Psyllid ID: psy6681

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------
MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTIEESRVTRGIGRCRHSSNFSNRQTPGNTNSIVDRSSREHFPHPQPCSCNLKLLGERMSKPRPHRPRWSATKKVRRFWDCLHLQRKNHRHIRTDQYAYQIAEIQQKQHKRASSVCSSENFSSSRSDSWKQNHHHCGIPMRLLDPKRRASSWLVTRKTSQDSNLSSSRNDSSGSANTASTSVSRISRSSNSSDRSKPRLTRQSAIVDDPDLPNSPARLTVRFLTTIPSAAETSVVNEEESFAILHPTPDASPAGSPQRKKKISLEEKQNSGV
ccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccccccccHHHHHHHHHHHHHHHHHHHHccEEEEccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccc
ccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccHcHHccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEccHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccHHHHHcHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccEcccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccEEcccccccccccccEEHHHHHcccccccccccHHHEEcccccccccccHccccccHHHcccccccccccccccccEEEHEEcccccc
MLGNGTVVFVLIFArskidvprfLVCNLAAADFFMGLYLGLLAVVDastlgefrmyaipwqmsagcQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLfgisdyrkyatclpfetttgVWSLTYIVFLMFINGVAFLILMGCYLKMYCairgsqawnsnDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTVFVlplnsccnpFLYAILTKQFKKDCVMICKTIEEsrvtrgigrcrhssnfsnrqtpgntnsivdrssrehfphpqpcscnlkllgermskprphrprwsatkkVRRFWDCLHLqrknhrhirtDQYAYQIAEIQQKQhkrassvcssenfsssrsdswkqnhhhcgipmrlldpkrrasswlvtrktsqdsnlsssrndssgsantastsvsrisrssnssdrskprltrqsaivddpdlpnsparLTVRFLTtipsaaetsvvneeesfailhptpdaspagspqrkkkiSLEEKQNSGV
MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTIeesrvtrgigrcrhssnfsnrqtpgntNSIVDRSSREHFPHPQPCSCNLKLlgermskprphrprwsatkkvrrfWDCLHlqrknhrhirTDQYAYQIAEIQQKQHKRASSVCSSENFSSSRSDSWKQNHHHCGIPMRLLDPKRRASSWLVtrktsqdsnlsssrndssgsantastsvsrisrssnssdrskprltrqsaivddpdlpnspARLTVRFLTTIPSAAETSVVNEEESFAIlhptpdaspagspqrkkkisleekqnsgv
MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTIEESRVTRGIGRCRHSSNFSNRQTPGNTNSIVDRSSREHFPHPQPCSCNLKLLGERMSKPRPHRPRWSATKKVRRFWDCLHLQRKNHRHIRTDQYAYQIAEIQQKQHKRAssvcssenfsssrsdsWKQNHHHCGIPMRLLDPKRRASSWLVTRKTsqdsnlsssrndssgsANTAstsvsrisrssnssdrskprLTRQSAIVDDPDLPNSPARLTVRFLTTIPSAAETSVVNEEESFAILHPTPDASPAGSPQRKKKISLEEKQNSGV
****GTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTIEESRVTRGIGRC*******************************************************ATKKVRRFWDCLHLQRKNHRHIRTDQYAYQIAEI*******************************CGI*******************************************************************************LTVRFLTTI**********************************************
MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYC*****************RMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKT******************************************************************************************************************************************************************************************************************************************************************************
MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTIEESRVTRGIGRCRHSSNFSNRQTPGNTNSIVD*********PQPCSCNLKLLGERM************TKKVRRFWDCLHLQRKNHRHIRTDQYAYQIAE******************************HHCGIPMRLLDPKRRASS**************************************************QSAIVDDPDLPNSPARLTVRFLTTIPSAAETSVVNEEESFAILHPTP************************
MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTIEESRV***************************************CSCNL***GERMSKPRPHRPRWSATKKVRRFWDCLHLQRKNHRHIRTDQYAYQIAEIQQKQH**************************CGIPMRLLDPKRRASSWLVTRKT**************************************PRLTRQSAIVDD**LPNSPARLTVRFLTTIP********************************KKI****K*****
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYRKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTIEESRVTRGIGRCRHSSNFSNRQTPGNTNSIVDRSSREHFPHPQPCSCNLKLLGERMSKPRPHRPRWSATKKVRRFWDCLHLQRKNHRHIRTDQYAYQIAEIQQKQHKRASSVCSSENFSSSRSDSWKQNHHHCGIPMRLLDPKRRASSWLVTRKTSQDSNLSSSRNDSSGSANTASTSVSRISRSSNSSDRSKPRLTRQSAIVDDPDLPNSPARLTVRFLTTIPSAAETSVVNEEESFAILHPTPDASPAGSPQRKKKISLEEKQNSGV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query537 2.2.26 [Sep-21-2011]
Q9BGN4763 Thyrotropin receptor OS=F N/A N/A 0.562 0.395 0.451 2e-71
P14763764 Thyrotropin receptor OS=C yes N/A 0.562 0.395 0.454 3e-71
P16473764 Thyrotropin receptor OS=H yes N/A 0.506 0.356 0.492 1e-70
P35409925 Probable glycoprotein hor N/A N/A 0.482 0.28 0.481 1e-70
P22888699 Lutropin-choriogonadotrop no N/A 0.489 0.376 0.483 1e-70
O02721676 Lutropin-choriogonadotrop no N/A 0.521 0.414 0.450 3e-70
P21463764 Thyrotropin receptor OS=R yes N/A 0.558 0.392 0.438 5e-70
Q90674366 Lutropin-choriogonadotrop no N/A 0.575 0.844 0.434 6e-70
P30730700 Lutropin-choriogonadotrop yes N/A 0.590 0.452 0.423 9e-70
Q8SPP9764 Thyrotropin receptor OS=S yes N/A 0.558 0.392 0.442 2e-69
>sp|Q9BGN4|TSHR_FELCA Thyrotropin receptor OS=Felis catus GN=TSHR PE=2 SV=1 Back     alignment and function desciption
 Score =  270 bits (691), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 143/317 (45%), Positives = 204/317 (64%), Gaps = 15/317 (4%)

