~~~----~----------------~~~~~----r~~~~k~~~~~lti~~G~s~GrEGP~vqiGa~ 142 (446)
T 4ene_A 94 -------IPEIEGALEDQ----R----------------PVRWW----RVLPVKFFGGLGTLGGGMVLGREGPTVQIGGN 142 (446)
T ss_dssp -------HHHHHHHHHTC----S----------------CCCHH----HHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHH
T ss_pred -------HHHHHHHHhCC----C----------------ccchH----HHHHHHHHHHHHHHhcCCccCCcchHHHHHHH
Confidence 34454444321 0 00111 13467999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCccCCCccCCcchH-HHHHHHHHHHHHHhhh-hhHHHHHHHHHhC-Cc----hhHHHHHHHHHHH
Q psy6631 312 FGRMIGEIIFLRFPDGITHGKFIAPIIPG-GYATVGAAAFSGAVTH-TISVSVIMFEMTG-QI----THIIPVMIAVLIS 384 (704)
Q Consensus 312 ~G~~~G~~~~~~~p~~~~~~~~~~~~~p~-~yAlvGmaAf~aav~~-~is~~viv~ElTG-~~----~~~lPimia~~is 384 (704)
+|..++..+.. + ..+-- .....|+||=++++-+ |+..++..+|... ++ ..+.|.++++++|
T Consensus 143 ig~~~~~~~~~--~----------~~~~r~~ll~aGaaAG~aaaF~aPlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a 210 (446)
T 4ene_A 143 IGRMVLDIFRL--K----------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMS 210 (446)
T ss_dssp HHHHHHHHTTC--C----------SHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTSCSSSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--C----------HHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 99998886431 1 12332 6788899998888888 8999999999754 33 3478999999999
Q ss_pred HHHHhhcC
Q psy6631 385 NAVAALLQ 392 (704)
Q Consensus 385 ~~va~~l~ 392 (704)
+.+++.+.
T Consensus 211 ~~v~~~~~ 218 (446)
T 4ene_A 211 TIMYRIFN 218 (446)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHc
Confidence 99998764
|
| >1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A | Back alignment and structure |
|---|
Probab=98.39 E-value=2.3e-08 Score=91.19 Aligned_cols=113 Identities=11% Similarity=0.121 Sum_probs=87.0
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeeccc-CCCceEEeehHHHhh-hcCCCcccccccCchhhcCCCC
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE-SSGKFEQMEIKRREE-RQRRPSRFEVTPAPDLLRGNPH 573 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~-~~~~~~~i~~~~~~~-~~~~~sr~~v~~~~~~l~~~~~ 573 (704)
..+|+|+|++++.++++++++.|+.+.|.+ .+...+||+| +++.+|.++..++.. .......
T Consensus 7 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~-~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~--------------- 70 (133)
T 1y5h_A 7 MTTARDIMNAGVTCVGEHETLTAAAQYMRE-HDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLD--------------- 70 (133)
T ss_dssp -CCHHHHSEETCCCEETTSBHHHHHHHHHH-HTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCC---------------
T ss_pred hcCHHHHhcCCceEeCCCCCHHHHHHHHHH-hCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCC---------------
Confidence 358899999999999999999999999954 5677889885 466788888887642 2210000
Q ss_pred CCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 574 GVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
....+..++|. ++..+.|++++.++...|...+.+.+ ||+|+ |+++|++|+
T Consensus 71 ----------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l--~Vvd~-g~~~Giit~ 122 (133)
T 1y5h_A 71 ----------PNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRV--PVISE-HRLVGIVTE 122 (133)
T ss_dssp ----------TTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEE--EEEET-TEEEEEEEH
T ss_pred ----------ccccCHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEE--EEEEC-CEEEEEEEH
Confidence 00113556665 78889999999999999999888887 99998 999999998
|
| >2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.8e-07 Score=88.13 Aligned_cols=118 Identities=15% Similarity=0.200 Sum_probs=86.9
Q ss_pred cccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC---CCceEEeehHHHhhhcCCCcccccccCchhhcCC
Q psy6631 495 YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES---SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGN 571 (704)
Q Consensus 495 ~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~---~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~ 571 (704)
...+|+|+|++++.++++++++.|+.+.|. ..+...+||+|+ ++.+|.+++.++........... .+ .
T Consensus 11 ~~~~v~dim~~~~~~v~~~~~~~~a~~~~~-~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~-~~------~- 81 (164)
T 2pfi_A 11 HHVRVEHFMNHSITTLAKDTPLEEVVKVVT-STDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSR-AP------G- 81 (164)
T ss_dssp CSCBHHHHCBCCCCCEETTCBHHHHHHHHH-TCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC--------------C-
T ss_pred cCCCHHHHcCCCCeEECCCCcHHHHHHHHH-hCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhcccc-CC------c-
Confidence 356899999999999999999999999995 567888999984 56789999888754331110000 00 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCccc-------CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 572 PHGVSASSDNIPRTENLDGPQFC-------PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~-------~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
...+..++|. .+.++.|++++.++...|...+.+.+ ||+| +|+++|+||+
T Consensus 82 -------------~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l--pVvd-~g~l~Giit~ 138 (164)
T 2pfi_A 82 -------------HQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSL--FVTS-RGRAVGCVSW 138 (164)
T ss_dssp -------------CCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEE--EEEE-TTEEEEEEEH
T ss_pred -------------ccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEE--EEEE-CCEEEEEEEH
Confidence 0001222222 26788999999999999999888887 9999 7999999999
|
| >3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-07 Score=91.95 Aligned_cols=112 Identities=9% Similarity=0.066 Sum_probs=87.5
Q ss_pred ccccccccccc--cCceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhcCCCcccccccCchhhc
Q psy6631 494 IYNVYVEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQRRPSRFEVTPAPDLLR 569 (704)
Q Consensus 494 ~~~~~V~dvM~--~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~ 569 (704)
....+|+++|+ +++.++.+++++.|+++.|. ..+...+||+++ ++.+|.++.+++....... +
T Consensus 33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~-~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~------~------ 99 (173)
T 3ocm_A 33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLT-AAPHSFFPVCRGSLDEVVGIGRAKDLVADLITE------G------ 99 (173)
T ss_dssp HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHH-HSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHH------S------
T ss_pred cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHH-hCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcC------C------
Confidence 34578999997 46899999999999999995 466778899875 4678988888865432100 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 570 GNPHGVSASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
. .+.. .+.++.++.|++++.++...|...+.+.+ ||+|++|+++|+||+
T Consensus 100 ~----------------~~v~-~~~~~~~v~~~~~l~~al~~m~~~~~~~~--~Vvde~g~lvGiIT~ 148 (173)
T 3ocm_A 100 R----------------VRRN-RLRDPIIVHESIGILRLMDTLKRSRGQLV--LVADEFGAIEGLVTP 148 (173)
T ss_dssp S----------------CCGG-GSBCCCEECGGGCHHHHHHHHHHSTTCCE--EEECTTCCEEEEECH
T ss_pred c----------------chhH-hcCCCeEECCCCcHHHHHHHHHHcCCeEE--EEEeCCCCEEEEEeH
Confidence 0 0223 34477888999999999999999888776 999999999999998
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=4.3e-08 Score=110.35 Aligned_cols=145 Identities=15% Similarity=0.189 Sum_probs=24.2
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHH-------HHHHHhh-----cCC--ChHHHHHHHhcCCCCCCCCCCCccccccccc
Q psy6631 359 SVSVIMFEMTGQITHIIPVMIAVLI-------SNAVAAL-----LQP--SLYDSIILIKKLPYLPDLLPSSSGIYNVYVE 424 (704)
Q Consensus 359 s~~viv~ElTG~~~~~lPimia~~i-------s~~va~~-----l~~--siy~~~l~~r~~p~l~~~~~~~~~l~~~~V~ 424 (704)
..+.+.+|+|+++.+.+|+|.+.+. +..+++. ++. +.-+..-+.+ .-.+.+
T Consensus 32 ~~v~l~t~lt~~l~l~~PIi~a~m~~vt~~ela~ava~~GglG~i~~~~~~e~~~~~I~---------------~v~~~~ 96 (486)
T 2cu0_A 32 KDVDVSTRITPNVKLNIPILSAAMDTVTEWEMAVAMAREGGLGVIHRNMGIEEQVEQVK---------------RVKRAE 96 (486)
T ss_dssp TTCBCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSSCHHHHHHHHH---------------HHHTCC
T ss_pred ceEEEEeeecCCcccccceEEccceeecHHHHHHHHHhcCCceeecCCCCHHHHHHHHH---------------hhcchh
Confidence 3455778999999998898876542 2222221 111 1111111111 112457
Q ss_pred cccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccc
Q psy6631 425 DFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMV 504 (704)
Q Consensus 425 diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~ 504 (704)
|.|.+++.++.++++++++++.+.++ +++.+||+|++ +++|+|+.+|++. ..+.+++++|+
T Consensus 97 ~~m~~~~~~v~~~~tv~ea~~~~~~~-~~~~~pVvd~~-------------~lvGivt~~Dl~~-----~~~~~v~~im~ 157 (486)
T 2cu0_A 97 RLIVEDVITIAPDETVDFALFLMEKH-GIDGLPVVEDE-------------KVVGIITKKDIAA-----REGKLVKELMT 157 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccccCceEECCCCCHHHHHHHHHHc-CCcEEEEEECC-------------EEEEEEEHHHhcc-----CCCCCHHHHcc
Confidence 78999999999999999999999988 79999999754 7999999999976 24678999999
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 538 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~ 538 (704)
+++.++++++++.|+++.|. ..+...+||+|++
T Consensus 158 ~~~~~v~~~~~l~eal~~m~-~~~~~~lpVVde~ 190 (486)
T 2cu0_A 158 KEVITVPESIEVEEALKIMI-ENRIDRLPVVDER 190 (486)
T ss_dssp ----------------------------------
T ss_pred CCCeEECCcCcHHHHHHHHH-HcCCCEEEEEecC
Confidence 99999999999999999994 5667788888863
|
| >3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=9.8e-08 Score=96.97 Aligned_cols=56 Identities=11% Similarity=0.269 Sum_probs=48.9
Q ss_pred cccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh
Q psy6631 495 YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE 551 (704)
Q Consensus 495 ~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~ 551 (704)
...+|+|+|+++++++++++++.|+++.|. .+++..+||+|+ ++.+|.+++.+...
T Consensus 5 ~~~~v~~im~~~~~~v~~~~~~~~a~~~m~-~~~~~~lpVvd~~~~l~Giit~~di~~ 61 (245)
T 3l2b_A 5 VKLKVEDLEMDKIAPLAPEVSLKMAWNIMR-DKNLKSIPVADGNNHLLGMLSTSNITA 61 (245)
T ss_dssp CCCBGGGSCCBCCCCBCTTCBHHHHHHHHH-HTTCSEEEEECTTCBEEEEEEHHHHHH
T ss_pred ccCcHHHhcCCCCcEECCCCcHHHHHHHHH-HcCCCEEEEEcCCCEEEEEEEHHHHHH
Confidence 356899999999999999999999999995 577889999986 67799999988764
|
| >2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.4e-07 Score=86.74 Aligned_cols=115 Identities=10% Similarity=0.076 Sum_probs=85.3
Q ss_pred ccccccc---ccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCc-ccccccCchhhc
Q psy6631 495 YNVYVED---FMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPS-RFEVTPAPDLLR 569 (704)
Q Consensus 495 ~~~~V~d---vM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~s-r~~v~~~~~~l~ 569 (704)
...++++ +|.+++.++++++++.|+++.|.+ .+...+||+|+ ++.+|.++..++........ ...-.
T Consensus 6 ~~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~-~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~------- 77 (144)
T 2nyc_A 6 LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQ-GRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL------- 77 (144)
T ss_dssp GGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHH-HTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCS-------
T ss_pred hhcchhhcCCCCCCCceEECCCCcHHHHHHHHHH-cCcceeeEEcCCCcEEEEEcHHHHHHHhcccccccCCc-------
Confidence 3456777 899999999999999999999954 56778899874 56789888888754321100 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccc-------CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 570 GNPHGVSASSDNIPRTENLDGPQFC-------PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+..++|. ++.++.|++++.++...|...+.+.+ ||+|++|+++|++|+
T Consensus 78 ------------------~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l--~Vvd~~g~~~Giit~ 132 (144)
T 2nyc_A 78 ------------------SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRF--FVVDDVGRLVGVLTL 132 (144)
T ss_dssp ------------------BHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEE--EEECTTSBEEEEEEH
T ss_pred ------------------cHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEE--EEECCCCCEEEEEEH
Confidence 1223332 46788999999999999998888887 999999999999998
|
| >2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.1e-07 Score=99.62 Aligned_cols=110 Identities=12% Similarity=0.088 Sum_probs=88.5
Q ss_pred cccccccccccCceEEeCCCCHHHHHHHhHhc----CCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhc
Q psy6631 495 YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKEN----RSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLR 569 (704)
Q Consensus 495 ~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~----~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~ 569 (704)
...+|+++|+++++++++++++.++++.|.+. ++...+||+++ ++.+|.++.+++.... +
T Consensus 135 ~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~~---------~------ 199 (286)
T 2oux_A 135 EDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND---------D------ 199 (286)
T ss_dssp CTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC---------T------
T ss_pred ChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcCC---------C------
Confidence 45689999999999999999999999999653 26677899985 5667877777643210 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 570 GNPHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..++|. ++.++.|++++.++...|...++..+ ||||++|+++|+||+
T Consensus 200 ----------------~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~l--pVVd~~g~lvGiIT~ 250 (286)
T 2oux_A 200 ----------------DTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAV--PVTDYDDHLLGIVTV 250 (286)
T ss_dssp ----------------TSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEE--EEECTTCBEEEEEEH
T ss_pred ----------------CCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEE--EEEcCCCeEEEEEEH
Confidence 013556675 78889999999999999999888877 999999999999999
|
| >2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A | Back alignment and structure |
|---|
Probab=98.28 E-value=4.2e-07 Score=94.48 Aligned_cols=109 Identities=10% Similarity=0.102 Sum_probs=88.8
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcC----CCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcC
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENR----SLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRG 570 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~----rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~ 570 (704)
..+|+++|++++.++.+++++.++++.|.+.. +...+||+++ ++.+|.++.+++.... +
T Consensus 134 ~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~---------~------- 197 (278)
T 2yvy_A 134 EDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD---------P------- 197 (278)
T ss_dssp TTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHSC---------T-------
T ss_pred cchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcCC---------C-------
Confidence 46789999999999999999999999996532 6778999985 5678877777643210 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 571 NPHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..++|. ++.++.|++++.++...|...+++.+ ||||++|+++|+||+
T Consensus 198 ---------------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVvd~~g~lvGivT~ 248 (278)
T 2yvy_A 198 ---------------RTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVL--PVVDEEGRLVGIVTV 248 (278)
T ss_dssp ---------------TCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEE--EEECTTSBEEEEEEH
T ss_pred ---------------CCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEE--EEEeCCCeEEEEEEH
Confidence 014667775 88899999999999999998888776 999999999999998
|
| >2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.6e-07 Score=90.38 Aligned_cols=135 Identities=10% Similarity=0.028 Sum_probs=92.9
Q ss_pred cccccccccccC----ceEE--eCCCCHHHHHHHhHhcCCCceeecc--c-CCCceEEeehHHHhhhcCCC--ccccccc
Q psy6631 495 YNVYVEDFMVRD----VKYI--WNNMTYRDLKNLLKENRSLRVFPLV--E-SSGKFEQMEIKRREERQRRP--SRFEVTP 563 (704)
Q Consensus 495 ~~~~V~dvM~~~----v~tV--~~d~sl~ea~~~m~~~~rl~Vvpvv--~-~~~~~~~i~~~~~~~~~~~~--sr~~v~~ 563 (704)
...+|+|+|+++ +.++ .+++++.|+.+.|. ..+...+||+ | +++.+|.++..++....... ....+..
T Consensus 9 ~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~-~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~ 87 (185)
T 2j9l_A 9 HKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIIS-ETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVS 87 (185)
T ss_dssp CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHH-HCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCT
T ss_pred ccCcHHHHhcccccCceEEEecCCCccHHHHHHHHH-hcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCccc
Confidence 467899999987 7888 99999999999995 4667789998 4 46778999998875432110 0001111
Q ss_pred Cc-hhhcCCCCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 564 AP-DLLRGNPHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 564 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.. ..+.... .+ ..... ....+..++|. ++..+.|++++.++...|...+.+.+ ||+| +|+++|+||+
T Consensus 88 ~~~~~~~~~~-~~-~~~~~--~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l--~Vvd-~g~~vGiit~ 156 (185)
T 2j9l_A 88 TSIIYFTEHS-PP-LPPYT--PPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQC--LVTH-NGRLLGIITK 156 (185)
T ss_dssp TCEEECSSSC-CC-CCTTC--CCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEE--EEEE-TTEEEEEEEH
T ss_pred cceeecccCC-cc-ccccc--ccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEE--EEEE-CCEEEEEEEH
Confidence 00 0000000 00 00000 11125677886 88999999999999999999988887 9999 8999999999
|
| >2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A | Back alignment and structure |
|---|
Probab=98.04 E-value=8.1e-07 Score=99.59 Aligned_cols=110 Identities=10% Similarity=0.100 Sum_probs=89.0
Q ss_pred cccccccccccCceEEeCCCCHHHHHHHhHhc----CCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhc
Q psy6631 495 YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKEN----RSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLR 569 (704)
Q Consensus 495 ~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~----~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~ 569 (704)
.+.+++++|++++.++++++++.|+.+.|.+. ++...+||+|+ ++.+|.++.++....
T Consensus 153 ~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~----------------- 215 (473)
T 2zy9_A 153 EEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA----------------- 215 (473)
T ss_dssp CTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS-----------------
T ss_pred CCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC-----------------
Confidence 35688999999999999999999999999653 25678888875 566787777764321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 570 GNPHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.+ +.+..++|+ ++.+++|++++.++.+.|...++..+ ||||++|+++|+||+
T Consensus 216 -~~-------------~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~l--pVVDe~g~lvGiIT~ 268 (473)
T 2zy9_A 216 -DP-------------RTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVL--PVVDEEGRLVGIVTV 268 (473)
T ss_dssp -CT-------------TSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEE--EEECTTSBEEEEEEH
T ss_pred -CC-------------CCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEE--EEEcCCCEEEEEEeh
Confidence 00 014566775 88889999999999999999888877 999999999999999
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=9.3e-07 Score=100.41 Aligned_cols=114 Identities=7% Similarity=0.069 Sum_probs=88.4
Q ss_pred ccccccccccccCceEEeCC-CCHHHHHHHhHhcCCCceeeccc--CCCceEEeehHHHhhhcCCCcccccccCchhhcC
Q psy6631 494 IYNVYVEDFMVRDVKYIWNN-MTYRDLKNLLKENRSLRVFPLVE--SSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRG 570 (704)
Q Consensus 494 ~~~~~V~dvM~~~v~tV~~d-~sl~ea~~~m~~~~rl~Vvpvv~--~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~ 570 (704)
+...+|+|+|++++.++.++ +++.|+++.|. ..+...+||+| +++.+|.++++++...... +.
