Psyllid ID: psy66

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MGSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFMPETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQTLREFTPIRILTTRNVASLQCSIENSCNQRAIATGYLCMYDFYCH
Secondary Structure (PSIPRED)
ccccccHHcccccccccccHHHcHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEcccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHHccEEEEcEccc
Coil and Loop (DISEMBL)
MGSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTfmpetpawyaskGLVVKSSASLNWLRNSSAIANAEIADILQSISereddkkscgqtlreftpiriltTRNVASLQCSIENSCNQRAIATGYLCMYDFYCH
Flexible Loop (DISEMBL)
MGSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFMPETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSisereddkkscgqtlreftpirilttRNVASLQCSIENSCNQRAIATGYLCMYDFYCH
Low Complexity Region (SEG)
MGSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFMPETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQTLREFTPIRILTTRNVASLQCSIENSCNQRAIATGYLCMYDFYCH
Disordered region (IsUnstruct)
****TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFMPETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQS**********CGQTLREFTPIRILTTRNVASLQCSIENSCNQRAIATGYLCMYDFYC*
Disordered Region (DISOPRED)
*GSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFMPETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADI*******************EFTPIRILTTRNVASLQCSIENSCNQRAIATGYLCMYDFYCH
Disordered Region (DISEMBL)
MGSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFMPETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSIS*********GQTLREFTPIRILTTRNVASLQCSIENSCNQRAIATGYLCMYDFYCH
Disordered Region (DISPRO)
**SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFMPETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQTLREFTPIRILTTRNVASLQCSIENSCNQRAIATGYLCMYDFYCH
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFMPETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQTLREFTPIRILTTRNVASLQCSIENSCNQRAIATGYLCMYDFYCH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
A9ZSY3	505	Facilitated trehalose tra	N/A	N/A	0.737	0.239	0.322	8e-13
B4HNS1	488	Facilitated trehalose tra	N/A	N/A	0.731	0.245	0.286	1e-12
B4QBN3	488	Facilitated trehalose tra	N/A	N/A	0.682	0.229	0.294	2e-12
B4MYA4	872	Facilitated trehalose tra	N/A	N/A	0.786	0.147	0.294	2e-12
B4P624	856	Facilitated trehalose tra	N/A	N/A	0.786	0.150	0.279	2e-12
B3NSE1	856	Facilitated trehalose tra	N/A	N/A	0.786	0.150	0.272	3e-12
B4QBN2	857	Facilitated trehalose tra	N/A	N/A	0.707	0.135	0.279	3e-12
Q8MKK4	488	Facilitated trehalose tra	no	N/A	0.731	0.245	0.270	7e-12
B4HNS0	857	Facilitated trehalose tra	N/A	N/A	0.689	0.131	0.278	9e-12
A1Z8N1	857	Facilitated trehalose tra	no	N/A	0.689	0.131	0.278	9e-12

>sp|A9ZSY3|TRET1_BOMMO Facilitated trehalose transporter Tret1 OS=Bombyx mori GN=Tret1 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 3/124 (2%)

Query: 7   VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFM 66
           VY+ E   P  RG    L   F + G+L  +  G  L W  + +F AA     F+++   
Sbjct: 164 VYIGETIQPEVRGALGLLPTAFGNTGILLAFLVGSYLDWSNLAFFGAAIPVPFFLLMILT 223

Query: 67  PETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQTLREFTP 126
           PETP WY SK  V ++  SL WLR  +     E+ D+  +IS+ E D ++ G   ++   
Sbjct: 224 PETPRWYVSKARVQEARKSLRWLRGKNVNIEKEMRDL--TISQTESD-RTGGNAFKQLFS 280

Query: 127 IRIL 130
            R L
Sbjct: 281 KRYL 284

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.
Bombyx mori (taxid: 7091)

>sp|B4HNS1|TRE12_DROSE Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila sechellia GN=Tret1-2 PE=3 SV=1

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 4   STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIV 63
           S  VY+ E   P  RG    L     ++G+L  Y AG  ++W I+ +  AA      I++
Sbjct: 142 SLPVYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSILAFLGAALPVPFLILM 201

Query: 64  TFMPETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDD--KKSCGQTL 121
             +PETP W+ ++G   ++  +L WLR   A    E+ D++QS +E +    + +C +  
Sbjct: 202 IIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKDLMQSQAEADSQATRNTCLELF 261

Query: 122 RE 123
           + 
Sbjct: 262 KR 263

Fails to transport trehalose.

Drosophila sechellia (taxid: 7238)

>sp|B4QBN3|TRE12_DROSI Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila simulans GN=Tret1-2 PE=3 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 57/112 (50%)

Query: 4   STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIV 63
           S  VY+ E   P  RG    L     ++G+L  Y AG  ++W ++ +  AA      I++
Sbjct: 142 SLPVYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLILM 201

Query: 64  TFMPETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKK 115
             +PETP W+ ++G   ++  +L WLR   A    E+ D++QS +E +   +
Sbjct: 202 IIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKDLMQSQAEADSQAR 253

Fails to transport trehalose.

Drosophila simulans (taxid: 7240)

>sp|B4MYA4|TRET1_DROWI Facilitated trehalose transporter Tret1 OS=Drosophila willistoni GN=Tret1 PE=3 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 7/136 (5%)

Query: 7   VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFM 66
           VY+ E   P  RG    L   F ++G+L  + AG  + W ++ +  AA      I++  +
Sbjct: 527 VYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGAALPVPFLILMFLI 586

Query: 67  PETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQTLREFTP 126
           PETP WY S+G   ++  +L+WLR   A    E+  +L+S   + D  +S  Q     T 
Sbjct: 587 PETPRWYVSRGREERARKALSWLRGKEADVEPELKGLLRS---QADADRSATQN----TM 639

Query: 127 IRILTTRNVASLQCSI 142
           + +L   N+  L  S+
Sbjct: 640 LELLKRNNLKPLSISL 655

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila willistoni (taxid: 7260)

>sp|B4P624|TRET1_DROYA Facilitated trehalose transporter Tret1 OS=Drosophila yakuba GN=Tret1 PE=3 SV=1

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 7/136 (5%)

Query: 7   VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFM 66
           VY+ E   P  RG    L   F ++G+L  + AG  ++W ++ +  AA      I++  +
Sbjct: 512 VYLGETVQPEVRGTLGLLPTAFGNIGILVCFVAGSFMNWSMLAFLGAALPVPFLILMFLI 571

Query: 67  PETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQTLREFTP 126
           PETP WY S+G   ++  +L WLR   A    E+  +++  S+ + D+++   T+ E   
Sbjct: 572 PETPRWYVSRGREERARKALTWLRGKEADVEPELKGLMR--SQADADRQATQNTMLE--- 626

Query: 127 IRILTTRNVASLQCSI 142
             +L   N+  L  S+
Sbjct: 627 --LLKRNNLKPLSISL 640

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila yakuba (taxid: 7245)

>sp|B3NSE1|TRET1_DROER Facilitated trehalose transporter Tret1 OS=Drosophila erecta GN=Tret1 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 7/136 (5%)

Query: 7   VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFM 66
           VY+ E   P  RG    L   F ++G+L  + AG  ++W ++ +  AA      I++  +
Sbjct: 512 VYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILMFLI 571

Query: 67  PETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQTLREFTP 126
           PETP W+ S+G   ++  +L+WLR   A    E+  +++  S+ + D+++   T+ E   
Sbjct: 572 PETPRWFVSRGREERARKALSWLRGKEADVEPELKGLMR--SQADADRQATQNTMLE--- 626

Query: 127 IRILTTRNVASLQCSI 142
             +L   N+  L  S+
Sbjct: 627 --LLKRNNLKPLSISL 640

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila erecta (taxid: 7220)

>sp|B4QBN2|TRE11_DROSI Facilitated trehalose transporter Tret1-1 OS=Drosophila simulans GN=Tret1-1 PE=3 SV=2

 Score = 70.9 bits (172), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 7   VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFM 66
           VY+ E   P  RG    L   F ++G+L  + AG  ++W ++ +  AA      I++  +
Sbjct: 513 VYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILMFLI 572

Query: 67  PETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQTLREF 124
           PETP W+  +GL  ++  +L WLR   A    E+  +++  S+ + D+++   T+ E 
Sbjct: 573 PETPRWFVGRGLEERARKALKWLRGKEADVEPELKGLMR--SQADADRQASRNTMLEL 628

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila simulans (taxid: 7240)

>sp|Q8MKK4|TRE12_DROME Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila melanogaster GN=Tret1-2 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 4   STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIV 63
           S  VY+ E   P  RG    L     ++G+L  Y AG  ++W ++ +  AA      I++
Sbjct: 142 SLPVYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLILM 201

Query: 64  TFMPETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQS--ISEREDDKKSCGQTL 121
             +PETP W+ ++G   ++  +L WLR   A    E+ +++QS   ++R+  + +C +  
Sbjct: 202 IIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKELMQSQADADRQATQNTCLELF 261

Query: 122 RE 123
           + 
Sbjct: 262 KR 263

Fails to transport trehalose.

Drosophila melanogaster (taxid: 7227)

>sp|B4HNS0|TRE11_DROSE Facilitated trehalose transporter Tret1-1 OS=Drosophila sechellia GN=Tret1-1 PE=3 SV=1

 Score = 69.7 bits (169), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 2/115 (1%)

Query: 7   VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFM 66
           VY+ E   P  RG    L   F ++G+L  + AG  ++W ++ +  AA      I++  +
Sbjct: 513 VYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILMFLI 572

Query: 67  PETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQTL 121
           PETP W+  +GL  ++  +L WLR   A    E+  +++  S+ + D+++   T+
Sbjct: 573 PETPRWFVGRGLEERARKALKWLRGKEADVEPELKGLMR--SQADADRQASRNTM 625

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila sechellia (taxid: 7238)

>sp|A1Z8N1|TRE11_DROME Facilitated trehalose transporter Tret1-1 OS=Drosophila melanogaster GN=Tret1-1 PE=1 SV=1

 Score = 69.7 bits (169), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 2/115 (1%)

Query: 7   VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFM 66
           VY+ E   P  RG    L   F ++G+L  + AG  ++W ++ +  AA      I++  +
Sbjct: 513 VYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILMFLI 572

Query: 67  PETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQTL 121
           PETP W+  +GL  ++  +L WLR   A    E+  +++  S+ + D+++   T+
Sbjct: 573 PETPRWFVGRGLEERARKALKWLRGKEADVEPELKGLMR--SQADADRQASRNTM 625

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
328701837	496	PREDICTED: facilitated trehalose transpo	0.743	0.245	0.456	5e-25
357611704	583	hypothetical protein KGM_13558 [Danaus p	0.676	0.190	0.351	8e-17
91085493	539	PREDICTED: similar to sugar transporter	0.707	0.215	0.32	4e-15
322794505	513	hypothetical protein SINV_10456 [Solenop	0.75	0.239	0.341	5e-15
307202951	521	Solute carrier family 2, facilitated glu	0.743	0.234	0.352	1e-14
242017426	515	conserved hypothetical protein [Pediculu	0.725	0.231	0.336	2e-14
91085503	518	PREDICTED: similar to sugar transporter	0.743	0.235	0.325	2e-14
260806545	507	hypothetical protein BRAFLDRAFT_82927 [B	0.719	0.232	0.379	3e-14
270008828	522	hypothetical protein TcasGA2_TC015433 [T	0.621	0.195	0.392	3e-14
91084359	484	PREDICTED: similar to AGAP007667-PA [Tri	0.792	0.268	0.360	4e-14

>gi|328701837|ref|XP_001944504.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum]

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 82/125 (65%), Gaps = 3/125 (2%)

Query: 1   MGSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISF 60
           M S+ YVYV+E+SL  +RG+ +S GP+FVS+GVL VY  G ++ WQ+V   CA T+ +SF
Sbjct: 128 MSSACYVYVAEVSLAKHRGVLSSFGPIFVSIGVLIVYSLGSIMPWQVVSIPCALTSLLSF 187

Query: 61  IIVTFMPETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQT 120
           + V   PE+P+W ASKG V  +  SL WLR   ++A+ E+A+IL ++    D   S    
Sbjct: 188 LSVNLTPESPSWLASKGRVADAGKSLMWLRRKPSLADKELAEILNNLG---DGNGSTAPM 244

Query: 121 LREFT 125
           LR+FT
Sbjct: 245 LRDFT 249

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357611704|gb|EHJ67616.1| hypothetical protein KGM_13558 [Danaus plexippus]

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 69/111 (62%)

Query: 1   MGSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISF 60
           M +++Y+YV+EI+ P  RG+ ++LGP  VS G+  VY  G  +HW+ V   CAA + ++ 
Sbjct: 206 MSTASYIYVAEITTPEKRGVLSALGPGLVSTGIFIVYSLGAFIHWRTVAAICAAVSLLTP 265

Query: 61  IIVTFMPETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISERE 111
            ++ F+PE+P W ASKG + ++  ++ WLR ++  A  E+ +  +   + E
Sbjct: 266 FLMYFVPESPLWLASKGQMKEAYDAMFWLRQNNNTAQQELMEFTKDRKQNE 316

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91085493|ref|XP_971034.1| PREDICTED: similar to sugar transporter [Tribolium castaneum] gi|270008379|gb|EFA04827.1| hypothetical protein TcasGA2_TC014877 [Tribolium castaneum]

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 67/125 (53%), Gaps = 9/125 (7%)

Query: 3   SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFII 62
           S   VY++EI+    RG   S  P + SLGV+  Y+ G++++W+ V + C   A + FI+
Sbjct: 166 SPAMVYITEIARADMRGSLMSFAPAYTSLGVVLAYFEGWLMNWRTVAWVCLVYAILPFIL 225

Query: 63  VTFMPETPAWYASKGLVVKSSASLNWL---------RNSSAIANAEIADILQSISEREDD 113
           V F+PE+PAW  +KG   ++  S+NWL         +N    A  +   +++   E+E  
Sbjct: 226 VMFIPESPAWLIAKGRNEQAKKSINWLNKYQPRVPSKNDQTFAQVQFEYLIREHEEKEKA 285

Query: 114 KKSCG 118
           K + G
Sbjct: 286 KINSG 290

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322794505|gb|EFZ17558.1| hypothetical protein SINV_10456 [Solenopsis invicta]

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 66/123 (53%)

Query: 1   MGSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISF 60
           M +  Y+YVSE + P  R    S GPV VSLGVL VY  G +  WQ         A +S 
Sbjct: 106 MANGLYLYVSEAAAPDQRAWLTSCGPVLVSLGVLMVYTLGAITTWQKAAAISIGPAILSL 165

Query: 61  IIVTFMPETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQT 120
            +   +PETPAW AS+G   ++  +L WLR      + E  ++ ++ ++R++ ++S  + 
Sbjct: 166 ALTRMLPETPAWLASRGRTDEAKEALLWLRGPGLNVDKEFRELCETNAKRKEKRESLPRA 225

Query: 121 LRE 123
           L +
Sbjct: 226 LHK 228

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202951|gb|EFN82171.1| Solute carrier family 2, facilitated glucose transporter member 6 [Harpegnathos saltator]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 65/122 (53%)

Query: 1   MGSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISF 60
           M +  Y+YVSE + P  R   AS GPV VSLGVL VY  G +  WQ         A +S 
Sbjct: 125 MANGLYLYVSEAAAPDQRAWLASCGPVLVSLGVLMVYTLGAITTWQRAAVISIGPAILSL 184

Query: 61  IIVTFMPETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQT 120
            +   +PETP W A++G   ++  +L WLR      + E  ++ ++  +R+++KKS  + 
Sbjct: 185 ALTRTLPETPVWLAARGRTDEAKKALLWLRGPGLKTDQEYQELCEANLKRKEEKKSLLRA 244

Query: 121 LR 122
           L 
Sbjct: 245 LH 246

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017426|ref|XP_002429189.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212514078|gb|EEB16451.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 65/119 (54%)

Query: 1   MGSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISF 60
           M +  Y+YVSE+S   +R + ++ GP   SLGVL VY  G+ L W+      +A + ++ 
Sbjct: 137 MTAVNYLYVSEVSRKEHRSVLSAFGPALTSLGVLIVYTMGFFLSWEKTALISSAFSALTV 196

Query: 61  IIVTFMPETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQ 119
           + +   PE+PAW+ SK     +  SL WLR  S +A  E+  ++ S +E E+     G+
Sbjct: 197 MAMLMAPESPAWHVSKNEYNDAYKSLVWLRKDSKVAEVELKGLMSSKTETENVVDKSGE 255

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91085503|ref|XP_971406.1| PREDICTED: similar to sugar transporter [Tribolium castaneum] gi|270008374|gb|EFA04822.1| hypothetical protein TcasGA2_TC014872 [Tribolium castaneum]

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 74/129 (57%), Gaps = 7/129 (5%)

Query: 3   SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFII 62
           S   VY++EI+    RG   +LGP +VSLG++  Y+ G+++ W+++ + C     + F +
Sbjct: 153 SPAVVYITEIARKDMRGSLIALGPSYVSLGMVIAYFKGWLISWRLIAWLCNIYLVVPFFL 212

Query: 63  VTFMPETPAWYASKGLVVKSSASLNWLRNSSAIANAE--IADILQSISEREDD-KKSCGQ 119
           +  +PE+P W  SKG V ++  +L+WL       N +   A++  ++  +ED+ KKS  Q
Sbjct: 213 LFLIPESPIWLVSKGRVQEAQKALDWLHKYQPRPNNQKSFAEMTLNLLVKEDETKKSEAQ 272

Query: 120 ----TLREF 124
               T+REF
Sbjct: 273 GGDSTIREF 281

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260806545|ref|XP_002598144.1| hypothetical protein BRAFLDRAFT_82927 [Branchiostoma floridae] gi|229283416|gb|EEN54156.1| hypothetical protein BRAFLDRAFT_82927 [Branchiostoma floridae]

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/124 (37%), Positives = 64/124 (51%), Gaps = 6/124 (4%)

Query: 7   VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFM 66
           VYV+EIS P  RGL  +   + V++G+L VY  G  LHW+ +   C   A I  I + FM
Sbjct: 153 VYVAEISSPRVRGLLGASFQLMVTIGILLVYVFGNFLHWRWLAIVCLVPAVILIIAMAFM 212

Query: 67  PETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQTLREFTP 126
           PETP W  +KG    +  SL WLR        E ADI  ++ ++E        + REFT 
Sbjct: 213 PETPRWLLAKGRRPAAVTSLLWLRGPDVDVEDECADIESNLQQQET------MSWREFTQ 266

Query: 127 IRIL 130
             +L
Sbjct: 267 PSLL 270

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|270008828|gb|EFA05276.1| hypothetical protein TcasGA2_TC015433 [Tribolium castaneum]

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 58/102 (56%)

Query: 1   MGSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISF 60
           M ++ Y YVSEIS P  RG+  SLGP+  S G+L  Y  GY+L W  V +   + A  + 
Sbjct: 165 MSTACYTYVSEISTPENRGILQSLGPICASFGILLTYTLGYVLSWSTVAFLSVSFALFTL 224

Query: 61  IIVTFMPETPAWYASKGLVVKSSASLNWLRNSSAIANAEIAD 102
           I V F+PE+P++    GL  K+  S  W R + A+A  E++ 
Sbjct: 225 IAVEFLPESPSYLIKAGLHSKAFDSYFWFRRNVALAQTEVSK 266

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91084359|ref|XP_973264.1| PREDICTED: similar to AGAP007667-PA [Tribolium castaneum]

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 69/133 (51%), Gaps = 3/133 (2%)

Query: 1   MGSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISF 60
           M ++ Y YVSEIS P  RG+  SLGP+  S G+L  Y  GY+L W  V +   + A  + 
Sbjct: 127 MSTACYTYVSEISTPENRGILQSLGPICASFGILLTYTLGYVLSWSTVAFLSVSFALFTL 186

Query: 61  IIVTFMPETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISER-EDDKKSCGQ 119
           I V F+PE+P++    GL  K+  S  W R + A+A  E++    + SE+ E   K    
Sbjct: 187 IAVEFLPESPSYLIKAGLHSKAFDSYFWFRRNVALAQTEVSK--HASSEKIEISAKEIYC 244

Query: 120 TLREFTPIRILTT 132
           +     P  IL T
Sbjct: 245 SAATIKPFLILVT 257

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
UNIPROTKB|A9ZSY3	505	Tret1 "Facilitated trehalose t	0.737	0.239	0.322	1e-12
UNIPROTKB|B4HNS1	488	Tret1-2 "Facilitated trehalose	0.676	0.227	0.300	2.6e-12
UNIPROTKB|B4P624	856	Tret1 "Facilitated trehalose t	0.780	0.149	0.291	5e-12
FB|FBgn0050035	857	Tret1-1 "Trehalose transporter	0.774	0.148	0.274	5e-12
UNIPROTKB|B4HNS0	857	Tret1-1 "Facilitated trehalose	0.774	0.148	0.274	5e-12
UNIPROTKB|B4MYA4	872	Tret1 "Facilitated trehalose t	0.780	0.146	0.299	5.1e-12
UNIPROTKB|B4QBN3	488	Tret1-2 "Facilitated trehalose	0.664	0.223	0.293	5.5e-12
UNIPROTKB|B3NSE1	856	Tret1 "Facilitated trehalose t	0.780	0.149	0.284	8.2e-12
UNIPROTKB|B4QBN2	857	Tret1-1 "Facilitated trehalose	0.695	0.133	0.296	8.2e-12
UNIPROTKB|B0WC46	517	Tret1 "Facilitated trehalose t	0.634	0.201	0.339	1e-11

UNIPROTKB|A9ZSY3 Tret1 "Facilitated trehalose transporter Tret1" [Bombyx mori (taxid:7091)]

 Score = 177 (67.4 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 40/124 (32%), Positives = 59/124 (47%)

Query:     7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFM 66
             VY+ E   P  RG    L   F + G+L  +  G  L W  + +F AA     F+++   
Sbjct:   164 VYIGETIQPEVRGALGLLPTAFGNTGILLAFLVGSYLDWSNLAFFGAAIPVPFFLLMILT 223