Query: 1   MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPW 60
           +LGN  V+ +L+ +  K+ VPRFL+CNLA ADF MG+YL L+A VD  T  E+  +AI W
Sbjct: 428 LLGNVFVLIILLTSHYKLTVPRFLMCNLAFADFCMGMYLLLIASVDLYTHSEYYNHAIDW 487

Query: 61  QMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSF 120
           Q   GC  AGF +V ++ELSV+TL VITLER YAIT AM L++++ L+HA  IMV GW  
Sbjct: 488 QTGPGCNAAGFFTVFASELSVYTLTVITLERWYAITFAMRLDRKMRLRHAYAIMVGGWVC 547

Query: 121 AILMAVLPLFGISDYRKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCA 180
             L+A+LPL GIS Y K + CLP +T T + +L YI+ ++ +N VAF+I+  CY+K+Y  
Sbjct: 548 CFLLALLPLVGISSYAKVSICLPMDTETPL-ALAYIILVLLLNIVAFIIVCSCYVKIYIT 606

Query: 181 IRGSQAWNSN--DSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTVFV 238
           +R  Q +N+   D++IAKRMA+L+FTD +C  PI+  AL+A+    L+++  +KI  V  
Sbjct: 607 VRNPQ-YNTGDKDTKIAKRMAVLIFTDFMCMAPISFYALSALMNKPLITVTNSKILLVLF 665

Query: 239 LPLNSCCNPFLYAILTKQFKKDCVMICKTIEESRVTRGIGRCRHSSNFSNRQTPGNTNSI 298
            PLNSC NPFLYAI TK F++D  ++           GI + +  +    R +P N+  I
Sbjct: 666 YPLNSCANPFLYAIFTKTFQRDVFILLSKF-------GICKRQAQAYRGQRVSPKNSTGI 718

Query: 299 ----VDRSSREHFPHPQ 311
               V R+ R+  P+ Q
Sbjct: 719 QVQKVTRNMRQSLPNMQ 735
Receptor for thyrothropin. Plays a central role in controlling thyroid cell metabolism. The activity of this receptor is mediated by G proteins which activate adenylate cyclase. Also acts as a receptor for thyrostimulin (GPA2+GPB5).
Felis catus (taxid: 9685)
>sp|P14763|TSHR_CANFA Thyrotropin receptor OS=Canis familiaris GN=TSHR PE=2 SV=1 Back     alignment and function description
>sp|P16473|TSHR_HUMAN Thyrotropin receptor OS=Homo sapiens GN=TSHR PE=1 SV=2 Back     alignment and function description
>sp|P35409|GLHR_ANTEL Probable glycoprotein hormone G-protein coupled receptor OS=Anthopleura elegantissima PE=2 SV=1 Back     alignment and function description
>sp|P22888|LSHR_HUMAN Lutropin-choriogonadotropic hormone receptor OS=Homo sapiens GN=LHCGR PE=1 SV=4 Back     alignment and function description
>sp|O02721|LSHR_CALJA Lutropin-choriogonadotropic hormone receptor OS=Callithrix jacchus GN=LHCGR PE=2 SV=1 Back     alignment and function description
>sp|P21463|TSHR_RAT Thyrotropin receptor OS=Rattus norvegicus GN=Tshr PE=1 SV=2 Back     alignment and function description
>sp|Q90674|LSHR_CHICK Lutropin-choriogonadotropic hormone receptor (Fragment) OS=Gallus gallus GN=LHCGR PE=2 SV=1 Back     alignment and function description
>sp|P30730|LSHR_MOUSE Lutropin-choriogonadotropic hormone receptor OS=Mus musculus GN=Lhcgr PE=2 SV=1 Back     alignment and function description
>sp|Q8SPP9|TSHR_PIG Thyrotropin receptor OS=Sus scrofa GN=TSHR PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query537
91081109 1252 PREDICTED: similar to leucine-rich trans 0.940 0.403 0.794 0.0
328725142 1183 PREDICTED: leucine-rich repeat-containin 0.925 0.420 0.802 0.0
76160853 1103 bursicon receptor [Tribolium castaneum] 0.912 0.444 0.800 0.0
242005216 1218 class A rhodopsin-like G-protein coupled 0.936 0.412 0.741 0.0
340722725 1026 PREDICTED: leucine-rich repeat-containin 0.912 0.477 0.763 0.0
307184244 1073 Lutropin-choriogonadotropic hormone rece 0.925 0.463 0.762 0.0
380025194 951 PREDICTED: lutropin-choriogonadotropic h 0.916 0.517 0.762 0.0
332027378 1001 Lutropin-choriogonadotropic hormone rece 0.916 0.491 0.760 0.0
328791176 951 PREDICTED: lutropin-choriogonadotropic h 0.916 0.517 0.760 0.0
307203100 1001 Lutropin-choriogonadotropic hormone rece 0.919 0.493 0.746 0.0
>gi|91081109|ref|XP_975514.1| PREDICTED: similar to leucine-rich transmembrane protein, putative [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/516 (79%), Positives = 448/516 (86%), Gaps = 11/516 (2%)