T Consensus 381 l~~~~V~diM~~~~vtv~~~~~tv~ea~~~m~-~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~-------------~~ 446 (527)
T 3pc3_A 381 WWSLAIAELELPAPPVILKSDATVGEAIALMK-KHRVDQLPVVDQDDGSVLGVVGQETLITQIVS-------------MN 446 (527)
T ss_dssp TTTSBGGGGCCCCCSCCEETTCBHHHHHHHHH-HHTCSEEEEECTTTCCEEEEEEHHHHHHHHHH-------------HC
T ss_pred ccCCcHHHhCcCCCeEEcCCCCcHHHHHHHHH-HcCCCeEEEEECCCCEEEEEEEHHHHHHHHHh-------------cc
Confidence 34689999999999999999 99999999995 46677889988 4677898888886543210 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCC----CCCcchHHHH
Q psy6631 571 NPHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTP----YTTVTGAESR 637 (704)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~----~g~l~G~vtr 637 (704)
. . ...+..++|+ ++.++.|++++.++...|...++ .||||+ +|+++|+||+
T Consensus 447 ~------~------~~~~V~~im~~~~~~v~~~~~l~~a~~~m~~~~~----~pVVd~~~~~~g~lvGIVT~ 502 (527)
T 3pc3_A 447 R------Q------QSDPAIKALNKRVIRLNESEILGKLARVLEVDPS----VLILGKNPAGKVELKALATK 502 (527)
T ss_dssp C------C------TTSBGGGGEETTCCEEETTSBHHHHHHHHTTCSE----EEEEEECSSSCEEEEEEEEH
T ss_pred C------c------CCCcHHHHhcCCCeEECCCCcHHHHHHHHhhCCE----EEEEeCCcccCCeEEEEEEH
Confidence 0 0 0114667787 88899999999999998876655 299999 5999999999
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=3.2e-06 Score=95.20 Aligned_cols=108 Identities=12% Similarity=0.130 Sum_probs=1.6
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCC
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGV 575 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~ 575 (704)
..++++|+++++++.+++++.|+++.|. ..+...+||+|+ ++.+|.++++++. ...+
T Consensus 95 ~~~~~iM~~~~~~v~~~~tv~ea~~~m~-~~~~~~~pVvd~~~~lvGivt~~Dl~------------~~~~--------- 152 (494)
T 1vrd_A 95 KKTENGIIYDPITVTPDMTVKEAIDLMA-EYKIGGLPVVDEEGRLVGLLTNRDVR------------FEKN--------- 152 (494)
T ss_dssp HTC-----------------------------------------------------------------------------
T ss_pred hhHhhcCccCCeEECCCCCHHHHHHHHH-HcCceEEEEEcCCCEEEEEEEHHHHH------------hhcC---------
Confidence 3568899999999999999999999995 466778888885 4556655555533 2000
Q ss_pred CCCCCCCCCCCCCCCCccc---CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 576 SASSDNIPRTENLDGPQFC---PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~---~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
...+..++|+ ++.++.|++++.++...|...++..+ ||||++|+++|+||+
T Consensus 153 ---------~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~l--pVVd~~g~lvGiIt~ 206 (494)
T 1vrd_A 153 ---------LSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKL--PLVSKDNKLVGLITI 206 (494)
T ss_dssp -----------------------------------------------------------------
T ss_pred ---------CCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEE--EEEcCCCeEEEEEEH
Confidence 0013556666 67888999999999999999988887 999999999999999
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=2.6e-06 Score=96.23 Aligned_cols=108 Identities=7% Similarity=0.014 Sum_probs=2.3
Q ss_pred ccccc-cccCceEEeCCCCHHHHHHHhHhcCCCceeecccCC----CceEEeehHHHhhhcCCCcccccccCchhhcCCC
Q psy6631 498 YVEDF-MVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS----GKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNP 572 (704)
Q Consensus 498 ~V~dv-M~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~----~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~ 572 (704)
...+. |++++.++++++++.|+.+.|. ..+...+||+|++ +.+|.+++++ +... ..
T Consensus 97 ~~~e~gM~~~~~~v~~~~tv~eal~~m~-~~~~s~~pVvd~~~~~g~lvGiVt~~D------------l~~~----~~-- 157 (503)
T 1me8_A 97 KNFKAGFVVSDSNVKPDQTFADVLAISQ-RTTHNTVAVTDDGTPHGVLLGLVTQRD------------YPID----LT-- 157 (503)
T ss_dssp HTTTC---------------------------------------------------------------------------
T ss_pred hhcccCcccCCeEECCCCcHHHHHHHHH-HcCceEEEEEECCCcCCeEEEEEEHHH------------HHhh----hc--
Confidence 33455 9999999999999999999995 4666778888763 4455555544 3321 00
Q ss_pred CCCCCCCCCCCCCCCCCCCccc-C--ccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 573 HGVSASSDNIPRTENLDGPQFC-P--VFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~-~--v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
. ...+..++|+ . +.++.|++++.++...|...+.+.+ ||||++|+++|+||+
T Consensus 158 -~----------~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~l--pVVDe~g~lvGiIT~ 212 (503)
T 1me8_A 158 -Q----------TETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNAL--PIIDDDQHLRYIVFR 212 (503)
T ss_dssp --------------------------------------------------------------------
T ss_pred -c----------ccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEE--EEEcCCCeEEEEEEe
Confidence 0 0114667787 4 8999999999999999999998887 999999999999999
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=97.71 E-value=6.9e-06 Score=92.55 Aligned_cols=108 Identities=9% Similarity=0.006 Sum_probs=78.7
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCC
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGV 575 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~ 575 (704)
..++++|++++.++++++++.|+.+.|. ..+...+||+|+ ++.+|.++.+++.... .
T Consensus 89 k~~~~~m~~d~v~v~~~~tv~ea~~~m~-~~~~s~~PVvd~~~~lvGiVt~rDL~~~~---------~------------ 146 (496)
T 4fxs_A 89 KIFEAGVVTHPVTVRPEQTIADVMELTH-YHGFAGFPVVTENNELVGIITGRDVRFVT---------D------------ 146 (496)
T ss_dssp HHCCC--CBCCCCBCSSSBHHHHHHHHT-SSCCCEEEEECSSSBEEEEEEHHHHTTCC---------C------------
T ss_pred cccccccccCceEECCCCCHHHHHHHHH-HcCCcEEEEEccCCEEEEEEEHHHHhhcc---------c------------
Confidence 4567889999999999999999999994 566778999985 5678888888753100 0
Q ss_pred CCCCCCCCCCCCCCCCccc---CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 576 SASSDNIPRTENLDGPQFC---PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~---~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
...+..++|+ ++.+..+.+++.++...|...+++.+ ||||++|+++|+||+
T Consensus 147 ---------~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~l--pVVDe~G~l~GiIT~ 200 (496)
T 4fxs_A 147 ---------LTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKI--LVVNDEFQLKGMITA 200 (496)
T ss_dssp ---------TTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCE--EEECTTSBCCEEECC
T ss_pred ---------CCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEE--EEEcCCCCEEEeehH
Confidence 0013556676 58889999999999999999888887 999999999999998
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=7e-06 Score=92.90 Aligned_cols=110 Identities=10% Similarity=0.079 Sum_probs=58.3
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC----CCceEEeehHHHhhhcCCCcccccccCchhhcCCC
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES----SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNP 572 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~----~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~ 572 (704)
.+++++|.+++.++.+++++.|+.+.|. ..+...+||+|+ ++.+|.+++++ +....+ .
T Consensus 108 ~~~~~im~~~~~~v~~~~tv~ea~~~m~-~~~~~~~pVvd~~~~~~~lvGiVt~~D------------l~~~~~---~-- 169 (514)
T 1jcn_A 108 KNFEQGFITDPVVLSPSHTVGDVLEAKM-RHGFSGIPITETGTMGSKLVGIVTSRD------------IDFLAE---K-- 169 (514)
T ss_dssp HTCCTTSCSSCCCCCC------------------CEESCC--------CCEECTTT------------TC----------
T ss_pred hhhhhccccCCEEECCCCCHHHHHHHHH-hcCCCEEEEEeCCCcCCEEEEEEEHHH------------HHhhhh---c--
Confidence 3678999999999999999999999995 566778899886 34455554444 322100 0
Q ss_pred CCCCCCCCCCCCCCCCCCCccc---CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 573 HGVSASSDNIPRTENLDGPQFC---PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~---~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
. ...+..++|+ .+.++.|++++.++.+.|...+...+ ||||++|+++|+|||
T Consensus 170 -~----------~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~l--pVVd~~g~lvGiIt~ 224 (514)
T 1jcn_A 170 -D----------HTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKL--PIVNDCDELVAIIAR 224 (514)
T ss_dssp ----------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCC--CEESSSSCCC----C
T ss_pred -c----------CCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcc--cEECCCCeEEEEEEH
Confidence 0 0113455665 47888999999999999999998887 999999999999998
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.65 E-value=6.9e-06 Score=92.43 Aligned_cols=108 Identities=12% Similarity=0.104 Sum_probs=3.6
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCC
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVS 576 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~ 576 (704)
..++++|.+++.++++++++.|+.++|. ..+...+||+|+++.+|.++++++... . +
T Consensus 88 k~~~~~m~~~~v~v~~~~tv~ea~~~m~-~~~~s~~pVvd~g~lvGIVt~rDl~~~----------~--~---------- 144 (490)
T 4avf_A 88 KKHETAIVRDPVTVTPSTKIIELLQMAR-EYGFSGFPVVEQGELVGIVTGRDLRVK----------P--N---------- 144 (490)
T ss_dssp HHCCC---------------------------------------------------------------------------
T ss_pred cccccCcccCceEeCCCCcHHHHHHHHH-HhCCCEEEEEECCEEEEEEEhHHhhhc----------c--c----------
Confidence 4678899999999999999999999995 456667888886666666666554210 0 0
Q ss_pred CCCCCCCCCCCCCCCccc---CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 577 ASSDNIPRTENLDGPQFC---PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~---~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
. ..+..++|+ ++.++.+++++.++.+.|...+.+.+ ||||++|+++|+||+
T Consensus 145 ---~-----~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~l--pVVDe~g~lvGiIT~ 198 (490)
T 4avf_A 145 ---A-----GDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKM--LVVDENFYLRGLVTF 198 (490)
T ss_dssp ----------------------------------------------------------------
T ss_pred ---c-----CCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEE--EEEcCCCcEEEEEeh
Confidence 0 114667777 58899999999999999999988887 999999999999998
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=6.6e-05 Score=84.34 Aligned_cols=107 Identities=8% Similarity=0.059 Sum_probs=85.7
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeeccc---CCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCC
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE---SSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHG 574 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~---~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~ 574 (704)
.++++|++++.++.+++++.|+.+.|.+ .+...+||+| +++.+|.++.+++.... . .
T Consensus 91 ~~~~im~~~~~~v~~~~tv~ea~~~m~~-~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~---------~----------~ 150 (491)
T 1zfj_A 91 RSENGVIIDPFFLTPEHKVSEAEELMQR-YRISGVPIVETLANRKLVGIITNRDMRFIS---------D----------Y 150 (491)
T ss_dssp HHTTTTSSSCCCBCSSSBHHHHHHHHHH-TTCSEEEEESCTTTCBEEEEEEHHHHHHCS---------C----------S
T ss_pred hHHhcCcCCCeEECCCCcHHHHHHHHHH-cCCCEEEEEEeCCCCEEEEEEEHHHHhhhc---------c----------C
Confidence 4588999999999999999999999954 4666788887 46778888888865320 0 0
Q ss_pred CCCCCCCCCCCCCCCCCccc--CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 575 VSASSDNIPRTENLDGPQFC--PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~--~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+.+..++|+ ++.++.|++++.++...|...+.+.+ ||||++|+++|++|+
T Consensus 151 -----------~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVVd~~g~lvGivt~ 202 (491)
T 1zfj_A 151 -----------NAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKL--PLVDNSGRLSGLITI 202 (491)
T ss_dssp -----------SSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEE--EEECTTSBEEEEEEH
T ss_pred -----------CCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEE--EEEcCCCcEEEEEEH
Confidence 013455666 67788999999999999999888887 999999999999998
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=3.1e-05 Score=87.48 Aligned_cols=108 Identities=9% Similarity=0.042 Sum_probs=84.1
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC---CCceEEeehHHHhhhcCCCcccccccCchhhcCCCC
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES---SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPH 573 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~---~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~ 573 (704)
...++.|.+++.++++++++.|+.+.|.+ .+...+||+|+ ++.+|.++.+++.... . .
T Consensus 113 ~~~~~~m~~d~v~l~~~~tv~ea~~~m~~-~~~s~~pVvd~g~~~~lvGiVt~rDl~~~~--~------~---------- 173 (511)
T 3usb_A 113 KRSESGVISDPFFLTPEHQVYDAEHLMGK-YRISGVPVVNNLDERKLVGIITNRDMRFIQ--D------Y---------- 173 (511)
T ss_dssp HTSSSCSSSSCCCBCTTSBHHHHHHHHHH-HCCSEEEEESCTTTCBEEEEEEHHHHTTCC--C------S----------
T ss_pred hccccccccCCEEECCCCCHHHHHHHHHH-cCCcEEEEEecCCCCEEEEEEEehHhhhhc--c------C----------
Confidence 34567788999999999999999999965 55667888874 5678888888753200 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCccc--CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 574 GVSASSDNIPRTENLDGPQFC--PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~--~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..++|+ ++.+..+++++.++...|...+.+.+ ||||++|+++|+||+
T Consensus 174 ------------~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~l--pVVDe~g~l~GiIT~ 225 (511)
T 3usb_A 174 ------------SIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKL--PLVDNNGVLQGLITI 225 (511)
T ss_dssp ------------SSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEE--EEECTTSBEEEEEEH
T ss_pred ------------CCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEE--EEEeCCCCEeeeccH
Confidence 012445555 67788899999999999998888876 999999999999998
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=6.2e-05 Score=84.57 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=1.4
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCC
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSA 577 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~ 577 (704)
..++.|.+++.++.+++++.|+.+.|.+ .+...+||+++++.+|.++.+++. . + .
T Consensus 94 ~~~~~m~~~~~~v~~~~tv~ea~~~~~~-~~~~~~pVvd~~~lvGivt~~Dl~------------~--~---~------- 148 (486)
T 2cu0_A 94 RAERLIVEDVITIAPDETVDFALFLMEK-HGIDGLPVVEDEKVVGIITKKDIA------------A--R---E------- 148 (486)
T ss_dssp TCC-----------------------------------------------------------------------------
T ss_pred chhhccccCceEECCCCCHHHHHHHHHH-cCCcEEEEEECCEEEEEEEHHHhc------------c--C---C-------
Confidence 3467899999999999999999999954 445567777665555555554432 1 0 0
Q ss_pred CCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH--HHHHH
Q psy6631 578 SSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR--IRMAF 642 (704)
Q Consensus 578 ~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr--~r~a~ 642 (704)
..+..++|. ++.+..|++++.++.+.|...+.+.+ ||||++|+++|++|+ +..++
T Consensus 149 --------~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~l--pVVde~g~lvGiiT~~Dil~~~ 206 (486)
T 2cu0_A 149 --------GKLVKELMTKEVITVPESIEVEEALKIMIENRIDRL--PVVDERGKLVGLITMSDLVARK 206 (486)
T ss_dssp --------------------------------------------------------------------
T ss_pred --------CCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEE--EEEecCCeEEEEEEHHHHHHhh
Confidence 013556677 77888999999999999998888776 999999999999999 44443
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00019 Score=80.22 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=0.9
Q ss_pred ccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCC----CceEEeehHHHhhhcCCCcccccccCchhhcCCCCCC
Q psy6631 500 EDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS----GKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGV 575 (704)
Q Consensus 500 ~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~----~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~ 575 (704)
+..|..++.+++||+++.|+.++|. ..+..-+||+|++ +.+|+++.+|.. ++ |.
T Consensus 141 e~g~i~dPvtl~P~~Tv~da~~l~~-~~~isgvpVvd~g~~~~kLvGIvT~RD~r--------f~-----d~-------- 198 (556)
T 4af0_A 141 ENGFITDPLCLGPDATVGDVLEIKA-KFGFCGVPITETGEPDSKLLGIVTGRDVQ--------FQ-----DA-------- 198 (556)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred ccCccCCCeEcCCCCCHHHHHHHHH-HhCCCccccccccCcCCEEEEEEeccccc--------cc-----cc--------
Confidence 4558888999999999999999995 4566678888752 344544444321 10 00
Q ss_pred CCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 576 SASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..++|+ .+.+..+..++.++...+.......+ ||||++|+|+|+|||
T Consensus 199 ----------~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kiekl--pVVd~~g~LvGlIT~ 249 (556)
T 4af0_A 199 ----------ETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKL--PIVDSNGHLVSLVAR 249 (556)
T ss_dssp ---------------------------------------------------------------
T ss_pred ----------ceEhhhhcccceEEecCCCCHHHHHHHHHHccccce--eEEccCCcEEEEEEe
Confidence 014667788 78888888888888888777777666 999999999999998
|
| >3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0022 Score=52.38 Aligned_cols=44 Identities=7% Similarity=0.009 Sum_probs=39.0
Q ss_pred ceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhh
Q psy6631 507 VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREE 551 (704)
Q Consensus 507 v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~ 551 (704)
+++++||+++.||+++|. .+++..+||+|+++.+|.++++|...