Query:    67 PETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQTLREFTP 126
             PETP WY SK  V ++  SL WLR  +     E+ D+  +IS+ E D+   G   ++   
Sbjct:   224 PETPRWYVSKARVQEARKSLRWLRGKNVNIEKEMRDL--TISQTESDRTG-GNAFKQLFS 280

Query:   127 IRIL 130
              R L
Sbjct:   281 KRYL 284

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

UNIPROTKB|B4HNS1 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila sechellia (taxid:7238)]

 Score = 173 (66.0 bits), Expect = 2.6e-12, P = 2.6e-12
 Identities = 34/113 (30%), Positives = 58/113 (51%)

Query:     7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFM 66
             VY+ E   P  RG    L     ++G+L  Y AG  ++W I+ +  AA      I++  +
Sbjct:   145 VYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSILAFLGAALPVPFLILMIII 204

Query:    67 PETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDD--KKSC 117
             PETP W+ ++G   ++  +L WLR   A    E+ D++QS +E +    + +C
Sbjct:   205 PETPRWFVNRGQEERARKALKWLRGKEADVEPELKDLMQSQAEADSQATRNTC 257

GO:0044459 "plasma membrane part" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4P624 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila yakuba (taxid:7245)]

 Score = 174 (66.3 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 40/137 (29%), Positives = 71/137 (51%)

Query:     7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFM 66
             VY+ E   P  RG    L   F ++G+L  + AG  ++W ++ +  AA   + F+I+ F+
Sbjct:   512 VYLGETVQPEVRGTLGLLPTAFGNIGILVCFVAGSFMNWSMLAFLGAALP-VPFLILMFL 570

Query:    67 -PETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQTLREFT 125
              PETP WY S+G   ++  +L WLR   A    E+  +++S  + + D+++   T+ E  
Sbjct:   571 IPETPRWYVSRGREERARKALTWLRGKEADVEPELKGLMRS--QADADRQATQNTMLE-- 626

Query:   126 PIRILTTRNVASLQCSI 142
                +L   N+  L  S+
Sbjct:   627 ---LLKRNNLKPLSISL 640

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

FB|FBgn0050035 Tret1-1 "Trehalose transporter 1-1" [Drosophila melanogaster (taxid:7227)]

 Score = 174 (66.3 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 36/131 (27%), Positives = 69/131 (52%)

Query:     7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFM 66
             VY+ E   P  RG    L   F ++G+L  + AG  ++W ++ +  AA   + F+I+ F+
Sbjct:   513 VYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALP-VPFLILMFL 571

Query:    67 -PETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQTLREFT 125
              PETP W+  +GL  ++  +L WLR   A    E+  +++S  + + D+++   T+ E  
Sbjct:   572 IPETPRWFVGRGLEERARKALKWLRGKEADVEPELKGLMRS--QADADRQASRNTMLELL 629

Query:   126 PIRILTTRNVA 136
              +  L   +++
Sbjct:   630 KLNNLKPLSIS 640

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0008643 "carbohydrate transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015771 "trehalose transport" evidence=IDA

GO:0016020 "membrane" evidence=IDA

UNIPROTKB|B4HNS0 Tret1-1 "Facilitated trehalose transporter Tret1-1" [Drosophila sechellia (taxid:7238)]

 Score = 174 (66.3 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 36/131 (27%), Positives = 69/131 (52%)

Query:     7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFM 66
             VY+ E   P  RG    L   F ++G+L  + AG  ++W ++ +  AA   + F+I+ F+
Sbjct:   513 VYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALP-VPFLILMFL 571

Query:    67 -PETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQTLREFT 125
              PETP W+  +GL  ++  +L WLR   A    E+  +++S  + + D+++   T+ E  
Sbjct:   572 IPETPRWFVGRGLEERARKALKWLRGKEADVEPELKGLMRS--QADADRQASRNTMLELL 629

Query:   126 PIRILTTRNVA 136
              +  L   +++
Sbjct:   630 KLNNLKPLSIS 640

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4MYA4 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila willistoni (taxid:7260)]

 Score = 174 (66.3 bits), Expect = 5.1e-12, P = 5.1e-12
 Identities = 41/137 (29%), Positives = 70/137 (51%)

Query:     7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFM 66
             VY+ E   P  RG    L   F ++G+L  + AG  + W ++ +  AA   + F+I+ F+
Sbjct:   527 VYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGAALP-VPFLILMFL 585

Query:    67 -PETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQTLREFT 125
              PETP WY S+G   ++  +L+WLR   A    E+  +L+S  + + D+ +   T+ E  
Sbjct:   586 IPETPRWYVSRGREERARKALSWLRGKEADVEPELKGLLRS--QADADRSATQNTMLE-- 641

Query:   126 PIRILTTRNVASLQCSI 142
                +L   N+  L  S+
Sbjct:   642 ---LLKRNNLKPLSISL 655

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4QBN3 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila simulans (taxid:7240)]

 Score = 170 (64.9 bits), Expect = 5.5e-12, P = 5.5e-12
 Identities = 32/109 (29%), Positives = 56/109 (51%)

Query:     7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFM 66
             VY+ E   P  RG    L     ++G+L  Y AG  ++W ++ +  AA      I++  +
Sbjct:   145 VYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLILMIII 204

Query:    67 PETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKK 115
             PETP W+ ++G   ++  +L WLR   A    E+ D++QS +E +   +
Sbjct:   205 PETPRWFVNRGQEERARKALKWLRGKEADVEPELKDLMQSQAEADSQAR 253

GO:0044459 "plasma membrane part" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B3NSE1 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila erecta (taxid:7220)]

 Score = 172 (65.6 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 39/137 (28%), Positives = 72/137 (52%)

Query:     7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFM 66
             VY+ E   P  RG    L   F ++G+L  + AG  ++W ++ +  AA   + F+I+ F+
Sbjct:   512 VYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALP-VPFLILMFL 570

Query:    67 -PETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQTLREFT 125
              PETP W+ S+G   ++  +L+WLR   A    E+  +++S  + + D+++   T+ E  
Sbjct:   571 IPETPRWFVSRGREERARKALSWLRGKEADVEPELKGLMRS--QADADRQATQNTMLE-- 626

Query:   126 PIRILTTRNVASLQCSI 142
                +L   N+  L  S+
Sbjct:   627 ---LLKRNNLKPLSISL 640

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4QBN2 Tret1-1 "Facilitated trehalose transporter Tret1-1" [Drosophila simulans (taxid:7240)]

 Score = 172 (65.6 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 35/118 (29%), Positives = 64/118 (54%)

Query:     7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFM 66
             VY+ E   P  RG    L   F ++G+L  + AG  ++W ++ +  AA   + F+I+ F+
Sbjct:   513 VYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALP-VPFLILMFL 571

Query:    67 -PETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQTLRE 123
              PETP W+  +GL  ++  +L WLR   A    E+  +++S  + + D+++   T+ E
Sbjct:   572 IPETPRWFVGRGLEERARKALKWLRGKEADVEPELKGLMRS--QADADRQASRNTMLE 627

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B0WC46 Tret1 "Facilitated trehalose transporter Tret1" [Culex quinquefasciatus (taxid:7176)]

 Score = 168 (64.2 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 36/106 (33%), Positives = 56/106 (52%)

Query:     7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFM 66
             VY+ E   P  RG    L   F ++G+L  + AG  + W  +  F  AT  + F+I+ F+
Sbjct:   173 VYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGNYMDWSELA-FLGATLPVPFLILMFL 231

Query:    67 -PETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISERE 111
              PETP WY S+G   ++  +L WLR   A  + E+  I++S  + E
Sbjct:   232 IPETPRWYVSRGRDDRARKALQWLRGKKADVDPELKGIIKSHQDAE 277

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

GO:0044459 "plasma membrane part" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	164
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	8e-11
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	3e-10
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	0.003

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 58.8 bits (143), Expect = 8e-11
 Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 9/141 (6%)

Query: 7   VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-------HWQIVCYFCAATACIS 59
           +Y+SEI+    RG   SL  + ++ G+L     G  L        W+I        A + 
Sbjct: 124 MYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILL 183

Query: 60  FIIVTFMPETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQ 119
            I + F+PE+P W   KG + ++ A L  LR  S   + EI +   S+ ER  + +    
Sbjct: 184 LIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVS-DVDQEIQEEKDSL-ERSVEAEKASW 241

Query: 120 TLREFTPIRILTTRNVASLQC 140
                             LQ 
Sbjct: 242 LELFRGKTVRQRLLMGVMLQI 262

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 12/151 (7%)

Query: 8   YVSEISLPAYRGLFASLGPVFVSLGVLFVY-------YAGYMLHWQIVCYFCAATACISF 60
           Y+SEI+  A RG   SL  + ++ G+L  Y            L W+I        A + F
Sbjct: 151 YLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF 210

Query: 61  IIVTFMPETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQ- 119
           + + F+PE+P W   KG V ++  SL  LR +S   + E+ D L+ I  +   +K   Q 
Sbjct: 211 LGLFFLPESPRWLVGKGRVEEARKSLARLRGTS-GEDKELLDELELIDIKRSIEKRSVQP 269

Query: 120 ---TLREFTPIRILTTRNVASLQCSIENSCN 147
              +L   T            LQ   + +  
Sbjct: 270 SWGSLFSSTRRIRRRLFLGVVLQWFQQFTGI 300

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 4   STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-HWQIVCYFCAATACISFII 62
              V  +E      R +  +L  VF SLG++ +    Y +  W+ +    +    + F++
Sbjct: 200 QAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLL 259

Query: 63  VTFMPETPAWYASKG 77
             F+PE+P W  S+G
Sbjct: 260 SWFVPESPRWLISQG 274

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
KOG0569|consensus	485		99.9
KOG0254|consensus	513		99.79
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.74
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.72
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.7
KOG0255|consensus	521		99.68
TIGR00898	505	2A0119 cation transport protein.	99.66
KOG0253|consensus	528		99.54
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.4
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.26
PRK10642	490	proline/glycine betaine transporter; Provisional	99.21
PRK10642	490	proline/glycine betaine transporter; Provisional	99.1
TIGR00895	398	2A0115 benzoate transport.	98.81
PRK09952	438	shikimate transporter; Provisional	98.8
KOG0252|consensus	538		98.78
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.72
TIGR00891	405	2A0112 putative sialic acid transporter.	98.7
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.65
PRK12307	426	putative sialic acid transporter; Provisional	98.52
TIGR00893	399	2A0114 d-galactonate transporter.	98.51
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.46
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.44
KOG2533|consensus	495		98.39
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.32
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.28
PRK11663	434	regulatory protein UhpC; Provisional	98.21
PRK03893	496	putative sialic acid transporter; Provisional	98.19
KOG2532|consensus	466		98.18
PRK15075	434	citrate-proton symporter; Provisional	98.15
TIGR00901	356	2A0125 AmpG-related permease.	98.12
PRK11010	491	ampG muropeptide transporter; Validated	98.11
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.09
PRK11902	402	ampG muropeptide transporter; Reviewed	98.08
TIGR00900	365	2A0121 H+ Antiporter protein.	98.08
TIGR00805	633	oat sodium-independent organic anion transporter.	98.02
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.96
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.92
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.91
PTZ00207	591	hypothetical protein; Provisional	97.9
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.89
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.88
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.87
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.87
PRK03545	390	putative arabinose transporter; Provisional	97.85
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.85
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.82
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.75
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.72
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.67
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.66
KOG2615|consensus	451		97.65
PRK10091	382	MFS transport protein AraJ; Provisional	97.65
PRK10489	417	enterobactin exporter EntS; Provisional	97.64
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.59
PRK12382	392	putative transporter; Provisional	97.56
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.56
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.54
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.53
PRK05122	399	major facilitator superfamily transporter; Provisi	97.46
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.44
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.41
PLN00028	476	nitrate transmembrane transporter; Provisional	97.39
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.38
PRK11043	401	putative transporter; Provisional	97.37
PRK09874	408	drug efflux system protein MdtG; Provisional	97.34
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.29
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.28
KOG1330|consensus	493		97.17
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.17
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.16
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.15
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.15
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.1
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.05
PRK03699	394	putative transporter; Provisional	97.04
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.01
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.01
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	97.01
PRK10504	471	putative transporter; Provisional	96.93
PRK15011	393	sugar efflux transporter B; Provisional	96.91
PRK10054	395	putative transporter; Provisional	96.9
PRK15011	393	sugar efflux transporter B; Provisional	96.88
TIGR00898	505	2A0119 cation transport protein.	96.85
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	96.79
PRK10207	489	dipeptide/tripeptide permease B; Provisional	96.78
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	96.7
PRK05122	399	major facilitator superfamily transporter; Provisi	96.69
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	96.67
TIGR00896	355	CynX cyanate transporter. This family of proteins	96.56
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.55
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	96.47
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	96.47
TIGR00893	399	2A0114 d-galactonate transporter.	96.36
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	96.34
TIGR00892	455	2A0113 monocarboxylate transporter 1.	96.28
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	96.24
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	96.23
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	96.2
PRK12382	392	putative transporter; Provisional	96.14
TIGR00892	455	2A0113 monocarboxylate transporter 1.	96.09
PRK09528	420	lacY galactoside permease; Reviewed	95.96
KOG3626|consensus	735		95.92
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	95.92
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	95.89
PF13347	428	MFS_2: MFS/sugar transport protein	95.88
TIGR00897	402	2A0118 polyol permease family. This family of prot	95.79
PRK09952	438	shikimate transporter; Provisional	95.71
PRK03633	381	putative MFS family transporter protein; Provision	95.7
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	95.68
PRK10489	417	enterobactin exporter EntS; Provisional	95.66
PRK09705	393	cynX putative cyanate transporter; Provisional	95.65
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	95.63
PRK09584	500	tppB putative tripeptide transporter permease; Rev	95.56
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.51
KOG0569|consensus	485		95.46
TIGR00788	468	fbt folate/biopterin transporter. The only functio	95.4
PRK03893	496	putative sialic acid transporter; Provisional	95.33
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	95.27
PRK15462	493	dipeptide/tripeptide permease D; Provisional	95.26
PRK10133	438	L-fucose transporter; Provisional	95.2
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	95.18
PRK11663	434	regulatory protein UhpC; Provisional	95.02
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	94.99
PRK09874	408	drug efflux system protein MdtG; Provisional	94.88
PRK03633	381	putative MFS family transporter protein; Provision	94.88
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	94.74
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	94.54
PRK12307	426	putative sialic acid transporter; Provisional	94.47
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	94.45
TIGR00788	468	fbt folate/biopterin transporter. The only functio	94.45
PRK11010	491	ampG muropeptide transporter; Validated	94.22
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	94.09
PRK11646	400	multidrug resistance protein MdtH; Provisional	94.08
PRK09528	420	lacY galactoside permease; Reviewed	93.61
TIGR00897	402	2A0118 polyol permease family. This family of prot	93.58
PRK10406	432	alpha-ketoglutarate transporter; Provisional	93.36
PRK09584	500	tppB putative tripeptide transporter permease; Rev	93.32
PRK11462	460	putative transporter; Provisional	93.26
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	93.21
PRK09669	444	putative symporter YagG; Provisional	93.18
TIGR00891	405	2A0112 putative sialic acid transporter.	93.06
PRK03545	390	putative arabinose transporter; Provisional	93.05
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	92.92
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	92.73
KOG2816|consensus	463		92.46
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	92.31
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	92.26
KOG3764|consensus	464		92.24
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	91.94
COG2211	467	MelB Na+/melibiose symporter and related transport	91.74
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	91.56
PRK09705	393	cynX putative cyanate transporter; Provisional	91.2
PRK10504	471	putative transporter; Provisional	91.19
KOG0255|consensus	521		91.1
KOG0252|consensus	538		90.8
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	90.5
PRK11902	402	ampG muropeptide transporter; Reviewed	89.84
PRK10429	473	melibiose:sodium symporter; Provisional	89.66
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	89.19
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	89.14
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	88.94
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	87.63
PRK10054	395	putative transporter; Provisional	86.4
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	86.39
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	86.35
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	86.31
KOG0254|consensus	513		86.29
KOG3810|consensus	433		86.09
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	85.81
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	85.15
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	85.0
KOG2504|consensus	509		84.03
COG3202	509	ATP/ADP translocase [Energy production and convers	83.7
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	82.69
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	82.44
KOG0253|consensus	528		81.88
PLN00028	476	nitrate transmembrane transporter; Provisional	80.96
PRK03699	394	putative transporter; Provisional	80.92
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	80.83
PRK10207	489	dipeptide/tripeptide permease B; Provisional	80.61

>KOG0569|consensus

Probab=99.90  E-value=1.2e-22  Score=161.61  Aligned_cols=138  Identities=22%  Similarity=0.275  Sum_probs=112.7

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH------hHHHHHHHHHHHHHHHHHHHhhcCCchHHHHh-
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML------HWQIVCYFCAATACISFIIVTFMPETPAWYAS-   75 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~------~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~~-   75 (164)
                      ...|+|+.|++|++.||..+++.+++..+|.+++..++...      .|++++.+..+|+++.++..+++|||||||+. 
T Consensus       135 ~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~  214 (485)
T KOG0569|consen  135 GLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIK  214 (485)
T ss_pred             HHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Confidence            46799999999999999999999999999999998888766      79999999999999999999999999999997 


Q ss_pred             cCCHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhh--hhcccchhhhhhccchH-HHHHHHHHHHHHH
Q psy66            76 KGLVVKSSASLNWLRNSSAIANAEIADILQSISER--EDDKKSCGQTLREFTPI-RILTTRNVASLQC  140 (164)
Q Consensus        76 ~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~-~~~~~~~l~~~~~  140 (164)
                      |||.+||++.++++++++++..+..++..+.++++  ++++.+++|+++++..| .+.+++.+.+.|.
T Consensus       215 k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq  282 (485)
T KOG0569|consen  215 KGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQ  282 (485)
T ss_pred             cCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHH
Confidence            99999999999999997543333323223322222  23667899999997555 5567777777665

>KOG0254|consensus

Probab=99.79  E-value=3.9e-18  Score=138.28  Aligned_cols=141  Identities=26%  Similarity=0.386  Sum_probs=115.9

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhcC
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFIIVTFMPETPAWYASKG   77 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~~~~   77 (164)
                      .++|+|++|++|++.||...+..+..+.+|.+++.+++...     +||..+.+..+|+++..+..+++||||||++++|
T Consensus       161 ~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g  240 (513)
T KOG0254|consen  161 VLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKG  240 (513)
T ss_pred             hcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcC
Confidence            57899999999999999999999999999999998888887     5999999999999999888889999999999999


Q ss_pred             CHHHHHHHHHHHhC-CChhhHHHHHHHHHH-HHh--hhhcccchhhhhhccchHHHHHHHHHHHHHHHhh
Q psy66            78 LVVKSSASLNWLRN-SSAIANAEIADILQS-ISE--REDDKKSCGQTLREFTPIRILTTRNVASLQCSIE  143 (164)
Q Consensus        78 ~~~~a~~~l~~i~~-~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~  143 (164)
                      +.++|++.++++++ ++.+...+.++++.. ..+  ....+..+.++++...+++..+++.+..+|...+
T Consensus       241 ~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG  310 (513)
T KOG0254|consen  241 RLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTG  310 (513)
T ss_pred             ChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhC
Confidence            99999999999998 445566666665522 111  1122235778888667777888899988887533

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.74  E-value=3e-21  Score=153.40  Aligned_cols=138  Identities=30%  Similarity=0.499  Sum_probs=108.5

Q ss_pred             CccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----h---HHHHHHHHHHHHHHHHHHHhhcCCchHHHH
Q psy66             2 GSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----H---WQIVCYFCAATACISFIIVTFMPETPAWYA   74 (164)
Q Consensus         2 ~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~---Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~   74 (164)
                      .+.+++|+.|++|+++||+..++.+.++.+|.+++..++...    +   ||+.+.++.+|+++.++..+++|||||||+
T Consensus       120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~  199 (451)
T PF00083_consen  120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLL  199 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceec
Confidence            457889999999999999999999999999999998887655    5   999999999999888888899999999999


Q ss_pred             hcCCHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhhhhcccchhhhhhccc-hHHHHHHHHHHHHHH
Q psy66            75 SKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQTLREFT-PIRILTTRNVASLQC  140 (164)
Q Consensus        75 ~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~l~~~~~  140 (164)
                      .|||.|||++.++++++.+ ..+++.++..++.++.++++.++.++++++. ++++++.+.+.+++.
T Consensus       200 ~~~~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~  265 (451)
T PF00083_consen  200 SKGRDEEAEKVLRKLRGKE-IEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQ  265 (451)
T ss_pred             ccccccccccccccccccc-cccccccccccccccccccceeeeecccccccccccccccccccccc
Confidence            9999999999999977653 2333333333332222223378899998865 566666666666553

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.72  E-value=8.5e-17  Score=130.04  Aligned_cols=89  Identities=19%  Similarity=0.307  Sum_probs=77.3

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH---------------------------hHHHHHHHHHHH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML---------------------------HWQIVCYFCAAT   55 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~---------------------------~Wr~~~~~~~~~   55 (164)
                      +..++|+.|++|+++||+..++.+.++.+|.++++.++...                           +||+++.++++|
T Consensus       134 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip  213 (502)
T TIGR00887       134 PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVP  213 (502)
T ss_pred             HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHH
Confidence            56788999999999999999999999999998888776421                           599999999999


Q ss_pred             HHHHHHHHhhcCCchHHHHhcCCHH-HHHHHHHHHhC
Q psy66            56 ACISFIIVTFMPETPAWYASKGLVV-KSSASLNWLRN   91 (164)
Q Consensus        56 ~~l~~~~~~~~pESp~~l~~~~~~~-~a~~~l~~i~~   91 (164)
                      +++.++..+++||||||++.|+|.+ ++++.+++..+
T Consensus       214 ~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~  250 (502)
T TIGR00887       214 ALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQ  250 (502)
T ss_pred             HHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhc
Confidence            9988888899999999999998874 57777777765

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.70  E-value=7.7e-16  Score=129.05  Aligned_cols=91  Identities=20%  Similarity=0.412  Sum_probs=82.0

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----------------hHHHHHHHHHHHHHHHHHHHhh
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----------------HWQIVCYFCAATACISFIIVTF   65 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----------------~Wr~~~~~~~~~~~l~~~~~~~   65 (164)
                      +++++++.|++|++.||...+..+.++.+|.++++.++..+                 +||+++++.++|+++.++..++
T Consensus       274 p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~  353 (742)
T TIGR01299       274 PIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF  353 (742)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999998765432                 5999999999999888888899