Query: 1    MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPW 60
            MLGNGTVVFVLIF+R K+DVPRFLVCNLAAADFFMG+YLG LAVVDASTLGEFRMYAIPW
Sbjct: 691  MLGNGTVVFVLIFSRGKMDVPRFLVCNLAAADFFMGIYLGFLAVVDASTLGEFRMYAIPW 750

Query: 61   QMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSF 120
            QMSAGCQ++GF+ VLS+ELSV+TLAVITLERNYAITHAMHLNKRLSLKHAGYIM+CGWSF
Sbjct: 751  QMSAGCQLSGFLGVLSSELSVYTLAVITLERNYAITHAMHLNKRLSLKHAGYIMICGWSF 810

Query: 121  AILMAVLPLFGISDYRKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCA 180
            AI+M +LPLF +SDYRK+A CLPFET     SLTY+VFLMFINGVAFLILMGCYLKMYCA
Sbjct: 811  AIVMGLLPLFSVSDYRKFAVCLPFETKDAA-SLTYVVFLMFINGVAFLILMGCYLKMYCA 869

Query: 181  IRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTVFVLP 240
            IRGSQAWNSNDSRIAKRMALLVFTD LCW PIA  +LTA  G+ L+SLEQAK+FTVFVLP
Sbjct: 870  IRGSQAWNSNDSRIAKRMALLVFTDFLCWSPIAFFSLTAAFGLQLISLEQAKVFTVFVLP 929

Query: 241  LNSCCNPFLYAILTKQFKKDCVMICKTIEESRVTRGIGRCRHSSNFSNRQTPGNTNSIVD 300
            LNSCCNPFLYAILTKQFKKDCVMICK IEESRVTRGIGRCRHSSNFSNRQTP NTNS+ D
Sbjct: 930  LNSCCNPFLYAILTKQFKKDCVMICKAIEESRVTRGIGRCRHSSNFSNRQTPANTNSLAD 989

Query: 301  RSSREHFPHPQPCSCNLKLLGERMSKPRPHRPRWSATKK---VRRFWDCLHLQRKNHRHI 357
            RSSRE+  H   C+CN+KLLGER S P P   R + T++    +  W  L ++R+     
Sbjct: 990  RSSRENQNHVPTCTCNVKLLGER-SAPPPRTDRKTRTREWLLSKARW-LLCVRRQPRHRP 1047

Query: 358  RTDQYAYQIAEIQQKQHKRASSVCSSENFSSSRSDSWKQNHHHCGIPMRLLDPKRRASSW 417
            R+DQY YQIAEIQQKQHKRASSV SSENFSSSRSDSW+ N HHCGIP+RLLDPKRRASSW
Sbjct: 1048 RSDQYTYQIAEIQQKQHKRASSVSSSENFSSSRSDSWRHN-HHCGIPLRLLDPKRRASSW 1106

Query: 418  LVTRKTSQDSNLSSSRNDSSGSANTASTSVSRISRSSNSSD----RSKPRLTRQSAIVDD 473
            LVTRKTSQDSNLSSSRNDSSGSA TASTS  R+SRSS SS+    R+KPRLTRQSAI D+
Sbjct: 1107 LVTRKTSQDSNLSSSRNDSSGSATTASTSTWRMSRSSASSEPNRIRAKPRLTRQSAIQDE 1166

Query: 474  PDLPNSPARLTVRFLTTIPSAAETSVVNEEESFAIL 509
             DLP SP RLTVRFLTTIPSAAETS+  E+E  AIL
Sbjct: 1167 ADLPGSPGRLTVRFLTTIPSAAETSMQMEDEQPAIL 1202

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328725142|ref|XP_001948776.2| PREDICTED: leucine-rich repeat-containing G-protein coupled receptor 5-like isoform 1 [Acyrthosiphon pisum] gi|328725144|ref|XP_003248361.1| PREDICTED: leucine-rich repeat-containing G-protein coupled receptor 5-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|76160853|gb|ABA40401.1| bursicon receptor [Tribolium castaneum] gi|270006443|gb|EFA02891.1| hypothetical protein TcasGA2_TC008163 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|242005216|ref|XP_002423467.1| class A rhodopsin-like G-protein coupled receptor GPRrk, putative [Pediculus humanus corporis] gi|212506555|gb|EEB10729.1| class A rhodopsin-like G-protein coupled receptor GPRrk, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|340722725|ref|XP_003399753.1| PREDICTED: leucine-rich repeat-containing G-protein coupled receptor 6-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|307184244|gb|EFN70717.1| Lutropin-choriogonadotropic hormone receptor [Camponotus floridanus] Back     alignment and taxonomy information
>gi|380025194|ref|XP_003696362.1| PREDICTED: lutropin-choriogonadotropic hormone receptor-like [Apis florea] Back     alignment and taxonomy information
>gi|332027378|gb|EGI67461.1| Lutropin-choriogonadotropic hormone receptor [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|328791176|ref|XP_395206.4| PREDICTED: lutropin-choriogonadotropic hormone receptor-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|307203100|gb|EFN82280.1| Lutropin-choriogonadotropic hormone receptor [Harpegnathos saltator] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query537
FB|FBgn00032551360 rk "rickets" [Drosophila melan 0.744 0.294 0.573 1.1e-131
UNIPROTKB|F1NGD6694 LHCGR "Lutropin-choriogonadotr 0.528 0.409 0.467 2.4e-67
UNIPROTKB|Q90674366 LHCGR "Lutropin-choriogonadotr 0.588 0.863 0.441 6.5e-67
UNIPROTKB|F1PJI8764 TSHR "Thyrotropin receptor" [C 0.569 0.400 0.450 2.2e-66
UNIPROTKB|F1PJI9739 TSHR "Thyrotropin receptor" [C 0.569 0.414 0.450 2.2e-66
UNIPROTKB|E7ENI1672 LHCGR "Lutropin-choriogonadotr 0.489 0.391 0.483 2.2e-66
UNIPROTKB|E9PDH1637 LHCGR "Lutropin-choriogonadotr 0.489 0.412 0.483 2.2e-66
UNIPROTKB|P22888699 LHCGR "Lutropin-choriogonadotr 0.489 0.376 0.483 2.2e-66
UNIPROTKB|P14763764 TSHR "Thyrotropin receptor" [C 0.569 0.400 0.447 2.8e-66
UNIPROTKB|F5GYU5764 TSHR "Thyrotropin receptor" [H 0.487 0.342 0.507 4.5e-66
FB|FBgn0003255 rk "rickets" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1201 (427.8 bits), Expect = 1.1e-131, Sum P(2) = 1.1e-131
 Identities = 249/434 (57%), Positives = 308/434 (70%)