T Consensus 2 ~vtv~p~~tv~ea~~~M~-~~~i~~~~V~d~~~lvGIvT~~Di~~ 45 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILS-RNKAGSAVVMEGDEILGVVTERDILD 45 (70)
T ss_dssp EEEECTTCBHHHHHHHHH-HTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CEEECCCCcHHHHHHHHH-HcCCCEEEEEECCEEEEEEEHHHHHH
Confidence 679999999999999995 57788999999888899999999753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 704 | ||||
| d1otsa_ | 444 | f.20.1.1 (A:) Clc chloride channel {Escherichia co | 6e-28 | |
| d2d4za3 | 160 | d.37.1.1 (A:527-606,A:691-770) Chloride channel pr | 6e-04 |
| >d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]} Length = 444 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Clc chloride channel superfamily: Clc chloride channel family: Clc chloride channel domain: Clc chloride channel species: Escherichia coli [TaxId: 562]
Score = 115 bits (288), Expect = 6e-28
Identities = 51/300 (17%), Positives = 93/300 (31%), Gaps = 48/300 (16%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
G+LF IE F R G + ++ F +E A D P +
Sbjct: 180 GILFIIEEMRPQF--RYTLISIKAVFIGVIMSTIMYRIFNHE---VALIDVGKLSDAPLN 234
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
L ++ ++G++ G G + +++ L G + L +
Sbjct: 235 --TLWLYLILGIIFGIFGPIFNKWVLG---MQDLLHRVHGGNITKWVLMGGAIGGLCGLL 289
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFM 282
F + T G + T L
Sbjct: 290 GF---------------------VAPATSGGGFNLI-------PIATAGNFSMGMLVFIF 321
Query: 283 LYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGY 342
+ I +++ + P G F P+ +G G G + FP + G +
Sbjct: 322 VARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY--------HLEAGTF 373
Query: 343 ATVGAAAFSGAVTH-TISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQP-SLYDSII 400
A G A A ++ +++ EMT I+P++I L + +A LY +I+
Sbjct: 374 AIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAIL 433
|
| >d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein, CBS tandem species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]
Score = 38.9 bits (89), Expect = 6e-04
Identities = 21/134 (15%), Positives = 42/134 (31%), Gaps = 17/134 (12%)
Query: 419 YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENR-SLRVFPLVESSVAALLQPSLYDSIIL 477
YN+ V D MVRDV I + TY DL ++L++ + F + L + L
Sbjct: 9 YNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGL 68
Query: 478 IKK---------------LPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNL 522
+++ L + + + + + + + + L
Sbjct: 69 LQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTL 128
Query: 523 LKENRSLRVFPLVE 536
L +
Sbjct: 129 FSLLG-LDRAYVTS 141
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 704 | |||
| d1otsa_ | 444 | Clc chloride channel {Escherichia coli [TaxId: 562 | 100.0 | |
| d2o16a3 | 139 | Hypothetical protein VC0737 {Vibrio cholerae [TaxI | 99.45 | |
| d1y5ha3 | 123 | Hypothetical protein Rv2626c {Mycobacterium tuberc | 99.44 | |
| d2yzia1 | 132 | Uncharacterized protein PH0107 {Pyrococcus horikos | 99.41 | |
| d2yzqa2 | 122 | Uncharacterized protein PH1780 {Pyrococcus horikos | 99.41 | |
| d1pvma4 | 142 | Hypothetical protein Ta0289 {Archaeon Thermoplasma | 99.41 | |
| d1pbja3 | 120 | Hypothetical protein MTH1622 {Archaeon Methanobact | 99.4 | |
| d1vr9a3 | 121 | Hypothetical protein TM0892, CBS tandem {Thermotog | 99.39 | |
| d2d4za3 | 160 | Chloride channel protein, CBS tandem {Marbled elec | 99.39 | |
| d2yzqa1 | 156 | Uncharacterized protein PH1780 {Pyrococcus horikos | 99.38 | |
| d2ouxa2 | 127 | Magnesium transporter MgtE {Enterococcus faecalis | 99.34 | |
| d2ef7a1 | 127 | Uncharacterized protein ST2348 {Sulfolobus tokodai | 99.34 | |
| d2rc3a1 | 127 | Uncharacterized protein NE2398 {Nitrosomonas europ | 99.32 | |
| d2riha1 | 131 | Uncharacterized protein PAE2072 {Pyrobaculum aerop | 99.27 | |
| d2yvxa2 | 144 | Magnesium transporter MgtE {Thermus thermophilus [ | 99.27 | |
| d3ddja2 | 135 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 99.26 | |
| d1yava3 | 132 | Hypothetical protein YkuL {Bacillus subtilis [TaxI | 99.26 | |
| d3ddja1 | 141 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 99.26 | |
| d1zfja4 | 126 | Type II inosine monophosphate dehydrogenase CBS do | 99.19 | |
| d2j9la1 | 169 | Chloride channel protein 5, ClC-5 {Human (Homo sap | 99.18 | |
| d2d4za3 | 160 | Chloride channel protein, CBS tandem {Marbled elec | 99.08 | |
| d2ef7a1 | 127 | Uncharacterized protein ST2348 {Sulfolobus tokodai | 99.06 | |
| d1jr1a4 | 120 | Type II inosine monophosphate dehydrogenase CBS do | 99.04 | |
| d2yzqa1 | 156 | Uncharacterized protein PH1780 {Pyrococcus horikos | 99.0 | |
| d1o50a3 | 145 | Hypothetical protein TM0935 {Thermotoga maritima [ | 98.96 | |
| d2yvxa2 | 144 | Magnesium transporter MgtE {Thermus thermophilus [ | 98.94 | |
| d1pvma4 | 142 | Hypothetical protein Ta0289 {Archaeon Thermoplasma | 98.93 | |
| d2v8qe1 | 145 | 5'-AMP-activated protein kinase subunit gamma-1, A | 98.91 | |
| d2o16a3 | 139 | Hypothetical protein VC0737 {Vibrio cholerae [TaxI | 98.88 | |
| d2v8qe2 | 159 | 5'-AMP-activated protein kinase subunit gamma-1, A | 98.87 | |
| d3ddja2 | 135 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 98.86 | |
| d2ooxe2 | 153 | Uncharacterized protein C1556.08c {Schizosaccharom | 98.86 | |
| d2nyca1 | 140 | Nuclear protein SNF4 {Baker's yeast (Saccharomyces | 98.86 | |
| d2rc3a1 | 127 | Uncharacterized protein NE2398 {Nitrosomonas europ | 98.85 | |
| d1pbja3 | 120 | Hypothetical protein MTH1622 {Archaeon Methanobact | 98.84 | |
| d2yzqa2 | 122 | Uncharacterized protein PH1780 {Pyrococcus horikos | 98.83 | |
| d2yzia1 | 132 | Uncharacterized protein PH0107 {Pyrococcus horikos | 98.82 | |
| d1y5ha3 | 123 | Hypothetical protein Rv2626c {Mycobacterium tuberc | 98.8 | |
| d2ouxa2 | 127 | Magnesium transporter MgtE {Enterococcus faecalis | 98.79 | |
| d2ooxe1 | 179 | Uncharacterized protein C1556.08c {Schizosaccharom | 98.76 | |
| d1vr9a3 | 121 | Hypothetical protein TM0892, CBS tandem {Thermotog | 98.76 | |
| d2riha1 | 131 | Uncharacterized protein PAE2072 {Pyrobaculum aerop | 98.69 | |
| d3ddja1 | 141 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 98.67 | |
| d1zfja4 | 126 | Type II inosine monophosphate dehydrogenase CBS do | 98.66 | |
| d1yava3 | 132 | Hypothetical protein YkuL {Bacillus subtilis [TaxI | 98.65 | |
| d1o50a3 | 145 | Hypothetical protein TM0935 {Thermotoga maritima [ | 98.56 | |
| d1jr1a4 | 120 | Type II inosine monophosphate dehydrogenase CBS do | 98.52 | |
| d2ooxe2 | 153 | Uncharacterized protein C1556.08c {Schizosaccharom | 98.4 | |
| d2v8qe1 | 145 | 5'-AMP-activated protein kinase subunit gamma-1, A | 98.38 | |
| d2j9la1 | 169 | Chloride channel protein 5, ClC-5 {Human (Homo sap | 98.36 | |
| d2v8qe2 | 159 | 5'-AMP-activated protein kinase subunit gamma-1, A | 98.31 | |
| d2nyca1 | 140 | Nuclear protein SNF4 {Baker's yeast (Saccharomyces | 98.29 | |
| d1otsa_ | 444 | Clc chloride channel {Escherichia coli [TaxId: 562 | 98.24 | |
| d2ooxe1 | 179 | Uncharacterized protein C1556.08c {Schizosaccharom | 97.84 |
| >d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Clc chloride channel superfamily: Clc chloride channel family: Clc chloride channel domain: Clc chloride channel species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.3e-41 Score=371.21 Aligned_cols=294 Identities=16% Similarity=0.194 Sum_probs=231.9
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeeccccch--HHHHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYFAI--RNYWRGFFTAVC 129 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~~~--~~~~~~f~aav~ 129 (704)
|+|+++++.+++++. . .+ ++.+| ... .+|+|||+||+|||||||++|++|++.++++. ++++++++|+++
T Consensus 137 ~iga~i~~~l~~~~~-~--~~--~~~~r-~l~--~~GaaAglaa~F~aPlaG~lFa~E~l~~~~~~~~~~~~~~~~a~~~ 208 (444)
T d1otsa_ 137 QIGGNIGRMVLDIFR-L--KG--DEARH-TLL--ATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIM 208 (444)
T ss_dssp HHHHHHHHHHHHHTT-C--CS--HHHHH-HHH--HHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-h--hh--HHhhH-HHH--HHHHHHHHhhccCCchhhhhhhhHHHhhcchHHHHHHHHHHhhhHH
Confidence 999999999998773 1 11 11111 111 25899999999999999999999999987754 569999999999
Q ss_pred HHHHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchh
Q psy6631 130 GATVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRF 209 (704)
Q Consensus 130 a~~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~ 209 (704)
++++.++.. ++.. +|+.+.. .+++..++++++++|++||++|.+|++.+++..+++++.+ +....++.
T Consensus 209 ~~~~~~~~~----~~~~---~~~~~~~--~~~~~~~~~~~~~lgi~~g~~g~~f~~~~~~~~~~~~~~~---~~~~~~~~ 276 (444)
T d1otsa_ 209 STIMYRIFN----HEVA---LIDVGKL--SDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVH---GGNITKWV 276 (444)
T ss_dssp HHHHHHHHS----CSCC---SSCCCCC--CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHH
T ss_pred Hhhheeecc----Cccc---ccccccc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cccchhHH
Confidence 999988863 2232 4544322 2466789999999999999999999999988766554321 11112234
Q ss_pred HHHHHHHHHHHHH--HhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHH
Q psy6631 210 LYPGIVVLLATSV--SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYI 287 (704)
Q Consensus 210 l~p~l~gllvg~l--~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~ 287 (704)
+.+++++++++.+ ++|...|.+ ++.+..++++ ...+..++.++++|++
T Consensus 277 l~~~~~~~l~~ll~~~~p~~~g~G-------~~~~~~~~~~-----------------------~~~~~~l~~~~~~K~~ 326 (444)
T d1otsa_ 277 LMGGAIGGLCGLLGFVAPATSGGG-------FNLIPIATAG-----------------------NFSMGMLVFIFVARVI 326 (444)
T ss_dssp HHHHHHHHHHHHHHHHCGGGSSCS-------TTHHHHHHHT-----------------------CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcccCCCc-------hHHHHHHhcC-----------------------CcchHHHHHHHHHHHH
Confidence 4455556666655 357776653 5666655543 1234567778899999
Q ss_pred HHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHH
Q psy6631 288 FSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFE 366 (704)
Q Consensus 288 ~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~E 366 (704)
+|++|+++|.|||+|+|++++||++|+++|.++..++|.. ..+|+.|+++||+|++++++| |+|+++|++|
T Consensus 327 ~t~~t~~~G~~GG~f~P~l~iGa~~G~~~~~~~~~~~~~~--------~~~~~~~alvGmaa~~a~~~~~Plta~vl~~E 398 (444)
T d1otsa_ 327 TTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY--------HLEAGTFAIAGMGALLAASIRAPLTGIILVLE 398 (444)
T ss_dssp HHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHHHCGGG--------TCCHHHHHHHHHTHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCeehHHHHHHHHHHHHHHHHHHHhCCcc--------cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999988763 468999999999999999999 8999999999
Q ss_pred HhCCchhHHHHHHHHHHHHHHHhhcC-CChHHHHHHHh
Q psy6631 367 MTGQITHIIPVMIAVLISNAVAALLQ-PSLYDSIILIK 403 (704)
Q Consensus 367 lTG~~~~~lPimia~~is~~va~~l~-~siy~~~l~~r 403 (704)
+||++++++|+|+++++|+++++.++ +|+||.++++.
T Consensus 399 ltg~~~~~~p~~ia~~~a~~v~~~~~~~siY~~~l~~~ 436 (444)
T d1otsa_ 399 MTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILART 436 (444)
T ss_dssp HHCCGGGHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999999999996 79999998864
|
| >d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein VC0737 species: Vibrio cholerae [TaxId: 666]
Probab=99.45 E-value=2.5e-14 Score=131.84 Aligned_cols=117 Identities=17% Similarity=0.213 Sum_probs=99.8
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCC----------
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPS---------- 490 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~---------- 490 (704)
++|+|+|++++.++.+++|+.++.+.|.++ +++.+||+|++ ++++|+|+..|++...
T Consensus 2 i~v~diM~~~~~~v~~~~tl~~a~~~m~~~-~~~~lpVvd~~------------~~~~Giit~~dl~~~~~~~~~~~~~~ 68 (139)
T d2o16a3 2 IKVEDMMTRHPHTLLRTHTLNDAKHLMEAL-DIRHVPIVDAN------------KKLLGIVSQRDLLAAQESSLQRSAQG 68 (139)
T ss_dssp CBGGGTSEESCCCBCTTSBHHHHHHHHHHH-TCSEEEEECTT------------CBEEEEEEHHHHHHHHHHHCC-----
T ss_pred EEHHHhCcCCCeEECCcCCHHHHHHHHHHc-CCCeeeeeccc------------ccccccccHHHHHHHHHhhhhhhhcc
Confidence 689999999999999999999999999999 89999999987 8999999999986221
Q ss_pred cccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhh
Q psy6631 491 SSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREE 551 (704)
Q Consensus 491 ~~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~ 551 (704)
.......+|+++|++++.++++|+++.|+.+.|. .+++..+||+|+++.+|.+++.++..
T Consensus 69 ~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~-~~~~~~lpVvd~~~lvGiit~~Dil~ 128 (139)
T d2o16a3 69 DSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQ-KHKIGCLPVVAKDVLVGIITDSDFVT 128 (139)
T ss_dssp ----CCCBHHHHSCSCEEEBCTTSBHHHHHHHHH-HTTCSCEEEEETTEEEEEECHHHHHH
T ss_pred cccccccchhHhhccccccccccchHHHHHHHHH-HcCceEEEEEECCEEEEEEEHHHHHH
Confidence 1223457899999999999999999999999995 46777889999887788888877643
|
| >d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Rv2626c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.44 E-value=1.7e-14 Score=130.13 Aligned_cols=115 Identities=11% Similarity=0.161 Sum_probs=98.1
Q ss_pred ccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCC---cccccccc
Q psy6631 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPS---SSGIYNVY 498 (704)
Q Consensus 422 ~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~---~~~~~~~~ 498 (704)
+|+|+|++++.++.+++++.+|+++|.++ +.+.+||+|++ ++++|+++.+|++... ........
T Consensus 2 t~~diM~~~~~~v~~~~tl~~a~~~m~~~-~~~~~pVvd~~------------~~~~Giit~~Di~~~~~~~~~~~~~~~ 68 (123)
T d1y5ha3 2 TARDIMNAGVTCVGEHETLTAAAQYMREH-DIGALPICGDD------------DRLHGMLTDRDIVIKGLAAGLDPNTAT 68 (123)
T ss_dssp CHHHHSEETCCCEETTSBHHHHHHHHHHH-TCSEEEEECGG------------GBEEEEEEHHHHHHTTGGGTCCTTTSB
T ss_pred CHHHhcCCCCcEECCcCcHHHHHHHHHHc-CCCceEEEecc------------chhhhhhhhhhHhhhhhhcCCCcccce
Confidence 58999999999999999999999999998 89999999877 7999999999985321 22334567
Q ss_pred cccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHh
Q psy6631 499 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRRE 550 (704)
Q Consensus 499 V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~ 550 (704)
++++|++++.++++++++.|+++.|. .+++..+||+|+++.+|.++..++.
T Consensus 69 v~~im~~~~~~v~~~~~~~~~~~~m~-~~~~~~lpVvd~~~lvGiit~~Dil 119 (123)
T d1y5ha3 69 AGELARDSIYYVDANASIQEMLNVME-EHQVRRVPVISEHRLVGIVTEADIA 119 (123)
T ss_dssp HHHHHTTCCCCEETTCCHHHHHHHHH-HHTCSEEEEEETTEEEEEEEHHHHH
T ss_pred EEEEeeccceeeeecchHHHHHHHHH-HcCceEEEEEECCEEEEEEEHHHHH
Confidence 89999999999999999999999995 5777788999887777777776643
|
| >d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH0107 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.41 E-value=1.5e-13 Score=125.52 Aligned_cols=117 Identities=10% Similarity=0.103 Sum_probs=101.2
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCC--Ccccccccc
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLP--SSSGIYNVY 498 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~--~~~~~~~~~ 498 (704)
..|+|+|++++.++++++|+.++.+.|.++ +++.+||+|++ ++++|+|+..|++.. ........+
T Consensus 5 ~pV~~im~~~~~~v~~~~t~~~a~~~m~~~-~~~~~~Vvd~~------------~~~~Giit~~di~~~~~~~~~~~~~~ 71 (132)
T d2yzia1 5 APIKVYMTKKLLGVKPSTSVQEASRLMMEF-DVGSLVVINDD------------GNVVGFFTKSDIIRRVIVPGLPYDIP 71 (132)
T ss_dssp SBGGGTCBCCCCEECTTSBHHHHHHHHHHH-TCSEEEEECTT------------SCEEEEEEHHHHHHHTTTTCCCTTSB
T ss_pred CcHHHHcCCCCeEECCcCcHHHHHHHHHHc-CCcEEEEeccc------------ceeeeeeeHHHHHHHHhhccCcccee
Confidence 469999999999999999999999999999 89999999987 899999999998743 233345678
Q ss_pred cccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhh
Q psy6631 499 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREE 551 (704)
Q Consensus 499 V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~ 551 (704)
|+++|.+++.++++++++.++++.|.+ ++.+.+||+++++.+|.++..+...
T Consensus 72 v~~im~~~~~~v~~~~~~~~~~~~m~~-~~~~~l~V~~~~~~vGivt~~Dil~ 123 (132)
T d2yzia1 72 VERIMTRNLITANVNTPLGEVLRKMAE-HRIKHILIEEEGKIVGIFTLSDLLE 123 (132)
T ss_dssp GGGTCBCSCCEEETTSBHHHHHHHHHH-HTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred EeecccccccccCcchHHHHHHHHHHH-cCCCEEEEEECCEEEEEEEHHHHHH
Confidence 999999999999999999999999964 5567888888888888888777643
|
| >d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.41 E-value=1.1e-13 Score=124.71 Aligned_cols=112 Identities=19% Similarity=0.180 Sum_probs=80.3
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccc
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVE 500 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~ 500 (704)
|+|+|+|++++++++++++++++.+.|.++ +++.+||+|++ ++++|+|+.+|++.... ...+.
T Consensus 1 m~v~diM~~~~v~v~~~~~v~~a~~~m~~~-~~~~~~Vvd~~------------~~~~G~it~~dl~~~~~----~~~~~ 63 (122)
T d2yzqa2 1 MRVKTIMTQNPVTITLPATRNYALELFKKY-KVRSFPVVNKE------------GKLVGIISVKRILVNPD----EEQLA 63 (122)
T ss_dssp CBHHHHSEESCCCEESSCC-------------CCEEEEECTT------------CCEEEEEESSCC--------------
T ss_pred CCcccccCCCCEEECCcCcHHHHHHHHHHc-CCcEEEEEecc------------ccchhhhhcchhhhhhc----ccchh
Confidence 689999999999999999999999999998 89999999987 89999999999986533 45799
Q ss_pred cccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 501 DFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 501 dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
++|.++++++++++++.|+.+.|. ..+...+||+|+ ++.+|.++..++.