Q ss_pred             cCCchHHHHhcCCHHHHHHHHHHHhCCC
Q psy66            66 MPETPAWYASKGLVVKSSASLNWLRNSS   93 (164)
Q Consensus        66 ~pESp~~l~~~~~~~~a~~~l~~i~~~~   93 (164)
                      +||||+|++.+||.+||.++++++++.|
T Consensus       354 lPESPrwL~~~gr~~eA~~iL~~i~~~n  381 (742)
T TIGR01299       354 MPESPRFFLENGKHDEAWMILKLIHDTN  381 (742)
T ss_pred             cCCCHHHHHHCCCHHHHHHHHHHHhcCC
Confidence            9999999999999999999999998764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0255|consensus

Probab=99.68  E-value=1.3e-15  Score=123.59  Aligned_cols=136  Identities=19%  Similarity=0.209  Sum_probs=102.6

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhcCCHHH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-HWQIVCYFCAATACISFIIVTFMPETPAWYASKGLVVK   81 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~~~~~~~~   81 (164)
                      +++.++++|+.++++|+..+++....+..|.+..++.++.. +||+.+++.++|+++.++..++.||||||++.+||.++
T Consensus       190 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~  269 (521)
T KOG0255|consen  190 TVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDE  269 (521)
T ss_pred             HHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHH
Confidence            46678899999999999999997777777777777777777 99999999999999888886667799999999999999


Q ss_pred             HHHHHHHHhCCC---hhhHHHHHHHHHH---HHhhhhcccchhhhhhccchHHHHHHHHHHHH
Q psy66            82 SSASLNWLRNSS---AIANAEIADILQS---ISEREDDKKSCGQTLREFTPIRILTTRNVASL  138 (164)
Q Consensus        82 a~~~l~~i~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  138 (164)
                      |.+.++++.+.|   .+.++..++....   ......++.++.++++.+..++..+...+.++
T Consensus       270 a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~  332 (521)
T KOG0255|consen  270 AIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWF  332 (521)
T ss_pred             HHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHH
Confidence            999999997643   2222222222111   11122344779999999966666555555553

>TIGR00898 2A0119 cation transport protein

Probab=99.66  E-value=2.9e-15  Score=120.87  Aligned_cols=135  Identities=18%  Similarity=0.272  Sum_probs=102.9

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhcCCHHH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-HWQIVCYFCAATACISFIIVTFMPETPAWYASKGLVVK   81 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~~~~~~~~   81 (164)
                      +...+++.|+.|+++|+...++.+.++.+|.++++.+++.. +||+.+++.+++.++..+..+++||||+|+..+++.++
T Consensus       199 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~  278 (505)
T TIGR00898       199 VQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEE  278 (505)
T ss_pred             HHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHH
Confidence            45667899999999999999999999999999999998877 99999999999988887777889999999999999999


Q ss_pred             HHHHHHHHhCCChh-hHHHHHHHHHHH-HhhhhcccchhhhhhccchHHHHHHHHHHH
Q psy66            82 SSASLNWLRNSSAI-ANAEIADILQSI-SEREDDKKSCGQTLREFTPIRILTTRNVAS  137 (164)
Q Consensus        82 a~~~l~~i~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  137 (164)
                      |.+.+++..+.+.. ..++..+....+ .+.+.++.++.++++++..++..+.....+
T Consensus       279 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  336 (505)
T TIGR00898       279 ALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLW  336 (505)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHH
Confidence            99999988764322 111111111111 111122468899999988877666554433

>KOG0253|consensus

Probab=99.54  E-value=9.8e-14  Score=106.62  Aligned_cols=131  Identities=14%  Similarity=0.142  Sum_probs=97.4

Q ss_pred             hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhcCCHHH
Q psy66             6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPETPAWYASKGLVVK   81 (164)
Q Consensus         6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~~~~~~~~   81 (164)
                      .++-.|..|..+|+..+-+. .+|.+|......+++..    ||||......+|..+...+.+|+||||||++.+|+++|
T Consensus       187 ~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~k  265 (528)
T KOG0253|consen  187 SAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYK  265 (528)
T ss_pred             HHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHH
Confidence            34567999999999888877 99999999999999888    99999999999988888888999999999999999999


Q ss_pred             HHHHHHHHhCCChh----------hHHHHHH--HHHHH---HhhhhcccchhhhhhccchHHHHHHHHHHH
Q psy66            82 SSASLNWLRNSSAI----------ANAEIAD--ILQSI---SEREDDKKSCGQTLREFTPIRILTTRNVAS  137 (164)
Q Consensus        82 a~~~l~~i~~~~~~----------~~~~~~~--~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  137 (164)
                      |.+.++|+++.|..          ..+++++  ...+.   .+.+....+..+++..+.++++++....++
T Consensus       266 AletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwf  336 (528)
T KOG0253|consen  266 ALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWF  336 (528)
T ss_pred             HHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHH
Confidence            99999999875522          1111111  11000   011223456788888666666665444433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.40  E-value=2e-11  Score=97.78  Aligned_cols=90  Identities=24%  Similarity=0.476  Sum_probs=78.3

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH------------hHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML------------HWQIVCYFCAATACISFIIVTFMPETP   70 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~------------~Wr~~~~~~~~~~~l~~~~~~~~pESp   70 (164)
                      +.++.++.|++|+++||+.+++.+.+..+|.+++++++...            +||+.+++.+++.++..+..+++||||
T Consensus       139 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~  218 (479)
T PRK10077        139 MLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETP  218 (479)
T ss_pred             hHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            45678999999999999999999999999999988776432            799999999888888777788899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHhCC
Q psy66            71 AWYASKGLVVKSSASLNWLRNS   92 (164)
Q Consensus        71 ~~l~~~~~~~~a~~~l~~i~~~   92 (164)
                      +|+..+++.+++++..+++.+.
T Consensus       219 ~~l~~~~~~~~~~~~~~~~~~~  240 (479)
T PRK10077        219 RYLMSRGKQEQAEGILRKIMGN  240 (479)
T ss_pred             HHHHHcCCHHHHHHHHHHHcCC
Confidence            9999999999998888877653

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.26  E-value=2.6e-10  Score=90.35  Aligned_cols=91  Identities=34%  Similarity=0.545  Sum_probs=77.1

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHH---HhH----hHHHHHHHHHHHHHHHHHHHhhcCCchHHHHh
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAG---YML----HWQIVCYFCAATACISFIIVTFMPETPAWYAS   75 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~---~~~----~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~~   75 (164)
                      +....++.|+.|+++|++..++.+.+..+|.++++.++   ...    +||+.+++..++.++.++..+++||+|+++..
T Consensus       146 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~  225 (481)
T TIGR00879       146 ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVG  225 (481)
T ss_pred             hHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            34567899999999999999999999999999999998   432    99999999877777777777889999999998


Q ss_pred             cCCHHHHHHHHHHHhCCC
Q psy66            76 KGLVVKSSASLNWLRNSS   93 (164)
Q Consensus        76 ~~~~~~a~~~l~~i~~~~   93 (164)
                      +++.+++.+..++..+.+
T Consensus       226 ~~~~~~~~~~~~~~~~~~  243 (481)
T TIGR00879       226 KGRVEEARKSLARLRGTS  243 (481)
T ss_pred             cCChHHHHHHHHHHhCCC
Confidence            888888887777765543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.21  E-value=2.9e-11  Score=97.67  Aligned_cols=99  Identities=16%  Similarity=0.060  Sum_probs=72.6

Q ss_pred             chhhhhhccCchhHHHHHhH-HHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhc---
Q psy66             5 TYVYVSEISLPAYRGLFASL-GPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPETPAWYASK---   76 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~-~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~~~---   76 (164)
                      ...++.|..|++.||...+. .+++...|.+...+.+...    +|+..++...+++++.++..+++||||+|++++   
T Consensus       363 ~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~  442 (490)
T PRK10642        363 MASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATP  442 (490)
T ss_pred             HHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccc
Confidence            45677899999999987774 6666655554444444333    578877777777777777777889999999965   


Q ss_pred             --CCHHHHHHHHHHHhCCChhhHHHHHHHHHH
Q psy66            77 --GLVVKSSASLNWLRNSSAIANAEIADILQS  106 (164)
Q Consensus        77 --~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~  106 (164)
                        ||+|||+++++++++   +.+.|.+++++.
T Consensus       443 ~~~~~~~a~~~l~~~~~---~~~~~~~~i~~~  471 (490)
T PRK10642        443 AASDIQEAKEILVEHYD---NIEQKIDDIDQE  471 (490)
T ss_pred             cccchhhHHHHhhcccc---cccchhhhcccc
Confidence              999999999999974   345555555543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.10  E-value=1.1e-09  Score=88.58  Aligned_cols=73  Identities=19%  Similarity=0.264  Sum_probs=58.9

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHh------------HhHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYM------------LHWQIVCYFCAATACISFIIVTFMPETP   70 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~------------~~Wr~~~~~~~~~~~l~~~~~~~~pESp   70 (164)
                      +.+..++.|+.|+++||+..++.+.+..+|.++++.+...            .+||+.|++..++.++.++.+.++||||
T Consensus       137 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp  216 (490)
T PRK10642        137 TGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETP  216 (490)
T ss_pred             HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCCh
Confidence            4567789999999999999999998888888877755421            1899999998877776666677899999


Q ss_pred             HHHHh
Q psy66            71 AWYAS   75 (164)
Q Consensus        71 ~~l~~   75 (164)
                      +|...
T Consensus       217 ~~~~~  221 (490)
T PRK10642        217 AFQQH  221 (490)
T ss_pred             hHHHH
Confidence            98643

>TIGR00895 2A0115 benzoate transport

Probab=98.81  E-value=2.4e-08  Score=77.48  Aligned_cols=87  Identities=18%  Similarity=0.245  Sum_probs=67.3

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHH-HHHHHHHHhhcCCchHHHHhcC
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAAT-ACISFIIVTFMPETPAWYASKG   77 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~-~~l~~~~~~~~pESp~~l~~~~   77 (164)
                      +....++.|+.|+++|++..++.+.+..+|..+++.++...    +||..+.+.++. .+...+...++||+|++...+ 
T Consensus       124 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  202 (398)
T TIGR00895       124 PNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-  202 (398)
T ss_pred             hhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-
Confidence            45677899999999999999999999999999999888665    999988887644 444455567789999887665 


Q ss_pred             CHHHHHHHHHHHh
Q psy66            78 LVVKSSASLNWLR   90 (164)
Q Consensus        78 ~~~~a~~~l~~i~   90 (164)
                      +.+++.+..++..
T Consensus       203 ~~~~~~~~~~~~~  215 (398)
T TIGR00895       203 RPETVRRIVNAIA  215 (398)
T ss_pred             CHHHHHHHHHHHH
Confidence            5555555554443

>PRK09952 shikimate transporter; Provisional

Probab=98.80  E-value=1.2e-08  Score=81.45  Aligned_cols=75  Identities=15%  Similarity=0.153  Sum_probs=61.4

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHh------------HhHHHHHHHHHHHHHHHHHHHhhcCCchH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYM------------LHWQIVCYFCAATACISFIIVTFMPETPA   71 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~------------~~Wr~~~~~~~~~~~l~~~~~~~~pESp~   71 (164)
                      .+..++.|+.|+++||+..+..+.++.+|.+++..+...            .+||+.|++..++.++.+..+..+||||+
T Consensus       145 ~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~  224 (438)
T PRK09952        145 GAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAE  224 (438)
T ss_pred             HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChh
Confidence            456799999999999999999999999999888665432            28999999999887776666777999999


Q ss_pred             HHHhcCC
Q psy66            72 WYASKGL   78 (164)
Q Consensus        72 ~l~~~~~   78 (164)
                      |...+++
T Consensus       225 ~~~~~~~  231 (438)
T PRK09952        225 FEQQQHE  231 (438)
T ss_pred             HHHHHhh
Confidence            9765433

>KOG0252|consensus

Probab=98.78  E-value=7.2e-09  Score=82.00  Aligned_cols=81  Identities=20%  Similarity=0.235  Sum_probs=70.0

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-------------------hHHHHHHHHHHHHHHHHHHH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-------------------HWQIVCYFCAATACISFIIV   63 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-------------------~Wr~~~~~~~~~~~l~~~~~   63 (164)
                      +.+-+..+|.+..+.||...+....+..+|.+.+.+++..+                   -||.++.++.+|+++.+..+
T Consensus       163 PlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~R  242 (538)
T KOG0252|consen  163 PLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFR  242 (538)
T ss_pred             cchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            55677899999999999999999999999998888887655                   79999999999999999999


Q ss_pred             hhcCCchHHHH-hcCCHHHHH
Q psy66            64 TFMPETPAWYA-SKGLVVKSS   83 (164)
Q Consensus        64 ~~~pESp~~l~-~~~~~~~a~   83 (164)
                      +-||||+||-. ..++.++|.
T Consensus       243 l~M~Et~~Y~al~~~~~~~a~  263 (538)
T KOG0252|consen  243 LKMPETARYTALVSKKLKQAA  263 (538)
T ss_pred             hcCCcchhHHHHhhcCHhhhh
Confidence            99999999984 334555555

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.72  E-value=2.7e-07  Score=73.49  Aligned_cols=70  Identities=21%  Similarity=0.331  Sum_probs=57.9

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHh------------HhHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYM------------LHWQIVCYFCAATACISFIIVTFMPETP   70 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~------------~~Wr~~~~~~~~~~~l~~~~~~~~pESp   70 (164)
                      +.+..++.|+.|+++||+..++.+.+...|.++++.+...            .+||+.|+++++++++.+..+..+||||
T Consensus       143 ~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~  222 (432)
T PRK10406        143 GTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETS  222 (432)
T ss_pred             hhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            4567899999999999999999888888888887765432            2899999999999888777777889998


Q ss_pred             HH
Q psy66            71 AW   72 (164)
Q Consensus        71 ~~   72 (164)
                      ++
T Consensus       223 ~~  224 (432)
T PRK10406        223 QQ  224 (432)
T ss_pred             hH
Confidence            64

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.70  E-value=1.8e-07  Score=72.90  Aligned_cols=75  Identities=15%  Similarity=0.217  Sum_probs=62.5

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----h--HHHHHHHHHHHHHHHHHHHhhcCCchHHHHhc
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----H--WQIVCYFCAATACISFIIVTFMPETPAWYASK   76 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~--Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~~~   76 (164)
                      +....++.|+.|+++|++..+..+.+..+|..+++.++...    +  ||+.+.+..++.++.++....+||+|++...+
T Consensus       119 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (405)
T TIGR00891       119 GSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKH  198 (405)
T ss_pred             HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHh
Confidence            34567889999999999999999999999999999887665    4  99999998888777777777899999876443


Q ss_pred             C
Q psy66            77 G   77 (164)
Q Consensus        77 ~   77 (164)
                      +
T Consensus       199 ~  199 (405)
T TIGR00891       199 A  199 (405)
T ss_pred             h
Confidence            3

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.65  E-value=1.9e-07  Score=73.12  Aligned_cols=68  Identities=22%  Similarity=0.282  Sum_probs=57.5

Q ss_pred             hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHH-HHHHhhcCCchHHH
Q psy66             6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACIS-FIIVTFMPETPAWY   73 (164)
Q Consensus         6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~-~~~~~~~pESp~~l   73 (164)
                      ...+.|+.|+++|+++.++.+.+..+|.++++.++..+    +||+.+.+.++++++. ++..+++||+|++.
T Consensus       100 ~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~  172 (368)
T TIGR00903       100 FAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQA  172 (368)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            34568999999999999999999999999999998877    9999999877765554 44566789999874

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.52  E-value=1.3e-06  Score=69.10  Aligned_cols=71  Identities=13%  Similarity=0.179  Sum_probs=57.2

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCchHHH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPETPAWY   73 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l   73 (164)
                      +....++.|+.|+++|++..++.+.+..+|.++++.+....    +||+.+++..++.++.+......||+++|.
T Consensus       125 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~  199 (426)
T PRK12307        125 ACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWE  199 (426)
T ss_pred             HHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHH
Confidence            34567889999999999999999999999999998876654    999999987766655555555678887663

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.51  E-value=1.3e-06  Score=67.32  Aligned_cols=69  Identities=16%  Similarity=0.138  Sum_probs=56.5

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHH-HhhcCCchH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFII-VTFMPETPA   71 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~-~~~~pESp~   71 (164)
                      +....++.|+.|+++|++..++.+....+|.++++.++...    +||+.+.+.+++.++..+. ..+.||+|+
T Consensus       101 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (399)
T TIGR00893       101 PGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ  174 (399)
T ss_pred             hHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence            45567899999999999999999999999999999988765    9999999888776665443 445677653

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.46  E-value=4.6e-07  Score=71.82  Aligned_cols=68  Identities=10%  Similarity=0.133  Sum_probs=56.3

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----------hHHHHHHHHHHHHHHHH-HHHhhcCCchH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----------HWQIVCYFCAATACISF-IIVTFMPETPA   71 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----------~Wr~~~~~~~~~~~l~~-~~~~~~pESp~   71 (164)
                      ....++.|+.|+++||+..++.+.+.++|.++++.++..+          +||+.+.+.+++.++.. +..+++||+|+
T Consensus       116 ~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       116 GILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            3456789999999999999999999999999998887542          89999999888876654 45567899984

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.44  E-value=2.1e-06  Score=68.92  Aligned_cols=69  Identities=16%  Similarity=0.308  Sum_probs=56.8

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHHH-hhcCCchH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFIIV-TFMPETPA   71 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~~~-~~~pESp~   71 (164)
                      +....++.|+.|+++|++..++...+..+|.++++.++..+     +||+.+++.+++.++..+.. .+.+|+|+
T Consensus       150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~  224 (465)
T TIGR00894       150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPS  224 (465)
T ss_pred             hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcc
Confidence            45667899999999999999999999999999988887655     89999999888876665544 44678875

>KOG2533|consensus

Probab=98.39  E-value=2.4e-07  Score=75.06  Aligned_cols=69  Identities=19%  Similarity=0.271  Sum_probs=59.3

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----------hHHHHHHHHHHHHHHHHH-HHhhcCCchH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----------HWQIVCYFCAATACISFI-IVTFMPETPA   71 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----------~Wr~~~~~~~~~~~l~~~-~~~~~pESp~   71 (164)
                      +....+++-+..+++||...+.+....++|.+++.+++..+          +||++|++.++..++.-+ ..+++|+.|.
T Consensus       153 P~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  153 PGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             hHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            44556788999999999999999999999999999998882          999999999988777654 5577999996

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.32  E-value=2.1e-06  Score=66.40  Aligned_cols=73  Identities=23%  Similarity=0.434  Sum_probs=59.9

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH------------hHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML------------HWQIVCYFCAATACISFIIVTFMPETP   70 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~------------~Wr~~~~~~~~~~~l~~~~~~~~pESp   70 (164)
                      +..+.++.|+.|+++|++..+..+.+..+|.++++.++...            +||+.+.+..++.++.+.....+||+|
T Consensus       115 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  194 (394)
T TIGR00883       115 GGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETP  194 (394)
T ss_pred             cccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            45677899999999999999999999999999888765422            899999988887776666667789998


Q ss_pred             HHHHh
Q psy66            71 AWYAS   75 (164)
Q Consensus        71 ~~l~~   75 (164)
                      ++...
T Consensus       195 ~~~~~  199 (394)
T TIGR00883       195 VFEKA  199 (394)
T ss_pred             hHHHH
Confidence            77544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.28  E-value=7.2e-06  Score=64.43  Aligned_cols=73  Identities=21%  Similarity=0.324  Sum_probs=59.1

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHH-HHHhhcCCchHHHHhc
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISF-IIVTFMPETPAWYASK   76 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~-~~~~~~pESp~~l~~~   76 (164)
                      ....++.|+.|+++|++..++.+.+..+|.++++.++...    +||..+++.++..++.. ....++||+|++...+
T Consensus       123 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  200 (406)
T PRK11551        123 NLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAA  200 (406)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhcc
Confidence            3456889999999999999999999999999999988665    89999988776655544 3456689999876543

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.21  E-value=2.4e-05  Score=62.40  Aligned_cols=70  Identities=9%  Similarity=0.067  Sum_probs=57.5

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHH-HHHHhhcCCchHH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACIS-FIIVTFMPETPAW   72 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~-~~~~~~~pESp~~   72 (164)
                      +....++.|+.|+++||+..++.+.+..+|.++++.++..+    +||+.+.+.+++.++. ++..+++||+|++
T Consensus       130 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~  204 (434)
T PRK11663        130 PVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQA  204 (434)
T ss_pred             hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhh
Confidence            34567889999999999999999999999999998877665    9999999888776544 4455678998875

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.19  E-value=1.2e-05  Score=64.96  Aligned_cols=72  Identities=15%  Similarity=0.216  Sum_probs=60.3

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCchHHHHh
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPETPAWYAS   75 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~~   75 (164)
                      ....++.|..|+++|++..+....+..+|.++++.++..+    +||+.+++..++.++.++....+||++++...
T Consensus       128 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~  203 (496)
T PRK03893        128 SSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEK  203 (496)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhh
Confidence            3456789999999999999999999999999999888766    99999998777766666666778999887543

>KOG2532|consensus

Probab=98.18  E-value=2.3e-05  Score=63.30  Aligned_cols=110  Identities=18%  Similarity=0.219  Sum_probs=75.7

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHHH-hhcCCchHHHHhc
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFIIV-TFMPETPAWYASK   76 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~~~-~~~pESp~~l~~~   76 (164)
                      ++.......|+|+++|+++.++...+..+|.+++..+++.+     ||+.+|++.++.+++..+.. ++..|+|.-   +
T Consensus       147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~---h  223 (466)
T KOG2532|consen  147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK---H  223 (466)
T ss_pred             hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc---C
Confidence            34556788999999999999999999999999888776666     89999999999988876655 445666641   1