Query:     1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPW 60
             +LGNGTVVFVL+ +RSK+DVPRFLVCNLAAADFFMG+YLG+LA+VDA+TLGEFRM+AIPW
Sbjct:   768 LLGNGTVVFVLLCSRSKMDVPRFLVCNLAAADFFMGIYLGILAIVDAATLGEFRMFAIPW 827

Query:    61 QMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSF 120
             QMS  CQ++GF++VLS+ELSV+TLAVITLERNYAITHA+HLNKRLSLK AGYIM  GW F
Sbjct:   828 QMSVLCQLSGFLAVLSSELSVYTLAVITLERNYAITHAIHLNKRLSLKQAGYIMSVGWVF 887

Query:   121 AILMAVLPLFGISDYRKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCA 180
             A++MA++PL G+SDYRK+A CLPFETTTG  SLTY++ LMFING AFL LMGCYLKMY A
Sbjct:   888 ALIMALMPLVGVSDYRKFAVCLPFETTTGPASLTYVISLMFINGCAFLTLMGCYLKMYWA 947

Query:   181 IRGSQAWNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTVFVLP 240
             IRGSQAWN+NDSRIAKRMALLVFTD LCW PIA  ++TAI G+ L+SLEQAKIFTVFVLP
Sbjct:   948 IRGSQAWNTNDSRIAKRMALLVFTDFLCWSPIAFFSITAIFGLQLISLEQAKIFTVFVLP 1007

Query:   241 LNSCCNPFLYAILTKQFKKDCVMICKTIEESRVTRGIGRCRHSSNFSNRQTPGNTNSIVD 300
             LNSCCNPFLYAI+TKQFKKDCV +CK  EESRV  G G     +    ++  G+    + 
Sbjct:  1008 LNSCCNPFLYAIMTKQFKKDCVTLCKHFEESRVVGGGGPGGRGAVARTKR--GDLPPPLL 1065

Query:   301 RSSREHFPHPQPCSCNLKLLGERMSKPRPHRPRWSAT--KKVRRFWDCLHLQRKNHRHIR 358
              ++     HP  C C L++L   M  P  H+   + +  +++R F  C    R+  +  R
Sbjct:  1066 PAAA--VAHPPGCRC-LRMLPSEM--PNWHKMEQTPSMWQRLRTF--CCGENRRRRKQRR 1118

Query:   359 TDQ--------------YAYQIAEIQQKQHKRAXXXXXXXXXXXXXXXXWKQNHH----- 399
               Q              Y YQ AE++Q++  RA                W+         
Sbjct:  1119 QPQQRRQRAYTAAAANPYQYQFAELRQQRQNRASSISSENFCSSRSSS-WRHGPPSSAPV 1177

Query:   400 ---HCGIPMRLLDP 410
                +C +P+++L+P
Sbjct:  1178 PPGNCSMPLKMLEP 1191
GO:0004930 "G-protein coupled receptor activity" evidence=ISS;NAS
GO:0016021 "integral to membrane" evidence=IEA;ISS
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS
GO:0016500 "protein-hormone receptor activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=NAS
GO:0008188 "neuropeptide receptor activity" evidence=ISS
GO:0007564 "regulation of chitin-based cuticle tanning" evidence=IMP
GO:0001837 "epithelial to mesenchymal transition" evidence=IMP
UNIPROTKB|F1NGD6 LHCGR "Lutropin-choriogonadotropic hormone receptor" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q90674 LHCGR "Lutropin-choriogonadotropic hormone receptor" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PJI8 TSHR "Thyrotropin receptor" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PJI9 TSHR "Thyrotropin receptor" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E7ENI1 LHCGR "Lutropin-choriogonadotropic hormone receptor" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E9PDH1 LHCGR "Lutropin-choriogonadotropic hormone receptor" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P22888 LHCGR "Lutropin-choriogonadotropic hormone receptor" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P14763 TSHR "Thyrotropin receptor" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F5GYU5 TSHR "Thyrotropin receptor" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query537
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 3e-32
PHA03087335 PHA03087, PHA03087, G protein-coupled chemokine re 3e-12
PHA02834323 PHA02834, PHA02834, chemokine receptor-like protei 1e-07
PHA02638417 PHA02638, PHA02638, CC chemokine receptor-like pro 1e-05
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score =  123 bits (312), Expect = 3e-32
 Identities = 55/259 (21%), Positives = 109/259 (42%), Gaps = 25/259 (9%)