T Consensus 64 ~~~~~~~~~v~~~~~l~~~~~~~~-~~~~~~lpVvd~~~~liGiit~~dil 113 (122)
T d2yzqa2 64 MLVKRDVPVVKENDTLKKAAKLML-EYDYRRVVVVDSKGKPVGILTVGDII 113 (122)
T ss_dssp CCCBSCCCEEETTSBHHHHHHHHH-HHTCSEEEEECTTSCEEEEEEHHHHH
T ss_pred hccccceeecchhhHHHHHHHHHH-HcCcEEEEEEeCCCEEEEEEEHHHHH
Confidence 999999999999999999999995 466778888876 5667777777653
|
| >d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Ta0289 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.41 E-value=1.7e-13 Score=126.82 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=100.9
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCC---cccccc
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPS---SSGIYN 496 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~---~~~~~~ 496 (704)
.|+|+|+|++++.++++++|+.++++.|.++ +++.+||+|++ ++++|+++..|+++.. ......
T Consensus 2 ~m~v~dim~~~~~~v~~~~tl~~a~~~m~~~-~~~~~~V~d~~------------~~~~Giit~~di~~~~~~~~~~~~~ 68 (142)
T d1pvma4 2 FMRVEKIMNSNFKTVNWNTTVFDAVKIMNEN-HLYGLVVKDDN------------GNDVGLLSERSIIKRFIPRNKKPDE 68 (142)
T ss_dssp CCBGGGTSBTTCCEEETTCBHHHHHHHHHHH-TCCEEEEECTT------------SCEEEEEEHHHHHHHTGGGCCCGGG
T ss_pred eEEHHHhCCCCCcEECCcCcHHHHHHHHHHC-CCceEeeeccC------------CcccceEEeechhhhhhhhcccccc
Confidence 3789999999999999999999999999999 89999999977 7999999999986432 223345
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE 551 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~ 551 (704)
.+|+++|++++.++++++++.|+.+.|. ..+++.+||+|+ ++.+|.++..++..
T Consensus 69 ~~v~~im~~~~~~v~~~~~l~~~~~~m~-~~~~~~lpVvd~~g~l~Giit~~Dil~ 123 (142)
T d1pvma4 69 VPIRLVMRKPIPKVKSDYDVKDVAAYLS-ENGLERCAVVDDPGRVVGIVTLTDLSR 123 (142)
T ss_dssp SBGGGTSBSSCCEEETTCBHHHHHHHHH-HHTCSEEEEECTTCCEEEEEEHHHHTT
T ss_pred cccccccccccccccchhhHHHHHHHHH-HcCCcEEEEEecCCEEEEEEEHHHHHH
Confidence 6899999999999999999999999995 577778899976 56788888877544
|
| >d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein MTH1622 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.40 E-value=6.5e-14 Score=125.77 Aligned_cols=113 Identities=19% Similarity=0.115 Sum_probs=97.3
Q ss_pred ccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCC--ccccccccc
Q psy6631 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPS--SSGIYNVYV 499 (704)
Q Consensus 422 ~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~--~~~~~~~~V 499 (704)
+|+|+|++++.++++++|+.|+++.|.++ +++.+||+++ ++++|+|++.|++... .....+.+|
T Consensus 1 kV~diM~~~~~~v~~~~sl~ea~~~~~~~-~~~~~~V~~~-------------~~~~Gvit~~Di~~~l~~~~~~~~~~v 66 (120)
T d1pbja3 1 RVEDVMVTDVDTIDITASLEDVLRNYVEN-AKGSSVVVKE-------------GVRVGIVTTWDVLEAIAEGDDLAEVKV 66 (120)
T ss_dssp CHHHHCBCSCCEEETTCBHHHHHHHHHHH-CCCEEEEEET-------------TEEEEEEEHHHHHHHHHHTCCTTTSBH
T ss_pred ChHHhCCCCCeEECCcCcHHHHHHHHHHc-CceEEEEEeC-------------CcEEEEEEeeeccccccccccccceeE
Confidence 58999999999999999999999999998 7899998874 4899999999997532 233456789
Q ss_pred ccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 500 EDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 500 ~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
.++|+++++++++++++.|+++.|. ..+...+||.|+++.+|.++..+.
T Consensus 67 ~~~m~~~~~~v~~~~~l~~a~~~m~-~~~~~~l~V~~~~~l~Givt~~Di 115 (120)
T d1pbja3 67 WEVMERDLVTISPRATIKEAAEKMV-KNVVWRLLVEEDDEIIGVISATDI 115 (120)
T ss_dssp HHHCBCGGGEECTTSCHHHHHHHHH-HHTCSEEEEEETTEEEEEEEHHHH
T ss_pred eeecccccccccchhHHHHHHHHHH-HcCCeEEEEEECCEEEEEEEHHHH
Confidence 9999999999999999999999995 466778899888888888877765
|
| >d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0892, CBS tandem species: Thermotoga maritima [TaxId: 2336]
Probab=99.39 E-value=6.6e-13 Score=119.24 Aligned_cols=112 Identities=8% Similarity=-0.006 Sum_probs=99.3
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccc
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVE 500 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~ 500 (704)
|+|+++|++++.++.+++|++|+++.|.++ +++.+||+|++ ++++|+++..|++.... +.++.
T Consensus 1 m~v~~~m~~~~~~v~~~~tv~ea~~~m~~~-~~~~v~Vvd~~------------~~~~Gii~~~dl~~~~~----~~~v~ 63 (121)
T d1vr9a3 1 MKVKKWVTQDFPMVEESATVRECLHRMRQY-QTNECIVKDRE------------GHFRGVVNKEDLLDLDL----DSSVF 63 (121)
T ss_dssp CBGGGGCBSCSCEEETTCBHHHHHHHHHHT-TSSEEEEECTT------------SBEEEEEEGGGGTTSCT----TSBSG
T ss_pred CCchhhhcCCCeEECCCCCHHHHHHhhhhc-CcEEEEEEeCC------------ceeEEEeehhhhhhhhc----ccccc
Confidence 689999999999999999999999999998 89999999877 79999999999986533 46899
Q ss_pred cccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 501 DFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 501 dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
++|++++.++++++++.|+++.|. ..+...+||+++ ++.+|.++..+..
T Consensus 64 ~~~~~~~~~v~~~~~l~~~~~~~~-~~~~~~lpVvde~g~~~Gvit~~dil 113 (121)
T d1vr9a3 64 NKVSLPDFFVHEEDNITHALLLFL-EHQEPYLPVVDEEMRLKGAVSLHDFL 113 (121)
T ss_dssp GGCBCTTCCEETTSBHHHHHHHHH-HCCCSEEEEECTTCBEEEEEEHHHHH
T ss_pred ccccCccEEECCCCCHHHHHHHHH-hcCceeeeeECCCCeEEEEEEHHHHH
Confidence 999999999999999999999995 577889999876 5668888887764
|
| >d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein, CBS tandem species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]
Probab=99.39 E-value=1e-13 Score=129.39 Aligned_cols=122 Identities=19% Similarity=0.223 Sum_probs=101.0
Q ss_pred ccccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc------
Q psy6631 418 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS------ 491 (704)
Q Consensus 418 l~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~------ 491 (704)
.++++|+|+|++++.++++++|++|++++|.++ +++++||+|+. +.+.++|+++..|++....
T Consensus 8 ~~~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~-~~~~~PVvd~~----------~~~~lvg~is~~dl~~~l~~~~~~~ 76 (160)
T d2d4za3 8 KYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQT-KLKFFPFVDTP----------DTNTLLGSIDRTEVEGLLQRRISAY 76 (160)
T ss_dssp CSSCBTTSSSBSSCCCEETTCBHHHHHHHHHHC-CCSEEEEESCT----------TTCBEEEEEEHHHHHHHHHHHHHTT
T ss_pred ccceEHHHhcCCCCeEECCCCcHHHHHHHHHhc-CCCcccccccc----------ccccccccchHHHHHHHHhhccccc
Confidence 458999999999999999999999999999999 89999999865 4478999999888852110
Q ss_pred ---------------------ccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHh
Q psy6631 492 ---------------------SGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRRE 550 (704)
Q Consensus 492 ---------------------~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~ 550 (704)
.......+.++|.+.+.++.+|+++.++++.|. ..++..+||+|+++.+|.++++++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~-~~~v~~l~V~d~g~lvGiIt~~Di~ 155 (160)
T d2d4za3 77 RRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFS-LLGLDRAYVTSMGKLVGVVALAEIQ 155 (160)
T ss_dssp SSSCCCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHH-HHTCSEEEEEETTEEEEEEEHHHHH
T ss_pred cccchhhccccchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHH-HcCCeEEEEEECCEEEEEEEHHHHH
Confidence 112345678899999999999999999999995 4667788999888888888887764
Q ss_pred h
Q psy6631 551 E 551 (704)
Q Consensus 551 ~ 551 (704)
+
T Consensus 156 k 156 (160)
T d2d4za3 156 A 156 (160)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.38 E-value=3.1e-13 Score=126.21 Aligned_cols=118 Identities=19% Similarity=0.187 Sum_probs=97.6
Q ss_pred cccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc-------
Q psy6631 419 YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS------- 491 (704)
Q Consensus 419 ~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~------- 491 (704)
++++|+++|+++++++++++++++|.++|.++ +.+++||+|++ ++++|+|+..|++....
T Consensus 2 ~~~~v~~~m~r~v~~v~~~~~l~~a~~~m~~~-~~~~lPVvd~~------------~~lvG~it~~Dl~~~~~~~~~~~~ 68 (156)
T d2yzqa1 2 KGVEIEPYYQRYVSIVWEGTPLKAALKALLLS-NSMALPVVDSE------------GNLVGIVDETDLLRDSEIVRIMKS 68 (156)
T ss_dssp GGCBSTTTSBSCCCCEETTSBHHHHHHHHHTC-SSSEEEEECTT------------SCEEEEEEGGGGGGCGGGCC----
T ss_pred CCCCHHHHhcCCCeEECCcCcHHHHHHHHHHc-CCCEEEEEeCC------------CCceeEEeeeechhhhcccccccc
Confidence 36889999999999999999999999999999 89999999877 89999999999852110
Q ss_pred -------------------------ccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEee
Q psy6631 492 -------------------------SGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQME 545 (704)
Q Consensus 492 -------------------------~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~ 545 (704)
......+|+++|++++.++++++++.|+++.|. ..+...+||+|+ ++.+|.++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~-~~~~~~lpVvd~~g~lvGivt 147 (156)
T d2yzqa1 69 TELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMA-KYSIEQLPVIRGEGDLIGLIR 147 (156)
T ss_dssp ----------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHH-HHTCSEEEEEETTTEEEEEEE
T ss_pred cccccchhhhhhhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHH-HcCeeEEEEEeCCCEEEEEEE
Confidence 123456899999999999999999999999995 466667888875 45677777
Q ss_pred hHHHh
Q psy6631 546 IKRRE 550 (704)
Q Consensus 546 ~~~~~ 550 (704)
+.++.
T Consensus 148 ~~Dil 152 (156)
T d2yzqa1 148 DFDLL 152 (156)
T ss_dssp HHHHG
T ss_pred HHHHH
Confidence 76643
|
| >d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Enterococcus faecalis [TaxId: 1351]
Probab=99.34 E-value=5.3e-13 Score=121.09 Aligned_cols=113 Identities=12% Similarity=0.149 Sum_probs=97.0
Q ss_pred ccccccccceEEecCCCCHHHHHHHHHhcC----CccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccc
Q psy6631 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENR----SLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNV 497 (704)
Q Consensus 422 ~V~diM~~~v~~v~~~~tl~ea~~~l~~~~----~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~ 497 (704)
+++.+|++++.++++++|++||++.|+++. +...+||||++ ++++|+++.+++.... .+.
T Consensus 2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~------------~~l~G~v~~~~l~~~~----~~~ 65 (127)
T d2ouxa2 2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE------------NHLVGVISLRDLIVND----DDT 65 (127)
T ss_dssp BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT------------CBEEEEEEHHHHTTSC----TTS
T ss_pred ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecC------------CeEEEEEEeecccccc----ccE
Confidence 588999999999999999999999998863 25789999988 8999999988887553 356
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE 551 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~ 551 (704)
+|+++|+++++++++++++.++++.|. ..++..+||+|+ ++.+|.++..++..
T Consensus 66 ~v~~im~~~~~~v~~~~~l~~a~~~m~-~~~~~~lPVVD~~g~lvGiIt~~Dil~ 119 (127)
T d2ouxa2 66 LIADILNERVISVHVGDDQEDVAQTIR-DYDFLAVPVTDYDDHLLGIVTVDDIID 119 (127)
T ss_dssp BHHHHSBSCCCCEETTSBHHHHHHHHH-HHTCSEEEEECTTCBEEEEEEHHHHHH
T ss_pred EhhhhccCCCccCCCCCCHHHHHHHHH-HhCCEEEEEEeCCCEEEEEEEHHHHHH
Confidence 899999999999999999999999995 567889999975 67788888777654
|
| >d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein ST2348 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.34 E-value=5.3e-13 Score=120.81 Aligned_cols=117 Identities=13% Similarity=0.196 Sum_probs=98.2
Q ss_pred cccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc-cccccc
Q psy6631 419 YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS-SGIYNV 497 (704)
Q Consensus 419 ~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~-~~~~~~ 497 (704)
+...|+|+|+++++++++++++.++.+.|.++ +++.+||+|++ +++|+++..|++.... ......
T Consensus 2 ~~~~V~d~m~~~~v~v~~~~tl~~a~~~m~~~-~~~~~pV~d~~-------------~~~Givt~~dl~~~~~~~~~~~~ 67 (127)
T d2ef7a1 2 EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEK-NIGSVIVVDGN-------------KPVGIITERDIVKAIGKGKSLET 67 (127)
T ss_dssp CCCBGGGTSBCSCCEEETTCBHHHHHHHHHHH-TCSEEEEEETT-------------EEEEEEEHHHHHHHHHTTCCTTC
T ss_pred CccCHHHhCCCCCeEECCcCcHHHHHHHHHHc-CCceEEeeccc-------------chhhhcchhHHHHHHHhhccccc
Confidence 45679999999999999999999999999998 89999999854 7999999999975422 333567
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
+++++|.+++.++.+++++.|+++.|. ..++..+||+++ ++.+|.+++.++.
T Consensus 68 ~v~~~~~~~~~~v~~~~~l~~~~~~m~-~~~~~~l~Vvd~~~~lvGiit~~Dll 120 (127)
T d2ef7a1 68 KAEEFMTASLITIREDSPITGALALMR-QFNIRHLPVVDDKGNLKGIISIRDIT 120 (127)
T ss_dssp BGGGTSEECCCCEETTSBHHHHHHHHH-HHTCSEEEEECTTSCEEEEEEHHHHH
T ss_pred hhhhhhhhhccccccccchhHHHHHHH-HcCceEEEEEeCCCeEEEEEEHHHHH
Confidence 899999999999999999999999995 466677888876 5667777776653
|
| >d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein NE2398 species: Nitrosomonas europaea [TaxId: 915]
Probab=99.32 E-value=5.9e-13 Score=120.61 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=97.8
Q ss_pred ccccccc---cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCC---Cccccc
Q psy6631 422 YVEDFMV---RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLP---SSSGIY 495 (704)
Q Consensus 422 ~V~diM~---~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~---~~~~~~ 495 (704)
+|+|+|+ ++++++++++|+.|+.+.|.++ +.+++||+|+ ++++|++++.|++.. ......
T Consensus 3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~-~~~~vpV~~~-------------~~~vGiit~~Di~~~~~~~~~~~~ 68 (127)
T d2rc3a1 3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAAD-NIGALLVMKD-------------EKLVGILTERDFSRKSYLLDKPVK 68 (127)
T ss_dssp BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHH-TCSEEEEEET-------------TEEEEEEEHHHHHHHGGGSSSCGG
T ss_pred cHHHHHccCCCccEEECCcCcHHHHHHHHHHc-CCCEEEEEEC-------------CeEEEEEEccchhhhhhhhccccc
Confidence 5999997 4899999999999999999999 8999999984 489999999999642 334456
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHh
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRRE 550 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~ 550 (704)
+.+++++|++++.++.+++++.++++.|. .+++..+||+|+++.+|.++..|..
T Consensus 69 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~-~~~~~~lpVvd~~~~~GiIt~~Dil 122 (127)
T d2rc3a1 69 DTQVKEIMTRQVAYVDLNNTNEDCMALIT-EMRVRHLPVLDDGKVIGLLSIGDLV 122 (127)
T ss_dssp GSBGGGTSBCSCCCBCTTCBHHHHHHHHH-HHTCSEEEEEETTEEEEEEEHHHHH
T ss_pred ceeEeeeccceeEEeccCccHHHHHHHHH-HCCCcEEEEEECCEEEEEEEHHHHH
Confidence 68999999999999999999999999995 4667788888887778888877754
|
| >d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PAE2072 species: Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.27 E-value=6.4e-13 Score=120.54 Aligned_cols=117 Identities=9% Similarity=0.030 Sum_probs=96.1
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccc
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVE 500 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~ 500 (704)
++|+|+|+++++++++++|+.|+++.|.++ +.++.||++.+ +.++++|+++..|++.............
T Consensus 1 ~~V~dim~~~~v~v~~~~tl~ea~~~m~~~-~~~~~~Vv~~d----------~~~~~iGi~~~~dl~~~~~~~~~~~~~~ 69 (131)
T d2riha1 1 IRTSELLKRPPVSLPETATIREVATELAKN-RVGLAVLTARD----------NPKRPVAVVSERDILRAVAQRLDLDGPA 69 (131)
T ss_dssp CBGGGGCCSCCEEEETTCBHHHHHHHHHHH-TCSEEEEEETT----------EEEEEEEEEEHHHHHHHHHTTCCTTSBS
T ss_pred CCHHHhccCCCEEECCCCcHHHHHHHHHHh-CCCcEEEEEEc----------CCCEEEEEEeeecccccccccccccccc
Confidence 589999999999999999999999999998 89999999654 3378999999999976543344444556
Q ss_pred cccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 501 DFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 501 dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
..|.++.+++.+++++.+++++|. ..++..+||+|+ ++.+|.++..++
T Consensus 70 ~~~~~~~~~v~~~~~~~~a~~~m~-~~~i~~lpVvd~~g~l~Giit~~Dl 118 (131)
T d2riha1 70 MPIANSPITVLDTDPVHVAAEKMR-RHNIRHVVVVNKNGELVGVLSIRDL 118 (131)
T ss_dssp GGGCBCCCEEETTSBHHHHHHHHH-HHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred ccccccceeEeeecchHHHHHHHH-HCCeEEEEEEcCCCeEEEEEEHHHH
Confidence 677788999999999999999995 577888999876 456776666664
|
| >d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Thermus thermophilus [TaxId: 274]
Probab=99.27 E-value=1.3e-12 Score=121.06 Aligned_cols=114 Identities=13% Similarity=0.201 Sum_probs=98.2
Q ss_pred ccccccccceEEecCCCCHHHHHHHHHhcC----CccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccc
Q psy6631 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENR----SLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNV 497 (704)
Q Consensus 422 ~V~diM~~~v~~v~~~~tl~ea~~~l~~~~----~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~ 497 (704)
+|+++|+++++++++++|++||++.|+++. +...+||||++ ++++|+++.+|+.... ...