Q ss_pred             CCHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhh---hhcccchhhhhhccchHHHHH
Q psy66            77 GLVVKSSASLNWLRNSSAIANAEIADILQSISER---EDDKKSCGQTLREFTPIRILT  131 (164)
Q Consensus        77 ~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~  131 (164)
                      .+                ..++|.+.+++...++   +..+..++++++++..+-..+
T Consensus       224 ~~----------------is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~  265 (466)
T KOG2532|consen  224 PN----------------ISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWI  265 (466)
T ss_pred             CC----------------CCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHH
Confidence            11                1223333333331111   114567899999887775544

>PRK15075 citrate-proton symporter; Provisional

Probab=98.15  E-value=1e-05  Score=64.52  Aligned_cols=71  Identities=27%  Similarity=0.493  Sum_probs=52.7

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH------------hHHHHHHHHHHHHHHHHHHHhhcCCchH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML------------HWQIVCYFCAATACISFIIVTFMPETPA   71 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~------------~Wr~~~~~~~~~~~l~~~~~~~~pESp~   71 (164)
                      ..+.++.|+.|+++||+..++.+.+..+|..+++.++...            +||+.|++..++..+.+......||++.
T Consensus       137 ~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~  216 (434)
T PRK15075        137 GVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEE  216 (434)
T ss_pred             HHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence            4567899999999999999998887777666655554431            9999999876655444455566789877


Q ss_pred             HHH
Q psy66            72 WYA   74 (164)
Q Consensus        72 ~l~   74 (164)
                      +..
T Consensus       217 ~~~  219 (434)
T PRK15075        217 FLA  219 (434)
T ss_pred             HHH
Confidence            654

>TIGR00901 2A0125 AmpG-related permease

Probab=98.12  E-value=1.9e-05  Score=61.00  Aligned_cols=65  Identities=17%  Similarity=0.187  Sum_probs=54.2

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----h--------HHHHHHHHHHHHHHHHHHHhh-cCCc
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----H--------WQIVCYFCAATACISFIIVTF-MPET   69 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~--------Wr~~~~~~~~~~~l~~~~~~~-~pES   69 (164)
                      ...++.|++|+++|++..+..+.+..+|.++++.++..+    +        ||..+++.++..++..+..++ .||+
T Consensus       104 ~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       104 LDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEP  181 (356)
T ss_pred             HHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            455789999999999999999999999999999988665    6        999999998877666655543 5775

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.11  E-value=2.2e-05  Score=63.84  Aligned_cols=68  Identities=19%  Similarity=0.183  Sum_probs=57.4

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHHHhhcCCchH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFIIVTFMPETPA   71 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~~~~~~pESp~   71 (164)
                      ....++.|+.|+++||+..++.+.++.+|.++++.++..+     +||..+++.++..++..+..+++||+++
T Consensus       127 ~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~  199 (491)
T PRK11010        127 VFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTD  199 (491)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            3456889999999999999999999999999998776655     7999999988887777666667899865

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.09  E-value=4.3e-06  Score=64.37  Aligned_cols=69  Identities=16%  Similarity=0.170  Sum_probs=54.4

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHH-HHHHhH----hHHHHHHHHHHHHHHH-HHHHhhcCCchH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVY-YAGYML----HWQIVCYFCAATACIS-FIIVTFMPETPA   71 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~-~~~~~~----~Wr~~~~~~~~~~~l~-~~~~~~~pESp~   71 (164)
                      +....++.|+.|+++|++..++.+.+..+|..+++ .++...    +||+.+.+.++..++. .+..++.||+|+
T Consensus       102 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (379)
T TIGR00881       102 PPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQ  176 (379)
T ss_pred             CchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCcc
Confidence            45667899999999999999999999999999998 454433    9999998887765554 444556788765

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.08  E-value=2.6e-05  Score=61.53  Aligned_cols=69  Identities=17%  Similarity=0.153  Sum_probs=56.6

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHHHhhcCCchHH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFIIVTFMPETPAW   72 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~~~~~~pESp~~   72 (164)
                      ....++.|+.|+++|++..+....+..+|.++++.++..+     +||..+++.++..++..+..+++||+++.
T Consensus       114 ~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~  187 (402)
T PRK11902        114 VFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVP  187 (402)
T ss_pred             HHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            3456789999999999999999999999999998877655     89999998887766665556678887653

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.08  E-value=7.7e-05  Score=57.14  Aligned_cols=61  Identities=13%  Similarity=0.031  Sum_probs=51.1

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHh
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVT   64 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~   64 (164)
                      ....++.|+.|+++|++..+..+.+..+|.++++.++..+    +||+.+++..+..++..+..+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  176 (365)
T TIGR00900       112 AYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV  176 (365)
T ss_pred             HHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999988776    999999888776655544433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.02  E-value=4.5e-05  Score=63.96  Aligned_cols=68  Identities=19%  Similarity=0.351  Sum_probs=54.7

Q ss_pred             CccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH--------------------------hHHHHHHHHHHH
Q psy66             2 GSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML--------------------------HWQIVCYFCAAT   55 (164)
Q Consensus         2 ~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~--------------------------~Wr~~~~~~~~~   55 (164)
                      .+.+..|+.|+.|+++|+...++.+.+..+|..+++.++..+                          .||..|++.+++
T Consensus       190 ~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l  269 (633)
T TIGR00805       190 FPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGV  269 (633)
T ss_pred             hhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHH
Confidence            356778999999999999999999999999999998887654                          177778887777


Q ss_pred             HHHHHHHHhhcCCc
Q psy66            56 ACISFIIVTFMPET   69 (164)
Q Consensus        56 ~~l~~~~~~~~pES   69 (164)
                      .++..+..+++|+.
T Consensus       270 ~~l~~v~l~~~p~~  283 (633)
T TIGR00805       270 ALLTSIPFFFFPKA  283 (633)
T ss_pred             HHHHHHHHHhCccc
Confidence            76665555667765

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.96  E-value=3.3e-05  Score=58.98  Aligned_cols=69  Identities=23%  Similarity=0.367  Sum_probs=55.7

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHH-HhhcCCchH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFII-VTFMPETPA   71 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~-~~~~pESp~   71 (164)
                      +....++.|+.|+++|++..+..+.+..+|.++++.++...    +||+.+++.++..++..+. ..+++|.|+
T Consensus       104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~  177 (352)
T PF07690_consen  104 PASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPP  177 (352)
T ss_dssp             HHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---ST
T ss_pred             ccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccc
Confidence            34567899999999999999999999999999999998877    8999999998887777553 355665543

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.92  E-value=1.5e-05  Score=62.97  Aligned_cols=68  Identities=15%  Similarity=0.221  Sum_probs=56.1

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHH--HhH----hHHHHHHHHHHHHHHHHH-HHhhcCCchH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAG--YML----HWQIVCYFCAATACISFI-IVTFMPETPA   71 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~--~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp~   71 (164)
                      .+...++.+.|+++||+..++.+..-++|..+.+.+.  ..+    +||..|+++++.+++..+ ..+.+.|+|.
T Consensus       137 p~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq  211 (448)
T COG2271         137 PCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ  211 (448)
T ss_pred             HHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            3455788999999999999999999999998888887  444    999999999999877754 4555677774

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.91  E-value=0.00028  Score=55.65  Aligned_cols=69  Identities=16%  Similarity=0.092  Sum_probs=52.9

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhhcCCchH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML---HWQIVCYFCAATACISFIIVTFMPETPA   71 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~---~Wr~~~~~~~~~~~l~~~~~~~~pESp~   71 (164)
                      ++...++.|+.|+++|+++.+..+....+|.++++.++..+   .|+..+.+.....++..+...++||+|+
T Consensus       107 pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~  178 (393)
T PRK11195        107 PAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRLGA  178 (393)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            45567899999999999999999999999999999998877   4555555544444444445567899764

>PTZ00207 hypothetical protein; Provisional

Probab=97.90  E-value=6e-05  Score=62.57  Aligned_cols=87  Identities=14%  Similarity=0.156  Sum_probs=61.4

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHH-HHHHHHhH--hHHHHHHHHHHHHHHH-HHHHhh--cCCchHHHHhcC
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLF-VYYAGYML--HWQIVCYFCAATACIS-FIIVTF--MPETPAWYASKG   77 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll-~~~~~~~~--~Wr~~~~~~~~~~~l~-~~~~~~--~pESp~~l~~~~   77 (164)
                      .+...+.++.| ++||++.++...+.++|..+ +++.....  +|+..+++.++.+++. ++...+  .|++|+|...++
T Consensus       140 ~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~  218 (591)
T PTZ00207        140 GAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEK  218 (591)
T ss_pred             HHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhccccc
Confidence            34556788886 78999999999999999975 44444444  8888777666654444 333333  588888888887


Q ss_pred             CHHHHHHHHHHHhC
Q psy66            78 LVVKSSASLNWLRN   91 (164)
Q Consensus        78 ~~~~a~~~l~~i~~   91 (164)
                      +.+++++..++..+
T Consensus       219 ~~~~~~~~~~~~~~  232 (591)
T PTZ00207        219 HLDEEEKAQRLMRK  232 (591)
T ss_pred             CCCHHHHHHHhhhh
Confidence            77777776666544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.89  E-value=0.00038  Score=55.87  Aligned_cols=68  Identities=18%  Similarity=0.114  Sum_probs=51.1

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHHHH-HHHHHHHHhH----hHHHHHHHHHHHHHHH-HHHHhhcCCchHH
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSLGV-LFVYYAGYML----HWQIVCYFCAATACIS-FIIVTFMPETPAW   72 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~-ll~~~~~~~~----~Wr~~~~~~~~~~~l~-~~~~~~~pESp~~   72 (164)
                      ....+.|+.|+++||+..++.+.+..+|. +.+++++...    +||+.+++.+++.++. ++..+++||+|+.
T Consensus       141 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~  214 (452)
T PRK11273        141 CGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQS  214 (452)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhh
Confidence            34567899999999999999999988876 4455543222    9999999888776554 4556678998864

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.88  E-value=0.00036  Score=56.02  Aligned_cols=69  Identities=14%  Similarity=0.218  Sum_probs=56.2

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH-HHhhcCCchH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI-IVTFMPETPA   71 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp~   71 (164)
                      +....++.|+.|+++|++..++...+..+|..+++.++..+    +||+.+++...+.++..+ ..+++||.++
T Consensus       109 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  182 (485)
T TIGR00711       109 PLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP  182 (485)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence            34567889999999999999999999999999999998776    999999988877655544 4455777554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.87  E-value=0.00014  Score=57.86  Aligned_cols=67  Identities=24%  Similarity=0.280  Sum_probs=55.4

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHH-HhhcCCchH
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFII-VTFMPETPA   71 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~-~~~~pESp~   71 (164)
                      ...++.|..|+++|++..+.......+|..+++.++..+    +||+.|++.++..++.++. .+++||+++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        125 GYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            456788999999999999999999999999998888766    8999999988887666544 456899864

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.87  E-value=0.00013  Score=57.56  Aligned_cols=65  Identities=18%  Similarity=0.260  Sum_probs=55.2

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHH-HhhcC
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFII-VTFMP   67 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~-~~~~p   67 (164)
                      +.+..+..++.|+++|+++.++...+..++..++..++.++    |||..|++.+..+++.++. ...+|
T Consensus       120 ~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         120 SIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            34566789999999999999999999999888888888777    9999999999988777655 45678

>PRK03545 putative arabinose transporter; Provisional

Probab=97.85  E-value=5.9e-05  Score=59.13  Aligned_cols=68  Identities=15%  Similarity=0.237  Sum_probs=55.6

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH-HHhhcCCchH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI-IVTFMPETPA   71 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp~   71 (164)
                      ....++.|+.|+++|++..+..+.+..+|..+++.++...    +||+.+++.++.+++..+ ...++||.|+
T Consensus       117 ~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~  189 (390)
T PRK03545        117 ITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS  189 (390)
T ss_pred             HHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            3456889999999999999999999999999999888665    999999998887666543 3455787653

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.85  E-value=7.5e-05  Score=58.92  Aligned_cols=69  Identities=17%  Similarity=0.195  Sum_probs=56.1

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH-HHhhcCCchH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI-IVTFMPETPA   71 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp~   71 (164)
                      +..+.++.|+.|+++|++..+....+.++|.++++.++..+    +||+.+.+.++.+++..+ ....+||+|+
T Consensus       127 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~  200 (394)
T PRK10213        127 AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPG  200 (394)
T ss_pred             HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCc
Confidence            34567889999999999999999999999999999998776    999999988776655443 3345798764

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.82  E-value=0.00018  Score=55.72  Aligned_cols=68  Identities=16%  Similarity=0.152  Sum_probs=55.2

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH-HHhhcCCchH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI-IVTFMPETPA   71 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp~   71 (164)
                      ....++.|+.|+++|++..+..+....+|..+++.++...    +||..+.+.++..++..+ ..++.||+++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (385)
T TIGR00710       113 ISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLP  185 (385)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            4567889999999999999999999999999998888765    899999887776555543 4456788764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.75  E-value=0.00017  Score=47.42  Aligned_cols=66  Identities=29%  Similarity=0.405  Sum_probs=53.1

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHH-HhhcCCc
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFII-VTFMPET   69 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~-~~~~pES   69 (164)
                      ....++.|..|++.|++..+..+....+|..+++.+....    +|++.+.+..+..++..+. .++.||+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        71 AGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             hHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            4456789999999999999999999999999999888777    8999888877776655444 4445664

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.72  E-value=0.00015  Score=57.88  Aligned_cols=68  Identities=19%  Similarity=0.189  Sum_probs=53.6

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHh-H----hHHHHHHHHHHHHHHH-HHHHhhcCCchHH
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYM-L----HWQIVCYFCAATACIS-FIIVTFMPETPAW   72 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~-~----~Wr~~~~~~~~~~~l~-~~~~~~~pESp~~   72 (164)
                      ...++.|+.|+++||+..++.+.+..+|..+++.+... .    +||..+++.+++.++. ++..+++||+|+.
T Consensus       139 ~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~  212 (438)
T TIGR00712       139 CGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQS  212 (438)
T ss_pred             HHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHh
Confidence            45577899999999999999999999988887765432 2    8999999988876664 4455668998865

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.67  E-value=0.0004  Score=53.60  Aligned_cols=68  Identities=15%  Similarity=0.129  Sum_probs=45.1

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH--------------hHHHHH-HHHHHH-HHHHHHHHhhcC
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML--------------HWQIVC-YFCAAT-ACISFIIVTFMP   67 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~--------------~Wr~~~-~~~~~~-~~l~~~~~~~~p   67 (164)
                      ....++.|+.|+++|+...++...+..+|..+++.++..+              +||+.+ ....+. .+...+...+.+
T Consensus       110 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  189 (366)
T TIGR00886       110 SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGA  189 (366)
T ss_pred             hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcc
Confidence            3456889999999999999998866666665555544322              599988 443433 333344455667


Q ss_pred             CchH
Q psy66            68 ETPA   71 (164)
Q Consensus        68 ESp~   71 (164)
                      |+|+
T Consensus       190 ~~~~  193 (366)
T TIGR00886       190 DTPP  193 (366)
T ss_pred             cCCc
Confidence            8764

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.66  E-value=0.0005  Score=53.37  Aligned_cols=68  Identities=16%  Similarity=0.271  Sum_probs=55.2

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHH-HHHhhcCCchH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISF-IIVTFMPETPA   71 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~-~~~~~~pESp~   71 (164)
                      ....++.|+.|+++|++..++.+.+..+|..+++.++...    +||+.+.+.++..++.. +..+++||+++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (377)
T PRK11102         99 VINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLP  171 (377)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            3456889999999999999999999999999999887666    99999988877765554 44567888753

>KOG2615|consensus

Probab=97.65  E-value=0.00018  Score=56.47  Aligned_cols=67  Identities=24%  Similarity=0.227  Sum_probs=51.2

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-h--------H-HHHHHHHHHHHHH-HHHHHhhcCCch
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-H--------W-QIVCYFCAATACI-SFIIVTFMPETP   70 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-~--------W-r~~~~~~~~~~~l-~~~~~~~~pESp   70 (164)
                      ++-++++|+.++++|+..++.++..+++|.++||.++.++ -        | -.+.++..+.+.. .+...|++||+-
T Consensus       140 v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL  217 (451)
T KOG2615|consen  140 VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL  217 (451)
T ss_pred             HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            4557899999999999999999999999999999998877 1        1 2223444444444 456678999993

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.65  E-value=0.00028  Score=55.26  Aligned_cols=66  Identities=15%  Similarity=0.133  Sum_probs=53.4

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH-HHhhcCCch
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI-IVTFMPETP   70 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp   70 (164)
                      ...++.|+.|+++|++..+....+..+|..+++.++...    +||+.+.+.++..++..+ ...++||.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        112 GAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             HHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            456788999999999999999999999999888887665    999999998887655544 445689875

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.64  E-value=0.00036  Score=55.20  Aligned_cols=68  Identities=15%  Similarity=0.055  Sum_probs=55.8

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCchHH
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPETPAW   72 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pESp~~   72 (164)
                      ...++.|+.|+++|++..++.+....+|..+++.++..+    +||+.+.+..+..++..+..+.+||+++.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  202 (417)
T PRK10489        131 LLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPP  202 (417)
T ss_pred             HhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            345678999999999999999999999999999988765    89999988887776666666778887643

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.59  E-value=0.00054  Score=53.98  Aligned_cols=69  Identities=26%  Similarity=0.242  Sum_probs=53.1

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH-HHhhcCCchHH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI-IVTFMPETPAW   72 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp~~   72 (164)
                      ....++.|..|++.|++..++......+|..+++.++...    +||+.+++.++..++..+ ..+.+||+++.
T Consensus       121 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (406)
T PRK15402        121 VGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGR  194 (406)
T ss_pred             HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence            4456788999999999988888877778888888876655    999999888777665544 34567988653

>PRK12382 putative transporter; Provisional

Probab=97.56  E-value=0.00036  Score=54.67  Aligned_cols=66  Identities=9%  Similarity=0.059  Sum_probs=50.8

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPETP   70 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pESp   70 (164)
                      ...++.|+.|+++|+++.+..+.+..+|..+++.++...    +||.++.+..+..++.+......||.+
T Consensus       133 ~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (392)
T PRK12382        133 ALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNGTVRKVP  202 (392)
T ss_pred             HHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            345778999999999999999999999999998887665    999887776665554444444556654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.56  E-value=0.00035  Score=59.63  Aligned_cols=67  Identities=10%  Similarity=0.008  Sum_probs=54.1

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML---HWQIVCYFCAATACISFIIVTFMPETP   70 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~---~Wr~~~~~~~~~~~l~~~~~~~~pESp   70 (164)
                      +..++++|+.|.+.||+..++.+....+|.++++.++..+   +...++++.++..++..+...++||+.
T Consensus       668 ~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       668 ALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            4567899999999999999999999999999999998655   445667666666666666666789974

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.54  E-value=0.00023  Score=55.03  Aligned_cols=68  Identities=15%  Similarity=0.141  Sum_probs=49.3

Q ss_pred             hhhhhhccCchhHHHH--HhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHH-HhhcCCchHHH
Q psy66             6 YVYVSEISLPAYRGLF--ASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFII-VTFMPETPAWY   73 (164)
Q Consensus         6 ~~~i~E~~p~~~Rg~~--~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~-~~~~pESp~~l   73 (164)
                      ..+..|+.|++.|+..  .+....+.++|..+++.++...    +||+.+++.+++.++..+. .+++||+|+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  183 (375)
T TIGR00899       109 FALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGA  183 (375)
T ss_pred             HHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCc
Confidence            3456788887777643  4666677778888888877655    8999999988876665544 45589988653

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.53  E-value=0.00061  Score=53.36  Aligned_cols=68  Identities=16%  Similarity=0.201  Sum_probs=54.6

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHH-HHHhhcCCchH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISF-IIVTFMPETPA   71 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~-~~~~~~pESp~   71 (164)
                      ....++.|..|+++|++..+..+....+|.++++.++...    +||+.+.+..+..++.. +..+++||+++
T Consensus       111 ~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~  183 (392)
T PRK10473        111 VAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRP  183 (392)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            3556889999999999999999999999999998887665    89999988877665554 34566788753

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.46  E-value=0.00059  Score=53.52  Aligned_cols=67  Identities=10%  Similarity=0.028  Sum_probs=51.4

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPETP   70 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pESp   70 (164)
                      ....++.|..|+++|++..++.+.+..+|.++++.++..+    +||..+++..+.+++.+......||++
T Consensus       132 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (399)
T PRK05122        132 GSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVP  202 (399)
T ss_pred             hHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            3456678999999999999999999999988888887665    999998877776655544444456543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.44  E-value=0.00073  Score=54.95  Aligned_cols=64  Identities=14%  Similarity=0.200  Sum_probs=50.7

Q ss_pred             hhhhc-cCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHH-HHHhhcCCchH
Q psy66             8 YVSEI-SLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISF-IIVTFMPETPA   71 (164)
Q Consensus         8 ~i~E~-~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~-~~~~~~pESp~   71 (164)
                      .+.+. .|+++|++..++......+|..+++.++..+    +||+.|++.....++.. +..+++||+|.
T Consensus       118 ~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~  187 (495)
T PRK14995        118 GIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG  187 (495)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            34444 5889999999999999999999999998877    99999998766555443 44566888763

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.41  E-value=0.0013  Score=58.49  Aligned_cols=70  Identities=16%  Similarity=0.090  Sum_probs=51.2

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH--h-----------HHHHHHHHHH-HHHHHHHHHhhcCC
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML--H-----------WQIVCYFCAA-TACISFIIVTFMPE   68 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~--~-----------Wr~~~~~~~~-~~~l~~~~~~~~pE   68 (164)
                      ++...++.|++|+++|+++.++.+.+..+|.++++.++..+  .           |++.+.+..+ ..++.++..+.+||
T Consensus       122 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (1146)
T PRK08633        122 PAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPK  201 (1146)
T ss_pred             hHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcC
Confidence            44567899999999999999999999999999999888765  2           3344433333 33444455667899


Q ss_pred             chHH
Q psy66            69 TPAW   72 (164)
Q Consensus        69 Sp~~   72 (164)
                      +|+.
T Consensus       202 ~~~~  205 (1146)
T PRK08633        202 VPAA  205 (1146)
T ss_pred             CCCC
Confidence            8764