Query: 9   FVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMS-AGCQ 67
            V++  +         + NLA AD    L L   A+               W    A C+
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGG--------DWPFGDALCK 52

Query: 68  MAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVL 127
           + GF+ V++   S+  L  I+++R  AI H +   +  + + A  +++  W  A+L+++ 
Sbjct: 53  LVGFLFVVNGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLP 112

Query: 128 PLFGI----SDYRKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCAIRG 183
           PL        +     TCL             ++  +    +  L+++ CY  +   +R 
Sbjct: 113 PLLFSWLRTVEEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRK 172

Query: 184 S----------QAWNSNDSRIAKRMALLVFTDLLCWFPIALVA-LTAICGVHLV-SLEQA 231
                      +  +S + + AK + ++V   +LCW P  +V  L ++C + +   L  A
Sbjct: 173 RARSGASQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIWRLLPTA 232

Query: 232 KIFTVFVLPLNSCCNPFLY 250
            + T+++  +NSC NP +Y
Sbjct: 233 LLITLWLAYVNSCLNPIIY 251

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 537
KOG4219|consensus423 100.0
PHA03234338 DNA packaging protein UL33; Provisional 100.0
PHA03235409 DNA packaging protein UL33; Provisional 100.0
PHA02834323 chemokine receptor-like protein; Provisional 100.0
KOG4220|consensus503 100.0
PHA02638417 CC chemokine receptor-like protein; Provisional 100.0
PF00001257 7tm_1: 7 transmembrane receptor (rhodopsin family) 100.0
PHA03087335 G protein-coupled chemokine receptor-like protein; 100.0
KOG2087|consensus363 99.97
PF10320257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 99.86
PF10324318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 99.81
PF10328274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 99.63
PF10323283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 99.59
PF05462303 Dicty_CAR: Slime mold cyclic AMP receptor 99.58
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 99.33
PF10321313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 99.24
PF10317292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 99.02
PF10326307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 98.88
PF03402265 V1R: Vomeronasal organ pheromone receptor family, 98.81
PF02118275 Srg: Srg family chemoreceptor; InterPro: IPR000609 98.71
PF10292324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 98.66
PF11710201 Git3: G protein-coupled glucose receptor regulatin 98.65
KOG4193|consensus610 98.6
PF02101405 Ocular_alb: Ocular albinism type 1 protein; InterP 98.6
KOG4564|consensus473 98.36
PF10318302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 98.32
PF10316273 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep 98.27
PF10327303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 98.23
PF10319310 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept 98.12
PF00002242 7tm_2: 7 transmembrane receptor (Secretin family); 97.94
PF02117328 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept 97.8
PF03125365 Sre: C. elegans Sre G protein-coupled chemorecepto 97.66
PF04789305 DUF621: Protein of unknown function (DUF621); Inte 97.63
PF01534328 Frizzled: Frizzled/Smoothened family membrane regi 96.93
PF03383153 Serpentine_r_xa: Caenorhabditis serpentine recepto 96.27
PF1197076 Git3_C: G protein-coupled glucose receptor regulat 96.19
PF02076283 STE3: Pheromone A receptor; InterPro: IPR001499 G- 95.95
PF10322307 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept 95.65
KOG4289|consensus2531 94.43
PF06681226 DUF1182: Protein of unknown function (DUF1182); In 92.77
PF06454281 DUF1084: Protein of unknown function (DUF1084); In 89.07
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 86.14
PF02175236 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept 83.28
>KOG4219|consensus Back     alignment and domain information 
Probab=100.00  E-value=2e-40  Score=335.72  Aligned_cols=265  Identities=20%  Similarity=0.344  Sum_probs=218.1

Q ss_pred             CchHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc-ccchhhHHHHHHHHHH
Q psy6681           1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMS-AGCQMAGFMSVLSAEL   79 (537)
Q Consensus         1 LvGN~lVl~vi~~~k~lr~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g-~~C~v~~~l~~~~~~~   79 (537)
                      ++||++|++++..+|++|+.+|+||+|||+||++++++..++...+...        ..|.+| .+|++..|+..+...+
T Consensus        50 v~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~--------~~W~~G~f~C~f~nf~~itav~v  121 (423)
T KOG4219|consen   50 VVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALH--------QEWYFGSFYCRFVNFFPITAVFV  121 (423)
T ss_pred             HhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------hccccccceeeeccccchhhhhH
Confidence            5799999999999999999999999999999999999988887766643        349998 8999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeecc-------cCcceecccCCCC----
Q psy6681          80 SVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDY-------RKYATCLPFETTT----  148 (537)
Q Consensus        80 Sv~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~-------~~~~~C~~~~~~~----  148 (537)
                      |+++|++||+|||.||.||++  .+.+++.+++++++||++++++++|..+.....       .....|...+.+.    
T Consensus       122 SVfTlvAiA~DRy~AIi~Pl~--~r~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~~~~~pe~~~~~  199 (423)
T KOG4219|consen  122 SVFTLVAIAIDRYMAIIHPLQ--PRPSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVVCVTAWPEHVCPT  199 (423)
T ss_pred             hHHHHHHHHHHHHHHHhhhcc--cCCCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEEEEEecccccCCc
Confidence            999999999999999999998  448999999999999999999998776654321       1123443322221    