T Consensus 2 taG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~------------~~l~G~v~~~dl~~~~----~~~ 65 (144)
T d2yvxa2 2 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK------------GRLKGVLSLRDLIVAD----PRT 65 (144)
T ss_dssp SSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTT------------CBBCCBCBHHHHTTSC----TTC
T ss_pred CcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCC------------CCEecccchhhhhhcc----ccc
Confidence 489999999999999999999999998762 24678999988 8999999999987653 346
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhh
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREER 552 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~ 552 (704)
++.++|++++.+++|++++.+|++.|. ..++..+||+|+ ++.+|.++..++...
T Consensus 66 ~v~~im~~~~~~v~~~~~~~~a~~~m~-~~~~~~lPVVd~~g~lvGiIt~~Dil~~ 120 (144)
T d2yvxa2 66 RVAEIMNPKVVYVRTDTDQEEVARLMA-DYDFTVLPVVDEEGRLVGIVTVDDVLDV 120 (144)
T ss_dssp BSTTTSBSSCCCEESSCCHHHHHHHHH-HSCCSEEEEECSSCBEEEEEEHHHHHHH
T ss_pred chHHhcccCCccCCCCChHHHHHHHHH-HcCCCEEEEEeECCEEEEEEEHHHHHHH
Confidence 899999999999999999999999995 577889999986 577898888887543
|
| >d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.26 E-value=2.6e-12 Score=116.90 Aligned_cols=116 Identities=11% Similarity=0.107 Sum_probs=96.4
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc---------
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS--------- 491 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~--------- 491 (704)
|+|+|+|++++.++.+++++.+|++.|.++ +++.+||+|+. ++|+++..|++....
T Consensus 1 m~V~~lM~~~~~~v~~~~tl~~a~~~m~~~-~~~~l~V~d~~--------------lvg~~~~~~~~~~~~~~~~~~~~~ 65 (135)
T d3ddja2 1 MNIETLMIKNPPILSKEDRLGSAFKKINEG-GIGRIIVANEK--------------IEGLLTTRDLLSTVESYCKDSCSQ 65 (135)
T ss_dssp SSGGGTCEESCCEECTTSBHHHHHHHTTGG-GCCEEEEESSS--------------EEEEEEHHHHHGGGTTCC---CCH
T ss_pred CEeeEEeeCCCeEECCCCcHHHHHHHHHHh-CCeEEEEEecc--------------eeceeeccchhhhhccccccchhh
Confidence 679999999999999999999999999988 89999999754 999998888763321
Q ss_pred ---ccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhh
Q psy6631 492 ---SGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREER 552 (704)
Q Consensus 492 ---~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~ 552 (704)
......+|+++|++++.++++++++.|++++|. ..++..+||+|+ ++.+|.++..+....
T Consensus 66 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~-~~~i~~lpVvd~~g~lvGiit~~Dil~~ 129 (135)
T d3ddja2 66 GDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMV-TRNFGSLPVVDINDKPVGIVTEREFLLL 129 (135)
T ss_dssp HHHHHHHTSBGGGTSEESCCCEETTSCHHHHHHHHH-HHTCSEEEEECTTSCEEEEEEHHHHGGG
T ss_pred hhccccccCCHHHHhCCccceEEeccccchhhhhhh-hcceeEEEEEeCCCEEEEEEEHHHHHHH
Confidence 113457899999999999999999999999995 467888999976 556777777775443
|
| >d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein YkuL species: Bacillus subtilis [TaxId: 1423]
Probab=99.26 E-value=2.9e-12 Score=116.53 Aligned_cols=115 Identities=11% Similarity=0.035 Sum_probs=95.7
Q ss_pred ccccccc--ccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCC-------Cc
Q psy6631 421 VYVEDFM--VRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLP-------SS 491 (704)
Q Consensus 421 ~~V~diM--~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~-------~~ 491 (704)
-+|+++| .+++.++.+++|+++|+++|.++ +++.+||+|++ ++++|+++..|++.. ..
T Consensus 2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~-~~s~~pVvd~~------------~~~vGiit~~di~~~~~~~~~~~~ 68 (132)
T d1yava3 2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKT-GYTAIPVLDPS------------YRLHGLIGTNMIMNSIFGLERIEF 68 (132)
T ss_dssp CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHH-CCSEEEEECTT------------CBEEEEEEHHHHHHHHBCSSSBCG
T ss_pred CCHHHccccccceEEEcCCCCHHHHHHHHHhh-CCCceEEeecc------------cccccEEEcchhHHHhhccccccc
Confidence 3689999 56899999999999999999999 89999999977 799999999999622 11
Q ss_pred ccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh
Q psy6631 492 SGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE 551 (704)
Q Consensus 492 ~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~ 551 (704)
......+|+++|+++++++++++++.++.+.|.+ + +++||+++ +..+|.+++++...
T Consensus 69 ~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~-~--~~l~Vvd~~~~~~Givt~~dil~ 126 (132)
T d1yava3 69 EKLDQITVEEVMLTDIPRLHINDPIMKGFGMVIN-N--GFVCVENDEQVFEGIFTRRVVLK 126 (132)
T ss_dssp GGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTT-C--SEEEEECTTCBEEEEEEHHHHHH
T ss_pred cccccccccccccccccccccchhHHHHHHHHHh-C--CEEEEEccCCEEEEEEEHHHHHH
Confidence 3345678999999999999999999999999943 2 45888876 56678888877543
|
| >d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.26 E-value=1e-12 Score=120.47 Aligned_cols=117 Identities=12% Similarity=0.153 Sum_probs=99.8
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCC--------cc
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPS--------SS 492 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~--------~~ 492 (704)
+.|+++|++++.++++++|+.+++++|.++ +++++||+|++ ++++|+++..|++... ..
T Consensus 2 ~~V~~iMt~~v~~v~~~~tl~~a~~~m~~~-~~~~ipVv~~~------------~~~~g~i~~~di~~~~~~~~~~~~~~ 68 (141)
T d3ddja1 2 FPVKVFMSTKVQTIYKEVRLDQAVKLMLRR-GFRRLPVIDDD------------NKVVGIVTVVNAIKQLAKAVDKLDPD 68 (141)
T ss_dssp CBHHHHSBCSCCCEETTSBHHHHHHHHHHH-TCSEEEEECTT------------SCEEEEEEHHHHHHHHHHHHHHTCTH
T ss_pred EeeHHhCcCCCeEEcCcCcHHHHHHHHHHc-CCCeeeccccc------------Cccccccccccchhhhhccccccccc
Confidence 569999999999999999999999999999 89999999987 7899999999886331 12
Q ss_pred cccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh
Q psy6631 493 GIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE 551 (704)
Q Consensus 493 ~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~ 551 (704)
.....+|+++|+++++++.+++++.++++.|. ..+.+.+||+|+ ++.+|.++..++..
T Consensus 69 ~~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~-~~~~~~l~Vvd~~~~~iGiIt~~Dil~ 127 (141)
T d3ddja1 69 YFYGKVVKDVMVTNLVTIDELASVNRAAAEMI-VKRIGSLLILNKDNTIRGIITERDLLI 127 (141)
T ss_dssp HHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHH-HHTCSEEEEECTTSCEEEEEEHHHHHH
T ss_pred cccCCCHHHHhCcccccccccchhhHHHHHHH-HcCCCEEEEEccCCEEEEEEEHHHHHH
Confidence 23567899999999999999999999999995 577778999975 66788888877643
|
| >d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.19 E-value=1.4e-11 Score=111.24 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=89.6
Q ss_pred cccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccC
Q psy6631 427 MVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRD 506 (704)
Q Consensus 427 M~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~ 506 (704)
|.++++++++++|+.|++++|.++ +++++||||+. .+++++|+|++.|+....... ......+|.++
T Consensus 3 mi~dpvtv~~~~tv~~a~~~m~~~-~~~~~pVvD~~----------~~~~lvGivt~~Di~~~~~~~--~~~~~~~~~~~ 69 (126)
T d1zfja4 3 VIIDPFFLTPEHKVSEAEELMQRY-RISGVPIVETL----------ANRKLVGIITNRDMRFISDYN--APISEHMTSEH 69 (126)
T ss_dssp TSSSCCCBCSSSBHHHHHHHHHHT-TCSEEEEESCT----------TTCBEEEEEEHHHHHHCSCSS--SBTTTSCCCSC
T ss_pred CEeCceEECCCCCHHHHHHHHHHh-CCCcEEEEeec----------cCCeEEEEeEHHHHHHhhccC--Cceeeeeeccc
Confidence 678899999999999999999998 89999999874 237899999999997554322 22345567888
Q ss_pred ceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh
Q psy6631 507 VKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE 551 (704)
Q Consensus 507 v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~ 551 (704)
+.++.+++++.++.++|. ..++..+||+|+ ++.+|.+++.++..
T Consensus 70 ~~~~~~~~~l~~a~~~m~-~~~~~~lpVVd~~g~lvGiiT~~Dil~ 114 (126)
T d1zfja4 70 LVTAAVGTDLETAERILH-EHRIEKLPLVDNSGRLSGLITIKDIEK 114 (126)
T ss_dssp CCCEETTCCHHHHHHHHH-HTTCSEEEEECTTSBEEEEEEHHHHHH
T ss_pred eeecCCCCCHHHHHHHHH-hcCCcEEEEEcCCCeEEEEEEHHHHHH
Confidence 899999999999999995 577888999976 46677777766543
|
| >d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein 5, ClC-5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=7.3e-12 Score=118.62 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=94.5
Q ss_pred ccccccccccc------eEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCC----
Q psy6631 420 NVYVEDFMVRD------VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLP---- 489 (704)
Q Consensus 420 ~~~V~diM~~~------v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~---- 489 (704)
...++|+|.+. .+.+.+++|++|+.++|.++ +++++|||+++ ++++++|+|+++|++..
T Consensus 2 ~~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~-~~~~~PVV~~~----------~~~~lvG~is~~dl~~~l~~~ 70 (169)
T d2j9la1 2 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISET-TYSGFPVVVSR----------ESQRLVGFVLRRDLIISIENA 70 (169)
T ss_dssp CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHC-CCSEEEEESCT----------TTCBEEEEEEHHHHHHHHHHH
T ss_pred ccchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHc-CCCceeeeecC----------CCCeEEEEEEhHHHHHHHhcc
Confidence 45689999742 34567889999999999999 89999999654 34799999998888621
Q ss_pred ----------------------CcccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehH
Q psy6631 490 ----------------------SSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIK 547 (704)
Q Consensus 490 ----------------------~~~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~ 547 (704)
........+|+++|++++.++.+++++.++.+.|. ..+...+||+|+++.+|.+++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~-~~~~~~l~V~d~g~lvGiIt~~ 149 (169)
T d2j9la1 71 RKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFR-KLGLRQCLVTHNGRLLGIITKK 149 (169)
T ss_dssp HTSCSCCCTTCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHH-HHTCSEEEEEETTEEEEEEEHH
T ss_pred cccccccccchhhhhcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHH-hcCceEEEEEECCEEEEEEEHH
Confidence 01122346799999999999999999999999995 4567778888887778877777
Q ss_pred HHhh
Q psy6631 548 RREE 551 (704)
Q Consensus 548 ~~~~ 551 (704)
++..
T Consensus 150 Dil~ 153 (169)
T d2j9la1 150 DVLK 153 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
|
| >d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein, CBS tandem species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]
Probab=99.08 E-value=3.4e-12 Score=118.87 Aligned_cols=147 Identities=25% Similarity=0.292 Sum_probs=99.5
Q ss_pred CCcccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC---CCceEEeehHHHhhhcCCC----ccccc
Q psy6631 489 PSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES---SGKFEQMEIKRREERQRRP----SRFEV 561 (704)
Q Consensus 489 ~~~~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~---~~~~~~i~~~~~~~~~~~~----sr~~v 561 (704)
+...+.++.+|+|+|+++++++++++++.|+++.|. ..+..-+||+++ +..++.+++.+........ .+...
T Consensus 3 ~~~~~~~~~~V~diM~~~~~~v~~~~tv~e~~~~l~-~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~ 81 (160)
T d2d4za3 3 WSSANKYNIQVGDIMVRDVTSIASTSTYGDLLHVLR-QTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPF 81 (160)
T ss_dssp CCCCCCSSCBTTSSSBSSCCCEETTCBHHHHHHHHH-HCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCC
T ss_pred CCcCCccceEHHHhcCCCCeEECCCCcHHHHHHHHH-hcCCCccccccccccccccccchHHHHHHHHhhccccccccch
Confidence 344556788999999999999999999999999995 566778888874 3568888887775422111 11100
Q ss_pred ccCchhhcCCCCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH--H
Q psy6631 562 TPAPDLLRGNPHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR--I 638 (704)
Q Consensus 562 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr--~ 638 (704)
.......... .......... .....++|. ++.++.|++++.++.+.|...+++++ ||++ +|+++|+||| +
T Consensus 82 ~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l--~V~d-~g~lvGiIt~~Di 154 (160)
T d2d4za3 82 EEMLTLEEIY--RWEQREKNVV--VNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRA--YVTS-MGKLVGVVALAEI 154 (160)
T ss_dssp CSCCBHHHHH--HHHHHHTTCB--CCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEE--EEEE-TTEEEEEEEHHHH
T ss_pred hhccccchhh--hhhhhhcccc--cceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEE--EEEE-CCEEEEEEEHHHH
Confidence 0000000000 0000000111 123556677 89999999999999999999999997 8876 6999999999 7
Q ss_pred HHHHH
Q psy6631 639 RMAFE 643 (704)
Q Consensus 639 r~a~e 643 (704)
-+|||
T Consensus 155 ~k~I~ 159 (160)
T d2d4za3 155 QAAIE 159 (160)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 77776
|
| >d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein ST2348 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.06 E-value=3.1e-11 Score=108.94 Aligned_cols=122 Identities=11% Similarity=0.158 Sum_probs=98.4
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCC
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGV 575 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~ 575 (704)
+..|+|+|++++.++.+++++.|+.+.|. ..+...+||.|+++.+|.+++++........ .+
T Consensus 3 ~~~V~d~m~~~~v~v~~~~tl~~a~~~m~-~~~~~~~pV~d~~~~~Givt~~dl~~~~~~~--------------~~--- 64 (127)
T d2ef7a1 3 EEIVKEYMKTQVISVTKDAKLNDIAKVMT-EKNIGSVIVVDGNKPVGIITERDIVKAIGKG--------------KS--- 64 (127)
T ss_dssp CCBGGGTSBCSCCEEETTCBHHHHHHHHH-HHTCSEEEEEETTEEEEEEEHHHHHHHHHTT--------------CC---
T ss_pred ccCHHHhCCCCCeEECCcCcHHHHHHHHH-HcCCceEEeecccchhhhcchhHHHHHHHhh--------------cc---
Confidence 46799999999999999999999999995 4667788999888888999998875433110 00
Q ss_pred CCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH--HHHHHHHHh
Q psy6631 576 SASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR--IRMAFEAIF 646 (704)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr--~r~a~e~~~ 646 (704)
.. .+..++|. ++.++.|++++.++.+.|...+++++ ||||++|+++|++|+ +=.+++++|
T Consensus 65 ----~~-----~~v~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l--~Vvd~~~~lvGiit~~Dll~~i~~~~ 127 (127)
T d2ef7a1 65 ----LE-----TKAEEFMTASLITIREDSPITGALALMRQFNIRHL--PVVDDKGNLKGIISIRDITRAIDDMF 127 (127)
T ss_dssp ----TT-----CBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEE--EEECTTSCEEEEEEHHHHHHHHHHHC
T ss_pred ----cc-----chhhhhhhhhccccccccchhHHHHHHHHcCceEE--EEEeCCCeEEEEEEHHHHHHHHHhhC
Confidence 00 12445666 88889999999999999999999887 999999999999999 766787765
|
| >d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.04 E-value=2.6e-12 Score=115.30 Aligned_cols=111 Identities=11% Similarity=0.122 Sum_probs=52.5
Q ss_pred cccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccccccccc--c
Q psy6631 427 MVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFM--V 504 (704)
Q Consensus 427 M~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM--~ 504 (704)
|.++++++.+++|+.|+.++|.++ +++++||+|++ ..+++++|+|+.+|+..... ...+.++.++| .
T Consensus 2 m~~~pvtv~~~~tl~da~~~m~~~-~i~~~pVvd~~---------~~~~~lvGivT~~Di~~~~~-~~~~~~~~~~~~~~ 70 (120)
T d1jr1a4 2 FITDPVVLSPKDRVRDVFEAKARH-GFCGIPITDTG---------RMGSRLVGIISSRDIDFLKE-EEHDRFLEEIMTKR 70 (120)
T ss_dssp EECTTCC----CCCC--CCBC-------------------------CTTCCC-----------------------CCSBT
T ss_pred cccCCEEECCcCCHHHHHHHHHHh-CCCeEEEeecc---------ccCCeEeeeeeeeeeeehhc-cccCceeEEEEeec
Confidence 677888999999999999999998 89999999863 02368999999999864433 33345566665 4
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
+++.++.+++++.||+++| ..++...+||+|+ ++.+|.+++.|+
T Consensus 71 ~~~~~v~~~~~~~~a~~~m-~~~~i~~lpVVd~~~~lvGiiT~~Di 115 (120)
T d1jr1a4 71 EDLVVAPAGITLKEANEIL-QRSKKGKLPIVNENDELVAIIARTDL 115 (120)
T ss_dssp TTSCCEETTCCHHHHHHHT-CSCC---CEEEETTTEEEEEECHHHH
T ss_pred cCceEECCCCCHHHHHHHH-HHcCccEEEEEcCCCEEEEEEEHHHh
Confidence 5689999999999999999 5677888998875 566777777664
|
| >d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.00 E-value=6.5e-11 Score=110.04 Aligned_cols=139 Identities=12% Similarity=0.156 Sum_probs=94.3
Q ss_pred cccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCc---ccccccCc-h--h
Q psy6631 495 YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPS---RFEVTPAP-D--L 567 (704)
Q Consensus 495 ~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~s---r~~v~~~~-~--~ 567 (704)
.+.+|+++|++++.++++|+++.+|++.| ..++..-+||+++ ++.+|.++..+......... ........ + .