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.39  E-value=0.0019  Score=52.34  Aligned_cols=63  Identities=14%  Similarity=0.098  Sum_probs=43.3

Q ss_pred             hhhhhhccCchhHHHHHhHHHHHHHHHHHHH----HHHHHh---------HhHHHHHHHHHHHHHHHHHHHhhcCC
Q psy66             6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFV----YYAGYM---------LHWQIVCYFCAATACISFIIVTFMPE   68 (164)
Q Consensus         6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~----~~~~~~---------~~Wr~~~~~~~~~~~l~~~~~~~~pE   68 (164)
                      ..++.|+.|+++||...++.+.+..+|..++    +.+...         .+||+.+++.+++.++..+..+++++
T Consensus       145 ~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~  220 (476)
T PLN00028        145 QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQ  220 (476)
T ss_pred             HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4468899999999999998875555555444    433221         27999999988887666555444443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.38  E-value=0.0018  Score=51.17  Aligned_cols=65  Identities=23%  Similarity=0.248  Sum_probs=52.2

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHH-HHHhhcCCc
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML---HWQIVCYFCAATACISF-IIVTFMPET   69 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~---~Wr~~~~~~~~~~~l~~-~~~~~~pES   69 (164)
                      ...++.|..|+++|++..++......+|..+++.++..+   +||+.+++.++..++.. +..+++||.
T Consensus       120 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        120 RTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAY  188 (400)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            456788999999999999999999999999999888776   99999998877655443 334556763

>PRK11043 putative transporter; Provisional

Probab=97.37  E-value=0.0017  Score=51.04  Aligned_cols=65  Identities=12%  Similarity=0.020  Sum_probs=50.9

Q ss_pred             hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66             6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPETP   70 (164)
Q Consensus         6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pESp   70 (164)
                      ..++.|..|+++|+...+.......+|..+++.++...    +||..+.+..+..++..+..++++|++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (401)
T PRK11043        116 QALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSK  184 (401)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            45678999999998888888777888888888777665    999999988887776666666666654

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.34  E-value=0.0014  Score=51.42  Aligned_cols=66  Identities=15%  Similarity=0.093  Sum_probs=52.3

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH-HHhhcCCch
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI-IVTFMPETP   70 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp   70 (164)
                      ...++.|..|+++|++..+.......+|.++++.++..+    +||..+.+..+..++..+ ..+++||.+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (408)
T PRK09874        127 ANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENF  197 (408)
T ss_pred             HHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            345678999999999999999999999999998887765    999999888877655544 445567764

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.29  E-value=0.00087  Score=50.82  Aligned_cols=65  Identities=20%  Similarity=0.252  Sum_probs=54.4

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcC
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMP   67 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~p   67 (164)
                      +....++.|+.|+++|++..+..+....+|..+++.++...    +||+.+.+..++.++..+...+++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (352)
T cd06174         106 PAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL  174 (352)
T ss_pred             HhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567899999999999999999999999999999998877    799999988887766655554444

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.28  E-value=0.0016  Score=52.80  Aligned_cols=71  Identities=17%  Similarity=0.194  Sum_probs=54.2

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH---hHHHHHHHH---HHHHHHHHHHHhhcCCchHHHH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML---HWQIVCYFC---AATACISFIIVTFMPETPAWYA   74 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~---~Wr~~~~~~---~~~~~l~~~~~~~~pESp~~l~   74 (164)
                      +...|+..+.|+++|+++.+....+..+|.++++.++..+   +||...-..   ....++.++.-+++|--+|=+.
T Consensus       134 A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~  210 (511)
T TIGR00806       134 AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLF  210 (511)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhh
Confidence            3456899999999999999999999999999999997767   888755443   3334444566678885555444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG1330|consensus

Probab=97.17  E-value=2.7e-05  Score=62.07  Aligned_cols=70  Identities=13%  Similarity=0.129  Sum_probs=59.8

Q ss_pred             CccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHH-HhhcCCchH
Q psy66             2 GSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFII-VTFMPETPA   71 (164)
Q Consensus         2 ~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~~-~~~~pESp~   71 (164)
                      .+++|.+++|..|...|++..+++++...+|..+++..+..+     .|||-+...++.+++..++ .++.+|-.|
T Consensus       139 ~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  139 SPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             cccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence            367899999999999999999999999999999999988877     6999999999887777554 556677543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.17  E-value=0.0029  Score=48.58  Aligned_cols=64  Identities=9%  Similarity=-0.022  Sum_probs=45.7

Q ss_pred             hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHh-H---hHHHHHHHHHHHHHHHHHHH-hhcCCch
Q psy66             6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYM-L---HWQIVCYFCAATACISFIIV-TFMPETP   70 (164)
Q Consensus         6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~-~---~Wr~~~~~~~~~~~l~~~~~-~~~pESp   70 (164)
                      ..++.|+.| ++|++..+....+..+|.++++.+... .   +||+.+.+.+++.++..+.. ++++|.|
T Consensus       113 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  181 (377)
T TIGR00890       113 LNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPP  181 (377)
T ss_pred             HHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCc
Confidence            345677776 579999999999999998765544433 3   89999999888776665444 4455544

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.16  E-value=0.0028  Score=49.66  Aligned_cols=66  Identities=18%  Similarity=0.183  Sum_probs=52.3

Q ss_pred             hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHH-HHHHhhcCCchH
Q psy66             6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACIS-FIIVTFMPETPA   71 (164)
Q Consensus         6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~-~~~~~~~pESp~   71 (164)
                      ..+..|..+++.|+...+..+.+..+|.++++.++...    +||+.+.+..+..++. ++..+++||+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        118 RTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            44667888999999999999999999998888887665    8999999887765544 344567899864

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.15  E-value=0.0035  Score=50.35  Aligned_cols=82  Identities=20%  Similarity=0.201  Sum_probs=54.6

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHh----------HhHHHHHHHHHHHHHHHHHH-HhhcCCchH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYM----------LHWQIVCYFCAATACISFII-VTFMPETPA   71 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~----------~~Wr~~~~~~~~~~~l~~~~-~~~~pESp~   71 (164)
                      +..++++.|..|++.||...++.+....+|.++++.+...          .+|+..+.+.++..++..+. .++.||+.+
T Consensus       383 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  462 (479)
T PRK10077        383 PVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG  462 (479)
T ss_pred             chhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCC
Confidence            3456789999999999999999998888888777544321          16777777766655544443 445788742


Q ss_pred             HHHhcCCHHHHHHHHHHH
Q psy66            72 WYASKGLVVKSSASLNWL   89 (164)
Q Consensus        72 ~l~~~~~~~~a~~~l~~i   89 (164)
                           .+.||.++..++.
T Consensus       463 -----~~~~~~~~~~~~~  475 (479)
T PRK10077        463 -----KTLEEMEALWEPE  475 (479)
T ss_pred             -----CCHHHHHHHHhhc
Confidence                 2345554444433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.15  E-value=0.0011  Score=55.14  Aligned_cols=57  Identities=14%  Similarity=0.296  Sum_probs=38.4

Q ss_pred             hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHH
Q psy66             6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFII   62 (164)
Q Consensus         6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~   62 (164)
                      ...++|+.|.|+|+................++.++...    +|||.+++..+...+.++.
T Consensus       152 ~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  152 ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL  212 (599)
T ss_pred             HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence            34579999999998777666554444433444444333    9999999888875555443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.10  E-value=0.0015  Score=58.22  Aligned_cols=68  Identities=13%  Similarity=0.116  Sum_probs=56.7

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPETP   70 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pESp   70 (164)
                      ++...++.|+.|++.|+++.++.+.+.++|.++++.++..+    +|++.++...+..++.++..+++||++
T Consensus       127 p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (1140)
T PRK06814        127 PIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTG  198 (1140)
T ss_pred             hHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            45667889999999999999999999999999999999887    999998666666666666667777764

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.05  E-value=0.0094  Score=46.72  Aligned_cols=62  Identities=11%  Similarity=-0.042  Sum_probs=47.1

Q ss_pred             hhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCC
Q psy66             7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPE   68 (164)
Q Consensus         7 ~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pE   68 (164)
                      .+..|..+++.++...+....+..+|.++++......    +||..+++.++..++..+..++++|
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~  185 (390)
T TIGR02718       120 GMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKD  185 (390)
T ss_pred             HHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3567888888888888888888888998888765544    9999999888877665555555544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK03699 putative transporter; Provisional

Probab=97.04  E-value=0.0037  Score=49.19  Aligned_cols=60  Identities=15%  Similarity=0.145  Sum_probs=46.9

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHHH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFIIV   63 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~~~   63 (164)
                      ....++.|+.|+++|+...+..+....+|..+++.+....     +||+.+.+.+++.++..+..
T Consensus       115 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        115 IGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT  179 (394)
T ss_pred             chhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            4556788999999999999888888888888887775443     89999998887766554443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.01  E-value=0.01  Score=47.20  Aligned_cols=60  Identities=12%  Similarity=0.089  Sum_probs=47.3

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH------------------------------hHHHHHHHH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML------------------------------HWQIVCYFC   52 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~------------------------------~Wr~~~~~~   52 (164)
                      +.+..++.|+.|+++|++..+..+.+.++|..+++.++..+                              +||+.+.+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~  192 (410)
T TIGR00885       113 TAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMII  192 (410)
T ss_pred             hhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888999999999999999999999998888876533                              499999887


Q ss_pred             HHHHHHHHHH
Q psy66            53 AATACISFII   62 (164)
Q Consensus        53 ~~~~~l~~~~   62 (164)
                      ++..++..+.
T Consensus       193 a~~~~~~~~~  202 (410)
T TIGR00885       193 GAVVLAVALL  202 (410)
T ss_pred             HHHHHHHHHH
Confidence            7765554433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.01  E-value=0.00041  Score=55.87  Aligned_cols=69  Identities=16%  Similarity=0.079  Sum_probs=52.7

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-------hHHHHHHHHHHHHHHHHH-HHhhcCCchH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-------HWQIVCYFCAATACISFI-IVTFMPETPA   71 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-------~Wr~~~~~~~~~~~l~~~-~~~~~pESp~   71 (164)
                      +....++.|+.|+++||++.++.+.+.++|.++++.++...       +||..+.+.+++.++..+ ..++.+|+|.
T Consensus       141 ~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~  217 (467)
T PRK09556        141 PCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPE  217 (467)
T ss_pred             hHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChh
Confidence            34557899999999999999999999999999988876433       589888887777655533 3445566664

>TIGR00889 2A0110 nucleoside transporter

Probab=97.01  E-value=0.002  Score=51.29  Aligned_cols=67  Identities=21%  Similarity=0.267  Sum_probs=52.8

Q ss_pred             cchhhhhhccCchhHHHHHhHHH-HHHHHHHHHHHHHHHhH----------hHHHHHHHHHHHHHHHH-HHHhhcCCch
Q psy66             4 STYVYVSEISLPAYRGLFASLGP-VFVSLGVLFVYYAGYML----------HWQIVCYFCAATACISF-IIVTFMPETP   70 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~-~~~~~G~ll~~~~~~~~----------~Wr~~~~~~~~~~~l~~-~~~~~~pESp   70 (164)
                      ....++.|..|++.||+..++.+ ..+++|..+++.+++.+          +|+..+.+.++..++.. +..++++|+.
T Consensus       328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            44677899999999999999997 67888999998888765          29999888877765554 4456678873

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10504 putative transporter; Provisional

Probab=96.93  E-value=0.0037  Score=50.23  Aligned_cols=67  Identities=16%  Similarity=0.145  Sum_probs=52.4

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH-HHhhcCCch
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI-IVTFMPETP   70 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp   70 (164)
                      ....++.|..|+++|+...+.......+|..+++.++..+    +||+.|.+......+..+ .....|+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  189 (471)
T PRK10504        118 VGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYT  189 (471)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            4566789999999999999999999999999999888766    999999887766554443 334456543

>PRK15011 sugar efflux transporter B; Provisional

Probab=96.91  E-value=0.0034  Score=49.38  Aligned_cols=65  Identities=18%  Similarity=0.211  Sum_probs=46.5

Q ss_pred             hhhhhhccCchhH--HHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH-HHhhcCCch
Q psy66             6 YVYVSEISLPAYR--GLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI-IVTFMPETP   70 (164)
Q Consensus         6 ~~~i~E~~p~~~R--g~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp   70 (164)
                      ..++.|..+++.|  +...+..+.+.++|.++++.++..+    +||..+++.++..++..+ ...++||+|
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        127 FALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence            3455676666555  4455777888888888888888766    999999888876655544 445678875

>PRK10054 putative transporter; Provisional

Probab=96.90  E-value=0.0031  Score=49.80  Aligned_cols=66  Identities=11%  Similarity=0.162  Sum_probs=52.4

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHH-HHhhcCCc
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML---HWQIVCYFCAATACISFI-IVTFMPET   69 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~---~Wr~~~~~~~~~~~l~~~-~~~~~pES   69 (164)
                      ....+..|..|+++|++..++.....++|..+++.++...   +||..+.+.++..++..+ ..+++||.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        116 VLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             HHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3456778999999999999999999999999999988776   899999887776655543 33446665

>PRK15011 sugar efflux transporter B; Provisional

Probab=96.88  E-value=0.0043  Score=48.80  Aligned_cols=63  Identities=10%  Similarity=0.158  Sum_probs=52.2

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCC
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPE   68 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pE   68 (164)
                      .+.+..|..|. .||...++.+....+|..+++.++..+    +|+..+.+..++.++.++..+++||
T Consensus       326 ~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        326 GMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            44667899886 599999998888889999999888776    8999999888888888777777776

>TIGR00898 2A0119 cation transport protein

Probab=96.85  E-value=0.004  Score=50.47  Aligned_cols=67  Identities=19%  Similarity=0.308  Sum_probs=53.1

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML--HWQIVCYFCAATACISFIIVTFMPETP   70 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~--~Wr~~~~~~~~~~~l~~~~~~~~pESp   70 (164)
                      ..+++..|..|++.|+...++.+....+|.+++|.+....  ++...+.+.++.+++..+...++||+.
T Consensus       430 ~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~  498 (505)
T TIGR00898       430 MVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK  498 (505)
T ss_pred             HHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence            4567889999999999999999999999999999988733  556666666666666666667889964

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=96.79  E-value=0.013  Score=46.52  Aligned_cols=64  Identities=22%  Similarity=0.197  Sum_probs=46.2

Q ss_pred             hhhhhcc-CchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----------hHHHHHHHHHHHHHHHHH-HHhhcCCch
Q psy66             7 VYVSEIS-LPAYRGLFASLGPVFVSLGVLFVYYAGYML-----------HWQIVCYFCAATACISFI-IVTFMPETP   70 (164)
Q Consensus         7 ~~i~E~~-p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----------~Wr~~~~~~~~~~~l~~~-~~~~~pESp   70 (164)
                      .+..|++ ++++|++..+..+.+..+|.++++.+...+           +||+.+.+.++..++..+ ..++++|.+
T Consensus       122 al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       122 SLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             hCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence            4567887 578999999998888888877665543221           799998888887666544 445678764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=96.78  E-value=0.0053  Score=50.08  Aligned_cols=52  Identities=13%  Similarity=0.160  Sum_probs=42.5

Q ss_pred             ccchhhhhhccCch--hHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHH
Q psy66             3 SSTYVYVSEISLPA--YRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAA   54 (164)
Q Consensus         3 ~~~~~~i~E~~p~~--~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~   54 (164)
                      +....++.|..|++  +|+...+....++++|..+++.++.++    +||+.|++..+
T Consensus       124 ~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i  181 (489)
T PRK10207        124 ANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA  181 (489)
T ss_pred             CCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence            45678899999877  457778888999999998888887766    99999988654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=96.70  E-value=0.0063  Score=46.09  Aligned_cols=63  Identities=24%  Similarity=0.231  Sum_probs=54.0

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhh
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTF   65 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~   65 (164)
                      +....++.|..|+++|++..++.+....+|..+++.+....    +|+..+.+.++..++..+...+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         284 PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             hhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence            45567889999999999999999999999999999998776    8999999988887777665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=96.69  E-value=0.0084  Score=47.01  Aligned_cols=62  Identities=15%  Similarity=0.118  Sum_probs=48.4

Q ss_pred             hhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCC
Q psy66             7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPE   68 (164)
Q Consensus         7 ~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pE   68 (164)
                      ..+.|..|++.||+..++.+....+|..+++.+....    +|+..+.+.++..++..+..+++++
T Consensus       325 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        325 VEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4567889999999999999999999987777665555    8999988888777666655554444

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=96.67  E-value=0.0039  Score=49.33  Aligned_cols=67  Identities=25%  Similarity=0.194  Sum_probs=52.9

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHH-hhcCCch
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIV-TFMPETP   70 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~-~~~pESp   70 (164)
                      ...+++.|..|++.||...++.+....+|.++++.+....    +|++.+++.++.+++..+.. ++.||++
T Consensus       403 ~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       403 VPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             eehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCC
Confidence            3456679999999999999999999999999999887665    79988887777766555444 4567754

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00896 CynX cyanate transporter

Probab=96.56  E-value=0.034  Score=42.91  Aligned_cols=52  Identities=21%  Similarity=0.135  Sum_probs=39.8

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH------hHHHHHHHHHHHH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML------HWQIVCYFCAATA   56 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~------~Wr~~~~~~~~~~   56 (164)
                      ..+.++.|..| ++|++..+..+.+..+|..+++.+...+      +||+.+.+..+..
T Consensus       107 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~  164 (355)
T TIGR00896       107 LLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPA  164 (355)
T ss_pred             cchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            44567788876 6899999999999999998888776554      3998887665543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01272 gluP glucose/galactose transporter

Probab=96.55  E-value=0.011  Score=45.24  Aligned_cols=68  Identities=21%  Similarity=0.145  Sum_probs=51.7

Q ss_pred             CccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH--------------------hHHHHHHHHHHHHHHHHH
Q psy66             2 GSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML--------------------HWQIVCYFCAATACISFI   61 (164)
Q Consensus         2 ~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~--------------------~Wr~~~~~~~~~~~l~~~   61 (164)
                      .+++..|+.++.|++.+.+.+++.+.++++|.+++|+++...                    +|++++.+.+...++..+
T Consensus        28 q~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i  107 (310)
T TIGR01272        28 QVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAI  107 (310)
T ss_pred             HhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788999999999999999999999999999999998732                    588888855544333333


Q ss_pred             HH--hhcCCc
Q psy66            62 IV--TFMPET   69 (164)
Q Consensus        62 ~~--~~~pES   69 (164)
                      ..  .-+||.
T Consensus       108 ~~~~~~~p~~  117 (310)
T TIGR01272       108 IFAFLPLPEL  117 (310)
T ss_pred             HHHHccCCCC
Confidence            33  235764

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=96.47  E-value=0.0091  Score=48.63  Aligned_cols=67  Identities=16%  Similarity=0.221  Sum_probs=48.1

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-h-------------HHHHHHHHHHHHHHHHHHHhhcCCc
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-H-------------WQIVCYFCAATACISFIIVTFMPET   69 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-~-------------Wr~~~~~~~~~~~l~~~~~~~~pES   69 (164)
                      ....+..|+.|++.|++..++.+....+|.++++.+.... +             +...+.+-++..++..+..+++||+
T Consensus       412 ~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt  491 (502)
T TIGR00887       412 TTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPET  491 (502)
T ss_pred             hhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccC
Confidence            3456789999999999999999999999998888776544 2             2344454444444444455678997


Q ss_pred             h
Q psy66            70 P   70 (164)
Q Consensus        70 p   70 (164)
                      .
T Consensus       492 ~  492 (502)
T TIGR00887       492 K  492 (502)
T ss_pred             C
Confidence            4

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=96.47  E-value=0.053  Score=43.16  Aligned_cols=67  Identities=16%  Similarity=0.175  Sum_probs=46.3

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHh----Hh---HHHHHHHHHHHHHHHHHHH-hhcCCch
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYM----LH---WQIVCYFCAATACISFIIV-TFMPETP   70 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~----~~---Wr~~~~~~~~~~~l~~~~~-~~~pESp   70 (164)
                      +++..+++++.||+.+|.+.++.. .-++|..+...++-.    .+   ||....+-.++..+..+.. +.+-|.|
T Consensus       123 av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p  197 (417)
T COG2223         123 AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVP  197 (417)
T ss_pred             hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence            566778999999999999999888 666666555555443    36   8888777777666554444 3344433

>TIGR00893 2A0114 d-galactonate transporter

Probab=96.36  E-value=0.013  Score=45.04  Aligned_cols=61  Identities=16%  Similarity=0.051  Sum_probs=49.9

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----h-HHHHHHHHHHHHHHHHHHH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----H-WQIVCYFCAATACISFIIV   63 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~-Wr~~~~~~~~~~~l~~~~~   63 (164)
                      +....++.|..|++.||...++.+....+|..+++.+....    + |+..+.+.++..++..+..
T Consensus       330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       330 AIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             hHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            34567889999999999999999999999999999888776    5 9988887777665554443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=96.34  E-value=0.025  Score=44.30  Aligned_cols=47  Identities=13%  Similarity=-0.166  Sum_probs=35.8

Q ss_pred             hhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHH
Q psy66             7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAAT   55 (164)
Q Consensus         7 ~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~   55 (164)
                      .+..|.  +++|++..+......++|.++++.++..+    +||..+.+..+.
T Consensus       117 al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902       117 ALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG  167 (382)
T ss_pred             HHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            344443  56788888888888889999998877666    999998876654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=96.28  E-value=0.011  Score=47.52  Aligned_cols=57  Identities=9%  Similarity=-0.051  Sum_probs=45.1

Q ss_pred             hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHH
Q psy66             6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIV   63 (164)
Q Consensus         6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~   63 (164)
                      ..++.|+.+ ++|++..++.+.+..+|..+++.++..+    +||+.|++.++..++..+..
T Consensus       130 ~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~  190 (455)
T TIGR00892       130 LTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCG  190 (455)
T ss_pred             HHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            345678875 7899999999999999998888877655    99999999888765544433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=96.24  E-value=0.028  Score=45.11  Aligned_cols=57  Identities=14%  Similarity=0.074  Sum_probs=41.9