Q ss_pred             cch----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------cccccchhhhhhHHHHHHHHHHhhHHHHH
Q psy6681         149 GVW----SLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQ----------AWNSNDSRIAKRMALLVFTDLLCWFPIAL  214 (537)
Q Consensus       149 ~~~----~~~~~~~~~~~f~iP~liii~~Y~~I~~~lrk~~----------~~~~~~~r~~k~L~~ivliFllcwlP~~I  214 (537)
                      ...    +.+..++.++.+++|++++.++|..|.+++|+.+          ++.+.++|+.||+++++++|.+||+||++
T Consensus       200 ~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d~~~~~~kak~K~vkmliiVV~~FaicWlPyh~  279 (423)
T KOG4219|consen  200 ENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQDRKHEQLKAKKKVVKMLIIVVVIFAICWLPYHI  279 (423)
T ss_pred             chhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhchhhHHHHHHHHHHHHHHHHHHHHHHhccChhH
Confidence            111    1255667777799999999999999999999753          22356789999999999999999999999


Q ss_pred             HHHHHHHccc---ccchHHHHHHHHHHhhhhhhHHHHHHHhcchHHHHHHHHHHhccccccccc
Q psy6681         215 VALTAICGVH---LVSLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTIEESRVTR  275 (537)
Q Consensus       215 ~~il~~~~~~---~~~~~~l~~i~~~l~~lns~iNPiIY~~~nk~FR~~l~~l~~~~~~~r~~~  275 (537)
                      .+++.....+   .......+....|+++.|+++||+||+++|++||.+|++.|+||...+...
T Consensus       280 y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~cp~v~~~k  343 (423)
T KOG4219|consen  280 YFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWCPFVKGTK  343 (423)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhheeeeecccc
Confidence            9998765422   123556677889999999999999999999999999999999986444333

>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>KOG4564|consensus Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03125 Sre: C Back     alignment and domain information
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity Back     alignment and domain information
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ] Back     alignment and domain information
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4289|consensus Back     alignment and domain information
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans Back     alignment and domain information
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query537
2j4y_A349 Crystal Structure Of A Rhodopsin Stabilizing Mutant 1e-10
3c9m_A348 Structure Of A Mutant Bovine Rhodopsin In Hexagonal 1e-10
2x72_A349 Crystal Structure Of The Constitutively Active E113 1e-10
3oax_A349 Crystal Structure Of Bovine Rhodopsin With Beta-Ion 1e-10
1jfp_A348 Structure Of Bovine Rhodopsin (Dark Adapted) Length 1e-10
4a4m_A349 Crystal Structure Of The Light-Activated Constituti 2e-10
2ziy_A372 Crystal Structure Of Squid Rhodopsin Length = 372 9e-10
2z73_A448 Crystal Structure Of Squid Rhodopsin Length = 448 1e-09
3pwh_A329 Thermostabilised Adenosine A2a Receptor Length = 32 5e-07
3vg9_A326 Crystal Structure Of Human Adenosine A2a Receptor W 7e-07
4ea3_B434 Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI 1e-06
2ydo_A325 Thermostabilised Human A2a Receptor With Adenosine 2e-06
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349 Back     alignment and structure 
Iteration: 1

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 34/263 (12%)
Query: 17  KIDVP-RFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMSAGCQMAGFMSVL 75
           K+  P  +++ NLA AD FM ++ G    +  S  G F           GC + GF + L
Sbjct: 68  KLRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVF------GPTGCNLEGFFATL 120
Query: 76  SAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDY 135
             E+++++L V+ +ER   +   M  N R    HA   +   W  A+  A  PL G S Y
Sbjct: 121 GGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRY 179
Query: 136 ----------RKYATCLPFETTTGVWSLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQ 185
                       Y T  P E T     + Y+  + FI  +  +++  CY ++   ++ + 
Sbjct: 180 IPEGMQCSCGIDYYT--PHEETNNESFVIYMFVVHFI--IPLIVIFFCYGQLVFTVKEAA 235
Query: 186 AWNSN-------DSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVSLEQAKIFTV-- 236
           A           +  + + + ++V   L+CW P A VA       H  S       T+  
Sbjct: 236 AQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIF--THQGSCFGPIFMTIPA 293
Query: 237 FVLPLNSCCNPFLYAILTKQFKK 259
           F    ++  NP +Y ++ KQF+ 
Sbjct: 294 FFAKTSAVYNPVIYIMMNKQFRN 316
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348 Back     alignment and structure
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349 Back     alignment and structure
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349 Back     alignment and structure
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348 Back     alignment and structure
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349 Back     alignment and structure
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372 Back     alignment and structure
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448 Back     alignment and structure
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329 Back     alignment and structure
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326 Back     alignment and structure
>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434 Back     alignment and structure
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query537
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 6e-37
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 5e-36
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 4e-31
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 2e-29
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 2e-19
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 1e-06
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 1e-18
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 8e-18
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 2e-05
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 7e-15
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 9e-15
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 6e-04
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 1e-10
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 3e-06
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 3e-10
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 4e-04
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 8e-10
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 1e-05
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 9e-10
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 4e-04
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 2e-07
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
 Score =  139 bits (351), Expect = 6e-37
 Identities = 57/272 (20%), Positives = 109/272 (40%), Gaps = 21/272 (7%)

Query: 1   MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPW 60
              N   ++V +  +       +++ NLA AD FM    G    +  S  G F       
Sbjct: 53  FPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVF-GGFTTTLYTSLHGYFVFG---- 107