T Consensus 2 ~~~~v~~~m~r~v~~v~~~~~l~~a~~~m-~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 80 (156)
T d2yzqa1 2 KGVEIEPYYQRYVSIVWEGTPLKAALKAL-LLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWI 80 (156)
T ss_dssp GGCBSTTTSBSCCCCEETTSBHHHHHHHH-HTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC----------------
T ss_pred CCCCHHHHhcCCCeEECCcCcHHHHHHHH-HHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhhhhh
Confidence 46789999999999999999999999999 5678889999965 66788898887643211100 00000000 0 0
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 568 LRGNPHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 568 l~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..... ..............+..++|+ ++.+++|++++.++.+.|...+.+++ ||||++|+++|++|+
T Consensus 81 ~~~~~-~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~l--pVvd~~g~lvGivt~ 148 (156)
T d2yzqa1 81 LESHP-TLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQL--PVIRGEGDLIGLIRD 148 (156)
T ss_dssp -----------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEE--EEEETTTEEEEEEEH
T ss_pred hhhhh-hhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEE--EEEeCCCEEEEEEEH
Confidence 00000 000000011111135667888 89999999999999999999999998 999999999999998
|
| >d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0935 species: Thermotoga maritima [TaxId: 2336]
Probab=98.96 E-value=2.7e-10 Score=104.45 Aligned_cols=115 Identities=11% Similarity=0.157 Sum_probs=92.8
Q ss_pred ccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCC-----------
Q psy6631 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPS----------- 490 (704)
Q Consensus 422 ~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~----------- 490 (704)
.|.++|+++++++.+++++.++.+.|.++ +++.+||+|++ ++++|+|+..|++...
T Consensus 5 ~v~~~m~~~p~~v~~~~~v~~a~~~m~~~-~~~~ipVvd~~------------~~~vGiis~~Dl~~~~~~~~~~~~~~~ 71 (145)
T d1o50a3 5 DVCKLISLKPTVVEEDTPIEEIVDRILED-PVTRTVYVARD------------NKLVGMIPVMHLLKVSGFHFFGFIPKE 71 (145)
T ss_dssp HHTTSSCCCCEEECTTCBHHHHHHHHHHS-TTCCEEEEEET------------TEEEEEEEHHHHHHHHHHHHHCCCC--
T ss_pred EhHHhCCCCCEEECCcCcHHHHHHHHHHc-CCceEEEeccC------------cceeeeeccchhhhhhhcccccccchh
Confidence 46778999999999999999999999998 89999999877 7999999999986210
Q ss_pred ------cccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh
Q psy6631 491 ------SSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE 551 (704)
Q Consensus 491 ------~~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~ 551 (704)
........++++|. ++.++.+++++.++++.|.+ .++..+||+|+ ++.+|.++..++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~l~~a~~~m~~-~~i~~lpVVd~~g~i~Gvit~~dil~ 137 (145)
T d1o50a3 72 ELIRSSMKRLIAKNASEIML-DPVYVHMDTPLEEALKLMID-NNIQEMPVVDEKGEIVGDLNSLEILL 137 (145)
T ss_dssp -----CCCCCSSCBHHHHCB-CCCCBCTTSBHHHHHHHHHH-HTCSEEEEECTTSCEEEEEEHHHHHH
T ss_pred HHHHhhhhhccccCHHHHcC-CCEEEcCCCCHHHHHHHHHH-cCceEEEEEeCCCeEEEEEEHHHHHH
Confidence 01234456777775 46789999999999999954 67778888865 66788888777644
|
| >d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Thermus thermophilus [TaxId: 274]
Probab=98.94 E-value=2e-10 Score=105.97 Aligned_cols=107 Identities=9% Similarity=0.114 Sum_probs=83.8
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcC----CCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCC
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENR----SLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNP 572 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~----rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~ 572 (704)
+++++|++++.++++++++.||++.|.+.+ +...++|+++ ++.+|.++.++ +.. ..
T Consensus 2 taG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~d------------l~~------~~- 62 (144)
T d2yvxa2 2 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRD------------LIV------AD- 62 (144)
T ss_dssp SSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHH------------HTT------SC-
T ss_pred CcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhh------------hhh------cc-
Confidence 578999999999999999999999995422 3556777876 44455444433 322 10
Q ss_pred CCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 573 HGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.+....++|+ +++++.|++++.++...|...++.++ ||||++|+|+|+||+
T Consensus 63 ------------~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~l--PVVd~~g~lvGiIt~ 114 (144)
T d2yvxa2 63 ------------PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVL--PVVDEEGRLVGIVTV 114 (144)
T ss_dssp ------------TTCBSTTTSBSSCCCEESSCCHHHHHHHHHHSCCSEE--EEECSSCBEEEEEEH
T ss_pred ------------cccchHHhcccCCccCCCCChHHHHHHHHHHcCCCEE--EEEeECCEEEEEEEH
Confidence 0114677888 89999999999999999999999887 999999999999999
|
| >d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Ta0289 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.93 E-value=1.7e-10 Score=106.04 Aligned_cols=113 Identities=15% Similarity=0.098 Sum_probs=90.2
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhc-CCCcccccccCchhhcCCCCC
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQ-RRPSRFEVTPAPDLLRGNPHG 574 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~-~~~sr~~v~~~~~~l~~~~~~ 574 (704)
.+|+|+|++++.++++++++.||++.|. ..+...+||+++ ++.+|.+++++..... ..... .
T Consensus 3 m~v~dim~~~~~~v~~~~tl~~a~~~m~-~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~--------~------- 66 (142)
T d1pvma4 3 MRVEKIMNSNFKTVNWNTTVFDAVKIMN-ENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKK--------P------- 66 (142)
T ss_dssp CBGGGTSBTTCCEEETTCBHHHHHHHHH-HHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCC--------G-------
T ss_pred EEHHHhCCCCCcEECCcCcHHHHHHHHH-HCCCceEeeeccCCcccceEEeechhhhhhhhccc--------c-------
Confidence 5799999999999999999999999995 466778888875 5778988888764321 10000 0
Q ss_pred CCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 575 VSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
. ..+..++|+ ++.++.|++++.++...|...+++++ ||||++|+++|++|+
T Consensus 67 -----~-----~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~l--pVvd~~g~l~Giit~ 118 (142)
T d1pvma4 67 -----D-----EVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERC--AVVDDPGRVVGIVTL 118 (142)
T ss_dssp -----G-----GSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEE--EEECTTCCEEEEEEH
T ss_pred -----c-----ccccccccccccccccchhhHHHHHHHHHHcCCcEE--EEEecCCEEEEEEEH
Confidence 0 013456677 88999999999999999999999887 999999999999998
|
| >d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.91 E-value=1.4e-09 Score=99.66 Aligned_cols=115 Identities=7% Similarity=0.061 Sum_probs=92.1
Q ss_pred cccccc---ccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccc---cc
Q psy6631 422 YVEDFM---VRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSG---IY 495 (704)
Q Consensus 422 ~V~diM---~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~---~~ 495 (704)
+++|++ .+++.++.+++++.||++.|.++ +.+.+||+|++ ++++|+|+..|++...... ..
T Consensus 10 ~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~-~~~~lpVvd~~------------~~~~Gvit~~di~~~l~~~~~~~~ 76 (145)
T d2v8qe1 10 SLEELQIGTYANIAMVRTTTPVYVALGIFVQH-RVSALPVVDEK------------GRVVDIYSKFDVINLAAEKTYNNL 76 (145)
T ss_dssp BHHHHTCSBCSSCCCEETTCBHHHHHHHHHHH-CCSEEEEECTT------------SBEEEEEEGGGTGGGGGSSCCCCC
T ss_pred CHHHHcCCCCCCceEEcCcCcHHHHHHHHHHc-CCCcccccccC------------CceEEEEEcchhhhhhhcccccch
Confidence 566663 46789999999999999999999 89999999977 7999999999997443211 11
Q ss_pred ------ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 496 ------NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 496 ------~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
...+.+.|.+++.++.+++++.|+++.|. .++.+.+||+|+ ++.+|.++..++.
T Consensus 77 ~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~-~~~~~~l~Vvd~~g~l~GiVt~~dii 137 (145)
T d2v8qe1 77 DVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLV-EAEVHRLVVVDEHDVVKGIVSLSDIL 137 (145)
T ss_dssp SSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHH-HHTCSEEEEECTTSBEEEEEEHHHHH
T ss_pred hhhhhhccchhhhccCCCeEECCCCcHHHHHHHHH-HcCceEEEEEccCCEEEEEEEHHHHH
Confidence 23556678889999999999999999995 467878888865 5667888777754
|
| >d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein VC0737 species: Vibrio cholerae [TaxId: 666]
Probab=98.88 E-value=4.8e-11 Score=109.33 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=88.8
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCC-CcccccccCchhhcCCCCC
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRR-PSRFEVTPAPDLLRGNPHG 574 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~-~sr~~v~~~~~~l~~~~~~ 574 (704)
.+|+|+|++++.++++|+++.||.+.|. .++...+||+|+ +..+|.++.+++...... ..+...
T Consensus 2 i~v~diM~~~~~~v~~~~tl~~a~~~m~-~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~~~------------- 67 (139)
T d2o16a3 2 IKVEDMMTRHPHTLLRTHTLNDAKHLME-ALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQ------------- 67 (139)
T ss_dssp CBGGGTSEESCCCBCTTSBHHHHHHHHH-HHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC-----------------
T ss_pred EEHHHhCcCCCeEECCcCCHHHHHHHHH-HcCCCeeeeecccccccccccHHHHHHHHHhhhhhhhc-------------
Confidence 3689999999999999999999999995 466778888875 566888888886543211 001000
Q ss_pred CCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 575 VSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..... ...+..++|+ ++.+++|++++.++...|...+++.+ ||+|+ |+++|++|+
T Consensus 68 ----~~~~~-~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVvd~-~~lvGiit~ 123 (139)
T d2o16a3 68 ----GDSLA-FETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCL--PVVAK-DVLVGIITD 123 (139)
T ss_dssp ----------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCE--EEEET-TEEEEEECH
T ss_pred ----ccccc-cccchhHhhccccccccccchHHHHHHHHHHcCceEE--EEEEC-CEEEEEEEH
Confidence 00000 0114566777 88899999999999999999999887 99985 999999999
|
| >d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.87 E-value=6.4e-10 Score=103.49 Aligned_cols=119 Identities=13% Similarity=0.078 Sum_probs=92.4
Q ss_pred ccccccccc--cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc------
Q psy6631 420 NVYVEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS------ 491 (704)
Q Consensus 420 ~~~V~diM~--~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~------ 491 (704)
..+++|+|. .+++++..+++++||.+.|.++ +.+++||+|++ .++++|+++..|++....
T Consensus 12 ~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~-~~~~~pVv~~~-----------~~~~vG~is~~Dl~~~~~~~~~~~ 79 (159)
T d2v8qe2 12 SHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTN-GVRAAPLWDSK-----------KQSFVGMLTITDFINILHRYYKSA 79 (159)
T ss_dssp HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHH-TCSEEEEEETT-----------TTEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCEEEeECCCCCceEEEcCCCcHHHHHHHHHHc-CCCceeEEECC-----------CCcEEEEEEHHHHHHHHHhccccc
Confidence 346999995 5688999999999999999999 89999999754 168999999999863211
Q ss_pred -----------ccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhh
Q psy6631 492 -----------SGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREE 551 (704)
Q Consensus 492 -----------~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~ 551 (704)
.......+.++|.+++++++|++++.++++.|.+ .+...+||+|+ ++.+|.++.+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~-~~~~~v~Vvd~~~g~~~GivT~~dilk 151 (159)
T d2v8qe2 80 LVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIR-NKIHRLPVIDPESGNTLYILTHKRILK 151 (159)
T ss_dssp TTTCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHH-HTCSCEEEECTTTCCEEEEECHHHHHH
T ss_pred cchhhhhhhhhcccccceeeeeeccceEEECCCCcHHHHHHHHHH-hCCeEEEEEECCCCeEEEEEeHHHHHH
Confidence 0112245578999999999999999999999964 45666777753 45678888777643
|
| >d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.86 E-value=2.8e-10 Score=103.13 Aligned_cols=120 Identities=7% Similarity=0.017 Sum_probs=92.0
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCc-hhhcCCCCCCC
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAP-DLLRGNPHGVS 576 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~-~~l~~~~~~~~ 576 (704)
+|+|+|+++++++++++++.||.+.| +.++...+||+++ +.+|.++..+............-.... ..+.
T Consensus 2 ~V~~lM~~~~~~v~~~~tl~~a~~~m-~~~~~~~l~V~d~-~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 72 (135)
T d3ddja2 2 NIETLMIKNPPILSKEDRLGSAFKKI-NEGGIGRIIVANE-KIEGLLTTRDLLSTVESYCKDSCSQGDLYHIS------- 72 (135)
T ss_dssp SGGGTCEESCCEECTTSBHHHHHHHT-TGGGCCEEEEESS-SEEEEEEHHHHHGGGTTCC---CCHHHHHHHH-------
T ss_pred EeeEEeeCCCeEECCCCcHHHHHHHH-HHhCCeEEEEEec-ceeceeeccchhhhhccccccchhhhhccccc-------
Confidence 68999999999999999999999999 5577778888875 578888888766544322211111100 0000
Q ss_pred CCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 577 ASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+.+..++|+ ++.++.+++++.++...|...+++++ ||||++|+++|+||+
T Consensus 73 ---------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~l--pVvd~~g~lvGiit~ 123 (135)
T d3ddja2 73 ---------TTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSL--PVVDINDKPVGIVTE 123 (135)
T ss_dssp ---------TSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEE--EEECTTSCEEEEEEH
T ss_pred ---------cCCHHHHhCCccceEEeccccchhhhhhhhcceeEE--EEEeCCCEEEEEEEH
Confidence 114667788 89999999999999999999999998 999999999999998
|
| >d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.86 E-value=2e-09 Score=99.74 Aligned_cols=109 Identities=10% Similarity=0.081 Sum_probs=87.0
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc---cccccccccccc--
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS---SGIYNVYVEDFM-- 503 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~---~~~~~~~V~dvM-- 503 (704)
++++++.+++++.|+++.|.++ +++.+||+|++ ++++|+++..|++.... ......++.++|
T Consensus 12 ~~vv~v~~~~~v~~a~~~m~~~-~~~~lpVvd~~------------~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~ 78 (153)
T d2ooxe2 12 SNLATASMETKVYDVIKMLAEK-NISAVPIVNSE------------GTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLK 78 (153)
T ss_dssp SSCCCBCTTSBHHHHHHHHHHT-TCSEEEEECGG------------GBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHT
T ss_pred CCCeEEeCcCcHHHHHHHHHHc-CcceEeeeccc------------ceEEEEEEeeeeeehhccccccccccchhhheee
Confidence 5789999999999999999999 89999999977 79999999999874322 222344555555
Q ss_pred ----ccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh
Q psy6631 504 ----VRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE 551 (704)
Q Consensus 504 ----~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~ 551 (704)
.+++.++.+++++.++.+.|. ..+...+||+|+ ++.+|.+++.+...
T Consensus 79 ~~~~~~~~~~v~~~~~l~~~~~~m~-~~~~~~l~Vvd~~~~lvGivT~~Dil~ 130 (153)
T d2ooxe2 79 RPANFDGVHTCRATDRLDGIFDAIK-HSRVHRLFVVDENLKLEGILSLADILN 130 (153)
T ss_dssp SCCCSSCCCEECTTCBHHHHHHHHH-HSCCSEEEEECTTCBEEEEEEHHHHHH
T ss_pred eecccCCCeEECCCCcHHHHHHhhh-hceeeEEEEEcCCCEEEEEEEHHHHHH
Confidence 456678999999999999995 467778888865 66688888877643
|
| >d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Nuclear protein SNF4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.86 E-value=9.3e-10 Score=100.51 Aligned_cols=112 Identities=10% Similarity=0.021 Sum_probs=84.3
Q ss_pred cccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc---cc------cc
Q psy6631 425 DFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS---SG------IY 495 (704)
Q Consensus 425 diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~---~~------~~ 495 (704)
.+|.+++.++.+++++.||++.|.++ +++.+||+|++ ++++|+|+..|++.... .. ..
T Consensus 13 ~~~~~~v~tv~~~~~v~~a~~~m~~~-~~~~ipVvd~~------------~~~vG~it~~Di~~~~~~~~~~~~~~~~~~ 79 (140)
T d2nyca1 13 IITQDNMKSCQMTTPVIDVIQMLTQG-RVSSVPIIDEN------------GYLINVYEAYDVLGLIKGGIYNDLSLSVGE 79 (140)
T ss_dssp CCBCSSCCCBCTTSBHHHHHHHHHHH-TCSEEEEECTT------------CBEEEEEEHHHHHHHHHTC----CCSBHHH
T ss_pred CccCCCCEEEcCcCcHHHHHHHHHHc-CCcEEEEEecC------------CeEcceehhhHHHHHHhhccccccccchhh
Confidence 46788999999999999999999999 89999999977 78999999999874311 11 11
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeeccc-CCCceEEeehHHHh
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE-SSGKFEQMEIKRRE 550 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~-~~~~~~~i~~~~~~ 550 (704)
.......|..++.++.+++++.++++.|. ..+...+||+| +++.+|.++..|..
T Consensus 80 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~-~~~~~~l~VVd~~~~l~GiIt~~Dii 134 (140)
T d2nyca1 80 ALMRRSDDFEGVYTCTKNDKLSTIMDNIR-KARVHRFFVVDDVGRLVGVLTLSDIL 134 (140)
T ss_dssp HHHHCC------CEECTTSBHHHHHHHHH-HHTCSEEEEECTTSBEEEEEEHHHHH
T ss_pred hhhhhhhcccccEEECCCCcHHHHHHHHH-hcCeeEEEEEeCCCeEEEEEEHHHHH
Confidence 12334566777889999999999999995 57777888886 46678877777753
|
| >d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein NE2398 species: Nitrosomonas europaea [TaxId: 915]
Probab=98.85 E-value=3.3e-10 Score=102.08 Aligned_cols=116 Identities=8% Similarity=-0.007 Sum_probs=91.1
Q ss_pred ccccccc---cCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCC
Q psy6631 498 YVEDFMV---RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHG 574 (704)
Q Consensus 498 ~V~dvM~---~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~ 574 (704)
+|+|+|+ +++.++++++++.||.+.|.+ ++...+||+++++.+|.+++++...... .. +.
T Consensus 3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~-~~~~~vpV~~~~~~vGiit~~Di~~~~~-------~~-----~~---- 65 (127)
T d2rc3a1 3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAA-DNIGALLVMKDEKLVGILTERDFSRKSY-------LL-----DK---- 65 (127)
T ss_dssp BHHHHHHHHCCCCCEECTTSBHHHHHHHHHH-HTCSEEEEEETTEEEEEEEHHHHHHHGG-------GS-----SS----
T ss_pred cHHHHHccCCCccEEECCcCcHHHHHHHHHH-cCCCEEEEEECCeEEEEEEccchhhhhh-------hh-----cc----
Confidence 6899998 489999999999999999954 5677889999888899999988643220 00 00
Q ss_pred CCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH---HHHH
Q psy6631 575 VSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR---IRMA 641 (704)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr---~r~a 641 (704)
+ .......++|+ ++.++.|++++.++...|...+++++ ||+| +|+++|+||+ +|+.
T Consensus 66 ---~-----~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVvd-~~~~~GiIt~~Dil~~~ 125 (127)
T d2rc3a1 66 ---P-----VKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHL--PVLD-DGKVIGLLSIGDLVKDA 125 (127)
T ss_dssp ---C-----GGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEE--EEEE-TTEEEEEEEHHHHHHHH
T ss_pred ---c-----ccceeEeeeccceeEEeccCccHHHHHHHHHHCCCcEE--EEEE-CCEEEEEEEHHHHHHHH
Confidence 0 00113556777 88899999999999999999999987 9998 5999999998 6654
|
| >d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein MTH1622 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.84 E-value=1.3e-10 Score=103.72 Aligned_cols=115 Identities=16% Similarity=0.054 Sum_probs=90.3
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCC
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSA 577 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~ 577 (704)
+|+|+|+++++++++++++.|+.+.|.+ ++...+||.++++.+|.++++++........