Q ss_pred             hhhhhccCchhHHHHHhHHHHHHHHHHH-HHHHHHHhH----hHHHHHHHHHHHHHHHHHHH
Q psy66             7 VYVSEISLPAYRGLFASLGPVFVSLGVL-FVYYAGYML----HWQIVCYFCAATACISFIIV   63 (164)
Q Consensus         7 ~~i~E~~p~~~Rg~~~~~~~~~~~~G~l-l~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~   63 (164)
                      ++..|..|++.||...++.+....+|.. +++.+....    +|+..+.+....+++..+..
T Consensus       370 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~  431 (452)
T PRK11273        370 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL  431 (452)
T ss_pred             HHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            4567999999999999999877777654 466665544    89998887777665554443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=96.23  E-value=0.012  Score=45.11  Aligned_cols=56  Identities=16%  Similarity=-0.043  Sum_probs=47.3

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACIS   59 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~   59 (164)
                      ..+.++.|..|+++||+..++.+....+|..+++.+....    +|+..+.+.++..++.
T Consensus       315 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       315 LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            4466889999999999999999999999999999887766    8999888877665543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=96.20  E-value=0.015  Score=45.65  Aligned_cols=64  Identities=11%  Similarity=-0.045  Sum_probs=48.7

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHHHhhcCC
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFIIVTFMPE   68 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~~~~~~pE   68 (164)
                      .+.++.|..|++.||+..++.+....+|..+++.+...+     +|...+.......++..+..+++.+
T Consensus       329 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (406)
T PRK11551        329 LYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVS  397 (406)
T ss_pred             HHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            456788999999999999999999999999999998776     5666666665555555555544433

>PRK12382 putative transporter; Provisional

Probab=96.14  E-value=0.026  Score=44.18  Aligned_cols=59  Identities=19%  Similarity=0.039  Sum_probs=48.3

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHH
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIV   63 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~   63 (164)
                      ....+.|..|+++||+..++.+....+|..+++.+....    +|+..+.+.++..++..+..
T Consensus       323 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  385 (392)
T PRK12382        323 LGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVT  385 (392)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            345678889999999999999999999999999887766    89999988887766654443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=96.09  E-value=0.0038  Score=50.29  Aligned_cols=57  Identities=9%  Similarity=-0.011  Sum_probs=47.4

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISF   60 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~   60 (164)
                      ..+.++.|..|++++|...++.+....+|.++++.++..+     +|+..+.+.++..++..
T Consensus       353 ~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~  414 (455)
T TIGR00892       353 LLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAG  414 (455)
T ss_pred             HHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHH
Confidence            3456778999999999999999999999999999998766     59988888877655443

>PRK09528 lacY galactoside permease; Reviewed

Probab=95.96  E-value=0.0095  Score=47.23  Aligned_cols=62  Identities=13%  Similarity=0.027  Sum_probs=43.6

Q ss_pred             hhhhhhccCchhHHHHHhH-HHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHH-HHHhhcC
Q psy66             6 YVYVSEISLPAYRGLFASL-GPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISF-IIVTFMP   67 (164)
Q Consensus         6 ~~~i~E~~p~~~Rg~~~~~-~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~-~~~~~~p   67 (164)
                      ..++.|..|++.|+...+. .+....+|..+++.+.+.+    |||..+.+.++..++.. +....++
T Consensus       337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~  404 (420)
T PRK09528        337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLS  404 (420)
T ss_pred             HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhc
Confidence            3567888999999876544 5667778888888887666    89999887766654443 3333443

>KOG3626|consensus

Probab=95.92  E-value=0.13  Score=44.04  Aligned_cols=69  Identities=16%  Similarity=0.237  Sum_probs=52.5

Q ss_pred             CccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----------------------hHHHHHHHHHHHHHH
Q psy66             2 GSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----------------------HWQIVCYFCAATACI   58 (164)
Q Consensus         2 ~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----------------------~Wr~~~~~~~~~~~l   58 (164)
                      .+....|+=|.+-+++-....++......+|..+|.+++..+                       .|..-|++.+...++
T Consensus       255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~  334 (735)
T KOG3626|consen  255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF  334 (735)
T ss_pred             ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence            355677888999999999999999999999999999998766                       566666666666666


Q ss_pred             HHHHHhhcCCch
Q psy66            59 SFIIVTFMPETP   70 (164)
Q Consensus        59 ~~~~~~~~pESp   70 (164)
                      ..+..+++|...
T Consensus       335 ~a~p~f~fPk~l  346 (735)
T KOG3626|consen  335 SAVPLFFFPKEL  346 (735)
T ss_pred             HHHHHHhCcccC
Confidence            555566666653

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=95.92  E-value=0.019  Score=44.98  Aligned_cols=60  Identities=12%  Similarity=-0.013  Sum_probs=39.8

Q ss_pred             hhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy66             8 YVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPET   69 (164)
Q Consensus         8 ~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pES   69 (164)
                      ++.++  .+.|++..+....+.++|..+++.++..+    +||..+++.++..++..+...+.||.
T Consensus       118 ~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  181 (382)
T PRK11128        118 LANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRPTI  181 (382)
T ss_pred             HHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCC
Confidence            44454  34566666667777778888888887766    99999887776544444444456764

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=95.89  E-value=0.04  Score=44.94  Aligned_cols=67  Identities=15%  Similarity=0.242  Sum_probs=49.3

Q ss_pred             chhhhhhccCchhH--HHHHhHHHHHHHHHHHHHHHHHHhH-------------------hHHHHHHHHHHHHHHH-HHH
Q psy66             5 TYVYVSEISLPAYR--GLFASLGPVFVSLGVLFVYYAGYML-------------------HWQIVCYFCAATACIS-FII   62 (164)
Q Consensus         5 ~~~~i~E~~p~~~R--g~~~~~~~~~~~~G~ll~~~~~~~~-------------------~Wr~~~~~~~~~~~l~-~~~   62 (164)
                      ..+++.|.+|++.|  +...+..+.+..+|.++++.++...                   +-|..|.+.++..++. ++.
T Consensus       135 ~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t  214 (477)
T TIGR01301       135 CRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIA  214 (477)
T ss_pred             HHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence            34678999998865  5788888888899999998887653                   3466777777765554 445


Q ss_pred             HhhcCCchH
Q psy66            63 VTFMPETPA   71 (164)
Q Consensus        63 ~~~~pESp~   71 (164)
                      .++.+|.|.
T Consensus       215 ~~~v~E~~~  223 (477)
T TIGR01301       215 LSAVKENPL  223 (477)
T ss_pred             eeeeeccCC
Confidence            567899763

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=95.88  E-value=0.063  Score=42.74  Aligned_cols=63  Identities=19%  Similarity=0.349  Sum_probs=45.5

Q ss_pred             hhhhhhccC-chhHHHHHhHHHHHHHHHHHHHHHHHHhH-----------hHHHHHHHHHHHHHHHHH-HHhhcCC
Q psy66             6 YVYVSEISL-PAYRGLFASLGPVFVSLGVLFVYYAGYML-----------HWQIVCYFCAATACISFI-IVTFMPE   68 (164)
Q Consensus         6 ~~~i~E~~p-~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----------~Wr~~~~~~~~~~~l~~~-~~~~~pE   68 (164)
                      ..+..|+++ +++|.+..+.-+.+..+|.++...+...+           +|++...+.++..++..+ ..+..+|
T Consensus       125 ~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  125 NALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             hhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            346789987 57999999999888888887555554433           599988888777666544 4455677

>TIGR00897 2A0118 polyol permease family

Probab=95.79  E-value=0.092  Score=41.41  Aligned_cols=38  Identities=16%  Similarity=0.050  Sum_probs=31.2

Q ss_pred             hhhhhhccCchhHHHHHhHHHHHHHHHH-HHHHHHHHhH
Q psy66             6 YVYVSEISLPAYRGLFASLGPVFVSLGV-LFVYYAGYML   43 (164)
Q Consensus         6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~-ll~~~~~~~~   43 (164)
                      ..++.|..|+++||+..++.+.+.++|. ++++.++...
T Consensus       127 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l  165 (402)
T TIGR00897       127 LVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYA  165 (402)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4567789999999999999999999996 5777776543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09952 shikimate transporter; Provisional

Probab=95.71  E-value=0.047  Score=43.70  Aligned_cols=66  Identities=23%  Similarity=0.263  Sum_probs=47.4

Q ss_pred             cchhhhhhccCchhHHHHHhHH-HHHHHHHHHHHHHHHHhH------hHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy66             4 STYVYVSEISLPAYRGLFASLG-PVFVSLGVLFVYYAGYML------HWQIVCYFCAATACISFIIVTFMPET   69 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~-~~~~~~G~ll~~~~~~~~------~Wr~~~~~~~~~~~l~~~~~~~~pES   69 (164)
                      ..+.++.|..|++.|+...++. +.+..+|..++|.+...+      +|+..+....+..++..+..+.++|+
T Consensus       363 ~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        363 VQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN  435 (438)
T ss_pred             HHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence            3466889999999998777764 444557777777776655      48888877777777666666666764

>PRK03633 putative MFS family transporter protein; Provisional

Probab=95.70  E-value=0.053  Score=42.40  Aligned_cols=61  Identities=11%  Similarity=0.022  Sum_probs=47.5

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHh
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVT   64 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~   64 (164)
                      ....++.|..|++.++...+.....+.+|.++++.+++.+    +|++.+.+.+...++..+..+
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        305 VAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            3455678889998888888888888999999999988877    788888887777665554443

>TIGR00899 2A0120 sugar efflux transporter

Probab=95.68  E-value=0.046  Score=42.16  Aligned_cols=63  Identities=13%  Similarity=0.247  Sum_probs=48.6

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCC
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPE   68 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pE   68 (164)
                      ...++.|..|.+ |+...++.+....+|..+++.++...    +|+..+.+.++..++..+...+++|
T Consensus       309 ~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       309 GMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence            445678888765 56888888888889999998887766    8999998888877776666655544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=95.66  E-value=0.042  Score=43.45  Aligned_cols=65  Identities=11%  Similarity=-0.076  Sum_probs=47.8

Q ss_pred             hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHH-HHHHHhhcCCch
Q psy66             6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACI-SFIIVTFMPETP   70 (164)
Q Consensus         6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l-~~~~~~~~pESp   70 (164)
                      ..++.|..|++.||+..++......+|..+++.+...+    +.+..+...+...++ ..+....+||.+
T Consensus       334 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (417)
T PRK10489        334 YTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELR  403 (417)
T ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence            45788999999999999999998999999999888777    666666655544333 344445556643

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=95.65  E-value=0.055  Score=42.64  Aligned_cols=57  Identities=12%  Similarity=-0.023  Sum_probs=41.3

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISF   60 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~   60 (164)
                      +..+.++.|+.| ++|+++.+....+...|..+++.++...     +||..+.+..++.++.+
T Consensus       116 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~  177 (393)
T PRK09705        116 AVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVAL  177 (393)
T ss_pred             hhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            345667788886 7899999998888777777777766543     79998766555544443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=95.63  E-value=0.039  Score=44.85  Aligned_cols=57  Identities=11%  Similarity=0.048  Sum_probs=45.2

Q ss_pred             ccchhhhhhccCchh---HHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHH
Q psy66             3 SSTYVYVSEISLPAY---RGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACIS   59 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~---Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~   59 (164)
                      +....+++|..|++.   |+...++.+...++|.++++.++..+    +||+.|.+.++..++.
T Consensus       121 ~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~  184 (475)
T TIGR00924       121 ANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIG  184 (475)
T ss_pred             CCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            455678889988754   88888999999999999999988776    8999998877544433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=95.56  E-value=0.063  Score=43.96  Aligned_cols=56  Identities=13%  Similarity=0.098  Sum_probs=42.4

Q ss_pred             ccchhhhhhccCchh--HHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHH
Q psy66             3 SSTYVYVSEISLPAY--RGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACI   58 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~--Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l   58 (164)
                      +....++.|+.|++.  |+...++.+.+.++|..+++.++.++    +||+.|.+..+..++
T Consensus       131 ~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i  192 (500)
T PRK09584        131 ANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI  192 (500)
T ss_pred             CCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence            344578899987643  44566778889999999999888777    899999987764433

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.51  E-value=0.0036  Score=51.70  Aligned_cols=42  Identities=12%  Similarity=0.125  Sum_probs=0.0

Q ss_pred             CccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66             2 GSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML   43 (164)
Q Consensus         2 ~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~   43 (164)
                      .+....|+=|.++++.-+...++......+|..+|.+++...
T Consensus       159 ~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~  200 (539)
T PF03137_consen  159 YTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFC  200 (539)
T ss_dssp             ------------------------------------------
T ss_pred             ccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHH
Confidence            456678999999999999999999999999999998888654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG0569|consensus

Probab=95.46  E-value=0.17  Score=41.45  Aligned_cols=68  Identities=21%  Similarity=0.194  Sum_probs=47.8

Q ss_pred             CccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH--hHH-HHHHHHHHHHHHHHH-HHhhcCCc
Q psy66             2 GSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML--HWQ-IVCYFCAATACISFI-IVTFMPET   69 (164)
Q Consensus         2 ~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~--~Wr-~~~~~~~~~~~l~~~-~~~~~pES   69 (164)
                      .++.+.+.+|++|++.|..+.+.......++.++....-..+  .|- ..++.-.+|.++..+ ++.++|||
T Consensus       386 gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPET  457 (485)
T KOG0569|consen  386 GPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPET  457 (485)
T ss_pred             CchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCccc
Confidence            455667889999999999999988888777776665554444  222 555555666555544 45679998

>TIGR00788 fbt folate/biopterin transporter

Probab=95.40  E-value=0.072  Score=43.25  Aligned_cols=65  Identities=11%  Similarity=0.162  Sum_probs=48.0

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----------hHHH-HHHHHHHHHHHHHHHHhhcCC
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----------HWQI-VCYFCAATACISFIIVTFMPE   68 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----------~Wr~-~~~~~~~~~~l~~~~~~~~pE   68 (164)
                      ...+++.+.+|++.+|...++.+...++|.++++.++..+           +.++ ...++.++.++.+++.+.+|+
T Consensus       371 ~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~  447 (468)
T TIGR00788       371 PFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR  447 (468)
T ss_pred             cHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3467889999999999999999999999999999887766           2223 223344445555555667887

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK03893 putative sialic acid transporter; Provisional

Probab=95.33  E-value=0.01  Score=47.92  Aligned_cols=50  Identities=8%  Similarity=-0.121  Sum_probs=41.6

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCA   53 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~   53 (164)
                      ..+.++.|..|++.||...++.+....+|..+++.++..+    +|+..+....
T Consensus       386 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~  439 (496)
T PRK03893        386 LLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLS  439 (496)
T ss_pred             hhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence            4566889999999999999999999999999999988776    7887665444

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=95.27  E-value=0.077  Score=43.12  Aligned_cols=58  Identities=10%  Similarity=-0.050  Sum_probs=46.5

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISF   60 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~   60 (164)
                      +....++.|.+|++.||++.++..+...+|..+++.++...    +|...+...++..++..
T Consensus       400 p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (475)
T TIGR00924       400 PLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVG  461 (475)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHH
Confidence            45667889999999999999999999999999998887655    67777766665544443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=95.26  E-value=0.06  Score=44.14  Aligned_cols=53  Identities=17%  Similarity=0.072  Sum_probs=43.9

Q ss_pred             cchhhhhhccCch--hHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHH
Q psy66             4 STYVYVSEISLPA--YRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATA   56 (164)
Q Consensus         4 ~~~~~i~E~~p~~--~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~   56 (164)
                      ..+.+++|..|++  +|+...++.....++|..+++.+...+    +||+.|.++++..
T Consensus       120 ~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm  178 (493)
T PRK15462        120 NVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGM  178 (493)
T ss_pred             cHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence            4467899999875  788888888888889999999998777    8999998876543

>PRK10133 L-fucose transporter; Provisional

Probab=95.20  E-value=0.14  Score=41.22  Aligned_cols=38  Identities=16%  Similarity=0.263  Sum_probs=30.6

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAG   40 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~   40 (164)
                      +....++.|+.|+++|+...+..+.++.+|..+++.++
T Consensus       136 ~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g  173 (438)
T PRK10133        136 TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG  173 (438)
T ss_pred             hhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566788888888887788889999999998888774

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=95.18  E-value=0.51  Score=38.48  Aligned_cols=33  Identities=21%  Similarity=0.105  Sum_probs=24.5

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFV   36 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~   36 (164)
                      .....++++.|+++||++.++.....++|..++
T Consensus       147 ~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~  179 (462)
T PRK15034        147 SSMGNISFFFPKAKQGSALGINGGLGNLGVSVM  179 (462)
T ss_pred             HHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHH
Confidence            455678999999999999999865555555433

>PRK11663 regulatory protein UhpC; Provisional

Probab=95.02  E-value=0.076  Score=42.41  Aligned_cols=57  Identities=21%  Similarity=0.248  Sum_probs=46.9

Q ss_pred             hhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHH
Q psy66             7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIV   63 (164)
Q Consensus         7 ~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~   63 (164)
                      .++.|..|++.||...++.+....+|..++|.+...+    +|+..+.+.++..++..+..
T Consensus       360 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~  420 (434)
T PRK11663        360 MAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLL  420 (434)
T ss_pred             HHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            4568999999999999999999999999998887766    89998887777765554433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=94.99  E-value=0.17  Score=40.23  Aligned_cols=51  Identities=8%  Similarity=0.045  Sum_probs=40.2

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHH
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAAT   55 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~   55 (164)
                      ...++.|.+|+++|++..++.-++..+|.+++.++....     .=|....+..+.
T Consensus       110 ~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a  165 (403)
T PF03209_consen  110 FLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVA  165 (403)
T ss_pred             HHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHH
Confidence            345789999999999999999999999999999988766     334444444443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=94.88  E-value=0.036  Score=43.41  Aligned_cols=58  Identities=14%  Similarity=0.089  Sum_probs=47.8

Q ss_pred             hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHH
Q psy66             6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIV   63 (164)
Q Consensus         6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~   63 (164)
                      ..++.+..|+++||+..+..+....+|..+++.++..+    +|+..+.+.++..++..+..
T Consensus       333 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  394 (408)
T PRK09874        333 QTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYS  394 (408)
T ss_pred             HHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence            44567888999999999999999999999999998766    89999998887766655444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=94.88  E-value=0.65  Score=36.27  Aligned_cols=37  Identities=11%  Similarity=-0.039  Sum_probs=32.6

Q ss_pred             hhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66             7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML   43 (164)
Q Consensus         7 ~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~   43 (164)
                      ..+.+..++++|++..+..+.+..+|..+++.++...
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  153 (381)
T PRK03633        117 SALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKV  153 (381)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4567888999999999999999999999999988766

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=94.74  E-value=0.21  Score=39.25  Aligned_cols=48  Identities=23%  Similarity=0.348  Sum_probs=30.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhh-cCCch
Q psy66            23 SLGPVFVSLGVLFVYYAGYML---HWQIVCYFCAATACISFIIVTF-MPETP   70 (164)
Q Consensus        23 ~~~~~~~~~G~ll~~~~~~~~---~Wr~~~~~~~~~~~l~~~~~~~-~pESp   70 (164)
                      +......++|..+++.++...   +||..|.+.++..++..+..+. .||+|
T Consensus       136 g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  187 (396)
T TIGR00882       136 GKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAKPKAP  187 (396)
T ss_pred             chhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            344444556666666665544   9999999888776665544443 45543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=94.54  E-value=0.61  Score=37.26  Aligned_cols=42  Identities=21%  Similarity=0.312  Sum_probs=37.4

Q ss_pred             CccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66             2 GSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML   43 (164)
Q Consensus         2 ~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~   43 (164)
                      .+++..|+..+.+++.-...+++.|.+.++|.+++|+++..+
T Consensus       122 etaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~l  163 (422)
T COG0738         122 ETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSL  163 (422)
T ss_pred             HhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            467788999999998888899999999999999999998765

>PRK12307 putative sialic acid transporter; Provisional

Probab=94.47  E-value=0.15  Score=40.20  Aligned_cols=40  Identities=18%  Similarity=0.013  Sum_probs=34.6

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML   43 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~   43 (164)
                      ..+.++.|..|++.||+..++......+|..+++.+...+
T Consensus       341 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l  380 (426)
T PRK12307        341 LVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL  380 (426)
T ss_pred             HHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence            3466789999999999999998888888999998887766

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=94.45  E-value=0.19  Score=40.04  Aligned_cols=60  Identities=22%  Similarity=0.320  Sum_probs=45.2

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHH-HHHHHHHHHHHHHHhH----------hHHHHHHHHHHHHHHHHHH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPV-FVSLGVLFVYYAGYML----------HWQIVCYFCAATACISFII   62 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~-~~~~G~ll~~~~~~~~----------~Wr~~~~~~~~~~~l~~~~   62 (164)
                      +++..|+.|.+|++.|+...+++.. ..++|..++..+++.+          +|..++.+.++..++..+.
T Consensus       320 ~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~  390 (400)
T PF03825_consen  320 AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVL  390 (400)
T ss_pred             HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence            3456789999999999999997765 4678999999888877          5666776666665444433

>TIGR00788 fbt folate/biopterin transporter

Probab=94.45  E-value=0.046  Score=44.37  Aligned_cols=66  Identities=18%  Similarity=0.029  Sum_probs=45.4

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHH---HHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFV---SLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPETP   70 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~---~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pESp   70 (164)
                      .+-.+..|..+ +.++...+.....|   .+|.++++.+++.+    +||..+.+.++..++..+...++||.+
T Consensus       140 ~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~  212 (468)
T TIGR00788       140 LVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERR  212 (468)
T ss_pred             hHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhccccc
Confidence            34557788888 55544433443333   47888888887766    899999888877666666667788863

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11010 ampG muropeptide transporter; Validated

Probab=94.22  E-value=0.16  Score=41.53  Aligned_cols=65  Identities=12%  Similarity=0.206  Sum_probs=51.1

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPET   69 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pES   69 (164)
                      ...+..+.++++.++...++.+....+|.++++.+++.+    ||+..|.+..+.+++.++...+++++
T Consensus       337 ~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        337 FVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            355678999999999999999998999987776666555    89999988888877776666555554