Query: 61  QMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSF 120
               GC + GF + L  E+++++L V+ +ER   +   M  N R    HA   +   W  
Sbjct: 108 --PTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVM 164

Query: 121 AILMAVLPLFGISDYR---KYATCLP--FETTTGVWSLTYIVFLMFINGVAFLILMG-CY 174
           A+  A  PL G S Y       +C    +       + ++++++  ++ +  LI++  CY
Sbjct: 165 ALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCY 224

Query: 175 LKMYCAIRGSQAWN-------SNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVS 227
            ++   ++ + A           +  + + + ++V   L+CW P A VA           
Sbjct: 225 GQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDF 284

Query: 228 LEQAKIFTVFVLPLNSCCNPFLYAILTKQFKK 259
                    F    ++  NP +Y ++ KQF+ 
Sbjct: 285 GPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRN 316
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query537
4grv_A510 Neurotensin receptor type 1, lysozyme chimera; G-p 100.0
3vw7_A484 Proteinase-activated receptor 1, lysozyme; high re 100.0
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 100.0
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 100.0
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 100.0
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 100.0
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 100.0
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 100.0
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 100.0
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 100.0
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 100.0
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 100.0
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 100.0
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 100.0
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 100.0
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 100.0
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 100.0
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 100.0
2koe_A40 Human cannabinoid receptor 1 - helix 7/8 peptide; 98.18
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 98.14
2ki9_A33 Cannabinoid receptor 2; GPCR, G-protein coupled re 97.44
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=2.1e-42  Score=376.41  Aligned_cols=264  Identities=16%  Similarity=0.195  Sum_probs=204.7

Q ss_pred             CchHHHHHHHHHhcCCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc-ccchhhHHHHHHH
Q psy6681           1 MLGNGTVVFVLIFARSKI---DVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMS-AGCQMAGFMSVLS   76 (537)
Q Consensus         1 LvGN~lVl~vi~~~k~lr---~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g-~~C~v~~~l~~~~   76 (537)
                      ++||++|++++.+++++|   +++|+||+|||++|++++++.+|..++....      ....|.+| .+|++..++..++
T Consensus        47 ~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~------~~~~w~~g~~~C~~~~~~~~~~  120 (510)
T 4grv_A           47 TVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIW------VHHPWAFGDAGCRGYYFLRDAC  120 (510)
T ss_dssp             HHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT------CCSSCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCEEhhHHHHHHHHHHHHHH
Confidence            479999999999876554   7889999999999999999888887765432      22359988 8999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeeccc--------CcceecccCCCC
Q psy6681          77 AELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDYR--------KYATCLPFETTT  148 (537)
Q Consensus        77 ~~~Sv~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~~--------~~~~C~~~~~~~  148 (537)
                      ..+|++++++|++|||+||++|++|+..+|++++.++++++|++++++++|+++++....        ....|.+.+.. 
T Consensus       121 ~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~~~~c~~~~~~-  199 (510)
T 4grv_A          121 TYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADGTHPGGLVCTPIVDT-  199 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECSSSSCCGGGEEEEECSCH-
T ss_pred             HHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHhhcccccccCCCCCCcccccccccc-
Confidence            999999999999999999999999999999999999999999999999999988765221        22346554432 


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc------------------------------------------
Q psy6681         149 GVWSLTYIVFLMFINGVAFLILMGCYLKMYCAIRGSQA------------------------------------------  186 (537)
Q Consensus       149 ~~~~~~~~~~~~~~f~iP~liii~~Y~~I~~~lrk~~~------------------------------------------  186 (537)
                      .....++.+..++.|++|+++|+++|++|+++++++.+                                          
T Consensus       200 ~~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (510)
T 4grv_A          200 ATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKS  279 (510)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCTHHHHHHHHTCCEEEEEECTTSCEEEETTEECCCSSSHHHHHH
T ss_pred             chhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccccccccccCCCCCCCcccc
Confidence            22244455555666899999999999999999874210                                          


Q ss_pred             --------------------------------------------------------------------------------
Q psy6681         187 --------------------------------------------------------------------------------  186 (537)
Q Consensus       187 --------------------------------------------------------------------------------  186 (537)
                                                                                                      
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (510)
T 4grv_A          280 ELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLNNK  359 (510)
T ss_dssp             SCCC---CCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTT
T ss_pred             ccCcCCCCCCCCcccCCccccccCCCCcccccccccCCCCCCCcCccccccccccCCccccCCCCCCCCCCccccccccC
Confidence                                                                                            


Q ss_pred             ----------------------------------------ccccchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHccccc
Q psy6681         187 ----------------------------------------WNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLV  226 (537)
Q Consensus       187 ----------------------------------------~~~~~~r~~k~L~~ivliFllcwlP~~I~~il~~~~~~~~  226 (537)
                                                              ..++++|++||+++|+++|++||+||+++.++..+.....
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~erk~~k~L~iVv~~F~iCWlPf~i~~l~~~~~~~~~  439 (510)
T 4grv_A          360 RWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSGSVQALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYISDEQ  439 (510)
T ss_dssp             CHHHHHHHHHSSCSCCSSHHHHHHHHHHHHHSSSGGGTTSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred             CCcccccccccccccccCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence                                                    1134678999999999999999999999999877653322