T Consensus 1 kV~diM~~~~~~v~~~~sl~ea~~~~~~-~~~~~~~V~~~~~~~Gvit~~Di~~~l~~~~-------------------- 59 (120)
T d1pbja3 1 RVEDVMVTDVDTIDITASLEDVLRNYVE-NAKGSSVVVKEGVRVGIVTTWDVLEAIAEGD-------------------- 59 (120)
T ss_dssp CHHHHCBCSCCEEETTCBHHHHHHHHHH-HCCCEEEEEETTEEEEEEEHHHHHHHHHHTC--------------------
T ss_pred ChHHhCCCCCeEECCcCcHHHHHHHHHH-cCceEEEEEeCCcEEEEEEeeeccccccccc--------------------
Confidence 4789999999999999999999999954 5567888888888899998888654321000
Q ss_pred CCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH---HHHH
Q psy6631 578 SSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR---IRMA 641 (704)
Q Consensus 578 ~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr---~r~a 641 (704)
.. .+.+..++|+ ++.++.|++++.++...|...+++++ ||++ +|+++|++|+ +|+.
T Consensus 60 ~~-----~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l--~V~~-~~~l~Givt~~Dil~A~ 119 (120)
T d1pbja3 60 DL-----AEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRL--LVEE-DDEIIGVISATDILRAK 119 (120)
T ss_dssp CT-----TTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEE--EEEE-TTEEEEEEEHHHHHHHH
T ss_pred cc-----cceeEeeecccccccccchhHHHHHHHHHHHcCCeEE--EEEE-CCEEEEEEEHHHHHhcC
Confidence 00 0113556776 78889999999999999999999887 8765 6999999999 7764
|
| >d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.83 E-value=1.2e-10 Score=104.37 Aligned_cols=106 Identities=18% Similarity=0.152 Sum_probs=71.7
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCC
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVS 576 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~ 576 (704)
+|+|+|+++++++++|+++.|+.+.|. ..+...+||+|+ ++.+|.+++++ ++.+.+
T Consensus 2 ~v~diM~~~~v~v~~~~~v~~a~~~m~-~~~~~~~~Vvd~~~~~~G~it~~d------------l~~~~~---------- 58 (122)
T d2yzqa2 2 RVKTIMTQNPVTITLPATRNYALELFK-KYKVRSFPVVNKEGKLVGIISVKR------------ILVNPD---------- 58 (122)
T ss_dssp BHHHHSEESCCCEESSCC-------------CCEEEEECTTCCEEEEEESSC------------C---------------
T ss_pred CcccccCCCCEEECCcCcHHHHHHHHH-HcCCcEEEEEeccccchhhhhcch------------hhhhhc----------
Confidence 689999999999999999999999994 567778888876 45566554443 332110
Q ss_pred CCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 577 ASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.....++|. .+.+++|++++.++.+.|...+..++ ||||++|+++|++|+
T Consensus 59 ---------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l--pVvd~~~~liGiit~ 109 (122)
T d2yzqa2 59 ---------EEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRV--VVVDSKGKPVGILTV 109 (122)
T ss_dssp --------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEE--EEECTTSCEEEEEEH
T ss_pred ---------ccchhhccccceeecchhhHHHHHHHHHHHcCcEEE--EEEeCCCEEEEEEEH
Confidence 013455666 77889999999999999999999887 999999999999998
|
| >d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH0107 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.82 E-value=5.9e-10 Score=101.02 Aligned_cols=118 Identities=4% Similarity=0.008 Sum_probs=90.3
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCC
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHG 574 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~ 574 (704)
..+|+|+|++++.++++++++.|+.+.|. ..+...+||+|+ ++.+|.+++.+..........
T Consensus 4 ~~pV~~im~~~~~~v~~~~t~~~a~~~m~-~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~---------------- 66 (132)
T d2yzia1 4 KAPIKVYMTKKLLGVKPSTSVQEASRLMM-EFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL---------------- 66 (132)
T ss_dssp TSBGGGTCBCCCCEECTTSBHHHHHHHHH-HHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC----------------
T ss_pred CCcHHHHcCCCCeEECCcCcHHHHHHHHH-HcCCcEEEEecccceeeeeeeHHHHHHHHhhccC----------------
Confidence 35799999999999999999999999995 466668888876 466888888876433211100
Q ss_pred CCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH---HHHHH
Q psy6631 575 VSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR---IRMAF 642 (704)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr---~r~a~ 642 (704)
.. +.+..++|. ++.+++|++++.++...|...+++++ || +++|+++|++|+ +|+..
T Consensus 67 ----~~-----~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l--~V-~~~~~~vGivt~~Dil~a~~ 126 (132)
T d2yzia1 67 ----PY-----DIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI--LI-EEEGKIVGIFTLSDLLEASR 126 (132)
T ss_dssp ----CT-----TSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE--EE-EETTEEEEEEEHHHHHHHHH
T ss_pred ----cc-----ceeEeecccccccccCcchHHHHHHHHHHHcCCCEE--EE-EECCEEEEEEEHHHHHHHHH
Confidence 00 113556676 78889999999999999999999886 75 567999999999 55543
|
| >d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Rv2626c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.80 E-value=1.7e-10 Score=103.35 Aligned_cols=113 Identities=11% Similarity=0.158 Sum_probs=87.0
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCC
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGV 575 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~ 575 (704)
.+++|+|++++.++++++++.||++.|. .++...+||+++ ++.+|.+++++.....- . . +
T Consensus 1 tt~~diM~~~~~~v~~~~tl~~a~~~m~-~~~~~~~pVvd~~~~~~Giit~~Di~~~~~--------~------~---~- 61 (123)
T d1y5ha3 1 TTARDIMNAGVTCVGEHETLTAAAQYMR-EHDIGALPICGDDDRLHGMLTDRDIVIKGL--------A------A---G- 61 (123)
T ss_dssp CCHHHHSEETCCCEETTSBHHHHHHHHH-HHTCSEEEEECGGGBEEEEEEHHHHHHTTG--------G------G---T-
T ss_pred CCHHHhcCCCCcEECCcCcHHHHHHHHH-HcCCCceEEEeccchhhhhhhhhhHhhhhh--------h------c---C-
Confidence 3689999999999999999999999995 466777888865 56788888887532110 0 0 0
Q ss_pred CCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 576 SASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.+. ......++|+ ++.++.|++++.++.+.|...+++++ ||+| +|+++|+||+
T Consensus 62 -~~~-----~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l--pVvd-~~~lvGiit~ 115 (123)
T d1y5ha3 62 -LDP-----NTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRV--PVIS-EHRLVGIVTE 115 (123)
T ss_dssp -CCT-----TTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEE--EEEE-TTEEEEEEEH
T ss_pred -CCc-----ccceEEEEeeccceeeeecchHHHHHHHHHHcCceEE--EEEE-CCEEEEEEEH
Confidence 000 0012446676 78899999999999999999999987 9998 5899999998
|
| >d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Enterococcus faecalis [TaxId: 1351]
Probab=98.79 E-value=3.1e-10 Score=102.39 Aligned_cols=107 Identities=12% Similarity=0.106 Sum_probs=85.3
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcC----CCceeecccCC-CceEEeehHHHhhhcCCCcccccccCchhhcCCC
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENR----SLRVFPLVESS-GKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNP 572 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~----rl~Vvpvv~~~-~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~ 572 (704)
+++.+|++++.++++++++.||++.|.+.+ +...+||+|++ +.+|.+...+. .. ..
T Consensus 2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l------------~~------~~- 62 (127)
T d2ouxa2 2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDL------------IV------ND- 62 (127)
T ss_dssp BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHH------------TT------SC-
T ss_pred ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeecc------------cc------cc-
Confidence 578899999999999999999999996532 46678888764 45565554432 11 10
Q ss_pred CCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 573 HGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.+.+..++|+ ++.+++|++++.++...|...++.++ ||||++|+|+|+||+
T Consensus 63 ------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l--PVVD~~g~lvGiIt~ 114 (127)
T d2ouxa2 63 ------------DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAV--PVTDYDDHLLGIVTV 114 (127)
T ss_dssp ------------TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEE--EEECTTCBEEEEEEH
T ss_pred ------------ccEEhhhhccCCCccCCCCCCHHHHHHHHHHhCCEEE--EEEeCCCEEEEEEEH
Confidence 0124678888 88899999999999999999999987 999999999999998
|
| >d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.76 E-value=1.5e-09 Score=102.90 Aligned_cols=121 Identities=12% Similarity=-0.012 Sum_probs=92.7
Q ss_pred ccccccccccc--cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCC-----
Q psy6631 418 IYNVYVEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPS----- 490 (704)
Q Consensus 418 l~~~~V~diM~--~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~----- 490 (704)
|...++.|+|. .+++++.+++++++|.+.|.++ +++++||+|++ .++++|+++..|++...
T Consensus 17 l~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~-~i~~lpVvd~~-----------~~~~vGiis~~Di~~~l~~~~~ 84 (179)
T d2ooxe1 17 IRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLN-NIVSAPLWDSE-----------ANKFAGLLTMADFVNVIKYYYQ 84 (179)
T ss_dssp HHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHH-TCSCEEEEETT-----------TTEEEEEECHHHHHHHHHHHHH
T ss_pred HcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHc-CCCeEEEEeCC-----------CCeeEEEEeechHHHHHHhccc
Confidence 34567999996 5789999999999999999999 89999999854 16899999999986310
Q ss_pred ----cc------------cccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCC------CceEEeehHH
Q psy6631 491 ----SS------------GIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS------GKFEQMEIKR 548 (704)
Q Consensus 491 ----~~------------~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~------~~~~~i~~~~ 548 (704)
.. ......+.++|.++++++.+++++.|+++.|.+ ++...+||+|++ ..+|.++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~-~~~~~lpVvd~~g~~~~~~vvgiiT~~d 163 (179)
T d2ooxe1 85 SSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSK-SRARRIPLIDVDGETGSEMIVSVLTQYR 163 (179)
T ss_dssp HCSCGGGGGGGGGSBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHH-TTCSEEEEEEECTTTCCEEEEEEEEHHH
T ss_pred cccchhhhhhhhccchhhhcccceeeeecccCceEECCCCcHHHHHHHhhh-cCceEEEEEecCCCcCCCcEEEEEeHHH
Confidence 00 011234567899999999999999999999954 556667777642 3467777776
Q ss_pred Hhh
Q psy6631 549 REE 551 (704)
Q Consensus 549 ~~~ 551 (704)
+.+
T Consensus 164 Ilk 166 (179)
T d2ooxe1 164 ILK 166 (179)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0892, CBS tandem species: Thermotoga maritima [TaxId: 2336]
Probab=98.76 E-value=1.2e-09 Score=97.42 Aligned_cols=106 Identities=12% Similarity=0.063 Sum_probs=85.0
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCC
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVS 576 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~ 576 (704)
.|+++|+++++++++++++.|+.+.|.+ .+...+||+++ ++.+|.+++++......
T Consensus 2 ~v~~~m~~~~~~v~~~~tv~ea~~~m~~-~~~~~v~Vvd~~~~~~Gii~~~dl~~~~~---------------------- 58 (121)
T d1vr9a3 2 KVKKWVTQDFPMVEESATVRECLHRMRQ-YQTNECIVKDREGHFRGVVNKEDLLDLDL---------------------- 58 (121)
T ss_dssp BGGGGCBSCSCEEETTCBHHHHHHHHHH-TTSSEEEEECTTSBEEEEEEGGGGTTSCT----------------------
T ss_pred CchhhhcCCCeEECCCCCHHHHHHhhhh-cCcEEEEEEeCCceeEEEeehhhhhhhhc----------------------
Confidence 6899999999999999999999999954 56677888864 56677777666421100
Q ss_pred CCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 577 ASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..+++. ++++++|++++.++...|...+...+ ||||++|+++|++|+
T Consensus 59 ---------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l--pVvde~g~~~Gvit~ 109 (121)
T d1vr9a3 59 ---------DSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYL--PVVDEEMRLKGAVSL 109 (121)
T ss_dssp ---------TSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEE--EEECTTCBEEEEEEH
T ss_pred ---------cccccccccCccEEECCCCCHHHHHHHHHhcCceee--eeECCCCeEEEEEEH
Confidence 013455565 77888999999999999999888887 999999999999999
|
| >d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PAE2072 species: Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.69 E-value=2.8e-09 Score=95.93 Aligned_cols=112 Identities=9% Similarity=0.048 Sum_probs=83.8
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeeccc---CCCceEEeehHHHhhhcCCCcccccccCchhhcCCCC
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE---SSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPH 573 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~---~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~ 573 (704)
.+|+|+|+++++++++++++.|+++.|.+ ++...+|+++ +++.+|.+++.+............
T Consensus 1 ~~V~dim~~~~v~v~~~~tl~ea~~~m~~-~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~------------- 66 (131)
T d2riha1 1 IRTSELLKRPPVSLPETATIREVATELAK-NRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLD------------- 66 (131)
T ss_dssp CBGGGGCCSCCEEEETTCBHHHHHHHHHH-HTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTT-------------
T ss_pred CCHHHhccCCCEEECCCCcHHHHHHHHHH-hCCCcEEEEEEcCCCEEEEEEeeeccccccccccccc-------------
Confidence 36899999999999999999999999954 5566777773 245578777777644321110000
Q ss_pred CCCCCCCCCCCCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 574 GVSASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
......+.++.++.|++++.++...|...+++++ ||||++|+++|++|+
T Consensus 67 -------------~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~l--pVvd~~g~l~Giit~ 115 (131)
T d2riha1 67 -------------GPAMPIANSPITVLDTDPVHVAAEKMRRHNIRHV--VVVNKNGELVGVLSI 115 (131)
T ss_dssp -------------SBSGGGCBCCCEEETTSBHHHHHHHHHHHTCSEE--EEECTTSCEEEEEEH
T ss_pred -------------cccccccccceeEeeecchHHHHHHHHHCCeEEE--EEEcCCCeEEEEEEH
Confidence 0112223366778999999999999999999987 999999999999998
|
| >d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.67 E-value=1.8e-09 Score=98.36 Aligned_cols=118 Identities=11% Similarity=0.203 Sum_probs=89.1
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCC-CcccccccCchhhcCCCCC
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRR-PSRFEVTPAPDLLRGNPHG 574 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~-~sr~~v~~~~~~l~~~~~~ 574 (704)
.+|+++|++++.++++|+++.||.+.|.+ .+...+||+++ ++.+|.++..+....... ....... ...
T Consensus 2 ~~V~~iMt~~v~~v~~~~tl~~a~~~m~~-~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~~~----~~~----- 71 (141)
T d3ddja1 2 FPVKVFMSTKVQTIYKEVRLDQAVKLMLR-RGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPD----YFY----- 71 (141)
T ss_dssp CBHHHHSBCSCCCEETTSBHHHHHHHHHH-HTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTH----HHH-----
T ss_pred EeeHHhCcCCCeEEcCcCcHHHHHHHHHH-cCCCeeecccccCccccccccccchhhhhccccccccc----ccc-----
Confidence 37899999999999999999999999954 56667888875 556788888775432210 0000000 000
Q ss_pred CCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 575 VSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..++|+ ++.++.|++++.++...|...+++++ ||||++|+++|+||+
T Consensus 72 -----------~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l--~Vvd~~~~~iGiIt~ 122 (141)
T d3ddja1 72 -----------GKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSL--LILNKDNTIRGIITE 122 (141)
T ss_dssp -----------TCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEE--EEECTTSCEEEEEEH
T ss_pred -----------CCCHHHHhCcccccccccchhhHHHHHHHHcCCCEE--EEEccCCEEEEEEEH
Confidence 013566777 78889999999999999999999887 999999999999999
|
| >d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.66 E-value=1.9e-09 Score=96.73 Aligned_cols=103 Identities=8% Similarity=0.086 Sum_probs=79.7
Q ss_pred cccCceEEeCCCCHHHHHHHhHhcCCCceeecccC---CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCC
Q psy6631 503 MVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES---SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASS 579 (704)
Q Consensus 503 M~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~---~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~ 579 (704)
|.+++.+++|++++.||+++|. .++...+||+|+ ++.+|.+++++....... .. .
T Consensus 3 mi~dpvtv~~~~tv~~a~~~m~-~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~------------------~~-~-- 60 (126)
T d1zfja4 3 VIIDPFFLTPEHKVSEAEELMQ-RYRISGVPIVETLANRKLVGIITNRDMRFISDY------------------NA-P-- 60 (126)
T ss_dssp TSSSCCCBCSSSBHHHHHHHHH-HTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCS------------------SS-B--
T ss_pred CEeCceEECCCCCHHHHHHHHH-HhCCCcEEEEeeccCCeEEEEeEHHHHHHhhcc------------------CC-c--
Confidence 6678899999999999999995 466778899874 456788888775322100 00 0
Q ss_pred CCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 580 DNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 580 ~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.....++ ++.++.|++++.+++..|....++.+ ||||++|+++|+||+
T Consensus 61 --------~~~~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~l--pVVd~~g~lvGiiT~ 109 (126)
T d1zfja4 61 --------ISEHMTSEHLVTAAVGTDLETAERILHEHRIEKL--PLVDNSGRLSGLITI 109 (126)
T ss_dssp --------TTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEE--EEECTTSBEEEEEEH
T ss_pred --------eeeeeeccceeecCCCCCHHHHHHHHHhcCCcEE--EEEcCCCeEEEEEEH
Confidence 1122344 67788999999999999999999887 999999999999999
|
| >d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein YkuL species: Bacillus subtilis [TaxId: 1423]
Probab=98.65 E-value=3.3e-09 Score=95.79 Aligned_cols=116 Identities=11% Similarity=0.045 Sum_probs=85.9
Q ss_pred ccccccc--ccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCC
Q psy6631 497 VYVEDFM--VRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPH 573 (704)
Q Consensus 497 ~~V~dvM--~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~ 573 (704)
.+|+++| .+++.++.+|+++.||.+.|. ..+...+||+|+ ++.+|.++..+............-..