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=94.09  E-value=0.31  Score=39.33  Aligned_cols=56  Identities=16%  Similarity=0.075  Sum_probs=38.5

Q ss_pred             hhhhhccCchhHHHHHhHHHHHHHH-HHHHHHHHHHhH----------------hHHHHHHHHHHHHHHHHHH
Q psy66             7 VYVSEISLPAYRGLFASLGPVFVSL-GVLFVYYAGYML----------------HWQIVCYFCAATACISFII   62 (164)
Q Consensus         7 ~~i~E~~p~~~Rg~~~~~~~~~~~~-G~ll~~~~~~~~----------------~Wr~~~~~~~~~~~l~~~~   62 (164)
                      .+..|..|++.||.+.++.+....+ |..+++.+.+.+                +|+..+.+..+..++..+.
T Consensus       372 ~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~  444 (467)
T PRK09556        372 VAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICL  444 (467)
T ss_pred             HHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHH
Confidence            4567999999999999999877665 645554444333                4888887765555544333

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=94.08  E-value=0.14  Score=40.58  Aligned_cols=40  Identities=18%  Similarity=0.234  Sum_probs=35.7

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML   43 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~   43 (164)
                      ....++.|.+|++.||+..++.+....+|..+++.++...
T Consensus       317 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l  356 (400)
T PRK11646        317 ARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWL  356 (400)
T ss_pred             cHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHH
Confidence            4456788999999999999999999999999999988877

>PRK09528 lacY galactoside permease; Reviewed

Probab=93.61  E-value=0.43  Score=37.79  Aligned_cols=51  Identities=20%  Similarity=0.259  Sum_probs=34.9

Q ss_pred             hhHHHHHhHHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhhc
Q psy66            16 AYRGLFASLGPVFVSLGVLFVYYAGYML---HWQIVCYFCAATACISFIIVTFM   66 (164)
Q Consensus        16 ~~Rg~~~~~~~~~~~~G~ll~~~~~~~~---~Wr~~~~~~~~~~~l~~~~~~~~   66 (164)
                      +.||...+.......+|..+++.++..+   +|+..+++.++..++..+..+++
T Consensus       137 ~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~  190 (420)
T PRK09528        137 RRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFA  190 (420)
T ss_pred             hhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcc
Confidence            3455555566666677777777776655   89999998888776665555443

>TIGR00897 2A0118 polyol permease family

Probab=93.58  E-value=0.42  Score=37.66  Aligned_cols=58  Identities=16%  Similarity=0.190  Sum_probs=45.4

Q ss_pred             hhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhc
Q psy66             8 YVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFM   66 (164)
Q Consensus         8 ~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~   66 (164)
                      .+.|.. +++||...++.+....+|..++|.++..+    +|+..+++.++..++......|+
T Consensus       339 ~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       339 VFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            445654 56899999999999999999999888766    88888888887776665555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=93.36  E-value=0.21  Score=39.83  Aligned_cols=62  Identities=15%  Similarity=0.200  Sum_probs=38.2

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHH--HHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcC
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSL--GVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMP   67 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~--G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~p   67 (164)
                      .+.++.|+.|++.|+...++.+.....  |.. .+.+....    .|...++...+..++..+..++++
T Consensus       357 ~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~-~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~  424 (432)
T PRK10406        357 SGILKAEMFPAQVRALGVGLSYAVANALFGGS-AEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLH  424 (432)
T ss_pred             HHHHHHHHCCCCccchhhhHHHHHHHHHHHhH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence            356788999999999999987644332  333 55544444    355555555555555555544443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=93.32  E-value=0.33  Score=39.78  Aligned_cols=39  Identities=10%  Similarity=0.043  Sum_probs=32.8

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGY   41 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~   41 (164)
                      ++...++.+.+|++.||+.++++.+...+|..++..+..
T Consensus       401 p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        401 GLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456678899999999999999999888888888777663

>PRK11462 putative transporter; Provisional

Probab=93.26  E-value=1.1  Score=36.30  Aligned_cols=62  Identities=16%  Similarity=0.024  Sum_probs=42.2

Q ss_pred             hhhhhccC-chhHHHHHhHHHHHHHHHHHHHHHHHHhH-----------hHHHHHHHHHHHHHHHHHH-HhhcCC
Q psy66             7 VYVSEISL-PAYRGLFASLGPVFVSLGVLFVYYAGYML-----------HWQIVCYFCAATACISFII-VTFMPE   68 (164)
Q Consensus         7 ~~i~E~~p-~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----------~Wr~~~~~~~~~~~l~~~~-~~~~pE   68 (164)
                      .+..|+++ +++|.+..+.-..+..+|.++++.+....           +|+....+.+++.++.... ....+|
T Consensus       132 al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE  206 (460)
T PRK11462        132 ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKE  206 (460)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhccee
Confidence            35678885 99999999999988888887776664332           5777666666665444433 333455

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=93.21  E-value=0.38  Score=38.55  Aligned_cols=70  Identities=16%  Similarity=0.237  Sum_probs=52.2

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH------hHHHHHHHHHHHHHHHHHHHhhcCCchHHHH
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML------HWQIVCYFCAATACISFIIVTFMPETPAWYA   74 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~------~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~   74 (164)
                      -+.|+.-..|+++-.++.+..-....+|.+++.+++-.+      +.+.+..+......+.++..+++|-.++=+.
T Consensus       114 y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~  189 (412)
T PF01770_consen  114 YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLF  189 (412)
T ss_pred             HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccc
Confidence            346777788999999999888888888888888777655      6777777777666666677777887665443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK09669 putative symporter YagG; Provisional

Probab=93.18  E-value=0.83  Score=36.55  Aligned_cols=62  Identities=16%  Similarity=0.115  Sum_probs=39.4

Q ss_pred             hhhhhcc-CchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----------hHHHHHHHHHHHHHHHHHH-HhhcCC
Q psy66             7 VYVSEIS-LPAYRGLFASLGPVFVSLGVLFVYYAGYML-----------HWQIVCYFCAATACISFII-VTFMPE   68 (164)
Q Consensus         7 ~~i~E~~-p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----------~Wr~~~~~~~~~~~l~~~~-~~~~pE   68 (164)
                      .+..|++ ++++|++..+.-..+..+|..+++.+...+           +|+....+.++...+..+. .+..+|
T Consensus       132 al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e  206 (444)
T PRK09669        132 AMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKE  206 (444)
T ss_pred             HhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEE
Confidence            3567887 668899888877777777766665543221           6887777666665444433 333444

>TIGR00891 2A0112 putative sialic acid transporter

Probab=93.06  E-value=0.15  Score=39.61  Aligned_cols=48  Identities=13%  Similarity=-0.045  Sum_probs=39.5

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----h-HHHHHHH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----H-WQIVCYF   51 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~-Wr~~~~~   51 (164)
                      ..+.++.|..|++.||+..++.+....+|..+++.+...+    + |+..+..
T Consensus       348 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       348 ILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             hHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            4567889999999999999999999999999999988777    4 6554443

>PRK03545 putative arabinose transporter; Provisional

Probab=93.05  E-value=0.55  Score=36.77  Aligned_cols=57  Identities=16%  Similarity=0.086  Sum_probs=44.4

Q ss_pred             hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHH
Q psy66             6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIV   63 (164)
Q Consensus         6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~   63 (164)
                      ..++.|..| +.||+..++......+|..+++.++...    +++..+.+..+..++..+..
T Consensus       316 ~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~  376 (390)
T PRK03545        316 QVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWS  376 (390)
T ss_pred             HHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence            445667766 6889988988888888888888887776    89999988887776665554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=92.92  E-value=0.13  Score=41.18  Aligned_cols=63  Identities=13%  Similarity=0.097  Sum_probs=43.9

Q ss_pred             hhhhccCchhHHHHHhHHHHHHHHH-HHHHHHHHHhH----hHHHHHHHHHHHHHHH-HHHHhhcCCch
Q psy66             8 YVSEISLPAYRGLFASLGPVFVSLG-VLFVYYAGYML----HWQIVCYFCAATACIS-FIIVTFMPETP   70 (164)
Q Consensus         8 ~i~E~~p~~~Rg~~~~~~~~~~~~G-~ll~~~~~~~~----~Wr~~~~~~~~~~~l~-~~~~~~~pESp   70 (164)
                      ...|..|++.||...++.+.....| .++++.+...+    +|...+.+.....++. ......+||..
T Consensus       369 ~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       369 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             HHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4679999999999999988766655 56777776555    7888777666554444 33445567753

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=92.73  E-value=0.31  Score=38.30  Aligned_cols=60  Identities=13%  Similarity=0.049  Sum_probs=43.8

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHHHh
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML--HWQIVCYFCAATACISFIIVT   64 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~--~Wr~~~~~~~~~~~l~~~~~~   64 (164)
                      ...+..|..|++.||+..++.+....+|...++.+....  +-+..|.+.+++.++..+...
T Consensus       301 ~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       301 IMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             HHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999999998888887777766544  555556655666555544443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG2816|consensus

Probab=92.46  E-value=0.59  Score=38.14  Aligned_cols=68  Identities=25%  Similarity=0.303  Sum_probs=54.7

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHH-HhhcCCch
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFII-VTFMPETP   70 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~-~~~~pESp   70 (164)
                      +.+..|+++++..+.|....++....+..|..+++.++...    +--..+.+..+..++..++ ..++|||-
T Consensus       131 s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl  203 (463)
T KOG2816|consen  131 SVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESL  203 (463)
T ss_pred             hhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccccc
Confidence            45677899999999999999999999999999999988877    5556777777776666554 46689973

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=92.31  E-value=0.58  Score=36.62  Aligned_cols=54  Identities=11%  Similarity=-0.044  Sum_probs=42.7

Q ss_pred             hhhhccCc-hhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH
Q psy66             8 YVSEISLP-AYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI   61 (164)
Q Consensus         8 ~i~E~~p~-~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~   61 (164)
                      ++.+.+++ +.+|...++.+....+|..+++.+++..    +|+..+.+.++..++..+
T Consensus       327 ~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       327 AFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            44566665 8999999999999999999999998877    788888877766555433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=92.26  E-value=0.012  Score=46.92  Aligned_cols=67  Identities=18%  Similarity=0.294  Sum_probs=45.3

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----h-HHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----H-WQIVCYFCAATACISFIIVTFMPETP   70 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~-Wr~~~~~~~~~~~l~~~~~~~~pESp   70 (164)
                      ...++..|..|.+.|+...++......+|.++++.+....    + +-.......+..+...+...++|||.
T Consensus       369 ~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~  440 (451)
T PF00083_consen  369 LPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETK  440 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCC
Confidence            3447789999999999999988877777777776665444    2 33344444444444445567899983

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3764|consensus

Probab=92.24  E-value=0.091  Score=41.92  Aligned_cols=63  Identities=19%  Similarity=0.145  Sum_probs=53.5

Q ss_pred             cchhhhhhccCchh-HHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhc
Q psy66             4 STYVYVSEISLPAY-RGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFM   66 (164)
Q Consensus         4 ~~~~~i~E~~p~~~-Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~   66 (164)
                      +...++++..|.+. ||.+++..-.+.++|.+++|.+++.+    |.+..|++.++..++-..+.+++
T Consensus       179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence            44556777776665 79999999999999999999999887    99999999999888887777665

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=91.94  E-value=0.84  Score=37.85  Aligned_cols=52  Identities=13%  Similarity=-0.072  Sum_probs=40.4

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHH
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATA   56 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~   56 (164)
                      ..+.+.+.+|++.||+..+++++....|..++.++.+.+    +-+..+.++++..
T Consensus       328 ~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~l  383 (524)
T PF05977_consen  328 LNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAAL  383 (524)
T ss_pred             HHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            345678999999999999999988888888888877766    6666666555543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=91.74  E-value=1.8  Score=35.44  Aligned_cols=57  Identities=26%  Similarity=0.206  Sum_probs=42.4

Q ss_pred             hhhhcc-CchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----------hHHHHHHHHHHHHHHHHHHHh
Q psy66             8 YVSEIS-LPAYRGLFASLGPVFVSLGVLFVYYAGYML-----------HWQIVCYFCAATACISFIIVT   64 (164)
Q Consensus         8 ~i~E~~-p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----------~Wr~~~~~~~~~~~l~~~~~~   64 (164)
                      +..|++ .+++|.+..+.-+.+..+|.++...+...+           +|+..-.+-++.+++.++.++
T Consensus       136 l~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~  204 (467)
T COG2211         136 LGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCF  204 (467)
T ss_pred             cchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            456775 789999999999999999987777666544           788777777776666655443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=91.56  E-value=0.15  Score=39.24  Aligned_cols=52  Identities=23%  Similarity=0.171  Sum_probs=38.5

Q ss_pred             cchhhhhhccCchhHHHHHhH-HHHHHHHHHHHHHHHHHhH----h-HHHHHHHHHHH
Q psy66             4 STYVYVSEISLPAYRGLFASL-GPVFVSLGVLFVYYAGYML----H-WQIVCYFCAAT   55 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~-~~~~~~~G~ll~~~~~~~~----~-Wr~~~~~~~~~   55 (164)
                      ....++.|..|++.|++..++ .+....+|..++|.++..+    + |+...+...+.
T Consensus       332 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~  389 (394)
T TIGR00883       332 PMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL  389 (394)
T ss_pred             hHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence            456678999999999998886 4566677887888877665    4 88776655544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=91.20  E-value=1.2  Score=35.16  Aligned_cols=63  Identities=16%  Similarity=0.098  Sum_probs=46.0

Q ss_pred             hhhhcc-CchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHH-HHHHhhcCCch
Q psy66             8 YVSEIS-LPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACIS-FIIVTFMPETP   70 (164)
Q Consensus         8 ~i~E~~-p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~-~~~~~~~pESp   70 (164)
                      ...+.. |++.||+..++.+....+|..+++.+..++     +|...+.+..+..++. .+...+.||++
T Consensus       316 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (393)
T PRK09705        316 LALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF  385 (393)
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence            445555 568899999998888888888888887777     5778777776665444 34456778875

>PRK10504 putative transporter; Provisional

Probab=91.19  E-value=0.75  Score=36.95  Aligned_cols=39  Identities=10%  Similarity=-0.101  Sum_probs=33.0

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML   43 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~   43 (164)
                      ...++.+..|++.||...++.+....+|..+++.++...
T Consensus       374 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l  412 (471)
T PRK10504        374 MNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL  412 (471)
T ss_pred             HHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667899999999999999999999998888887665

>KOG0255|consensus

Probab=91.10  E-value=1.1  Score=36.60  Aligned_cols=67  Identities=15%  Similarity=0.261  Sum_probs=49.5

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH--hHHHHHH--HHHHHHHHHHHHHhhcCCchH
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML--HWQIVCY--FCAATACISFIIVTFMPETPA   71 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~--~Wr~~~~--~~~~~~~l~~~~~~~~pESp~   71 (164)
                      ...+..|..|...|+...+.......+|.++++.+....  .+..+..  .+.+..+..++...++||+..
T Consensus       427 ~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~  497 (521)
T KOG0255|consen  427 IFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKG  497 (521)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCC
Confidence            366789999999999999999999999999999998766  2222222  233444444555588999853

>KOG0252|consensus

Probab=90.80  E-value=0.26  Score=40.11  Aligned_cols=68  Identities=16%  Similarity=0.197  Sum_probs=53.3

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH---------hHHHHHHHHHHHHHHHHHHHhhcCCchH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML---------HWQIVCYFCAATACISFIIVTFMPETPA   71 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~---------~Wr~~~~~~~~~~~l~~~~~~~~pESp~   71 (164)
                      +..++-+|++|.+.||..-++.....=.|.+++...-.+.         +-|..+++.....++-.+..+++|||.+
T Consensus       426 ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~  502 (538)
T KOG0252|consen  426 TTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG  502 (538)
T ss_pred             eeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence            3455678999999999999888888888888777665444         6778888877777777777788999853

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=90.50  E-value=1.1  Score=36.18  Aligned_cols=65  Identities=15%  Similarity=0.279  Sum_probs=47.8

Q ss_pred             hhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH------------hHHHHHHHHHHHHHHHHHHHhhcCCchH
Q psy66             7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML------------HWQIVCYFCAATACISFIIVTFMPETPA   71 (164)
Q Consensus         7 ~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~------------~Wr~~~~~~~~~~~l~~~~~~~~pESp~   71 (164)
                      +.++|++|+..-|..-++.....++|..++..++..+            +--+..+++.+..++.+++..++|+..+
T Consensus       341 vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~~  417 (433)
T PF03092_consen  341 VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQKR  417 (433)
T ss_pred             HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence            4689999999999999999988899888888887766            1223444455555666666777888654

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=89.84  E-value=1  Score=35.48  Aligned_cols=55  Identities=15%  Similarity=0.164  Sum_probs=33.2

Q ss_pred             hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHh
Q psy66             6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVT   64 (164)
Q Consensus         6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~   64 (164)
                      ..++.+..|.+.++...+.    .++|.++++.++..+    ||+.++.+.++.+++.++..+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        329 MALCNRSFSATQYALLSAL----ASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             HHhcCCCCcHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            3456666676666543333    344444333344433    999999998888777655553

>PRK10429 melibiose:sodium symporter; Provisional

Probab=89.66  E-value=4  Score=33.04  Aligned_cols=63  Identities=16%  Similarity=0.079  Sum_probs=38.6

Q ss_pred             hhhhhcc-CchhHHHHHhHHHHHHHHHHHHHHHHHHh----H-------hHHHHHHHHHHHHHHHH-HHHhhcCCc
Q psy66             7 VYVSEIS-LPAYRGLFASLGPVFVSLGVLFVYYAGYM----L-------HWQIVCYFCAATACISF-IIVTFMPET   69 (164)
Q Consensus         7 ~~i~E~~-p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~----~-------~Wr~~~~~~~~~~~l~~-~~~~~~pES   69 (164)
                      .++.|++ ++++|.+..+.-..+..+|.++.+.+...    .       +|+....+.++..++.. +..+..+|-
T Consensus       129 al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        129 SLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             hhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence            4568998 69999998887666666665444433321    1       57776666666544433 333446664

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=89.19  E-value=0.62  Score=35.03  Aligned_cols=49  Identities=14%  Similarity=0.292  Sum_probs=34.3

Q ss_pred             hhHHHHHhHHHHHHHHHHHHHHHHHHhH---------hHHHHHHHHHHHHHHHHHHHh
Q psy66            16 AYRGLFASLGPVFVSLGVLFVYYAGYML---------HWQIVCYFCAATACISFIIVT   64 (164)
Q Consensus        16 ~~Rg~~~~~~~~~~~~G~ll~~~~~~~~---------~Wr~~~~~~~~~~~l~~~~~~   64 (164)
                      |.|+..+.....++++|.++....-...         +|++++.+.++..++.++...
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~   59 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYI   59 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677777778888888887665442111         999999888877666655553

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=89.14  E-value=1.2  Score=39.85  Aligned_cols=67  Identities=10%  Similarity=0.134  Sum_probs=44.1

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHH-HHHHhhcCCch
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACIS-FIIVTFMPETP   70 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~-~~~~~~~pESp   70 (164)
                      ....++.|.+|++.||+..++.++...+|.++++.++...     ++...+.+.+...++. ......+||+.
T Consensus       342 ~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (1146)
T PRK08633        342 PLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLPDSL  414 (1146)
T ss_pred             HHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            3456788999999999999999988888887777666554     4444555444433322 22333456553

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=88.94  E-value=3.2  Score=32.79  Aligned_cols=38  Identities=16%  Similarity=0.175  Sum_probs=29.3

Q ss_pred             hhhhhhccC-------chhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66             6 YVYVSEISL-------PAYRGLFASLGPVFVSLGVLFVYYAGYML   43 (164)
Q Consensus         6 ~~~i~E~~p-------~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~   43 (164)
                      +.++.|..+       ++.+|...++.+....+|..+++.+...+
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l  377 (437)
T TIGR00792       333 WALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI  377 (437)
T ss_pred             HHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667654       56789999999999999988888876655

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=87.63  E-value=8.1  Score=31.72  Aligned_cols=66  Identities=20%  Similarity=0.378  Sum_probs=47.4

Q ss_pred             hhhhhhccCchhH--------------------------HHHHhHHHHHHHHHHHHHHHHHHhH-----h-------HHH
Q psy66             6 YVYVSEISLPAYR--------------------------GLFASLGPVFVSLGVLFVYYAGYML-----H-------WQI   47 (164)
Q Consensus         6 ~~~i~E~~p~~~R--------------------------g~~~~~~~~~~~~G~ll~~~~~~~~-----~-------Wr~   47 (164)
                      ..|+-|+++++.+                          ++..+.......+|.++.-++....     +       -|+
T Consensus       148 na~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~  227 (477)
T PF11700_consen  148 NAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRV  227 (477)
T ss_pred             HHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhH
Confidence            3467788888888                          8888887777778887777776655     2       366


Q ss_pred             HHHHHHHH-HHHHHHHHhhcCCchH
Q psy66            48 VCYFCAAT-ACISFIIVTFMPETPA   71 (164)
Q Consensus        48 ~~~~~~~~-~~l~~~~~~~~pESp~   71 (164)
                      .+.+.++- .++.++..+++||-|+
T Consensus       228 ~~~~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  228 AFLIVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            66665554 5566777888898875

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10054 putative transporter; Provisional

Probab=86.40  E-value=2.4  Score=33.46  Aligned_cols=65  Identities=14%  Similarity=0.188  Sum_probs=40.6

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH-HHhhcCCch
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI-IVTFMPETP   70 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp   70 (164)
                      ...++.+.+|++.||...+..+ ...+|..+++.+++.+    +-...+.+..+...+.++ ...-+.|.|
T Consensus       319 ~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (395)
T PRK10054        319 EYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRARP  388 (395)
T ss_pred             HHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence            3456789999999998877554 4457888888888777    445555554444333333 333344433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=86.39  E-value=4.3  Score=31.71  Aligned_cols=54  Identities=9%  Similarity=-0.030  Sum_probs=37.4