Q ss_pred             -------chHHHHHHHHHHhhhhhhHHHHHHHhcchHHHHHHHHHHhccccc
Q psy6681         227 -------SLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTIEES  271 (537)
Q Consensus       227 -------~~~~l~~i~~~l~~lns~iNPiIY~~~nk~FR~~l~~l~~~~~~~  271 (537)
                             ....+..++.+|+|+||++||+||+++|++||++|+++++|+++.
T Consensus       440 ~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR~aFk~iL~C~C~~  491 (510)
T 4grv_A          440 WTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFRQVFLSTLACLCPG  491 (510)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC-----------
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCC
Confidence                   123455678889999999999999999999999999999875443
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 537
d1u19a_348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9e-20
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.5 bits (218), Expect = 9e-20
 Identities = 51/304 (16%), Positives = 97/304 (31%), Gaps = 26/304 (8%)

Query: 1   MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPW 60
              N   ++V +  +       +++ NLA AD FM        +  +             
Sbjct: 52  FPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCN 111

Query: 61  QMSAGCQMAGFMSVLSAELSVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSF 120
                  + G +++       ++L V+ +ER   +   M  N R    HA   +   W  
Sbjct: 112 LEGFFATLGGEIAL-------WSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVM 163

Query: 121 AILMAVLPLFGISDYRKYATCLPFETTTGVWSLTY------IVFLMFINGVAFLILMGCY 174
           A+  A  PL G S Y                          I   +    +  +++  CY
Sbjct: 164 ALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCY 223

Query: 175 LKMYCAIRGSQA-------WNSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLVS 227
            ++   ++ + A           +  + + + ++V   L+CW P A VA           
Sbjct: 224 GQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDF 283

Query: 228 LEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTIEESRVTRGIGRCRHSSNFS 287
                    F    ++  NP +Y ++ KQF+   V              +G    S+  S
Sbjct: 284 GPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL-----CCGKNPLGDDEASTTVS 338

Query: 288 NRQT 291
             +T
Sbjct: 339 KTET 342

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query537
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 100.0
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-34  Score=293.72  Aligned_cols=260  Identities=20%  Similarity=0.292  Sum_probs=209.3

Q ss_pred             CchHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc-ccchhhHHHHHHHHHH
Q psy6681           1 MLGNGTVVFVLIFARSKIDVPRFLVCNLAAADFFMGLYLGLLAVVDASTLGEFRMYAIPWQMS-AGCQMAGFMSVLSAEL   79 (537)
Q Consensus         1 LvGN~lVl~vi~~~k~lr~~~n~lLlnLAIaDLl~~l~~lp~~i~~~~~~~~~~~~~~~W~~g-~~C~v~~~l~~~~~~~   79 (537)
                      ++||+++++++.++|++|++.|++++|||++|++.++..+|..+......        .|..+ ..|.+..++..++..+
T Consensus        52 i~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~--------~~~~~~~~c~~~~~~~~~~~~~  123 (348)
T d1u19a_          52 FPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHG--------YFVFGPTGCNLEGFFATLGGEI  123 (348)
T ss_dssp             HHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT--------SCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--------ccccCchhhhhhhhccccceee
Confidence            47999999999999999999999999999999999988888776655432        25555 8999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCccccccccchhhhHHHHHHHHHHHHhhhhhheeecc---cCcceecccCCC---Ccchhh
Q psy6681          80 SVFTLAVITLERNYAITHAMHLNKRLSLKHAGYIMVCGWSFAILMAVLPLFGISDY---RKYATCLPFETT---TGVWSL  153 (537)
Q Consensus        80 Sv~~l~~IsIDRYiaI~~Pl~y~~~~t~k~~~iii~iiWiislli~i~p~~~~~~~---~~~~~C~~~~~~---~~~~~~  153 (537)
                      ++++++++++|||++|++|++|... ++++....++++|.+++++..++.++....   .....|......   ......
T Consensus       124 s~~~l~~is~~R~~~i~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (348)
T d1u19a_         124 ALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNES  202 (348)
T ss_dssp             HHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEETTTTEEECCCSCCCGGGTHHH
T ss_pred             ecchhhhhhcccceeeecccccccc-ccccccccceeeehhhhheecccccccceeccCCcccccccccccccccccchh
Confidence            9999999999999999999998664 667777778888999988888887765533   223344332222   222223


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-------cccchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHccccc
Q psy6681         154 TYIVFLMFINGVAFLILMGCYLKMYCAIRGSQAW-------NSNDSRIAKRMALLVFTDLLCWFPIALVALTAICGVHLV  226 (537)
Q Consensus       154 ~~~~~~~~~f~iP~liii~~Y~~I~~~lrk~~~~-------~~~~~r~~k~L~~ivliFllcwlP~~I~~il~~~~~~~~  226 (537)
                      +..+...+.+++|+++++++|.++.++++++...       .++++|+++++++++++|++||+|+.+..++........
T Consensus       203 ~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~  282 (348)
T d1u19a_         203 FVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSD  282 (348)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhhHHHHhhHhheEEEeehHHHHHhhHHHhhhheeeccCCcc
Confidence            3344444456899999999999999998876433       345789999999999999999999999888877765555


Q ss_pred             chHHHHHHHHHHhhhhhhHHHHHHHhcchHHHHHHHHHHhccc
Q psy6681         227 SLEQAKIFTVFVLPLNSCCNPFLYAILTKQFKKDCVMICKTIE  269 (537)
Q Consensus       227 ~~~~l~~i~~~l~~lns~iNPiIY~~~nk~FR~~l~~l~~~~~  269 (537)
                      .......+..++.++|+++||+||++++++||++++++++|.+
T Consensus       283 ~~~~~~~~~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~l~c~~  325 (348)
T d1u19a_         283 FGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGK  325 (348)
T ss_dssp             CCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHTSSC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCC
Confidence            5666777888999999999999999999999999999997543