T Consensus 2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~-~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~~~~~~---------- 70 (132)
T d1yava3 2 ATVGQFMIEADKVAHVQVGNNLEHALLVLT-KTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEK---------- 70 (132)
T ss_dssp CBHHHHSEEGGGSCCEETTCBHHHHHHHHH-HHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGG----------
T ss_pred CCHHHccccccceEEEcCCCCHHHHHHHHH-hhCCCceEEeecccccccEEEcchhHHHhhccccccccc----------
Confidence 5789999 578999999999999999995 466777888865 56788888888754432111111000
Q ss_pred CCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 574 GVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.. ..+..++|. ++..+.|++++.++...|....+ +||||++|+++|+||+
T Consensus 71 --------~~--~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~----l~Vvd~~~~~~Givt~ 121 (132)
T d1yava3 71 --------LD--QITVEEVMLTDIPRLHINDPIMKGFGMVINNGF----VCVENDEQVFEGIFTR 121 (132)
T ss_dssp --------TT--TSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE----EEEECTTCBEEEEEEH
T ss_pred --------cc--cccccccccccccccccchhHHHHHHHHHhCCE----EEEEccCCEEEEEEEH
Confidence 00 013455666 78889999999999999876543 3999999999999998
|
| >d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0935 species: Thermotoga maritima [TaxId: 2336]
Probab=98.56 E-value=5.4e-09 Score=95.49 Aligned_cols=127 Identities=8% Similarity=0.018 Sum_probs=88.6
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCC
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVS 576 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~ 576 (704)
.|.++|++++.++++|+++.|+++.|. .++...+||+|+ ++.+|.++..++............ ...+.....
T Consensus 5 ~v~~~m~~~p~~v~~~~~v~~a~~~m~-~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~-~~~~~~~~~----- 77 (145)
T d1o50a3 5 DVCKLISLKPTVVEEDTPIEEIVDRIL-EDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFI-PKEELIRSS----- 77 (145)
T ss_dssp HHTTSSCCCCEEECTTCBHHHHHHHHH-HSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCC-C-------C-----
T ss_pred EhHHhCCCCCEEECCcCcHHHHHHHHH-HcCCceEEEeccCcceeeeeccchhhhhhhccccccc-chhHHHHhh-----
Confidence 467889999999999999999999995 455667777764 667899998887543311111110 000011100
Q ss_pred CCCCCCCCCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 577 ASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
...... ....++|..+++++|++++.++...|...+.+++ ||||++|+++|+||+
T Consensus 78 --~~~~~~--~~~~~~~~~~~~i~~~~~l~~a~~~m~~~~i~~l--pVVd~~g~i~Gvit~ 132 (145)
T d1o50a3 78 --MKRLIA--KNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEM--PVVDEKGEIVGDLNS 132 (145)
T ss_dssp --CCCCSS--CBHHHHCBCCCCBCTTSBHHHHHHHHHHHTCSEE--EEECTTSCEEEEEEH
T ss_pred --hhhccc--cCHHHHcCCCEEEcCCCCHHHHHHHHHHcCceEE--EEEeCCCeEEEEEEH
Confidence 001111 1344556677889999999999999999999987 999999999999998
|
| >d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.52 E-value=2.9e-09 Score=94.93 Aligned_cols=106 Identities=8% Similarity=0.017 Sum_probs=52.1
Q ss_pred cccCceEEeCCCCHHHHHHHhHhcCCCceeecccC----CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCC
Q psy6631 503 MVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES----SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSAS 578 (704)
Q Consensus 503 M~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~----~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~ 578 (704)
|.+++.+++|++++.||.++|. .+++.-+||+|+ ++.+|.+++++..... ..
T Consensus 2 m~~~pvtv~~~~tl~da~~~m~-~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~---------------~~-------- 57 (120)
T d1jr1a4 2 FITDPVVLSPKDRVRDVFEAKA-RHGFCGIPITDTGRMGSRLVGIISSRDIDFLK---------------EE-------- 57 (120)
T ss_dssp EECTTCC----CCCC--CCBC----------------CTTCCC-------------------------------------
T ss_pred cccCCEEECCcCCHHHHHHHHH-HhCCCeEEEeeccccCCeEeeeeeeeeeeehh---------------cc--------
Confidence 6678899999999999999995 456667888864 3445666555432110 00
Q ss_pred CCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 579 SDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 579 ~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+.+. .....+. ++.++.|++++.++...|...+++++ ||||++|+++|+|||
T Consensus 58 ~~~~~~---~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~l--pVVd~~~~lvGiiT~ 112 (120)
T d1jr1a4 58 EHDRFL---EEIMTKREDLVVAPAGITLKEANEILQRSKKGKL--PIVNENDELVAIIAR 112 (120)
T ss_dssp -----------CCSBTTTSCCEETTCCHHHHHHHTCSCC---C--EEEETTTEEEEEECH
T ss_pred ccCcee---EEEEeeccCceEECCCCCHHHHHHHHHHcCccEE--EEEcCCCEEEEEEEH
Confidence 000010 0111222 67889999999999999999999887 999999999999999
|
| >d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.40 E-value=6.3e-08 Score=89.37 Aligned_cols=118 Identities=11% Similarity=0.066 Sum_probs=85.7
Q ss_pred cccccc---ccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccc-cccCchhhcCCC
Q psy6631 498 YVEDFM---VRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFE-VTPAPDLLRGNP 572 (704)
Q Consensus 498 ~V~dvM---~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~-v~~~~~~l~~~~ 572 (704)
+++++| .+++.++.+|+++.||.+.|. .++...+||+++ ++.+|.+++.+.........+.. -.+..+.+..
T Consensus 2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~-~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~-- 78 (153)
T d2ooxe2 2 PLNQMTIGTWSNLATASMETKVYDVIKMLA-EKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLK-- 78 (153)
T ss_dssp BGGGTCCSBCSSCCCBCTTSBHHHHHHHHH-HTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHT--
T ss_pred CHHHcCCCCCCCCeEEeCcCcHHHHHHHHH-HcCcceEeeecccceEEEEEEeeeeeehhccccccccccchhhheee--
Confidence 345554 357999999999999999995 577778899876 56789999988755432111111 1111223222
Q ss_pred CCCCCCCCCCCCCCCCCCCcc-cCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 573 HGVSASSDNIPRTENLDGPQF-CPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
...+ .++.+++|++++.++...|...+.+++ ||||++|+++|+|||
T Consensus 79 -----------------~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l--~Vvd~~~~lvGivT~ 125 (153)
T d2ooxe2 79 -----------------RPANFDGVHTCRATDRLDGIFDAIKHSRVHRL--FVVDENLKLEGILSL 125 (153)
T ss_dssp -----------------SCCCSSCCCEECTTCBHHHHHHHHHHSCCSEE--EEECTTCBEEEEEEH
T ss_pred -----------------eecccCCCeEECCCCcHHHHHHhhhhceeeEE--EEEcCCCEEEEEEEH
Confidence 1122 266788999999999999999999987 999999999999999
|
| >d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.38 E-value=8.7e-08 Score=87.36 Aligned_cols=119 Identities=8% Similarity=0.086 Sum_probs=83.8
Q ss_pred cccccc---cccCceEEeCCCCHHHHHHHhHhcCCCceeecccCC-CceEEeehHHHhhhcCCCccccc-ccCchhhcCC
Q psy6631 497 VYVEDF---MVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS-GKFEQMEIKRREERQRRPSRFEV-TPAPDLLRGN 571 (704)
Q Consensus 497 ~~V~dv---M~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~-~~~~~i~~~~~~~~~~~~sr~~v-~~~~~~l~~~ 571 (704)
.+++|+ +.+++.++++++++.||.+.|. .++...+||++++ +.+|.++..+............. .+..+.
T Consensus 9 ~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~-~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~---- 83 (145)
T d2v8qe1 9 KSLEELQIGTYANIAMVRTTTPVYVALGIFV-QHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKA---- 83 (145)
T ss_dssp SBHHHHTCSBCSSCCCEETTCBHHHHHHHHH-HHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHH----
T ss_pred CCHHHHcCCCCCCceEEcCcCcHHHHHHHHH-HcCCCcccccccCCceEEEEEcchhhhhhhcccccchhhhhhhc----
Confidence 455555 3467999999999999999995 5667789999864 45787877776443321110000 000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 572 PHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
......+. ++.++.|++++.++.+.|...+.+++ ||||++|+++|+||+
T Consensus 84 ---------------~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l--~Vvd~~g~l~GiVt~ 133 (145)
T d2v8qe1 84 ---------------LQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRL--VVVDEHDVVKGIVSL 133 (145)
T ss_dssp ---------------GGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEE--EEECTTSBEEEEEEH
T ss_pred ---------------cchhhhccCCCeEECCCCcHHHHHHHHHHcCceEE--EEEccCCEEEEEEEH
Confidence 01223344 77789999999999999988888887 999999999999998
|
| >d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein 5, ClC-5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=4.1e-08 Score=92.16 Aligned_cols=143 Identities=11% Similarity=0.045 Sum_probs=90.5
Q ss_pred cccccccccC------ceEEeCCCCHHHHHHHhHhcCCCceeeccc---CCCceEEeehHHHhhhcC---CCcccccccC
Q psy6631 497 VYVEDFMVRD------VKYIWNNMTYRDLKNLLKENRSLRVFPLVE---SSGKFEQMEIKRREERQR---RPSRFEVTPA 564 (704)
Q Consensus 497 ~~V~dvM~~~------v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~---~~~~~~~i~~~~~~~~~~---~~sr~~v~~~ 564 (704)
..++|+|.+. ..++.+++++.|+.++|.+ .+..-+||++ ++..+|.++++++..... ..........
T Consensus 3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~-~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~ 81 (169)
T d2j9la1 3 TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISE-TTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTS 81 (169)
T ss_dssp CBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHH-CCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTC
T ss_pred cchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHH-cCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccch
Confidence 3467888642 2446788899999999954 5555667773 356799999988864331 1111111111
Q ss_pred chhhcCCCCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH--HHHH
Q psy6631 565 PDLLRGNPHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR--IRMA 641 (704)
Q Consensus 565 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr--~r~a 641 (704)
...+.. ........... .....++|. .++++.|++++.++.+.|...+.+.+ ||+ ++|+++|+||| +-.+
T Consensus 82 ~~~~~~--~~~~~~~~~~~--~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l--~V~-d~g~lvGiIt~~Dil~~ 154 (169)
T d2j9la1 82 IIYFTE--HSPPLPPYTPP--TLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQC--LVT-HNGRLLGIITKKDVLKH 154 (169)
T ss_dssp EEECSS--SCCCCCTTCCC--CEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEE--EEE-ETTEEEEEEEHHHHHHH
T ss_pred hhhhcc--cchhhhhcccc--ccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEE--EEE-ECCEEEEEEEHHHHHHH
Confidence 111111 01101111111 124677888 89999999999999999999999886 655 58999999999 5455
Q ss_pred HHHHhc
Q psy6631 642 FEAIFH 647 (704)
Q Consensus 642 ~e~~~~ 647 (704)
+..+.+
T Consensus 155 l~~~~~ 160 (169)
T d2j9la1 155 IAQMAN 160 (169)
T ss_dssp HHHHCC
T ss_pred HHHHhc
Confidence 666544
|
| >d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.31 E-value=2.1e-08 Score=92.96 Aligned_cols=129 Identities=12% Similarity=0.095 Sum_probs=88.9
Q ss_pred ccccccccc--cCceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhcCCCcccccccCchhhcCC
Q psy6631 496 NVYVEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGN 571 (704)
Q Consensus 496 ~~~V~dvM~--~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~ 571 (704)
..++.|+|. .+++++..++++.||.+.|. .+++..+||+++ ++.+|.++..++........+....... ....
T Consensus 12 ~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~-~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~-~~~~- 88 (159)
T d2v8qe2 12 SHRCYDLIPTSSKLVVFDTSLQVKKAFFALV-TNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIY-ELEE- 88 (159)
T ss_dssp HSBGGGGSCSEEEEEEEETTSBHHHHHHHHH-HHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCC-CGGG-
T ss_pred CCEEEeECCCCCceEEEcCCCcHHHHHHHHH-HcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhh-hhhh-
Confidence 468899994 56889999999999999995 577888899864 4568999998875433211111111100 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCC-CCCcchHHHH
Q psy6631 572 PHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTP-YTTVTGAESR 637 (704)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~-~g~l~G~vtr 637 (704)
...........+.|. +++++.|++++.++...|...+.+++ ||+|+ +|+++|+||+
T Consensus 89 --------~~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v--~Vvd~~~g~~~GivT~ 146 (159)
T d2v8qe2 89 --------HKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRL--PVIDPESGNTLYILTH 146 (159)
T ss_dssp --------CBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCE--EEECTTTCCEEEEECH
T ss_pred --------hhcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEE--EEEECCCCeEEEEEeH
Confidence 000000012234555 88999999999999999999999997 99984 6899999998
|
| >d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Nuclear protein SNF4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.29 E-value=8.5e-08 Score=87.08 Aligned_cols=115 Identities=9% Similarity=0.012 Sum_probs=81.8
Q ss_pred cccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcc-cccccCchhhcCCCCCCCCC
Q psy6631 501 DFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSR-FEVTPAPDLLRGNPHGVSAS 578 (704)
Q Consensus 501 dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr-~~v~~~~~~l~~~~~~~~~~ 578 (704)
.+|.+++.++.+|+++.||.+.|. .++...+||+|+ ++.+|.+++.|.......... .......+.++.
T Consensus 13 ~~~~~~v~tv~~~~~v~~a~~~m~-~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~~-------- 83 (140)
T d2nyca1 13 IITQDNMKSCQMTTPVIDVIQMLT-QGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR-------- 83 (140)
T ss_dssp CCBCSSCCCBCTTSBHHHHHHHHH-HHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHHH--------
T ss_pred CccCCCCEEEcCcCcHHHHHHHHH-HcCCcEEEEEecCCeEcceehhhHHHHHHhhccccccccchhhhhhh--------
Confidence 357889999999999999999995 467778899875 566899999887654311111 111111112211
Q ss_pred CCCCCCCCCCCCCcc-cCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 579 SDNIPRTENLDGPQF-CPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 579 ~~~~~~~~~~~~~~~-~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
...+ .++..+.|++++.++...|...+++.+ ||||++|+++|+||+
T Consensus 84 -----------~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l--~VVd~~~~l~GiIt~ 130 (140)
T d2nyca1 84 -----------RSDDFEGVYTCTKNDKLSTIMDNIRKARVHRF--FVVDDVGRLVGVLTL 130 (140)
T ss_dssp -----------CC------CEECTTSBHHHHHHHHHHHTCSEE--EEECTTSBEEEEEEH
T ss_pred -----------hhhcccccEEECCCCcHHHHHHHHHhcCeeEE--EEEeCCCeEEEEEEH
Confidence 1112 256778999999999999999999887 999999999999998
|
| >d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Membrane and cell surface proteins and peptides fold: Clc chloride channel superfamily: Clc chloride channel family: Clc chloride channel domain: Clc chloride channel species: Escherichia coli [TaxId: 562]
Probab=98.24 E-value=1.6e-05 Score=85.67 Aligned_cols=187 Identities=15% Similarity=0.116 Sum_probs=119.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcc--hhHHHHHHHHHHHHHH-------hhhhhcccc
Q psy6631 162 DPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKN--RFLYPGIVVLLATSVS-------FPLGLGKYM 232 (704)
Q Consensus 162 ~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~--~~l~p~l~gllvg~l~-------fP~~~G~~~ 232 (704)
...-+.+.+++|+++|+.+.+|.....+...++... ........ .+..+.+++.+.+.+. -|..-|.+
T Consensus 16 ~l~~~~la~liGi~~gl~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~GsG- 92 (444)
T d1otsa_ 16 PLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGA--LVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSG- 92 (444)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhccccHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCC-
Confidence 356677788999999999999999888765443211 11111111 1222233333333321 14333332
Q ss_pred CCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHH
Q psy6631 233 AGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAF 312 (704)
Q Consensus 233 ~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~ 312 (704)
..++.+..++. .....+ -....|++.+.++.++|.+.|-=.|+.-+||++
T Consensus 93 ------ipev~~~l~~~--------------------~~~~~~----r~~~~k~~~~~~sl~~G~s~G~EGP~v~iga~i 142 (444)
T d1otsa_ 93 ------IPEIEGALEDQ--------------------RPVRWW----RVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNI 142 (444)
T ss_dssp ------HHHHHHHHTTC--------------------SCCCHH----HHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHH
T ss_pred ------HHHHHHHHhCC--------------------CCCccH----HHHHHHHHHHHHHHhcCCCccccccHHHHHHHH
Confidence 23333332210 011111 124679999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHhC-Cc----hhHHHHHHHHHHHHH
Q psy6631 313 GRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMTG-QI----THIIPVMIAVLISNA 386 (704)
Q Consensus 313 G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElTG-~~----~~~lPimia~~is~~ 386 (704)
|..++..+.. .. ..+--.+...|+||=++++-+ |++.++..+|... ++ ..+.|.++++++++.
T Consensus 143 ~~~l~~~~~~--~~---------~~~~r~l~~~GaaAglaa~F~aPlaG~lFa~E~l~~~~~~~~~~~~~~~~a~~~~~~ 211 (444)
T d1otsa_ 143 GRMVLDIFRL--KG---------DEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTI 211 (444)
T ss_dssp HHHHHHHTTC--CS---------HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh--hh---------HHhhHHHHHHHHHHHHhhccCCchhhhhhhhHHHhhcchHHHHHHHHHHhhhHHHhh
Confidence 9999986421 00 112346788999998888887 8999999999643 32 237899999999999
Q ss_pred HHhhcC
Q psy6631 387 VAALLQ 392 (704)
Q Consensus 387 va~~l~ 392 (704)
+...+.
T Consensus 212 ~~~~~~ 217 (444)
T d1otsa_ 212 MYRIFN 217 (444)
T ss_dssp HHHHHS
T ss_pred heeecc
Confidence 887663
|
| >d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=97.84 E-value=2.8e-07 Score=86.78 Aligned_cols=132 Identities=8% Similarity=-0.022 Sum_probs=88.9
Q ss_pred cccccccccc--cCceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhcCCCcccccccC--chhh
Q psy6631 495 YNVYVEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQRRPSRFEVTPA--PDLL 568 (704)
Q Consensus 495 ~~~~V~dvM~--~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~~~~sr~~v~~~--~~~l 568 (704)
...++.|+|. .++.++.+++++.||.+.|. .++...+||+++ ++.+|.++..|............-.+. .+..
T Consensus 18 ~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~-~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~~~~ 96 (179)
T d2ooxe1 18 RSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLT-LNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEID 96 (179)
T ss_dssp HHSBHHHHSCSEEEEEEEETTSBHHHHHHHHH-HHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGG
T ss_pred cCCEeeeeCCCCCcEEEEECcchHHHHHHHHH-HcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhhhhh
Confidence 3457889996 57899999999999999995 466777888874 457999999887543211000000000 0000
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCC-----CcchHHHH
Q psy6631 569 RGNPHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYT-----TVTGAESR 637 (704)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g-----~l~G~vtr 637 (704)
.. . ..... ........|. +++++.|++++.++...|...+.+++ ||||++| +++|++|+
T Consensus 97 ~~---~----~~~~~-~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~l--pVvd~~g~~~~~~vvgiiT~ 161 (179)
T d2ooxe1 97 KF---R----LLGLR-EVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRI--PLIDVDGETGSEMIVSVLTQ 161 (179)
T ss_dssp GS---B----HHHHH-HHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEE--EEEEECTTTCCEEEEEEEEH
T ss_pred cc---c----hhhhc-ccceeeeecccCceEECCCCcHHHHHHHhhhcCceEE--EEEecCCCcCCCcEEEEEeH
Confidence 00 0 00000 0011334455 88999999999999999999999998 9999886 58999998
|