Q ss_pred             cchhhhhhccCchhHHHHHhHHH-HHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHH
Q psy66             4 STYVYVSEISLPAYRGLFASLGP-VFVSLGVLFVYYAGYML----HWQIVCYFCAATACIS   59 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~-~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~   59 (164)
                      ....|+.+. |++.|+...++++ ....+|..+++.+++.+    ++. .+.+.++.+++.
T Consensus       313 ~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~-~~~~~~~~~~~~  371 (382)
T TIGR00902       313 AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAG-TFVFMAIIAAAA  371 (382)
T ss_pred             HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHH
Confidence            345678887 9999998888875 56788888888888877    553 344444443333

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=86.35  E-value=3.8  Score=34.03  Aligned_cols=57  Identities=12%  Similarity=0.009  Sum_probs=45.3

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISF   60 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~   60 (164)
                      +-..++.|+.|+++-..+.++.+...++..+++|.+++.+    |=.+.|++.++..++..
T Consensus       123 A~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i  183 (524)
T PF05977_consen  123 AWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISI  183 (524)
T ss_pred             HHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456788999999999999999999999999999988876    66667777666544433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=86.31  E-value=0.77  Score=36.46  Aligned_cols=49  Identities=12%  Similarity=0.037  Sum_probs=39.2

Q ss_pred             hhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHH
Q psy66             7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAAT   55 (164)
Q Consensus         7 ~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~   55 (164)
                      +...|..|++.|+...++.+....+|..+++.+....     +|+..+.+..+.
T Consensus       356 ~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       356 TTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             hhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            3446788999999999999999999999998876554     588877666554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG0254|consensus

Probab=86.29  E-value=5.3  Score=32.76  Aligned_cols=67  Identities=22%  Similarity=0.157  Sum_probs=38.5

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHH-HHhHhH---HHHHH-HHHHHHHHHH-HHHhhcCCc
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYA-GYMLHW---QIVCY-FCAATACISF-IIVTFMPET   69 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~-~~~~~W---r~~~~-~~~~~~~l~~-~~~~~~pES   69 (164)
                      ++..++.+|+.|.+.|+...++......+...+.... .....+   ...+. ..++..+... ....++||+
T Consensus       414 ~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pET  486 (513)
T KOG0254|consen  414 PVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPET  486 (513)
T ss_pred             cchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccC
Confidence            3445688999999999999886665544444333222 222222   33333 3333333334 456678997

>KOG3810|consensus

Probab=86.09  E-value=3.4  Score=32.78  Aligned_cols=72  Identities=14%  Similarity=0.194  Sum_probs=52.6

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH------hHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhc
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML------HWQIVCYFCAATACISFIIVTFMPETPAWYASK   76 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~------~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~~~   76 (164)
                      -+.|+.+..+|+++.+..+..-...-.|.+.+..++-.+      +...+..+......+.+...+++|.-+|=+.-+
T Consensus       115 YysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~  192 (433)
T KOG3810|consen  115 YYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFH  192 (433)
T ss_pred             hhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhh
Confidence            467888999999999999988888888888888887655      556666665555555566667777766544433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=85.81  E-value=1.9  Score=38.86  Aligned_cols=50  Identities=14%  Similarity=0.050  Sum_probs=38.5

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHH
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAA   54 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~   54 (164)
                      ..+++.+.+|++.||++.++.++...+|..+++.+...+     +....+++.++
T Consensus       355 ~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~  409 (1140)
T PRK06814        355 LFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIAL  409 (1140)
T ss_pred             HHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            456788999999999999999999999888888876655     44555444443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=85.15  E-value=4.3  Score=33.29  Aligned_cols=65  Identities=12%  Similarity=0.048  Sum_probs=50.3

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHHHhhcCC
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFIIVTFMPE   68 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~~~~~~pE   68 (164)
                      .+-.+.+|+.|+.+.+.+-+++.+.--....++|++...+     +-|.-++...+..++.+++.+++++
T Consensus       400 ~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~  469 (477)
T PF11700_consen  400 ASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDV  469 (477)
T ss_pred             HHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence            4456889999999999999999999999999999887766     5677666666665555666655554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=85.00  E-value=4.5  Score=32.37  Aligned_cols=59  Identities=15%  Similarity=0.190  Sum_probs=47.2

Q ss_pred             chhhhhhccC--chhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHH
Q psy66             5 TYVYVSEISL--PAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIV   63 (164)
Q Consensus         5 ~~~~i~E~~p--~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~   63 (164)
                      .+.+..+.++  |+.++..+++....+++|..++..++...    ++....+++++..++.+...
T Consensus       318 ~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~  382 (394)
T COG2814         318 LQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLA  382 (394)
T ss_pred             hhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence            3445555555  78999999999999999999999999888    88888888888776665554

>KOG2504|consensus

Probab=84.03  E-value=1.4  Score=36.46  Aligned_cols=50  Identities=10%  Similarity=0.071  Sum_probs=39.3

Q ss_pred             ccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH
Q psy66            12 ISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI   61 (164)
Q Consensus        12 ~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~   61 (164)
                      ...+++|+.+.++...+-++|.++-+.+.-.+    |||..+++...+.+-.+.
T Consensus       162 ~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~  215 (509)
T KOG2504|consen  162 TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLV  215 (509)
T ss_pred             hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            45678899999999999999998888877666    999988776666544433

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=83.70  E-value=22  Score=29.49  Aligned_cols=36  Identities=17%  Similarity=0.077  Sum_probs=32.6

Q ss_pred             hhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66             8 YVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML   43 (164)
Q Consensus         8 ~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~   43 (164)
                      +..|++..++-+++.++++.+.++|.+++..+..+.
T Consensus       172 faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~  207 (509)
T COG3202         172 FANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL  207 (509)
T ss_pred             HHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999998887777

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=82.69  E-value=3.8  Score=30.62  Aligned_cols=59  Identities=10%  Similarity=0.099  Sum_probs=41.8

Q ss_pred             hhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCC
Q psy66             9 VSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPE   68 (164)
Q Consensus         9 i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pE   68 (164)
                      ..+..| ++||.+.++.-.+.+++..+-..+...+    .-..+......|.++.++..+++..
T Consensus       121 ~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~  183 (250)
T PF06813_consen  121 CVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRP  183 (250)
T ss_pred             HHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheec
Confidence            345565 6899999999999998876666655544    4566777777777777766666543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=82.44  E-value=2.7  Score=33.75  Aligned_cols=56  Identities=14%  Similarity=0.200  Sum_probs=41.9

Q ss_pred             hhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-------hHHHHHHHHHHHHHHHHHHHhhc
Q psy66            10 SEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-------HWQIVCYFCAATACISFIIVTFM   66 (164)
Q Consensus        10 ~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-------~Wr~~~~~~~~~~~l~~~~~~~~   66 (164)
                      .|..|+ .+|...++.+....+|.++++.+....       +|+..+.+.++..++..+...+.
T Consensus       387 ~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       387 LDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             hhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence            466655 899999999999999999999887654       48888888777666655444333

>KOG0253|consensus

Probab=81.88  E-value=1.5  Score=35.18  Aligned_cols=42  Identities=19%  Similarity=0.176  Sum_probs=37.1

Q ss_pred             CccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66             2 GSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML   43 (164)
Q Consensus         2 ~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~   43 (164)
                      ..++++|.-|+.|...|+...+......=+|.++.|+++.-.
T Consensus       452 fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA~~~  493 (528)
T KOG0253|consen  452 FQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIAMRA  493 (528)
T ss_pred             heEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHHHHh
Confidence            356789999999999999999999999999999999998433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=80.96  E-value=1.8  Score=35.22  Aligned_cols=59  Identities=10%  Similarity=0.023  Sum_probs=41.8

Q ss_pred             hhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhhcC
Q psy66             8 YVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML---HWQIVCYFCAATACISFIIVTFMP   67 (164)
Q Consensus         8 ~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~---~Wr~~~~~~~~~~~l~~~~~~~~p   67 (164)
                      ++.|+ ++++||...++.+.+..+|..+++.+....   +|+..+.+.++..++..+..++++
T Consensus       372 ~~~~~-~~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        372 IVPFV-SRRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             cCccc-ChhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            34455 457899999998888888888887764322   699888888777666666555553

>PRK03699 putative transporter; Provisional

Probab=80.92  E-value=3.6  Score=32.30  Aligned_cols=59  Identities=7%  Similarity=0.083  Sum_probs=40.3

Q ss_pred             hhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhc
Q psy66             7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFM   66 (164)
Q Consensus         7 ~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~   66 (164)
                      .+..|..|. .++...+....+..+|..++|.+....    +|+..+++..+..++.+......
T Consensus       317 ~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (394)
T PRK03699        317 TLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILL  379 (394)
T ss_pred             HHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHH
Confidence            345566654 456666777777788998888887666    88888887777666655544333

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=80.83  E-value=5.3  Score=31.38  Aligned_cols=49  Identities=10%  Similarity=-0.080  Sum_probs=35.3

Q ss_pred             hccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHH
Q psy66            11 EISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACIS   59 (164)
Q Consensus        11 E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~   59 (164)
                      ...+++.||+..++.+....+|..+++.++...    +|........+.+++.
T Consensus       335 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        335 LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence            344568999999999999999999998888776    5555444444443333

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=80.61  E-value=8.6  Score=31.54  Aligned_cols=38  Identities=8%  Similarity=0.075  Sum_probs=32.3

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAG   40 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~   40 (164)
                      +....++.+.+|++.+|.+++++.....+|..++..++
T Consensus       398 ~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~  435 (489)
T PRK10207        398 ALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVA  435 (489)
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456778899999999999999999999998888776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.71
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.47
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.3
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.1
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.7
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.51
2xut_A	524	Proton/peptide symporter family protein; transport	97.07
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	96.35
2cfq_A	417	Lactose permease; transport, transport mechanism,	95.79
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	95.71
2xut_A	524	Proton/peptide symporter family protein; transport	94.71
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	86.76
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	86.09
2cfq_A	417	Lactose permease; transport, transport mechanism,	85.39

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.71  E-value=2.3e-16  Score=124.76  Aligned_cols=90  Identities=21%  Similarity=0.451  Sum_probs=83.5

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH------------hHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML------------HWQIVCYFCAATACISFIIVTFMPETP   70 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~------------~Wr~~~~~~~~~~~l~~~~~~~~pESp   70 (164)
                      +++++|++|++|+++||+..++.+.++.+|.++++.++...            +||+++.+..+++++.++..+++||||
T Consensus       145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp  224 (491)
T 4gc0_A          145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESP  224 (491)
T ss_dssp             HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCH
T ss_pred             HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCCh
Confidence            46789999999999999999999999999999999988755            799999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHhCC
Q psy66            71 AWYASKGLVVKSSASLNWLRNS   92 (164)
Q Consensus        71 ~~l~~~~~~~~a~~~l~~i~~~   92 (164)
                      |||..|++.|++++.+++..++
T Consensus       225 ~~L~~~~~~~~a~~~l~~~~~~  246 (491)
T 4gc0_A          225 RWLMSRGKQEQAEGILRKIMGN  246 (491)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCchhHHHHhHHHhcCC
Confidence            9999999999999999988764

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.47  E-value=1.8e-07  Score=72.69  Aligned_cols=71  Identities=15%  Similarity=0.055  Sum_probs=59.9

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----h-HHHHHHHHHHHHHHHH-HHHhhcCCchHHH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----H-WQIVCYFCAATACISF-IIVTFMPETPAWY   73 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~-Wr~~~~~~~~~~~l~~-~~~~~~pESp~~l   73 (164)
                      +....++.|+.|+++|++..++.+.+..+|.++++.++...    + ||+.+++.+++.++.. +..+++||+|+..
T Consensus       138 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  214 (451)
T 1pw4_A          138 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC  214 (451)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT
T ss_pred             chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhc
Confidence            34567899999999999999999999999999999998764    7 9999999888766654 4557789998764

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.30  E-value=6.7e-07  Score=68.06  Aligned_cols=69  Identities=16%  Similarity=0.150  Sum_probs=58.8

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH-HHhhcCCchHH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI-IVTFMPETPAW   72 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp~~   72 (164)
                      ....++.|+.|+++|++..+..+.+..+|.++++.++...    +||+.+.+.++..++..+ ..+++||+|+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T 2gfp_A          108 MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV  181 (375)
T ss_dssp             HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred             hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence            4567889999999999999999999999999999998877    899999988887766655 45678998754

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.10  E-value=1e-05  Score=62.46  Aligned_cols=70  Identities=16%  Similarity=0.183  Sum_probs=55.5

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----h-------------------------HHHHHHHH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----H-------------------------WQIVCYFC   52 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~-------------------------Wr~~~~~~   52 (164)
                      +....++.|+.|+++|++..++.+.+..+|.++++.++..+     +                         ||+.+.+.
T Consensus       136 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  215 (438)
T 3o7q_A          136 TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMII  215 (438)
T ss_dssp             HHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHH
Confidence            35678899999999999999999999999999999998766     2                         99999877


Q ss_pred             HHHHHHHHHHH--hhcCCchHH
Q psy66            53 AATACISFIIV--TFMPETPAW   72 (164)
Q Consensus        53 ~~~~~l~~~~~--~~~pESp~~   72 (164)
                      +++.++..+..  ...||+++.
T Consensus       216 ~~~~~~~~~~~~~~~~p~~~~~  237 (438)
T 3o7q_A          216 VAIVLLVALLIMLTKFPALQSD  237 (438)
T ss_dssp             HHHHHHHHHHHHHCCCCCCTTT
T ss_pred             HHHHHHHHHHHHHHcCCccccc
Confidence            76655544333  336888763

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.70  E-value=0.0006  Score=53.45  Aligned_cols=60  Identities=12%  Similarity=0.046  Sum_probs=48.9

Q ss_pred             ccchhhhhhccCchh--HHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHH
Q psy66             3 SSTYVYVSEISLPAY--RGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFII   62 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~--Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~   62 (164)
                      +..+.++.|+.|+++  |+...+..+.+..+|..+++.++..+    +||+.+++.++..++..+.
T Consensus       127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  192 (491)
T 4aps_A          127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLV  192 (491)
T ss_dssp             HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            356778999999988  77788888899999999999998776    9999999887765554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.51  E-value=0.00016  Score=56.63  Aligned_cols=68  Identities=24%  Similarity=0.296  Sum_probs=47.0

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----------hHHHHHHHHHHHHHHHH-HHHhhcCCch
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----------HWQIVCYFCAATACISF-IIVTFMPETP   70 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----------~Wr~~~~~~~~~~~l~~-~~~~~~pESp   70 (164)
                      ++..+|.+|+.|.+.|+...++......+|.++++.+.-..          ++...+++-+..+++.. +..+++|||.
T Consensus       389 ~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk  467 (491)
T 4gc0_A          389 PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK  467 (491)
T ss_dssp             HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred             HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence            34567899999999999999998888888877766554322          33344555555555544 4457799983

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.07  E-value=0.00093  Score=52.84  Aligned_cols=62  Identities=6%  Similarity=0.007  Sum_probs=50.0

Q ss_pred             ccchhhhhhccCchhHHHHHhH---HHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHh
Q psy66             3 SSTYVYVSEISLPAYRGLFASL---GPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVT   64 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~---~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~   64 (164)
                      +..+.++.|+.|+++|++..+.   .+.+..+|.++++.++..+    +||+.+.+.++..++..+..+
T Consensus       128 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          128 PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            4556789999999999877766   8888999999999987766    899999988877665554443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=96.35  E-value=0.0083  Score=46.13  Aligned_cols=60  Identities=13%  Similarity=0.076  Sum_probs=49.9

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHH-HHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHh
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSL-GVLFVYYAGYML----HWQIVCYFCAATACISFIIVT   64 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~-G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~   64 (164)
                      ...++.|..|++.||...++.+....+ |..+++.+...+    +|+..+++.++..++..+..+
T Consensus       367 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  431 (451)
T 1pw4_A          367 IGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  431 (451)
T ss_dssp             HHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence            346889999999999999999999999 999999888766    889888887777666655544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=95.79  E-value=0.009  Score=46.05  Aligned_cols=66  Identities=11%  Similarity=0.044  Sum_probs=48.7

Q ss_pred             hhhhhhccCchhHHHHHhH-HHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHH-hhcCCchH
Q psy66             6 YVYVSEISLPAYRGLFASL-GPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIV-TFMPETPA   71 (164)
Q Consensus         6 ~~~i~E~~p~~~Rg~~~~~-~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~-~~~pESp~   71 (164)
                      ..++.|..|++.||...+. .+....+|..+++.++..+    ++...+.+.++..++..+.. .+.||.++
T Consensus       334 ~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence            4688999999999998877 4777788888888887765    77778877777666555443 44566543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=95.71  E-value=0.01  Score=46.34  Aligned_cols=67  Identities=7%  Similarity=-0.004  Sum_probs=47.5

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHH-hhcCCc
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML---HWQIVCYFCAATACISFIIV-TFMPET   69 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~---~Wr~~~~~~~~~~~l~~~~~-~~~pES   69 (164)
                      +....++.|..|++.||...++.+....+|..+++.+....   +....+.+.++..++..+.. .+.++.
T Consensus       405 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (491)
T 4aps_A          405 PVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRI  475 (491)
T ss_dssp             THHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999998766   44555555555544444333 333443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=94.71  E-value=0.026  Score=44.45  Aligned_cols=40  Identities=20%  Similarity=0.271  Sum_probs=35.4

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML   43 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~   43 (164)
                      ....++.|.+|++.||...++.+....+|..+++.+....
T Consensus       425 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~  464 (524)
T 2xut_A          425 TGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSV  464 (524)
T ss_dssp             HHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456789999999999999999999999999999988766

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=86.76  E-value=0.42  Score=35.63  Aligned_cols=48  Identities=13%  Similarity=-0.069  Sum_probs=38.6

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYF   51 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~   51 (164)
                      +....++.|..| ++||+..++.+....+|..+++.+....    +|+..+.+
T Consensus       310 ~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~  361 (375)
T 2gfp_A          310 PLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM  361 (375)
T ss_dssp             STTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            456678899998 8999999999999999999888887665    56655554

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=86.09  E-value=1  Score=34.18  Aligned_cols=58  Identities=10%  Similarity=-0.089  Sum_probs=38.7

Q ss_pred             cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----h-HHHHHHHHHHHHHHHHHHH
Q psy66             4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----H-WQIVCYFCAATACISFIIV   63 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~-Wr~~~~~~~~~~~l~~~~~   63 (164)
                      ....+..|..|++ |+...++.. ...+|..+++.+...+    + ++..+.+..+..++.++..
T Consensus       367 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  429 (438)
T 3o7q_A          367 TIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFA  429 (438)
T ss_dssp             HHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            3455668888877 777777666 4457888888887666    5 8877776655544444333

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=85.39  E-value=0.04  Score=42.38  Aligned_cols=54  Identities=15%  Similarity=0.164  Sum_probs=33.2

Q ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhhc-CCch
Q psy66            17 YRGLFASLGPVFVSLGVLFVYYAGYML---HWQIVCYFCAATACISFIIVTFM-PETP   70 (164)
Q Consensus        17 ~Rg~~~~~~~~~~~~G~ll~~~~~~~~---~Wr~~~~~~~~~~~l~~~~~~~~-pESp   70 (164)
                      .|+...+....+..+|..+++.++...   +||..+++..++.++..+..++. ||+|
T Consensus       135 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  192 (417)
T 2cfq_A          135 RSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAP  192 (417)
T ss_dssp             HHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCCS
T ss_pred             hcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCcccc
Confidence            444444444455566666677666555   79999988877765555555454 4443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.32
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.35
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	96.29
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	89.77

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=2e-07  Score=70.09  Aligned_cols=70  Identities=16%  Similarity=0.054  Sum_probs=56.2

Q ss_pred             ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHH-HHHhhcCCchHH
Q psy66             3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISF-IIVTFMPETPAW   72 (164)
Q Consensus         3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~-~~~~~~pESp~~   72 (164)
                      +....++.|+.|+++||+..++.+.+..+|.++++.++...     +||+.+++..++.++.. +...+++|+|+.
T Consensus       135 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (447)
T d1pw4a_         135 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQS  210 (447)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred             hHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhh
Confidence            34567899999999999999999999999999988876654     89999888887766554 445567777754

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.00013  Score=52.91  Aligned_cols=65  Identities=12%  Similarity=0.089  Sum_probs=48.4

Q ss_pred             cchhhhhhccCchhHHHHHhHH-HHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHH-HhhcCC
Q psy66             4 STYVYVSEISLPAYRGLFASLG-PVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFII-VTFMPE   68 (164)
Q Consensus         4 ~~~~~i~E~~p~~~Rg~~~~~~-~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~-~~~~pE   68 (164)
                      ....++.|..|++.||+..++. ++...+|..+++.+++.+    +|+..+++.++..++..+. .+.+++
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            4566889999999999998864 566778888888887666    8999888777766555444 444443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.0033  Score=46.20  Aligned_cols=59  Identities=14%  Similarity=0.081  Sum_probs=43.4

Q ss_pred             chhhhhhccCchhHHHHHhHHHHHHHH-HHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHH
Q psy66             5 TYVYVSEISLPAYRGLFASLGPVFVSL-GVLFVYYAGYML----HWQIVCYFCAATACISFIIV   63 (164)
Q Consensus         5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~-G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~   63 (164)
                      ...+..|..|++.||...++.+....+ |.++++.+....    +|+..+.+.....++..+..
T Consensus       364 ~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  427 (447)
T d1pw4a_         364 IGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL  427 (447)
T ss_dssp             HHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999988776655 667777776555    88988877666655554433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=89.77  E-value=0.4  Score=33.52  Aligned_cols=55  Identities=9%  Similarity=0.109  Sum_probs=33.8

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhH---hHHHHHHH-HHHHHHHHHHHHhhcCCchHH
Q psy66            18 RGLFASLGPVFVSLGVLFVYYAGYML---HWQIVCYF-CAATACISFIIVTFMPETPAW   72 (164)
Q Consensus        18 Rg~~~~~~~~~~~~G~ll~~~~~~~~---~Wr~~~~~-~~~~~~l~~~~~~~~pESp~~   72 (164)
                      +.............|..+++.++...   +|+..+.. .....++..+..+..+|+|+.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (417)
T d1pv7a_         136 SNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSS  194 (417)
T ss_dssp             HSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSS
T ss_pred             hHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHHHHhcccccc
Confidence            33444566666777777777777666   55554444 444455556666777887753